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Sample records for biogenic compounds including

  1. Biogenic volatile organic compounds - small is beautiful

    Science.gov (United States)

    Owen, S. M.; Asensio, D.; Li, Q.; Penuelas, J.

    2012-12-01

    While canopy and regional scale flux measurements of biogenic volatile organic compounds (bVOCs) are essential to obtain an integrated picture of total compound reaching the atmosphere, many fascinating and important emission details are waiting to be discovered at smaller scales, in different ecological and functional compartments. We concentrate on bVOCs below ground to soil surfaces are small, bVOCs are exuded by roots of some plant species, and can be extracted from decaying litter. Naturally occurring monoterpenes in the rhizosphere provide a specialised carbon source for micro-organisms, helping to define the micro-organism community structure, and impacting on nutrient cycles which are partly controlled by microorganisms. Naturally occurring monoterpenes in the soil system could also affect the aboveground structure of ecosystems because of their role in plant defence strategies and as mediating chemicals in allelopathy. A gradient of monoterpene concentration was found in soil around Pinus sylvestris and Pinus halepensis, decreasing with distance from the tree. Some compounds (α-pinene, sabinene, humulene and caryophyllene) in mineral soil were linearly correlated with the total amount of each compound in the overlying litter, indicating that litter might be the dominant source of these compounds. However, α-pinene did not fall within the correlation, indicating a source other than litter, probably root exudates. We also show that rhizosphere bVOCs can be a carbon source for soil microbes. In a horizontal gradient from Populus tremula trees, microbes closest to the tree trunk were better enzymatically equipped to metabolise labeled monoterpene substrate. Monoterpenes can also increase the degradation rate in soil of the persistant organic pollutants, likely acting as analogues for the cometabo-lism of polychlorinated biphenyls (PCBs) Flowers of a ginger species (Alpinia kwangsiensis) and a fig species (Ficus hispida) showed different bVOC signals pre- and

  2. Biogenic sulfur compounds and the global sulfur cycle

    International Nuclear Information System (INIS)

    Aneja, V.P.; Aneja, A.P.; Adams, D.F.

    1982-01-01

    Field measurements of biogenic sulfur compounds shows a great variation in concentrations and emission rates for H 2 S, DMS, CS 2 and COS. Measurements by the chamber method and estimates from micrometeorological sampling are employed to determine the earth-atmosphere flux of these gases. Much of the variation can be attributed to differences of climate and surface conditions, with marshes being a large source of biogenic sulfur (mean contribution 4 x 10 to the 6th ton/year maximum contribution 142 x 10 to the 6th ton/year). Considering that the estimated biogenic contribution needed to balance the global sulfur cycle ranges from 40- 230 x 10 to the 6th tons/year, the mean values are not sufficient to balance this cycle. Further experimental investigations are suggested in order to characterize the biogenic processes adequately

  3. Biogenic volatile compounds of activated sludge and their ...

    African Journals Online (AJOL)

    Heavy metals pollution is nowadays one of the most important environmental concerns. This paper illustrates the employment of the biogenic volatile compounds generated during the aerobic growth of activated sludge on raw domestic wastewater for heavy metals removal. Most of the tested metals even as individual or ...

  4. Emission and role of biogenic volatile organic compounds in biosphere

    International Nuclear Information System (INIS)

    Saleem, A.R.

    2013-01-01

    Plants are an essential part of the biosphere. Under the influence of climate change, plants respond in multiple ways within the ecosystem. One such way is the release of assimilated carbon back to the atmosphere in form of biogenic volatile organic compounds (BVOCs), which are produced by plants and are involved in plant growth, reproduction, defense and other . These compounds are emitted from vegetation into the atmosphere under different environmental situations. Plants produce an extensive range of BVOCs, including isoprenoids, sequisterpenes, aldehydes, alcohols and terpenes in different tissues above and below the ground. The emission rates vary with various environmental conditions and the plant growth stage in its life span.BVOCs are released under biotic and abiotic stress changes, like heat, drought, land-use changes, higher atmospheric CO concentrations, increased UV radiation and insect or disease attack. Plants emit BVOCs in atmosphere in order to avoid stress, and adapt to harsh circumstances. These compounds also have a significant role in plant-plant interaction, communication and competition. BVOCs have the ability to alter atmospheric chemistry; they readily react with atmospheric pollutant gases under high temperature and form tropospheric ozone, which is a potent air pollutant for global warming and disease occurrence. BVOCs may be a cause of photochemical smog and increase the stay of other GHGs in the atmosphere. Therefore, further study is required to assess the behavior of BVOCs in the biosphere as well as the atmosphere. (author)

  5. Biogenic volatile organic compound emissions from vegetation fires.

    Science.gov (United States)

    Ciccioli, Paolo; Centritto, Mauro; Loreto, Francesco

    2014-08-01

    The aim of this paper was to provide an overview of the current state of the art on research into the emission of biogenic volatile organic compounds (BVOCs) from vegetation fires. Significant amounts of VOCs are emitted from vegetation fires, including several reactive compounds, the majority belonging to the isoprenoid family, which rapidly disappear in the plume to yield pollutants such as secondary organic aerosol and ozone. This makes determination of fire-induced BVOC emission difficult, particularly in areas where the ratio between VOCs and anthropogenic NOx is favourable to the production of ozone, such as Mediterranean areas and highly anthropic temperate (and fire-prone) regions of the Earth. Fire emissions affecting relatively pristine areas, such as the Amazon and the African savannah, are representative of emissions of undisturbed plant communities. We also examined expected BVOC emissions at different stages of fire development and combustion, from drying to flaming, and from heatwaves coming into contact with unburned vegetation at the edge of fires. We conclude that forest fires may dramatically change emission factors and the profile of emitted BVOCs, thereby influencing the chemistry and physics of the atmosphere, the physiology of plants and the evolution of plant communities within the ecosystem. © 2014 The Authors. Plant, Cell & Environment published by John Wiley & Sons Ltd.

  6. Biogenic volatile organic compound (VOC) emissions from forests in Finland

    International Nuclear Information System (INIS)

    Lindfors, V.; Laurila, T.

    2000-01-01

    We present model estimates of biogenic volatile organic compound (VOC) emissions from the forests in Finland. The emissions were calculated for the years 1995-1997 using the measured isoprene and monoterpene emission factors of boreal tree species together with detailed satellite land cover information and meteorological data. The three-year average emission is 319 kilotonnes per annum, which is significantly higher than the estimated annual anthropogenic VOC emissions of 193 kilotonnes. The biogenic emissions of the Finnish forests are dominated by monoterpenes, which contribute approximately 45% of the annual total. The main isoprene emitter is the Norway spruce (Picea abies) due to its high foliar biomass density. Compared to the monoterpenes, however, the total isoprene emissions are very low, contributing only about 7% of the annual forest VOC emissions. The isoprene emissions are more sensitive to the meteorological conditions than the monoterpene emissions, but the progress of the thermal growing season is clearly reflected in all biogenic emission fluxes. The biogenic emission densities in northern Finland are approximately half of the emissions in the southern parts of the country. (orig.)

  7. EFFICIENCY OF REMOVING BIOGENIC COMPOUNDS IN WATER TREATMENT

    Directory of Open Access Journals (Sweden)

    Artur Jachimowski

    2017-08-01

    Full Text Available The aim of the study was to determine the effectiveness of removal of biogenic compounds from water during the treatment process in water treatment plants of Municipal Water Supply and Sewerage Company in Cracow. The selected water quality indicators were analyzed before and after the treatment process in 2007 - 2014. The research was carried out in waters taken from plants that differed in treatment and production. In the analyzed technological systems it was stated that the biggest objections raised the concentration of nitrates, the average content of which is higher in treated water in three plants: Rudawa, Dłubnia and Bielany.

  8. Monitoring biogenic volatile compounds emitted by Eucalyptus citriodora using SPME.

    Science.gov (United States)

    Zini, C A; Augusto, F; Christensen, T E; Smith, B P; Caramão, E B; Pawliszy, J

    2001-10-01

    A procedure to monitor BVOC emitted by living plants using SPME technique is presented. For this purpose, a glass sampling chamber was designed. This device was employed for the characterization of biogenic volatile compounds emitted by leaves of Eucalyptus citriodora. After extraction with SPME fibers coated with PDMS/ DVB, it was possible to identify or detect 33 compounds emitted by this plant. A semiquantitative approach was applied to monitor the behavior of the emitted BVOC during 9 days. Circadian profiles of the variation in the concentration of isoprene were plotted. Using diffusion-based SPME quantitation, a recently introduced analytical approach, with extraction times as short as 15 s, it was possible to quantify subparts-per-billion amounts of isoprene emitted by this plant.

  9. Emission of Biogenic Volatile Organic Compounds in the Arctic

    DEFF Research Database (Denmark)

    Lindwall, Frida

    , emitted in order to communicate within and between trophic levels and as protection against biotic and abiotic stresses, or as byproducts. Some BVOCs are very reactive, and when entering the atmosphere they rapidly react with for example hydroxyl radicals and ozone, affecting the oxidative capacity......Emissions of biogenic volatile organic compounds (BVOCs) from arctic ecosystems are scarcely studied and the effect of climate change on BVOC emissions even less so. BVOCs are emitted from all living organisms and play a role for atmospheric chemistry. The major part of BVOCs derives from plants...... dependent and the emissions will increase in a future warmer climate. The aims of this dissertation were to study BVOC emission rates and blends from arctic ecosystems and to reveal the effect of climate change on BVOC emissions from the Arctic. BVOC emissions were measured in ambient and modified...

  10. Emission of the main biogenic volatile organic compounds in France

    International Nuclear Information System (INIS)

    Luchetta, L.; Simon, V.; Torres, L.

    2000-01-01

    An estimation of biogenic emissions of the main non-methanic Volatile Organic Compounds (VOCs) due to the forest cover in France has been realized. 32 species representing 98% of French forest have been considered for the estimation. The latter dealt on a net made of 93 irregular spatial grids (Departments) with an average size of 75 km x 75 km. We assigned emission rates and foliar biomass densities specific to each of the 32 species. The environmental variables (temperature, light intensity) have been collected for the whole of French Departments. A special effort was extended so as to use ''Guenther's'' calculation algorithms, and specific emitting factors to species growing in France or in bordering countries. Along the way of the five years (1994-1998) of the study we have calculated the yearly mean of isoprene, mono-terpenes and Other Volatile Organic Compounds (OVOCs) emissions on the scale of the French Departments. At the national level isoprene emission is reckoned at 457 kt yr -1 and represents nearly 49% of the total emission, whereas mono-terpenes with 350 kt yr -1 and OVOCs with 129 kt yr -1 represent respectively 37% and 14% of the total. The yearly biogenic emission of VOCs in France represents virtually half the anthropic source. However in some regions (Mediterranean area) natural emissions can widely exceed anthropic emissions during certain periods. Let's note the whole of our results remains tinged with a great uncertainty because the estimations carried out are presented with correction factors that can reach values comprised between 4 and 7. (author)

  11. Biogenic, urban, and wildfire influences on the molecular composition of dissolved organic compounds in cloud water

    Directory of Open Access Journals (Sweden)

    R. D. Cook

    2017-12-01

    Full Text Available Organic aerosol formation and transformation occurs within aqueous aerosol and cloud droplets, yet little is known about the composition of high molecular weight organic compounds in cloud water. Cloud water samples collected at Whiteface Mountain, New York, during August–September 2014 were analyzed by ultra-high-resolution mass spectrometry to investigate the molecular composition of dissolved organic carbon, with a focus on sulfur- and nitrogen-containing compounds. Organic molecular composition was evaluated in the context of cloud water inorganic ion concentrations, pH, and total organic carbon concentrations to gain insights into the sources and aqueous-phase processes of the observed high molecular weight organic compounds. Cloud water acidity was positively correlated with the average oxygen : carbon ratio of the organic constituents, suggesting the possibility for aqueous acid-catalyzed (prior to cloud droplet activation or during/after cloud droplet evaporation and/or radical (within cloud droplets oxidation processes. Many tracer compounds recently identified in laboratory studies of bulk aqueous-phase reactions were identified in the cloud water. Organosulfate compounds, with both biogenic and anthropogenic volatile organic compound precursors, were detected for cloud water samples influenced by air masses that had traveled over forested and populated areas. Oxidation products of long-chain (C10−12 alkane precursors were detected during urban influence. Influence of Canadian wildfires resulted in increased numbers of identified sulfur-containing compounds and oligomeric species, including those formed through aqueous-phase reactions involving methylglyoxal. Light-absorbing aqueous-phase products of syringol and guaiacol oxidation were observed in the wildfire-influenced samples, and dinitroaromatic compounds were observed in all cloud water samples (wildfire, biogenic, and urban-influenced. Overall, the cloud water molecular

  12. Biogenic, urban, and wildfire influences on the molecular composition of dissolved organic compounds in cloud water

    Science.gov (United States)

    Cook, Ryan D.; Lin, Ying-Hsuan; Peng, Zhuoyu; Boone, Eric; Chu, Rosalie K.; Dukett, James E.; Gunsch, Matthew J.; Zhang, Wuliang; Tolic, Nikola; Laskin, Alexander; Pratt, Kerri A.

    2017-12-01

    Organic aerosol formation and transformation occurs within aqueous aerosol and cloud droplets, yet little is known about the composition of high molecular weight organic compounds in cloud water. Cloud water samples collected at Whiteface Mountain, New York, during August-September 2014 were analyzed by ultra-high-resolution mass spectrometry to investigate the molecular composition of dissolved organic carbon, with a focus on sulfur- and nitrogen-containing compounds. Organic molecular composition was evaluated in the context of cloud water inorganic ion concentrations, pH, and total organic carbon concentrations to gain insights into the sources and aqueous-phase processes of the observed high molecular weight organic compounds. Cloud water acidity was positively correlated with the average oxygen : carbon ratio of the organic constituents, suggesting the possibility for aqueous acid-catalyzed (prior to cloud droplet activation or during/after cloud droplet evaporation) and/or radical (within cloud droplets) oxidation processes. Many tracer compounds recently identified in laboratory studies of bulk aqueous-phase reactions were identified in the cloud water. Organosulfate compounds, with both biogenic and anthropogenic volatile organic compound precursors, were detected for cloud water samples influenced by air masses that had traveled over forested and populated areas. Oxidation products of long-chain (C10-12) alkane precursors were detected during urban influence. Influence of Canadian wildfires resulted in increased numbers of identified sulfur-containing compounds and oligomeric species, including those formed through aqueous-phase reactions involving methylglyoxal. Light-absorbing aqueous-phase products of syringol and guaiacol oxidation were observed in the wildfire-influenced samples, and dinitroaromatic compounds were observed in all cloud water samples (wildfire, biogenic, and urban-influenced). Overall, the cloud water molecular composition depended on

  13. Estimation of biogenic volatile organic compounds emissions in subtropical island--Taiwan.

    Science.gov (United States)

    Chang, Ken-Hui; Chen, Tu-Fu; Huang, Ho-Chun

    2005-06-15

    Elevated tropospheric ozone is harmful to human health and plants. It is formed through the photochemical reactions involving volatile organic compounds (VOCs) and nitrogen oxides (NO(x)). The elevated ozone episodes occur mainly in summer months in the United States, while the high-ozone episodes frequently occur during the fall in Taiwan. The unique landscape of Taiwan produces tremendous amounts of biogenic VOCs in the mountain regions that are adjacent to concentrated urban areas. The urban areas, in turn, generate prodigious amounts of anthropogenic emissions. Biogenic VOC emissions have direct influence on tropospheric ozone formation. To explore the air quality problems in Taiwan, this study attempts to develop a biogenic VOC emission model suitable for air quality applications in Taiwan. The emission model is based on the Biogenic Emissions Inventory System Version 2 and coupled with a detailed Taiwan land use database. The 1999 total Taiwan biogenic VOC emissions were estimated at 214,000 metric tons. The emissions of isoprene, monoterpenes, and other VOCs were about 37.2%, 30.4%, and 32.4% of total biogenic VOC emissions, respectively. The annual total biogenic VOC emission per unit area was more than two times the value of that in any European country, implying that detailed emissions estimates in any size of region will benefit the global biogenic emission inventories.

  14. An Estimate of Biogenic Emissions of Volatile Organic Compounds during Summertime in China (7 pp).

    Science.gov (United States)

    Heinrich, Almut

    2007-01-01

    and Aim. An accurate estimation of biogenic emissions of VOC (volatile organic compounds) is necessary for better understanding a series of current environmental problems such as summertime smog and global climate change. However, very limited studies have been reported on such emissions in China. The aim of this paper is to present an estimate of biogenic VOC emissions during summertime in China, and discuss its uncertainties and potential areas for further investigations. This study was mainly based on field data and related research available so far in China and abroad, including distributions of land use and vegetations, biomass densities and emission potentials. VOC were grouped into isoprene, monoterpenes and other VOC (OVOC). Emission potentials of forests were determined for 22 genera or species, and then assigned to 33 forest ecosystems. The NCEP/NCAR reanalysis database was used as standard environmental conditions. A typical summertime of July 1999 was chosen for detailed calculations. The biogenic VOC emissions in China in July were estimated to be 2.3×1012gC, with 42% as isoprene, 19% as monoterpenes and 39% as OVOC. About 77.3% of the emissions are generated from forests and woodlands. The averaged emission intensity was 4.11 mgC m-2 hr-1 for forests and 1.12 mgC m-2 hr-1 for all types of vegetations in China during the summertime. The uncertainty in the results arose from both the data and the assumptions used in the extrapolations. Generally, uncertainty in the field measurements is relatively small. A large part of the uncertainty mainly comes from the taxonomic method to assign emission potentials to unmeasured species, while the ARGR method serves to estimate leaf biomass and the emission algorithms to describe light and temperature dependence. This study describes a picture of the biogenic VOC emissions during summertime in China. Due to the uneven spatial and temporal distributions, biogenic VOC emissions may play an important role in the

  15. Off-season biogenic volatile organic compound emissions from heath mesocosms

    DEFF Research Database (Denmark)

    Rinnan, Riikka; Gierth, Diana; Bilde, Merete

    2013-01-01

    Biogenic volatile organic compounds (BVOCs) affect both atmospheric processes and ecological interactions. Our primary aim was to differentiate between BVOC emissions from above- and belowground plant parts and heath soil outside the growing season. The second aim was to assess emissions from...... herbivory, mimicked by cutting the plants. Mesocosms from a temperate Deschampsia flexuosa-dominated heath ecosystem and a subarctic mixed heath ecosystem were either left intact, the aboveground vegetation was cut, or all plant parts (including roots) were removed. For 3-5 weeks, BVOC emissions were...... measured in growth chambers by an enclosure method using gas chromatography-mass spectrometry. CO2 exchange, soil microbial biomass and soil carbon and nitrogen concentrations were also analyzed. Vegetation cutting increased BVOC emissions by more than 20-fold, and the induced compounds were mainly eight...

  16. Rapid Deposition of Oxidized Biogenic Compounds to a Temperate Forest

    Science.gov (United States)

    Nguyen, Tran B.; Crounse, John D.; Teng, Alex P.; St. Clair, Jason M.; Paulot, Fabien; Wolfe, Glenn M.; Wennberg, Paul O.

    2015-01-01

    We report fluxes and dry deposition velocities for 16 atmospheric compounds above a southeastern United States forest, including: hydrogen peroxide (H2O2), nitric acid (HNO3), hydrogen cyanide (HCN), hydroxymethyl hydroperoxide, peroxyacetic acid, organic hydroxy nitrates, and other multifunctional species derived from the oxidation of isoprene and monoterpenes. The data suggest that dry deposition is the dominant daytime sink for small, saturated oxygenates. Greater than 6 wt %C emitted as isoprene by the forest was returned by dry deposition of its oxidized products. Peroxides account for a large fraction of the oxidant flux, possibly eclipsing ozone in more pristine regions. The measured organic nitrates comprise a sizable portion (15%) of the oxidized nitrogen input into the canopy, with HNO3 making up the balance. We observe that water-soluble compounds (e.g., strong acids and hydroperoxides) deposit with low surface resistance whereas compounds with moderate solubility (e.g., organic nitrates and hydroxycarbonyls) or poor solubility (e.g., HCN) exhibited reduced uptake at the surface of plants. To first order, the relative deposition velocities of water-soluble compounds are constrained by their molecular diffusivity. From resistance modeling, we infer a substantial emission flux of formic acid at the canopy level (approx. 1 nmol m(exp.-2)·s(exp.-1)). GEOS-Chem, awidely used atmospheric chemical transport model, currently underestimates dry deposition for most molecules studied in this work. Reconciling GEOS-Chem deposition velocities with observations resulted in up to a 45% decrease in the simulated surface concentration of trace gases.

  17. Spatio-temporal variation of biogenic volatile organic compounds emissions in China.

    Science.gov (United States)

    Li, L Y; Chen, Y; Xie, S D

    2013-11-01

    Aiming to reduce the large uncertainties of biogenic volatile organic compounds (BVOCs) emissions estimation, the emission inventory of BVOCs in China at a high spatial and temporal resolution of 36 km × 36 km and 1 h was established using MEGANv2.1 with MM5 providing high-resolution meteorological data, based on the most detailed and latest vegetation investigations. BVOC emissions from 82 plant functional types in China were computed firstly. More local species-specific emission rates were developed combining statistical analysis and category classification, and the leaf biomass was estimated based on vegetation volume and production with biomass-apportion models. The total annual BVOC emissions in 2003 were 42.5 Tg, including isoprene 23.4 Tg, monoterpene 5.6 Tg, sesquiterpene 1.0 Tg, and other VOCs (OVOCs) 12.5 Tg. Subtropical and tropical evergreen and deciduous broadleaf shrubs, Quercus, and bamboo contributed more than 45% to the total BVOC emissions. The highest biogenic emissions were found over northeastern, southeastern, and southwestern China. Strong seasonal pattern was observed with the highest BVOC emissions in July and the lowest in January and December, with daily emission peaked at approximately 13:00 or 14:00 local time. Copyright © 2013 Elsevier Ltd. All rights reserved.

  18. BIOGENIC VOLATILE ORGANIC COMPOUND EMISSIONS FROM A LOWLAND TROPICAL WET FOREST IN COSTA RICA

    Science.gov (United States)

    Twenty common plant species were screened for emissions of biogenic volatile organic compounds (BVOCS) at a lowland tropical wet forest site in Costa Rica. Ten of the species. examined emitted substantial quantities of isoprene. These species accounted for 35-50% of the total bas...

  19. Detection of a few of biogenic volatile organic compounds by means of Raman scattering of isocyanide-adsorbed gold nanostructures

    Science.gov (United States)

    Kim, Kwan; Lee, Ji Won; Shin, Kuan Soo

    We demonstrate that the NC stretching band of 2,6-dimethylphenylisocyanide (2,6-DMPI) adsorbed on poly(ethylenimine)-capped Au film is very susceptible to the kind of biogenic volatile organic compounds (VOCs) exposed, suggesting that the isocyanide-adsorbed noble metal nanostructures can be used as a platform for a biogenic VOC sensor operating via surface-enhanced Raman scattering (SERS). Specifically, first we demonstrate that highly SERS-active Au films can easily be fabricated onto the inner surfaces of glass capillaries, being able to measure the SERS spectra of 2,6-DMPI facilely and thus to monitor the shift of its NC stretching band rapidly in response to a variety of biogenic VOCs including isoprene, farnesol, and (+)-α-pinene. Secondly, we are able to deduce from the NC stretching peak shifts that farnesol must act as an electron acceptor so as to increase the surface potential of Au nanoparticles, while isoprene and (+)-α-pinene are electron donors, resulting in the decrease in the surface potential of Au nanoparticles. To our knowledge, this is the first report, informing the applicability of SERS, though indirect, in the detection of biogenic VOCs.

  20. Rapid mineralization of biogenic volatile organic compounds in temperate and Arctic soils

    OpenAIRE

    Albers, Christian Nyrop; Kramshøj, Magnus; Rinnan, Riikka

    2018-01-01

    Biogenic volatile organic compounds (BVOCs) are produced by all life forms. Their release into the atmosphere is important with regards to a number of physical and chemical processes and great effort has been put into determining sources and sinks of these compounds in recent years. Soil microbes as a possible sink for BVOCs in the atmosphere has been suggested, however, experimental evidence for this sink is scarce despite its potentially high importance to both carbon cycling and atmospheri...

  1. Off-season biogenic volatile organic compound emissions from heath mesocosms: responses to vegetation cutting.

    Science.gov (United States)

    Rinnan, Riikka; Gierth, Diana; Bilde, Merete; Rosenørn, Thomas; Michelsen, Anders

    2013-01-01

    Biogenic volatile organic compounds (BVOCs) affect both atmospheric processes and ecological interactions. Our primary aim was to differentiate between BVOC emissions from above- and belowground plant parts and heath soil outside the growing season. The second aim was to assess emissions from herbivory, mimicked by cutting the plants. Mesocosms from a temperate Deschampsia flexuosa-dominated heath ecosystem and a subarctic mixed heath ecosystem were either left intact, the aboveground vegetation was cut, or all plant parts (including roots) were removed. For 3-5 weeks, BVOC emissions were measured in growth chambers by an enclosure method using gas chromatography-mass spectrometry. CO2 exchange, soil microbial biomass, and soil carbon and nitrogen concentrations were also analyzed. Vegetation cutting increased BVOC emissions by more than 20-fold, and the induced compounds were mainly eight-carbon compounds and sesquiterpenes. In the Deschampsia heath, the overall low BVOC emissions originated mainly from soil. In the mixed heath, root, and soil emissions were negligible. Net BVOC emissions from roots and soil of these well-drained heaths do not significantly contribute to ecosystem emissions, at least outside the growing season. If insect outbreaks become more frequent with climate change, ecosystem BVOC emissions will periodically increase due to herbivory.

  2. Measurements of biogenic hydrocarbons and carbonyl compounds emitted by trees from temperate warm Atlantic rainforest, Brazil.

    Science.gov (United States)

    Carvalho, Lilian R F; Vasconcellos, Perola C; Mantovani, Waldir; Pool, Cristina S; Pisani, Silvana O

    2005-05-01

    This study is part of a three-year project on biogenic volatile organic compound (VOC) emissions from trees of the temperate warm Atlantic rainforest found in the metropolitan area of Sao Paulo City (MASP). No study of VOC emission rates from plant species has been carried out in the temperate warm Atlantic rainforest of Brazil prior to this work. Eleven species were selected (Alchornea sidifolia, Cupania oblongifolia, Cecropia pachystachia, Syagrus romanzoffiana, Casearia sylvestris, Machaerium villosum, Trema micrantha, Croton floribundus, Myrcia rostrata, Solanum erianthum and Ficus insipida) and some of them were studied in urban, sub-urban and forest areas inside the MASP in order to evaluate biogenic VOC composition at sites characterized by different emission sources. Biogenic VOC emissions were determined by placing branches of plants in a dynamic enclosure system, an all-Teflon cuvette, and by sampling the compounds in the air leaving the cuvette. Pre-concentration using adsorbents to retain the VOC, followed by GC-MS after thermal desorption of the sample, was employed to determine the amount of biogenic hydrocarbons. The collection of carbonyl compounds on a 2,4-dinitrophenylhydrazine coated silica followed by HPLC-UV was used to analyze low molecular weight carbonyl compounds. Emission rates of isoprene, alpha-pinene, camphene and limonene ranged from 0.01 to 2.16 microg C h(-1) g(-1) and emission rates of aldehydes (C(2)-C(6)), acrolein, methacrolein and 2-butanone ranged from 1.5 x 10(-2) to 2.3 micro g C h(-1) g (-1). Ambient and leaf temperatures, relative humidity, light intensity, O(3) and NO(x) levels in the local atmosphere were monitored during experiments. It was possible to identify different biogenic VOCs emitted from typical plants of temperate warm Atlantic rainforest. The emission rates were reported as a function of the type of site investigated and were only provided for compounds for which quantification was feasible. Other biogenic

  3. Spatio-temporal variation of biogenic volatile organic compounds emissions in China

    International Nuclear Information System (INIS)

    Li, L.Y.; Chen, Y.; Xie, S.D.

    2013-01-01

    Aiming to reduce the large uncertainties of biogenic volatile organic compounds (BVOCs) emissions estimation, the emission inventory of BVOCs in China at a high spatial and temporal resolution of 36 km × 36 km and 1 h was established using MEGANv2.1 with MM5 providing high-resolution meteorological data, based on the most detailed and latest vegetation investigations. BVOC emissions from 82 plant functional types in China were computed firstly. More local species-specific emission rates were developed combining statistical analysis and category classification, and the leaf biomass was estimated based on vegetation volume and production with biomass-apportion models. The total annual BVOC emissions in 2003 were 42.5 Tg, including isoprene 23.4 Tg, monoterpene 5.6 Tg, sesquiterpene 1.0 Tg, and other VOCs (OVOCs) 12.5 Tg. Subtropical and tropical evergreen and deciduous broadleaf shrubs, Quercus, and bamboo contributed more than 45% to the total BVOC emissions. The highest biogenic emissions were found over northeastern, southeastern, and southwestern China. Strong seasonal pattern was observed with the highest BVOC emissions in July and the lowest in January and December, with daily emission peaked at approximately 13:00 or 14:00 local time. -- Highlights: •An emission inventory of BVOCs in China at a high spatial and temporal resolution of 36 km and 1 h is established. •High-resolution meteorological data simulated by MM5 is used. •We update the land cover data used in MEGAN based on the most detailed and latest vegetation investigations. •A new vegetation classification with 82 plant functional types is developed in MEGAN. •The leaf biomass is estimated based on vegetation volume and production with biomass-apportion models. -- An emission inventory of BVOCs in China was established based on the most detailed and latest vegetation investigations, and high-resolution meteorological data

  4. Datasets used in the manuscript titled "Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms and organic aerosol"

    Data.gov (United States)

    U.S. Environmental Protection Agency — This dataset documents that all of the data used in the manuscript "Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic...

  5. Biogenic Volatile Organic Compound Emission Rates From Urban Vegetation in Southeast China

    Science.gov (United States)

    Baker, B.; Graessli, M.; Bai, J.; Huang, A.; Li, N.; Guenther, A.

    2005-12-01

    Currently, the country of China is growing economically at an extraordinary pace. With this growth comes an increase in emissions of anthropogenic pollutants such as hydrocarbons and nitrogen oxides from factories and vehicles. To accurately determine the effects of these pollutants on regional ozone production, and to best determine mitigation strategies, biogenic volatile organic compound (BVOC) emissions must be considered in regional atmospheric chemistry models. To date, few studies have been carried out to determine BVOC emission factors for plant species that occur in China. Considering that approximately 20% of the world's population resides in this region, it is important to develop accurate databases for BVOC emissions for the country of China. This experiment took place during May and June of 2005 and was based in the Fairy Lake Botanical Gardens (FLBG) located to the northeast of the city of Shenzhen. The city of Shenzhen is located in southeast China in Guangdong province. The city was designated a 'special economic zone' in 1980 and has experienced intense population and economic growth ever since. The dense city is surrounded by hilly rural areas of forest on three sides, and Hong Kong to the south. The purpose of the experiment was to evaluate emissions of BVOC from plants that are important to the Shenzhen region as well as to southeastern China. Over 150 species of plants were screened for emissions of isoprene and monoterpenes. These species include most of the dominant trees and shrubs planted in the Shenzhen area. Samples were collected at the FLBG as well as at various locations around the city of Shenzhen. BVOC emission samples were collected and analyzed in one of two ways. First, a Teflon enclosure was placed over a plant's branch with a constant flow of ambient air passing through the enclosure. Samples were then pumped into a Teflon bag for analysis. Samples were analyzed within 30 minutes by gas chromatography (GC) with either a photo

  6. Exploring sources of biogenic secondary organic aerosol compounds using chemical analysis and the FLEXPART model

    Science.gov (United States)

    Martinsson, Johan; Monteil, Guillaume; Sporre, Moa K.; Kaldal Hansen, Anne Maria; Kristensson, Adam; Eriksson Stenström, Kristina; Swietlicki, Erik; Glasius, Marianne

    2017-09-01

    Molecular tracers in secondary organic aerosols (SOAs) can provide information on origin of SOA, as well as regional scale processes involved in their formation. In this study 9 carboxylic acids, 11 organosulfates (OSs) and 2 nitrooxy organosulfates (NOSs) were determined in daily aerosol particle filter samples from Vavihill measurement station in southern Sweden during June and July 2012. Several of the observed compounds are photo-oxidation products from biogenic volatile organic compounds (BVOCs). Highest average mass concentrations were observed for carboxylic acids derived from fatty acids and monoterpenes (12. 3 ± 15. 6 and 13. 8 ± 11. 6 ng m-3, respectively). The FLEXPART model was used to link nine specific surface types to single measured compounds. It was found that the surface category sea and ocean was dominating the air mass exposure (56 %) but contributed to low mass concentration of observed chemical compounds. A principal component (PC) analysis identified four components, where the one with highest explanatory power (49 %) displayed clear impact of coniferous forest on measured mass concentration of a majority of the compounds. The three remaining PCs were more difficult to interpret, although azelaic, suberic, and pimelic acid were closely related to each other but not to any clear surface category. Hence, future studies should aim to deduce the biogenic sources and surface category of these compounds. This study bridges micro-level chemical speciation to air mass surface exposure at the macro level.

  7. Exploring sources of biogenic secondary organic aerosol compounds using chemical analysis and the FLEXPART model

    Directory of Open Access Journals (Sweden)

    J. Martinsson

    2017-09-01

    Full Text Available Molecular tracers in secondary organic aerosols (SOAs can provide information on origin of SOA, as well as regional scale processes involved in their formation. In this study 9 carboxylic acids, 11 organosulfates (OSs and 2 nitrooxy organosulfates (NOSs were determined in daily aerosol particle filter samples from Vavihill measurement station in southern Sweden during June and July 2012. Several of the observed compounds are photo-oxidation products from biogenic volatile organic compounds (BVOCs. Highest average mass concentrations were observed for carboxylic acids derived from fatty acids and monoterpenes (12. 3 ± 15. 6 and 13. 8 ± 11. 6 ng m−3, respectively. The FLEXPART model was used to link nine specific surface types to single measured compounds. It was found that the surface category sea and ocean was dominating the air mass exposure (56 % but contributed to low mass concentration of observed chemical compounds. A principal component (PC analysis identified four components, where the one with highest explanatory power (49 % displayed clear impact of coniferous forest on measured mass concentration of a majority of the compounds. The three remaining PCs were more difficult to interpret, although azelaic, suberic, and pimelic acid were closely related to each other but not to any clear surface category. Hence, future studies should aim to deduce the biogenic sources and surface category of these compounds. This study bridges micro-level chemical speciation to air mass surface exposure at the macro level.

  8. Incremental Reactivity Effects of Anthropogenic and Biogenic Volatile Organic Compounds on Secondary Organic Aerosol Formation

    Science.gov (United States)

    Kacarab, M.; Li, L.; Carter, W. P. L.; Cocker, D. R., III

    2015-12-01

    Two surrogate reactive organic gas (ROG) mixtures were developed to create a controlled reactivity environment simulating different urban atmospheres with varying levels of anthropogenic (e.g. Los Angeles reactivity) and biogenic (e.g. Atlanta reactivity) influences. Traditional chamber experiments focus on the oxidation of one or two volatile organic compound (VOC) precursors, allowing the reactivity of the system to be dictated by those compounds. Surrogate ROG mixtures control the overall reactivity of the system, allowing for the incremental aerosol formation from an added VOC to be observed. The surrogate ROG mixtures were developed based on that used to determine maximum incremental reactivity (MIR) scales for O3 formation from VOC precursors in a Los Angeles smog environment. Environmental chamber experiments were designed to highlight the incremental aerosol formation in the simulated environment due to the addition of an added anthropogenic (aromatic) or biogenic (terpene) VOC. All experiments were conducted in the UC Riverside/CE-CERT dual 90m3 environmental chambers. It was found that the aerosol precursors behaved differently under the two altered reactivity conditions, with more incremental aerosol being formed in the anthropogenic ROG system than in the biogenic ROG system. Further, the biogenic reactivity condition inhibited the oxidation of added anthropogenic aerosol precursors, such as m-xylene. Data will be presented on aerosol properties (density, volatility, hygroscopicity) and bulk chemical composition in the gas and particle phases (from a SYFT Technologies selected ion flow tube mass spectrometer, SIFT-MS, and Aerodyne high resolution time of flight aerosol mass spectrometer, HR-ToF-AMS, respectively) comparing the two controlled reactivity systems and single precursor VOC/NOx studies. Incremental aerosol yield data at different controlled reactivities provide a novel and valuable insight in the attempt to extrapolate environmental chamber

  9. Biogenic volatile organic compounds from the urban forest of the Metropolitan Region, Chile

    International Nuclear Information System (INIS)

    Préndez, Margarita; Carvajal, Virginia; Corada, Karina; Morales, Johanna; Alarcón, Francis; Peralta, Hugo

    2013-01-01

    Tropospheric ozone is a secondary pollutant whose primary sources are volatile organic compounds and nitrogen oxides. The national standard is exceeded on a third of summer days in some areas of the Chilean Metropolitan Region (MR). This study reports normalized springtime experimental emissions factors (EF) for biogenic volatile organic compounds from tree species corresponding to approximately 31% of urban trees in the MR. A Photochemical Ozone Creation Index (POCI) was calculated using Photochemical Ozone Creation Potential of quantified terpenes. Ten species, natives and exotics, were analysed using static enclosure technique. Terpene quantification was performed using GC-FID, thermal desorption, cryogenic concentration and automatic injection. Observed EF and POCI values for terpenes from exotic species were 78 times greater than native values; within the same family, exotic EF and POCI values were 28 and 26 times greater than natives. These results support reforestation with native species for improved urban pollution management. -- First experimental determination of the emission factors of biogenic volatile organic compounds in the urban forest of the Metropolitan Region, Chile

  10. Tethered balloon measurements of biogenic volatile organic compounds at a Boreal forest site

    Directory of Open Access Journals (Sweden)

    C. Spirig

    2004-01-01

    Full Text Available Measurements of biogenic volatile organic compounds (VOCs were performed at Hyytiälä, a Boreal forest site in Southern Finland as part of the OSOA (origin and formation of secondary organic aerosol project in August 2001. At this site, frequent formation of new particles has been observed and the role of biogenic VOCs in this process is still unclear. Tethered balloons served as platforms to collect VOC samples within the planetary boundary layer at heights up to 1.2 km above ground during daytime. Mean mixed layer concentrations of total monoterpenes varied between 10 and 170 pptv, with a-pinene, limonene and D3-carene as major compounds, isoprene was detected at levels of 2-35 pptv. A mixed layer gradient technique and a budget approach are applied to derive surface fluxes representative for areas of tens to hundreds of square kilometres. Effects of spatial heterogeneity in surface emissions are examined with a footprint analysis. Depending on the source area considered, mean afternoon emissions of the sum of terpenes range between 180 and 300 mg m-2 h-1 for the period of 2-12 August 2001. Surface fluxes close to Hyytiälä were higher than the regional average, and agree well with mean emissions predicted by a biogenic VOC emission model. Total rates of monoterpene oxidation were calculated with a photochemical model. The rates did not correlate with the occurrence of new particle formation, but the ozone pathway was of more importance on days with particle formation. Condensable vapour production from the oxidation of monoterpenes throughout the mixed layer can only account for a fraction of the increase in aerosol mass observed at the surface.

  11. Characterization of biogenic volatile organic compounds (BVOCs) in cleaning reagents and air fresheners in Hong Kong

    Science.gov (United States)

    Huang, Yu; Ho, Steven Sai Hang; Ho, Kin Fai; Lee, Shun Cheng; Gao, Yuan; Cheng, Yan; Chan, C. S.

    2011-11-01

    Biogenic volatile organic compounds (BVOCs) emitted from cleaning products and air fresheners indoors are prone to oxidation resulting in the formation of secondary pollutants that can pose health risks on residents. In this study, a solid phase microextraction (SPME) coupled with gas chromatography/mass spectrometry (SPME-GC/MS) method was applied for the determination of BVOCs compositions in three categories of cleaning products including floor cleaners (FC), kitchen cleaners (KC) and dishwashing detergents (DD), and also air fresheners (AF). The analysis results demonstrated that chemical composition and concentration of individual BVOC varied broadly with household products in the view of their different functions and scents as indicated on the labels. The concentration of total BVOCs for sample FC1 was the highest up to 4146.0 μg g -1, followed by FC2 of 264.6 μg g -1, FC4 of 249.3 μg g -1 and FC3 of 139.2 μg g -1. D-limonene was the most abundant detected BVOCs in KC samples with the chemical composition varying from 19.6 ± 1.0 to 1513.0 ± 37.1 μg g -1. For dishwashing detergents, only D-limonene was detected and quantified. The BVOCs compositions of air freshener samples are much more complicated. It was estimated that the consumption of floor cleaners contributed 51% of the total BVOCs amount indoors in Hong Kong, followed by air fresheners 42%, kitchen cleaners 5% and dishwashing detergents 2%.

  12. Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic aerosol

    Energy Technology Data Exchange (ETDEWEB)

    Ng, Nga Lee; Brown, Steven S.; Archibald, Alexander T.; Atlas, Elliot; Cohen, Ronald C.; Crowley, John N.; Day, Douglas A.; Donahue, Neil M.; Fry, Juliane L.; Fuchs, Hendrik; Griffin, Robert J.; Guzman, Marcelo I.; Herrmann, Hartmut; Hodzic, Alma; Iinuma, Yoshiteru; Jimenez, José L.; Kiendler-Scharr, Astrid; Lee, Ben H.; Luecken, Deborah J.; Mao, Jingqiu; McLaren, Robert; Mutzel, Anke; Osthoff, Hans D.; Ouyang, Bin; Picquet-Varrault, Benedicte; Platt, Ulrich; Pye, Havala O. T.; Rudich, Yinon; Schwantes, Rebecca H.; Shiraiwa, Manabu; Stutz, Jochen; Thornton, Joel A.; Tilgner, Andreas; Williams, Brent J.; Zaveri, Rahul A.

    2017-01-01

    Oxidation of biogenic volatile organic compounds (BVOC) by the nitrate radical (NO3) represents one of the important interactions between anthropogenic emissions related to combustion and natural emissions from the biosphere. This interaction has been recognized for more than 3 decades, during which time a large body of research has emerged from laboratory, field, and modeling studies. NO3-BVOC reactions influence air quality, climate and visibility through regional and global budgets for reactive nitrogen (particularly organic nitrates), ozone, and organic aerosol. Despite its long history of research and the significance of this topic in atmospheric chemistry, a number of important uncertainties remain. These include an incomplete understanding of the rates, mechanisms, and organic aerosol yields for NO3-BVOC reactions, lack of constraints on the role of heterogeneous oxidative processes associated with the NO3 radical, the difficulty of characterizing the spatial distributions of BVOC and NO3 within the poorly mixed nocturnal atmosphere, and the challenge of constructing appropriate boundary layer schemes and non-photochemical mechanisms for use in state-of-the-art chemical transport and chemistry–climate models.

    This review is the result of a workshop of the same title held at the Georgia Institute of Technology in June 2015. The first half of the review summarizes the current literature on NO3-BVOC chemistry, with a particular focus on recent advances in instrumentation and models, and in organic nitrate and secondary organic aerosol (SOA) formation chemistry. Building on this current understanding, the second half of the review outlines impacts of NO3-BVOC chemistry on air quality and climate, and suggests critical research needs to better constrain this interaction to improve the predictive capabilities of atmospheric models.

  13. Emissions of isoprenoids and oxygenated biogenic volatile organic compounds from a New England mixed forest

    Directory of Open Access Journals (Sweden)

    K. A. McKinney

    2011-05-01

    Full Text Available Fluxes of biogenic volatile organic compounds, including isoprene, monoterpenes, and oxygenated VOCs measured above a mixed forest canopy in central Massachusetts during the 2005 and 2007 growing seasons are reported. Mixing ratios were measured using proton transfer reaction mass spectrometry (PTR-MS and fluxes computed by the disjunct eddy covariance technique. Isoprene was by far the predominant BVOC emitted at this site, with summer mid-day average fluxes of 5.3 and 4.4 mg m−2 hr−1 in 2005 and 2007, respectively. In comparison, mid-day average fluxes of monoterpenes were 0.21 and 0.15 mg m−2 hr−1 in each of these years. On short times scales (days, the diel pattern in emission rate compared well with a standard emission algorithm for isoprene. The general shape of the seasonal cycle and the observed decrease in isoprene emission rate in early September was, however, not well captured by the model. Monoterpene emission rates exhibited dependence on light as well as temperature, as determined from the improved fit to the observations obtained by including a light-dependent term in the model. The mid-day average flux of methanol from the canopy was 0.14 mg m−2 hr−1 in 2005 and 0.19 mg m−2 hr−1 in 2007, but the maximum flux was observed in spring (29 May 2007, when the flux reached 1.0 mg m−2 hr−1. This observation is consistent with enhanced methanol production during leaf expansion. Summer mid-day fluxes of acetone were 0.15 mg m−2 hr−1 during a short period in 2005, but only 0.03 mg m−2 h−1 averaged over 2007. Episodes of negative fluxes of oxygenated VOCs, particularly acetone, were observed periodically, especially in 2007. Thus, deposition within the canopy could help explain the low season-averaged flux of acetone in 2007. Fluxes of species of biogenic origin

  14. Role of Biogenic Volatile Organic Compounds (BVOC) emitted by urban trees on ozone concentration in cities: A review

    International Nuclear Information System (INIS)

    Calfapietra, C.; Fares, S.; Manes, F.; Morani, A.; Sgrigna, G.; Loreto, F.

    2013-01-01

    Biogenic Volatile Organic Compounds (BVOC) play a critical role in biosphere–atmosphere interactions and are key factors of the physical and chemical properties of the atmosphere and climate. However, few studies have been carried out at urban level to investigate the interactions between BVOC emissions and ozone (O 3 ) concentration. The contribution of urban vegetation to the load of BVOCs in the air and the interactions between biogenic emissions and urban pollution, including the likely formation of O 3 , needs to be investigated, but also the effects of O 3 on the biochemical reactions and physiological conditions leading to BVOC emissions are largely unknown. The effect of BVOC emission on the O 3 uptake by the trees is further complicating the interactions BVOC–O 3 , thus making challenging the estimation of the calculation of BVOC effect on O 3 concentration at urban level. -- Highlights: • We examine the role of BVOC emitted from urban trees for O 3 formation in our cities. • We state that the high BVOC emitter trees are dangerous especially in VOC limited conditions for ozone formation. • We conclude that the choice of the tree species can be very important for the quality of the air in our cities. -- BVOC emission from urban trees can be very important for ozone concentration

  15. Soot Nanoparticles Could Partake in Nucleation of Biogenic Particles in the Atmosphere: Using Fullerene as a Model Compound

    Directory of Open Access Journals (Sweden)

    Yiwen Liu

    2016-03-01

    Full Text Available The detection of existence of fullerenes (C60 and C70 makes it necessary to explore whether soot nanoparticles can participate in new nanometer-sized particle formation and growth in the atmosphere. This study describes a theoretical investigation at multiple levels on the role of the fullerenes (as model compounds to represent nanoparticles of soot in the formation of complexes with a common atmospheric nucleating precursor (sulfuric acid, SA and a biogenic organic acid (cis-pinonic acid, CPA, as well as initial growth of nano-sized biogenic aerosols. Quantum chemical density-functional theory calculations identify the formation of stable fullerene-[CPA-SA] ternary complexes, which likely leads to an enhanced nucleation of SA with CPA. Relevant thermochemical parameters including the changes of Gibbs free energy, enthalpy, and entropy for the complex formation also support that fullerene-[CPA-SA] is most likely to be a newly formed nuclei. The sizes of the critical nucleus of the fullerene-[CPA-SA-H2O] systems were found to be approximately 1.3 nm by large-scale molecular dynamics simulations. This study may provide a new insight into the mechanisms underlying the formation of new particle in the atmospheric environment.

  16. Organic compounds in aerosols from selected European sites - Biogenic versus anthropogenic sources

    Science.gov (United States)

    Alves, Célia; Vicente, Ana; Pio, Casimiro; Kiss, Gyula; Hoffer, Andras; Decesari, Stefano; Prevôt, André S. H.; Minguillón, María Cruz; Querol, Xavier; Hillamo, Risto; Spindler, Gerald; Swietlicki, Erik

    2012-11-01

    Atmospheric aerosol samples from a boreal forest (Hyytiälä, April 2007), a rural site in Hungary (K-puszta, summer 2008), a polluted rural area in Italy (San Pietro Capofiume, Po Valley, April 2008), a moderately polluted rural site in Germany located on a meadow (Melpitz, May 2008), a natural park in Spain (Montseny, March 2009) and two urban background locations (Zurich, December 2008, and Barcelona, February/March 2009) were collected. Aliphatics, polycyclic aromatic hydrocarbons, carbonyls, sterols, n-alkanols, acids, phenolic compounds and anhydrosugars in aerosols were chemically characterised by gas chromatography-mass spectrometry, along with source attribution based on the carbon preference index (CPI), the ratios between the unresolved and the chromatographically resolved aliphatics, the contribution of wax n-alkanes, n-alkanols and n-alkanoic acids from plants, diagnostic ratios of individual target compounds and source-specific markers to organic carbon ratios. In spite of transboundary pollution episodes, Hyytiälä registered the lowest levels among all locations. CPI values close to 1 for the aliphatic fraction of the Montseny aerosol suggest that the anthropogenic input may be associated with the transport of aged air masses from the surrounding industrial/urban areas, which superimpose the locally originated hydrocarbons with biogenic origin. Aliphatic and aromatic hydrocarbons in samples from San Pietro Capofiume reveal that fossil fuel combustion is a major source influencing the diel pattern of concentrations. This source contributed to 25-45% of the ambient organic carbon (OC) at the Po Valley site. Aerosols from the German meadow presented variable contributions from both biogenic and anthropogenic sources. The highest levels of vegetation wax components and biogenic secondary organic aerosol (SOA) products were observed at K-puszta, while anthropogenic SOA compounds predominated in Barcelona. The primary vehicular emissions in the Spanish

  17. Variation in biogenic volatile organic compound emission pattern of Fagus sylvatica L. due to aphid infection

    Science.gov (United States)

    Joó, É.; Van Langenhove, H.; Šimpraga, M.; Steppe, K.; Amelynck, C.; Schoon, N.; Müller, J.-F.; Dewulf, J.

    2010-01-01

    Volatile organic compounds (VOCs) have been the focus of interest to understand atmospheric processes and their consequences in formation of ozone or aerosol particles; therefore, VOCs contribute to climate change. In this study, biogenic VOCs (BVOCs) emitted from Fagus sylvatica L. trees were measured in a dynamic enclosure system. In total 18 compounds were identified: 11 monoterpenes (MT), an oxygenated MT, a homoterpene (C 14H 18), 3 sesquiterpenes (SQT), isoprene and methyl salicylate. The frequency distribution of the compounds was tested to determine a relation with the presence of the aphid Phyllaphis fagi L. It was found that linalool, (E)-β-ocimene, α-farnesene and a homoterpene identified as (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT), were present in significantly more samples when infection was present on the trees. The observed emission spectrum from F. sylvatica L. shifted from MT to linalool, α-farnesene, (E)-β-ocimene and DMNT due to the aphid infection. Sabinene was quantitatively the most prevalent compound in both, non-infected and infected samples. In the presence of aphids α-farnesene and linalool became the second and third most important BVOC emitted. According to our investigation, the emission fingerprint is expected to be more complex than commonly presumed.

  18. Arctic Vegetation under Climate Change – Biogenic Volatile Organic Compound Emissions and Leaf Anatomy

    DEFF Research Database (Denmark)

    Schollert, Michelle

    common arctic plant species, illustrating the great importance of vegetation composition for determining ecosystem BVOC emissions. Additionally, this thesis assesses the BVOC emission responses in common arctic plant species to effects of climate change: warming, shading and snow addition. Against...... treatment effects on BVOC emissions. Furthermore, the anatomy of arctic plants seems to respond differently to warming than species at lower latitudes. The results in this thesis demonstrate the complexity of the effects of climate change on BVOC emissions and leaf anatomy of arctic plant species......Biogenic volatile organic compounds (BVOCs) emitted from terrestrial vegetation are highly reactive non-methane hydrocarbons which participate in oxidative reactions in the atmosphere prolonging the lifetime of methane and contribute to the formation of secondary organic aerosols. The BVOC...

  19. Arctic emissions of biogenic volatile organic compounds – from plants, litter and soils

    DEFF Research Database (Denmark)

    Svendsen, Sarah Hagel

    Significant amounts of biogenic volatile organic compounds are emitted from terrestrial ecosystems. These emissions may influence the atmospheric chemistry and the climate. Climate warming will be most pronounced in the Arctic and this will likely have a large effect on the BVOC emissions from...... these areas. Despite this, BVOC emissions from arctic ecosystems are sparsely studied and measurements of high arctic soil and litter BVOC emissions are completely lacking. In this thesis, I have studied BVOC emissions from a high arctic soil moisture gradient, from decomposing shrub litter from high and low...... arctic heaths at increasing temperature and from high arctic active layer soils and permafrost soils during a thaw event and at increasing temperature. Ecosystem BVOC emissions were measured in situ and BVOC emissions from soils and litter were measured from laboratory incubations. BVOCs were sampled...

  20. Interfacial photochemistry of biogenic surfactants: a major source of abiotic volatile organic compounds.

    Science.gov (United States)

    Brüggemann, Martin; Hayeck, Nathalie; Bonnineau, Chloé; Pesce, Stéphane; Alpert, Peter A; Perrier, Sébastien; Zuth, Christoph; Hoffmann, Thorsten; Chen, Jianmin; George, Christian

    2017-08-24

    Films of biogenic compounds exposed to the atmosphere are ubiquitously found on the surfaces of cloud droplets, aerosol particles, buildings, plants, soils and the ocean. These air/water interfaces host countless amphiphilic compounds concentrated there with respect to in bulk water, leading to a unique chemical environment. Here, photochemical processes at the air/water interface of biofilm-containing solutions were studied, demonstrating abiotic VOC production from authentic biogenic surfactants under ambient conditions. Using a combination of online-APCI-HRMS and PTR-ToF-MS, unsaturated and functionalized VOCs were identified and quantified, giving emission fluxes comparable to previous field and laboratory observations. Interestingly, VOC fluxes increased with the decay of microbial cells in the samples, indicating that cell lysis due to cell death was the main source for surfactants and VOC production. In particular, irradiation of samples containing solely biofilm cells without matrix components exhibited the strongest VOC production upon irradiation. In agreement with previous studies, LC-MS measurements of the liquid phase suggested the presence of fatty acids and known photosensitizers, possibly inducing the observed VOC production via peroxy radical chemistry. Up to now, such VOC emissions were directly accounted to high biological activity in surface waters. However, the results obtained suggest that abiotic photochemistry can lead to similar emissions into the atmosphere, especially in less biologically-active regions. Furthermore, chamber experiments suggest that oxidation (O 3 /OH radicals) of the photochemically-produced VOCs leads to aerosol formation and growth, possibly affecting atmospheric chemistry and climate-related processes, such as cloud formation or the Earth's radiation budget.

  1. INFLUENCE OF STATIC MAGNETIC FIELD ON REMOVAL OF BIOGENIC COMPOUNDS FROM DAIRY WASTEWATER IN SEQUENCING BATCH REACTOR

    Directory of Open Access Journals (Sweden)

    Marcin Zieliński

    2017-08-01

    During the research it proved that the use of CMF was conducive to the elimination of biogenic compounds, although the significance of this factor in the majority of variants was not significant. Regardless of the variant of the experiment was observed very high removal efficiency of nitrogen and phosphorus from waste water dairy tested.

  2. Biogenic Volatile Organic Compounds (BVOCs) and their oxidation products at two Mediterranean background sites

    Science.gov (United States)

    Debevec, Cecile; Sauvage, Stephane; Gros, Valerie; Sciare, Jean; Pikridas, Michael; Dusanter, Sebastien; Leonardis, Thierry; Gaudion, Vincent; Depelchin, Laurence; Fronval, Isabelle; Sarda-Esteve, Roland; Baisnee, Dominique; Vasiliadou, Emily; Savvides, Chrysanthos; Kalogridis, Cerise; Michoud, Vincent; Locoge, Nadine

    2017-04-01

    nighttime. This nocturnal variability could be driven by nighttime emissions, chemical decay or dynamical processes; all these assumptions will be discussed here. From PMF factors identified, measured oxygenated VOCs were apportioned among their potential different origins (either biogenic or anthropogenic and either primary or secondary). Finally, a parallel between organic aerosol and gas phase composition was conducted to better highlight the relationship between the two phases. The diurnal variability of secondary organic aerosol appeared to be influenced by biogenic contributions. References. Debevec, C., Sauvage, S., Gros, V., Sciare, J., Pikridas, M., Stavroulas, I., Salameh, T., Leonardis, T., Gaudion, V., Depelchin, L., Fronval, I., Sarda-Esteve, R., Baisnee, D., Bonsang, B., Savvides, C., Vrejoussis, M. and Locoge, N.: Origin and variability of volatile organic compounds observed at an Eastern Mediterranean background site (Cyprus), submitted to ACPD. Michoud, V., Sciare, J., Sauvage, S., Dusanter, S., Leonardis, T., Gros, V., Kalogridis, A.-C., Zannoni, N., Féron, A., Petit, J.-E., Creen, V., Baisnée, D., Sarda-Estève, R., Bonnaire, N., Marchand, N., DeWitt, H. L., Pey, J., Colomb, A., Gheussi, F., Szidat, S., Stavroulas, I., Borbon, A. and Locoge, N.: Organic carbon at a remote site of the western Mediterranean Basin: composition, sources and chemistry during the ChArMEx SOP2 field experiment, submitted to ACPD.

  3. Production of extremely low volatile organic compounds from biogenic emissions: Measured yields and atmospheric implications.

    Science.gov (United States)

    Jokinen, Tuija; Berndt, Torsten; Makkonen, Risto; Kerminen, Veli-Matti; Junninen, Heikki; Paasonen, Pauli; Stratmann, Frank; Herrmann, Hartmut; Guenther, Alex B; Worsnop, Douglas R; Kulmala, Markku; Ehn, Mikael; Sipilä, Mikko

    2015-06-09

    Oxidation products of monoterpenes and isoprene have a major influence on the global secondary organic aerosol (SOA) burden and the production of atmospheric nanoparticles and cloud condensation nuclei (CCN). Here, we investigate the formation of extremely low volatility organic compounds (ELVOC) from O3 and OH radical oxidation of several monoterpenes and isoprene in a series of laboratory experiments. We show that ELVOC from all precursors are formed within the first minute after the initial attack of an oxidant. We demonstrate that under atmospherically relevant concentrations, species with an endocyclic double bond efficiently produce ELVOC from ozonolysis, whereas the yields from OH radical-initiated reactions are smaller. If the double bond is exocyclic or the compound itself is acyclic, ozonolysis produces less ELVOC and the role of the OH radical-initiated ELVOC formation is increased. Isoprene oxidation produces marginal quantities of ELVOC regardless of the oxidant. Implementing our laboratory findings into a global modeling framework shows that biogenic SOA formation in general, and ELVOC in particular, play crucial roles in atmospheric CCN production. Monoterpene oxidation products enhance atmospheric new particle formation and growth in most continental regions, thereby increasing CCN concentrations, especially at high values of cloud supersaturation. Isoprene-derived SOA tends to suppress atmospheric new particle formation, yet it assists the growth of sub-CCN-size primary particles to CCN. Taking into account compound specific monoterpene emissions has a moderate effect on the modeled global CCN budget.

  4. Biogenic volatile organic compounds (BVOCs) emissions from Abies alba in a French forest.

    Science.gov (United States)

    Moukhtar, S; Couret, C; Rouil, L; Simon, V

    2006-02-01

    Air quality studies need to be based on accurate and reliable data, particularly in the field of the emissions. Biogenic emissions from forests, crops, and grasslands are now considered as major compounds in photochemical processes. Unfortunately, depending on the type of vegetation, these emissions are not so often reliably defined. As an example, although the silver fir (Abies alba) is a very widespread conifer tree in the French and European areas, its standard emission rate is not available in the literature. This study investigates the isoprene and monoterpenes emission from A. alba in France measured during the fieldwork organised in the Fossé Rhénan, from May to June 2003. A dynamic cuvette method was used. Limonene was the predominant monoterpene emitted, followed by camphene, alpha-pinene and eucalyptol. No isoprene emission was detected. The four monoterpenes measured showed different behaviours according to micrometeorological conditions. In fact, emissions of limonene, alpha-pinene and camphene were temperature-dependant while eucalyptol emissions were temperature and light dependant. Biogenic volatile organic compounds emissions were modeled using information gathered during the field study. Emissions of the three monoterpenes previously quoted were achieved using the monoterpenes algorithm developed by Tingey et al. (1980) [Tingey D, Manning M, Grothaus L, Burns W. Influence of light and temperature on monoterpene emission rates from slash pine. Plant Physiol 1980;65: 797-801.] and the isoprene algorithm [Guenther, A., Monson, R., Fall, R., 1991. Isoprene and monoterpene emission rate variability: observations with eucalyptus and emission rate algorithm development. J Geophys Res 26A: 10799-10808.]; [Guenther, A., Zimmerman, P., Harley, P., Monson, R., Fall, R., 1993. Isoprene and monoterpene emission rate variability: model evaluation and sensitivity analysis. J Geophys Res 98D: 12609-12617.]) was used for the eucalyptol emission. With these

  5. The atmospheric potential of biogenic volatile organic compounds from needles of white pine (Pinus strobus) in Northern Michigan

    Science.gov (United States)

    Toma, S.; Bertman, S.

    2012-02-01

    The key role that biogenic volatile organic compounds (BVOC) play in atmospheric chemistry requires a detailed understanding of how BVOC concentrations will be affected by environmental change. Large-scale screening of BVOC emissions from whole forest ecosystems is difficult with enclosure methods. Leaf composition of BVOC, as a surrogate for direct emissions, can more easily reflect the distribution of BVOC compounds in a forest. In this study, BVOC composition in needles of 92 white pine trees (Pinus strobus), which are becoming a large part of Midwest forests, are tracked for three summers at the University of Michigan Biological Station (UMBS). α-Pinene, the dominant terpene in all samples, accounts for 30-50% of all terpenes on a mole basis. The most abundant sesquiterpenoid was a C15 alcohol identified as germacrene D-4-ol. The relationship between limonene and total other monoterpenes shows two distinct trends in the population of these forests. About 14% (n = 13) of the trees showed high levels of limonene (up to 36% of the total BVOC) in the same trees every year. Assuming that needle concentrations scale with emission rate, we estimate that hydroxyl radical reactivity due to reaction with monoterpenes from white pine increases approximately 6% at UMBS when these elevated concentrations are included. We suggest that chemotypic variation within forests has the potential to affect atmospheric chemistry and that large-scale screening of BVOC can be used to study the importance of BVOC variation.

  6. SOA formation by biogenic and carbonyl compounds: data evaluation and application.

    Science.gov (United States)

    Ervens, Barbara; Kreidenweis, Sonia M

    2007-06-01

    The organic fraction of atmospheric aerosols affects the physical and chemical properties of the particles and their role in the climate system. Current models greatly underpredict secondary organic aerosol (SOA) mass. Based on a compilation of literature studies that address SOA formation, we discuss different parameters that affect the SOA formation efficiency of biogenic compounds (alpha-pinene, isoprene) and aliphatic aldehydes (glyoxal, hexanal, octanal, hexadienal). Applying a simple model, we find that the estimated SOA mass after one week of aerosol processing under typical atmospheric conditions is increased by a few microg m(-3) (low NO(x) conditions). Acid-catalyzed reactions can create > 50% more SOA mass than processes under neutral conditions; however, other parameters such as the concentration ratio of organics/NO(x), relative humidity, and absorbing mass are more significant. The assumption of irreversible SOA formation not limited by equilibrium in the particle phase or by depletion of the precursor leads to unrealistically high SOA masses for some of the assumptions we made (surface vs volume controlled processes).

  7. Biogenic volatile organic compound emissions along a high arctic soil moisture gradient.

    Science.gov (United States)

    Svendsen, Sarah Hagel; Lindwall, Frida; Michelsen, Anders; Rinnan, Riikka

    2016-12-15

    Emissions of biogenic volatile organic compounds (BVOCs) from terrestrial ecosystems are important for the atmospheric chemistry and the formation of secondary organic aerosols, and may therefore influence the climate. Global warming is predicted to change patterns in precipitation and plant species compositions, especially in arctic regions where the temperature increase will be most pronounced. These changes are potentially highly important for the BVOC emissions but studies investigating the effects are lacking. The aim of this study was to investigate the quality and quantity of BVOC emissions from a high arctic soil moisture gradient extending from dry tundra to a wet fen. Ecosystem BVOC emissions were sampled five times in the July-August period using a push-pull enclosure technique, and BVOCs trapped in absorbent cartridges were analyzed using gas chromatography-mass spectrometry. Plant species compositions were estimated using the point intercept method. In order to take into account important underlying ecosystem processes, gross ecosystem production, ecosystem respiration and net ecosystem production were measured in connection with chamber-based BVOC measurements. Highest emissions of BVOCs were found from vegetation communities dominated by Salix arctica and Cassiope tetragona, which had emission profiles dominated by isoprene and monoterpenes, respectively. These results show that emissions of BVOCs are highly dependent on the plant cover supported by the varying soil moisture, suggesting that high arctic BVOC emissions may affect the climate differently if soil water content and plant cover change. Copyright © 2016 Elsevier B.V. All rights reserved.

  8. Field measurements of biogenic volatile organic compounds in the atmosphere using solid-phase microextraction Arrow

    Science.gov (United States)

    Feijó Barreira, Luís Miguel; Duporté, Geoffroy; Rönkkö, Tuukka; Parshintsev, Jevgeni; Hartonen, Kari; Hyrsky, Lydia; Heikkinen, Enna; Jussila, Matti; Kulmala, Markku; Riekkola, Marja-Liisa

    2018-02-01

    Biogenic volatile organic compounds (BVOCs) emitted by terrestrial vegetation participate in a diversity of natural processes. These compounds impact both short-range processes, such as on plant protection and communication, and long-range processes, for example by participating in aerosol particle formation and growth. The biodiversity of plant species around the Earth, the vast assortment of emitted BVOCs, and their trace atmospheric concentrations contribute to the substantial remaining uncertainties about the effects of these compounds on atmospheric chemistry and physics, and call for the development of novel collection devices that can offer portability with improved selectivity and capacity. In this study, a novel solid-phase microextraction (SPME) Arrow sampling system was used for the static and dynamic collection of BVOCs from a boreal forest, and samples were subsequently analyzed on site by gas chromatography-mass spectrometry (GC-MS). This system offers higher sampling capacity and improved robustness when compared to traditional equilibrium-based SPME techniques, such as SPME fibers. Field measurements were performed in summer 2017 at the Station for Measuring Ecosystem-Atmosphere Relations (SMEAR II) in Hyytiälä, Finland. Complementary laboratory tests were also performed to compare the SPME-based techniques under controlled experimental conditions and to evaluate the effect of temperature and relative humidity on their extraction performance. The most abundant monoterpenes and aldehydes were successfully collected. A significant improvement on sampling capacity was observed with the new SPME Arrow system over SPME fibers, with collected amounts being approximately 2 × higher for monoterpenes and 7-8 × higher for aldehydes. BVOC species exhibited different affinities for the type of sorbent materials used (polydimethylsiloxane (PDMS)-carbon wide range (WR) vs. PDMS-divinylbenzene (DVB)). Higher extraction efficiencies were obtained with dynamic

  9. Approaches for quantifying reactive and low-volatility biogenic organic compound emissions by vegetation enclosure techniques - part B: applications.

    Science.gov (United States)

    Ortega, John; Helmig, Detlev; Daly, Ryan W; Tanner, David M; Guenther, Alex B; Herrick, Jeffrey D

    2008-06-01

    The focus of the studies presented in the preceding companion paper (Part A: Review) and here (Part B: Applications) is on defining representative emission rates from vegetation for determining the roles of biogenic volatile organic compound (BVOC) emissions in atmospheric chemistry and aerosol processes. The review of previously published procedures for identifying and quantifying BVOC emissions has revealed a wide variety of experimental methods used by various researchers. Experimental details become increasingly critical for quantitative emission measurements of low volatility monoterpenes (MT) and sesquiterpenes (SQT). These compounds are prone to be lost inadvertently by uptake to materials in contact with the sample air or by reactions with atmospheric oxidants. These losses become more prominent with higher molecular weight compounds, potentially leading to an underestimation of their emission rates. We present MT and SQT emission rate data from numerous experiments that include 23 deciduous tree species, 14 coniferous tree species, 8 crops, and 2 shrubs. These data indicate total, normalized (30 degrees C) basal emission rates from emissions have exponential dependencies on temperature (i.e. rates are proportional to e(betaT)). The inter-quartile range of beta-values for MT was between 0.12 and 0.17K(-1), which is higher than the value commonly used in models (0.09K(-1)). However many of the MT emissions also exhibited light dependencies, making it difficult to separate light and temperature influences. The primary light-dependent MT was ocimene, whose emissions were up to a factor of 10 higher than light-independent MT emissions. The inner-quartile range of beta-values for SQT was between 0.15 and 0.21K(-1).

  10. Biogenic volatile organic compound emissions from a lowland tropical wet forest in Costa Rica

    Energy Technology Data Exchange (ETDEWEB)

    Geron, C. [United States Environmental Protection Agency, Research Triangle Park, NC (United States). National Risk Management Research Lab.; Guenther, A.; Greenberg, J. [National Center for Atmospheric Research, Boulder, CO (United States); Loescher, H.W. [University of Florida, Gainesville, FL (United States). School of Forest Resources and Conservation; Clark, D. [University of Missouri-St. Louis, MS (United States). Dept. of Biology; Baker, B. [South Dakota School of Mines and Technology, Rapid City, SD (United States)

    2002-08-01

    Twenty common plant species were screened for emissions of biogenic volatile organic compounds (BVOCs) at a lowland tropical wet forest site in Costa Rica. Ten of the species examined emitted substantial quantities of isoprene. These species accounted for 35-50% of the total basal area of old-growth forest on the major edaphic site types, indicating that a high proportion of the canopy leaf area is a source of isoprene. A limited number of canopy-level BVOC flux measurements were also collected by relaxed eddy accumulation (REA). These measurements verify that the forest canopy in this region is indeed a significant source of isoprene. In addition, REA fluxes of methanol and especially acetone were also significant, exceeding model estimates and warranting future investigation at this site. Leaf monoterpene emissions were non-detectable or very low from the species surveyed, and ambient concentrations and REA fluxes likewise were very low. Although the isoprene emission rates reported here are largely consistent with phylogenetic relations found in other studies (at the family, genus, and species levels), two species in the family Mimosaceae, a group previously found to consist largely of non-isoprene emitters, emitted significant quantities of isoprene. One of these, Pentaclethra macroloba (Willd.) Kuntze, is by far the most abundant canopy tree species in the forests of this area, composing 30-40% of the total basal area. The other, Zygia longifolia (Humb. and Bonpl.) Britton and Rose is a common riparian species. Our results suggest that the source strength of BVOCs is important not only to tropical atmospheric chemistry, but also may be important in determining net ecosystem carbon exchange.(author)

  11. Concentrations and fluxes of biogenic volatile organic compounds above a Mediterranean macchia ecosystem in western Italy

    Science.gov (United States)

    Davison, B.; Taipale, R.; Langford, B.; Misztal, P.; Fares, S.; Matteucci, G.; Loreto, F.; Cape, J. N.; Rinne, J.; Hewitt, C. N.

    2009-08-01

    Emission rates and concentrations of biogenic volatile organic compounds (BVOCs) were measured at a Mediterranean coastal site at Castelporziano, approximately 25 km south-west of Rome, between 7 May and 3 June 2007, as part of the ACCENT-VOCBAS field campaign on biosphere-atmosphere interactions. Concentrations and emission rates were measured using the disjunct eddy covariance (DEC) method utilizing three different proton transfer reaction mass spectrometers (PTR-MS) so allowing a comparison between the instruments. The high resolution data from the PTR-MS instruments considerably enhances the original BEMA measurements of the mid 1990s. Depending on the measurement period, the volume mixing ratios were in the range 1.6-3.5 ppbv for methanol, 0.44-1.3 ppbv for acetaldehyde, 0.96-2.1 ppbv for acetone, 0.10-0.14 ppbv for isoprene, and 0.13-0.30 ppbv for monoterpenes. A diurnal cycle in mixing ratios was apparent with daytime maxima for methanol, acetaldehyde, acetone, and isoprene. The fluxes ranged from 370-440 μg m-2 h-1 for methanol, 180-360 μg m-2 h-1 for acetaldehyde, 180-450 μg m-2 h-1 for acetone, 71-290 μg m-2 h-1 for isoprene, and 240-860 μg m-2 h-1 for monoterpenes. From the measured flux data (7 May-3 June) an average basal emission rate for the Macchia vegetation was calculated of 430 μg m-2 h-1 for isoprene and 1100 μg m-2 h-1 for monoterpenes.

  12. Reassessment of biogenic volatile organic compound emissions in the Atlanta area

    International Nuclear Information System (INIS)

    Geron, C.D.; Pierce, T.E.; Guenther, A.B.

    1995-01-01

    Localized estimates of biogenic volatile organic compound (BVOC) emissions are important inputs for photochemical oxidant simulation models. Since forest tree species are the primary emitters of BVOCs, it is important to develop reliable estimates of their areal coverage and BVOC emission rates. A new system is used to estimate these emissions in the Atlanta area for specific tree genera at hourly and county levels. The U.S. Department of Agriculture, Forest Service Forest Inventory and Analysis data and an associated urban vegetation survey are used to estimate canopy occupancy by genus in the Atlanta area. A simple canopy model is used to adjust photosynthetically active solar radiation at five vertical levels in the canopy. Lraf temperature and photosynthetically active radiation derived from ambient conditions above the forest canopy are then used to drive empirical equations to estimate genus level emission rates of BVOCs vertically through forest canopies. These genera-level estimates are then aggregated to county and regional levels for input into air quality models and for comparison with (1) the regulatory model currently used and (2) previous estimates for the Atlanta area by local researchers. Estimated hourly emissions from the three approaches during a documented ozone event day are compared. The proposed model yields peak diurnal isoprene emission rates that are over a factor of three times higher than previous estimates. This results in total BVOC emission rates that are roughly a factor of two times higher than previous estimates. These emissions are compared with observed emissions from forests of similar composition. Possible implications for oxidant events are discussed. (author)

  13. Impact of elevated CO2 and O3 concentrations on biogenic volatile organic compounds emissions from Ginkgo biloba.

    Science.gov (United States)

    Li, Dewen; Chen, Ying; Shi, Yi; He, Xingyuan; Chen, Xin

    2009-04-01

    In natural environment with ambient air, ginkgo trees emitted volatile organic compounds 0.18 microg g(-1) h(-1) in July, and 0.92 microg g(-1) h(-1) in September. Isoprene and limonene were the most abundant detected compounds. In September, alpha-pinene accounted for 22.5% of the total. Elevated CO(2) concentration in OTCs increased isoprene emission significantly in July (pemission was enhanced in July and decreased in September by elevated CO(2). Exposed to elevated O(3) increased the isoprene and monoterpenes emissions in July and September, and the total volatile organic compounds emission rates were 0.48 microg g(-1) h(-1) (in July) and 2.24 microg g(-1) h(-1) (in September), respectively. The combination of elevated CO(2) and O(3) did not have any effect on biogenic volatile organic compounds emissions, except increases of isoprene and Delta3-carene in September.

  14. Emissions of terpenoids, benzenoids, and other biogenic gas-phase organic compounds from agricultural crops and their potential implications for air quality

    Science.gov (United States)

    Gentner, D. R.; Ormeño, E.; Fares, S.; Ford, T. B.; Weber, R.; Park, J.-H.; Brioude, J.; Angevine, W. M.; Karlik, J. F.; Goldstein, A. H.

    2014-06-01

    Agriculture comprises a substantial, and increasing, fraction of land use in many regions of the world. Emissions from agricultural vegetation and other biogenic and anthropogenic sources react in the atmosphere to produce ozone and secondary organic aerosol, which comprises a substantial fraction of particulate matter (PM2.5). Using data from three measurement campaigns, we examine the magnitude and composition of reactive gas-phase organic carbon emissions from agricultural crops and their potential to impact regional air quality relative to anthropogenic emissions from motor vehicles in California's San Joaquin Valley, which is out of compliance with state and federal standards for tropospheric ozone PM2.5. Emission rates for a suite of terpenoid compounds were measured in a greenhouse for 25 representative crops from California in 2008. Ambient measurements of terpenoids and other biogenic compounds in the volatile and intermediate-volatility organic compound ranges were made in the urban area of Bakersfield and over an orange orchard in a rural area of the San Joaquin Valley during two 2010 seasons: summer and spring flowering. We combined measurements from the orchard site with ozone modeling methods to assess the net effect of the orange trees on regional ozone. When accounting for both emissions of reactive precursors and the deposition of ozone to the orchard, the orange trees are a net source of ozone in the springtime during flowering, and relatively neutral for most of the summer until the fall, when it becomes a sink. Flowering was a major emission event and caused a large increase in emissions including a suite of compounds that had not been measured in the atmosphere before. Such biogenic emission events need to be better parameterized in models as they have significant potential to impact regional air quality since emissions increase by several factors to over an order of magnitude. In regions like the San Joaquin Valley, the mass of biogenic

  15. Quantification of Biogenic Volatile Organic Compounds with a Flame Ionization Detector Using the Effective Carbon Number Concept

    Science.gov (United States)

    Faiola, C. L.; Erickson, M. H.; Fricaud, V. L.; Wallace, H. W.; Jobson, B. T.; VanReken, T. M.

    2011-12-01

    Biogenic volatile organic compounds (BVOCs) are emitted into the atmosphere by plants and include structurally complex organic molecules such as monoterpenes, sesquiterpenes, and their oxygenated derivatives. These BVOCs are among the principle factors influencing the oxidative capacity of the atmosphere in forested regions. BVOC emission rates are often measured by collecting samples onto adsorptive cartridges in the field and then transporting these samples to the laboratory for chromatographic analysis. One of the most commonly used detectors in gas chromatography is the flame ionization detector (FID) due to its broad linear range, high sensitivity, and predictable response to many compounds. The FID response to saturated aliphatic molecules is proportional to carbon number. However, deviations occur as the complexity of the molecular structure increases. To account for these deviations, Sternberg et al. (1962) developed the effective carbon number (ECN) concept, which describes the number of carbons the FID "effectively" responds to. The ECN of a complex molecule can be estimated from the number and type of functional groups present, allowing an estimate of relative response factors for quantification. This approach is particularly useful for applications where samples contain a mixture of organic compounds and standards are not realistically accessible- a common predicament for environmental measurements. ECNs for a limited number of compounds with varying functional groups have been quantified in previous studies. However, there remain large gaps in the variety of compounds for which published data are available. This results in higher than necessary uncertainties when quantifying compounds that are structurally dissimilar to those that have been reported in the literature. The purpose of this study was to determine the ECN for a variety of terpenoid compounds to enable improved quantification of BVOC measurements. A dynamic dilution system was developed to

  16. Concentrations and fluxes of biogenic volatile organic compounds above a Mediterranean macchia ecosystem in western Italy

    Directory of Open Access Journals (Sweden)

    B. Davison

    2009-08-01

    Full Text Available Emission rates and concentrations of biogenic volatile organic compounds (BVOCs were measured at a Mediterranean coastal site at Castelporziano, approximately 25 km south-west of Rome, between 7 May and 3 June 2007, as part of the ACCENT-VOCBAS field campaign on biosphere–atmosphere interactions. Concentrations and emission rates were measured using the disjunct eddy covariance (DEC method utilizing three different proton transfer reaction mass spectrometers (PTR-MS so allowing a comparison between the instruments. The high resolution data from the PTR-MS instruments considerably enhances the original BEMA measurements of the mid 1990s.

    Depending on the measurement period, the volume mixing ratios were in the range 1.6–3.5 ppbv for methanol, 0.44–1.3 ppbv for acetaldehyde, 0.96–2.1 ppbv for acetone, 0.10–0.14 ppbv for isoprene, and 0.13–0.30 ppbv for monoterpenes. A diurnal cycle in mixing ratios was apparent with daytime maxima for methanol, acetaldehyde, acetone, and isoprene. The fluxes ranged from 370–440 μg m−2 h−1 for methanol, 180–360 μg m−2 h−1 for acetaldehyde, 180–450 μg m−2 h−1 for acetone, 71–290 μg m−2 h−1 for isoprene, and 240–860 μg m−2 h−1 for monoterpenes. From the measured flux data (7 May–3 June an average basal emission rate for the Macchia vegetation was calculated of 430 μg m−2 h−1 for isoprene and 1100 μg m−2 h−1 for monoterpenes.

  17. Fluxes of biogenic volatile organic compounds measured and modelled above a Norway spruce forest

    Science.gov (United States)

    Juráň, Stanislav; Fares, Silvano; Pallozzi, Emanuele; Guidolotti, Gabriele; Savi, Flavia; Alivernini, Alessandro; Calfapietra, Carlo; Večeřová, Kristýna; Křůmal, Kamil; Večeřa, Zbyněk; Cudlín, Pavel; Urban, Otmar

    2016-04-01

    Fluxes of biogenic volatile organic compounds (BVOCs) were investigated at Norway spruce forest at Bílý Kříž in Beskydy Mountains of the Czech Republic during the summer 2014. A proton-transfer-reaction-time-of-flight mass spectrometer (PTR-TOF-MS, Ionicon Analytik, Austria) has been coupled with eddy-covariance system. Additionally, Inverse Lagrangian Transport Model has been used to derive fluxes from concentration gradient of various monoterpenes previously absorbed into n-heptane by wet effluent diffusion denuder with consequent quantification by gas chromatography with mass spectrometry detection. Modelled data cover each one day of three years with different climatic conditions and previous precipitation patterns. Model MEGAN was run to cover all dataset with monoterpene fluxes and measured basal emission factor. Highest fluxes measured by eddy-covariance were recorded during the noon hours, represented particularly by monoterpenes and isoprene. Inverse Lagrangian Transport Model suggests most abundant monoterpene fluxes being α- and β-pinene. Principal component analysis revealed dependencies of individual monoterpene fluxes on air temperature and particularly global radiation; however, these dependencies were monoterpene specific. Relationships of monoterpene fluxes with CO2 flux and relative air humidity were found to be negative. MEGAN model correlated to eddy-covariance PTR-TOF-MS measurement evince particular differences, which will be shown and discussed. Bi-directional fluxes of oxygenated short-chain volatiles (methanol, formaldehyde, acetone, acetaldehyde, formic acid, acetic acid, methyl vinyl ketone, methacrolein, and methyl ethyl ketone) were recorded by PTR-TOF-MS. Volatiles of anthropogenic origin as benzene and toluene were likely transported from the most benzene polluted region in Europe - Ostrava city and adjacent part of Poland around Katowice, where metallurgical and coal mining industries are located. Those were accumulated during

  18. Estimating the biogenic emissions of non-methane volatile organic compounds from the North Western Mediterranean vegetation of Catalonia, Spain.

    Science.gov (United States)

    Parra, R; Gassó, S; Baldasano, J M

    2004-08-15

    An estimation of the magnitude of non-methane volatile organic compounds (NMVOCs) emitted by vegetation in Catalonia (NE of the Iberian Peninsula, Spain), in addition to their superficial and temporal distribution, is presented for policy and scientific (photochemical modelling) purposes. It was developed for the year 2000, for different time resolutions (hourly, daily, monthly and annual) and using a high-resolution land-use map (1-km2 squared cells). Several meteorological surface stations provided air temperature and solar radiation data. An adjusted mathematical emission model taking account of Catalonia's conditions was built into a geographic information system (GIS) software. This estimation uses the latest information, mainly relating to: (1) emission factors; (2) better knowledge of the composition of Catalonia's forest cover; and (3) better knowledge of the particular emission behaviour of some Mediterranean vegetal species. Results depict an annual cycle with increasing values in the March-April period with the highest emissions in July-August, followed by a decrease in October-November. Annual biogenic NMVOCs emissions reach 46.9 kt, with monoterpenes the most abundant species (24.7 kt), followed by other biogenic volatile organic compounds (e.g. alcohols, aldehydes and acetone) (16.3 kt), and isoprene (5.9 kt). These compounds signify 52%, 35% and 13%, respectively, of total emission estimates. Peak hourly total emission for a winter day could be less than 10% of the corresponding value for a summer day.

  19. Estimating the biogenic emissions of non-methane volatile organic compounds from the North Western Mediterranean vegetation of Catalonia, Spain

    International Nuclear Information System (INIS)

    Parra, R.; Gasso, S.; Baldasano, J.M.

    2004-01-01

    An estimation of the magnitude of non-methane volatile organic compounds (NMVOCs) emitted by vegetation in Catalonia (NE of the Iberian Peninsula, Spain), in addition to their superficial and temporal distribution, is presented for policy and scientific (photochemical modelling) purposes. It was developed for the year 2000, for different time resolutions (hourly, daily, monthly and annual) and using a high-resolution land-use map (1-km 2 squared cells). Several meteorological surface stations provided air temperature and solar radiation data. An adjusted mathematical emission model taking account of Catalonia's conditions was built into a geographic information system (GIS) software. This estimation uses the latest information, mainly relating to: (1) emission factors; (2) better knowledge of the composition of Catalonia's forest cover; and (3) better knowledge of the particular emission behaviour of some Mediterranean vegetal species. Results depict an annual cycle with increasing values in the March-April period with the highest emissions in July-August, followed by a decrease in October-November. Annual biogenic NMVOCs emissions reach 46.9 kt, with monoterpenes the most abundant species (24.7 kt), followed by other biogenic volatile organic compounds (e.g. alcohols, aldehydes and acetone) (16.3 kt), and isoprene (5.9 kt). These compounds signify 52%, 35% and 13%, respectively, of total emission estimates. Peak hourly total emission for a winter day could be less than 10% of the corresponding value for a summer day

  20. Fingerprinting of petroleum hydrocarbons (PHC) and other biogenic organic compounds (BOC) in oil-contaminated and background soil samples.

    Science.gov (United States)

    Wang, Zhendi; Yang, C; Yang, Z; Hollebone, B; Brown, C E; Landriault, M; Sun, J; Mudge, S M; Kelly-Hooper, F; Dixon, D G

    2012-09-01

    Total petroleum hydrocarbons (TPH) or petroleum hydrocarbons (PHC) are one of the most widespread soil contaminants in Canada, the United States and many other countries worldwide. Clean-up of PHC-contaminated soils costs the Canadian economy hundreds of millions of dollars annually. In Canada, most PHC-contaminated site evaluations are based on the methods developed by the Canadian Council of the Ministers of the Environment (CCME). However, the CCME method does not differentiate PHC from BOC (the naturally occurring biogenic organic compounds), which are co-extracted with petroleum hydrocarbons in soil samples. Consequently, this could lead to overestimation of PHC levels in soil samples. In some cases, biogenic interferences can even exceed regulatory levels (300 μg g(-1) for coarse soils and 1300 μg g(-1) for fine soils for Fraction 3, C(16)-C(34) range, in the CCME Soil Quality Level). Resulting false exceedances can trigger unnecessary and costly cleanup or remediation measures. Therefore, it is critically important to develop new protocols to characterize and quantitatively differentiate PHC and BOC in contaminated soils. The ultimate objective of this PERD (Program of Energy Research and Development) project is to correct the misconception that all detectable hydrocarbons should be regulated as toxic petroleum hydrocarbons. During 2009-2010, soil and plant samples were collected from over forty oil-contaminated and paired background sites in various provinces. The silica gel column cleanup procedure was applied to effectively remove all target BOC from the oil-contaminated sample extracts. Furthermore, a reliable GC-MS method in combination with the derivatization technique, developed in this laboratory, was used for identification and characterization of various biogenic sterols and other major biogenic compounds in these oil-contaminated samples. Both PHC and BOC in these samples were quantitatively determined. This paper reports the characterization

  1. Comparative study of automotive, aircraft and biogenic emissions of aldehydes and aromatic compounds.

    Science.gov (United States)

    Guimarães, C S; Custodio, D; de Oliveira, R C S; Varandas, L S; Arbilla, G

    2010-02-01

    Air samples were collected in three well characterized locations in the city of Rio de Janeiro, Brazil: downtown, the idle and taxi way areas of the national airport and an urban forest, where the main emissions are from vehicular, aircraft and biogenic sources, respectively. Aldehydes and BTEX concentrations show a characteristic profile which may be attributed to the emission sources. Formaldehyde/acetaldehyde ratios, in the early morning, were 1.39, 0.62 and 2.22 in downtown, airport and forest, respectively. Toluene/benzene ratios, for downtown, airport and forest areas, were 1.11, 1.82 and 1.06, respectively. The results show that the impact of the urban emissions on the forest is negligible as well as the impact of aircraft emissions over the urban area.

  2. Climate change-induced vegetation change as a driver of increased subarctic biogenic volatile organic compound emissions

    DEFF Research Database (Denmark)

    Valolahti, Hanna Maritta; Kivimäenpää, Minna; Faubert, Patrick

    2015-01-01

    Emissions of biogenic volatile organic compounds (BVOCs) have been earlier shown to be highly temperature sensi-tive in subarctic ecosystems. As these ecosystems experience rapidly advancing pronounced climate warming, weaimed to investigate how warming affects the BVOC emissions in the long term...... (up to 13 treatment years). We alsoaimed to assess whether the increased litterfall resulting from the vegetation changes in the warming subarctic wouldaffect the emissions. The study was conducted in a field experiment with factorial open-top chamber warming andannual litter addition treatments......-trometry. Plant species coverage in the plots was analyzed by the point intercept method. Warming by 2 °C caused a2-fold increase in monoterpene and 5-fold increase in sesquiterpene emissions, averaged over all measurements.When the momentary effect of temperature was diminished by standardization of emissions...

  3. Non-methane biogenic volatile organic compound emissions from boreal peatland microcosms under warming and water table drawdown

    DEFF Research Database (Denmark)

    Faubert, P; Tiiva, P; Nakam, TA

    2011-01-01

    Abstract Boreal peatlands have significant emissions of non-methane biogenic volatile organic compounds (BVOCs). Climate warming is expected to affect these ecosystems both directly, with increasing temperature, and indirectly, through water table drawdown following increased evapotranspiration. We...... assessed the combined effect of warming and water table drawdown on the BVOC emissions from boreal peatland microcosms. We also assessed the treatment effects on the BVOC emissions from the peat soil after the 7-week long experiment. Emissions of isoprene, monoterpenes, sesquiterpenes, other reactive VOCs...... and other VOCs were sampled using a conventional chamber technique, collected on adsorbent and analyzed by GC–MS. Carbon emitted as BVOCs was less than 1% of the CO2 uptake and up to 3% of CH4 emission. Water table drawdown surpassed the direct warming effect and significantly decreased the emissions of all...

  4. Numerical model to quantify biogenic volatile organic compound emissions: The Pearl River Delta region as a case study.

    Science.gov (United States)

    Wang, Xuemei; Situ, Shuping; Chen, Weihua; Zheng, Junyu; Guenther, Alex; Fan, Qi; Chang, Ming

    2016-08-01

    This article compiles the actual knowledge of the biogenic volatile organic compound (BVOC) emissions estimated using model methods in the Pearl River Delta (PRD) region, one of the most developed regions in China. The developed history of BVOC emission models is presented briefly and three typical emission models are introduced and compared. The results from local studies related to BVOC emissions have been summarized. Based on this analysis, it is recommended that local researchers conduct BVOC emission studies systematically, from the assessment of model inputs, to compiling regional emission inventories to quantifying the uncertainties and evaluating the model results. Beyond that, more basic researches should be conducted in the future to close the gaps in knowledge on BVOC emission mechanisms, to develop the emission models and to refine the inventory results. This paper can provide a perspective on these aspects in the broad field of research associated with BVOC emissions in the PRD region. Copyright © 2016. Published by Elsevier B.V.

  5. Electrolyte solutions including a phosphoranimine compound, and energy storage devices including same

    Science.gov (United States)

    Klaehn, John R.; Dufek, Eric J.; Rollins, Harry W.; Harrup, Mason K.; Gering, Kevin L.

    2017-09-12

    An electrolyte solution comprising at least one phosphoranimine compound and a metal salt. The at least one phosphoranimine compound comprises a compound of the chemical structure ##STR00001## where X is an organosilyl group or a tert-butyl group and each of R.sup.1, R.sup.2, and R.sup.3 is independently selected from the group consisting of an alkyl group, an aryl group, an alkoxy group, or an aryloxy group. An energy storage device including the electrolyte solution is also disclosed.

  6. Assessing the sensitivity of benzene cluster cation chemical ionization mass spectrometry toward a wide array of biogenic volatile organic compounds

    Science.gov (United States)

    Lavi, Avi; Vermeuel, Michael; Novak, Gordon; Bertram, Timothy

    2017-04-01

    Chemical ionization mass spectrometry is a real-time, sensitive and selective measurement technique for the detection of volatile organic compounds (VOCs). The benefits of CIMS technology make it highly suitable for field measurements that requires fast (10Hz and higher) response rates, such as the study of surface-atmosphere exchange processes by the eddy covariance method. The use of benzene cluster cations as a regent ion was previously demonstrated as a sensitive and selective method for the detection of select biogenic VOCs (e.g. isoprene, monoterpenes and sesquiterpenes) [Kim et al., 2016; Leibrock and Huey, 2000]. Quantitative analysis of atmospheric trace gases necessitates calibration for each analyte as a function of atmospheric conditions. We describe a custom designed calibration system, based on liquid evaporation, for determination of the sensitivity of the benzene-CIMS to a wide range of organic compounds at atmospherically relevant mixing ratios (reactions and the role of water vapor and oxygen, we compare our measured sensitivities with a computational analysis of the charge distribution between the analyte, reagent ion and water molecules in the gas phase. These parameters provide insight on the ionization mechanism and provide parameters for quantification of organic molecules measured during field campaigns. References Kim, M. J., M. C. Zoerb, N. R. Campbell, K. J. Zimmermann, B. W. Blomquist, B. J. Huebert, and T. H. Bertram (2016), Revisiting benzene cluster cations for the chemical ionization of dimethyl sulfide and select volatile organic compounds, Atmos Meas Tech, 9(4), 1473-1484, doi:10.5194/amt-9-1473-2016. Leibrock, E., and L. G. Huey (2000), Ion chemistry for the detection of isoprene and other volatile organic compounds in ambient air, Geophys Res Lett, 27(12), 1719-1722, doi:Doi 10.1029/1999gl010804.

  7. Biogenic volatile organic compound emissions from senescent maize leaves and a comparison with other leaf developmental stages

    Science.gov (United States)

    Mozaffar, A.; Schoon, N.; Bachy, A.; Digrado, A.; Heinesch, B.; Aubinet, M.; Fauconnier, M.-L.; Delaplace, P.; du Jardin, P.; Amelynck, C.

    2018-03-01

    Plants are the major source of Biogenic Volatile Organic Compounds (BVOCs) which have a large influence on atmospheric chemistry and the climate system. Therefore, understanding of BVOC emissions from all abundant plant species at all developmental stages is very important. Nevertheless, investigations on BVOC emissions from even the most widespread agricultural crop species are rare and mainly confined to the healthy green leaves. Senescent leaves of grain crop species could be an important source of BVOCs as almost all the leaves senesce on the field before being harvested. For these reasons, BVOC emission measurements have been performed on maize (Zea mays L.), one of the most cultivated crop species in the world, at all the leaf developmental stages. The measurements were performed in controlled environmental conditions using dynamic enclosures and proton transfer reaction mass spectrometry (PTR-MS). The main compounds emitted by senescent maize leaves were methanol (31% of the total cumulative BVOC emission on a mass of compound basis) and acetic acid (30%), followed by acetaldehyde (11%), hexenals (9%) and m/z 59 compounds (acetone/propanal) (7%). Important differences were observed in the temporal emission profiles of the compounds, and both yellow leaves during chlorosis and dry brown leaves after chlorosis were identified as important senescence-related BVOC sources. Total cumulative BVOC emissions from senescent maize leaves were found to be among the highest for senescent Poaceae plant species. BVOC emission rates varied strongly among the different leaf developmental stages, and senescent leaves showed a larger diversity of emitted compounds than leaves at earlier stages. Methanol was the compound with the highest emissions for all the leaf developmental stages and the contribution from the young-growing, mature, and senescent stages to the total methanol emission by a typical maize leaf was 61, 13, and 26%, respectively. This study shows that BVOC

  8. Air quality and health effects of biogenic volatile organic compounds emissions from urban green spaces and the mitigation strategies.

    Science.gov (United States)

    Ren, Yuan; Qu, Zelong; Du, Yuanyuan; Xu, Ronghua; Ma, Danping; Yang, Guofu; Shi, Yan; Fan, Xing; Tani, Akira; Guo, Peipei; Ge, Ying; Chang, Jie

    2017-11-01

    Biogenic volatile organic compounds (BVOCs) emissions lead to fine particulate matter (PM 2.5 ) and ground-level ozone pollution, and are harmful to human health, especially in urban areas. However, most BVOCs estimations ignored the emissions from urban green spaces, causing inaccuracies in the understanding of regional BVOCs emissions and their environmental and health effects. In this study, we used the latest local vegetation datasets from our field survey and applied an estimation model to analyze the spatial-temporal patterns, air quality impacts, health damage and mitigating strategies of BVOCs emissions in the Greater Beijing Area. Results showed that: (1) the urban core was the hotspot of regional BVOCs emissions for the highest region-based emission intensity (3.0 g C m -2 yr -1 ) among the 11 sub-regions; (2) urban green spaces played much more important roles (account for 62% of total health damage) than rural forests in threating human health; (3) BVOCs emissions from green spaces will more than triple by 2050 due to urban area expansion, tree growth and environmental changes; and (4) adopting proactive management (e.g. adjusting tree species composition) can reduce 61% of the BVOCs emissions and 50% of the health damage related to BVOCs emissions by 2050. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. Effect of land-use change and management on biogenic volatile organic compound emissions--selecting climate-smart cultivars.

    Science.gov (United States)

    Rosenkranz, Maaria; Pugh, Thomas A M; Schnitzler, Jörg-Peter; Arneth, Almut

    2015-09-01

    Land-use change (LUC) has fundamentally altered the form and function of the terrestrial biosphere. Increasing human population, the drive for higher living standards and the potential challenges of mitigating and adapting to global environmental change mean that further changes in LUC are unavoidable. LUC has direct consequences on climate not only via emissions of greenhouse gases and changing the surface energy balance but also by affecting the emission of biogenic volatile organic compounds (BVOCs). Isoprenoids, which dominate global BVOC emissions, are highly reactive and strongly modify atmospheric composition. The effects of LUC on BVOC emissions and related atmospheric chemistry have been largely ignored so far. However, compared with natural ecosystems, most tree species used in bioenergy plantations are strong BVOC emitters, whereas intensively cultivated crops typically emit less BVOCs. Here, we summarize the current knowledge on LUC-driven BVOC emissions and how these might affect atmospheric composition and climate. We further discuss land management and plant-breeding strategies, which could be taken to move towards climate-friendly BVOC emissions while simultaneously maintaining or improving key ecosystem functions such as crop yield under a changing environment. © 2014 John Wiley & Sons Ltd.

  10. Approaches for quantifying reactive and low-volatility biogenic organic compound emissions by vegetation enclosure techniques - part A.

    Science.gov (United States)

    Ortega, John; Helmig, Detlev

    2008-06-01

    The high reactivity and low vapor pressure of many biogenic volatile organic compounds (BVOC) make it difficult to measure whole-canopy fluxes of BVOC species using common analytical techniques. The most appropriate approach for estimating these BVOC fluxes is to determine emission rates from dynamic vegetation enclosure measurements. After scaling leaf- and branch-level emission rates to the canopy level, these fluxes can then be used in models to determine BVOC influences on atmospheric chemistry and aerosol processes. Previously published reports from enclosure measurements show considerable variation among procedures with limited guidelines or standard protocols to follow. This article reviews this literature and describes the variety of enclosure types, materials, and analysis techniques that have been used to determine BVOC emission rates. The current review article is followed by a companion paper which details a comprehensive enclosure technique that incorporates both recommendations from the literature as well as insight gained from theoretical calculations and practical experiences. These methods have yielded new BVOC emission data for highly reactive monoterpenes (MT) and sesquiterpenes (SQT) from a variety of vegetation species.

  11. Role of management strategies and environmental factors in determining the emissions of biogenic volatile organic compounds from urban greenspaces.

    Science.gov (United States)

    Ren, Yuan; Ge, Ying; Gu, Baojing; Min, Yong; Tani, Akira; Chang, Jie

    2014-06-03

    Biogenic volatile organic compound (BVOC) emissions from urban greenspace have recently become a global concern. To identify key factors affecting the dynamics of urban BVOC emissions, we built an estimation model and utilized the city of Hangzhou in southeastern China as an example. A series of single-factor scenarios were first developed, and then nine multifactor scenarios using a combination of different single-factor scenarios were built to quantify the effects of environmental changes and urban management strategies on urban BVOC emissions. Results of our model simulations showed that (1) annual total BVOC emissions from the metropolitan area of Hangzhou were 4.7×10(8) g of C in 2010 and were predicted to be 1.2-3.2 Gg of C (1 Gg=10(9) g) in our various scenarios in 2050, (2) urban management played a more important role in determining future urban BVOC emissions than environmental changes, and (3) a high ecosystem service value (e.g., lowest BVOC/leaf mass ratio) could be achieved through positive coping in confronting environmental changes and adopting proactive urban management strategies on a local scale, that is, to moderately increase tree density while restricting excessive greenspace expansion and optimizing the species composition of existing and newly planted trees.

  12. Biogenic Trypanocidal Sesquiterpenes: Lead Compounds to Design Future Trypanocidal Drugs - A Mini Review

    Directory of Open Access Journals (Sweden)

    Soodabeh Saeidnia

    2013-05-01

    Full Text Available Human trypanosomiasis is a parasitic disease among poor people in Africa and Latin America. Therapy against African and American trypanosomiasis is based on a few drugs that often cause severe side-effects. Therefore, it is essential to develop drug discovery especially from natural origins. Sesquiterpenes, a diverse group of natural terpenoids, are found in essential oils of many plants and show a broad range of bioactivities. They act through multiple mechanisms in the chemotherapy of trypanosomiasis. Some of these active compounds contain hydroperoxides, aldehydes, alcohols, α,β-unsaturated γ-lactone and even halogenated moieties. Among the compounds reported, sesquiterpene lactones showed a potent anti-trypanosoma effect comparable with commercial trypanocidal drugs. Trypanocidal activity of sesquiterpene lactones mostly depends on the reaction between γ-lactone moieties and nucleophile groups of trypanithione, which is essential for Trypanosoma defense against the oxidative stresses. Elatol is a sesquiterpenoid from marine algae, with a different structure and considerable trypanocidal activity which could be an interesting candidate for further antiprotozoal investigations. To develop novel drugs with higher efficacy and lower toxicity from natural products, this review summarizes the more recent information on trypanocidal activities of various sesquiterpenes

  13. Responses of non-methane biogenic volatile organic compound emissions to climate change in boreal and subarctic ecosystems

    Energy Technology Data Exchange (ETDEWEB)

    Faubert, P.

    2010-07-01

    Non-methane biogenic volatile organic compound emissions (BVOCs) have important roles in the global atmospheric chemistry but their feedbacks to climate change are still unknown. This thesis reports one of the first estimates of BVOC emissions from boreal and subarctic ecosystems. Most importantly, this thesis assesses the BVOC emission responses to four effects of climate change in these ecosystems: (1) the direct effect of warming, and its indirect effects via (2) water table drawdown, (3) change in the vegetation composition, and (4) enhanced UV-B radiation. BVOC emissions were measured using a conventional chamber method in which the compounds were collected on adsorbent and later analyzed by gas chromatography-mass spectrometry. On a subarctic heath, warming by only 1.9-2.5 degC doubled the monoterpene and sesquiterpene emissions. Such a high increase of BVOC emissions under a conservative warming cannot be predicted by the current models, which underlines the importance of a focus on BVOC emissions from the Subarctic under climate change. On a subarctic peatland, enhanced UV-B did not affect the BVOC emissions but the water table level exerted the major effect. The water table drawdown experimentally applied on boreal peatland microcosms decreased the emissions of monoterpenes and other VOCs (BVOCs with a lifetime>1 d) for the hollows (wet microsites) and that of all BVOC groups for the lawns (moderately wet microsites). The warming treatment applied on the lawn microcosms decreased the isoprene emission. The removal of vascular plants in the hummock (dry microsites) microcosms decreased the emissions of monoterpenes while the emissions between the microcosms covered with Sphagnum moss and bare peat were not different. In conclusion, the results presented in this thesis indicate that climate change has complex effects on the BVOC emissions. These results make a significant contribution to improving the modeling of BVOC emissions for a better understanding of

  14. The Tree Drought Emission MONitor (Tree DEMON, an innovative system for assessing biogenic volatile organic compounds emission from plants

    Directory of Open Access Journals (Sweden)

    Marvin Lüpke

    2017-03-01

    Full Text Available Abstract Background Biogenic volatile organic compounds (BVOC emitted by plants play an important role for ecological and physiological processes, for example as response to stressors. These emitted compounds are involved in chemical processes within the atmosphere and contribute to the formation of aerosols and ozone. Direct measurement of BVOC emissions requires a specialized sample system in order to obtain repeatable and comparable results. These systems need to be constructed carefully since BVOC measurements may be disturbed by several side effects, e.g., due to wrong material selection and lacking system stability. Results In order to assess BVOC emission rates, a four plant chamber system was constructed, implemented and throughout evaluated by synthetic tests and in two case studies on 3-year-old sweet chestnut seedlings. Synthetic system test showed a stable sampling with good repeatability and low memory effects. The first case study demonstrated the capability of the system to screen multiple trees within a few days and revealed three different emission patterns of sweet chestnut trees. The second case study comprised an application of drought stress on two seedlings compared to two in parallel assessed seedlings of a control. Here, a clear reduction of BVOC emissions during drought stress was observed. Conclusion The developed system allows assessing BVOC as well as CO2 and water vapor gas exchange of four tree specimens automatically and in parallel with repeatable results. A canopy volume of 30 l can be investigated, which constitutes in case of tree seedlings the whole canopy. Longer lasting experiments of e.g., 1–3 weeks can be performed easily without any significant plant interference.

  15. Biogenic platinum and palladium nanoparticles as new catalysts for the removal of pharmaceutical compounds.

    Science.gov (United States)

    Martins, Mónica; Mourato, Cláudia; Sanches, Sandra; Noronha, João Paulo; Crespo, M T Barreto; Pereira, Inês A C

    2017-01-01

    Pharmaceutical products (PhP) are one of the most alarming emergent pollutants in the environment. Therefore, it is of extreme importance to investigate efficient PhP removal processes. Biologic synthesis of platinum nanoparticles (Bio-Pt) has been reported, but their catalytic activity was never investigated. In this work, we explored the potential of cell-supported platinum (Bio-Pt) and palladium (Bio-Pd) nanoparticles synthesized with Desulfovibrio vulgaris as biocatalysts for removal of four PhP: ciprofloxacin, sulfamethoxazole, ibuprofen and 17β-estradiol. The catalytic activity of the biological nanoparticles was compared with the PhP removal efficiency of D. vulgaris whole-cells. In contrast with Bio-Pd, Bio-Pt has a high catalytic activity in PhP removal, with 94, 85 and 70% removal of 17β-estradiol, sulfamethoxazole and ciprofloxacin, respectively. In addition, the estrogenic activity of 17β-estradiol was strongly reduced after the reaction with Bio-Pt, showing that this biocatalyst produces less toxic effluents. Bio-Pt or Bio-Pd did not act on ibuprofen, but this could be completely removed by D. vulgaris whole-cells, demonstrating that sulfate-reducing bacteria are among the microorganisms capable of biotransformation of ibuprofen in anaerobic environments. This study demonstrates for the first time that Bio-Pt has a high catalytic activity, and is a promising catalyst to be used in water treatment processes for the removal of antibiotics and endocrine disrupting compounds, the most problematic PhP. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Biogenic volatile organic compound analyses by PTR-TOF-MS: Calibration, humidity effect and reduced electric field dependency.

    Science.gov (United States)

    Pang, Xiaobing

    2015-06-01

    Green leaf volatiles (GLVs) emitted by plants after stress or damage induction are a major part of biogenic volatile organic compounds (BVOCs). Proton transfer reaction time-of-flight mass spectrometry (PTR-TOF-MS) is a high-resolution and sensitive technique for in situ GLV analyses, while its performance is dramatically influenced by humidity, electric field, etc. In this study the influence of gas humidity and the effect of reduced field (E/N) were examined in addition to measuring calibration curves for the GLVs. Calibration curves measured for seven of the GLVs in dry air were linear, with sensitivities ranging from 5 to 10 ncps/ppbv (normalized counts per second/parts per billion by volume). The sensitivities for most GLV analyses were found to increase by between 20% and 35% when the humidity of the sample gas was raised from 0% to 70% relative humidity (RH) at 21°C, with the exception of (E)-2-hexenol. Product ion branching ratios were also affected by humidity, with the relative abundance of the protonated molecular ions and higher mass fragment ions increasing with humidity. The effect of reduced field (E/N) on the fragmentation of GLVs was examined in the drift tube of the PTR-TOF-MS. The structurally similar GLVs are acutely susceptible to fragmentation following ionization and the fragmentation patterns are highly dependent on E/N. Overall the measured fragmentation patterns contain sufficient information to permit at least partial separation and identification of the isomeric GLVs by looking at differences in their fragmentation patterns at high and low E/N. Copyright © 2015. Published by Elsevier B.V.

  17. Ozone reactivity of biogenic volatile organic compound (BVOC) emissions during the Southeast Oxidant and Aerosol Study (SOAS)

    Science.gov (United States)

    Park, J.; Guenther, A. B.; Helmig, D.

    2013-12-01

    Recent studies on atmospheric chemistry in the forest environment showed that the total reactivity by biogenic volatile organic compound (BVOC) emission is still not well understood. During summer 2013, an intensive field campaign (Southeast Oxidant and Aerosol Study - SOAS) took place in Alabama, U.S.A. In this study, an ozone reactivity measurement system (ORMS) was deployed for the direct determination of the reactivity of foliage emissions. The ORMS is a newly developed measurement approach, in which a known amount of ozone is added to the ozone-free air sample stream, with the ORMS measuring ozone concentration difference between before and after a glass flask flow tube reaction vessel (2-3 minutes of residence time). Emissions were also collected onto adsorbent cartridges to investigate the discrepancy between total ozone reactivity observation and reactivity calculated from identified BVOC. Leaf and canopy level experiments were conducted by deploying branch enclosures on the three dominant tree species at the site (i.e. liquidambar, white oak, loblolly pine) and by sampling ambient air above the forest canopy. For the branch enclosure experiments, BVOC emissions were sampled from a 70 L Teflon bag enclosure, purged with air scrubbed for ozone, nitrogen oxides. Each branch experiment was performed for 3-5 days to collect at least two full diurnal cycle data. In addition, BVOCs were sampled using glass tube cartridges for 2 hours during daytime and 3 - 4 hours at night. During the last week of campaign, the inlet for the ORMS was installed on the top of scaffolding tower (~30m height). The ozone loss in the reactor showed distinct diurnal cycle for all three tree species investigated, and ozone reactivity followed patterns of temperature and light intensity.

  18. Climate change-induced vegetation change as a driver of increased subarctic biogenic volatile organic compound emissions.

    Science.gov (United States)

    Valolahti, Hanna; Kivimäenpää, Minna; Faubert, Patrick; Michelsen, Anders; Rinnan, Riikka

    2015-09-01

    Emissions of biogenic volatile organic compounds (BVOCs) have been earlier shown to be highly temperature sensitive in subarctic ecosystems. As these ecosystems experience rapidly advancing pronounced climate warming, we aimed to investigate how warming affects the BVOC emissions in the long term (up to 13 treatment years). We also aimed to assess whether the increased litterfall resulting from the vegetation changes in the warming subarctic would affect the emissions. The study was conducted in a field experiment with factorial open-top chamber warming and annual litter addition treatments on subarctic heath in Abisko, northern Sweden. After 11 and 13 treatment years, BVOCs were sampled from plant communities in the experimental plots using a push-pull enclosure technique and collection into adsorbent cartridges during the growing season and analyzed with gas chromatography-mass spectrometry. Plant species coverage in the plots was analyzed by the point intercept method. Warming by 2 °C caused a 2-fold increase in monoterpene and 5-fold increase in sesquiterpene emissions, averaged over all measurements. When the momentary effect of temperature was diminished by standardization of emissions to a fixed temperature, warming still had a significant effect suggesting that emissions were also indirectly increased. This indirect increase appeared to result from increased plant coverage and changes in vegetation composition. The litter addition treatment also caused significant increases in the emission rates of some BVOC groups, especially when combined with warming. The combined treatment had both the largest vegetation changes and the highest BVOC emissions. The increased emissions under litter addition were probably a result of a changed vegetation composition due to alleviated nutrient limitation and stimulated microbial production of BVOCs. We suggest that the changes in the subarctic vegetation composition induced by climate warming will be the major factor

  19. A source-orientated approach for estimating daytime concentrations of biogenic volatile organic compounds in an upper layer of a boreal forest canopy

    Energy Technology Data Exchange (ETDEWEB)

    Lappalainen, H.K. [Finnish Meteorological Inst., Helsinki (Finland); Sevanto, S.; Dal Maso, M.; Taipale, R.; Kajos, M. [Helsinki Univ. (Finland). Dept. of Physics; Kolari, P.; Back, J. [Helsinki Univ. (Finland). Dept. of Forest Ecology Sciences

    2013-06-01

    Biologically justified statistical models for daytime atmospheric concentrations of methanol, acetaldehyde, acetone, isoprene and monoterpene were tested using measurements at a boreal forest stand in southern Finland in 2006-2007 and in summer 2008. The canopy-scale concentrations of all compounds except monotepene were closely correlated with shoot-scale concentrations indicating a strong link to biological emission source. All the models were based on the exponential relationship between air temperature and atmospheric concentration of biogenic volatile organic compounds (BVOCs). The first model - an exponential function of air temperature (T model) - could explain 27%-64% of the variation in BVOC daytime concentrations in the test data. The second model - a Temperature-State of Development model (T-S model) having two explaining variables (air temperature and seasonal photosynthetic efficiency) - was derived from an empirical adjustment of seasonality. This model slightly increased the fraction of explained variation but it still could not explain the high concentration peaks, which accounted for most of the unexplained variation. To better analyse these peaks we tested the Trigger model including two potential environmental triggers, a PAR index (high photosynthetically active photon flux density (PAR) and high ozone concentration, that could increase the concentrations momentarily. However, the Trigger model described the peak concentrations only somewhat better than the T or T-S model. It seems that it is very difficult to explain more than 32%-67% of variation in BVOC concentrations by a straightforward source-oriented modelling without deep understanding of biological and physical processes. In order to improve the models profound studies on specific stress factors and events inducing BVOC emissions are needed. (orig.)

  20. A comprehensive emission inventory of biogenic volatile organic compounds in Europe: improved seasonality and land-cover

    Directory of Open Access Journals (Sweden)

    D. C. Oderbolz

    2013-02-01

    Full Text Available Biogenic volatile organic compounds (BVOC emitted from vegetation are important for the formation of secondary pollutants such as ozone and secondary organic aerosols (SOA in the atmosphere. Therefore, BVOC emission are an important input for air quality models. To model these emissions with high spatial resolution, the accuracy of the underlying vegetation inventory is crucial. We present a BVOC emission model that accommodates different vegetation inventories and uses satellite-based measurements of greenness instead of pre-defined vegetation periods. This approach to seasonality implicitly treats effects caused by water or nutrient availability, altitude and latitude on a plant stand. Additionally, we test the influence of proposed seasonal variability in enzyme activity on BVOC emissions. In its present setup, the emission model calculates hourly emissions of isoprene, monoterpenes, sesquiterpenes and the oxygenated volatile organic compounds (OVOC methanol, formaldehyde, formic acid, ethanol, acetaldehyde, acetone and acetic acid. In this study, emissions based on three different vegetation inventories are compared with each other and diurnal and seasonal variations in Europe are investigated for the year 2006. Two of these vegetation inventories require information on tree-cover as an input. We compare three different land-cover inventories (USGS GLCC, GLC2000 and Globcover 2.2 with respect to tree-cover. The often-used USGS GLCC land-cover inventory leads to a severe reduction of BVOC emissions due to a potential miss-attribution of broad-leaved trees and reduced tree-cover compared to the two other land-cover inventories. To account for uncertainties in the land-cover classification, we introduce land-cover correction factors for each relevant land-use category to adjust the tree-cover. The results are very sensitive to these factors within the plausible range. For June 2006, total monthly BVOC emissions decreased up to −27% with

  1. Regional climatic effects according to different estimations of biogenic volatile organic compounds during the asian summer monsoon

    Science.gov (United States)

    Kim, Hyung-Jin; Takata, Kumiko; Tanaka, Katsunori; Yamashima, Ryoji; Matsumoto, Jun; Saito, Kazuyuki; Takemura, Toshihiko; Yasunari, Tetsuzo

    2014-08-01

    A series of 60-year numerical experiments starting from 1851 was conducted using a global climate model coupled with an aerosol-cloud-radiation model to investigate the response of the Asian summer monsoon to variations in the secondary organic aerosol (SOA) flux induced by two different estimations of biogenic volatile organic compound (BVOC) emissions. One estimation was obtained from a pre-existing archive and the other was generated by a next-generation model (the Model of Emissions of Gases and Aerosols from Nature, MEGAN). The use of MEGAN resulted in an overall increase of the SOA production through a higher rate of gasto-particle conversion of BVOCs. Consequently, the atmospheric loading of organic carbon (OC) increased due to the contribution of SOA to OC aerosol. The increase of atmospheric OC aerosols was prominent in particular in the Indian subcontinent and Indochina Peninsula (IP) during the pre- and early-monsoon periods because the terrestrial biosphere is the major source of BVOC emissions and the atmospheric aerosol concentration diminishes rapidly with the arrival of monsoon rainfall. As the number of atmospheric OC particles increased, the number concentrations of cloud droplets increased, but their size decreased. These changes represent a combination of aerosol-cloud interactions that were favorable to rainfall suppression. However, the modeled precipitation was slightly enhanced in May over the oceans that surround the Indian subcontinent and IP. Further analysis revealed that a compensating updraft in the surrounding oceans was induced by the thermally-driven downdraft in the IP, which was a result of surface cooling associated with direct OC aerosol radiative forcing, and was able to surpass the aerosolcloud interactions. The co-existence of oceanic ascending motion with the maximum convective available potential energy was also found to be crucial for rainfall formation. Although the model produced statistically significant rainfall

  2. Climatic effects of biogenic volatile organic compounds (BVOCs) emissions and associated feedbacks due to vegetation change in the boreal zone

    Science.gov (United States)

    Blichner, Sara Marie; Koren Berntsen, Terje; Stordal, Frode

    2017-04-01

    As our understanding of the earth system improves, it is becoming increasingly clear that vegetation and ecosystems are not only influenced by the atmosphere, but that changes in these also feed back to the atmosphere and induce changes here. One such feedback involves the emission of biogenic volatile organic compounds (BVOCs) emitted from vegetation. As BVOCs are oxidized, they become less volatile and contribute to aerosol growth and formation in the atmosphere, and can thus change the radiative balance of the atmosphere through both the direct and indirect aerosol effects. The amount and type of BVOCs emitted by vegetation depends on a myriad of variables; temperature, leaf area index (LAI), species, water availability and various types of stress (e.g. insects attacks). They generally increase with higher temperatures and under stress. These factors beg the question of how emissions will change in the future in response to both temperature increase and changes to vegetation patterns and densities. The boreal region is of particular interest because forest cover in general has been thought to have a warming effect due to trees reducing the albedo, especially when snow covers the ground. We investigate feedbacks through BVOC emissions related to the expected northward expansion of boreal forests in response to global warming with a development version of the Norwegian Earth System Model (NorESM). BVOC emissions are computed by the Model of Emissions of Gases and Aerosols from Nature 2.1 (MEGAN2.1) which is incorporated into the Community Land Model v4.5 (CLM4.5). The atmospheric component is CAM5.3-Oslo. We will present preliminary results of effects on clouds and aerosol concentrations resulting from a fixed poleward shift in boreal forests and compare the radiative effects of this to changes in surface energy fluxes. CO2-concentrations and sea surface temperatures are kept fixed in order to isolate the effects of the change in vegetation patterns. Finally

  3. Biogenic Emission Inventory System (BEIS)

    Science.gov (United States)

    Biogenic Emission Inventory System (BEIS) estimates volatile organic compound (VOC) emissions from vegetation and nitric oxide (NO) emission from soils. Recent BEIS development has been restricted to the SMOKE system

  4. A chromatographic method to analyze products from photo-oxidation of anthropogenic and biogenic mixtures of volatile organic compounds in smog chambers.

    Science.gov (United States)

    Pindado Jiménez, Oscar; Pérez Pastor, Rosa M; Vivanco, Marta G; Santiago Aladro, Manuel

    2013-03-15

    A method for quantifying secondary organic aerosol compounds (SOA) and water soluble secondary organic aerosol compounds (WSOA) produced from photo-oxidation of complex mixtures of volatile organic compounds (VOCs) in smog chambers by gas chromatography/mass spectrometry (GC/MS) has been developed. This method employs a double extraction with water and methanol jointly to a double derivatization with N,O-bis (trimethylsilil) trifluoroacetamide (BSTFA) and O-(2,3,4,5,6)-pentafluorobenzyl-hydroxylamine hydrochloride (PFBHA) followed by an analysis performed by GC/MS. The analytical procedure complements other methodologies because it can analyze SOA and WSOA compounds simultaneously at trace levels. As application, the methodology was employed to quantify the organic composition of aerosols formed in a smog chamber as a result of photo-oxidation of two different mixtures of volatile organic compounds: an anthropogenic mixture and a biogenic mixture. The analytical method allowed us to quantify up to 17 SOA compounds at levels higher than 20 ng m(-3) with reasonable recovery and a precision below 11%. Values found for applicability, selectivity, linearity, precision, recovery, detection limit, quantification limit and sensitivity demonstrated that the methodology can be satisfactorily applied to quantify SOA and WSOA. Copyright © 2012 Elsevier B.V. All rights reserved.

  5. Biogenic amines in Portuguese traditional foods and wines.

    Science.gov (United States)

    Ferreira, Isabel M P L V O; Pinho, Olívia

    2006-09-01

    The presence of biogenic amines in foodstuffs is an important food safety problem because of the implication of these compounds in food intolerance and intoxication. The separation and quantification of biogenic amines in foods is normally performed by chromatographic techniques. This review contains descriptions of the quantification of biogenic amines in Portuguese traditional fermented and/or ripened foods and wines, including Protected Denomination of Origin cheeses, dry-cured sausages, and Portuguese wines (including Port wines), using different analytical methods based on high-pressure liquid chromatography (UV or diode array and/or fluorometric detectors) and gas chromatography (with a mass spectrometry detector). The evolution of biogenic amines during fermentation, ripening, aging, or storage of those products was also evaluated. Biogenic amine concentrations ranged widely within individual food items, and storage, transport, and handling conditions can influence to some extent the biogenic amines present and their concentrations. Traditional foods are an important part of the Portuguese diet, and a high intake of harmful amounts of biogenic amines from traditional Portuguese fermented foods is possible. However, extensive research is needed to extend the current limited database.

  6. Fluxes of ozone and Biogenic Volatile Organic Compounds in a mixed Mediterranean forest over a transition period between summer and fall

    Science.gov (United States)

    Fares, S.; Schnitzhofer, R.; Hansel, A.; Petersson, F.; Matteucci, G.; Scarascia Mugnozza, G.; Jiang, X.; Guenther, A. B.; Loreto, F.

    2012-12-01

    Mediterranean plant ecosystems are exposed to abiotic stressors that may be exacerbated by climate change dynamics. Moreover, plants need now to cope with increasing anthropogenic pressures, often associated with expanding impacts of urbanization. Anthropogenic stressors include harmful gases (e.g. ozone,) that are transported from anthropogenic pollution sources to the vegetation. They may alter ecophysiology and compromise metabolism of Mediterranean plants. A disproportionate number of Mediterranean ecosystems, many dominated by forest trees, are being transformed into "urban or pre-urban forests". This is in particular the case for Castelporziano Estate, a 6,000 ha Mediterranean forest located just 25 km from Rome downtown at the coast of the Mediterranean Sea. In September 2011 an intensive field campaign was performed in Castelporziano to investigate ozone deposition and biogenic emissions of volatile organic compounds (BVOC) from a mixed Mediterranean forest, mainly composed by Quercus suber, Quercus ilex, Pinus pinea. Measurements were performed at canopy level with fast real-time instruments (a fast ozone analyzer and a Proton Transfer Reaction-Time of Flight Mass Spectrometer) that allowed eddy covariant flux measurements of ozone and BVOC. In the transitional period from a warm and dry summer to a wet and moderately cool fall we typically observed tropospheric ozone volume mixing ratios (VMR) of 60 ppb at around noon, with high deposition fluxes (up to -10 nmol m-2 s-1) into the forest canopy. Canopy models were used to to calculate that up to 90% of ozone uptake can be attributed to non-stomatal sinks, suggesting that chemical reactions between ozone and reactive BVOC may have played an important role. The concentrations of reactive isoprenoids (e.g. sesquiterpenes) were indeed observed to decrease during the central hours of the day, in coincidence with increased ozone concentrations. Concentrations and fluxes of isoprenoid

  7. Development of a supercritical fluid extraction-gas chromatography-mass spectrometry method for the identification of highly polar compounds in secondary organic aerosols formed from biogenic hydrocarbons in smog chamber experiments.

    Science.gov (United States)

    Chiappini, L; Perraudin, E; Durand-Jolibois, R; Doussin, J F

    2006-11-01

    A new one-step method for the analysis of highly polar components of secondary organic aerosols (SOA) has been developed. This method should lead to a better understanding of SOA formation and evolution since it enables the compounds responsible for SOA formation to be identified. Since it is based on supercritical fluid extraction coupled to gas chromatography-mass spectrometry, it minimizes the analysis time and significantly enhances sensitivity, which makes it suitable for trace-level compounds, which are constituents of SOA. One of the key features of this method is the in situ derivatisation step: an online silylation allowing the measurement of highly polar, polyfunctional compounds, which is a prerequisite for the elucidation of chemical mechanisms. This paper presents the development of this analytical method and highlights its ability to address this major atmospheric issue through the analysis of SOA formed from the ozonolysis of a biogenic hydrocarbon (sabinene). Ozonolysis of sabinene was performed in a 6 m3 Teflon chamber. The aerosol components were derivatised in situ. More than thirty products, such as sabinaketone, sabinic acid and other multifunctional compounds including dicarboxylic acids and oxoacids, were measured. Nine of them were identified and quantified. The sensitivity and the linearity (0.91compounds.

  8. Framework for Assessing Biogenic CO2 Emissions from Stationary Sources

    Science.gov (United States)

    This revision of the 2011 report, Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, evaluates biogenic CO2 emissions from stationary sources, including a detailed study of the scientific and technical issues associated with assessing biogenic carbon dioxide...

  9. Sol-gel-based SPME fiber as a reliable sampling technique for studying biogenic volatile organic compounds released from Clostridium tetani.

    Science.gov (United States)

    Ghader, Masoud; Shokoufi, Nader; Es-Haghi, Ali; Kargosha, Kazem

    2017-11-01

    A novel and efficient headspace solid-phase microextraction (HS-SPME) method, followed by gas chromatography mass spectrometry (GC-MS), was developed to study volatile organic compounds (VOCs) emerging from microorganisms. Two homemade SPME fibers, a semi-polar poly (dimethylsiloxane) (PDMS) fiber, and a polar polyethylene glycol (PEG) fiber, along with two commercial fibers (PDMS and PDMS/DVB) were used to collect VOCs emerging from Clostridium tetani which was cultured in different media. The adsorbed VOCs were desorbed and identified, in vitro, using GC-MS. The adsorption efficiency was improved by optimizing the time duration of adsorption and desorption. About 50 components were identified by the proposed method. The main detected compounds appeared to be sulfur containing compounds such as butanethioic acid S-methyl ester, dimethyl trisulfide, and dimethyl tetrasulfide. These volatile sulfur containing compounds are derived from amino acids containing the sulfur element, which probably coexist in the mentioned bacterium or are added to the culture media. The developed HS-SPME-GC-MS method allowed the determination of the chemical fingerprint of Clostridium tetani volatile constituents, and thus provides a new, simple, and reliable tool for studying the growth of microorganisms. Graphical abstract Investigation of biogenic VOCs released from Clostridium tetani using SPME-GC-MS.

  10. SOA Formation form the NO3 radicals Chemistry of Isoprene, Monoterpenes, Sesquiterpenes, Biogenic Oxygenated Compounds, and Aromatics

    Science.gov (United States)

    Kleindienst, T. E.; Jaoui, M.; Docherty, K.; Corse, E.; Offenberg, J. H.; Lewandowski, M.

    2011-12-01

    Volatile organic compounds (VOCs) are oxidized in the atmosphere primarily by hydroxyl radicals (OH) during daylight hours but also by nitrate radicals (NO3) during overnight, photochemically inactive periods. While reactions with OH have received considerable attention with regard to gas-phase reaction products and secondary organic aerosol (SOA) formation, less is known about the mechanisms and products resulting from nighttime NO3 reactions despite their potential for SOA formation. To date, there have been limited studies on the chemical characteristics of aerosol reaction products formed from VOCs oxidation with NO3, and few SOA reaction products have been identified. Nighttime reactions have nevertheless been incorporated into some air quality models despite the limited information available and substantial uncertainties which still exist. The National Exposure Research Laboratory of the U.S. Environmental Protection Agency recently undertook an integrated laboratory research effort to better understand the contribution of NO3 reactions to nighttime SOA formation. Isoprene, methacrolein, a-pinene, b-pinene, d-limonene, b-caryophyllene, farnesene, a-humulene, 2-methyl-3-buten-2-ol, toluene, m-xylene, and naphthalene were reacted with NO3 under a wide range of conditions in a series of separate photochemical reaction chamber experiments. These hydrocarbons are thought to contribute to ambient SOA formation. NO3 was formed through thermal decomposition of N2O5. The yield, physical characteristics, and composition of SOA formed in each experiment was analyzed by a suite of instruments including a scanning mobility particle sizer, a Sunset Labs semi continuous EC-OC monitor, a volatility differential mobility analyzer, a direct insertion probe-mass spectrometer, a high resolution time-of-flight aerosol mass spectrometer, and a gas-chromatography-mass spectrometer. To understand the relative contributions of nighttime versus daytime VOCs reactions, a similar

  11. Characterization of Halyomorpha halys (brown marmorated stink bug) biogenic volatile organic compound emissions and their role in secondary organic aerosol formation.

    Science.gov (United States)

    Solomon, Danielle; Dutcher, Dabrina; Raymond, Timothy

    2013-11-01

    The formation of aerosols is a key component in understanding cloud formation in the context of radiative forcings and global climate modeling. Biogenic volatile organic compounds (BVOCs) are a significant source of aerosols, yet there is still much to be learned about their structures, sources, and interactions. The aims of this project were to identify the BVOCs found in the defense chemicals of the brown marmorated stink bug Halymorpha halys and quantify them using gas chromatography-mass spectrometry (GC/MS) and test whether oxidation of these compounds by ozone-promoted aerosol and cloud seed formation. The bugs were tested under two conditions: agitation by asphyxiation and direct glandular exposure. Tridecane, 2(5H)-furanone 5-ethyl, and (E)-2-decenal were identified as the three most abundant compounds. H. halys were also tested in the agitated condition in a smog chamber. It was found that in the presence of 100-180 ppm ozone, secondary aerosols do form. A scanning mobility particle sizer (SMPS) and a cloud condensation nuclei counter (CCNC) were used to characterize the secondary aerosols that formed. This reaction resulted in 0.23 microg/ bug of particulate mass. It was also found that these secondary organic aerosol particles could act as cloud condensation nuclei. At a supersaturation of 1%, we found a kappa value of 0.09. Once regional populations of these stink bugs stablilize and the populations estimates can be made, the additional impacts of their contribution to regional air quality can be calculated.

  12. Comparison of two common adsorption materials for thermal desorption gas chromatography - mass spectrometry of biogenic volatile organic compounds.

    Science.gov (United States)

    Marcillo, Andrea; Jakimovska, Viktorija; Widdig, Anja; Birkemeyer, Claudia

    2017-09-08

    Volatile organic compounds (VOCs) are commonly collected from gaseous samples by adsorption to materials such as the porous polymer Tenax TA. Adsorbed compounds are subsequently released from these materials by thermal desorption (TD) and separated then by gas chromatography (GC) with flame ionization (FID) or mass spectrometry (MS) detection. Tenax TA is known to be particularly suitable for non-polar to semipolar volatiles, however, many volatiles from environmental and biological samples possess a rather polar character. Therefore, we tested if the polymer XAD-2, which so far is widely used to adsorb organic compounds from aqueous and organic solvents, could provide a broader coverage for (semi)polar VOCs during gas-phase sampling. Mixtures of volatile compounds covering a wide range of volatility (bp. 20-256°C) and different chemical classes were introduced by liquid spiking into sorbent tubes with one of the two porous polymers, Tenax TA or XAD-2, and analyzed by TD/GC-MS. At first, an internal standard mixture composed of 17 authentic standards was used to optimize desorption temperature with respect to sorbent degradation and loading time for calibration. Secondly, we tested the detectability of a complex standard mixture composed of 57 volatiles, most of them common constituents of the body odor of mammals. Moreover, the performance of XAD-2 compared with Tenax TA was assessed as limit of quantitation and linearity for the internal standard mixture and 33 compounds from the complex standard mixture. Volatiles were analyzed in a range between 0.01-∼250ng/tube depending on the compound and material. Lower limits of quantitation were between 0.01 and 3 ng±0.9). Interestingly, we found different kinetics for compound adsorption with XAD-2, and a partially better sensitivity in comparison with Tenax TA. For these analytes, XAD-2 might be recommended as an alternative of Tenax TA for TD/GC-MS analysis. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. Biogenic volatile organic compound (BVOC) emissions from forested areas in Turkey: Determination of specific emission rates for thirty-one tree species

    Energy Technology Data Exchange (ETDEWEB)

    Aydin, Yagmur Meltem; Yaman, Baris; Koca, Husnu; Dasdemir, Okan; Kara, Melik; Altiok, Hasan; Dumanoglu, Yetkin; Bayram, Abdurrahman [Department of Environmental Engineering, Faculty of Engineering, Dokuz Eylul University, Tinaztepe Campus, Buca, Izmir (Turkey); Tolunay, Doganay [Department of Soil Science and Ecology, Faculty of Forestry, Istanbul University, Bahcekoy, Istanbul (Turkey); Odabasi, Mustafa [Department of Environmental Engineering, Faculty of Engineering, Dokuz Eylul University, Tinaztepe Campus, Buca, Izmir (Turkey); Elbir, Tolga, E-mail: tolga.elbir@deu.edu.tr [Department of Environmental Engineering, Faculty of Engineering, Dokuz Eylul University, Tinaztepe Campus, Buca, Izmir (Turkey)

    2014-08-15

    Normalized biogenic volatile organic compound (BVOC) emission rates for thirty one tree species that cover the 98% of national forested areas in Turkey were determined. Field samplings were performed at fourteen different forested areas in Turkey using a specific dynamic enclosure system. The selected branches of tree species were enclosed in a chamber consisted of a transparent Nalofan bag. The air-flows were sampled from both inlet and outlet of the chamber by Tenax-filled sorbent tubes during photosynthesis of trees under the presence of sunlight. Several environmental parameters (temperature, humidity, photosynthetically active radiation-PAR, and CO{sub 2}) were continuously monitored inside and outside the enclosure chamber during the samplings. Collected samples were analyzed using a gas chromatography mass spectrometry (GC/MS) system equipped with a thermal desorber (TD). Sixty five BVOCs classified in five major groups (isoprene, monoterpenes, sesquiterpenes, oxygenated sesquiterpenes, and other oxygenated compounds) were analyzed. Emission rates were determined by normalization to standard conditions (1000 μmol/m{sup 2} s PAR and 30 °C temperature for isoprene and 30 °C temperature for the remaining compounds). In agreement with the literature, isoprene was mostly emitted by broad-leaved trees while coniferous species mainly emitted monoterpenes. Several tree species such as Sweet Chestnut, Silver Lime, and European Alder had higher monoterpene emissions although they are broad-leaved species. High isoprene emissions were also observed for a few coniferous species such as Nordmann Fir and Oriental Spruce. The highest normalized total BVOC emission rate of 27.1 μg/g h was observed for Oriental Plane while South European Flowering Ash was the weakest BVOC emitter with a total normalized emission rate of 0.031 μg/g h. Monoterpene emissions of broad-leaved species mainly consisted of sabinene, limonene and trans-beta-ocimene, while alpha-pinene, beta

  14. Biogenic volatile organic compound (BVOC) emissions from forested areas in Turkey: Determination of specific emission rates for thirty-one tree species

    International Nuclear Information System (INIS)

    Aydin, Yagmur Meltem; Yaman, Baris; Koca, Husnu; Dasdemir, Okan; Kara, Melik; Altiok, Hasan; Dumanoglu, Yetkin; Bayram, Abdurrahman; Tolunay, Doganay; Odabasi, Mustafa; Elbir, Tolga

    2014-01-01

    Normalized biogenic volatile organic compound (BVOC) emission rates for thirty one tree species that cover the 98% of national forested areas in Turkey were determined. Field samplings were performed at fourteen different forested areas in Turkey using a specific dynamic enclosure system. The selected branches of tree species were enclosed in a chamber consisted of a transparent Nalofan bag. The air-flows were sampled from both inlet and outlet of the chamber by Tenax-filled sorbent tubes during photosynthesis of trees under the presence of sunlight. Several environmental parameters (temperature, humidity, photosynthetically active radiation-PAR, and CO 2 ) were continuously monitored inside and outside the enclosure chamber during the samplings. Collected samples were analyzed using a gas chromatography mass spectrometry (GC/MS) system equipped with a thermal desorber (TD). Sixty five BVOCs classified in five major groups (isoprene, monoterpenes, sesquiterpenes, oxygenated sesquiterpenes, and other oxygenated compounds) were analyzed. Emission rates were determined by normalization to standard conditions (1000 μmol/m 2 s PAR and 30 °C temperature for isoprene and 30 °C temperature for the remaining compounds). In agreement with the literature, isoprene was mostly emitted by broad-leaved trees while coniferous species mainly emitted monoterpenes. Several tree species such as Sweet Chestnut, Silver Lime, and European Alder had higher monoterpene emissions although they are broad-leaved species. High isoprene emissions were also observed for a few coniferous species such as Nordmann Fir and Oriental Spruce. The highest normalized total BVOC emission rate of 27.1 μg/g h was observed for Oriental Plane while South European Flowering Ash was the weakest BVOC emitter with a total normalized emission rate of 0.031 μg/g h. Monoterpene emissions of broad-leaved species mainly consisted of sabinene, limonene and trans-beta-ocimene, while alpha-pinene, beta-pinene and

  15. Seasonal variations of stable carbon isotopic composition and biogenic tracer compounds of water-soluble organic aerosols in a deciduous forest

    Directory of Open Access Journals (Sweden)

    Y. Miyazaki

    2012-02-01

    Full Text Available To investigate the seasonal changes in biogenic water-soluble organic carbon (WSOC aerosols in a boreal forest, aerosol samples were collected continuously in the canopy of a deciduous forest in northern Japan during 2009–2010. Stable carbon isotopic composition of WSOC (δ13CWSOC in total suspended particulate matter (TSP exhibited a distinct seasonal cycle, with lower values from June through September (−25.5±0.5 ‰. This cycle follows the net CO2 exchange between the forest ecosystem and the atmosphere, indicating that δ13CWSOC likely reflects the biological activity at the forest site. WSOC concentrations showed the highest values in early summer and autumn. Positive matrix factorization (PMF analysis indicated that the factor in which biogenic secondary organic aerosols (BSOAs dominated accounted for ~40 % of the highest concentrations of WSOC, where BSOAs mostly consisted of α-/β-pinene SOA. In addition, primary biological aerosol particles (PBAPs made similar contributions (~57 % to the WSOC near the forest floor in early summer. This finding indicates that the production of both primary and secondary WSOC aerosols is important during the growing season in a deciduous forest. The methanesulfonic acid (MSA maximum was also found in early summer and had a distinct vertical gradient with larger concentrations near the forest floor. Together with the similar vertical gradients found for WSOC and δ13CWSOC as well as the α-/β-pinene SOA tracers, our results indicate that the forest floor, including ground vegetation and soil, acts as a significant source of WSOC in TSP within a forest canopy at the study site.

  16. Biogenic Volatile Organic Compound (BVOC) emissions from agricultural crop species: is guttation a possible source for methanol emissions following light/dark transition ?

    Science.gov (United States)

    Mozaffar, Ahsan; Amelynck, Crist; Bachy, Aurélie; Digrado, Anthony; Delaplace, Pierre; du Jardin, Patrick; Fauconnier, Marie-Laure; Schoon, Niels; Aubinet, Marc; Heinesch, Bernard

    2015-04-01

    In the framework of the CROSTVOC (CROp STress VOC) project, the exchange of biogenic volatile organic compounds (BVOCs) between two important agricultural crop species, maize and winter wheat, and the atmosphere has recently been measured during an entire growing season by using the eddy covariance technique. Because of the co-variation of BVOC emission drivers in field conditions, laboratory studies were initiated in an environmental chamber in order to disentangle the responses of the emissions to variations of the individual environmental parameters (such as PPFD and temperature) and to diverse abiotic stress factors. Young plants were enclosed in transparent all-Teflon dynamic enclosures (cuvettes) through which BVOC-free and RH-controlled air was sent. BVOC enriched air was subsequently sampled from the plant cuvettes and an empty cuvette (background) and analyzed for BVOCs in a high sensitivity Proton Transfer Reaction Mass Spectrometer (hs-PTR-MS) and for CO2 in a LI-7000 non-dispersive IR gas analyzer. Emissions were monitored at constant temperature (25 °C) and at a stepwise varying PPFD pattern (0-650 µmol m-2 s-1). For maize plants, sudden light/dark transitions at the end of the photoperiod were accompanied by prompt and considerable increases in methanol (m/z 33) and water vapor (m/z 39) emissions. Moreover, guttation droplets appeared on the sides and the tips of the leaves within a few minutes after light/dark transition. Therefore the assumption has been raised that methanol is also coming out with guttation fluid from the leaves. Consequently, guttation fluid was collected from young maize and wheat plants, injected in an empty enclosure and sampled by PTR-MS. Methanol and a large number of other compounds were observed from guttation fluid. Recent studies have shown that guttation from agricultural crops frequently occurs in field conditions. Further research is required to find out the source strength of methanol emissions by this guttation

  17. Diel Variation of Biogenic Volatile Organic Compound Emissions- A field Study in the Sub, Low and High Arctic on the Effect of Temperature and Light

    Science.gov (United States)

    Lindwall, Frida; Faubert, Patrick; Rinnan, Riikka

    2015-01-01

    Many hours of sunlight in the midnight sun period suggest that significant amounts of biogenic volatile organic compounds (BVOCs) may be released from arctic ecosystems during night-time. However, the emissions from these ecosystems are rarely studied and limited to point measurements during daytime. We measured BVOC emissions during 24-hour periods in the field using a push-pull chamber technique and collection of volatiles in adsorbent cartridges followed by analysis with gas chromatography- mass spectrometry. Five different arctic vegetation communities were examined: high arctic heaths dominated by Salix arctica and Cassiope tetragona, low arctic heaths dominated by Salix glauca and Betula nana and a subarctic peatland dominated by the moss Warnstorfia exannulata and the sedge Eriophorum russeolum. We also addressed how climate warming affects the 24-hour emission and how the daytime emissions respond to sudden darkness. The emissions from the high arctic sites were lowest and had a strong diel variation with almost no emissions during night-time. The low arctic sites as well as the subarctic site had a more stable release of BVOCs during the 24-hour period with night-time emissions in the same range as those during the day. These results warn against overlooking the night period when considering arctic emissions. During the day, the quantity of BVOCs and the number of different compounds emitted was higher under ambient light than in darkness. The monoterpenes α-fenchene, α -phellandrene, 3-carene and α-terpinene as well as isoprene were absent in dark measurements during the day. Warming by open top chambers increased the emission rates both in the high and low arctic sites, forewarning higher emissions in a future warmer climate in the Arctic. PMID:25897519

  18. Differential controls by climate and physiology over the emission rates of biogenic volatile organic compounds from mature trees in a semi-arid pine forest.

    Science.gov (United States)

    Eller, Allyson S D; Young, Lindsay L; Trowbridge, Amy M; Monson, Russell K

    2016-02-01

    Drought has the potential to influence the emission of biogenic volatile organic compounds (BVOCs) from forests and thus affect the oxidative capacity of the atmosphere. Our understanding of these influences is limited, in part, by a lack of field observations on mature trees and the small number of BVOCs monitored. We studied 50- to 60-year-old Pinus ponderosa trees in a semi-arid forest that experience early summer drought followed by late-summer monsoon rains, and observed emissions for five BVOCs-monoterpenes, methylbutenol, methanol, acetaldehyde and acetone. We also constructed a throughfall-interception experiment to create "wetter" and "drier" plots. Generally, trees in drier plots exhibited reduced sap flow, photosynthesis, and stomatal conductances, while BVOC emission rates were unaffected by the artificial drought treatments. During the natural, early summer drought, a physiological threshold appeared to be crossed when photosynthesis ≅2 μmol m(-2) s(-1) and conductance ≅0.02 mol m(-2) s(-1). Below this threshold, BVOC emissions are correlated with leaf physiology (photosynthesis and conductance) while BVOC emissions are not correlated with other physicochemical factors (e.g., compound volatility and tissue BVOC concentration) that have been shown in past studies to influence emissions. The proportional loss of C to BVOC emission was highest during the drought primarily due to reduced CO2 assimilation. It appears that seasonal drought changes the relations among BVOC emissions, photosynthesis and conductance. When drought is relaxed, BVOC emission rates are explained mostly by seasonal temperature, but when seasonal drought is maximal, photosynthesis and conductance-the physiological processes which best explain BVOC emission rates-decline, possibly indicating a more direct role of physiology in controlling BVOC emission.

  19. Diel Variation of Biogenic Volatile Organic Compound Emissions--A field Study in the Sub, Low and High Arctic on the Effect of Temperature and Light.

    Science.gov (United States)

    Lindwall, Frida; Faubert, Patrick; Rinnan, Riikka

    2015-01-01

    Many hours of sunlight in the midnight sun period suggest that significant amounts of biogenic volatile organic compounds (BVOCs) may be released from arctic ecosystems during night-time. However, the emissions from these ecosystems are rarely studied and limited to point measurements during daytime. We measured BVOC emissions during 24-hour periods in the field using a push-pull chamber technique and collection of volatiles in adsorbent cartridges followed by analysis with gas chromatography-mass spectrometry. Five different arctic vegetation communities were examined: high arctic heaths dominated by Salix arctica and Cassiope tetragona, low arctic heaths dominated by Salix glauca and Betula nana and a subarctic peatland dominated by the moss Warnstorfia exannulata and the sedge Eriophorum russeolum. We also addressed how climate warming affects the 24-hour emission and how the daytime emissions respond to sudden darkness. The emissions from the high arctic sites were lowest and had a strong diel variation with almost no emissions during night-time. The low arctic sites as well as the subarctic site had a more stable release of BVOCs during the 24-hour period with night-time emissions in the same range as those during the day. These results warn against overlooking the night period when considering arctic emissions. During the day, the quantity of BVOCs and the number of different compounds emitted was higher under ambient light than in darkness. The monoterpenes α-fenchene, α-phellandrene, 3-carene and α-terpinene as well as isoprene were absent in dark measurements during the day. Warming by open top chambers increased the emission rates both in the high and low arctic sites, forewarning higher emissions in a future warmer climate in the Arctic.

  20. Biogenic volatile organic compounds as potential carbon sources for microbial communities in soil from the rhizosphere of Populus tremula.

    Science.gov (United States)

    Owen, Susan M; Clark, Stuart; Pompe, Matevz; Semple, Kirk T

    2007-03-01

    Catabolism of a (14)C-labelled volatile monoterpene compound (geraniol) to (14)CO(2) was investigated in soils taken from the rhizosphere at distances up to 200 cm from the trunks of three small Populus tremula trees growing at different sites in Slovenia. Emissions of limonene of up to 18 microg m(-2) h(-1) were detected from the soil surface at each site. Evolution of (14)C-labelled CO(2) was measured as a product of catabolism of (14)C-labelled geraniol introduced into the soil samples. Indigenous soil microorganisms degraded the geraniol rapidly. There was a significant difference in relative lag times and rates of catabolism along the gradient from the tree trunks, with relatively longer lag times and lower rates occurring in soil samples from the farthest point from the tree.

  1. Biogenic volatile organic compound (BVOC) emissions from forested areas in Turkey: determination of specific emission rates for thirty-one tree species.

    Science.gov (United States)

    Aydin, Yagmur Meltem; Yaman, Baris; Koca, Husnu; Dasdemir, Okan; Kara, Melik; Altiok, Hasan; Dumanoglu, Yetkin; Bayram, Abdurrahman; Tolunay, Doganay; Odabasi, Mustafa; Elbir, Tolga

    2014-08-15

    Normalized biogenic volatile organic compound (BVOC) emission rates for thirty one tree species that cover the 98% of national forested areas in Turkey were determined. Field samplings were performed at fourteen different forested areas in Turkey using a specific dynamic enclosure system. The selected branches of tree species were enclosed in a chamber consisted of a transparent Nalofan bag. The air-flows were sampled from both inlet and outlet of the chamber by Tenax-filled sorbent tubes during photosynthesis of trees under the presence of sunlight. Several environmental parameters (temperature, humidity, photosynthetically active radiation-PAR, and CO2) were continuously monitored inside and outside the enclosure chamber during the samplings. Collected samples were analyzed using a gas chromatography mass spectrometry (GC/MS) system equipped with a thermal desorber (TD). Sixty five BVOCs classified in five major groups (isoprene, monoterpenes, sesquiterpenes, oxygenated sesquiterpenes, and other oxygenated compounds) were analyzed. Emission rates were determined by normalization to standard conditions (1000 μmol/m(2)s PAR and 30 °C temperature for isoprene and 30 °C temperature for the remaining compounds). In agreement with the literature, isoprene was mostly emitted by broad-leaved trees while coniferous species mainly emitted monoterpenes. Several tree species such as Sweet Chestnut, Silver Lime, and European Alder had higher monoterpene emissions although they are broad-leaved species. High isoprene emissions were also observed for a few coniferous species such as Nordmann Fir and Oriental Spruce. The highest normalized total BVOC emission rate of 27.1 μg/gh was observed for Oriental Plane while South European Flowering Ash was the weakest BVOC emitter with a total normalized emission rate of 0.031 μg/gh. Monoterpene emissions of broad-leaved species mainly consisted of sabinene, limonene and trans-beta-ocimene, while alpha-pinene, beta-pinene and beta

  2. Emissions of biogenic volatile organic compounds and subsequent photochemical production of secondary organic aerosol in mesocosm studies of temperate and tropical plant species

    Science.gov (United States)

    Wyche, K. P.; Ryan, A. C.; Hewitt, C. N.; Alfarra, M. R.; McFiggans, G.; Carr, T.; Monks, P. S.; Smallbone, K. L.; Capes, G.; Hamilton, J. F.; Pugh, T. A. M.; MacKenzie, A. R.

    2014-12-01

    Silver birch (Betula pendula) and three Southeast Asian tropical plant species (Ficus cyathistipula, Ficus benjamina and Caryota millis) from the pantropical fig and palm genera were grown in a purpose-built and environment-controlled whole-tree chamber. The volatile organic compounds emitted from these trees were characterised and fed into a linked photochemical reaction chamber where they underwent photo-oxidation under a range of controlled conditions (relative humidity or RH ~65-89%, volatile organic compound-to-NOx or VOC / NOx ~3-9 and NOx ~2 ppbV). Both the gas phase and the aerosol phase of the reaction chamber were monitored in detail using a comprehensive suite of on-line and off-line chemical and physical measurement techniques. Silver birch was found to be a high monoterpene and sesquiterpene but low isoprene emitter, and its emissions were observed to produce measurable amounts of secondary organic aerosol (SOA) via both nucleation and condensation onto pre-existing seed aerosol (YSOA 26-39%). In contrast, all three tropical species were found to be high isoprene emitters with trace emissions of monoterpenes and sesquiterpenes. In tropical plant experiments without seed aerosol there was no measurable SOA nucleation, but aerosol mass was shown to increase when seed aerosol was present. Although principally isoprene emitting, the aerosol mass produced from tropical fig was mostly consistent (i.e. in 78 out of 120 aerosol mass calculations using plausible parameter sets of various precursor specific yields) with condensation of photo-oxidation products of the minor volatile organic compounds (VOCs) co-emitted; no significant aerosol yield from condensation of isoprene oxidation products was required in the interpretations of the experimental results. This finding is in line with previous reports of organic aerosol loadings consistent with production from minor biogenic VOCs co-emitted with isoprene in principally isoprene-emitting landscapes in Southeast

  3. Biogenic volatile organic compound and respiratory CO2 emissions after 13C-labeling: online tracing of C translocation dynamics in poplar plants.

    Science.gov (United States)

    Ghirardo, Andrea; Gutknecht, Jessica; Zimmer, Ina; Brüggemann, Nicolas; Schnitzler, Jörg-Peter

    2011-02-28

    Globally plants are the primary sink of atmospheric CO(2), but are also the major contributor of a large spectrum of atmospheric reactive hydrocarbons such as terpenes (e.g. isoprene) and other biogenic volatile organic compounds (BVOC). The prediction of plant carbon (C) uptake and atmospheric oxidation capacity are crucial to define the trajectory and consequences of global environmental changes. To achieve this, the biosynthesis of BVOC and the dynamics of C allocation and translocation in both plants and ecosystems are important. We combined tunable diode laser absorption spectrometry (TDLAS) and proton transfer reaction mass spectrometry (PTR-MS) for studying isoprene biosynthesis and following C fluxes within grey poplar (Populus x canescens) saplings. This was achieved by feeding either (13)CO(2) to leaves or (13)C-glucose to shoots via xylem uptake. The translocation of (13)CO(2) from the source to other plant parts could be traced by (13)C-labeled isoprene and respiratory (13)CO(2) emission. In intact plants, assimilated (13)CO(2) was rapidly translocated via the phloem to the roots within 1 hour, with an average phloem transport velocity of 20.3±2.5 cm h(-1). (13)C label was stored in the roots and partially reallocated to the plants' apical part one day after labeling, particularly in the absence of photosynthesis. The daily C loss as BVOC ranged between 1.6% in mature leaves and 7.0% in young leaves. Non-isoprene BVOC accounted under light conditions for half of the BVOC C loss in young leaves and one-third in mature leaves. The C loss as isoprene originated mainly (76-78%) from recently fixed CO(2), to a minor extent from xylem-transported sugars (7-11%) and from photosynthetic intermediates with slower turnover rates (8-11%). We quantified the plants' C loss as respiratory CO(2) and BVOC emissions, allowing in tandem with metabolic analysis to deepen our understanding of ecosystem C flux.

  4. Assessment of a relaxed eddy accumulation for measurements of fluxes of biogenic volatile organic compounds: Study over arable crops and a mature beech forest

    DEFF Research Database (Denmark)

    Gallagher, M.W.; Clayborough, R.; Beswick, K.M.

    2000-01-01

    A relaxed eddy accumulation (REA) system, based on the design by Beverland et al. (Journal of Geophysics Research 101 (D17) 22, 807-22, 815), for the measurement of biogenic VOC species was evaluated by intercomparison with an eddy correlation CO2 flux system over a mature deciduous beech canopy ...

  5. [Advances in researches of biogenic molluscicides].

    Science.gov (United States)

    Xue, Li; Jian-Rong, Dai; Yun-Tian, Xing

    2017-01-05

    Biogenic molluscicides refer to the use of plants, animals and micro-organisms or their metabolites, and synthesis biomimetic molluscicides to kill Oncomelania hupensis snails. With the rapid development of science and technology, new biogenic molluscicides are continuously emerging and the category also continues to expand. According to the molluscicidal active ingredient and sources, at present, the biogenic molluscicides with in-depth studies include plant-derived molluscicides, micro-organism molluscicides, microbial metabolite molluscicides and animal molluscicides. This paper reviews the advances in the researches of biogenic molluscicides in recent years.

  6. Operation of marine diesel engines on biogenic fuels: modification of emissions and resulting climate effects.

    Science.gov (United States)

    Petzold, Andreas; Lauer, Peter; Fritsche, Uwe; Hasselbach, Jan; Lichtenstern, Michael; Schlager, Hans; Fleischer, Fritz

    2011-12-15

    The modification of emissions of climate-sensitive exhaust compounds such as CO(2), NO(x), hydrocarbons, and particulate matter from medium-speed marine diesel engines was studied for a set of fossil and biogenic fuels. Applied fossil fuels were the reference heavy fuel oil (HFO) and the low-sulfur marine gas oil (MGO); biogenic fuels were palm oil, soybean oil, sunflower oil, and animal fat. Greenhouse gas (GHG) emissions related to the production of biogenic fuels were treated by means of a fuel life cycle analysis which included land use changes associated with the growth of energy plants. Emissions of CO(2) and NO(x) per kWh were found to be similar for fossil fuels and biogenic fuels. PM mass emission was reduced to 10-15% of HFO emissions for all low-sulfur fuels including MGO as a fossil fuel. Black carbon emissions were reduced significantly to 13-30% of HFO. Changes in emissions were predominantly related to particulate sulfate, while differences between low-sulfur fossil fuels and low-sulfur biogenic fuels were of minor significance. GHG emissions from the biogenic fuel life cycle (FLC) depend crucially on energy plant production conditions and have the potential of shifting the overall GHG budget from positive to negative compared to fossil fuels.

  7. Evaluation of monoterpenic biogenic volatile organic compounds in ambient air around Eucalyptus globulus, Pinus halepensis and Cedrus atlantica trees growing in Algiers city area by chiral and achiral capillary gas chromatography

    Science.gov (United States)

    Yassaa, Noureddine; Youcef Meklati, Brahim; Cecinato, Angelo

    The monoterpenic biogenic volatile organic compounds (BVOCs) in ambient air around either Eucalyptus globulus, Cedrus atlantica and Pinus halepensis trees from El- Hamma Botanical Garden (Algiers) or from Pinus halepensis trees field located in Bab-Ezzouar (suburb of Algiers) was qualitatively and semi-quantitatively evaluated. The sampling was carried out in ambient air by adsorption through an activated charcoal cartridge followed by the carbon disulfide extraction. The solution was subjected to high-resolution gas chromatography (HRGC) analysis in programmed temperature. The identification of the components was established by the means of retention Kovàts indexes. The use of a β-cyclodextrin chiral capillary column allowed a good separation of monoterpenic enantiomers released in the atmosphere. The enantiomeric ratio provided a good insight into the enantiomeric compound preferentially emitted by plants.

  8. Thermodynamic and transport properties of plasmas including silicon-based compounds

    Science.gov (United States)

    Colonna, G.; D’Angola, A.; Pietanza, L. D.; Capitelli, M.; Pirani, F.; Stevanato, E.; Laricchiuta, A.

    2018-01-01

    The characterization of the thermodynamic and transport properties of plasmas including silicon species could be of great interest for the investigation of many different systems containing the product of the ablation of silicon-based materials. Different plasma systems (pure silicon, silicon–argon, silicon dioxide and silicon carbide) have been investigated in a wide temperature range (103–4 104 K) and for different pressures (1, 10, 30 and 100 atm), relying on the construction of accurate and extended databases of internal energy levels and binary-interaction transport cross sections for the silicon compounds. The results have been compared with the available results in the literature also studying the dependence on the ratio of components.

  9. 21 CFR 700.13 - Use of mercury compounds in cosmetics including use as skinbleaching agents in cosmetic...

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 7 2010-04-01 2010-04-01 false Use of mercury compounds in cosmetics including...) COSMETICS GENERAL Requirements for Specific Cosmetic Products § 700.13 Use of mercury compounds in cosmetics including use as skinbleaching agents in cosmetic preparations also regarded as drugs. (a) Mercury...

  10. Methyl chavicol: characterization of its biogenic emission rate

    NARCIS (Netherlands)

    Bouvier-Brown, N.C.; Goldstein, A.H.; Worton, D.R.; Matross, D.M.; Gilman, J.B.; Kuster, W.C.; Welsh-Bon, D.; Warneke, C.; de Gouw, J.A.; Cahill, M.J.; Holzinger, R.

    2009-01-01

    We report measurements of ambient atmospheric mixing ratios for methyl chavicol and determine its biogenic emission rate. Methyl chavicol, a biogenic oxygenated aromatic compound, is abundant within and above Blodgett Forest, a ponderosa pine forest in the Sierra Nevada Mountains of California.

  11. Analysis of biogenic carbonyl compounds in rainwater by stir bar sorptive extraction technique with chemical derivatization and gas chromatography-mass spectrometry.

    Science.gov (United States)

    Pang, Xiaobing; Lewis, Alastair C; Shaw, Marvin D

    2017-02-01

    Stir bar sorptive extraction is a powerful technique for the extraction and analysis of organic compounds in aqueous matrices. Carbonyl compounds are ubiquitous components in rainwater, however, it is a major challenge to accurately identify and sensitively quantify carbonyls from rainwater due to the complex matrix. A stir bar sorptive extraction technique was developed to efficiently extract carbonyls from aqueous samples following chemical derivatization by O-(2,3,4,5,6-pentafluorobenzyl) hydroxylamine hydrochloride. Several commercial stir bars in two sizes were used to simultaneously measure 29 carbonyls in aqueous samples with detection by gas chromatography with mass spectrometry. A 100 mL aqueous sample was extracted by stir bars and the analytes on stir bars were desorbed into a 2 mL solvent solution in an ultrasonic bath. The preconcentration Coefficient for different carbonyls varied between 30 and 45 times. The limits of detection of stir bar sorptive extraction with gas chromatography mass spectrometry for carbonyls (10-30 ng/L) were improved by ten times compared with other methods such as gas chromatography with electron capture detection and stir bar sorptive extraction with high-performance liquid chromatography and mass spectrometry. The technique was used to determine carbonyls in rainwater samples collected in York, UK, and 20 carbonyl species were quantified including glyoxal, methylglyoxal, isobutenal, 2-hydroxy ethanal. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. Simulation of Injection Molding Process Including Mold Filling and Compound Curing

    Directory of Open Access Journals (Sweden)

    Mohamad Reza Erfanian

    2012-12-01

    Full Text Available The present work reports and discusses the results of a 3D simulation of the injection molding process of a rubber compound that includes the mold flling stage and  material curing, using the computer code is developed in “UDF” part of the Fluent 6.3 CAE software. The data obtained from a rheometer (MDR 2000 is used to characterize the rubber material in order to fnd the cure model parameters which exist in curing model. Because of non-newtonian behavior of rubber, in this work the non-newtonian model for viscosity was used and viscosity parameters were computed by mean of viscometry test by RPA. After calculation of the physical and curing properties, vulcanization process was simulated for a complex rubber article with non-uniform thickness by solving the continuity, momentum, energy and curing process equations. Predicted flling and curing time in a complex and 3D rubber part is compared with experimentally measured data which confrmed  the accuracy and applicability of the method.

  13. Climate/chemistry feedbacks and biogenic emissions.

    Science.gov (United States)

    Pyle, John A; Warwick, Nicola; Yang, Xin; Young, Paul J; Zeng, Guang

    2007-07-15

    The oxidizing capacity of the atmosphere is affected by anthropogenic emissions and is projected to change in the future. Model calculations indicate that the change in surface ozone at some locations could be large and have significant implications for human health. The calculations depend on the precise scenarios used for the anthropogenic emissions and on the details of the feedback processes included in the model. One important factor is how natural biogenic emissions will change in the future. We carry out a sensitivity calculation to address the possible increase in isoprene emissions consequent on increased surface temperature in a future climate. The changes in ozone are significant but depend crucially on the background chemical regime. In these calculations, we find that increased isoprene will increase ozone in the Northern Hemisphere but decrease ozone in the tropics. We also consider the role of bromine compounds in tropospheric chemistry and consider cases where, in a future climate, the impact of bromine could change.

  14. Update on medical and regulatory issues pertaining to compounded and FDA-approved drugs, including hormone therapy.

    Science.gov (United States)

    Pinkerton, JoAnn V; Pickar, James H

    2016-02-01

    We review the historical regulation of drug compounding, concerns about widespread use of non-Food and Drug Admiistration (FDA)-approved compounded bioidentical hormone therapies (CBHTs), which do not have proper labeling and warnings, and anticipated impact of the 2013 Drug Quality and Security Act (DQSA) on compounding. US government websites were searched for documents concerning drug compounding regulation and oversight from 1938 (passage of Federal Food, Drug, and Cosmetic Act [FDCA]) through 2014, including chronologies, Congressional testimony, FDA guidelines and enforcements, and reports. The FDCA and DQSA were reviewed. PubMed and Google were searched for articles on compounded drugs, including CBHT. Congress explicitly granted the FDA limited oversight of compounded drugs in a 1997 amendment to the FDCA, but the FDA has encountered obstacles in exercising that authority. After 64 patient deaths and 750 adversely affected patients from the 2012 meningitis outbreak due to contaminated compounded steroid injections, Congress passed the DQSA, authorizing the FDA to create a voluntary registration for facilities that manufacture and distribute sterile compounded drugs in bulk and reinforcing FDCA regulations for traditional compounding. Given history and current environment, concerns remain about CBHT product regulation and their lack of safety and efficacy data. The DQSA and its reinforcement of §503A of the FDCA solidifies FDA authority to enforce FDCA provisions against compounders of CBHT. The new law may improve compliance and accreditation by the compounding industry; support state and FDA oversight; and prevent the distribution of misbranded, adulterated, or inconsistently compounded medications, and false and misleading claims, thus reducing public health risk.

  15. A curved multi-component aerosol hygroscopicity model framework: Part 2 – Including organic compounds

    Directory of Open Access Journals (Sweden)

    D. O. Topping

    2005-01-01

    Full Text Available This paper describes the inclusion of organic particulate material within the Aerosol Diameter Dependent Equilibrium Model (ADDEM framework described in the companion paper applied to inorganic aerosol components. The performance of ADDEM is analysed in terms of its capability to reproduce the behaviour of various organic and mixed inorganic/organic systems using recently published bulk data. Within the modelling architecture already described two separate thermodynamic models are coupled in an additive approach and combined with a method for solving the Kohler equation in order to develop a tool for predicting the water content associated with an aerosol of known inorganic/organic composition and dry size. For development of the organic module, the widely used group contribution method UNIFAC is employed to explicitly deal with the non-ideality in solution. The UNIFAC predictions for components of atmospheric importance were improved considerably by using revised interaction parameters derived from electro-dynamic balance studies. Using such parameters, the model was found to adequately describe mixed systems including 5–6 dicarboxylic acids, down to low relative humidity conditions. By comparison with electrodynamic balance data, it was also found that the model was capable of capturing the behaviour of aqueous aerosols containing Suwannee River Fulvic acid, a structure previously used to represent the functionality of complex oxidised macromolecules often found in atmospheric aerosols. The additive approach for modelling mixed inorganic/organic systems worked well for a variety of mixtures. As expected, deviations between model predictions and measurements increase with increasing concentration. Available surface tension models, used in evaluating the Kelvin term, were found to reproduce measured data with varying success. Deviations from experimental data increased with increased organic compound complexity. For components only slightly

  16. A curved multi-component aerosol hygroscopicity model framework: Part 2 Including organic compounds

    Science.gov (United States)

    Topping, D. O.; McFiggans, G. B.; Coe, H.

    2005-05-01

    This paper describes the inclusion of organic particulate material within the Aerosol Diameter Dependent Equilibrium Model (ADDEM) framework described in the companion paper applied to inorganic aerosol components. The performance of ADDEM is analysed in terms of its capability to reproduce the behaviour of various organic and mixed inorganic/organic systems using recently published bulk data. Within the modelling architecture already described two separate thermodynamic models are coupled in an additive approach and combined with a method for solving the Kohler equation in order to develop a tool for predicting the water content associated with an aerosol of known inorganic/organic composition and dry size. For development of the organic module, the widely used group contribution method UNIFAC is employed to explicitly deal with the non-ideality in solution. The UNIFAC predictions for components of atmospheric importance were improved considerably by using revised interaction parameters derived from electro-dynamic balance studies. Using such parameters, the model was found to adequately describe mixed systems including 5-6 dicarboxylic acids, down to low relative humidity conditions. By comparison with electrodynamic balance data, it was also found that the model was capable of capturing the behaviour of aqueous aerosols containing Suwannee River Fulvic acid, a structure previously used to represent the functionality of complex oxidised macromolecules often found in atmospheric aerosols. The additive approach for modelling mixed inorganic/organic systems worked well for a variety of mixtures. As expected, deviations between model predictions and measurements increase with increasing concentration. Available surface tension models, used in evaluating the Kelvin term, were found to reproduce measured data with varying success. Deviations from experimental data increased with increased organic compound complexity. For components only slightly soluble in water

  17. Biogenic Emission Sources

    Science.gov (United States)

    Biogenic emissions sources come from natural sources and need to accounted for in photochemical grid models. They are computed using a model which utilizes spatial information on vegetation and land use.

  18. LBA-ECO TG-02 Biogenic VOC Emissions from Brazilian Amazon Forest and Pasture Sites

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: This data set reports concentrations of biogenic volatile organic compounds (BVOCs) collected from tethered balloon-sampling platforms above selected...

  19. LBA-ECO TG-02 Biogenic VOC Emissions from Brazilian Amazon Forest and Pasture Sites

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set reports concentrations of biogenic volatile organic compounds (BVOCs) collected from tethered balloon-sampling platforms above selected forest and...

  20. To what extent can biogenic SOA be controlled?

    Science.gov (United States)

    Carlton, Annmarie G; Pinder, Robert W; Bhave, Prakash V; Pouliot, George A

    2010-05-01

    The implicit assumption that biogenic secondary organic aerosol (SOA) is natural and can not be controlled hinders effective air quality management. Anthropogenic pollution facilitates transformation of naturally emitted volatile organic compounds (VOCs) to the particle phase, enhancing the ambient concentrations of biogenic secondary organic aerosol (SOA). It is therefore conceivable that some portion of ambient biogenic SOA can be removed by controlling emissions of anthropogenic pollutants. Direct measurement of the controllable fraction of biogenic SOA is not possible, but can be estimated through 3-dimensional photochemical air quality modeling. To examine this in detail, 22 CMAQ model simulations were conducted over the continental U.S. (August 15 to September 4, 2003). The relative contributions of five emitted pollution classes (i.e., NO(x), NH(3), SO(x), reactive non methane carbon (RNMC) and primary carbonaceous particulate matter (PCM)) on biogenic SOA were estimated by removing anthropogenic emissions of these pollutants, one at a time and all together. Model results demonstrate a strong influence of anthropogenic emissions on predicted biogenic SOA concentrations, suggesting more than 50% of biogenic SOA in the eastern U.S. can be controlled. Because biogenic SOA is substantially enhanced by controllable emissions, classification of SOA as biogenic or anthropogenic based solely on VOC origin is not sufficient to describe the controllable fraction.

  1. Odd-Z Transactinide Compound Nucleus Reactions Including the Discovery of 260Bh

    Energy Technology Data Exchange (ETDEWEB)

    Nelson, Sarah L. [Univ. of California, Berkeley, CA (United States)

    2008-01-01

    Several reactions producing odd-Z transactinide compound nuclei were studiedwith the 88-Inch Cyclotron and the Berkeley Gas-Filled Separator at the Lawrence Berkeley National Laboratory. The goal was to produce the same compound nucleus ator near the same excitation energy with similar values of angular momentum via differentnuclear reactions. In doing so, it can be determined if there is a preference in entrancechannel, because under these experimental conditions the survival portion of Swiatecki, Siwek-Wilcznska, and Wilczynski's"Fusion By Diffusion" model is nearly identical forthe two reactions. Additionally, because the same compound nucleus is produced, theexit channel is the same. Four compound nuclei were examined in this study: 258Db, 262Bh, 266Mt, and 272Rg. These nuclei were produced by using very similar heavy-ion induced-fusion reactions which differ only by one proton in the projectile or target nucleus (e.g.: 50Ti + 209Bi vs. 51V + 208Pb). Peak 1n exit channel cross sections were determined for each reaction in each pair, and three of the four pairs' cross sections were identical within statistical uncertainties. This indicates there is not an obvious preference of entrancechannel in these paired reactions. Charge equilibration immediately prior to fusionleading to a decreased fusion barrier is the likely cause of this phenomenon. In addition to this systematic study, the lightest isotope of element 107, bohrium, was discovered in the 209Bi(52Cr,n) reaction. 260Bh was found to decay by emission of a 10.16 MeV alpha particle with a half-life of 35$+19\\atop{-9}$ ms. The cross section is 59 pb at an excitation energy of 15.0 MeV. The effect of the N = 152 shell is also seen in this isotope's alpha particle energy, the first evidence of such an effect in Bh. All reactions studied are also compared to model predictions by Swiatecki

  2. Framework for Assessing Biogenic CO2 Emissions from ...

    Science.gov (United States)

    This revision of the 2011 report, Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, evaluates biogenic CO2 emissions from stationary sources, including a detailed study of the scientific and technical issues associated with assessing biogenic carbon dioxide emissions from stationary sources. EPA developed the revised report, Framework for Assessing Biogenic CO2 Emissions from Stationary Sources, to present a methodological framework for assessing the extent to which the production, processing, and use of biogenic material at stationary sources for energy production results in a net atmospheric contribution of biogenic CO2 emissions. Biogenic carbon dioxide emissions are defined as CO2 emissions related to the natural carbon cycle, as well as those resulting from the production, harvest, combustion, digestion, decomposition, and processing of biologically-based materials. The EPA is continuing to refine its technical assessment of biogenic CO2 emissions through another round of targeted peer review of the revised study with the EPA Science Advisory Board (SAB). This study was submitted to the SAB's Biogenic Carbon Emissions Panel in February 2015. http://yosemite.epa.gov/sab/sabproduct.nsf/0/3235dac747c16fe985257da90053f252!OpenDocument&TableRow=2.2#2 The revised report will inform efforts by policymakers, academics, and other stakeholders to evaluate the technical aspects related to assessments of biogenic feedstocks used for energy at s

  3. New 1,3,4-thiadiazole compounds including pyrazine moiety: Synthesis, structural properties and antimicrobial features

    Science.gov (United States)

    Gür, Mahmut; Şener, Nesrin; Muğlu, Halit; Çavuş, M. Serdar; Özkan, Osman Emre; Kandemirli, Fatma; Şener, İzzet

    2017-07-01

    In the study, some new 1,3,4-thiadiazole compounds were synthesized and we have reported identification of the structures by using UV-Vis, FT-IR, 1H NMR, 13C NMR and Mass spectroscopic methods. Antimicrobial activities of the compounds against three microorganisms, namely, Candida albicans ATCC 26555, Staphylococcus aureus ATCC 9144, and Escherichia coli ATCC 25922 were investigated by using disk diffusion method. These thiadiazoles exhibited an antimicrobial activity against Staphylococcus aureus and Candida albicans. The experimental data was supported by the quantum chemical calculations. Density functional theory (DFT) calculations were carried out to obtain the ground state optimized geometries of the molecules using the B3LYP, M06 and PBE1PBE methods with 3-21 g, 4-31 g, 6-311++g(2d,2p), cc-pvtz and cc-pvqz basis sets in the different combinations. Frontier molecular orbitals (FMOs) energies, band gap energies and some chemical reactivity parameters were calculated by using the aforementioned methods and basis sets, and the results were also compared with the experimental UV-Vis data.

  4. Unconventional shallow biogenic gas systems

    Science.gov (United States)

    Shurr, G.W.; Ridgley, J.L.

    2002-01-01

    Unconventional shallow biogenic gas falls into two distinct systems that have different attributes. Early-generation systems have blanketlike geometries, and gas generation begins soon after deposition of reservoir and source rocks. Late-generation systems have ringlike geometries, and long time intervals separate deposition of reservoir and source rocks from gas generation. For both types of systems, the gas is dominantly methane and is associated with source rocks that are not thermally mature. Early-generation biogenic gas systems are typified by production from low-permeability Cretaceous rocks in the northern Great Plains of Alberta, Saskatchewan, and Montana. The main area of production is on the southeastern margin of the Alberta basin and the northwestern margin of the Williston basin. The huge volume of Cretaceous rocks has a generalized regional pattern of thick, non-marine, coarse clastics to the west and thinner, finer grained marine lithologies to the east. Reservoir rocks in the lower part tend to be finer grained and have lower porosity and permeability than those in the upper part. Similarly, source beds in the units have higher values of total organic carbon. Patterns of erosion, deposition, deformation, and production in both the upper and lower units are related to the geometry of lineament-bounded basement blocks. Geochemical studies show that gas and coproduced water are in equilibrium and that the fluids are relatively old, namely, as much as 66 Ma. Other examples of early-generation systems include Cretaceous clastic reservoirs on the southwestern margin of Williston basin and chalks on the eastern margin of the Denver basin. Late-generation biogenic gas systems have as an archetype the Devonian Antrim Shale on the northern margin of the Michigan basin. Reservoir rocks are fractured, organic-rich black shales that also serve as source rocks. Although fractures are important for production, the relationships to specific geologic structures are

  5. Biogenic contribution to PM-2.5 ambient aerosol from radiocarbon measurements

    Science.gov (United States)

    Lewis, C.; Klouda, G.; Ellenson, W.

    2003-04-01

    Knowledge of the relative contributions of biogenic versus anthropogenic sources to ambient aerosol is of great interest in the formulation of strategies to achieve nationally mandated air quality standards. Radiocarbon (14C) measurements provide a means to quantify the biogenic fraction of any carbon-containing sample of ambient aerosol. In the absence of an impact from biomass burning (e.g., during summertime) such measurements can provide an estimate of the contribution of biogenic secondary organic aerosol, from biogenic volatile organic compound precursors. Radiocarbon results for 11.5-h PM-2.5 samples collected near Nashville, Tennessee, USA, during summer 1999 will be presented. On average the measured biogenic fraction was surprisingly large (more than half), with the average biogenic fraction for night samples being only slightly smaller than for day samples. Discussion will include (a) description of the radiocarbon methodology, (b) use of radiocarbon measurements on local vegetation and fuel samples as calibration data, (c) concurrent measurements of organic carbon and elemental carbon ambient concentrations, (d) assessment of organic aerosol sampling artifact through use of organic vapor denuders, variable face velocities, and filter extraction, and (e) comparison with published radiocarbon results obtained in Houston, Texas in a similar study. Disclaimer: This work has been funded wholly or in part by the United States Environmental Protection Agency under Interagency Agreement No. 13937923 to the National Institute of Standards and Technology, and Contract No. 68-D5-0049 to ManTech Environmental Tecnology, Inc. It has been subjected to Agency review and approved for publication.

  6. Targeting polyamines and biogenic amines by green tea epigallocatechin-3-gallate.

    Science.gov (United States)

    Melgarejo, Esther; Urdiales, José Luis; Sánchez-Jiménez, Francisca; Medina, Miguel Angel

    2010-02-01

    Biogenic amines and polyamines are organic polycations derived from aromatic or cationic amino acids. They exert pleiotropic effects, more related to intercellular communication in the case of biogenic amines, and to intracellular signaling in the case of polyamines. The bioactive compound epigallocatechin-3-gallate (EGCG), a major component of green tea, has been shown to target key enzyme of biogenic amine and polyamine metabolic pathways. Herein, we review the specific effects of EGCG on concrete molecular targets of both biogenic amine and polyamine metabolic pathways, and discuss the relevance of these data to support the potential therapeutic interest of this compound.

  7. Performance of the JULES land surface model for UK Biogenic VOC emissions

    Science.gov (United States)

    Hayman, Garry; Comyn-Platt, Edward; Vieno, Massimo; Langford, Ben

    2017-04-01

    Emissions of biogenic non-methane volatile organic compounds (NMVOCs) are important for air quality and tropospheric composition. Through their contribution to the production of tropospheric ozone and secondary organic aerosol (SOA), biogenic VOCs indirectly contribute to climate forcing and climate feedbacks [1]. Biogenic VOCs encompass a wide range of compounds and are produced by plants for growth, development, reproduction, defence and communication [2]. There are both biological and physico-chemical controls on emissions [3]. Only a few of the many biogenic VOCs are of wider interest and only two or three (isoprene and the monoterpenes, α- and β-pinene) are represented in chemical transport models. We use the Joint UK Land Environment Simulator (JULES), the UK community land surface model, to estimate biogenic VOC emission fluxes. JULES is a process-based model that describes the water, energy and carbon balances and includes temperature, moisture and carbon stores [4, 5]. JULES currently provides emission fluxes of the 4 largest groups of biogenic VOCs: isoprene, terpenes, methanol and acetone. The JULES isoprene scheme uses gross primary productivity (GPP), leaf internal carbon and the leaf temperature as a proxy for the electron requirement for isoprene synthesis [6]. In this study, we compare JULES biogenic VOC emission estimates of isoprene and terepenes with (a) flux measurements made at selected sites in the UK and Europe and (b) gridded estimates for the UK from the EMEP/EMEP4UK atmospheric chemical transport model [7, 8], using site-specific or EMEP4UK driving meteorological data, respectively. We compare the UK-scale emission estimates with literature estimates. We generally find good agreement in the comparisons but the estimates are sensitive to the choice of the base or reference emission potentials. References (1) Unger, 2014: Geophys. Res. Lett., 41, 8563, doi:10.1002/2014GL061616; (2) Laothawornkitkul et al., 2009: New Phytol., 183, 27, doi

  8. Recent trends in the determination of biogenic amines in fermented beverages – A review

    Energy Technology Data Exchange (ETDEWEB)

    Ordóñez, José Luis; Troncoso, Ana Maria; García-Parrilla, Maria Del Carmen; Callejón, Raquel Maria, E-mail: rcallejon@us.es

    2016-10-05

    Biogenic amines (BA) are generally considered as a food hazard, even though there is not a threshold for these biomolecules in the European legislation, except for histamine in fishery products. These compounds are formed during the storage and processing of certain foods through microbiological activity, and when present in high concentrations, could have toxicological effects, causing health problems in consumers, especially to sensitive persons. This fact, in addition to the economical concern involved, makes it necessary to control the amounts of biogenic amines in foods. For all these reasons, literature on biogenic amines in different food products, especially in fermented beverages, is extensive. This review provides an overview of the most recent trends in the determination of biogenic amines in fermented beverages focusing on novelty, improvement and optimization of analytical methods. Hence, the different sample treatment procedures (including derivatization), the most important analytical techniques and the most frequent applications are described and discussed. Although biogenic amines have been determined in wine and other fermented beverages for decades, new advancements and technical possibilities have allowed to increase the accuracy and sensitivity of analytical methods, in order to overcome the challenges posed by the complex matrices and their high intrinsic variability. Thus, the different purposes of BA determination (food safety, production process or food microbiology research) and the most widely employed analytical techniques have been reviewed. - Highlights: • A critical review on analytical methods for BA in fermented beverages is presented. • Recent sample treatments and analytical techniques are described and discussed. • A previous derivatization is needed in most liquid chromatographic methods. • BA determination is related to food safety, production process or microbiology research.

  9. Recent trends in the determination of biogenic amines in fermented beverages – A review

    International Nuclear Information System (INIS)

    Ordóñez, José Luis; Troncoso, Ana Maria; García-Parrilla, Maria Del Carmen; Callejón, Raquel Maria

    2016-01-01

    Biogenic amines (BA) are generally considered as a food hazard, even though there is not a threshold for these biomolecules in the European legislation, except for histamine in fishery products. These compounds are formed during the storage and processing of certain foods through microbiological activity, and when present in high concentrations, could have toxicological effects, causing health problems in consumers, especially to sensitive persons. This fact, in addition to the economical concern involved, makes it necessary to control the amounts of biogenic amines in foods. For all these reasons, literature on biogenic amines in different food products, especially in fermented beverages, is extensive. This review provides an overview of the most recent trends in the determination of biogenic amines in fermented beverages focusing on novelty, improvement and optimization of analytical methods. Hence, the different sample treatment procedures (including derivatization), the most important analytical techniques and the most frequent applications are described and discussed. Although biogenic amines have been determined in wine and other fermented beverages for decades, new advancements and technical possibilities have allowed to increase the accuracy and sensitivity of analytical methods, in order to overcome the challenges posed by the complex matrices and their high intrinsic variability. Thus, the different purposes of BA determination (food safety, production process or food microbiology research) and the most widely employed analytical techniques have been reviewed. - Highlights: • A critical review on analytical methods for BA in fermented beverages is presented. • Recent sample treatments and analytical techniques are described and discussed. • A previous derivatization is needed in most liquid chromatographic methods. • BA determination is related to food safety, production process or microbiology research.

  10. Impacts of land use and land cover changes on biogenic emissions of volatile organic compounds in China from the late 1980s to the mid-2000s: implications for tropospheric ozone and secondary organic aerosol

    Directory of Open Access Journals (Sweden)

    Yu Fu

    2014-11-01

    Full Text Available Based on the MEGAN (Model of Emissions of Gases and Aerosols from Nature module embedded within the global chemical transport model (GEOS-Chem, we estimate the changes in emissions of biogenic volatile organic compounds (BVOCs and their impacts on surface-layer O3 and secondary organic aerosols (SOA in China between the late 1980s and the mid-2000s by using the land cover dataset derived from remote sensing images and land use survey. The land cover change in China from the late 1980s to the mid-2000s can be characterised by an expansion of urban areas (the total urban area in the mid-2000s was four times that in the late 1980s and a reduction in total vegetation coverage by 4%. Regionally, the fractions of land covered by forests exhibited increases in southeastern and northeastern China by 10–30 and 5–15%, respectively, those covered by cropland decreased in most regions except that the farming–pastoral zone in northern China increased by 5–20%, and the factions of grassland in northern China showed a large reduction of 5–30%. With changes in both land cover and meteorological fields, annual BVOC emission in China is estimated to increase by 11.4% in the mid-2000s relative to the late 1980s. With anthropogenic emissions of O3 precursors, aerosol precursors and aerosols fixed at year 2005 levels, the changes in land cover and meteorological parameters from the late 1980s to the mid-2000s are simulated to change the seasonal mean surface-layer O3 concentrations by −4 to +6 ppbv (−10 to +20% and to change the seasonal mean surface-layer SOA concentrations by −0.4 to +0.6 µg m−3 (−20 to +30% over China. We find that the decadal changes in meteorological parameters had larger collective effects on BVOC emissions and surface-layer concentrations of O3 and SOA than those in land cover and land use alone. We also perform a sensitivity simulation to compare the impacts of changes in anthropogenic emissions on concentrations of O3

  11. Selection of Nutrient Used in Biogenic Healing Agent for Cementitious Materials

    NARCIS (Netherlands)

    Tziviloglou, E.; Wiktor, V.A.C.; Jonkers, H.M.; Schlangen, H.E.J.G.

    2017-01-01

    Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the

  12. Compound K, a Ginsenoside Metabolite, Inhibits Colon Cancer Growth via Multiple Pathways Including p53-p21 Interactions

    Directory of Open Access Journals (Sweden)

    Eugene B. Chang

    2013-01-01

    Full Text Available Compound K (20-O-beta-D-glucopyranosyl-20(S-protopanaxadiol, CK, an intestinal bacterial metabolite of ginseng protopanaxadiol saponins, has been shown to inhibit cell growth in a variety of cancers. However, the mechanisms are not completely understood, especially in colorectal cancer (CRC. A xenograft tumor model was used first to examine the anti-CRC effect of CK in vivo. Then, multiple in vitro assays were applied to investigate the anticancer effects of CK including antiproliferation, apoptosis and cell cycle distribution. In addition, a qPCR array and western blot analysis were executed to screen and validate the molecules and pathways involved. We observed that CK significantly inhibited the growth of HCT-116 tumors in an athymic nude mouse xenograft model. CK significantly inhibited the proliferation of human CRC cell lines HCT-116, SW-480, and HT-29 in a dose- and time-dependent manner. We also observed that CK induced cell apoptosis and arrested the cell cycle in the G1 phase in HCT-116 cells. The processes were related to the upregulation of p53/p21, FoxO3a-p27/p15 and Smad3, and downregulation of cdc25A, CDK4/6 and cyclin D1/3. The major regulated targets of CK were cyclin dependent inhibitors, including p21, p27, and p15. These results indicate that CK inhibits transcriptional activation of multiple tumor-promoting pathways in CRC, suggesting that CK could be an active compound in the prevention or treatment of CRC.

  13. Absorption of Visible and Long-wave Radiation by Primary and Secondary Biogenic Aerosols.

    Science.gov (United States)

    Gaffney, J. S.; Marley, N. A.

    2008-12-01

    Field results for the 14C content of carbonaceous aerosols are presented that indicate significant biogenic sources of both primary and secondary aerosols in urban and regional environments. Samples collected in Mexico City and downwind of the urban area during the MILAGRO field study are compared with results reported previously in the literature indicating a significant amount of biogenic aerosols from both biomass burning and secondary photochemical production (e.g. terpene oxidations) are contributing to the overall carbonaceous aerosols in the optically active region of 0.1 to 1.0 micron. Samples in this size range collected on quartz fiber filters were also examined using an integrating sphere and FTIR diffuse reflectance techniques to obtain absorption spectra from 280 to the mid-IR. These data clearly indicate that the biogenic derived primary aerosols from agricultural and trash-burning, as well as secondary organic aerosols from isoprene and terpene oxidations will produce both UV-Visible (short-wave) absorbing substances as well as IR (long-wave) absorbing compounds including humic-like-substances (HULIS). With the anticipated increases in growing seasons (i.e. earlier springs and longer summers) the likely hood of increased fires (forest and grassland) as well as the continuing growth in agricultural burning activities, these primary sources are expected to increase and may play a role in heating of the atmosphere. The compound effects of these primary and secondary biogenic sources of absorbing aerosols to the total aerosol loading and regional climate will be discussed. This work was supported by the Office of Science (BER), U.S. Department of Energy, Grant No. DE-FG02-07ER64328 as part of the Atmospheric Science Program.

  14. Detailed NMR, including 1,1-ADEQUATE, and anticancer studies of compounds from the echinoderm Colobometra perspinosa.

    Science.gov (United States)

    Wright, Anthony D; Nielson, Jonathan L; Tapiolas, Dianne M; Motti, Cherie A; Ovenden, Simon P B; Kearns, Philip S; Liptrot, Catherine H

    2009-11-12

    From the dichloromethane/methanol extract of the crinoid Colobometra perspinosa, collected south east of Richards Island (Bedara), Family Islands, Central Great Barrier Reef, Australia, 3-(1'-hydroxypropyl)-1,6,8-trihydroxy-9,10-anthraquinone [one of the two stereoisomers of rhodoptilometrin, (1)], 3-propyl-1,6,8-trihydroxy-9,10-anthraquinone (3), 2-[(phenylacetyl)amino]ethanesulfonic acid (4), and 4-hydroxybutanoic acid (5) were isolated. Comparison of (1)H- and (13)C-NMR data for rhodoptilometrin (1) with those reported in the literature showed significant differences for some resonances associated with rings A and C. In an attempt to provide accurately assigned (1)H- and (13)C-NMR data, as well as to confirm the structure of 1, a thorough NMR investigation of this compound was undertaken. Measurements included: concentration dependent (13)C, 1D selective NOE, HSQC, HMBC and 1,1-ADEQUATE. The NMR data for 4 and 5 are reported here for the first time, as is their occurrence from the marine environment. The in vitro anticancer activity of the original extract was found to be associated with 1, 3 and 5.

  15. Detailed NMR, Including 1,1-ADEQUATE, and Anticancer Studies of Compounds from the Echinoderm Colobometra perspinosa

    Directory of Open Access Journals (Sweden)

    Catherine H. Liptrot

    2009-11-01

    Full Text Available From the dichloromethane/methanol extract of the crinoid Colobometra perspinosa, collected south east of Richards Island (Bedara, Family Islands, Central Great Barrier Reef, Australia, 3-(1'-hydroxypropyl-1,6,8-trihydroxy-9,10-anthraquinone [one of the two stereoisomers of rhodoptilometrin, (1], 3-propyl-1,6,8-trihydroxy-9,10-anthraquinone (3, 2-[(phenylacetylamino]ethanesulfonic acid (4, and 4-hydroxybutanoic acid (5 were isolated. Comparison of 1H- and 13C-NMR data for rhodoptilometrin (1 with those reported in the literature showed significant differences for some resonances associated with rings A and C. In an attempt to provide accurately assigned 1H- and 13C-NMR data, as well as to confirm the structure of 1, a thorough NMR investigation of this compound was undertaken. Measurements included: concentration dependent 13C, 1D selective NOE, HSQC, HMBC and 1,1-ADEQUATE. The NMR data for 4 and 5 are reported here for the first time, as is their occurrence from the marine environment. The in vitro anticancer activity of the original extract was found to be associated with 1, 3 and 5.

  16. Hydropower's Biogenic Carbon Footprint.

    Science.gov (United States)

    Scherer, Laura; Pfister, Stephan

    2016-01-01

    Global warming is accelerating and the world urgently needs a shift to clean and renewable energy. Hydropower is currently the largest renewable source of electricity, but its contribution to climate change mitigation is not yet fully understood. Hydroelectric reservoirs are a source of biogenic greenhouse gases and in individual cases can reach the same emission rates as thermal power plants. Little is known about the severity of their emissions at the global scale. Here we show that the carbon footprint of hydropower is far higher than previously assumed, with a global average of 173 kg CO2 and 2.95 kg CH4 emitted per MWh of electricity produced. This results in a combined average carbon footprint of 273 kg CO2e/MWh when using the global warming potential over a time horizon of 100 years (GWP100). Nonetheless, this is still below that of fossil energy sources without the use of carbon capture and sequestration technologies. We identified the dams most promising for capturing methane for use as alternative energy source. The spread among the ~1500 hydropower plants analysed in this study is large and highlights the importance of case-by-case examinations.

  17. Hydropower's Biogenic Carbon Footprint.

    Directory of Open Access Journals (Sweden)

    Laura Scherer

    Full Text Available Global warming is accelerating and the world urgently needs a shift to clean and renewable energy. Hydropower is currently the largest renewable source of electricity, but its contribution to climate change mitigation is not yet fully understood. Hydroelectric reservoirs are a source of biogenic greenhouse gases and in individual cases can reach the same emission rates as thermal power plants. Little is known about the severity of their emissions at the global scale. Here we show that the carbon footprint of hydropower is far higher than previously assumed, with a global average of 173 kg CO2 and 2.95 kg CH4 emitted per MWh of electricity produced. This results in a combined average carbon footprint of 273 kg CO2e/MWh when using the global warming potential over a time horizon of 100 years (GWP100. Nonetheless, this is still below that of fossil energy sources without the use of carbon capture and sequestration technologies. We identified the dams most promising for capturing methane for use as alternative energy source. The spread among the ~1500 hydropower plants analysed in this study is large and highlights the importance of case-by-case examinations.

  18. The MUMBA campaign: measurements of urban, marine and biogenic air

    Directory of Open Access Journals (Sweden)

    C. Paton-Walsh

    2017-06-01

    Full Text Available The Measurements of Urban, Marine and Biogenic Air (MUMBA campaign took place in Wollongong, New South Wales (a small coastal city approximately 80 km south of Sydney, Australia from 21 December 2012 to 15 February 2013. Like many Australian cities, Wollongong is surrounded by dense eucalyptus forest, so the urban airshed is heavily influenced by biogenic emissions. Instruments were deployed during MUMBA to measure the gaseous and aerosol composition of the atmosphere with the aim of providing a detailed characterisation of the complex environment of the ocean–forest–urban interface that could be used to test the skill of atmospheric models. The gases measured included ozone, oxides of nitrogen, carbon monoxide, carbon dioxide, methane and many of the most abundant volatile organic compounds. The aerosol characterisation included total particle counts above 3 nm, total cloud condensation nuclei counts, mass concentration, number concentration size distribution, aerosol chemical analyses and elemental analysis.The campaign captured varied meteorological conditions, including two extreme heat events, providing a potentially valuable test for models of future air quality in a warmer climate. There was also an episode when the site sampled clean marine air for many hours, providing a useful additional measure of the background concentrations of these trace gases within this poorly sampled region of the globe. In this paper we describe the campaign, the meteorology and the resulting observations of atmospheric composition in general terms in order to equip the reader with a sufficient understanding of the Wollongong regional influences to use the MUMBA datasets as a case study for testing a chemical transport model. The data are available from PANGAEA (http://doi.pangaea.de/10.1594/PANGAEA.871982.

  19. The MUMBA campaign: measurements of urban, marine and biogenic air

    Science.gov (United States)

    Paton-Walsh, Clare; Guérette, Élise-Andrée; Kubistin, Dagmar; Humphries, Ruhi; Wilson, Stephen R.; Dominick, Doreena; Galbally, Ian; Buchholz, Rebecca; Bhujel, Mahendra; Chambers, Scott; Cheng, Min; Cope, Martin; Davy, Perry; Emmerson, Kathryn; Griffith, David W. T.; Griffiths, Alan; Keywood, Melita; Lawson, Sarah; Molloy, Suzie; Rea, Géraldine; Selleck, Paul; Shi, Xue; Simmons, Jack; Velazco, Voltaire

    2017-06-01

    The Measurements of Urban, Marine and Biogenic Air (MUMBA) campaign took place in Wollongong, New South Wales (a small coastal city approximately 80 km south of Sydney, Australia) from 21 December 2012 to 15 February 2013. Like many Australian cities, Wollongong is surrounded by dense eucalyptus forest, so the urban airshed is heavily influenced by biogenic emissions. Instruments were deployed during MUMBA to measure the gaseous and aerosol composition of the atmosphere with the aim of providing a detailed characterisation of the complex environment of the ocean-forest-urban interface that could be used to test the skill of atmospheric models. The gases measured included ozone, oxides of nitrogen, carbon monoxide, carbon dioxide, methane and many of the most abundant volatile organic compounds. The aerosol characterisation included total particle counts above 3 nm, total cloud condensation nuclei counts, mass concentration, number concentration size distribution, aerosol chemical analyses and elemental analysis.The campaign captured varied meteorological conditions, including two extreme heat events, providing a potentially valuable test for models of future air quality in a warmer climate. There was also an episode when the site sampled clean marine air for many hours, providing a useful additional measure of the background concentrations of these trace gases within this poorly sampled region of the globe. In this paper we describe the campaign, the meteorology and the resulting observations of atmospheric composition in general terms in order to equip the reader with a sufficient understanding of the Wollongong regional influences to use the MUMBA datasets as a case study for testing a chemical transport model. The data are available from PANGAEA (http://doi.pangaea.de/10.1594/PANGAEA.871982).

  20. Cytotoxicity and genotoxicity of biogenic silver nanoparticles

    International Nuclear Information System (INIS)

    Lima, R; Feitosa, L O; Ballottin, D; Tasic, L; Durán, N; Marcato, P D

    2013-01-01

    Biogenic silver nanoparticles with 40.3 ± 3.5 nm size and negative surface charge (− 40 mV) were prepared with Fusarium oxysporum. The cytotoxicity of 3T3 cell and human lymphocyte were studied by a TaliTM image-based cytometer and the genotoxicity through Allium cepa and comet assay. The results of BioAg-w (washed) and BioAg-nw (unwashed) biogenic silver nanoparticles showed cytotoxicity exceeding 50 μg/mL with no significant differences of response in 5 and 10 μg/mL regarding viability. Results of genotoxicity at concentrations 5.0 and 10.0 ug/mL show some response, but at concentrations 0.5 and 1.0 μg/mL the washed and unwashed silver nanoparticles did not present any effect. This in an important result since in tests with different bacteria species and strains, including resistant, MIC (minimal inhibitory concentration) had good answers at concentrations less than 1.9 μg/mL. This work concludes that biogenic silver nanoparticles may be a promising option for antimicrobial use in the range where no cyto or genotoxic effect were observed. Furthermore, human cells were found to have a greater resistance to the toxic effects of silver nanoparticles in comparison with other cells.

  1. Methyl chavicol: characterization of its biogenic emission rate, abundance, and oxidation products in the atmosphere

    Directory of Open Access Journals (Sweden)

    N. C. Bouvier-Brown

    2009-03-01

    Full Text Available We report measurements of ambient atmospheric mixing ratios for methyl chavicol and determine its biogenic emission rate. Methyl chavicol, a biogenic oxygenated aromatic compound, is abundant within and above Blodgett Forest, a ponderosa pine forest in the Sierra Nevada Mountains of California. Methyl chavicol was detected simultaneously by three in-situ instruments – a gas chromatograph with mass spectrometer detector (GC-MS, a proton transfer reaction mass spectrometer (PTR-MS, and a thermal desorption aerosol GC-MS (TAG – and found to be abundant within and above Blodgett Forest. Methyl chavicol atmospheric mixing ratios are strongly correlated with 2-methyl-3-buten-2-ol (MBO, a light- and temperature-dependent biogenic emission from the ponderosa pine trees at Blodgett Forest. Scaling from this correlation, methyl chavicol emissions account for 4–68% of the carbon mass emitted as MBO in the daytime, depending on the season. From this relationship, we estimate a daytime basal emission rate of 0.72–10.2 μgCg−1 h−1, depending on needle age and seasonality. We also present the first observations of its oxidation products (4-methoxybenzaldehyde and 4-methyoxy benzene acetaldehyde in the ambient atmosphere. Methyl chavicol is a major essential oil component of many plant species. This work suggests that methyl chavicol plays a significant role in the atmospheric chemistry of Blodgett Forest, and potentially other sites, and should be included explicitly in both biogenic volatile organic carbon emission and atmospheric chemistry models.

  2. Identification of IAA transport inhibitors including compounds affecting cellular PIN trafficking by two chemical screening approaches using maize coleoptile systems.

    Science.gov (United States)

    Nishimura, Takeshi; Matano, Naoyuki; Morishima, Taichi; Kakinuma, Chieko; Hayashi, Ken-Ichiro; Komano, Teruya; Kubo, Minoru; Hasebe, Mitsuyasu; Kasahara, Hiroyuki; Kamiya, Yuji; Koshiba, Tomokazu

    2012-10-01

    The monocot coleoptile tip region has been generally supposed to be the source of IAA to supply IAA to basal parts by the polar IAA transport system, which results in gravi- and phototropic curvature of coleoptiles. Based on this IAA transport system and gravitropism of maize coleoptiles, we have developed two screening methods to identify small molecules from a large chemical library that inhibit IAA transport. The methods detect molecules that affect (i) gravitropic curvature of coleoptiles; and (ii) the amount of IAA transported from the tip. From 10,000 chemicals, eight compounds were identified and categorized into two groups. Four chemicals in group A decreased IAA transport from the tip, and increased endogenous IAA levels in the tip. The structures of two compounds resembled that of 1-N-naphthylphthalamic acid (NPA), but those of the other two differed from structures of known IAA transport inhibitors. Four chemicals in group B strongly inhibited IAA transport from the tip, but IAA levels at the tip were only slightly affected. At higher concentrations, group B compounds inhibited germination of Arabidopsis, similarly to brefeldin A (BFA). Analysis of the cellular distribution of PIN2-green fluorescent protein (GFP) and PIN1-GFP in Arabidopsis revealed that one of the four chemicals in group B induced internalization of PIN1 and PIN2 proteins into vesicles smaller than BFA bodies, suggesting that this compound affects cellular vesicle trafficking systems related to PIN trafficking. The eight chemicals identified here will be a useful tool for understanding the mechanisms of IAA transport in plants.

  3. Isolation and validated HPTLC analysis of four cytotoxic compounds, including a new sesquiterpene from aerial parts of Plectranthus cylindraceus.

    Science.gov (United States)

    Amina, Musarat; Alam, Perwez; Parvez, Mohammad K; Al-Musayeib, Nawal M; Al-Hwaity, Samerah A; Al-Rashidi, Nada S; Al-Dosari, Mohammed S

    2018-04-01

    We report isolation of a new sesquiterpene (compound 2: plectranol A) along with three known compounds (1: maaliol, 3: penduletin and 4: chrysosplenol D) from the aerial parts of Plectranthus cylindraceus Hoechst. Ex. Benth ethyl acetate extract (PCEAE). Their structures were established by UV, IR, NMR ( 1 H & 13 C), HRESIMS and HSQC methods. The MTT cell proliferation assay of the compounds and the extract performed on human breast, skin and cervical cancer cell lines showed high toxicity, and their IC 50 (μg/mL) values were determined. The validated HPTLC analyses of maaliol and PCEAE (method I) and, penduletin, chrysosplenol D and PCEAE (method II) furnished sharp and compact peaks. The estimated high contents (μg/mg) of maaliol (17.06), penduletin (39.36) and chrysosplenol D (31.66) in PCEAE approved the plant's cytotoxic property. Since, P. cylindraceus contains a variety of cytotoxic terpenoids and flavonoids; our data warrant its further phytochemical and biological characterisation towards developing promising anti-cancer drugs.

  4. USER'S GUIDE TO THE PERSONAL COMPUTER VERSION OF THE BIOGENIC EMISSIONS INVENTORY SYSTEM (PC-BEIS2)

    Science.gov (United States)

    The document is a user's guide for an updated Personal Computer version of the Biogenic Emissions Inventory System (PC-BEIS2), allowing users to estimate hourly emissions of biogenic volatile organic compounds (BVOCs) and soil nitrogen oxide emissions for any county in the contig...

  5. Operation of Marine Diesel Engines on Biogenic Fuels: Modification of Emissions and Resulting Climate Effects

    OpenAIRE

    Petzold, A.; Lauer, P.; Fritsche, U.; Hasselbach, J.; Lichtenstern, M.; Schlager, H.; Fleischer, F.

    2011-01-01

    The modification of emissions of climate-sensitive exhaust compounds such as CO2, NOx, hydrocarbons, and particulate matter from medium-speed marine diesel engines was studied for a set of fossil and biogenic fuels. Applied fossil fuels were the reference heavy fuel oil (HFO) and the low-sulfur marine gas oil (MGO); biogenic fuels were palm oil, soybean oil, sunflower oil, and animal fat. Greenhouse gas (GHG) emissions related to the production of biogenic fuels were treated by means of a fue...

  6. Antimicrobial (including antimollicutes, antioxidant and anticholinesterase activities of Brazilian and Spanish marine organisms – evaluation of extracts and pure compounds

    Directory of Open Access Journals (Sweden)

    Éverson Miguel Bianco

    Full Text Available Abstract This work describes the antimicrobial, antioxidant and anticholinesterase activities in vitro of organic extracts from fourteen seaweeds, eleven sponges, two ascidians, one bryozoan, and one sea anemone species collected along the Brazilian and Spanish coast, as well as the isolation of the diterpene (4R, 9S, 14S-4α-acetoxy-9β,14α-dihydroxydolast-1(15,7-diene (1 and halogenated sesquiterpene elatol (2. The most promising antimicrobial results for cell wall bacteria were obtained by extracts from seaweeds Laurencia dendroidea and Sargassum vulgare var. nanun (MIC 250 μg/ml, and by the bryozoan Bugula neritina (MIC 62.5 μg/ml, both against Staphylococcus aureus. As for antimollicutes, extracts from seaweeds showed results better than the extracts from invertebrates. Almost all seaweeds assayed (92% exhibited some antimicrobial activity against mollicutes strains (Mycoplasma hominis,Mycoplasma genitalium,Mycoplasma capricolum and Mycoplasma pneumoniae strain FH. From these seaweeds, A1 (Canistrocarpus cervicornis, A11 (Gracilaria sp. and A4 (Lobophora variegata showed the best results for M. pneumoniae strain FH (MIC 250 μg/ml. Furthermore, compounds 1 and 2 were also assayed against mollicutes strains M. hominis,M. genitalium,M. capricolum,M. pneumoniae strain 129 and M. pneumoniae strain FH, which showed MIC > 100 μg/ml. Antioxidant activities of extracts from these marine organisms were inactive, except for E7 (from sponge Ircinia sp., which exhibited moderated antioxidant activities for two methods assayed (IC50 83.0 ± 0.1 μg/ml, and 52.0 ± 0.8 mg AA/g, respectively. Finally, for the anticholinesterase activity, all the 29 samples evaluated (100% exhibited some level of activity, with IC50 < 1000 μg/ml. From these, seaweeds extracts were considered more promising than marine invertebrate extracts [A10 (IC50 14.4 ± 0.1 μg/ml, A16 (IC50 16.4 ± 0.4 μg/ml and A8 (IC50 14.9 ± 0.5 μg/ml]. The findings of this work are useful

  7. Constraining biogenic silica dissolution in marine sediments: a comparison between diagenetic models and experimental dissolution rates

    NARCIS (Netherlands)

    Khalil, K.; Rabouille, C.; Gallinari, M.; Soetaert, K.E.R.; DeMaster, D.J.; Ragueneau, O.

    2007-01-01

    The processes controlling preservation and recycling of particulate biogenic silica in sediments must be understood in order to calculate oceanic silica mass balances. The new contribution of this work is the coupled use of advanced models including reprecipitation and different phases of biogenic

  8. Comparison of Toxicities of Metal Pyrithiones Including Their Degradation Compounds and Organotin Antifouling Biocides to the Japanese Killifish Oryzias latipes.

    Science.gov (United States)

    Ohji, Madoka; Harino, Hiroya

    2017-08-01

    Japanese killifish Oryzias latipes were exposed to three levels (0, 1, and 10 µg l -1 ) of copper pyrithione (CuPT 2 ), zinc pyrithione (ZnPT 2 ), six of their degradation products, and the organotin compounds tributyltin (TBT) and triphenyltin (TPT) for 48 h at 20 °C. All individual fish exposed to 1 and 10 µg l -1 of CuPT 2 or 10 µg l -1 of ZnPT 2 were dead within 12 h, respectively, and at 24 h the survival rate of the fish exposed to 1 µg l -1 of ZnPT 2 was 50%. All fish exposed to 10 µg l -1 of ZnPT 2 showed morphological abnormalities in the form of vertebral deformity. None of the fish exposed to six of the degradation products of PTs, TBT, and TPT died during a 48-h exposure period, but various biological effects were observed in the fish exposed to these chemicals: abnormalities of respiration and swimming behavior, and decreased hatchability. Our findings suggest that O. latipes has a higher ecological risk of CuPT 2 and ZnPT 2 exposure than of TBT and TPT exposure during their life history. Because these antifouling biocides have been used in both freshwater and marine environments, our results highlight these biocides' deleterious effects on the freshwater fish as well as marine fish, and they indicate freshwater and marine pollution.

  9. Influence of biogenic gas production on coalbed methane recovery index

    Directory of Open Access Journals (Sweden)

    Hongyu Guo

    2017-05-01

    Full Text Available In investigating the effect of biogenic gas production on the recovery of coalbed methane (CBM, coal samples spanning different ranks were applied in the microbial-functioned simulation experiments for biogenic methane production. Based on the biogenic methane yield, testing of pore structures, and the isothermal adsorption data of coals used before and after the simulation experiments, several key parameters related to the recovery of CBM, including recovery rate, gas saturation and ratio of critical desorption pressure to reservoir pressure, etc., were calculated and the corresponding variations were further analyzed. The results show that one of the significant functions of microbial communities on coal is possibly to weaken its affinity for methane gas, especially with the advance of coal ranks; and that by enhancing the pore system of coal, which can be evidenced by the increase of porosity and permeability, the samples collected from Qianqiu (Yima in Henan and Shaqu (Liulin in Shanxi coal mines all see a notable increase in the critical desorption pressure, gas saturation and recovery rate, as compared to the moderate changes of that of Guandi (Xishan in Shanxi coal sample. It is concluded that the significance of enhanced biogenic gas is not only in the increase of CBM resources and the improvement of CBM recoverability, but in serving as an engineering reference for domestic coalbed biogenic gas production.

  10. Volatile organic compound emmission rates from mixed deciduous and coniferous foest in Northern Wisconsin, USA

    Science.gov (United States)

    J. G. Isebrands; A. B. Guenther; P. Harley; D. Helmig; L. Klinger; L. Vierling; P. Zimmerman; C. Geron

    1999-01-01

    Biogenic emissions of volatile organic compounds {VOC) from forests play an important role in regulating the atmospheric trace gas composition including global tropospheric ozone concentrations. However, more information is needed on VOC emission rates from different forest regions of the world to understand regional and global impacts and to implement possible...

  11. Do airborne biogenic chemicals interact with the PI3K/Akt/mTOR cell signalling pathway to benefit human health and wellbeing in rural and coastal environments?

    Science.gov (United States)

    Moore, Michael N

    2015-07-01

    Living and taking recreation in rural and coastal environments promote health and wellbeing, although the causal factors involved are unclear. It has been proposed that such environments provide a counter to the stresses of everyday living, leading to enhanced mental and physical health. Living in natural environments will result in airborne exposure to a wide range of biogenic chemicals through inhalation and ingestion of airborne microbiota and particles. The "biogenics" hypothesis formulated here is that regular exposure to low concentrations of mixtures of natural compounds and toxins in natural environments confers pleiotropic health benefits by inhibiting the activities of interconnected cell signalling systems, particularly PI3K/Akt/mTORC1. When overactive, Akt and mTOR (mTORC1) can lead to many pathological processes including cancers, diabetes, inflammation, immunosuppression, and neurodegenerative diseases. There is a substantial body of evidence that many natural products (i.e., from bacteria, algae, fungi and higher plants) inhibit the activities of these protein kinases. Other mTOR-related interconnected metabolic control "switches" (e.g., PTEN & NF-κB), autophagy and other cytoprotective processes are also affected by natural products. The "biogenics" hypothesis formulated here is that regular intermittent exposure to a mixture of airborne biogenic compounds in natural environments confers pleiotropic health benefits by inhibiting activities of the highly interconnected PI3K/Akt/mTORC1 system. It is proposed that future experimental exposures to biogenic aerosols in animal models coupled with epidemiology, should target the activities of the various kinases in the PI3K/Akt/mTORC1 systems and related physiological processes for selected urban, rural and coastal populations in order to test this hypothesis. Copyright © 2015 Elsevier Inc. All rights reserved.

  12. Fermented functional foods based on probiotics and their biogenic metabolites.

    Science.gov (United States)

    Stanton, Catherine; Ross, R Paul; Fitzgerald, Gerald F; Van Sinderen, Douwe

    2005-04-01

    The claimed health benefits of fermented functional foods are expressed either directly through the interaction of ingested live microorganisms, bacteria or yeast with the host (probiotic effect) or indirectly as a result of ingestion of microbial metabolites produced during the fermentation process (biogenic effect). Although still far from fully understood, several probiotic mechanisms of action have been proposed, including competitive exclusion, competition for nutrients and/or stimulation of an immune response. The biogenic properties of fermented functional foods result from the microbial production of bioactive metabolites such as certain vitamins, bioactive peptides, organic acids or fatty acids during fermentation.

  13. Biogenic Amines in Insect Antennae

    Directory of Open Access Journals (Sweden)

    Marianna I. Zhukovskaya

    2017-06-01

    Full Text Available Insect antenna is a multisensory organ, each modality of which can be modulated by biogenic amines. Octopamine (OA and its metabolic precursor tyramine (TA affect activity of antennal olfactory receptor neurons. There is some evidence that dopamine (DA modulates gustatory neurons. Serotonin can serve as a neurotransmitter in some afferent mechanosensory neurons and both as a neurotransmitter and neurohormone in efferent fibers targeted at the antennal vessel and mechanosensory organs. As a neurohormone, serotonin affects the generation of the transepithelial potential by sensillar accessory cells. Other possible targets of biogenic amines in insect antennae are hygro- and thermosensory neurons and epithelial cells. We suggest that the insect antenna is partially autonomous in the sense that biologically active substances entering its hemolymph may exert their effects and be cleared from this compartment without affecting other body parts.

  14. PTR-MS in environmental research: biogenic VOCs

    International Nuclear Information System (INIS)

    Beauchamp, J.; Grabmer, W.; Graus, M.; Wisthaler, A.; Hansel, A.

    2004-01-01

    Proton-transfer-reaction mass spectrometry (PTR-MS) is a chemical ionization mass spectrometry technique that allows for on-line measurements of volatile organic compounds (VOCs) at pptV levels. This well established analytical tool has been used in a broad variety of research, including the investigation of VOCs in various foods (e.g. for quality control or food degradation studies), as well as being used as a tool for non-invasive medical diagnostics (e.g. human breath analysis). In addition to these fields of study, PTR-MS has been widely used in environmental research, from trace gas analysis in the troposphere to VOC emissions from plants. Participation in two field campaigns (BEWA and ECHO - both part of the German AFO 2000 program) by the Institute of Ion Physics involved a variety of investigations for monitoring biogenic emissions. These included the technique of disjunct eddy covariance for flux measurements above a forest canopy, C-13 carbon labelling experiments to follow carbon use in a plant, and stress-induced VOC emission investigations to gain understanding of how plants react to stress (e.g. ozone exposure). A selection of results from these investigations will be discussed in this presentation. (author)

  15. Non-enzymatic U(VI) interactions with biogenic mackinawite

    Science.gov (United States)

    Veeramani, H.; Qafoku, N. P.; Kukkadapu, R. K.; Murayama, M.; Hochella, M. F.

    2011-12-01

    Reductive immobilization of hexavalent uranium [U(VI)] by stimulation of dissimilatory metal and/or sulfate reducing bacteria (DMRB or DSRB) has been extensively researched as a remediation strategy for subsurface U(VI) contamination. These bacteria derive energy by reducing oxidized metals as terminal electron acceptors, often utilizing organic substrates as electron donors. Thus, when evaluating the potential for in-situ uranium remediation in heterogeneous subsurface media, it is important to understand how the presence of alternative electron acceptors such as Fe(III) and sulfate affect U(VI) remediation and the long term behavior and reactivity of reduced uranium. Iron, an abundant subsurface element, represents a substantial sink for electrons from DMRB, and the reduction of Fe(III) leads to the formation of dissolved Fe(II) or to reactive biogenic Fe(II)- and mixed Fe(II)/Fe(III)- mineral phases. Consequently, abiotic U(VI) reduction by reactive forms of biogenic Fe(II) minerals could be a potentially important process for uranium immobilization. In our study, the DMRB Shewanella putrefaciens CN32 was used to synthesize a biogenic Fe(II)-bearing sulfide mineral: mackinawite, that has been characterized by XRD, SEM, HRTEM and Mössbauer spectroscopy. Batch experiments involving treated biogenic mackinawite and uranium (50:1 molar ratio) were carried out at room temperature under strict anoxic conditions. Following complete removal of uranium from solution, the biogenic mackinawite was analyzed by a suite of analytical techniques including XAS, HRTEM and Mössbauer spectroscopy to determine the speciation of uranium and investigate concomitant Fe(II)-phase transformation. Determining the speciation of uranium is critical to success of a remediation strategy. The present work elucidates non-enzymatic/abiotic molecular scale redox interactions between biogenic mackinawite and uranium.

  16. incidence of biogenic amines in foods implications for the gambia

    African Journals Online (AJOL)

    Temechegn

    Health-wise biogenic amines play positive roles and ... BAs include, fish, fish products, meat products, eggs, cheeses, fermented vegetables, soybean ... The amount of. BAs present in foods, fruits and vegetables provides an index for measuring food quality [3]. In the tropics fish are caught in temperatures more than 200C.

  17. Biogenic emissions of isoprenoids and NO in China and comparison to anthropogenic emissions

    International Nuclear Information System (INIS)

    Tie Xuexi; Li Guohui; Ying, Zhuming; Guenther, Alex; Madronich, Sasha

    2006-01-01

    In this study, a regional dynamical model (WRF) is used to drive biogenic emission models to calculate high resolution (10 x 10 km) biogenic emissions of isoprene (C 5 H 8 ), monoterpenes (C 1 H 16 ), and nitric oxide (NO) in China. This high resolution biogenic inventory will be available for the community to study the effect of biogenic emissions on photochemical oxidants in China. The biogenic emissions are compared to anthropogenic emissions to gain insight on the potential impact of the biogenic emissions on tropospheric chemistry, especially ozone production in this region. The results show that the biogenic emissions in China exhibit strongly diurnal, seasonal, and spatial variations. The isoprenoid (including both isoprene and monoterpenes) emissions are closely correlated to tree density and strongly vary with season and local time. During winter (January), the biogenic isoprenoid emissions are the lowest, resulting from lower temperature and solar radiation, and highest in summer (July) due to higher temperature and solar radiation. The biogenic NO emissions are also higher during summer and lower during winter, but the magnitude of the seasonal variation is smaller than the emissions of isoprene and monoterpenes. The biogenic emissions of NO are widely spread out in the northern, eastern, and southern China regions, where high-density agricultural soil lands are located. Both biogenic NO and isoprenoid emissions are very small in western China. The calculated total biogenic emission budget is smaller than the total anthropogenic VOC emission budget in China. The biogenic isoprenoid and anthropogenic VOC emissions are 10.9 and 15.1 Tg year -1 , respectively. The total biogenic and anthropogenic emissions of NO are 5.9 and 11.5 Tg(NO) year -1 , respectively. The study shows that in central eastern China, the estimated biogenic emissions of isoprenoids are very small, and the anthropogenic emissions of VOCs are dominant in this region. However, in

  18. Biogenic emissions of isoprenoids and NO in China and comparison to anthropogenic emissions.

    Science.gov (United States)

    Tie, Xuexi; Li, Guohui; Ying, Zhuming; Guenther, Alex; Madronich, Sasha

    2006-12-01

    In this study, a regional dynamical model (WRF) is used to drive biogenic emission models to calculate high resolution (10x10 km) biogenic emissions of isoprene (C(5)H(8)), monoterpenes (C(10)H(16)), and nitric oxide (NO) in China. This high resolution biogenic inventory will be available for the community to study the effect of biogenic emissions on photochemical oxidants in China. The biogenic emissions are compared to anthropogenic emissions to gain insight on the potential impact of the biogenic emissions on tropospheric chemistry, especially ozone production in this region. The results show that the biogenic emissions in China exhibit strongly diurnal, seasonal, and spatial variations. The isoprenoid (including both isoprene and monoterpenes) emissions are closely correlated to tree density and strongly vary with season and local time. During winter (January), the biogenic isoprenoid emissions are the lowest, resulting from lower temperature and solar radiation, and highest in summer (July) due to higher temperature and solar radiation. The biogenic NO emissions are also higher during summer and lower during winter, but the magnitude of the seasonal variation is smaller than the emissions of isoprene and monoterpenes. The biogenic emissions of NO are widely spread out in the northern, eastern, and southern China regions, where high-density agricultural soil lands are located. Both biogenic NO and isoprenoid emissions are very small in western China. The calculated total biogenic emission budget is smaller than the total anthropogenic VOC emission budget in China. The biogenic isoprenoid and anthropogenic VOC emissions are 10.9 and 15.1 Tg year(-1), respectively. The total biogenic and anthropogenic emissions of NO are 5.9 and 11.5 Tg(NO) year(-1), respectively. The study shows that in central eastern China, the estimated biogenic emissions of isoprenoids are very small, and the anthropogenic emissions of VOCs are dominant in this region. However, in

  19. Impacts of biogenic emissions of VOC and NOx on tropospheric ozone during summertime in eastern China.

    Science.gov (United States)

    Wang, Qin'geng; Han, Zhiwei; Wang, Tijian; Zhang, Renjian

    2008-05-20

    This study is intended to understand and quantify the impacts of biogenic emissions of volatile organic compounds (VOC) and nitrogen oxides (NO(x)) on the formation of tropospheric ozone during summertime in eastern China. The model system consists of the non-hydrostatic mesoscale meteorological model (MM5) and a tropospheric chemical and transport model (TCTM) with the updated carbon-bond chemical reaction mechanism (CBM-IV). The spatial resolution of the system domain is 30 km x 30 km. The impacts of biogenic emissions are investigated by performing simulations (36 h) with and without biogenic emissions, while anthropogenic emissions are constant. The results indicate that biogenic emissions have remarkable impacts on surface ozone in eastern China. In big cities and their surrounding areas, surface ozone formation tends to be VOC-limited. The increase in ozone concentration by biogenic VOC is generally 5 ppbv or less, but could be more than 10 ppbv or even 30 ppbv in some local places. The impacts of biogenic NO(x) are different or even contrary in different regions, depending on the relative availability of NO(x) and VOC. The surface ozone concentrations reduced or increased by the biogenic NO(x) could be as much as 10 ppbv or 20 ppbv, respectively. The impacts of biogenic emissions on ozone aloft are generally restricted to the boundary layer and generally more obvious during the daytime than during the nighttime. This study is useful for understanding the role of biogenic emissions and for planning strategies for surface ozone abatement in eastern China. Due to limitations of the emission inventories used and the highly non-linear nature of zone formation, however, some uncertainties remain in the results.

  20. Formation of secondary organic aerosols from biogenic precursors: A case study over an Isoprene emitting forest.

    Science.gov (United States)

    Freney, Evelyn; Sellegri, Karine; Borbon, Agnès; Colomb, Aurelie; Delon, Claire; Jambert, Corinne; Durand, Pierre; Bourianne, Thierry; Gaimoz, Cecile; Feron, Anais; Triquette, Sylvain; Beekmann, Matthias; Sartelet, Karine; Dulcac, Francois

    2015-04-01

    Characterising the sources and formation patterns of atmospheric aerosols is fundamental to understanding the impact of anthropogenic emissions on the composition and physical properties of the atmosphere. Although, the contribution of urban anthropogenic aerosol particles is important (10 Tg C yr-1), the contribution of biogenic aerosols has been estimated to be as much as 90 Tg C yr-1 (Hallquist et al., 2009.). This large difference highlights the importance of understanding the formation mechanisms and sources of the biogenic aerosol in the atmosphere. An increasing number of studies have shown that the submicron aerosol mass concentration is dominated by organic aerosols in both rural and urban environments. In addition, there have been several studies showing that the combined emissions of both biogenic and anthropogenic VOC emissions can result in a higher yield of secondary organic aerosol (SOA) formation. Biogenic SOA is formed from the oxidation of biogenic volatile organic compounds that are emitted naturally from terrestrial vegetation. The most commonly emitted BVOCs include isoprene and monoterpenes (Kesslmeier and Staudt, 1999, Arneth et al., 2008). Despite their importance, the characterisation of BSOA from laboratory and field experiments is still poor and it is only recently that advances in measurement techniques providing more detailed analysis of these species is being provided. One of the reasons for the difficulty in characterising the abundance of these species, is their high temporal and spatial scales. As part of the ChArMEx (the Chemistry-Aerosol Mediterranean Experiment, http://charmex.lsce.ipsl.fr) experiment (SOP2a/SAFMED+) in July 2014, a number of research flights were performed over two forested areas in the south of France. These forested areas had different characteristics where one has mainly isoprene emitting vegetation, and the other is known to have more monoterpene emitting vegetation. The aims of these research flights were

  1. Biogenic volatile emissions from the soil.

    Science.gov (United States)

    Peñuelas, J; Asensio, D; Tholl, D; Wenke, K; Rosenkranz, M; Piechulla, B; Schnitzler, J P

    2014-08-01

    Volatile compounds are usually associated with an appearance/presence in the atmosphere. Recent advances, however, indicated that the soil is a huge reservoir and source of biogenic volatile organic compounds (bVOCs), which are formed from decomposing litter and dead organic material or are synthesized by underground living organism or organs and tissues of plants. This review summarizes the scarce available data on the exchange of VOCs between soil and atmosphere and the features of the soil and particle structure allowing diffusion of volatiles in the soil, which is the prerequisite for biological VOC-based interactions. In fact, soil may function either as a sink or as a source of bVOCs. Soil VOC emissions to the atmosphere are often 1-2 (0-3) orders of magnitude lower than those from aboveground vegetation. Microorganisms and the plant root system are the major sources for bVOCs. The current methodology to detect belowground volatiles is described as well as the metabolic capabilities resulting in the wealth of microbial and root VOC emissions. Furthermore, VOC profiles are discussed as non-destructive fingerprints for the detection of organisms. In the last chapter, belowground volatile-based bi- and multi-trophic interactions between microorganisms, plants and invertebrates in the soil are discussed. © 2014 John Wiley & Sons Ltd.

  2. Molecular markers of biomass burning, fungal spores and biogenic SOA in the Taklimakan desert aerosols

    Science.gov (United States)

    Fu, Pingqing; Zhuang, Guoshun; Sun, Yele; Wang, Qiongzhen; Chen, Jing; Ren, Lujie; Yang, Fan; Wang, Zifa; Pan, Xiaole; Li, Xiangdong; Kawamura, Kimitaka

    2016-04-01

    Biogenic primary organic aerosols (POA) and secondary organic aerosols (SOA) are important organic constituents of atmospheric particulate matter (PM). In order to better understand the atmospheric abundances, molecular compositions and sources of the desert aerosols, biomass-burning tracers (e.g. levoglucosan), primary saccharides including fungal spore tracers, and SOA tracers from the oxidation of biogenic volatile organic compounds (e.g. isoprene, monoterpenes and sesquiterpene) have been studied in ambient aerosols from the Taklimakan desert, using gas chromatography-mass spectrometry. Results showed that the total concentrations of biomass-burning tracers at Hetian (177-359 ng m-3, mean 233 ng m-3 in PM2.5) in the south rim of the desert were much higher than those at Tazhong (1.9-8.8 ng m-3 in PM2.5 and 5.9-32 ng m-3 in TSP) in the central Taklimakan desert. Molecular markers of fungal spores were also detected in all the desert aerosols, highlighting the importance of primary bioaerosols in the Asian dust particles. A specific pattern of the dominance of 2-methylglyceric acid over 2-methyltetrols and C5-alkene triols was found in the Taklimakan desert aerosols, especially during the dust storm events, which is different from the 2-methyltetrols-dominated pattern in other ambient aerosols. Our results provide direct evidence on the biogenic POA and SOA tracers in the Taklimakan desert region, which help to better understand their impact on the aerosol chemistry in the down-wind regions.

  3. Forensic source differentiation of petrogenic, pyrogenic, and biogenic hydrocarbons in Canadian oil sands environmental samples.

    Science.gov (United States)

    Wang, Zhendi; Yang, C; Parrott, J L; Frank, R A; Yang, Z; Brown, C E; Hollebone, B P; Landriault, M; Fieldhouse, B; Liu, Y; Zhang, G; Hewitt, L M

    2014-04-30

    To facilitate monitoring efforts, a forensic chemical fingerprinting methodology has been applied to characterize and differentiate pyrogenic (combustion derived) and biogenic (organism derived) hydrocarbons from petrogenic (petroleum derived) hydrocarbons in environmental samples from the Canadian oil sands region. Between 2009 and 2012, hundreds of oil sands environmental samples including water (snowmelt water, river water, and tailings pond water) and sediments (from river beds and tailings ponds) have been analyzed. These samples were taken from sites where assessments of wild fish health, invertebrate communities, toxicology and detailed chemistry are being conducted as part of the Canada-Alberta Joint Oil Sands Monitoring Plan (JOSMP). This study describes the distribution patterns and potential sources of PAHs from these integrated JOSMP study sites, and findings will be linked to responses in laboratory bioassays and in wild organisms collected from these same sites. It was determined that hydrocarbons in Athabasca River sediments and waters were most likely from four sources: (1) petrogenic heavy oil sands bitumen; (2) biogenic compounds; (3) petrogenic hydrocarbons of other lighter fuel oils; and (4) pyrogenic PAHs. PAHs and biomarkers detected in snowmelt water samples collected near mining operations imply that these materials are derived from oil sands particulates (from open pit mines, stacks and coke piles). Crown Copyright © 2014. Published by Elsevier B.V. All rights reserved.

  4. Sub-Antarctic marine aerosol: dominant contributions from biogenic sources

    Directory of Open Access Journals (Sweden)

    J. Schmale

    2013-09-01

    Full Text Available Biogenic influences on the composition and characteristics of aerosol were investigated on Bird Island (54°00' S, 38°03' W in the South Atlantic during November and December 2010. This remote marine environment is characterised by large seabird and seal colonies. The chemical composition of the submicron particles, measured by an aerosol mass spectrometer (AMS, was 21% non-sea-salt sulfate, 2% nitrate, 8% ammonium, 22% organics and 47% sea salt including sea salt sulfate. A new method to isolate the sea spray signature from the high-resolution AMS data was applied. Generally, the aerosol was found to be less acidic than in other marine environments due to the high availability of ammonia, from local fauna emissions. By positive matrix factorisation five different organic aerosol (OA profiles could be isolated: an amino acid/amine factor (AA-OA, 18% of OA mass, a methanesulfonic acid OA factor (MSA-OA, 25%, a marine oxygenated OA factor (M-OOA, 41%, a sea spray OA fraction (SS-OA, 7% and locally produced hydrocarbon-like OA (HOA, 9%. The AA-OA was dominant during the first two weeks of November and found to be related with the hatching of penguins in a nearby colony. This factor, rich in nitrogen (N : C ratio = 0.13, has implications for the biogeochemical cycling of nitrogen in the area as particulate matter is often transported over longer distances than gaseous N-rich compounds. The MSA-OA was mainly transported from more southerly latitudes where phytoplankton bloomed. The bloom was identified as one of three sources for particulate sulfate on Bird Island, next to sea salt sulfate and sulfate transported from South America. M-OOA was the dominant organic factor and found to be similar to marine OA observed at Mace Head, Ireland. An additional OA factor highly correlated with sea spray aerosol was identified (SS-OA. However, based on the available data the type of mixture, internal or external, could not be determined. Potassium was not

  5. Intolerance to dietary biogenic amines : a review

    NARCIS (Netherlands)

    Jansen, SC; van Dusseldorp, M; Bottema, KC; Dubois, AEJ

    Objective: To evaluate the scientific evidence for purported intolerance to dietary biogenic amines. Data Sources: MEDLINE was searched for articles in the English language published between January 1966 and August 2001. The keyword biogenic amin* was combined with hypersens*, allergen intoler*, and

  6. Intolerance to dietary biogenic amines: A review

    NARCIS (Netherlands)

    Jansen, S.C.; Dusseldorp, M. van; Bottema, K.C.; Dubois, A.E.J.

    2003-01-01

    Objective: To evaluate the scientific evidence for purported intolerance to dietary biogenic amines. Data Sources: MEDLINE was searched for articles in the English language published between January 1966 and August 2001. The keyword biogenic amin* was combined with hypersens*, allerg*, intoler*, and

  7. Mineralization of Bacteria in Terrestrial Basaltic Rocks: Comparison With Possible Biogenic Features in Martian Meteorite Allan Hills 84001

    Science.gov (United States)

    Thomas-Keprta, K. L.; McKay, D. S.; Wentworth, S. J.; Stevens, T. O.; Taunton, A. E.; Allen, C. C.; Gibson, E. K., Jr.; Romanek, C. S.

    1998-01-01

    The identification of biogenic features altered by diagenesis or mineralization is important in determining whether specific features in terrestrial rocks and in meteorites may have a biogenic origin. Unfortunately, few studies have addressed the formation of biogenic features in igneous rocks, which may be important to these phenomena, including the controversy over possible biogenic features in basaltic martian meteorite ALH84001. To explore the presence of biogenic features in igneous rocks, we examined microcosms growing in basaltic small-scale experimental growth chambers or microcosms. Microbial communities were harvested from aquifers of the Columbia River Basalt (CRB) group and grown in a microcosm containing unweathered basalt chips and groundwater (technique described in. These microcosms simulated natural growth conditions in the deep subsurface of the CRB, which should be a good terrestrial analog for any putative martian subsurface ecosystem that may have once included ALH84001. Here we present new size measurements and photomicrographs comparing the putative martian fossils to biogenic material in the CRB microcosms. The range of size and shapes of the biogenic features on the CRB microcosm chips overlaps with and is similar to those on ALH84001 chips. Although this present work does not provide evidence for the biogenicity of ALH84001 features, we believe that, based on criteria of size, shape, and general morphology, a biogenic interpretation for the ALH84001 features remains plausible.

  8. Managing Your Wine Fermentation to Reduce the Risk of Biogenic Amine Formation

    Science.gov (United States)

    Smit, Anita Yolandi; Engelbrecht, Lynn; du Toit, Maret

    2012-01-01

    Biogenic amines are nitrogenous organic compounds produced in wine from amino acid precursors mainly by microbial decarboxylation. The concentration of biogenic amines that can potentially be produced is dependent on the amount of amino acid precursors in the medium, the presence of decarboxylase positive microorganisms and conditions that enable microbial or biochemical activity such as the addition of nutrients to support the inoculated starter cultures for alcoholic and malolactic fermentation (MLF). MLF can be conducted using co-inoculation or an inoculation after the completion of alcoholic fermentation that may also affect the level of biogenic amines in wine. This study focused on the impact of the addition of complex commercial yeast and bacterial nutrients and the use of different MLF inoculation scenarios on the production of biogenic amines in wine. Results showed that the addition of complex nutrients to real grape must could potentially increase histamine concentrations in wine. The same experiment in synthetic grape must showed a similar trend for putrescine and cadaverine. The effect of different MLF inoculation scenarios was examined in two cultivars, Pinotage and Shiraz. Conflicting results was obtained. In the Shiraz, co-inoculation resulted in lower biogenic amine concentrations after MLF compared to before MLF, while the concentration was higher in the Pinotage. However, the production of biogenic amines was affected more by the presence of decarboxylase positive lactic acid bacteria than by the addition of complex nutrients or the inoculation scenario. PMID:22419915

  9. Biogenic and non-biogenic Si pools in terrestrial ecosystems: results from a novel analysis method

    Science.gov (United States)

    Barao, Lucia; Vandevenne, Floor; Clymans, Wim; Meire, Patrick; Frings, Patrick; Conley, Daniel; Struyf, Eric

    2015-04-01

    Silicon (Si) is a chemical element frequently associated with highly abundant silicate minerals in the Earth crust. Over millions of years, the interaction of such minerals with the atmosphere and hydrosphere produces a myriad of processed compounds, and the mineral weathering consumes CO2 during the process. The weathering of minerals also triggers the export of dissolved Si (DSi) to coastal waters and the ocean. Here, DSi is deposited in diatom frustules, in an amorphous biogenic form (BSi). Diatoms account for 50% of the primary production and are crucial for the export of carbon into the deep sea. In recent years, it was acknowledged that terrestrial systems filter the Si transition from the terrestrial mineral to the marine and coastal biological pool, by the incorporation of DSi into plants. In this process, DSi is taken up by roots together with other nutrients and precipitates in plant cells in amorphous structures named phytoliths. After dead, plant tissues become mixed in the top soil, where BSi is available for dissolution and will control the DSi availability in short time scales. Additionally, Si originated from soil forming processes can also significantly interfere with the global cycle. The Si cycle in terrestrial ecosystems is a key factor to coastal ecology, plant ecology, biogeochemistry and agro-sciences, but the high variability of different biogenic and non-biogenic Si pools remains as an obstacle to obtain accurate measurements. The traditional methods, developed to isolate diatoms in ocean sediments, only account for simple mineral corrections. In this dissertation we have adapted a novel continuous analysis method (during alkaline extraction) that uses Si-Al ratios and reactivity to differ biogenic from non-biogenic fractions. The method was originally used in marine sediments, but we have developed it to be applicable in a wide range of terrestrial, aquatic and coastal ecosystems. We first focused on soils under strong human impact in

  10. Ozone and secondary organic aerosol production by interaction between and organophosphorous pesticide and biogenic VOCs mixture

    Science.gov (United States)

    Borrás, Esther; Ródenas, Mila; Vera, Teresa; Muñoz, Amalia

    2017-04-01

    characterization of degradation products were done by using different off-line analysis with SPME, C18 cartridges and filters plus derivatization and subsequent analysis by GCMS. The results show that the combination of pesticide and biogenic compounds increase the SOA and O3 formation, being, in combination, high contributors to photochemical smog. This study contributes providing useful data about atmospheric degradation processes of pesticides. Knowledge of the specific degradation products, including the formation of secondary particulate matter and ozone, could complete the assessment of their potential impact. The understanding of atmospheric reactions should help to estimate the expected formation of gas and/or particulate products in the troposphere for each pesticide. Hence, these results can contribute to the selection of environmentally sustainable strategies against plagues. Acknowledgements The authors wish to thank the EUPHORE staff. Ministerio de Economía y Competitividad for IMPLACAVELES (CGL2013-49093-C2-1-R) and Generalitat Valenciana for the DESESTRES- Prometeo II project are acknowledged. Fundación CEAM is partly supported by Generalitat Valenciana - Spain. References [1] R. Atkinson, et al. Water, Air and Soil Pollution 115, 219-243 (1999).

  11. Contribution of biogenic emissions to the formation of ozone and particulate matter in the eastern United States.

    Science.gov (United States)

    Pun, Betty K; Wu, Shiang-Yuh; Seigneur, Christian

    2002-08-15

    As anthropogenic emissions of ozone (O3) precursors, fine particulate matter (PM2.5), and PM2.5 precursors continue to decrease in the United States, the fraction of O3 and PM2.5 attributable to natural sources may become significant in some locations, reducing the efficacy that can be expected from future controls of anthropogenic sources. Modeling studies were conducted to estimate the contribution of biogenic emissions to the formation of O3 and PM2.5 in Nashville/TN and the northeastern United States. Two approaches were used to bound the estimates. In an anthropogenic simulation, biogenic emissions and their influence at the domain boundaries were eliminated. Contributions of biogenic compounds to the simulated concentrations of O3 and PM2.5 were determined by the deviation of the concentrations in the anthropogenic case from those in the base case. A biogenic simulation was used to assess the amounts of O3 and PM2.5 produced in an environment free from anthropogenic influences in emissions and boundary conditions. In both locations, the contribution of biogenic emissions to O3 was small (biogenic volatile organic compounds (VOC) emissions (65-89% of total VOC emissions). However, the production of O3 was much more sensitive to biogenic emissions in urban areas (22-34%). Therefore, the effects of biogenic emissions on O3 manifested mostly via their interaction with anthropogenic emissions of NOx. In the anthropogenic simulations, the average contribution of biogenic and natural sources to PM2.5 was estimated at 9% in Nashville/TN and 12% in the northeast domain. Because of the long atmospheric lifetimes of PM2.5, the contribution of biogenic/natural PM2.5 from the boundary conditions was higher than the contribution of biogenic aerosols produced within the domain. The elimination of biogenic emissions also affected the chemistry of other secondary PM2.5 components. Very little PM2.5 was formed in the biogenic simulations.

  12. Biogenic oxidized organic functional groups in aerosol particles from a mountain forest site and their similarities to laboratory chamber products

    Science.gov (United States)

    Schwartz, R. E.; Russell, L. M.; Sjostedt, S. J.; Vlasenko, A.; Slowik, J. G.; Abbatt, J. P. D.; MacDonald, A. M.; Li, S. M.; Liggio, J.; Toom-Sauntry, D.; Leaitch, W. R.

    2010-06-01

    Submicron particles collected at Whistler, British Columbia, at 1020 m a.s.l. during May and June 2008 on Teflon filters were analyzed by Fourier transform infrared (FTIR) and X-ray fluorescence (XRF) techniques for organic functional groups (OFG) and elemental composition. Organic mass (OM) concentrations ranged from less than 0.5 to 3.1 μg m-3, with a project mean and standard deviation of 1.3±1.0 μg m-3 and 0.21±0.16 μg m-3 for OM and sulfate, respectively. On average, organic hydroxyl, alkane, and carboxylic acid groups represented 34%, 33%, and 23% of OM, respectively. Ketone, amine and organosulfate groups constituted 6%, 5%, and volatile organic compounds (VOC), including isoprene and monoterpenes from biogenic VOC (BVOC) emissions and their oxidation products (methyl-vinylketone / methacrolein, MVK/MACR), were made using co-located proton transfer reaction mass spectrometry (PTR-MS). We present chemically-specific evidence of OFG associated with BVOC emissions. Positive matrix factorization (PMF) analysis attributed 65% of the campaign OM to biogenic sources, based on the correlations of one factor to monoterpenes and MVK/MACR. The remaining fraction was attributed to anthropogenic sources based on a correlation to sulfate. The functional group composition of the biogenic factor (consisting of 32% alkane, 25% carboxylic acid, 21% organic hydroxyl, 16% ketone, and 6% amine groups) was similar to that of secondary organic aerosol (SOA) reported from the oxidation of BVOCs in laboratory chamber studies, providing evidence that the magnitude and chemical composition of biogenic SOA simulated in the laboratory is similar to that found in actual atmospheric conditions. The biogenic factor OM is also correlated to dust elements, indicating that dust may act as a non-acidic SOA sink. This role is supported by the organic functional group composition and morphology of single particles, which were analyzed by scanning transmission X-ray microscopy near edge X

  13. Biogenic oxidized organic functional groups in aerosol particles from a mountain forest site and their similarities to laboratory chamber products

    Directory of Open Access Journals (Sweden)

    R. E. Schwartz

    2010-06-01

    Full Text Available Submicron particles collected at Whistler, British Columbia, at 1020 m a.s.l. during May and June 2008 on Teflon filters were analyzed by Fourier transform infrared (FTIR and X-ray fluorescence (XRF techniques for organic functional groups (OFG and elemental composition. Organic mass (OM concentrations ranged from less than 0.5 to 3.1 μg m−3, with a project mean and standard deviation of 1.3±1.0 μg m−3 and 0.21±0.16 μg m−3 for OM and sulfate, respectively. On average, organic hydroxyl, alkane, and carboxylic acid groups represented 34%, 33%, and 23% of OM, respectively. Ketone, amine and organosulfate groups constituted 6%, 5%, and <1% of the average organic aerosol composition, respectively. Measurements of volatile organic compounds (VOC, including isoprene and monoterpenes from biogenic VOC (BVOC emissions and their oxidation products (methyl-vinylketone / methacrolein, MVK/MACR, were made using co-located proton transfer reaction mass spectrometry (PTR-MS. We present chemically-specific evidence of OFG associated with BVOC emissions. Positive matrix factorization (PMF analysis attributed 65% of the campaign OM to biogenic sources, based on the correlations of one factor to monoterpenes and MVK/MACR. The remaining fraction was attributed to anthropogenic sources based on a correlation to sulfate. The functional group composition of the biogenic factor (consisting of 32% alkane, 25% carboxylic acid, 21% organic hydroxyl, 16% ketone, and 6% amine groups was similar to that of secondary organic aerosol (SOA reported from the oxidation of BVOCs in laboratory chamber studies, providing evidence that the magnitude and chemical composition of biogenic SOA simulated in the laboratory is similar to that found in actual atmospheric conditions. The biogenic factor OM is also correlated to dust elements, indicating that dust may act as a non-acidic SOA sink. This role is supported by the organic functional

  14. Biogenic emissions modeling for Southeastern Texas

    Energy Technology Data Exchange (ETDEWEB)

    Estes, M.; Jacob, D.; Jarvie, J. [Texas Natural Resource Conservation Commission, Austin, TX (United States)] [and others

    1996-12-31

    The Texas Natural Resource Conservation Commission (TNRCC) modeling staff performed biogenic hydrocarbon emissions modeling in support of gridded photochemical modeling for ozone episodes in 1992 and 1993 for the Coastal Oxidant Assessment for Southeast Texas (COAST) modeling domain. This paper summarizes the results of the biogenic emissions modeling and compares preliminary photochemical modeling results to ambient air monitoring data collected during the 1993 COAST study. Biogenic emissions were estimated using BIOME, a gridded biogenic emissions model that uses region-specific land use and biomass density data, and plant species-specific emission factor data. Ambient air monitoring data were obtained by continuous automated gas chromatography at two sites, one-hour canister samples at 5 sites, and 24-hour canister samples at 13 other sites. The concentrations of Carbon Bond-IV species (as determined from urban airshed modeling) were compared to measured hydrocarbon concentrations. In this paper, we examined diurnal and seasonal variations, as well as spatial variations.

  15. Ambient Gas-Particle Partitioning of Tracers for Biogenic Oxidation

    Energy Technology Data Exchange (ETDEWEB)

    Isaacman-VanWertz, Gabriel; Yee, Lindsay D.; Kreisberg, Nathan M.; Wernis, Rebecca; Moss, Joshua A.; Hering, Susanne V.; de Sa, Suzanne; Martin, Scot T.; Alexander, Mikaela L.; Palm, Brett B.; Hu, Weiwei; Campuzano-Jost, Pedro; Day, Douglas; Jimenez, Jose L.; Riva, Matthieu; Surratt, Jason D.; Viegas, Juarez; Manzi, Antonio; Edgerton, Eric S.; Baumann, K.; Souza, Rodrigo A.; Artaxo, Paulo; Goldstein, Allen H.

    2016-08-23

    Exchange of atmospheric organic compounds between gas and particle phases is important in the production and chemistry of particle-phase mass but is poorly understood due to a lack of simultaneous measurements in both phases of individual compounds. Measurements of particle- and gas phase organic compounds are reported here for the southeastern United States and central Amazonia. Polyols formed from isoprene oxidation contribute 8% and 15% on average to particle-phase organic mass at these sites but are also observed to have substantial gas-phase concentrations contrary to many models that treat these compounds as nonvolatile. The results of the present study show that the gas-particle partitioning of approximately 100 known and newly observed oxidation products is not well explained by environmental factors (e.g., temperature). Compounds having high vapor pressures have higher particle fractions than expected from absorptive equilibrium partitioning models. These observations support the conclusion that many commonly measured biogenic oxidation products may be bound in low-volatility mass (e.g., accretion products, inorganic organic adducts) that decomposes to individual compounds on analysis. However, the nature and extent of any such bonding remains uncertain. Similar conclusions are reach for both study locations, and average particle fractions for a given compound are consistent within similar to 25% across measurement sites.

  16. Modeling Global Biogenic Emission of Isoprene: Exploration of Model Drivers

    Science.gov (United States)

    Alexander, Susan E.; Potter, Christopher S.; Coughlan, Joseph C.; Klooster, Steven A.; Lerdau, Manuel T.; Chatfield, Robert B.; Peterson, David L. (Technical Monitor)

    1996-01-01

    Vegetation provides the major source of isoprene emission to the atmosphere. We present a modeling approach to estimate global biogenic isoprene emission. The isoprene flux model is linked to a process-based computer simulation model of biogenic trace-gas fluxes that operates on scales that link regional and global data sets and ecosystem nutrient transformations Isoprene emission estimates are determined from estimates of ecosystem specific biomass, emission factors, and algorithms based on light and temperature. Our approach differs from an existing modeling framework by including the process-based global model for terrestrial ecosystem production, satellite derived ecosystem classification, and isoprene emission measurements from a tropical deciduous forest. We explore the sensitivity of model estimates to input parameters. The resulting emission products from the global 1 degree x 1 degree coverage provided by the satellite datasets and the process model allow flux estimations across large spatial scales and enable direct linkage to atmospheric models of trace-gas transport and transformation.

  17. Estimating the Biogenic Non-Methane Hydrocarbon Emissions over Greece

    Directory of Open Access Journals (Sweden)

    Ermioni Dimitropoulou

    2018-01-01

    Full Text Available Biogenic emissions affect the urban air quality as they are ozone and secondary organic aerosol (SOA precursors and should be taken into account when applying photochemical pollution models. The present study presents an estimation of the magnitude of non-methane volatile organic compounds (BNMVOCs emitted by vegetation over Greece. The methodology is based on computation developed with the aid of a Geographic Information System (GIS and theoretical equations in order to produce an emission inventory on a 6 × 6 km2 spatial resolution, in a temporal resolution of 1 h covering one year (2016. For this purpose, a variety of input data was used: updated satellite land-use data, land-use specific emission potentials, foliar biomass densities, temperature, and solar radiation data. Hourly, daily, and annual isoprene, monoterpenes, and other volatile organic compounds (OVOCs were estimated. In the area under study, the annual biogenic emissions were estimated up to 472 kt, consisting of 46.6% isoprene, 28% monoterpenes, and 25.4% OVOCs. Results delineate an annual cycle with increasing values from March to April, while maximum emissions were observed from May to September, followed by a decrease from October to January.

  18. Seasonal trends of biogenic terpene emissions.

    Science.gov (United States)

    Helmig, Detlev; Daly, Ryan Woodfin; Milford, Jana; Guenther, Alex

    2013-09-01

    Biogenic volatile organic compound (BVOC) emissions from six coniferous tree species, i.e. Pinus ponderosa (Ponderosa Pine), Picea pungens (Blue Spruce), Pseudotsuga menziesii (Rocky Mountain Douglas Fir) and Pinus longaeva (Bristlecone Pine), as well as from two deciduous species, Quercus gambelii (Gamble Oak) and Betula occidentalis (Western River Birch) were studied over a full annual growing cycle. Monoterpene (MT) and sesquiterpene (SQT) emissions rates were quantified in a total of 1236 individual branch enclosure samples. MT dominated coniferous emissions, producing greater than 95% of BVOC emissions. MT and SQT demonstrated short-term emission dependence with temperature. Two oxygenated MT, 1,8-cineol and piperitone, were both light and temperature dependent. Basal emission rates (BER, normalized to 1000μmolm(-2)s(-1) and 30°C) were generally higher in spring and summer than in winter; MT seasonal BER from the coniferous trees maximized between 1.5 and 6.0μgg(-1)h(-1), while seasonal lows were near 0.1μgg(-1)h(-1). The fractional contribution of individual MT to total emissions was found to fluctuate with season. SQT BER measured from the coniferous trees ranged from emissions modeling, was not found to exhibit discernible growth season trends. A seasonal correction factor proposed by others in previous work to account for a sinusoidal shaped emission pattern was applied to the data. Varying levels of agreement were found between the data and model results for the different plant species seasonal data sets using this correction. Consequently, the analyses on this extensive data set suggest that it is not feasible to apply a universal seasonal correction factor across different vegetation species. A modeling exercise comparing two case scenarios, (1) without and (2) with consideration of the seasonal changes in emission factors illustrated large deviations when emission factors are applied for other seasons than those in which they were experimentally

  19. Cocaine affects foraging behaviour and biogenic amine modulated behavioural reflexes in honey bees

    Directory of Open Access Journals (Sweden)

    Eirik Søvik

    2014-11-01

    Full Text Available In humans and other mammals, drugs of abuse alter the function of biogenic amine pathways in the brain leading to the subjective experience of reward and euphoria. Biogenic amine pathways are involved in reward processing across diverse animal phyla, however whether cocaine acts on these neurochemical pathways to cause similar rewarding behavioural effects in animal phyla other than mammals is unclear. Previously, it has been shown that bees are more likely to dance (a signal of perceived reward when returning from a sucrose feeder after cocaine treatment. Here we examined more broadly whether cocaine altered reward-related behaviour, and biogenic amine modulated behavioural responses in bees. Bees developed a preference for locations at which they received cocaine, and when foraging at low quality sucrose feeders increase their foraging rate in response to cocaine treatment. Cocaine also increased reflexive proboscis extension to sucrose, and sting extension to electric shock. Both of these simple reflexes are modulated by biogenic amines. This shows that systemic cocaine treatment alters behavioural responses that are modulated by biogenic amines in insects. Since insect reward responses involve both octopamine and dopamine signalling, we conclude that cocaine treatment altered diverse reward-related aspects of behaviour in bees. We discuss the implications of these results for understanding the ecology of cocaine as a plant defence compound. Our findings further validate the honey bee as a model system for understanding the behavioural impacts of cocaine, and potentially other drugs of abuse.

  20. Cocaine affects foraging behaviour and biogenic amine modulated behavioural reflexes in honey bees.

    Science.gov (United States)

    Søvik, Eirik; Even, Naïla; Radford, Catherine W; Barron, Andrew B

    2014-01-01

    In humans and other mammals, drugs of abuse alter the function of biogenic amine pathways in the brain leading to the subjective experience of reward and euphoria. Biogenic amine pathways are involved in reward processing across diverse animal phyla, however whether cocaine acts on these neurochemical pathways to cause similar rewarding behavioural effects in animal phyla other than mammals is unclear. Previously, it has been shown that bees are more likely to dance (a signal of perceived reward) when returning from a sucrose feeder after cocaine treatment. Here we examined more broadly whether cocaine altered reward-related behaviour, and biogenic amine modulated behavioural responses in bees. Bees developed a preference for locations at which they received cocaine, and when foraging at low quality sucrose feeders increase their foraging rate in response to cocaine treatment. Cocaine also increased reflexive proboscis extension to sucrose, and sting extension to electric shock. Both of these simple reflexes are modulated by biogenic amines. This shows that systemic cocaine treatment alters behavioural responses that are modulated by biogenic amines in insects. Since insect reward responses involve both octopamine and dopamine signalling, we conclude that cocaine treatment altered diverse reward-related aspects of behaviour in bees. We discuss the implications of these results for understanding the ecology of cocaine as a plant defence compound. Our findings further validate the honey bee as a model system for understanding the behavioural impacts of cocaine, and potentially other drugs of abuse.

  1. Managing your wine fermentation to reduce the risk of biogenic amine formation

    Directory of Open Access Journals (Sweden)

    Anita Yolandi Smit

    2012-03-01

    Full Text Available Biogenic amines are nitrogenous organic compounds produced in wine from amino acid precursors mainly by microbial decarboxylation. The concentration of biogenic amines that can potentially be produced is dependent on the amount of amino acid precursors in the medium, the presence of decarboxylase positive microorganisms and conditions that enable microbial or biochemical activity such as the addition of nutrients to support the alcoholic and malolactic fermentation (MLF inoculated starter cultures. MLF can be conducted using co-inoculation or inoculated after the completion of alcoholic fermentation (AF that may also affect the level of biogenic amine in the wine. This study focussed on the impact the addition of complex commercial yeast and bacterial nutrients and the use of different MLF inoculation scenarios could have on the production of biogenic amine in the wine. Results obtained with wine showed that in this study the amine that was influenced by nutrient addition was histamine. In the synthetic winemaking using 12 different treatments no clear tendencies were observed. It was shown that in certain conditions co-inoculation could reduce the amount of biogenic amines produced.

  2. Electrical conductivity, dielectric permittivity and thermal properties of the compound aqua[bis(2-dimethylaminomethyl-4-NIT-phenolato)] copper(II) including NaCl impurity

    International Nuclear Information System (INIS)

    Yakuphanoglu, F.; Aydogdu, Y.; Schatzschneider, U.; Rentschler, E.

    2003-01-01

    The AC and DC conductivity, the dielectric permittivity and the thermal properties of the compound aqua[bis(2-dimethylaminomethyl-4-NIT-phenolato)] copper(II) including NaCl impurity were investigated. The AC conductivity follows a power law of the frequency σ(ω)∝ω s . At high frequency, where s is dependent of temperature, the conduction mechanism is reasonably well interpreted in terms of the correlated barrier hopping model. The DC conductivity indicates classical semiconductor behavior. So, it is evaluated that the sample is a typical inorganic semiconductor as its conductivity increases with increasing temperature and the electronic parameters such as activation energy and room-temperature conductivity are in the regime of semiconductors. It is also found that the dielectric constant and the dielectric loss values decrease with frequency and increase with temperature. The thermal properties were investigated under non-isothermal conditions by thermogravimetry (TGA) and differential scanning calorimetry (DSC). The kinetic parameters such as the order of the reaction, the activation energy (E), enthalpy of formation (ΔH) and characteristic temperatures of the exothermic peak were determined by means of the TGA and DSC techniques. The thermal conductivity shows enhancement with increasing temperature and, in the thermal conductivity mechanism, dominates transport of electrons

  3. New CE-ESI-MS analytical method for the separation, identification and quantification of seven phenolic acids including three isomer compounds in virgin olive oil.

    Science.gov (United States)

    Nevado, Juan José Berzas; Peñalvo, Gregorio Castañeda; Robledo, Virginia Rodríguez; Martínez, Gabriela Vargas

    2009-10-15

    A sensitive and expeditious CE-ESI-MS analytical method for the separation, identification and determination of seven selected antioxidants (cinnamic and benzoic acids), including three isomers of coumaric acid (ortho-, meta- and para-) has been developed. In order to obtain the analytical separation, capillary electrophoresis and CE-MS interface parameters (e.g., buffer pH and composition, sheath liquid and gas flow rates, sheath liquid composition, electrospray voltage, etc.) were carefully optimized. The polar fraction containing the selected phenolic acids was obtained using a previously optimized SPE pretreatment. An MS detector in order to extract structural information about the target compounds and facilitate their qualitative analysis was used in the negative ion mode. The proposed off-line SPE CE-ESI-MS method was validated by assessing its precision, LODs and LOQs, linearity range and accuracy. The optimized and validated method was used in order to quantify the selected antioxidants in various samples of virgin olive oil and extra-virgin olive oil obtained from the main olive varieties cropped in Castilla-La Mancha, Spain. Salicylic acid was used as internal standard throughout in order to ensure reproducibility in the quantitative analysis of the oil samples. The results confirmed the presence of hydroxyphenyl acetic, p-coumaric, ferulic and vanillic acids in substantial amounts (microg g(-1) level) in all samples.

  4. Biogenic amines in the meat of hunted pheasant and hare during the course of storage

    Directory of Open Access Journals (Sweden)

    Zdeňka Hutařová

    2014-01-01

    Full Text Available Venison is becoming more and more interesting for consumers. Although treatment procedures of hunted game differ from slaughtered livestock, the hygienic quality of game meat must still be ensured. Potential indicators of meat hygienic quality include the content of biogenic amines. The aim of the present study was to assess the content and changes of biogenic amines in the muscles of selected kinds of small game (common pheasant and brown hare during storage, and based on the obtained results, to assess the hygienic quality of the meat. Biogenic amines (putrescine, cadaverine, histamine, tyramine, phenylethylamine, and tryptamine in the breast and thigh muscles separated by reverse phase liquid chromatography and consequently were detected using tandem mass spectrometry. Based on the determined content of biogenic amines, both pheasant and hare meats complied with values of high quality meat. The sum of biogenic amines did not exceed the value of 5 mg/kg after 7 days at 0 °C or 7 °C in pheasant meat, and after 21 days at 0 °C or after 14 days at 7 °C in brown hare meat. The biogenic amine content and the speed of their formation in venison can be very helpful for the evaluation of both meat hygienic quality and safety of these foods during storage.

  5. Study of the extraction of uranium (VI) by bis-(di-n-butyl-phosphate) compounds including a polyheteroatomic chain from nitrate solutions

    International Nuclear Information System (INIS)

    Archelas, E.; Buono, G.; Waegell, B.

    1982-01-01

    Compounds 1 to 4 with two di-n-butylphosphate groups linked by a polyheteroatomic chain (BuO) 2 P(O)OCH 2 (CH 2 XCH 2 )sub(n)CH 2 OP(O)(OBu) 2 (1: n = 0; 2: n = 1, X = 0; 3: n = 2, X = 0; 4: n = 1, X = S) were prepared respectively by action of chlorodi-n-butylphosphate on ethyleneglycol, di and triethyleneglycol, and thiodiethyleneglycol under phase transfer conditions. The extraction of uranium (VI) from aqueous nitrate phase with these compounds, in toluene diluent, was studied. Distribution ratios with compounds 1 to 3 are somewhat greater than those obtained with tri-n-butylphosphate. Extraction studies reveal that polyoxygenated chain of these compounds takes part in U(VI) complexation. The general expression for the complexes is assumed to be UO 2 (NO 3 ) 2 Lsub(m) in which L is extractant compound and m the number of molecules coordinated to uranyl cation. Extraction stoichiometry is dependent upon extractant compound and its concentration in organic phase. For the compounds 1 to 3, m = 1.5 when extractant concentration is higher than 0.1 M; m takes the different values 0.5, 1.0 and 1.5 when extractant concentration is lower than 0.1 M. For the compound in which X is sulfur atom, m = 2.0 over all studied concentration range. It was found that in the solvent extraction of uranium (VI) with these compounds, di-n-butylphosphoric acid exhibits a synergistic effect increasing the distribution ratio of U(VI) by a factor of 100. (author)

  6. A survey of perfluorinated compounds in surface water and biota including dolphins from the Ganges River and in other waterbodies in India

    Digital Repository Service at National Institute of Oceanography (India)

    Yeung, L.W.Y.; Yamashita, N.; Taniyasu, S.; Lam, P.K.S.; Sinha, R.K.; Borole, D.V.; Kannan, K.

    compounds have been implemented in the EU (Directive 76/769), Canada (http://canadagazette.gc.ca/partII/2008/20080611/html/sor178-e.html), USA (the New Jersey, the Department of Environmental Protection), and Japan (under the Rule of Regulation... of perfluoroalkyl compounds in the bottlenose dolphin (Tursiops truncatus) food web Environ. Sci. & Tech. 2006, 40, 4138-4144. 13    13    ISO25101 (The International Organization for Standardization) "Water quality - Determination of perfluorooctanesulfonate...

  7. BIOGENIC AMINES CONTENT IN DIFFERENT WINE SAMPLES

    Directory of Open Access Journals (Sweden)

    Attila Kántor

    2015-02-01

    Full Text Available Twenty-five samples of different Slovak wines before and after filtration were analysed in order to determine the content of eight biogenic amines (tryptamine, phenylalanine, putrescine, cadaverine, histamine, tyramine, spermidine and spermine. The method involves extraction of biogenic amines from wine samples with used dansyl chloride. Ultra-high performance liquid chromatography (UHPLC was used for determination of biogenic amines equipped with a Rapid Resolution High Definition (RRHD, DAD detectors and Extend-C18 LC column (50 mm x 3.0 mm ID, 1.8 μm particle size. In this study the highest level of biogenic amine in all wine samples represent tryptamine (TRM with the highest content 170.9±5.3 mg/L in Pinot Blanc wine. Phenylalanine (PHE cadaverine (CAD, histamine (HIS and spermidine (SPD were not detected in all wines; mainly SPD was not detected in 16 wines, HIS not detected in 14 wines, PHE and CAD not detected in 2 wines. Tyramine (TYR, spermine (SPN and putrescine (PUT were detected in all wines, but PUT and SPN in very low concentration. The worst wine samples with high biogenic amine content were Saint Laurent (BF, Pinot Blanc (S and Pinot Noir (AF.

  8. Impact of biogenic emissions on ozone formation in the Mediterranean area - a BEMA modelling study

    International Nuclear Information System (INIS)

    Thunis, P.; Cuvelier, C.

    2000-01-01

    The aim of this modelling study is to understand and quantify the influence of biogenic volatile organic compound (BVOC) emissions on the formation of tropospheric ozone in the Burriana area (north of Valencia) on the east coast of Spain. The mesoscale modelling system used consists of the meteorology/transport module TVM and the chemical reaction mechanism RACM. The results of the model simulations are validated and compared with the data collected during the biogenic emissions in the mediterranean area (BEMA) field campaign that took place in June 1997. Anthropogenic and biogenic emission inventories have been constructed with an hourly resolution. Averaged (over the land area and over 24 h) emission fluxes for AVOC, anthropogenic NO x , BVOC and biogenic NO x are given by 16.0, 9.9, 6.2, and 0.7 kg km -2 day -1 , respectively. The impact of biogenic emissions is investigated on peak ozone values by performing simulations with and without biogenic emissions; while keeping anthropogenic emissions constant. The impact on ozone formation is also studied in combination with some anthropogenic emissions reduction strategies, i.e. when anthropogenic VOC emissions and/or NO x emissions are reduced. A factor separation technique is applied to isolate the impact due to biogenic emissions from the overall impact due to biogenic and anthropogenic emissions together. The results indicate that the maximum impact of biogenic emissions on ozone formation represents at the most 10 ppb, while maximum ozone values are of the order of 100 ppb. At different locations the maximum impact is reached at different times of the day depending on the arrival time of the sea breeze. It is also shown that this impact does not coincide in time with the maximum simulated ozone concentrations that are reached over the day. By performing different emission reduction scenarios, BVOC impacts are found to be sensitive mainly to NO x , and not to AVOC. Finally, it is shown that amongst the various

  9. The ABAG biogenic emissions inventory project

    Science.gov (United States)

    Carson-Henry, C. (Editor)

    1982-01-01

    The ability to identify the role of biogenic hydrocarbon emissions in contributing to overall ozone production in the Bay Area, and to identify the significance of that role, were investigated in a joint project of the Association of Bay Area Governments (ABAG) and NASA/Ames Research Center. Ozone, which is produced when nitrogen oxides and hydrocarbons combine in the presence of sunlight, is a primary factor in air quality planning. In investigating the role of biogenic emissions, this project employed a pre-existing land cover classification to define areal extent of land cover types. Emission factors were then derived for those cover types. The land cover data and emission factors were integrated into an existing geographic information system, where they were combined to form a Biogenic Hydrocarbon Emissions Inventory. The emissions inventory information was then integrated into an existing photochemical dispersion model.

  10. Validation of an HPLC Analytical Method for Determination of Biogenic Amines in Agricultural Products and Monitoring of Biogenic Amines in Korean Fermented Agricultural Products.

    Science.gov (United States)

    Yoon, Hyeock; Park, Jung Hyuck; Choi, Ari; Hwang, Han-Joon; Mah, Jae-Hyung

    2015-09-01

    An HPLC analytical method was validated for the quantitative determination of biogenic amines in agricultural products. Four agricultural foods, including apple juice, Juk, corn oil and peanut butter, were selected as food matrices based on their water and fat contents (i.e., non-fatty liquid, non-fatty solid, fatty liquid and fatty solid, respectively). The precision, accuracy, recovery, limit of detection (LOD) and quantification (LOQ) were determined to test the validity of an HPLC procedure for the determination of biogenic amines, including tryptamine, β-phenylethylamine, putrescine, cadaverine, histamine, tyramine, spermidine and spermine, in each matrix. The LODs and LOQs for the biogenic amines were within the range of 0.01~0.10 mg/kg and 0.02~0.31 mg/kg, respectively. The relative standard deviation (RSD) of intraday for biogenic amine concentrations ranged from 1.86 to 5.95%, whereas the RSD of interday ranged from 2.08 to 5.96%. Of the matrices spiked with biogenic amines, corn oil with tyramine and Juk with putrescine exhibited the least accuracy of 84.85% and recovery rate of 89.63%, respectively, at the lowest concentration (10 mg/kg). Therefore, the validation results fulfilled AOAC criteria and recommendations. Subsequently, the method was applied to the analysis of biogenic amines in fermented agricultural products for a total dietary survey in Korea. Although the results revealed that Korean traditional soy sauce and Doenjang contained relatively high levels of histamine, the amounts are of no concern if these fermented agricultural products serve as condiments.

  11. Formation of anthropogenic secondary organic aerosol (SOA and its influence on biogenic SOA properties

    Directory of Open Access Journals (Sweden)

    E. U. Emanuelsson

    2013-03-01

    Full Text Available Secondary organic aerosol (SOA formation from mixed anthropogenic and biogenic precursors has been studied exposing reaction mixtures to natural sunlight in the SAPHIR chamber in Jülich, Germany. In this study aromatic compounds served as examples of anthropogenic volatile organic compound (VOC and a mixture of α-pinene and limonene as an example for biogenic VOC. Several experiments with exclusively aromatic precursors were performed to establish a relationship between yield and organic aerosol mass loading for the atmospheric relevant range of aerosol loads of 0.01 to 10 μg m−3. The yields (0.5 to 9% were comparable to previous data and further used for the detailed evaluation of the mixed biogenic and anthropogenic experiments. For the mixed experiments a number of different oxidation schemes were addressed. The reactivity, the sequence of addition, and the amount of the precursors influenced the SOA properties. Monoterpene oxidation products, including carboxylic acids and dimer esters were identified in the aged aerosol at levels comparable to ambient air. OH radicals were measured by Laser Induced Fluorescence, which allowed for establishing relations of aerosol properties and composition to the experimental OH dose. Furthermore, the OH measurements in combination with the derived yields for aromatic SOA enabled application of a simplified model to calculate the chemical turnover of the aromatic precursor and corresponding anthropogenic contribution to the mixed aerosol. The estimated anthropogenic contributions were ranging from small (≈8% up to significant fraction (>50% providing a suitable range to study the effect of aerosol composition on the aerosol volatility (volume fraction remaining (VFR at 343 K: 0.86–0.94. The aromatic aerosol had higher oxygen to carbon ratio O/C and was less volatile than the biogenic fraction. However, in order to produce significant amount of aromatic SOA the reaction mixtures needed a higher

  12. Uncertainty in biogenic isoprene emissions and its impacts on tropospheric chemistry in East Asia.

    Science.gov (United States)

    Han, K M; Park, R S; Kim, H K; Woo, J H; Kim, J; Song, C H

    2013-10-01

    In this study, the accuracy of biogenic isoprene emission fluxes over East Asia during two summer months (July and August) was examined by comparing two tropospheric HCHO columns (ΩHCHO) obtained from the SCIAMACHY sensor and the Community Multi-scale Air Quality (CMAQ v4.7.1) model simulations, using three available biogenic isoprene emission inventories over East Asia: i) GEIA, ii) MEGAN and iii) MOHYCAN. From this comparative analysis, the tropospheric HCHO columns from the CMAQ model simulations, using the MEGAN and MOHYCAN emission inventories (Ω(CMAQ, MEGAN) and Ω(CMAQ, MOHYCAN)), were found to agree well with the tropospheric HCHO columns from the SCIAMACHY observations (Ω(SCIA)). Secondly, the propagation of such uncertainties in the biogenic isoprene emission fluxes to the levels of atmospheric oxidants (e.g., OH and HO2) and other atmospheric gaseous/particulate species over East Asia during the two summer months was also investigated. As the biogenic isoprene emission fluxes decreased from the GEIA to the MEGAN emission inventories, the levels of OH radicals increased by factors of 1.39 and 1.75 over Central East China (CEC) and South China, respectively. Such increases in the OH radical mixing ratios subsequently influence the partitioning of HO(y) species. For example, the HO2/OH ratios from the CMAQ model simulations with GEIA isoprene emissions were 2.7 times larger than those from the CMAQ model simulations based on MEGAN isoprene emissions. The large HO2/OH ratios from the CMAQ model simulations with the GEIA biogenic emission were possibly due to the overestimation of GEIA biogenic isoprene emissions over East Asia. It was also shown that such large changes in HO(x) radicals created large differences on other tropospheric compounds (e.g., NO(y) chemistry) over East Asia during the summer months. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

  13. Influence on wine biogenic amine composition of modifications to soil N availability and grapevine N by cover crops.

    Science.gov (United States)

    Pérez-Álvarez, Eva P; Garde-Cerdán, Teresa; Cabrita, Maria João; García-Escudero, Enrique; Peregrina, Fernando

    2017-11-01

    Vineyard soil management can modify the nitrogen soil availability and, therefore, grape amino acid content. These compounds are precursors of biogenic amines, which have negative effects on wine quality and human health. The objective was to study whether the effect of conventional tillage and two cover crops (barley and clover) on grapevine nitrogen status could be related to wine biogenic amines. Over 4 years, soil NO 3 - -N, nitrogen content in leaf and wine biogenic amine concentration were determined. Barley reduced soil NO 3 - -N availability and clover increased it. In 2011, at bloom, nitrogen content decreased with barley treatment in both blade and petiole. In 2012, nitrogen content in both leaf tissues at bloom was greater with clover than with tillage and barley treatments. Also, total biogenic amines decreased in barley with respect to tillage and clover treatments. There were correlations between some individual and total biogenic amine concentrations with respect to nitrogen content in leaf tissues. Wine biogenic amine concentration can be affected by the grapevine nitrogen status, provoked by changes in the soil NO 3 - -N availability with both cover crop treatments. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  14. Effect of crop development on biogenic emissions from plant populations grown in closed plant growth chambers

    Science.gov (United States)

    Batten, J. H.; Stutte, G. W.; Wheeler, R. M.

    1995-01-01

    The Biomass Production Chamber at John F. Kennedy Space Center is a closed plant growth chamber facility that can be used to monitor the level of biogenic emissions from large populations of plants throughout their entire growth cycle. The head space atmosphere of a 26-day-old lettuce (Lactuca sativa cv. Waldmann's Green) stand was repeatedly sampled and emissions identified and quantified using GC-mass spectrometry. Concentrations of dimethyl sulphide, carbon disulphide, alpha-pinene, furan and 2-methylfuran were not significantly different throughout the day; whereas, isoprene showed significant differences in concentration between samples collected in light and dark periods. Volatile organic compounds from the atmosphere of wheat (Triticum aestivum cv. Yecora Rojo) were analysed and quantified from planting to maturity. Volatile plant-derived compounds included 1-butanol, 2-ethyl-1-hexanol, nonanal, benzaldehyde, tetramethylurea, tetramethylthiourea, 2-methylfuran and 3-methylfuran. Concentrations of volatiles were determined during seedling establishment, vegetative growth, anthesis, grain fill and senescence and found to vary depending on the developmental stage. Atmospheric concentrations of benzaldehyde and nonanal were highest during anthesis, 2-methylfuran and 3-methylfuran concentrations were greatest during grain fill, and the concentration of the tetramethylurea peaked during senescence.

  15. Biogenic Crystal and New Materials

    International Nuclear Information System (INIS)

    Bigi, A.; Falini, G.; Gazzano, M.; Roveri, N.; Ripamonti, A.; CNR, Bologna

    1998-01-01

    Organism use inorganic compounds to form inorganic-organic structured composites, with remarkable properties and functions. The target of many laboratory experiments is the natural processes simulation, in order to understand the molecular recognition process between the nucleation sites on the macromolecular matrix and the ions on the growing crystal nuclei. The understanding of biological phenomena opens new routes to the design of new materials or to the improvement of ceramics, polymers, semiconductors and composites [it

  16. Biogenic amines in meat and meat products.

    Science.gov (United States)

    Ruiz-Capillas, Claudia; Jiménez-Colmenero, Francisco

    2004-01-01

    It has been recognized for some time that biogenic amines occur in a wide range of foods, among them meat and meat products. Meat is an important component of the diet in developed countries. The presence of these amines in food is of interest for two reasons: firstly, for toxicological reasons, in the sense that high levels of dietary biogenic amines can be toxic for certain consumers, and secondly, for their role as possible quality indicators. Based on these two premises, the present article offers a new analysis on aspects of toxicology and on the use of biogenic amines as a quality control method, as well as on their presence in meat and meat products. The article focuses particularly on factors affecting the production of biogenic amines, with reference to various parameters relating to microorganisms, meat raw materials, and processing conditions. A better understanding of the factors determining their formation (i.e., microorganisms, raw materials used, and technological processes applied) and their effects could lead to ways of controlling their production, limiting their presence in the end product, and hence, rendering them less toxic.

  17. Microbiological, physicochemical properties and biogenic amine ...

    African Journals Online (AJOL)

    Thirty three strained yoghurt samples were collected from local open markets in different provinces of Turkey (Afyon [AF], Aydın [AY], Burdur [B], Isparta [I] and Muğla [M]). Physicochemical and microbiological properties, as well as biogenic amine content, were examined in each of the samples. The dry matter (17.90 to ...

  18. Impact of biogenic emissions on feedbacks in the climate system

    Science.gov (United States)

    Krüger, Olaf

    2017-04-01

    Impact of biogenic emissions on feedbacks in the climate system Bio-geophysical feedback between marine or continental ecosystems and the atmosphere potentially can alter climate change. A prominent feedback loop which is under discussion since 1983 bases on the emission of biologically produced gases - molecular oxygen, sulphur containing compounds and possibly isoprene, supersaturated in oceanic waters - into the marine troposphere. These by-products of phytoplankton metabolism lead to aerosol production and procure sustained influence on climate via modulation of cloud optical properties. In this contribution some findings related to the above mentioned climate processes are presented with special emphasis on marine ecosystems. A comparison of marine and continental ecosystems is made and different processes with major impact on feedbacks in the climate system are discussed.

  19. Biogenic amines in Italian Pecorino cheese

    Directory of Open Access Journals (Sweden)

    Maria eSchirone

    2012-05-01

    Full Text Available The quality of distinctive artisanal cheeses is closely associated with the territory of production and its traditions. Pedoclimatic characteristics, genetic autochthonous variations and anthropic components create an environment so specific that it would be extremely difficult to reproduce elsewhere. Pecorino cheese is included in this sector of the market and is widely diffused in Italy (approximately 53.727t of production. Pecorino is a common name given to indicate Italian cheeses made exclusively from pure ewes' milk characterized by a high content of fat matter and it is mainly produced in the middle and south of Italy by traditional procedures from raw or thermized milk. The microbiota plays a major role in the development of the organoleptic characteristics of the cheese but it can also be responsible for the accumulation of undesirable substances, such as biogenic amines (BA. Several factors can contribute to the qualitative and quantitative profiles of BA’s in Pecorino cheese such as environmental hygienic conditions, pH, salt concentration, aw, fat content, pasteurization of milk, decarboxylase microorganisms, starter cultures, temperature and time of ripening, storage, part of the cheese (core, edge and the presence of cofactor. Generally, the total content of BA’s can range from about 100-2400 mg/kg, with a prevalence of toxicologically important BA’s, tyramine and histamine. The presence of BA in Pecorino cheeses is becoming increasingly important to consumers and cheese-maker alike, due to the potential threats of toxicity to humans and consequent trade implications.

  20. Carbon nanomaterial based electrochemical sensors for biogenic amines

    International Nuclear Information System (INIS)

    Yang, Xiao; He, Xiulan; Li, Fangping; Fei, Junjie; Feng, Bo; Ding, Yonglan

    2013-01-01

    This review describes recent advances in the use of carbon nanomaterials for electroanalytical detection of biogenic amines (BAs). It starts with a short introduction into carbon nanomaterials such as carbon nanotubes, graphene, nanodiamonds, carbon nanofibers, fullerenes, and their composites. Next, electrochemical sensing schemes are discussed for various BAs including dopamine, serotonin, epinephrine, norepinephrine, tyramine, histamine and putrescine. Examples are then given for methods for simultaneous detection of various BAs. Finally, we discuss the current and future challenges of carbon nanomaterial-based electrochemical sensors for BAs. The review contains 175 references. (author)

  1. Modeling and direct sensitivity analysis of biogenic emissions impacts on regional ozone formation in the Mexico-U.S. border area.

    Science.gov (United States)

    Mendoza-Dominguez, A; Wilkinson, J G; Yang, Y J; Russell, A G

    2000-01-01

    A spatially and temporally resolved biogenic hydrocarbon and nitrogen oxides (NOx) emissions inventory has been developed for a region along the Mexico-U.S. border area. Average daily biogenic non-methane organic gases (NMOG) emissions for the 1700 x 1000 km2 domain were estimated at 23,800 metric tons/day (62% from Mexico and 38% from the United States), and biogenic NOx was estimated at 1230 metric tons/day (54% from Mexico and 46% from the United States) for the July 18-20, 1993, ozone episode. The biogenic NMOG represented 74% of the total NMOG emissions, and biogenic NOx was 14% of the total NOx. The CIT photochemical airshed model was used to assess how biogenic emissions impact air quality. Predicted ground-level ozone increased by 5-10 ppb in most rural areas, 10-20 ppb near urban centers, and 20-30 ppb immediately downwind of the urban centers compared to simulations in which only anthropogenic emissions were used. A sensitivity analysis of predicted ozone concentration to emissions was performed using the decoupled direct method for three dimensional air quality models (DDM-3D). The highest positive sensitivity of ground-level ozone concentration to biogenic volatile organic compound (VOC) emissions (i.e., increasing biogenic VOC emissions results in increasing ozone concentrations) was predicted to be in locations with high NOx levels, (i.e., the urban areas). One urban center--Houston--was predicted to have a slight negative sensitivity to biogenic NO emissions (i.e., increasing biogenic NO emissions results in decreasing local ozone concentrations). The highest sensitivities of ozone concentrations to on-road mobile source VOC emissions, all positive, were mainly in the urban areas. The highest sensitivities of ozone concentrations to on-road mobile source NOx emissions were predicted in both urban (either positive or negative sensitivities) and rural (positive sensitivities) locations.

  2. Control of biogenic amines in food--existing and emerging approaches.

    Science.gov (United States)

    Naila, Aishath; Flint, Steve; Fletcher, Graham; Bremer, Phil; Meerdink, Gerrit

    2010-09-01

    Biogenic amines have been reported in a variety of foods, such as fish, meat, cheese, vegetables, and wines. They are described as low molecular weight organic bases with aliphatic, aromatic, and heterocyclic structures. The most common biogenic amines found in foods are histamine, tyramine, cadaverine, 2-phenylethylamine, spermine, spermidine, putrescine, tryptamine, and agmatine. In addition octopamine and dopamine have been found in meat and meat products and fish. The formation of biogenic amines in food by the microbial decarboxylation of amino acids can result in consumers suffering allergic reactions, characterized by difficulty in breathing, itching, rash, vomiting, fever, and hypertension. Traditionally, biogenic amine formation in food has been prevented, primarily by limiting microbial growth through chilling and freezing. However, for many fishing based subsistence populations, such measures are not practical. Therefore, secondary control measures to prevent biogenic amine formation in foods or to reduce their levels once formed need to be considered as alternatives. Such approaches to limit microbial growth may include hydrostatic pressures, irradiation, controlled atmosphere packaging, or the use of food additives. Histamine may potentially be degraded by the use of bacterial amine oxidase or amine-negative bacteria. Only some will be cost-effective and practical for use in subsistence populations.

  3. Control of Biogenic Amines in Food—Existing and Emerging Approaches

    Science.gov (United States)

    Naila, Aishath; Flint, Steve; Fletcher, Graham; Bremer, Phil; Meerdink, Gerrit

    2010-01-01

    Biogenic amines have been reported in a variety of foods, such as fish, meat, cheese, vegetables, and wines. They are described as low molecular weight organic bases with aliphatic, aromatic, and heterocyclic structures. The most common biogenic amines found in foods are histamine, tyramine, cadaverine, 2-phenylethylamine, spermine, spermidine, putrescine, tryptamine, and agmatine. In addition octopamine and dopamine have been found in meat and meat products and fish. The formation of biogenic amines in food by the microbial decarboxylation of amino acids can result in consumers suffering allergic reactions, characterized by difficulty in breathing, itching, rash, vomiting, fever, and hypertension. Traditionally, biogenic amine formation in food has been prevented, primarily by limiting microbial growth through chilling and freezing. However, for many fishing based subsistence populations, such measures are not practical. Therefore, secondary control measures to prevent biogenic amine formation in foods or to reduce their levels once formed need to be considered as alternatives. Such approaches to limit microbial growth may include hydrostatic pressures, irradiation, controlled atmosphere packaging, or the use of food additives. Histamine may potentially be degraded by the use of bacterial amine oxidase or amine-negative bacteria. Only some will be cost-effective and practical for use in subsistence populations. PMID:21535566

  4. A plant chamber system with downstream reaction chamber to study the effects of pollution on biogenic emissions

    NARCIS (Netherlands)

    Timovsky, J.; Gankema, Paulien; Pierik, Ronald; Holzinger, Rupert

    2014-01-01

    A system of two plant chambers and a downstream reaction chamber has been set up to investigate the emission of biogenic volatile organic compounds (BVOCs) and possible effects of pollutants such as ozone. The system can be used to compare BVOC emissions from two sets of differently treated plants,

  5. Selection of Nutrient Used in Biogenic Healing Agent for Cementitious Materials

    Directory of Open Access Journals (Sweden)

    Eirini Tziviloglou

    2017-06-01

    Full Text Available Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the investigation of the most appropriate organic carbon source to be used as component of a biogenic healing agent. It is of great importance to use an appropriate organic source, since it will first ensure an optimal bacterial performance in terms of metabolic activity, while it should, second, affect the least the properties of the cementitious matrix. The selection is made among three different organic compounds, namely calcium lactate (CaL, calcium acetate (CaA, and sodium gluconate (NaG. The methodology that was used for the research was based on continuous and non-continuous oxygen consumption measurements of washed bacterial cultures and on compressive strength tests on mortar cubes. The oxygen consumption investigation revealed a preference for CaL and CaA, but an indifferent behavior for NaG. The compressive strength on mortar cubes with different amounts of either CaL or CaA (up to 2.24% per cement weight was not or it was positively affected when the compounds were dissolved in the mixing water. In fact, for CaL, the increase in compressive strength reached 8%, while for CaA, the maximum strength increase was 13.4%.

  6. Selection of nutrient used in biogenic healing agent for cementitious materials

    Science.gov (United States)

    Tziviloglou, Eirini; Wiktor, Virginie; Jonkers, Henk M.; Schlangen, Erik

    2017-06-01

    Biogenic self-healing cementitious materials target on the closure of micro-cracks with precipitated inorganic minerals originating from bacterial metabolic activity. Dormant bacterial spores and organic mineral compounds often constitute a biogenic healing agent. The current paper focuses on the investigation of the most appropriate organic carbon source to be used as component of a biogenic healing agent. It is of great importance to use an appropriate organic source, since it will firstly ensure an optimal bacterial performance in terms of metabolic activity, while it should secondly affect the least the properties of the cementitious matrix. The selection is made among three different organic compounds, namely calcium lactate, calcium acetate and sodium gluconate. The methodology that was used for the research was based on continuous and non-continuous oxygen consumption measurements of washed bacterial cultures and on compressive strength tests on mortar cubes. The oxygen consumption investigation revealed a preference for calcium lactate and acetate, but an indifferent behaviour for sodium gluconate. The compressive strength on mortar cubes with different amounts of either calcium lactate or acetate (up to 2.24% per cement weight) was not or it was positively affected when the compounds were dissolved in the mixing water. In fact, for calcium lactate the increase in compressive strength reached 8%, while for calcium acetate the maximum strength increase was 13.4%.

  7. The ethanol extract of Scutellaria baicalensis and the active compounds induce cell cycle arrest and apoptosis including upregulation of p53 and Bax in human lung cancer cells

    International Nuclear Information System (INIS)

    Gao Jiayu; Morgan, Winston A.; Sanchez-Medina, Alberto; Corcoran, Olivia

    2011-01-01

    Despite a lack of scientific authentication, Scutellaria baicalensis is clinically used in Chinese medicine as a traditional adjuvant to chemotherapy of lung cancer. In this study, cytotoxicity assays demonstrated that crude ethanolic extracts of S. baicalensis were selectively toxic to human lung cancer cell lines A549, SK-LU-1 and SK-MES-1 compared with normal human lung fibroblasts. The active compounds baicalin, baicalein and wogonin did not exhibit such selectivity. Following exposure to the crude extracts, cellular protein expression in the cancer cell lines was assessed using 2D gel electrophoresis coupled with MALDI-TOF-MS/Protein Fingerprinting. The altered protein expression indicated that cell growth arrest and apoptosis were potential mechanisms of cytotoxicity. These observations were supported by PI staining cell cycle analysis using flow cytometry and Annexin-V apoptotic analysis by fluorescence microscopy of cancer cells treated with the crude extract and pure active compounds. Moreover, specific immunoblotting identification showed the decreased expression of cyclin A results in the S phase arrest of A549 whereas the G 0 /G 1 phase arrest in SK-MES-1 cells results from the decreased expression of cyclin D1. Following treatment, increased expression in the cancer cells of key proteins related to the enhancement of apoptosis was observed for p53 and Bax. These results provide further insight into the molecular mechanisms underlying the clinical use of this herb as an adjuvant to lung cancer therapy. - Research highlights: → Scutellaria baicalensis is a clinical adjuvant to lung cancer chemotherapy in China. → Scutellaria ethanol extracts selectively toxic to A549, SK-LU-1 and SK-MES-1. → Baicalin, baicalein and wogonin were toxic to all lung cancer cell lines. → Proteomics identified increased p53 and BAX in response to Scutellaria extracts.

  8. Formation temperatures of thermogenic and biogenic methane

    Science.gov (United States)

    Stolper, D.A.; Lawson, M.; Davis, C.L.; Ferreira, A.A.; Santos Neto, E. V.; Ellis, G.S.; Lewan, M.D.; Martini, Anna M.; Tang, Y.; Schoell, M.; Sessions, A.L.; Eiler, J.M.

    2014-01-01

    Methane is an important greenhouse gas and energy resource generated dominantly by methanogens at low temperatures and through the breakdown of organic molecules at high temperatures. However, methane-formation temperatures in nature are often poorly constrained. We measured formation temperatures of thermogenic and biogenic methane using a “clumped isotope” technique. Thermogenic gases yield formation temperatures between 157° and 221°C, within the nominal gas window, and biogenic gases yield formation temperatures consistent with their comparatively lower-temperature formational environments (<50°C). In systems where gases have migrated and other proxies for gas-generation temperature yield ambiguous results, methane clumped-isotope temperatures distinguish among and allow for independent tests of possible gas-formation models.

  9. Biogenic Mn-Oxides in Subseafloor Basalts.

    Science.gov (United States)

    Ivarsson, Magnus; Broman, Curt; Gustafsson, Håkan; Holm, Nils G

    2015-01-01

    The deep biosphere of the subseafloor basalts is recognized as a major scientific frontier in disciplines like biology, geology, and oceanography. Recently, the presence of fungi in these environments has involved a change of view regarding diversity and ecology. Here, we describe fossilized fungal communities in vugs in subseafloor basalts from a depth of 936.65 metres below seafloor at the Detroit Seamount, Pacific Ocean. These fungal communities are closely associated with botryoidal Mn oxides composed of todorokite. Analyses of the Mn oxides by Electron Paramagnetic Resonance spectroscopy (EPR) indicate a biogenic signature. We suggest, based on mineralogical, morphological and EPR data, a biological origin of the botryoidal Mn oxides. Our results show that fungi are involved in Mn cycling at great depths in the seafloor and we introduce EPR as a means to easily identify biogenic Mn oxides in these environments.

  10. Rett syndrome - Stimulation of endogenous biogenic amines

    Science.gov (United States)

    Pelligra, R.; Norton, R. D.; Wilkinson, R.; Leon, H. A.; Matson, W. R.

    1992-01-01

    Transient hypercapnic hyperoxemia was induced in two Rett syndrome children by the administration of a gaseous mixture of 80 percent O2 and 20 percent CO2. Time course studies of neurotransmitters and their metabolites showed an immediate and marked increase in central biogenic amine turnover following inhalation of the gas mixture. The increased turnover of biogenic amines was associated with improved clinical changes. This suggests a coupled relationship and provides further support for an etiological role of neurotransmitter dysfunction in Rett syndrome. In a complementary study, elevation of pulmonary CO2 by application of a simple rebreathing device resulted in improvement of abnormal blood gases and elimination of the Cheyne-Stokes-like respiratory pattern of the Rett syndrome. Near normalization of the EEG occurred when a normal respiratory pattern was imposed by means of a respirator. Taken together, these results lead to the preliminary conclusion that cerebral hypoxemia secondary to abnormal respiratory function may contribute to diminished production of biogenic amines in Rett syndrome.

  11. Impact of biogenic emission uncertainties on the simulated response of ozone and fine particulate matter to anthropogenic emission reductions.

    Science.gov (United States)

    Hogrefe, Christian; Isukapalli, Sastry S; Tang, Xiaogang; Georgopoulos, Panos G; He, Shan; Zalewsky, Eric E; Hao, Winston; Ku, Jia-Yeong; Key, Tonalee; Sistla, Gopal

    2011-01-01

    The role of emissions of volatile organic compounds and nitric oxide from biogenic sources is becoming increasingly important in regulatory air quality modeling as levels of anthropogenic emissions continue to decrease and stricter health-based air quality standards are being adopted. However, considerable uncertainties still exist in the current estimation methodologies for biogenic emissions. The impact of these uncertainties on ozone and fine particulate matter (PM2.5) levels for the eastern United States was studied, focusing on biogenic emissions estimates from two commonly used biogenic emission models, the Model of Emissions of Gases and Aerosols from Nature (MEGAN) and the Biogenic Emissions Inventory System (BEIS). Photochemical grid modeling simulations were performed for two scenarios: one reflecting present day conditions and the other reflecting a hypothetical future year with reductions in emissions of anthropogenic oxides of nitrogen (NOx). For ozone, the use of MEGAN emissions resulted in a higher ozone response to hypothetical anthropogenic NOx emission reductions compared with BEIS. Applying the current U.S. Environmental Protection Agency guidance on regulatory air quality modeling in conjunction with typical maximum ozone concentrations, the differences in estimated future year ozone design values (DVF) stemming from differences in biogenic emissions estimates were on the order of 4 parts per billion (ppb), corresponding to approximately 5% of the daily maximum 8-hr ozone National Ambient Air Quality Standard (NAAQS) of 75 ppb. For PM2.5, the differences were 0.1-0.25 microg/m3 in the summer total organic mass component of DVFs, corresponding to approximately 1-2% of the value of the annual PM2.5 NAAQS of 15 microg/m3. Spatial variations in the ozone and PM2.5 differences also reveal that the impacts of different biogenic emission estimates on ozone and PM2.5 levels are dependent on ambient levels of anthropogenic emissions.

  12. Improved MEGAN predictions of biogenic isoprene in the contiguous United States

    Science.gov (United States)

    Wang, Peng; Schade, Gunnar; Estes, Mark; Ying, Qi

    2017-01-01

    Isoprene emitted from biogenic sources significantly contributes to ozone and secondary organic aerosol formation in the troposphere. The Model of Emissions of Gases and Aerosols from Nature (MEGAN) has been widely used to estimate isoprene emissions from local to global scales. However, previous studies have shown that MEGAN significantly over-predicts isoprene emissions in the contiguous United States (US). In this study, ambient isoprene concentrations in the US were simulated by the Community Multiscale Air Quality (CMAQ) model (v5.0.1) using biogenic emissions estimated by MEGAN v2.10 with several different gridded isoprene emission factor (EF) fields. Best isoprene predictions were obtained with the EF field based on the Biogenic Emissions Landcover Database v4 (BELD4) from US EPA for its Biogenic Emission Inventory System (BEIS) model v3.61 (MEGAN-BEIS361). A seven-month simulation (April to October 2011) of isoprene emissions with MEGAN-BEIS361 and ambient concentrations using CMAQ shows that observed spatial and temporal variations (both diurnal and seasonal) of isoprene concentrations can be well predicted at most non-urban monitors using isoprene emission estimation from the MEGAN-BEIS361 without significant biases. The predicted monthly average vertical column density of formaldehyde (HCHO), a reactive volatile organic compound with significant contributions from isoprene oxidation, generally agree with the spatial distribution of HCHO column density derived using satellite data collected by the Ozone Monitoring Instrument (OMI), although summer month vertical column densities in the southeast US were overestimated, which suggests that isoprene emission might still be overestimated in that region. The agreement between observation and prediction may be further improved if more accurate PAR values, such as those derived from satellite-based observations, were used in modeling the biogenic emissions.

  13. Effects of Spartina alterniflora invasion on biogenic elements in a subtropical coastal mangrove wetland.

    Science.gov (United States)

    Yu, Xiaoqing; Yang, Jun; Liu, Lemian; Tian, Yuan; Yu, Zheng

    2015-02-01

    The invasion by exotic cordgrass (Spartina alterniflora) has become one of the most serious and challenging environmental and ecological problems in coastal China because it can have adverse effects on local native species, thereby changing ecosystem processes, functions, and services. In this study, 300 surface sediments were collected from 15 stations in the Jiulong River Estuary, southeast China, across four different seasons, in order to reveal the spatiotemporal variability of biogenic elements and their influencing factors in the subtropical coastal mangrove wetland. The biogenic elements including carbon, nitrogen, and sulfur (C, N, and S) were determined by an element analyzer, while the phosphorus (P) was determined by a flow injection analyzer. The concentrations of biogenic elements showed no significant differences among four seasons except total phosphorus (TP); however, our ANOVA analyses revealed a distinct spatial pattern which was closely related with the vegetation type and tidal level. Values of total carbon (TC) and total nitrogen (TN) in the surface sediment of mangrove vegetation zones were higher than those in the cordgrass and mudflat zones. The concentrations of TC, TN, TP, and total sulfur (TS) in the high tidal zones were higher than those in the middle and low tidal zones. Redundancy analysis (RDA) revealed that tidal level, vegetation type, and season had some significant influence on the distribution of biogenic elements in the Jiulong River Estuary, by explaining 18.2, 7.7, and 4.9 % of total variation in the four biogenic elements, respectively. In conclusion, S. alterniflora invasion had substantial effects on the distributions of biogenic elements in the subtropical coastal wetland. If regional changes in the Jiulong River Estuary are to persist and much of the mangrove vegetation was to be replaced by cordgrass, there would be significant decreases on the overall storage of C and N in this coastal zone. Therefore, the native

  14. Enhanced SOA formation from mixed anthropogenic and biogenic emissions during the CARES campaign

    Directory of Open Access Journals (Sweden)

    J. E. Shilling

    2013-02-01

    Full Text Available The CARES campaign was conducted during June, 2010 in the vicinity of Sacramento, California to study aerosol formation and aging in a region where anthropogenic and biogenic emissions regularly mix. Here, we describe measurements from an Aerodyne High Resolution Aerosol Mass Spectrometer (AMS, an Ionicon Proton Transfer Reaction Mass Spectrometer (PTR-MS, and trace gas detectors (CO, NO, NOx deployed on the G-1 research aircraft to investigate ambient gas- and particle-phase chemical composition. AMS measurements showed that the particle phase is dominated by organic aerosol (OA (85% on average with smaller concentrations of sulfate (5%, nitrate (6% and ammonium (3% observed. PTR-MS data showed that isoprene dominated the biogenic volatile organic compound concentrations (BVOCs, with monoterpene concentrations generally below the detection limit. Using two different metrics, median OA concentrations and the slope of plots of OA vs. CO concentrations (i.e., ΔOA/ΔCO, we contrast organic aerosol evolution on flight days with different prevailing meteorological conditions to elucidate the role of anthropogenic and biogenic emissions on OA formation. Airmasses influenced predominantly by biogenic emissions had median OA concentrations of 2.2 μg m−3 and near zero ΔOA/ΔCO. Those influenced predominantly by anthropogenic emissions had median OA concentrations of 4.7 μg m−3 and ΔOA/ΔCO ratios of 35–44 μg m−3 ppmv. But, when biogenic and anthropogenic emissions mixed, OA levels were enhanced, with median OA concentrations of 11.4 μg m−3 and ΔOA/ΔCO ratios of 77–157 μg m−3 ppmv. Taken together, our observations show that production of OA was enhanced when anthropogenic emissions from Sacramento mixed with isoprene-rich air from the foothills. After considering several anthropogenic/biogenic interaction mechanisms, we conclude that NOx concentrations

  15. Comparative study of biogenic and abiotic iron-containing materials

    Energy Technology Data Exchange (ETDEWEB)

    Cherkezova-Zheleva, Z., E-mail: zzhel@ic.bas.bg; Shopska, M., E-mail: shopska@ic.bas.bg; Paneva, D. [Bulgarian Academy of Sciences, Institute of Catalysis (Bulgaria); Kovacheva, D. [Bulgarian Academy of Sciences, Institute of General and Inorganic Chemistry (Bulgaria); Kadinov, G.; Mitov, I. [Bulgarian Academy of Sciences, Institute of Catalysis (Bulgaria)

    2016-12-15

    Series of iron-based biogenic materials prepared by cultivation of Leptothrix group of bacteria in different feeding media (Sphaerotilus-Leptothrix group of bacteria isolation medium, Adler, Lieske and silicon-iron-glucose-peptone) were studied. Control samples were obtained in the same conditions and procedures but the nutrition media were not infected with bacteria, i.e. they were sterile. Room and low temperature Mössbauer spectroscopy, powder X-ray diffraction (XRD), and infrared spectroscopy (IRS) were used to reveal the composition and physicochemical properties of biomass and respective control samples. Comparative analysis showed differences in their composition and dispersity of present phases. Sample composition included different ratio of nanodimensional iron oxyhydroxide and oxide phases. Relaxation phenomena such as superparamagnetism or collective magnetic excitation behaviour were registered for some of them. The experimental data showed that the biogenic materials were enriched in oxyhydroxides of high dispersion. Catalytic behaviour of a selected biomass and abiotic material were studied in the reaction of CO oxidation. In situ diffuse-reflectance (DR) IRS was used to monitor the phase transformations in the biomass and CO conversion.

  16. Biogenic non-methane hydrocarbons (NMHC). Nature`s contribution to regional and global atmospheric chemistry

    Energy Technology Data Exchange (ETDEWEB)

    Klockow, D.; Hoffman, T. [Inst. of Spectrochemistry and Applied Spectroscopy, Dortmund (Germany)

    1995-12-31

    Terrestrial vegetation provides an important source of volatile hydrocarbons, especially isoprene, monoterpenes and in addition possibly sesquiterpenes as well as oxygenated compounds. Although there exist considerable uncertainties in the estimation of the magnitude of these biogenic NMHC emissions, it is generally accepted that the majority of global NMHC release is from natural and not from anthropogenic sources. Taking into consideration the high reactivity of the mostly unsaturated biogenic emissions, their impact on tropospheric processes can be assumed to be of great importance. Together with anthropogenic NO{sub x} emissions, the highly reactive natural alkenes can act as precursors in photochemical oxidant formation and contribute to regional-scale air pollution. Their oxidation in the atmosphere and the subsequent gas-to-particle conversion of the products lead to the formation of organic aerosols. Because of the formation of phytotoxic compounds, the interaction of the biogenic hydrocarbons with ozone inside or outside the leaves and needles of plants has been suggested to play a role in forest decline. (author)

  17. Actinomycetes-mediated biogenic synthesis of metal and metal oxide nanoparticles: progress and challenges.

    Science.gov (United States)

    Manimaran, M; Kannabiran, K

    2017-06-01

    Actinomycetes-mediated biogenic synthesis of metal nanoparticles and their antimicrobial activities are well documented. Actinomycetes facilitate both intracellular and extracellular metal nanoparticles synthesis and are efficient candidates for the production of polydispersed, stable and ultra-small size metal nanoparticles. Secondary metabolites and new chemical entities derived from Actinomycetes have not been extensively studied for the synthesis of metal/metal oxide nanoparticles. The present review focuses on biogenic synthesis of metal nanoparticles from Actinomycetes and the scope for exploring Actinomycetes-derived compounds (enzymes, organics acids and bioactive compounds) as metal and metal oxide reducing agents for the synthesis of desired nanoparticles. This review also focuses on challenges faced in the applications of nanoparticles and the methods to synthesize biogenic metal nanoparticles with desired physiochemical properties such as ultra-small size, large surface to mass ratio, high reactivity etc. Methods to evade their toxicity and unique interactions with biological systems to improve their chance as an alternative therapeutic agent in medical and pharmaceutical industry are also discussed. © 2017 The Society for Applied Microbiology.

  18. Origin and variability in volatile organic compounds observed at an Eastern Mediterranean background site (Cyprus)

    Science.gov (United States)

    Debevec, Cécile; Sauvage, Stéphane; Gros, Valérie; Sciare, Jean; Pikridas, Michael; Stavroulas, Iasonas; Salameh, Thérèse; Leonardis, Thierry; Gaudion, Vincent; Depelchin, Laurence; Fronval, Isabelle; Sarda-Esteve, Roland; Baisnée, Dominique; Bonsang, Bernard; Savvides, Chrysanthos; Vrekoussis, Mihalis; Locoge, Nadine

    2017-09-01

    More than 7000 atmospheric measurements of over 60 C2 - C16 volatile organic compounds (VOCs) were conducted at a background site in Cyprus during a 1-month intensive field campaign held in March 2015. This exhaustive dataset consisted of primary anthropogenic and biogenic VOCs, including a wide range of source-specific tracers, and oxygenated VOCs (with various origins) that were measured online by flame ionization detection-gas chromatography and proton transfer mass spectrometry. Online submicron aerosol chemical composition was performed in parallel using an aerosol mass spectrometer. This study presents the high temporal variability in VOCs and their associated sources. A preliminary analysis of their time series was performed on the basis of independent tracers (NO, CO, black carbon), meteorological data and the clustering of air mass trajectories. Biogenic compounds were mainly attributed to a local origin and showed compound-specific diurnal cycles such as a daily maximum for isoprene and a nighttime maximum for monoterpenes. Anthropogenic VOCs as well as oxygenated VOCs displayed higher mixing ratios under the influence of continental air masses (i.e., western Asia), indicating that long-range transport significantly contributed to the VOC levels in the area. Source apportionment was then conducted on a database of 20 VOCs (or grouped VOCs) using a source receptor model. The positive matrix factorization and concentration field analyses were hence conducted to identify and characterize covariation factors of VOCs that were representative of primary emissions as well as chemical transformation processes. A six-factor PMF solution was selected, namely two primary biogenic factors (relative contribution of 43 % to the total mass of VOCs) for different types of emitting vegetation; three anthropogenic factors (short-lived combustion source, evaporative sources, industrial and evaporative sources; 21 % all together), identified as being either of local origin

  19. Quantification of Biogenic and Anthropogenic Hydrocarbons using a Commercial Gas Chromatograph - Ion Trap Mass Spectrometer at a Ground Site near Fort McKay, AB

    Science.gov (United States)

    Tokarek, T. W.; Osthoff, H. D.

    2014-12-01

    The extraction of fossil fuels from the Alberta oil sands has been the focus of considerable attention due to its association with sizeable emissions of a variety of atmospheric pollutants, the magnitude and impacts of which are currently poorly constrained by observations. In order to more reliably estimate the magnitude and impact of these emissions, an intensive air quality measurement campaign, called "Fort McMurray Oil Sands Strategic Investigation of Local Sources" (FOSSILS), was conducted in the summer of 2013 as part of the Alberta-Canada joint oil sands monitoring program (JOSM) to identify and quantify emissions and their transformations from the Alberta oil sands. The challenge is that the region is surrounded by boreal forest, which provides a substantial background of biogenic hydrocarbons during summer. In this presentation, measurements of volatile organic compounds (VOCs) at the AMS13 ground site near Fort McKay, Alberta, from Aug 17 to Sept 6, 2013 using a commercial Griffin 450 gas chromatograph equipped with ion trap mass spectrometric detection and Tenax preconcentration are described. The combination of retention information and electron impact mass spectral data allowed unambiguous identification and quantification of the major biogenic monoterpenes, e.g., α and β-pinene, limonene, camphene, and 3Δ-carene, and of many anthropogenically derived hydrocarbons. Mixing ratios of biogenic hydrocarbons varied with time of day, temperature, and solar radiation, with maxima typically occurring at night, rationalized by nocturnal mixing heights and low mixing ratios of the nocturnal oxidants ozone (O3) and the nitrate radical (NO3). In contrast, mixing ratios of anthropogenic VOCs, e.g., benzene, toluene, ethyl benzene, and o-, p-, and m-xylene (BTEX), strongly depended on meteorological conditions, i.e., local wind direction. During episodes with high BTEX abundance, many additional high molecular weight hydrocarbons were observed which were not

  20. Simultaneous analysis of perfluoroalkyl and polyfluoroalkyl substances including ultrashort-chain C2 and C3 compounds in rain and river water samples by ultra performance convergence chromatography.

    Science.gov (United States)

    Yeung, Leo W Y; Stadey, Christopher; Mabury, Scott A

    2017-11-03

    An analytical method using ultra performance convergence chromatography (UPC 2 ) coupled to a tandem mass spectrometer operated in negative electrospray mode was developed to measure perfluoroalkyl and polyfluoroalkyl substances (PFASs) including the ultrashort-chain PFASs (C2-C3). Compared to the existing liquid chromatography tandem mass spectrometry method using an ion exchange column, the new method has a lower detection limit (0.4pg trifluoroacetate (TFA) on-column), narrower peak width (3-6s), and a shorter run time (8min). Using the same method, different classes of PFASs (e.g., perfluoroalkyl sulfonates (PFSAs) and perfluorinated carboxylates (PFCAs), perfluorinated phosphonates (PFPAs) and phosphinates (PFPiAs), polyfluoroalkyl phosphate diesters (diPAPs)) can be measured in a single analysis. Rain (n=2) and river water (n=2) samples collected in Toronto, ON, were used for method validation and application. Results showed that short-chain PFAS (C2-C7 PFCAs and C4 PFSA) contributed to over 80% of the detectable PFASs in rain samples and the C2-C3 PFASs alone accounted for over 40% of the total. Reports on environmental levels of these ultrashort-chain PFASs are relatively scarce. Relatively large contribution of these ultrashort-chain PFASs to the total PFASs indicate the need to include the measurement of short-chain PFASs, especially C2 and C3 PFASs, in environmental monitoring. The sources of TFA and other short-chain PFASs in the environment are not entirely clear. The newly developed analytical method may help further investigation on the sources and the environmental levels of these ultrashort-chain PFASs. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Secondary biogeneous radiation of human organism

    International Nuclear Information System (INIS)

    Kuzin, A.M.; Surkenova, G.N.

    1999-01-01

    When studying samples of three types of tissues of alive healthy human organism (hands, surface of breast, hair) it is shown that hair permanently emit secondary biogeneous radiation (SBR) which may registered with biological detectors. The hypothesis is suggested that natural background radiation permanently exciting biopolymers (proteins, nuclei acids) being present in alive organism in condensed state induces permanently present electromagnetic field of SBR which is vitally important for human organism. The field partly extends beyond the organism, where it is registered with sensitive biological detectors [ru

  2. Confocal Raman microscopy as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina)

    Science.gov (United States)

    Nehrke, G.; Nouet, J.

    2011-06-01

    Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusk shells) represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (∼300 nm). Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystallographic lattice.

  3. Identification and semi-quantification of biogenic organic nitrates in ambient particulate matters by UHPLC/ESI-MS

    Science.gov (United States)

    Li, Rui; Wang, Xinfeng; Gu, Rongrong; Lu, Chunying; Zhu, Fanping; Xue, Likun; Xie, Huijun; Du, Lin; Chen, Jianmin; Wang, Wenxing

    2018-03-01

    Particulate biogenic organic nitrates (PBONs) are important components of secondary organic aerosols and play an important role in the tropospheric atmosphere chemistry. However, the concentrations and the chemistry of PBONs remain poorly understood due to the lack of accurate measurement techniques on specific organic nitrates. In this study, ultra high performance liquid chromatography/electrospray mass spectrometry was applied in detection of individual PBONs in ambient atmosphere. Total five kinds of PBONs were identified in PM2.5 samples collected in urban Ji'nan in spring according to characteristic fragments of NO2, NO3, HNO3, CO2, and H2O, including monoterpene hydroxyl nitrate (MW = 215, MHN215), pinene keto nitrate (MW = 229, PKN229), limonene di-keto nitrate (MW = 247, LDKN247), oleic acid keto nitrate (MW = 359, OAKN359), and oleic acid hydroxyl nitrate (MW = 361, OAHN361). Among them, three kinds of PBONs originated from biogenic volatile organic compounds of pinene and limonene and two kinds of PBONs came from chemical conversion of oleic acid. The concentrations of these PBONs were roughly quantified with surrogate standards of (1R,2R,5R)-(+)-2-hydroxy-3-pinanone and ricinoleic acid. The average concentrations of MHN215, PKN229, LDKN247, OAKN359, and OAHN361 were 111.6 ± 23.0, 93.1 ± 49.6, 55.3 ± 7.4, 23.4 ± 14.5, 36.8 ± 18.3 ng m-3, respectively. The total concentration of these PBONs was 325.4 ± 116.7 ng m-3, contributing to 1.64 ± 0.34‰ of PM2.5.

  4. The Role of Biogenic and Anthropogenic Hydrocarbons in Aging of Atmospheric Soot

    Science.gov (United States)

    Khalizov, A. F.; Qiu, C.; Lin, Y.; Ma, Y.; Wang, L.; Zhang, R.

    2012-12-01

    Atmospheric soot is often found to be internally mixed with other aerosol constituents, yet the processes responsible for the soot aging are not well understood. We have conducted a systematic study on the role of several representative biogenic and anthropogenic volatile organic compounds (VOCs), including monoterpenes and aromatics, in atmospheric aging of combustion soot. Aging experiments were conducted in a fluoropolymer chamber on size-classified soot aerosols in the presence of a VOC and an oxidant, either ozone or photolytically generated hydroxyl radical (OH). The evolution in the aging state of soot was monitored from measurements of the particle mobility size and mass, which were used to derive information about particle effective density, dynamic shape factor, and coating thickness. When exposed to VOC and oxidant, soot particles promptly gain mass due to condensation of low-volatility and partitioning of semi-volatile VOC oxidation products. Depending on the VOC, the increase in the particle mass is accompanied by an increase or a decrease in the particle mobility diameter. In either case, the effective density of coated soot particles increases during aging because the condensed material fills in the voids of fractal soot aggregates, forcing their restructuring. The latter is confirmed by thermal denuding experiments, which show an increase in the effective density for soot that was first aged and then heated to remove the coating from the soot core. Hygroscopic and optical properties of soot are significantly altered by aging. Upon humidification, the coating absorbs water, increasing in volume and causing an additional restructuring of soot aggregates. Coated particles are sufficiently hygroscopic to activate to cloud droplets at atmospherically relevant water supersaturations. Aged soot shows stronger light absorption and scattering, with an enhancement magnitude depending on the coating thickness and nature of the coating precursor. The rate of

  5. Biogenic-amine acetylation: an additional function of the N-acetyltransferase from Fasciola hepatica.

    Science.gov (United States)

    Aisien, S O; Walter, R D

    1993-01-01

    The previously described polyamine N-acetyltransferase from Fasciola hepatica has been observed to have an additional function, the acetylation of biogenic amines. The activities for biogenic amines, diamines and polyamines were in a constant ratio throughout the purification process. Biogenic amines found to be substrates for the enzyme included tyramine, tryptamine, beta-phenylethylamine and histamine, with Km values of 0.12 mM, 0.26 mM, 0.30 mM and 0.76 mM respectively. Octopamine, 5-hydroxytryptamine and alpha-phenylethylamine were also acceptable as substrates, though to a lesser degree. The optimum pH for biogenic-amine acetylation was 7.5, and CoA was inhibitory to the process, with a Ki of 5.5 microM. N-Acetylation appears to play a major role in the amine metabolism of this trematode. We presume that acetylation represents the process by which the parasite inactivates excess amines. PMID:8489501

  6. Enhancement of Biogenic Coalbed Methane Production and Back Injection of Coalbed Methane Co-Produced Water

    Energy Technology Data Exchange (ETDEWEB)

    Song Jin

    2007-05-31

    Biogenic methane is a common constituent in deep subsurface environments such as coalbeds and oil shale beds. Coalbed methane (CBM) makes significant contributions to world natural gas industry and CBM production continues to increase. With increasing CBM production, the production of CBM co-produced water increases, which is an environmental concern. This study investigated the feasibility in re-using CBM co-produced water and other high sodic/saline water to enhance biogenic methane production from coal and other unconventional sources, such as oil shale. Microcosms were established with the selected carbon sources which included coal, oil shale, lignite, peat, and diesel-contaminated soil. Each microcosm contained either CBM coproduced water or groundwater with various enhancement and inhibitor combinations. Results indicated that the addition of nutrients and nutrients with additional carbon can enhance biogenic methane production from coal and oil shale. Methane production from oil shale was much greater than that from coal, which is possibly due to the greater amount of available Dissolved Organic Carbon (DOC) from oil shale. Inconclusive results were observed from the other sources since the incubation period was too low. WRI is continuing studies with biogenic methane production from oil shale.

  7. Removal of colloidal biogenic selenium from wastewater.

    Science.gov (United States)

    Staicu, Lucian C; van Hullebusch, Eric D; Oturan, Mehmet A; Ackerson, Christopher J; Lens, Piet N L

    2015-04-01

    Biogenic selenium, Se(0), has colloidal properties and thus poses solid-liquid separation problems, such as poor settling and membrane fouling. The separation of Se(0) from the bulk liquid was assessed by centrifugation, filtration, and coagulation-flocculation. Se(0) particles produced by an anaerobic granular sludge are normally distributed, ranging from 50 nm to 250 nm, with an average size of 166±29 nm and a polydispersity index of 0.18. Due to its nanosize range and protein coating-associated negative zeta potential (-15 mV to -23 mV) between pH 2 and 12, biogenic Se(0) exhibits colloidal properties, hampering its removal from suspension. Centrifugation at different centrifugal speeds achieved 22±3% (1500 rpm), 73±2% (3000 rpm) and 91±2% (4500 rpm) removal. Separation by filtration through 0.45 μm filters resulted in 87±1% Se(0) removal. Ferric chloride and aluminum sulfate were used as coagulants in coagulation-flocculation experiments. Aluminum sulfate achieved the highest turbidity removal (92±2%) at a dose of 10(-3) M, whereas ferric chloride achieved a maximum turbidity removal efficiency of only 43±4% at 2.7×10(-4) M. Charge repression plays a minor role in particle neutralization. The sediment volume resulting from Al2(SO3)4 treatment is three times larger than that produced by FeCl3. Copyright © 2014 Elsevier Ltd. All rights reserved.

  8. Incidence of biogenic amines in foods implications for the Gambia ...

    African Journals Online (AJOL)

    Amines are found in food. Biogenic amines are a class of amines, which result from decarboxylation. They are food quality indicators. Health-wise biogenic amines play positive roles and have adverse effects as well; they are a public health concern. Certain conditions make it possible for them to be produced. These could ...

  9. Uncertainty in biogenic isoprene emissions and its impacts on tropospheric chemistry in East Asia

    International Nuclear Information System (INIS)

    Han, K.M.; Park, R.S.; Kim, H.K.; Woo, J.H.; Kim, J.; Song, C.H.

    2013-01-01

    In this study, the accuracy of biogenic isoprene emission fluxes over East Asia during two summer months (July and August) was examined by comparing two tropospheric HCHO columns (Ω HCHO ) obtained from the SCIAMACHY sensor and the Community Multi-scale Air Quality (CMAQ v4.7.1) model simulations, using three available biogenic isoprene emission inventories over East Asia: i) GEIA, ii) MEGAN and iii) MOHYCAN. From this comparative analysis, the tropospheric HCHO columns from the CMAQ model simulations, using the MEGAN and MOHYCAN emission inventories (Ω CMAQ, MEGAN and Ω CMAQ, MOHYCAN ), were found to agree well with the tropospheric HCHO columns from the SCIAMACHY observations (Ω SCIA ). Secondly, the propagation of such uncertainties in the biogenic isoprene emission fluxes to the levels of atmospheric oxidants (e.g., OH and HO 2 ) and other atmospheric gaseous/particulate species over East Asia during the two summer months was also investigated. As the biogenic isoprene emission fluxes decreased from the GEIA to the MEGAN emission inventories, the levels of OH radicals increased by factors of 1.39 and 1.75 over Central East China (CEC) and South China, respectively. Such increases in the OH radical mixing ratios subsequently influence the partitioning of HO y species. For example, the HO 2 /OH ratios from the CMAQ model simulations with GEIA isoprene emissions were 2.7 times larger than those from the CMAQ model simulations based on MEGAN isoprene emissions. The large HO 2 /OH ratios from the CMAQ model simulations with the GEIA biogenic emission were possibly due to the overestimation of GEIA biogenic isoprene emissions over East Asia. It was also shown that such large changes in HO x radicals created large differences on other tropospheric compounds (e.g., NO y chemistry) over East Asia during the summer months. - Highlights: • GEIA isoprene emissions were possibly overestimated over East Asia. • Using MEGAN or MOHYCAN emissions in CMAQ well captured

  10. Impact of regional transport on the anthropogenic and biogenic secondary organic aerosols in the Los Angeles Basin

    Science.gov (United States)

    Heo, Jongbae; de Foy, Benjamin; Olson, Michael R.; Pakbin, Payam; Sioutas, Constantinos; Schauer, James J.

    2015-02-01

    This manuscript explores the role of regional transport on anthropogenic and biogenic secondary organic carbon (SOC) concentrations in ambient fine particulate (PM2.5) organic carbon (OC) in the Los Angeles (LA) Basin. Daily organic molecular markers, water soluble organic carbon (WSOC), OC, and elemental carbon (EC) measurements from May 2009 through April 2010 at a central site in downtown LA, and results from a positive matrix factorization (PMF) analysis of these data, were used to understand the role of regional transport on SOC concentrations. A backward-trajectory analysis, coupled with the measurements and estimated source contributions, were used to evaluate the origins of SOC aerosols. Anthropogenic and biogenic SOC were identified in central LA over the study period, together contributing 40% of the annual average PM2.5 OC mass. There were distinct seasonal variations, with high contributions of anthropogenic SOC in summer, and high contributions of biogenic SOC in spring. The back-trajectory analysis, coupled with daily source contributions of SOC and organic compounds as indicators, allowed us to identify potential source locations and dominant meteorological conditions contributing to elevated SOC at the measurement site. The results show that air mass movements from the Pacific Ocean are associated with higher contributions of anthropogenic SOC to the PM2.5 OC in downtown LA, suggesting that the combination of local meteorological conditions and local anthropogenic emissions led to an increase in the anthropogenic SOC. In contrast, air masses passing over the Central Valley and forested areas where there are biogenic hydrocarbon emissions are closely associated with higher contributions of biogenic SOC in the region. The study emphasizes that higher anthropogenic SOC contributions are due to the combination of local emissions with humidity air from the ocean, and that higher biogenic SOC contributions are impacted by transport of pollutants from

  11. Large biogenic contribution to boundary layer O3-CO regression slope in summer

    Science.gov (United States)

    Cheng, Ye; Wang, Yuhang; Zhang, Yuzhong; Chen, Gao; Crawford, James H.; Kleb, Mary M.; Diskin, Glenn S.; Weinheimer, Andrew J.

    2017-07-01

    Strong correlation between O3 and CO was observed during the Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER-AQ) aircraft experiment in July 2011 over the Washington-Baltimore area. The observed correlation does not vary significantly with time or altitude in the boundary layer. The observations are simulated well by a regional chemical transport model. We analyze the model results to understand the factors contributing to the observed O3-CO regression slope, which has been used in past studies to estimate the anthropogenic O3 production amount. We trace separately four different CO sources: primary anthropogenic emissions, oxidation of anthropogenic volatile organic compounds, oxidation of biogenic isoprene, and transport from the lateral and upper model boundaries. Modeling analysis suggests that the contribution from biogenic isoprene oxidation to the observed O3-CO regression slope is as large as that from primary anthropogenic CO emissions. As a result of decrease of anthropogenic primary CO emissions during the past decades, biogenic CO from oxidation of isoprene is increasingly important. Consequently, observed and simulated O3-CO regression slopes can no longer be used directly with an anthropogenic CO emission inventory to quantify anthropogenic O3 production over the United States. The consistent enhancement of O3 relative to CO observed in the boundary layer, as indicated by the O3-CO regression slope, provides a useful constraint on model photochemistry and emissions.

  12. Validation of a method for the analysis of biogenic amines: histamine instability during wine sample storage.

    Science.gov (United States)

    Bach, Benoit; Le Quere, Stephanie; Vuchot, Patrick; Grinbaum, Magali; Barnavon, Laurent

    2012-06-30

    This paper reports on the development of an optimized method for the simultaneous analysis of eight biogenic amines (histamine, methylamine, ethylamine, tyramine, putrescine, cadaverine, phenethylamine, and isoamylamine). The analytical method thus proposed has the following advantages: the easy derivatization of wine, the quantification of biogenic amines and a complete degradation of excess derivatization reagent during sample preparation in order to preserve the column. It consists in reversed phase separation by HPLC and UV-vis detection of the aminoenones formed by the reaction of amino compounds with the derivatization reagent diethyl ethoxymethylenemalonate (DEEMM). The usefulness of this technique was confirmed by an alternative oenological analytical method for the validation, quality control and uncertainty assessment (OIV Oeno 10/2005). The method was validated and proposed as a reference method to the International Organization of Vine and Wine (OIV). As a specific application of the proposed method, the biogenic amine content of Rhône valley wines was investigated. Copyright © 2011 Elsevier B.V. All rights reserved.

  13. Fungal spores overwhelm biogenic organic aerosols in a midlatitudinal forest

    Directory of Open Access Journals (Sweden)

    C. Zhu

    2016-06-01

    Full Text Available Both primary biological aerosol particles (PBAPs and oxidation products of biogenic volatile organic compounds (BVOCs contribute significantly to organic aerosols (OAs in forested regions. However, little is known about their relative importance in diurnal timescales. Here, we report biomarkers of PBAP and secondary organic aerosols (SOAs for their diurnal variability in a temperate coniferous forest in Wakayama, Japan. Tracers of fungal spores, trehalose, arabitol and mannitol, showed significantly higher levels in nighttime than daytime (p < 0.05, resulting from the nocturnal sporulation under near-saturated relative humidity. On the contrary, BVOC oxidation products showed higher levels in daytime than nighttime, indicating substantial photochemical SOA formation. Using tracer-based methods, we estimated that fungal spores account for 45 % of organic carbon (OC in nighttime and 22 % in daytime, whereas BVOC oxidation products account for 15 and 19 %, respectively. To our knowledge, we present for the first time highly time-resolved results that fungal spores overwhelmed BVOC oxidation products in contributing to OA especially in nighttime. This study emphasizes the importance of both PBAPs and SOAs in forming forest organic aerosols.

  14. Analysis of irradiated biogenic amines by computational chemistry and spectroscopy

    International Nuclear Information System (INIS)

    Oliveira, Jorge L.S.P.; Borges Junior, Itamar; Cardozo, Monique; Souza, Stefania P.; Lima, Antonio L.S.; Lima, Keila S.C.

    2011-01-01

    Biogenic Amines (B A) are nitrogenous compounds able to cause food poisoning. In this work, we studied the tyramine, one of the most common BA present in foods by combining experimental measured IR (Infrared) and GC/MS (Gas Chromatograph / Mass Spectrometry) spectra and computational quantum chemistry. Density Functional Theory (DFT) and the Deformed Atoms in Molecules (DMA) method was used to compute the partition the electronic densities in a chemically-intuitive way and electrostatic potentials of molecule to identify the acid and basic sites. Trading pattern was irradiated using a Cs 137 radiator, and each sample was identified by IR and GC/MS. Calculated and experimental IR spectra were compared. We observed that ionizing gamma irradiation was very effective in decreasing the population of standard amine, resulting in fragments that could be rationalized through the quantum chemistry calculations. In particular, we could locate the acid and basic sites of both molecules and identify possible sites of structural weaknesses, which allowed to propose mechanistic schemes for the breaking of chemical bonds by the irradiation. Moreover, from this work we hope it will be also possible to properly choose the dose of gamma irradiation which should be provided to eliminate each type of contamination. (author)

  15. Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory; determination of 86 volatile organic compounds in water by gas chromatography/mass spectrometry, including detections less than reporting limits

    Science.gov (United States)

    Connor, Brooke F.; Rose, Donna L.; Noriega, Mary C.; Murtaugh, Lucinda K.; Abney, Sonja R.

    1998-01-01

    This report presents precision and accuracy data for volatile organic compounds (VOCs) in the nanogram-per-liter range, including aromatic hydrocarbons, reformulated fuel components, and halogenated hydrocarbons using purge and trap capillary-column gas chromatography/mass spectrometry. One-hundred-four VOCs were initially tested. Of these, 86 are suitable for determination by this method. Selected data are provided for the 18 VOCs that were not included. This method also allows for the reporting of semiquantitative results for tentatively identified VOCs not included in the list of method compounds. Method detection limits, method performance data, preservation study results, and blank results are presented. The authors describe a procedure for reporting low-concentration detections at less than the reporting limit. The nondetection value (NDV) is introduced as a statistically defined reporting limit designed to limit false positives and false negatives to less than 1 percent. Nondetections of method compounds are reported as ?less than NDV.? Positive detections measured at less than NDV are reported as estimated concentrations to alert the data user to decreased confidence in accurate quantitation. Instructions are provided for analysts to report data at less than the reporting limits. This method can support the use of either method reporting limits that censor detections at lower concentrations or the use of NDVs as reporting limits. The data-reporting strategy for providing analytical results at less than the reporting limit is a result of the increased need to identify the presence or absence of environmental contaminants in water samples at increasingly lower concentrations. Long-term method detection limits (LTMDLs) for 86 selected compounds range from 0.013 to 2.452 micrograms per liter (?g/L) and differ from standard method detection limits (MDLs) in that the LTMDLs include the long-term variance of multiple instruments, multiple operators, and multiple

  16. Total balance of biogenic fuels for thermal uses; Ganzheitliche Bilanzierung verschiedener biogener Festbrennstoffe zur thermischen Nutzung

    Energy Technology Data Exchange (ETDEWEB)

    Becher, S.; Kaltschmitt, M. [Stuttgart Univ. (Germany). Inst. fuer Energiewirtschaft und Rationelle Energieanwendung (IER)

    1996-12-31

    In this situation of unfavourable energy price levels, the use of biogenic fuels for power supply can be recommended only if it serves to reduce environmental pollution. Against this background and on the basis of a primary energy balance, the authors attempted a total balance of selected enfironmental effects (global heating and acidification potential) of biomass use as compared to fossil fuel combustion. (orig) [Deutsch] ie Nutzung biogener Festbrennstoffe zur Energienachfragedeckung ist bei dem gegenwaertigen unguenstigen Energiepreisniveau nur dann zu rechtfertigen, wenn es durch die Biomassenutzung zu einer Reduzierung der energiebedingten Umwelteffekte kommt. Vor disem Hintergrund werden ausgehend von der Primaerenergiebilanz ausgewaehlte Umwelteffekte (d.h. das Treibhaus- und das Versauerungspotential) einer Biomassenutzung im Vergleich zu einer Nutzung fossiler Energietraeger ganzheitlich bilanziert. Die wesentlichen Ergebnisse werden zusammengefasst und interpretiert. (orig)

  17. EVAPORATION: a new vapour pressure estimation methodfor organic molecules including non-additivity and intramolecular interactions

    Science.gov (United States)

    Compernolle, S.; Ceulemans, K.; Müller, J.-F.

    2011-09-01

    We present EVAPORATION (Estimation of VApour Pressure of ORganics, Accounting for Temperature, Intramolecular, and Non-additivity effects), a method to predict (subcooled) liquid pure compound vapour pressure p0 of organic molecules that requires only molecular structure as input. The method is applicable to zero-, mono- and polyfunctional molecules. A simple formula to describe log10p0(T) is employed, that takes into account both a wide temperature dependence and the non-additivity of functional groups. In order to match the recent data on functionalised diacids an empirical modification to the method was introduced. Contributions due to carbon skeleton, functional groups, and intramolecular interaction between groups are included. Molecules typically originating from oxidation of biogenic molecules are within the scope of this method: aldehydes, ketones, alcohols, ethers, esters, nitrates, acids, peroxides, hydroperoxides, peroxy acyl nitrates and peracids. Therefore the method is especially suited to describe compounds forming secondary organic aerosol (SOA).

  18. Controlled cobalt doping in biogenic magnetite nanoparticles

    Science.gov (United States)

    Byrne, J. M.; Coker, V. S.; Moise, S.; Wincott, P. L.; Vaughan, D. J.; Tuna, F.; Arenholz, E.; van der Laan, G.; Pattrick, R. A. D.; Lloyd, J. R.; Telling, N. D.

    2013-01-01

    Cobalt-doped magnetite (CoxFe3 −xO4) nanoparticles have been produced through the microbial reduction of cobalt–iron oxyhydroxide by the bacterium Geobacter sulfurreducens. The materials produced, as measured by superconducting quantum interference device magnetometry, X-ray magnetic circular dichroism, Mössbauer spectroscopy, etc., show dramatic increases in coercivity with increasing cobalt content without a major decrease in overall saturation magnetization. Structural and magnetization analyses reveal a reduction in particle size to less than 4 nm at the highest Co content, combined with an increase in the effective anisotropy of the magnetic nanoparticles. The potential use of these biogenic nanoparticles in aqueous suspensions for magnetic hyperthermia applications is demonstrated. Further analysis of the distribution of cations within the ferrite spinel indicates that the cobalt is predominantly incorporated in octahedral coordination, achieved by the substitution of Fe2+ site with Co2+, with up to 17 per cent Co substituted into tetrahedral sites. PMID:23594814

  19. Controlled cobalt doping in biogenic magnetite nanoparticles.

    Science.gov (United States)

    Byrne, J M; Coker, V S; Moise, S; Wincott, P L; Vaughan, D J; Tuna, F; Arenholz, E; van der Laan, G; Pattrick, R A D; Lloyd, J R; Telling, N D

    2013-06-06

    Cobalt-doped magnetite (CoxFe3 -xO4) nanoparticles have been produced through the microbial reduction of cobalt-iron oxyhydroxide by the bacterium Geobacter sulfurreducens. The materials produced, as measured by superconducting quantum interference device magnetometry, X-ray magnetic circular dichroism, Mössbauer spectroscopy, etc., show dramatic increases in coercivity with increasing cobalt content without a major decrease in overall saturation magnetization. Structural and magnetization analyses reveal a reduction in particle size to less than 4 nm at the highest Co content, combined with an increase in the effective anisotropy of the magnetic nanoparticles. The potential use of these biogenic nanoparticles in aqueous suspensions for magnetic hyperthermia applications is demonstrated. Further analysis of the distribution of cations within the ferrite spinel indicates that the cobalt is predominantly incorporated in octahedral coordination, achieved by the substitution of Fe(2+) site with Co(2+), with up to 17 per cent Co substituted into tetrahedral sites.

  20. Biogenic amines degradation by microorganisms isolated from cheese

    Directory of Open Access Journals (Sweden)

    Irena Butor

    2017-01-01

    Full Text Available The aim of this study was the isolation and characterization of microorganisms able to degrade biogenic amines and their identification. Individual microorganisms were obtained by isolation from commercially available foodstuffs and food produced in the technological laboratories of Faculty of Technology, Tomas Bata University in Zlín and subsequently identified by MALDI-TOF MS. The results of MALDI-TOF MS identification were verified by 16S rRNA sequenation. In this work was studied the ability of 5 bacterial strains positive to biogenic amines degradation isolated from dairy products to decrease biogenic amines content in vitro and quantified reduction in the concentration of biogenic amines tryptamine, β-phenylethylamine, putrescine, cadaverine, histamine and tyramine. The level of degradation (decrease of biogenic amines was determined on the base of the ability to grow in media with biogenic amines as the sole source carbon and nitrogen. The isolated strains with the ability of degradation of one or more biogenic amines were cultured in medium supplemented with relevant biogenic amines, the media derivatized with dansyl chloride and these amines separated by HPLC at a wavelength of 254 nm. From five tested strains identified as Bacillus subtilis, Bacillus pumilus, Enterobacter cloacae, Rhizobium radiobacter and Acinetobacter pitii, isolated from gouda type cheese, the greatest ability of degradation was observed in Bacillus subtilis, which was capable to degrade almost all amount of histamine, cadaverine and putrescine. Other four strains showed a lower rate of degradation than Bacillus subtilis, but the ability to degrade biogenic amines with these microorganisms was still significant.

  1. Biogenic Sulfur in the Siple Dome Ice Core, Version 1

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set is a continuous, high-resolution record of biogenic sulfur (methanesulfonate, known as MSA and CH3SO3-) in the 1000 m deep Siple Dome A (SDMA) core,...

  2. Biogenic hydrocarbon emission estimates for North Central Texas

    Energy Technology Data Exchange (ETDEWEB)

    Wiedinmyer, C.; Wade Strange, I.; Allen, D.T. [University of Texas at Austin (United States). Dept. of Chemical Engineering; Estes, M. [Texas Natural Resource Conservation Commission, Austin, TX (United States); Yarwood, G. [ENVIRON International Corporation, Novato, CA (United States)

    2000-07-01

    Biogenic hydrocarbon emissions were estimated for a 37 county region in North Central Texas. The estimates were based on several sources of land use/land cover data that were combined using geographical information systems. Field studies were performed to collect species and tree diameter distribution data. These data were used to estimate biomass densities and species distributions for each of the land use and cover classifications. VOC emissions estimates for the domain were produced using the new land use/land cover data and a biogenic emissions model. These emissions were more spatially resolved and a factor of 2 greater in magnitude than those calculated based on the biogenic emissions landuse database (BELD) commonly used in biogenic emissions models. (author)

  3. Quantifying the Global Marine Biogenic Nitrogen Oxides Emissions

    Science.gov (United States)

    Su, H.; Wang, S.; Lin, J.; Hao, N.; Poeschl, U.; Cheng, Y.

    2017-12-01

    Nitrogen oxides (NOx) are among the most important molecules in atmospheric chemistry and nitrogen cycle. The NOx over the ocean areas are traditionally believed to originate from the continental outflows or the inter-continental shipping emissions. By comparing the satellite observations (OMI) and global chemical transport model simulation (GEOS-Chem), we suggest that the underestimated modeled atmospheric NO2 columns over biogenic active ocean areas can be possibly attributed to the biogenic source. Nitrification and denitrification in the ocean water produces nitrites which can be further reduced to NO through microbiological processes. We further report global distributions of marine biogenic NO emissions. The new added emissions improve the agreement between satellite observations and model simulations over large areas. Our model simulations manifest that the marine biogenic NO emissions increase the atmospheric oxidative capacity and aerosol formation rate, providing a closer link between atmospheric chemistry and ocean microbiology.

  4. Biogenic iron mineralization at Iron Mountain, CA with implications for detection with the Mars Curiosity rover

    Science.gov (United States)

    Williams, Amy J.; Sumner, Dawn Y.; Alpers, Charles N.; Campbell, Kate M.; Nordstrom, D. Kirk

    2014-01-01

    (Introduction) Microbe-mineral interactions and biosignature preservation in oxidized sulfidic ore bodies (gossans) are prime candidates for astrobiological study. Such oxidized iron systems have been proposed as analogs for some Martian environments. Recent studies identified microbial fossils preserved as mineral-coated filaments. This study documents microbially-mediated mineral biosignatures in hydrous ferric oxide (HFO) and ferric oxyhydroxysulfates (FOHS) in three environments at Iron Mountain, CA. We investigated microbial community preservation via HFO and FOHS precipitation and the formation of filamentous mineral biosignatures. These environments included 1) actively precipitating (1000's yrs), naturally weathered HFO from in situ gossan, and 3) remobilized iron deposits, which contained lithified clastics and zones of HFO precipitate. We used published biogenicity criteria as guidelines to characterize the biogenicity of mineral filaments. These criteria included A) an actively precipitating environment where microbes are known to be coated in minerals, B) presence of extant microbial communities with carbon signatures, C) structures observable as a part of the host rock, and D) biological morphology, including cellular lumina, multiple member population, numerous taxa, variable and 3-D preservation, biological size ranges, uniform diameter, and evidence of flexibility. This study explores the relevance and detection of these biosignatures to possible Martian biosignatures. Similar filamentous biosignatures are resolvable by the Mars Hand Lens Imager (MAHLI) onboard the Mars Science Laboratory (MSL) rover, Curiosity, and may be identifiable as biogenic if present on Mars.

  5. Comparison of regional and global land cover products and the implications for biogenic emission modeling.

    Science.gov (United States)

    Huang, Ling; McDonald-Buller, Elena; McGaughey, Gary; Kimura, Yosuke; Allen, David T

    2015-10-01

    Accurate estimates of biogenic emissions are required for air quality models that support the development of air quality management plans and attainment demonstrations. Land cover characterization is an essential driving input for most biogenic emissions models. This work contrasted the global Moderate Resolution Imaging Spectroradiometer (MODIS) land cover product against a regional land cover product developed for the Texas Commissions on Environmental Quality (TCEQ) over four climate regions in eastern Texas, where biogenic emissions comprise a large fraction of the total inventory of volatile organic compounds (VOCs) and land cover is highly diverse. The Model of Emissions of Gases and Aerosols from Nature (MEGAN) was utilized to investigate the influences of land cover characterization on modeled isoprene and monoterpene emissions through changes in the standard emission potential and emission activity factor, both separately and simultaneously. In Central Texas, forest coverage was significantly lower in the MODIS land cover product relative to the TCEQ data, which resulted in substantially lower estimates of isoprene and monoterpene emissions by as much as 90%. Differences in predicted isoprene and monoterpene emissions associated with variability in land cover characterization were primarily caused by differences in the standard emission potential, which is dependent on plant functional type. Photochemical modeling was conducted to investigate the effects of differences in estimated biogenic emissions associated with land cover characterization on predicted ozone concentrations using the Comprehensive Air Quality Model with Extensions (CAMx). Mean differences in maximum daily average 8-hour (MDA8) ozone concentrations were 2 to 6 ppb with maximum differences exceeding 20 ppb. Continued focus should be on reducing uncertainties in the representation of land cover through field validation. Uncertainties in the estimation of biogenic emissions associated with

  6. Urban stress-induced biogenic VOC emissions and SOA-forming potentials in Beijing

    Directory of Open Access Journals (Sweden)

    A. Ghirardo

    2016-03-01

    Full Text Available Trees can significantly impact the urban air chemistry by the uptake and emission of reactive biogenic volatile organic compounds (BVOCs, which are involved in ozone and particle formation. Here we present the emission potentials of "constitutive" (cBVOCs and "stress-induced" BVOCs (sBVOCs from the dominant broadleaf woody plant species in the megacity of Beijing. Based on the municipal tree census and cuvette BVOC measurements on leaf level, we built an inventory of BVOC emissions, and assessed the potential impact of BVOCs on secondary organic aerosol (SOA formation in 2005 and 2010, i.e., before and after realizing the large tree-planting program for the 2008 Olympic Games. We found that sBVOCs, such as fatty acid derivatives, benzenoids, and sesquiterpenes, constituted a significant fraction ( ∼  40 % of the total annual BVOC emissions, and we estimated that the overall annual BVOC budget may have doubled from  ∼  4.8  ×  109 g C year−1 in 2005 to  ∼  10.3  ×  109 g C year−1 in 2010 due to the increase in urban greening, while at the same time the emission of anthropogenic VOCs (AVOCs decreased by 24 %. Based on the BVOC emission assessment, we estimated the biological impact on SOA mass formation potential in Beijing. Constitutive and stress-induced BVOCs might produce similar amounts of secondary aerosol in Beijing. However, the main contributors of SOA-mass formations originated from anthropogenic sources (> 90 %. This study demonstrates the general importance to include sBVOCs when studying BVOC emissions. Although the main problems regarding air quality in Beijing still originate from anthropogenic activities, the present survey suggests that in urban plantation programs, the selection of low-emitting plant species has some potential beneficial effects on urban air quality.

  7. First Biogenic VOC Flux Results from the UCI Fluxtron Plant Chamber Facility

    Science.gov (United States)

    Seco, R.; Gu, D.; Joo, E.; Nagalingam, S.; Aristizabal, B. H.; Basu, C.; Kim, S.; Guenther, A. B.

    2017-12-01

    Atmospheric biogenic volatile organic compounds (BVOCs) have key environmental, ecological and biological roles, and can influence atmospheric chemistry, secondary aerosol formation, and regional climate. Quantifying BVOC emission rates and their impact on atmospheric chemistry is one of the greatest challenges with respect to predicting future air pollution in the context of a changing climate. A new facility, the UCI Fluxtron, has been developed at the Department of Earth System Science at the University of California Irvine to study the response of BVOC emissions to extreme weather and pollution stress. The UCI Fluxtron is designed for automated, continuous measurement of plant physiology and multi-modal BVOC chemical analysis from multiple plants. It consists of two controlled-environment walk-in growth chambers that contain several plant enclosures, a gas make-up system to precisely control the composition (e.g., H2O, CO2, O3 and VOC concentrations) of the air entering each enclosure. A sample manifold with automated inlet switching is used for measurements with in-situ and real-time VOC analysis instruments: H2O, CO2 fluxes can be measured continually with an infrared gas analyzer (IRGA) and BVOCs with a proton transfer reaction -time of flight- mass spectrometer (PTR-TOF-MS). Offline samples can also be taken via adsorbent cartridges to be analyzed in a thermal desorption gas chromatograph coupled to a TOF-MS detector. We present the first results of H2O, CO2 and BVOC fluxes, including the characterization and testing of the Fluxtron system. For example, measurements of young dragon tree (Paulownia elongata) individuals using whole-plant enclosures.

  8. Secondary organic aerosol origin in an urban environment: influence of biogenic and fuel combustion precursors.

    Science.gov (United States)

    Minguillón, M C; Pérez, N; Marchand, N; Bertrand, A; Temime-Roussel, B; Agrios, K; Szidat, S; van Drooge, B; Sylvestre, A; Alastuey, A; Reche, C; Ripoll, A; Marco, E; Grimalt, J O; Querol, X

    2016-07-18

    Source contributions of organic aerosol (OA) are still not fully understood, especially in terms of quantitative distinction between secondary OA formed from anthropogenic precursors vs. that formed from natural precursors. In order to investigate the OA origin, a field campaign was carried out in Barcelona in summer 2013, including two periods characterized by low and high traffic conditions. Volatile organic compound (VOC) concentrations were higher during the second period, especially aromatic hydrocarbons related to traffic emissions, which showed a marked daily cycle peaking during traffic rush hours, similarly to black carbon (BC) concentrations. Biogenic VOC (BVOC) concentrations showed only minor changes from the low to the high traffic period, and their intra-day variability was related to temperature and solar radiation cycles, although a decrease was observed for monoterpenes during the day. The organic carbon (OC) concentrations increased from the first to the second period, and the fraction of non-fossil OC as determined by (14)C analysis increased from 43% to 54% of the total OC. The combination of (14)C analysis and Aerosol Chemical Speciation Monitor (ACSM) OA source apportionment showed that the fossil OC was mainly secondary (>70%) except for the last sample, when the fossil secondary OC only represented 51% of the total fossil OC. The fraction of non-fossil secondary OC increased from 37% of total secondary OC for the first sample to 60% for the last sample. This enhanced formation of non-fossil secondary OA (SOA) could be attributed to the reaction of BVOC precursors with NOx emitted from road traffic (or from its nocturnal derivative nitrate that enhances night-time semi-volatile oxygenated OA (SV-OOA)), since NO2 concentrations increased from 19 to 42 μg m(-3) from the first to the last sample.

  9. Biogenic precipitation of manganese oxides and enrichment of heavy metals at acidic soil pH

    Science.gov (United States)

    Mayanna, Sathish; Peacock, Caroline L.; Schäffner, Franziska; Grawunder, Anja; Merten, Dirk; Kothe, Erika; Büchel, Georg

    2014-05-01

    The precipitation of biogenic Mn oxides at acidic pH is rarely reported and poorly understood, compared to biogenic Mn oxide precipitation at near neutral conditions. Here we identified and investigated the precipitation of biogenic Mn oxides in acidic soil, and studied their role in the retention of heavy metals, at the former uranium mining site of Ronneburg, Germany. The site is characterized by acidic pH, low carbon content and high heavy metal loads including rare earth elements. Specifically, the Mn oxides were present in layers identified by detailed soil profiling and within these layers pH varied from 4.7 to 5.1, Eh varied from 640 to 660 mV and there were enriched total metal contents for Ba, Ni, Co, Cd and Zn in addition to high Mn levels. Using electron microprobe analysis, synchrotron X-ray diffraction and X-ray absorption spectroscopy, we identified poorly crystalline birnessite (δ-MnO2) as the dominant Mn oxide in the Mn layers, present as coatings covering and cementing quartz grains. With geochemical modelling we found that the environmental conditions at the site were not favourable for chemical oxidation of Mn(II), and thus we performed 16S rDNA sequencing to isolate the bacterial strains present in the Mn layers. Bacterial phyla present in the Mn layers belonged to Firmicutes, Actinobacteria and Proteobacteria, and from these phyla we isolated six strains of Mn(II) oxidizing bacteria and confirmed their ability to oxidise Mn(II) in the laboratory. The biogenic Mn oxide layers act as a sink for metals and the bioavailability of these metals was much lower in the Mn layers than in adjacent layers, reflecting their preferential sorption to the biogenic Mn oxide. In this presentation we will report our findings, concluding that the formation of natural biogenic poorly crystalline birnessite can occur at acidic pH, resulting in the formation of a biogeochemical barrier which, in turn, can control the mobility and bioavailability of heavy metals in

  10. Large increases in Arctic biogenic volatile emissions are a direct effect of warming

    Science.gov (United States)

    Kramshøj, Magnus; Vedel-Petersen, Ida; Schollert, Michelle; Rinnan, Åsmund; Nymand, Josephine; Ro-Poulsen, Helge; Rinnan, Riikka

    2016-05-01

    Biogenic volatile organic compounds are reactive gases that can contribute to atmospheric aerosol formation. Their emission from vegetation is dependent on temperature and light availability. Increasing temperature, changing cloud cover and shifting composition of vegetation communities can be expected to affect emissions in the Arctic, where the ongoing climate changes are particularly severe. Here we present biogenic volatile organic compound emission data from Arctic tundra exposed to six years of experimental warming or reduced sunlight treatment in a randomized block design. By separately assessing the emission response of the whole ecosystem, plant shoots and soil in four measurements covering the growing season, we have identified that warming increased the emissions directly rather than via a change in the plant biomass and species composition. Warming caused a 260% increase in total emission rate for the ecosystem and a 90% increase in emission rates for plants, while having no effect on soil emissions. Compared to the control, reduced sunlight decreased emissions by 69% for the ecosystem, 61-65% for plants and 78% for soil. The detected strong emission response is considerably higher than observed at more southern latitudes, emphasizing the high temperature sensitivity of ecosystem processes in the changing Arctic.

  11. Biogenic antimicrobial silver nanoparticles produced by fungi.

    Science.gov (United States)

    Rodrigues, Alexandre G; Ping, Liu Yu; Marcato, Priscyla D; Alves, Oswaldo L; Silva, Maria C P; Ruiz, Rita C; Melo, Itamar S; Tasic, Ljubica; De Souza, Ana O

    2013-01-01

    Aspergillus tubingensis and Bionectria ochroleuca showed excellent extracellular ability to synthesize silver nanoparticles (Ag NP), spherical in shape and 35 ± 10 nm in size. Ag NP were characterized by transmission electron microscopy, X-ray diffraction analysis, and photon correlation spectroscopy for particle size and zeta potential. Proteins present in the fungal filtrate and in Ag NP dispersion were analyzed by electrophoresis (sodium dodecyl sulfate polyacrylamide gel electrophoresis). Ag NP showed pronounced antifungal activity against Candida sp, frequently occurring in hospital infections, with minimal inhibitory concentration in the range of 0.11-1.75 μg/mL. Regarding antibacterial activity, nanoparticles produced by A. tubingensis were more effective compared to the other fungus, inhibiting 98.0 % of Pseudomonas. aeruginosa growth at 0.28 μg/mL. A. tubingensis synthesized Ag NP with surprisingly high and positive surface potential, differing greatly from all known fungi. These data open the possibility of obtaining biogenic Ag NP with positive surface potential and new applications.

  12. Sampling and monitoring of biogenic emissions by eucalyptus leaves using membrane extraction with sorbent interface (MESI).

    Science.gov (United States)

    Wang, Limei; Lord, Heather; Morehead, Rick; Dorman, Frank; Pawliszyn, Janusz

    2002-10-23

    Membrane extraction with sorbent interface (MESI) has been applied to monitor plant fragrance volatiles emitted into indoor air. The main components of the MESI system are a membrane module and a trap, which can be connected directly to a GC or GC-MS for simultaneous multicomponent extraction and monitoring. A polydimethylsiloxane (PDMS) membrane and two different traps, PDMS and Tenax, as well as a DC current supply for trap desorption have been applied in this research. After the membrane module is placed in contact with the plant, the MESI/GC-MS provides semicontinuous characterization of volatile compounds emitted. The MESI device has been applied to monitor the biogenic volatile organic compounds released during the first 8 h after a branch was cut from a Eucalyptus dunnii tree. The study demonstrates that the MESI system is a simple and useful tool for monitoring changes in emission processes as a function of time.

  13. [Study on transformation mechanism of SOA from biogenic VOC under UV-B condition].

    Science.gov (United States)

    Li, Ying-Ying; Li, Xiang; Chen, Jian-Min

    2011-12-01

    A laboratory study was carried out to investigate the biogenic volatile organic compounds (BVOC) in a lab-made glass chamber. The secondary organic aerosol (SOA) products can be detected under the UV photooxidation of BVOC. Pelargonium x Citrenella was chosen as the target plant in this research because it can release a large amount of BVOCs. The predominant 7 alkene and ketol compounds were detected by using solid phase microextraction (SPME) sampling and gas chromatography/mass spectrometry (GC/MS) analysis. The photochemical experiment indicated that these BVOC can be rapidly oxidized into SOA under UV-B irradiation. A tandem differential mobility analyzer (TDMA) was used to measure the size distribution and the hygroscopicity of the SOA. The particle diameter was in the range of 50 nm to 320 nm. The high hygroscopicity of SOA was also obtained and the size increased from 1.05 to 1.11 during the wet experiment.

  14. Characterization of biogenic secondary organic aerosols using statistical methods; Charakterisierung Biogener Sekundaerer Organischer Aerosole mit Statistischen Methoden

    Energy Technology Data Exchange (ETDEWEB)

    Spindler, Christian

    2010-07-01

    Atmospheric aerosols have important influence on the radiation balance of the Earth, on visibility and human health. Secondary organic aerosol is formed from gas-to-particle conversion of oxidized volatile organic compounds. A dominant fraction of the gases originates from plant emissions, making biogenic secondary organic aerosol (BSOA) an especially important constituent of the atmosphere. Knowing the chemical composition of BSOA particles is crucial for a thorough understanding of aerosol processes in the environment. In this work, the chemical composition of BSOA particles was measured with aerosol mass spectrometry and analyzed with statistical methods. The experimental part of the work comprises process studies of the formation and aging of biogenic aerosols in simulation chambers. Using a plant chamber, real tree emissions were used to produce particles in a way close to conditions in forest environments. In the outdoor chamber SAPHIR, OH-radicals were produced from the photooxidation of ozone under illumination with natural sunlight. Here, BSOA was produced from defined mixtures of mono- and sesquiterpenes that represent boreal forest emissions. A third kind of experiments was performed in the indoor chamber AIDA. Here, particles were produced from ozonolysis of single monoterpenes and aged by condensing OH-oxidation products. Two aerosol mass spectrometers (AMS) were used to measure the chemical composition of the particles. One of the instruments is equipped with a quadrupole mass spectrometer providing unit mass resolution. The second instrument contains a time-of-flight mass spectrometer and provides mass resolution sufficient to distinguish different fragments with the same nominal mass. Aerosol mass spectra obtained with these instruments are strongly fragmented due to electron impact ionization of the evaporated molecules. In addition, typical BSOA mass spectra are very similar to each other. In order to get a more detailed knowledge about the mass

  15. Sensitivity of modeled ozone concentrations to uncertainties in biogenic emissions

    International Nuclear Information System (INIS)

    Roselle, S.J.

    1992-06-01

    The study examines the sensitivity of regional ozone (O3) modeling to uncertainties in biogenic emissions estimates. The United States Environmental Protection Agency's (EPA) Regional Oxidant Model (ROM) was used to simulate the photochemistry of the northeastern United States for the period July 2-17, 1988. An operational model evaluation showed that ROM had a tendency to underpredict O3 when observed concentrations were above 70-80 ppb and to overpredict O3 when observed values were below this level. On average, the model underpredicted daily maximum O3 by 14 ppb. Spatial patterns of O3, however, were reproduced favorably by the model. Several simulations were performed to analyze the effects of uncertainties in biogenic emissions on predicted O3 and to study the effectiveness of two strategies of controlling anthropogenic emissions for reducing high O3 concentrations. Biogenic hydrocarbon emissions were adjusted by a factor of 3 to account for the existing range of uncertainty in these emissions. The impact of biogenic emission uncertainties on O3 predictions depended upon the availability of NOx. In some extremely NOx-limited areas, increasing the amount of biogenic emissions decreased O3 concentrations. Two control strategies were compared in the simulations: (1) reduced anthropogenic hydrocarbon emissions, and (2) reduced anthropogenic hydrocarbon and NOx emissions. The simulations showed that hydrocarbon emission controls were more beneficial to the New York City area, but that combined NOx and hydrocarbon controls were more beneficial to other areas of the Northeast. Hydrocarbon controls were more effective as biogenic hydrocarbon emissions were reduced, whereas combined NOx and hydrocarbon controls were more effective as biogenic hydrocarbon emissions were increased

  16. Consistent quantification of climate impacts due to biogenic carbon storage across a range of bio-product systems

    International Nuclear Information System (INIS)

    Guest, Geoffrey; Bright, Ryan M.; Cherubini, Francesco; Strømman, Anders H.

    2013-01-01

    Temporary and permanent carbon storage from biogenic sources is seen as a way to mitigate climate change. The aim of this work is to illustrate the need to harmonize the quantification of such mitigation across all possible storage pools in the bio- and anthroposphere. We investigate nine alternative storage cases and a wide array of bio-resource pools: from annual crops, short rotation woody crops, medium rotation temperate forests, and long rotation boreal forests. For each feedstock type and biogenic carbon storage pool, we quantify the carbon cycle climate impact due to the skewed time distribution between emission and sequestration fluxes in the bio- and anthroposphere. Additional consideration of the climate impact from albedo changes in forests is also illustrated for the boreal forest case. When characterizing climate impact with global warming potentials (GWP), we find a large variance in results which is attributed to different combinations of biomass storage and feedstock systems. The storage of biogenic carbon in any storage pool does not always confer climate benefits: even when biogenic carbon is stored long-term in durable product pools, the climate outcome may still be undesirable when the carbon is sourced from slow-growing biomass feedstock. For example, when biogenic carbon from Norway Spruce from Norway is stored in furniture with a mean life time of 43 years, a climate change impact of 0.08 kg CO 2 eq per kg CO 2 stored (100 year time horizon (TH)) would result. It was also found that when biogenic carbon is stored in a pool with negligible leakage to the atmosphere, the resulting GWP factor is not necessarily − 1 CO 2 eq per kg CO 2 stored. As an example, when biogenic CO 2 from Norway Spruce biomass is stored in geological reservoirs with no leakage, we estimate a GWP of − 0.56 kg CO 2 eq per kg CO 2 stored (100 year TH) when albedo effects are also included. The large variance in GWPs across the range of resource and carbon storage

  17. A plant chamber system with downstream reaction chamber to study the effects of pollution on biogenic emissions.

    Science.gov (United States)

    Timkovsky, J; Gankema, P; Pierik, R; Holzinger, R

    2014-01-01

    A system of two plant chambers and a downstream reaction chamber has been set up to investigate the emission of biogenic volatile organic compounds (BVOCs) and possible effects of pollutants such as ozone. The system can be used to compare BVOC emissions from two sets of differently treated plants, or to study the photochemistry of real plant emissions under polluted conditions without exposing the plants to pollutants. The main analytical tool is a proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF-MS) which allows online monitoring of biogenic emissions and chemical degradation products. The identification of BVOCs and their oxidation products is aided by cryogenic trapping and subsequent in situ gas chromatographic analysis.

  18. Emissions of biogenic VOC from forest ecosystems in central Europe: Estimation and comparison with anthropogenic emission inventory

    International Nuclear Information System (INIS)

    Zemankova, Katerina; Brechler, Josef

    2010-01-01

    This paper describes a method of estimating emission fluxes of biogenic volatile organic compounds (BVOCs) based on the approach proposed by and the high-resolution Corine land-cover 2000 database (1 x 1 km resolution). The computed emission fluxes for the Czech Republic (selected for analysis as being representative of a heavily cultivated, central European country) are compared with anthropogenic emissions, both for the entire country and for individual administrative regions. In some regions, BVOC emissions are as high as anthropogenic emissions; however, in most regions the BVOC emissions are approximately 50% of the anthropogenic emissions. The yearly course of BVOC emissions (represented by monoterpenes and isoprene) is presented, along with the spatial distribution of annual mean values. Differences in emission distributions during winter (January) and summer (June) are also considered. - The amount of the biogenic VOCs emitted over the central Europe is comparable with the anthropogenic VOC emissions from this region.

  19. Transformation and Crystallization Energetics of Synthetic and Biogenic Amorphous Calcium Carbonate

    Energy Technology Data Exchange (ETDEWEB)

    Radha, A. V. [Peter A. Rock Thermochemistry Lab. and Nanomaterials in the Environment, Agriculture, and Technology Organized Research Unit (NEAT ORU), Univ. of California, Davis, CA (United States); Forbes, Tori Z. [Peter A. Rock Thermochemistry Lab. and Nanomaterials in the Environment, Agriculture, and Technology Organized Research Unit (NEAT ORU), Univ. of California, Davis, CA (United States); Killian, Christopher E. [Univ. of Wisconsin, Madison, WI (United States); Gilbert, P.U.P.A [Univ. of Wisconsin, Madison, WI (United States); Navrotsky, Alexandra [Peter A. Rock Thermochemistry Lab. and Nanomaterials in the Environment, Agriculture, and Technology Organized Research Unit (NEAT ORU), Univ. of California, Davis, CA (United States)

    2010-01-01

    Amorphous calcium carbonate (ACC) is a metastable phase often observed during low temperature inorganic synthesis and biomineralization. ACC transforms with aging or heating into a less hydrated form, and with time crystallizes to calcite or aragonite. The energetics of transformation and crystallization of synthetic and biogenic (extracted from California purple sea urchin larval spicules, Strongylocentrotus purpuratus) ACC were studied using isothermal acid solution calorimetry and differential scanning calorimetry. Transformation and crystallization of ACC can follow an energetically downhill sequence: more metastable hydrated ACC → less metastable hydrated ACC→anhydrous ACC ~ biogenic anhydrous ACC→vaterite → aragonite → calcite. In a given reaction sequence, not all these phases need to occur. The transformations involve a series of ordering, dehydration, and crystallization processes, each lowering the enthalpy (and free energy) of the system, with crystallization of the dehydrated amorphous material lowering the enthalpy the most. ACC is much more metastable with respect to calcite than the crystalline polymorphs vaterite or aragonite. The anhydrous ACC is less metastable than the hydrated, implying that the structural reorganization during dehydration is exothermic and irreversible. Dehydrated synthetic and anhydrous biogenic ACC are similar in enthalpy. The transformation sequence observed in biomineralization could be mainly energetically driven; the first phase deposited is hydrated ACC, which then converts to anhydrous ACC, and finally crystallizes to calcite. The initial formation of ACC may be a first step in the precipitation of calcite under a wide variety of conditions, including geological CO₂ sequestration.

  20. Long-term measurements of biogenic VOCs in an Austrian valley - discussion of seasonal fluctuations of isoprene and monoterpene concentrations

    International Nuclear Information System (INIS)

    Dunkl, J.; Schnitzhofer, R.; Beauchamp, J.; Wisthaler, A; Hansel, A.

    2006-01-01

    Full text: A proton-transfer-reaction mass spectrometer (PTR-MS) was set up at a monitoring station in the river Inn valley (Vomp, Tirol, Austria) for a year-long measurement (February 2004-May 2005) of volatile organic compounds (VOCs) in the local valley air. Measurements of PM 10 , NO x and CO, and certain meteorological parameters were additionally made. Together, these data-sets enabled relationships between VOC abundances, meteorological conditions and anthropogenic emissions (primarily from automobile emissions) to be examined. The work presented here focuses on the biogenic VOCs measured under these real-world outdoor conditions. Initially, data needed to be separated between VOCs of anthropogenic and of biogenic origin. This was achieved by generating a model for the PTR-MS VOC data-set. A clear correlation between benzene and CO concentrations - indicating benzene's predominance from anthropogenic sources - allowed benzene to be used as a tracer for anthropogenic compounds. The model thus allowed a regression to be made whereby the maximum anthropogenic contributions of almost all VOCs could be established relative to benzene. The maximum contribution from biogenic emissions to each VOC could thus be determined as the difference between the total individual VOC signal and the corresponding maximum anthropogenic share. The two biogenic VOCs of principle interest here were isoprene and the monoterpenes (detected by PTR-MS at masses 69 amu and 137 amu, respectively). As expected, abundances of isoprene and the monoterpenes displayed a late-summer maximum (despite good vertical valley air dilution that acts to reduce VOC levels) when temperatures were high and sunlight hours long. Preliminary results will be presented and discussed. (author)

  1. Accounting for urban biogenic fluxes in regional carbon budgets.

    Science.gov (United States)

    Hardiman, Brady S; Wang, Jonathan A; Hutyra, Lucy R; Gately, Conor K; Getson, Jackie M; Friedl, Mark A

    2017-08-15

    Many ecosystem models incorrectly treat urban areas as devoid of vegetation and biogenic carbon (C) fluxes. We sought to improve estimates of urban biomass and biogenic C fluxes using existing, nationally available data products. We characterized biogenic influence on urban C cycling throughout Massachusetts, USA using an ecosystem model that integrates improved representation of urban vegetation, growing conditions associated with urban heat island (UHI), and altered urban phenology. Boston's biomass density is 1/4 that of rural forests, however 87% of Massachusetts' urban landscape is vegetated. Model results suggest that, kilogram-for-kilogram, urban vegetation cycles C twice as fast as rural forests. Urban vegetation releases (R E ) and absorbs (GEE) the equivalent of 11 and 14%, respectively, of anthropogenic emissions in the most urban portions of the state. While urban vegetation in Massachusetts fully sequesters anthropogenic emissions from smaller cities in the region, Boston's UHI reduces annual C storage by >20% such that vegetation offsets only 2% of anthropogenic emissions. Asynchrony between temporal patterns of biogenic and anthropogenic C fluxes further constrains the emissions mitigation potential of urban vegetation. However, neglecting to account for biogenic C fluxes in cities can impair efforts to accurately monitor, report, verify, and reduce anthropogenic emissions. Copyright © 2017 Elsevier B.V. All rights reserved.

  2. Technologies for the utilisation of biogenic waste in the bioeconomy.

    Science.gov (United States)

    O'Callaghan, Kenneth

    2016-05-01

    A brief review has been done of technologies involved in the exploitation of biogenic wastes, in order to provide an introduction to the subject from the technological perspective. Biogenic waste materials and biomass have historically been utilised for thousands of years, but a new conversation is emerging on the role of these materials in modern bioeconomies. Due to the nature of the products and commodities now required, a modern bioeconomy is not simply a rerun of former ones. This new dialogue needs to help us understand how technologies for managing and processing biogenic wastes--both established and novel--should be deployed and integrated (or not) to meet the requirements of the sustainability, closed-loop and resource-security agendas that evidently sit behind the bioeconomy aspirations now being voiced in many countries and regions of the world. Copyright © 2015 Elsevier Ltd. All rights reserved.

  3. The occurrence and significance of biogenic opal in the regolith

    Science.gov (United States)

    Clarke, Jonathan

    2003-02-01

    Biogenic opal produced by vascular plants, diatoms, and siliceous sponges have been found in soils and terrestrial sediments of all continents except Antarctica since the middle of the 19th century. The opal particles range in size from fine silt to fine sand. Almost all soils contain detectable opal up to levels of 2-3%, and a significant number contain values in excess of 5%. Even higher values have been found from soils and sediments of all continents in a wide range of soil types. The most important factor is poor soil drainage and seasonal to permanent water logging. This encourages the proliferation of silica producing organisms. Such conditions have been found in the soils and aquatic sediments of the monsoonal tropics, tropical rain forests, temperate forests, tropical savanna, tropical islands, semi-arid grasslands and savanna, and temperate woodland and grassland. The presence of a volcanic substrate also appears favourable in some cases, but is not necessary. Biogenic opal preferentially collects in the A horizon of soils and, to a lesser extent, in the B horizon. This preferential distribution facilitates identification of palaeosols in stacked soil sequences. Biogenic opal is also a component of windblown dust, even in arid environments. Biogenic opal is significant to regolith processes in a number of ways. Firstly, as in the case in marine environments, it is likely to be important in silica cycling and storage because of its greater lability compared to quartz. Secondly, dissolution and reprecipitation of opal A as opal CT or micro-quartz may play a role in cementation and silicification of regolith to form silica hardpans and silcrete. Thirdly, the organisms that form biogenic opal can have considerable palaeoenvironmental significance and be valuable in reconstructing regolith evolution. Finally, some forms of biogenic silica, in particular sponge spicules, can present a health hazard. Their high abundance in some soils and sediments needs to be

  4. Confocal Raman microscope mapping as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina

    Directory of Open Access Journals (Sweden)

    J. Nouet

    2011-12-01

    Full Text Available Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusks represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (~300 nm. Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystal lattice.

  5. Confocal Raman microscope mapping as a tool to describe different mineral and organic phases at high spatial resolution within marine biogenic carbonates: case study on Nerita undata (Gastropoda, Neritopsina)

    Science.gov (United States)

    Nehrke, G.; Nouet, J.

    2011-12-01

    Marine biogenic carbonates formed by invertebrates (e.g. corals and mollusks) represent complex composites of one or more mineral phases and organic molecules. This complexity ranges from the macroscopic structures observed with the naked eye down to sub micrometric structures only revealed by micro analytical techniques. Understanding to what extent and how organisms can control the formation of these structures requires that the mineral and organic phases can be identified and their spatial distribution related. Here we demonstrate the capability of confocal Raman microscopy applied to cross sections of a shell of Nerita undata to describe the distribution of calcite and aragonite including their crystallographic orientation with high lateral resolution (~300 nm). Moreover, spatial distribution of functional groups of organic compounds can be simultaneously acquired, allowing to specifically relate them to the observed microstructures. The data presented in this case study highlights the possible new contributions of this method to the description of modalities of Nerita undata shell formation, and what could be expected of its application to other marine biogenic carbonates. Localization of areas of interest would also allow further investigations using more localized methods, such as TEM that would provide complementary information on the relation between organic molecules and crystal lattice.

  6. Changes in the brain biogenic monoamines of rats, induced by piracetam and aniracetam.

    Science.gov (United States)

    Petkov, V D; Grahovska, T; Petkov, V V; Konstantinova, E; Stancheva, S

    1984-01-01

    Single oral dose of 600 mg/kg weight piracetam, respectively 50 mg/kg aniracetam, causes essential changes in the level and turnover of dopamine (DA) and serotonin (5-HT) in some rat cerebral structures. When the animals were killed one hour after the administration of the drugs, piracetam significantly increased the DA level in the cerebral cortex and in the striatum, as well as the 5-HT level in the cortex, reducing the 5-HT level in the striatum, brain stem and hypothalamus. At the same time, under the effect of piracetam the DA turnover was accelerated in the cortex and hypothalamus and delayed in the striatum, the noradrenaline turnover was accelerated in the brain stem, the 5-HT turnover was accelerated in the cortex and delayed in the striatum, stem and hypothalamus. Under the effect of aniracetam the DA level was reduced in the striatum and hypothalamus; the 5-HT level was also decreased in the hypothalamus and increased in the cortex and striatum. Aniracetam delayed the DA turnover in the striatum and the 5-HT turnover in the hypothalamus, accelerating the 5-HT turnover in the cortex, striatum and stem. The results obtained show that the changes induced in the cerebral biogenic monoamines participate in the mechanism of action of piracetam and aniracetam, whereby it seems that the analogies and differences in their effects on the cerebral biogenic monoamines play a definite role for the observed analogies and differences in the behavioural effects of these two "nootropic" compounds.

  7. Tropospheric methanol observations from space: constraints on the seasonality of biogenic emissions

    Science.gov (United States)

    Wells, K. C.; Millet, D. B.; Cady-Pereira, K. E.; Shephard, M. W.; Xiao, Y.; Razavi, A.; Clerbaux, C.

    2011-12-01

    Methanol is the most abundant non-methane organic compound in the atmosphere, and is an important precursor of atmospheric pollutants such as CO and formaldehyde. The recent development of methanol retrievals from nadir-viewing satellite-based platforms offers powerful new information for quantifying methanol emissions on a global scale. This study uses methanol observations from the Tropospheric Emission Spectrometer (TES) on the Aura satellite and the Infrared Atmospheric Sounding Interferometer (IASI) on the MetOp-A satellite, in conjunction with aircraft data, to investigate methanol emissions from major plant functional types in the GEOS-Chem global chemical transport model (driven with MEGAN biogenic emissions). We first evaluate the TES methanol retrievals by comparing to simulation results and flight observations from several North American field campaigns. Results show that the retrieval performs well when the degrees of freedom for signal are above 0.5. We analyze one full year of TES and IASI observations and find a persistent model underestimate in springtime, and make recommendations for an improved seasonal distribution of biogenic methanol emissions over temperate regions of the globe.

  8. Biogenic amines in smear and mould-ripened cheeses

    Directory of Open Access Journals (Sweden)

    Pavel Pleva

    2014-02-01

    Full Text Available The aim of the study was the monitoring of six biogenic amines (histamine, tyramine, phenylethylamine, tryptamine, putrescine, and cadaverine and two polyamines (spermidine and spermine in 30 samples of dairy products purchased in the Czech Republic, namely in 15 samples of mould-ripened cheeses and in 15 samples of smear-ripened cheeses. A further goal was the microbiological analysis of the individual samples of cheeses (total count of microorganisms, number of enterobacteria, enterococci, lactic acid bacteria, yeasts and moulds. The monitored biogenic amines were analyzed by a high performance liquid chromatography equipped with a UV/VIS DAD detector. The amount of enterobacteria in fresh cheese exceeded 105 CFU.g‑1. In smear-ripened cheese flavourless (Romadur type, the amount was >103 CFU.g-1 and 104-105 CFU.g-1 in smear-ripened cheese with flavour. Biogenic amines were observed in two groups of blue cheeses (white veined cheese and blue veined cheese and smear-ripened cheeses. In both groups, there is a possibility of the presence of biogenic amines because the number of microorganisms and concentration of free amino acids increase during ripening. In ten samples of soft smear-ripening acid cheese and in smear-ripened cheese, the total content of biogenic amines were 22-1000 mg.kg-1 and in 5 samples of these cheeses, it was in range 1000-6000 mg.kg-1. The total amount of biogenic amines in the blue cheeses were in range 40-600 mg.kg-1. The presense of the tyramine was observed in the all analysed cheeses. The tyramine producing strains generated more than 900 mg.kg-1 of this biogenic amine. The production of tryptamine in the analysed cheeses was not proved by this study. The results of this study show that biogenic amines and polyamines are common in cheese. However, in some cases, they can pose a significant health danger for consumers. Any legislative control authority does not monitor them, as they are secondary metabolites even

  9. Biogen to produce diagnostic tests, vaccines and ethanol

    Energy Technology Data Exchange (ETDEWEB)

    1982-01-11

    In addition to its work on pharmaceuticals and veterinary products, Europe's largest biotechnology company, Biogen, is reported to be working on the production of ethanol from biomass. The process, based on two strains of clostridia bacteria, can convert both the cellulose and hemicellulose of agricultural wastes to ethanol. Biogen is also studying the production of basic chemicals, such as acetic acid, acetone and butane from cellulosic biomass and is looking at various types of organisms to effect low cost chemical conversions.

  10. Determination of Biogenic Amines in Different Shrimp Species for Export

    International Nuclear Information System (INIS)

    Myat Myat Thaw; Oo Aung; Aung Myint; Bisswanger, Hans

    2004-06-01

    This study is part of the project on the ''Quality Assurance of Different Shrimp Species for Export''. Local shrimp samples were collected from Ministry of Livestock and Fisheries and various private enterprises. Contents of biogenic amines were determined by using benzoyl chloride derivatization method with HPLC (reverse phase high performance liquid chromatography). Based on the biogenic amines, quality index of shrimps were correlated with freshness index so that the grade of shrimp samples can be classified as excellent, good, and acceptable. All sizes of shrimps such as extra large, large, medium were found to excceptable respectively

  11. Biomass burning - Combustion emissions, satellite imagery, and biogenic emissions

    Science.gov (United States)

    Levine, Joel S.; Cofer, Wesley R., III; Winstead, Edward L.; Rhinehart, Robert P.; Cahoon, Donald R., Jr.; Sebacher, Daniel I.; Sebacher, Shirley; Stocks, Brian J.

    1991-01-01

    After detailing a technique for the estimation of the instantaneous emission of trace gases produced by biomass burning, using satellite imagery, attention is given to the recent discovery that burning results in significant enhancement of biogenic emissions of N2O, NO, and CH4. Biomass burning accordingly has an immediate and long-term impact on the production of atmospheric trace gases. It is presently demonstrated that satellite imagery of fires may be used to estimate combustion emissions, and could be used to estimate long-term postburn biogenic emission of trace gases to the atmosphere.

  12. Water uptake is independent of the inferred composition of secondary aerosols derived from multiple biogenic VOCs

    Science.gov (United States)

    Alfarra, M. R.; Good, N.; Wyche, K. P.; Hamilton, J. F.; Monks, P. S.; Lewis, A. C.; McFiggans, G.

    2013-12-01

    We demonstrate that the water uptake properties derived from sub- and super-saturated measurements of chamber-generated biogenic secondary organic aerosol (SOA) particles are independent of their degree of oxidation, determined using both online and offline methods. SOA particles are formed from the photooxidation of five structurally different biogenic VOCs, representing a broad range of emitted species and their corresponding range of chemical reactivity: α-pinene, β-caryophyllene, limonene, myrcene and linalool. The fractional contribution of mass fragment 44 to the total organic signal (f44) is used to characterise the extent of oxidation of the formed SOA as measured online by an aerosol mass spectrometer. Results illustrate that the values of f44 are dependent on the precursor, the extent of photochemical ageing as well as on the initial experimental conditions. SOA generated from a single biogenic precursor should therefore not be used as a general proxy for biogenic SOA. Similarly, the generated SOA particles exhibit a range of hygroscopic properties, depending on the precursor, its initial mixing ratio and photochemical ageing. The activation behaviour of the formed SOA particles show no temporal trends with photochemical ageing. The average κ values derived from the HTDMA and CCNc are generally found to cover the same range for each precursor under two different initial mixing ratio conditions. A positive correlation is observed between the hygroscopicity of particles of a single size and f44 for α-pinene, β-caryophyllene, linalool and myrcene, but not for limonene SOA. The investigation of the generality of this relationship reveals that α-pinene, limonene, linalool and myrcene are all able to generate particles with similar hygroscopicity (κHTDMA ~0.1) despite f44 exhibiting a relatively wide range of values (~4 to 11%). Similarly, κCCN is found to be independent of f44. The same findings are also true when sub- and super-saturated water uptake

  13. Time resolved investigations on biogenic trace gases exchanges using proton-transfer-reaction mass spectrometry

    International Nuclear Information System (INIS)

    Karl, T.

    2000-02-01

    Volatile organic compounds (VOCs) released from vegetation, including wound-induced VOCs, can have important effects on atmospheric chemistry. The analytical methods for measuring wound-induced VOCs, especially the hexenal family of VOCs (hexenals, hexenols and hexenyl esters) but also compounds like acetaldehyde, are complicated by their chemical instability and the transient nature of their formation after leaf and stem wounding. The goal of this thesis was to assess, quantify and complement our understanding on the origin of tropospheric VOCs. This thesis demonstrates that formation and emission of hexenal family compounds can be monitored on-line using proton-transfer-reaction mass spectrometry (PTR-MS), avoiding the need for preconcentration or chromatography. These measurements revealed the rapid emission of the parent compound, (Z)-3-hexenal, within 1-2 seconds of wounding of leaves from various woody and nonwoody plants, and its metabolites including (E)-2-hexenal, hexenols and hexenyl acetates. Emission of (Z)-3-hexenal from detached, drying leaves averaged 500 μg (gram dry weight)-1. PTR-MS showed to be a useful tool for the analysis of VOC emissions resulting from grazing, herbivory, harvesting and senescing leaves. The release of reactive VOCs during lawn mowing was observed in on-line ambient air measurements in July and August 1998 in the outskirts of Innsbruck. Also obtained were data on emission rates of reactive aldehydes (hexenyl compounds) and other abundant VOCs such as methanol, acetaldehyde and acetone from drying grass in various chamber experiments. Fluxes were measured after cutting of grass using eddy covariance measurements and the micrometeorological gradient method (Obhukov-Similarity-Method). Comparison of data obtained by these different methods showed satisfactory agreement. The highest fluxes for methanol during drying were 5 mg/m2h, for (Z)-3-hexenal 1.5 mg/m2h. Experiments conducted on the Sonnblick Observatory in Fall and Winter

  14. Anthropogenic impact on biogenic substance distribution and bacterial community in sediment along the Yarlung Tsangpo River on Tibet Plateau, China

    Science.gov (United States)

    Wang, C.; Peifang, W.; Wang, X.; Hou, J.; Miao, L.

    2017-12-01

    Lotic river system plays an important part in water-vapor transfer and biogenic substances migration and transformation. Anthropogenic activities, including wastewater discharging and river damming, have altered river ecosystem and continuum. However, as the longest alpine river in China and suffered from increasing anthropogenic activities, the Yarlung Tsangpo River has been rarely studied. Recently, more attention has also been paid to the bacteria in river sediment as they make vital contributions to the biogeochemical nutrient cycling. Here, the distribution of biogenic substances, including nitrogen, phosphorus, silicon and carbon, was explored in both water and sediment of the Yarlung Tsangpo River. By using the next generation 16S rRNA sequencing, the bacterial diversity and structure in river sediment were presented. The results indicated that the nutrient concentrations increased in densely populated sites, revealing that biogenic substance distribution corresponded with the intensity of anthropogenic activity along the river. Nitrogen, phosphorus, silicon and carbon in water and sediment were all retained by the Zangmu Dam which is the only dam in the mainstream of the river. Moreover, the river damming decreased the biomass and diversity of bacteria in sediment, but no significant alteration of community structure was observed upstream and downstream of the dam. The most dominant bacteria all along the river was Proteobacteria. Meanwhile, Verrucomicrobia and Firmicutes also dominated the community composition in upstream and downstream of the river, respectively. In addition, total organic carbon (TOC) was proved to be the most important environmental factor shaping the bacterial community in river sediment. Our study offered the preliminary insights into the biogenic substance distribution and bacterial community in sediment along an alpine river which was affected by anthropogenic activities. In the future, more studies are needed to reveal the

  15. Receptor modelling and risk assessment of volatile organic compounds measured at a regional background site in South Africa

    Science.gov (United States)

    Jaars, Kerneels; Vestenius, Mika; van Zyl, Pieter G.; Beukes, Johan P.; Hellén, Heidi; Vakkari, Ville; Venter, Marcell; Josipovic, Miroslav; Hakola, Hannele

    2018-01-01

    Volatile organic compounds (VOCs) can have significant impacts on climate and human health. Certain VOCs are proven to be carcinogenic and toxic, which can affect human health directly and indirectly. In order to develop climate change reduction strategies and to assess the impacts of VOCs on human health, it is crucial to determine the sources of VOCs, which can be emitted from biogenic and anthropogenic sources. The aim of this study was to perform source apportionment using positive matrix factorisation (PMF) analysis on VOC data collected at a regional background location affected by the major sources in the interior of South Africa, which include the western- and eastern Bushveld Igneous Complex, the Johannesburg-Pretoria metropolitan conurbation, the Vaal Triangle, the Mpumalanga Highveld and also a region of anti-cyclonic recirculation of air mass over the interior of South Africa. In addition, a risk assessment study was also performed in view of the major source regions affecting Welgegund in order to quantify the impacts of anthropogenic VOCs measured at Welgegund on human health. Measurements were conducted at the Welgegund measurement station located on a commercial farm approximately 100 km west of Johannesburg for a period of more than two years. PMF analysis revealed ten meaningful factor solutions, of which five factors were associated with biogenic emissions and five with anthropogenic sources. Three of the biogenic factors were characterised by a specific biogenic species, i.e. isoprene, limonene and 2-methyl-3-buten-2-ol (MBO), while the other two biogenic factors comprised mixtures of biogenic species with different tracer species. The temporal factor contribution for the isoprene, limonene and MBO factors correlated relatively well with the seasonal wet pattern. One anthropogenic factor was associated with emissions from a densely populated anthropogenic source region to the east of Welgegund with a large number of industrial activities, while

  16. 76 FR 80368 - Notification of Teleconferences of the Science Advisory Board Biogenic Carbon Emissions Panel

    Science.gov (United States)

    2011-12-23

    ... Advisory Board Biogenic Carbon Emissions Panel AGENCY: Environmental Protection Agency (EPA). ACTION... Office announces two teleconferences of the SAB Biogenic Carbon Emissions Panel to review EPA's draft Accounting Framework for Biogenic CO2 Emissions from Stationary Sources (September 2011). DATES: The...

  17. Biogenic gases in tropical floodplain river

    Directory of Open Access Journals (Sweden)

    Maria Victória Ramos Ballester

    2001-06-01

    Full Text Available Analysis of the distribution of biogenic gases in the floodplain of the Mogi-Guaçu River (São Paulo, Brazil enabled the establishment of a "redox hierarchy", in which the main channel was the most oxidizing environment, followed by Diogo Lake, with Infernão Lake having the most reducing conditions of the subsystems evaluated. Diogo Lake exported about 853.4 g C.m-2.year-1, of which, 14.6% was generated from methanogenesis and 36.7% by aerobic respiration. For Infernão Lake, these values were 2016 g C.m-2.year-1, 1.8 % and 41.5 %, respectively. Carbon export by these systems was predominantly in the form of CO2, which was responsible for the release of 728.78 g C.m-2.year-1 at Diogo Lake and 1979.72 g C.m-2. year-1 at Infernão Lake. Such patterns may result from the nature of the hydrological conditions, the action of the hydroperiod, and morphological characteristics of the environment.A análise da distribuição de gases biogênicos na planície de inundação do Rio Mogi Guaçu (São Paulo, Brasil possibilitou o estabelecimento de um gradiente redox para os sistemas aquáticos avaliados, em que o canal principal do rio apresentou-se como o ambiente mais oxidado, seguido da Lagoa do Diogo, e a Lagoa do Infernão apresentando as condições mais redutoras entre os ambientes em questão. A Lagoa do Diogo exporta um total de 853,4 g C.m-2.ano-1, do qual 14,6% é produzido pela metanogênese e 36,7% pela respiração aeróbia. Para a Lagoa do Infernão estes valores foram respectivamente de 2.016 g C.m-2.ano-1, 1,8% e de 41,5%. A exportação de carbono por estes sistemas é realizada, predominantemente na forma de CO2, nos valores de 728,78 g C.m-2.ano-1 para a Lagoa do Diogo e 1.979,72 g C.m-2.ano-1 para a Lagoa do Infernão. Estes padrões parecem estar relacionados com a natureza das condições hidrológicas, com a ação do hidroperíodo e com as características morfológicas do ambiente.

  18. Characterization of total ecosystem scale biogenic VOC exchange at a Mediterranean oak-hornbeam forest

    Science.gov (United States)

    Schallhart, S.; Rantala, P.; Nemitz, E.; Mogensen, D.; Tillmann, R.; Mentel, T. F.; Rinne, J.; Ruuskanen, T. M.

    2015-10-01

    Recently, the number and amount of biogenically emitted volatile organic compounds (VOCs) has been discussed vigorously. Depending on the ecosystem the published number varies between a dozen and several hundred compounds. We present ecosystem exchange fluxes from a mixed oak-hornbeam forest in the Po Valley, Italy. The fluxes were measured by a proton transfer reaction-time-of-flight (PTR-ToF) mass spectrometer and calculated by the eddy covariance (EC) method. Detectable fluxes were observed for twelve compounds, dominated by isoprene, which comprised over 65 % of the total flux emission. The daily average of the total VOC emission was 9.5 nmol m-2 s-1. Methanol had the highest concentration and accounted for the largest deposition. Methanol seemed to be deposited to dew, as the deposition happened in the early morning, right after the calculated surface temperature came closest to the calculated dew point temperature. We estimated that up to 27 % of the upward flux of methyl vinyl ketone (MVK) and methacrolein (MACR) originated from atmospheric oxidation of isoprene. A comparison between two flux detection methods (classical/visual and automated) was made. Their respective advantages and disadvantages were discussed and the differences in their results shown. Both provide comparable results; however we recommend the automated method with a compound filter, which combines the fast analysis and better flux detection, without the overestimation due to double counting.

  19. A potential link among biogenic amines-based pesticides, learning and memory, and colony collapse disorder: a unique hypothesis.

    Science.gov (United States)

    Farooqui, Tahira

    2013-01-01

    Pesticides are substances that have been widely used throughout the world to kill, repel, or control organisms such as certain forms of plants or animals considered as pests. Depending on their type, dose, and persistence in the environment, they can have impact even on non-target species such as beneficial insects (honeybees) in different ways, including reduction in their survival rate and interference with their reproduction process. Honeybee Apis mellifera is a major pollinator and has substantial economical and ecological values. Colony collapse disorder (CCD) is a mysterious phenomenon in which adult honeybee workers suddenly abandon from their hives, leaving behind food, brood, and queen. It is lately drawing a lot of attention due to pollination crisis as well as global agriculture and medical demands. If the problem of CCD is not resolved soon enough, this could have a major impact on food industry affecting world's economy a big time. Causes of CCD are not known. In this overview, I discuss CCD, biogenic amines-based-pesticides (neonicotinoids and formamidines), and their disruptive effects on biogenic amine signaling causing olfactory dysfunction in honeybees. According to my hypothesis, chronic exposure of biogenic amines-based-pesticides to honeybee foragers in hives and agricultural fields can disrupt neural cholinergic and octopaminergic signaling. Abnormality in biogenic amines-mediated neuronal signaling impairs their olfactory learning and memory, therefore foragers do not return to their hive - a possible cause of CCD. This overview is an attempt to discuss a hypothetical link among biogenic amines-based pesticides, olfactory learning and memory, and CCD. Copyright © 2012 Elsevier Ltd. All rights reserved.

  20. Geophysical monitoring of biogenic gas dynamics in a northern peatland: seasonal variability and implications for production rates

    Science.gov (United States)

    Comas, X.; Slater, L.; Reeve, A.; Nolan, J.

    2007-12-01

    In-situ biogenic gas dynamics and seasonal variability within a northern peatland in Maine (Caribou Bog) were investigated using a set of high resolution surface ground penetrating radar (GPR) surveys. Measurements were combined with elevation rod (to monitor surface deformation) and gas flux measurements. Spatial variability in gas production was also investigated by comparing two sites with different geological and ecological attributes, and showed a striking dependence on seasonal variability. One site characterized by thick highly humified peat deposits (5-6 m), wooded heath vegetation and open pools showed large ebullition events during the summer season, emitting up to 156 g CH4 m-2 during a single event. The other site characterized by thinner less humified peat deposits (2-3 m) and shrub vegetation showed much smaller ebullition events during the same season (accounting for up to 21 g CH4 m-2). A period of biogenic gas accumulation during the fall and winter (as enhanced by the frozen surficial peat acting as a confining layer) was followed by a large FPG release after the snow/ice melt that released approximately 180 g CH4 m-2 from both sites. Gas production rates were directly estimated from the time series of GPR measurements (ranging between 0.35-1.80 g CH4 m-3 d-1 during periods of biogenic gas accumulation) and reflected strong seasonal and spatial variability. Periods of decreased atmospheric pressure showed certain correspondence with short-period increases in biogenic gas flux (including a very rapid decrease in FPG content associated with an ebullition event that released an estimated 61 g CH4 m-2 in less than 3.5 hours). These results provide insights into the spatial and seasonal variability in production and emission of biogenic gases from northern peatlands

  1. Use of biogenic sulfide for ZnS precipitation

    NARCIS (Netherlands)

    Esposito, G.; Veeken, A.; Weijma, J.; Lens, P.N.L.

    2006-01-01

    A 600 ml continuously stirred tank reactor was used to assess the performance of a zinc sulfide precipitation process using a biogenic sulfide solution (the effluent of a sulfate-reducing bioreactor) as sulfide source. In all experiments, a proportional-integral (PI) control algorithm was used to

  2. Azo dye decolorization assisted by chemical and biogenic sulfide

    Energy Technology Data Exchange (ETDEWEB)

    Prato-Garcia, Dorian [Laboratory for Research on Advanced Processes for Water Treatment, Unidad Académica Juriquilla, Instituto de Ingeniería, Universidad Nacional Autónoma de México, Blvd. Juriquilla 3001, Querétaro 76230 (Mexico); Cervantes, Francisco J. [División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa de San José 2055, San Luis Potosí 78216 (Mexico); Buitrón, Germán, E-mail: gbuitronm@ii.unam.mx [Laboratory for Research on Advanced Processes for Water Treatment, Unidad Académica Juriquilla, Instituto de Ingeniería, Universidad Nacional Autónoma de México, Blvd. Juriquilla 3001, Querétaro 76230 (Mexico)

    2013-04-15

    Highlights: ► Azo dyes were reduced efficiently by chemical and biogenic sulfide. ► Biogenic sulfide was more efficient than chemical sulfide. ► There was no competition between dyes and sulfate for reducing equivalents. ► Aromatic amines barely affected the sulfate-reducing process. -- Abstract: The effectiveness of chemical and biogenic sulfide in decolorizing three sulfonated azo dyes and the robustness of a sulfate-reducing process for simultaneous decolorization and sulfate removal were evaluated. The results demonstrated that decolorization of azo dyes assisted by chemical sulfide and anthraquinone-2,6-disulfonate (AQDS) was effective. In the absence of AQDS, biogenic sulfide was more efficient than chemical sulfide for decolorizing the azo dyes. The performance of sulfate-reducing bacteria in attached-growth sequencing batch reactors suggested the absence of competition between the studied azo dyes and the sulfate-reducing process for the reducing equivalents. Additionally, the presence of chemical reduction by-products had an almost negligible effect on the sulfate removal rate, which was nearly constant (94%) after azo dye injection.

  3. Biogenic ZnO nanoparticles synthesized using L. aculeata leaf

    Indian Academy of Sciences (India)

    ... Refresher Courses · Symposia · Live Streaming. Home; Journals; Bulletin of Materials Science; Volume 39; Issue 1. Biogenic ZnO nanoparticles synthesized using L. aculeata leaf extract and their antifungal activity against plant fungal pathogens. S Narendhran Rajeshwari Sivaraj. Volume 39 Issue 1 February 2016 pp 1- ...

  4. Conditions allowing the formation of biogenic amines in cheese

    NARCIS (Netherlands)

    Joosten, H.M.L.J.

    1988-01-01

    A study was undertaken to reveal the conditions that allow the formation of biogenic amines in cheese.

    The starters most commonly used in the Dutch cheese industry do not have decarboxylative properties. Only if the milk or curd is contaminated with non-starter bacteria, amine

  5. The secondary biogenic radiation of gamma-irradiated human blood

    International Nuclear Information System (INIS)

    Kuzin, A.M.; Surkenova, G.N.; Budagovskij, A.V.; Gudi, G.A.

    1997-01-01

    The sample of blood freshly taken from healthy men were gamma-irradiated with a dose of 10 Gy. It was shown that after the treatment the blood gained the capacity to emit secondary biogenic radiation. Emission lasted for some hours, passed through quartz-glass curette and was revealed by stimulating influence on biological detector (sprouting seeds)

  6. The influence of biogenic emissions from Africa on tropical tropospheric ozone during 2006: a global modeling study

    Directory of Open Access Journals (Sweden)

    J. E. Williams

    2009-08-01

    Full Text Available We have performed simulations using a 3-D global chemistry-transport model to investigate the influence that biogenic emissions from the African continent exert on the composition of the troposphere in the tropical region. For this purpose we have applied two recently developed biogenic emission inventories provided for use in large-scale global models (Granier et al., 2005; Lathière et al., 2006 whose seasonality and temporal distribution for biogenic emissions of isoprene, other volatile organic compounds and NO is markedly different. The use of the 12 year average values for biogenic emissions provided by Lathière et al. (2006 results in an increase in the amount of nitrogen sequestrated into longer lived reservoir compounds which contributes to the reduction in the tropospheric ozone burden in the tropics. The associated re-partitioning of nitrogen between PAN, HNO3 and organic nitrates also results in a ~5% increase in the loss of nitrogen by wet deposition. At a global scale there is a reduction in the oxidizing capacity of the model atmosphere which increases the atmospheric lifetimes of CH4 and CO by ~1.5% and ~4%, respectively. Comparisons against a range of different measurements indicate that applying the 12 year average of Lathière et al. (2006 improves the performance of TM4_AMMA for 2006 in the tropics. By the use of sensitivity studies we show that the release of NO from soils in Africa accounts for between ~2–45% of tropospheric ozone in the African troposphere, ~10% in the upper troposphere and between ~5–20% of the tropical tropospheric ozone column over the tropical Atlantic Ocean. The subsequent reduction in OH over the source regions allows enhanced transport of CO out of the region. For biogenic volatile organic C1 to C3 species released from Africa, the effects on tropical tropospheric ozone are rather limited, although this source contributes to the global burden of VOC by between ~2–4% and

  7. Mineralogical and Biogenic Composition of the Zanzibar Channel Sediments, Tanzania

    Science.gov (United States)

    Shaghude, Y. W.; Wannäs, K. O.

    2000-10-01

    Sediments from the Zanzibar Channel have been analysed for mineralogical and biogenic composition. The main objective of the study was to describe the depositional environment of the sediments based on these parameters. The study was also conducted to give an insight into sediment provenance of the sediments. Quartz, feldspar (both microcline and plagioclase) and hornblende are the main mineralogical components, while zircon, muscovite, biotite and augite occur as accessory minerals. The quartz grains are generally angular to sub-angular and highly strained, indicative of immature sediments, probably derived from highly metamorphosed rocks. The presence of hornblende also supports the conclusion that the sediments are immature. A possible source is the metamorphic rocks of the Mozambique belt, located about 25-50 km from the coastline. Benthic foraminifera are the dominant biogenic constituents. Other common biogenic constituents are molluscs (pelecypods and gastropods) and corals. Bryozoans and ostracods are relatively less common, while sea urchins are accessory biogenic components. The composition and abundance of these biogenic components and morphological, sedimentological and mineralogical data permit construction of a simple model which distinguishes between three bio-physiographic settings in the Zanzibar Channel using depth contours: (1) the coastal zone (0-10 m depth); (2) the reef platform/patch reefs zone (10-20 m depth) and (3) the central channel zone (>20 cm depth). In the coastal zone, the sediments are dominated by fine sand, sized with a very prominent fine sand mode. The proportion of benthic foraminifera is lower than in the other two zones (25%). Two lithogenic mineral components (quartz and feldspar) occur in significant proportions. In the reef platform/patch reefs zone, the sediments are coarse to medium sand sized with no distinct mode. the proportion of benthic foraminifera is highest (80-85%) there, and so is the biogenic:quartz ratio

  8. Deposition of Biogenic Iron Minerals in a Methane Oxidizing Microbial Mat

    Directory of Open Access Journals (Sweden)

    Christoph Wrede

    2013-01-01

    Full Text Available The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  9. Deposition of biogenic iron minerals in a methane oxidizing microbial mat.

    Science.gov (United States)

    Wrede, Christoph; Kokoschka, Sebastian; Dreier, Anne; Heller, Christina; Reitner, Joachim; Hoppert, Michael

    2013-01-01

    The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  10. Biogenic amines and polyamines: similar biochemistry for different physiological missions and biomedical applications.

    Science.gov (United States)

    Medina, Miguel Angel; Urdiales, José Luis; Rodríguez-Caso, Carlos; Ramírez, Francisco Javier; Sánchez-Jiménez, Francisca

    2003-01-01

    Biogenic amines are organic polycations derived from aromatic or cationic amino acids. All of them have one or more positive charges and a hydrophobic skeleton. Nature has evolved these molecules to play different physiological roles in mammals, but maintains similar patterns for their metabolic and intracellular handling. As deduced from this review, many questions still remain to be solved around their biochemistry and molecular biology, blocking our aims to control the relevant pathologies in which they are involved (cancer and immunological, neurological, and gastrointestinal diseases). Advances in this knowledge are dispersed among groups working on different biomedical areas. In these pages, we put together the most relevant information to remark how fruitful it can be to learn from Nature and to take advantage of the biochemical similarities (key protein structures and their regulation data on metabolic interplays and binding properties) to generate new hypothesis and develop different biomedical strategies based on biochemistry and molecular biology of these compounds.

  11. Evidence of aqueous secondary organic aerosol formation from biogenic emissions in the North American Sonoran Desert.

    Science.gov (United States)

    Youn, Jong-Sang; Wang, Zhen; Wonaschütz, Anna; Arellano, Avelino; Betterton, Eric A; Sorooshian, Armin

    2013-07-16

    This study examines the role of aqueous secondary organic aerosol formation in the North American Sonoran Desert as a result of intense solar radiation, enhanced moisture, and biogenic volatile organic compounds (BVOCs). The ratio of water-soluble organic carbon (WSOC) to organic carbon (OC) nearly doubles during the monsoon season relative to other seasons of the year. When normalized by mixing height, the WSOC enhancement during monsoon months relative to preceding dry months (May-June) exceeds that of sulfate by nearly a factor of 10. WSOC:OC and WSOC are most strongly correlated with moisture parameters, temperature, and concentrations of O 3 and BVOCs. No positive relationship was identified between WSOC or WSOC:OC and anthropogenic tracers such as CO over a full year. This study points at the need for further work to understand the effect of BVOCs and moisture in altering aerosol properties in understudied desert regions.

  12. Studies of the Atmospheric Chemsitry of Energy-Related Volatile Organic Compounds and of their Atmospheric Reaction Products

    Energy Technology Data Exchange (ETDEWEB)

    Roger Atkinson; Janet Arey

    2007-04-14

    The focus of this contract was to investigate selected aspects of the atmospheric chemistry of volatile organic compounds (VOCs) emitted into the atmosphere from energy-related sources as well as from biogenic sources. The classes of VOCs studied were polycyclic aromatic hydrocarbons (PAHs) and nitro-PAHs, the biogenic VOCs isoprene, 2-methyl-3-buten-2-ol and cis-3-hexen-1-ol, alkenes (including alkenes emitted from vegetation) and their oxygenated atmospheric reaction products, and a series of oxygenated carbonyl and hydroxycarbonyl compounds formed as atmospheric reaction products of aromatic hydrocarbons and other VOCs. Large volume reaction chambers were used to investigate the kinetics and/or products of photolysis and of the gas-phase reactions of these organic compounds with hydroxyl (OH) radicals, nitrate (NO3) radicals, and ozone (O3), using an array of analytical instrumentation to analyze the reactants and products (including gas chromatography, in situ Fourier transform infrared spectroscopy, and direct air sampling atmospheric pressure ionization tandem mass spectrometry). The following studies were carried out. The photolysis rates of 1- and 2-nitronaphthalene and of eleven isomeric methylnitronaphthalenes were measured indoors using blacklamp irradiation and outdoors using natural sunlight. Rate constants were measured for the gas-phase reactions of OH radicals, Cl atoms and NO3 radicals with naphthalene, 1- and 2-methylnaphthalene, 1- and 2-ethylnaphthalene and the ten dimethylnaphthalene isomers. Rate constants were measured for the gas-phase reactions of OH radicals with four unsaturated carbonyls and with a series of hydroxyaldehydes formed as atmospheric reaction products of other VOCs, and for the gas-phase reactions of O3 with a series of cycloalkenes. Products of the gas-phase reactions of OH radicals and O3 with a series of biogenically emitted VOCs were identified and quantified. Ambient atmospheric measurements of the concentrations of a

  13. Hyperspectral observation of anthropogenic and biogenic pollution in coastal zone

    Science.gov (United States)

    Lavrova, Olga; Loupian, Evgeny; Mityagina, Marina; Uvarov, Ivan

    The work presents results of anthropogenic and biogenic pollution detection in coastal zones of the Black and Caspian Seas based on satellite hyperspetral data provided by the Hyperion and HICO instruments. Techniques developed on the basis of the analysis of spectral characteristics calculated in special points were employed to address the following problems: (a) assessment of the blooming intensity of cyanobacteria and their distribution in bays of western Crimea and discrimination between anthropogenic pollutant discharge events and algae bloom; (b) detection of anthropogenic pollution in Crimean lakes utilized as industrial liquid discharge reservoirs; (c) detection of oil pollution in areas of shelf oil production in the Caspian Sea. Information values of different spectral bands and their composites were estimated in connection with the retrieval of the main sea water components: phytoplankton, suspended matter and colored organic matter, and also various anthropogenic pollutants, including oil. Software tools for thematic hyperspectral data processing in application to the investigation of sea coastal zones and internal water bodies were developed on the basis of the See the Sea geoportal created by the Space Research Institute RAS. The geoportal is focused on the study of processes in the world ocean with the emphasis on the advantages of satellite systems of observation. The tools that were introduced into the portal allow joint analysis of quasi-simultaneous satellite data, in particular data from the Hyperion, HICO, OLI Landsat-8, ETM Landsat-7 and TM Landsat-5 instruments. Results of analysis attempts combining data from different sensors are discussed. Their strong and weak points are highlighted. The study was completed with partial financial support from The Russian Foundation for Basic Research grants # 14-05-00520-a and 13-07-12017.

  14. Additive impairment of the barrier function and irritation by biogenic amines and sodium lauryl sulphate: a controlled in vivo tandem irritation study.

    Science.gov (United States)

    Fluhr, J W; Kelterer, D; Fuchs, S; Kaatz, M; Grieshaber, R; Kleesz, P; Elsner, P

    2005-01-01

    Biogenic amines are potential irritants e.g. in fish-, meat-, milk- and egg-processing professions like cooks, butchers and bakers. The aim of this study was to test the irritative and barrier-disrupting properties of the biogenic amines ammonium hydroxide (AM), dimethylamine (DMA) and trimethylamine (TMA). A repeated sequential irritation of 30 min twice per day was performed over a total of 4 days (tandem repeated irritation test) on the back of 20 healthy volunteers of both sexes with AM, DMA, TMA and sodium lauryl sulphate (SLS). The epidermal barrier function was assessed with a Tewameter TM 210, stratum corneum surface pH was measured with a Skin-pH-Meter 900, inflammation was assessed with a Chromameter CR-300 on the a* axis for redness and a visual score was recorded. All tested biogenic amines (AM, DMA and TMA) induced a barrier disruption and a pH increase paralleled with a 1-day-delayed onset of inflammatory signs. These effects were further enhanced and accelerated by a sequential application of SLS together with the biogenic amines, and inflammation occurred earlier than with the single compounds. Acetic acid (AA) in contrast did only show mild barrier disruption and no significant inflammatory signs. Our system allowed a ranking of the different compounds in their irritative potential in the tandem irritation with SLS: SLS > NaOH > TMA > AA > AM > DMA. The results are suggestive that in the food-processing industry the simultaneous contact with biogenic amines and harmful detergents like SLS should be minimized. Copyright 2005 S. Karger AG, Basel.

  15. Biogenic Calcium Phosphate Transformation in Soils over Millennium Time Scales

    Energy Technology Data Exchange (ETDEWEB)

    Sato, S.; Neves, E; Solomon, D; Liang, B; Lehmann, J

    2009-01-01

    Changes in bioavailability of phosphorus (P) during pedogenesis and ecosystem development have been shown for geogenic calcium phosphate (Ca-P). However, very little is known about long-term changes of biogenic Ca-P in soil. Long-term transformation characteristics of biogenic Ca-P were examined using anthropogenic soils along a chronosequence from centennial to millennial time scales. Phosphorus fractionation of Anthrosols resulted in overall consistency with the Walker and Syers model of geogenic Ca-P transformation during pedogenesis. The biogenic Ca-P (e.g., animal and fish bones) disappeared to 3% of total P within the first ca. 2,000 years of soil development. This change concurred with increases in P adsorbed on metal-oxides surfaces, organic P, and occluded P at different pedogenic time. Phosphorus K-edge X-ray absorption near-edge structure (XANES) spectroscopy revealed that the crystalline and therefore thermodynamically most stable biogenic Ca-P was transformed into more soluble forms of Ca-P over time. While crystalline hydroxyapatite (34% of total P) dominated Ca-P species after about 600-1,000 years, {Beta}-tricalcium phosphate increased to 16% of total P after 900-1,100 years, after which both Ca-P species disappeared. Iron-associated P was observable concurrently with Ca-P disappearance. Soluble P and organic P determined by XANES maintained relatively constant (58-65%) across the time scale studied. Conclusions - Disappearance of crystalline biogenic Ca-P on a time scale of a few thousand years appears to be ten times faster than that of geogenic Ca-P.

  16. Formation of Nano-crystalline Todorokite from Biogenic Mn Oxides

    Energy Technology Data Exchange (ETDEWEB)

    Feng, X.; Zhu, M; Ginder-Vogel, M; Ni, C; Parikh, S; Sparks, D

    2010-01-01

    Todorokite, as one of three main Mn oxide phases present in oceanic Mn nodules and an active MnO{sub 6} octahedral molecular sieve (OMS), has garnered much interest; however, its formation pathway in natural systems is not fully understood. Todorokite is widely considered to form from layer structured Mn oxides with hexagonal symmetry, such as vernadite ({delta}-MnO{sub 2}), which are generally of biogenic origin. However, this geochemical process has not been documented in the environment or demonstrated in the laboratory, except for precursor phases with triclinic symmetry. Here we report on the formation of a nanoscale, todorokite-like phase from biogenic Mn oxides produced by the freshwater bacterium Pseudomonas putida strain GB-1. At long- and short-range structural scales biogenic Mn oxides were transformed to a todorokite-like phase at atmospheric pressure through refluxing. Topotactic transformation was observed during the transformation. Furthermore, the todorokite-like phases formed via refluxing had thin layers along the c* axis and a lack of c* periodicity, making the basal plane undetectable with X-ray diffraction reflection. The proposed pathway of the todorokite-like phase formation is proposed as: hexagonal biogenic Mn oxide {yields} 10-{angstrom} triclinic phyllomanganate {yields} todorokite. These observations provide evidence supporting the possible bio-related origin of natural todorokites and provide important clues for understanding the transformation of biogenic Mn oxides to other Mn oxides in the environment. Additionally this method may be a viable biosynthesis route for porous, nano-crystalline OMS materials for use in practical applications.

  17. Reactivity of biogenic manganese oxide for metal sequestration and photochemistry: Computational solid state physics study

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, K.D.; Sposito, G.

    2010-02-01

    Many microbes, including both bacteria and fungi, produce manganese (Mn) oxides by oxidizing soluble Mn(II) to form insoluble Mn(IV) oxide minerals, a kinetically much faster process than abiotic oxidation. These biogenic Mn oxides drive the Mn cycle, coupling it with diverse biogeochemical cycles and determining the bioavailability of environmental contaminants, mainly through strong adsorption and redox reactions. This mini review introduces recent findings based on quantum mechanical density functional theory that reveal the detailed mechanisms of toxic metal adsorption at Mn oxide surfaces and the remarkable role of Mn vacancies in the photochemistry of these minerals.

  18. Mastitis Modifies the Biogenic Amines Profile in Human Milk, with Significant Changes in the Presence of Histamine, Putrescine and Spermine.

    Directory of Open Access Journals (Sweden)

    Marta Perez

    Full Text Available Biogenic amines (BAs are low molecular weight nitrogenous organic compounds with different biological activities. Putrescine, spermidine and spermine are essential for the development of the gut and immune system of newborns, and are all found in human milk. Little is known, however, about the role of histamine, tyramine or cadaverine in breast milk. Nor is it known whether mastitis alters the BA composition of milk. The BA profile of human milk, and the influence of mastitis on BA concentrations, were therefore investigated. Putrescine, spermidine and spermine were the main BAs detected. In mastitis-affected milk, the concentrations of putrescine, spermine and histamine were higher.

  19. Mastitis Modifies the Biogenic Amines Profile in Human Milk, with Significant Changes in the Presence of Histamine, Putrescine and Spermine.

    Science.gov (United States)

    Perez, Marta; Ladero, Victor; Redruello, Begoña; Del Rio, Beatriz; Fernandez, Leonides; Rodriguez, Juan Miguel; Martín, M Cruz; Fernandez, María; Alvarez, Miguel A

    2016-01-01

    Biogenic amines (BAs) are low molecular weight nitrogenous organic compounds with different biological activities. Putrescine, spermidine and spermine are essential for the development of the gut and immune system of newborns, and are all found in human milk. Little is known, however, about the role of histamine, tyramine or cadaverine in breast milk. Nor is it known whether mastitis alters the BA composition of milk. The BA profile of human milk, and the influence of mastitis on BA concentrations, were therefore investigated. Putrescine, spermidine and spermine were the main BAs detected. In mastitis-affected milk, the concentrations of putrescine, spermine and histamine were higher.

  20. The relationship between Al and Si in biogenic silica as determined by PIXE and XAS

    International Nuclear Information System (INIS)

    Beck, L.; Gehlen, M.; Flank, A.-M.; Bennekom, A.J. van; Beusekom, J.E.E. van

    2002-01-01

    Biogenic silica, one of the major constituents of marine sediments, is a potentially powerful paleoceanographic tool, revealing information on past productivity. Interpreting the sedimentary records of the biogenic silica requires, however, an understanding of its preservation. Dissolution of biogenic silica is controlled by the presence of trace elements such as Al. The work in this paper focuses on the association of Al and Si in biogenic silica. The composition and the atomic structure of cultured and natural diatoms were determined by using PIXE and XAS techniques. This study provides the first evidence for a structural association of Al and Si in biogenic silica

  1. Characteristics of Biogenic VOCs Emission and its High-Resolution Emission Inventory in China

    Science.gov (United States)

    Li, L.; Li, Y.; Xie, S.

    2017-12-01

    Biogenic volatile organic compounds (BVOCs), with high emission and reactivity, can have substantial impacts on the haze and photochemical pollution. It is essential to establish an accurate high-resolution BVOC emission inventory in China for air quality simulation and decision making. Firstly, a semi-static enclosure technique is developed for the field measurements of BVOC emission rates from 50 plant species in China. Using the GC-MS/FID system, 103 VOC species for each plant species are measured. Based on the field measurements in our study and the reported emission rates at home and abroad, a methodology for determining the emission categories of BVOCs is developed using statistical analysis. The isoprene and monoterpene emission rates of 192 plant species/genera in China are determined based on the above emission categories. Secondly, a new vegetation classification with 82 plant functional types (PFTs) is developed based on the most detailed and latest vegetation investigations, China's official statistical data and Vegetation Atlas of China (1:1,000,000). The leaf biomass is estimated based on provincial vegetation volume and production with biomass-apportion models. The WRF model is used to determine meteorological variables at a high spatio-temporal resolution. Using MEAGNv2.1 and the determined emission rates in our study, the high-resolution emission inventories of isoprene, 37 monoterpene species, 32 sesquiterpene species, and other VOCs (OVOCs) from 82 PFTs in China for 1981-2013 are established. The total annual BVOC emissions in 2013 are 55.88 Tg, including 33.87 Tg isoprene, 6.36 Tg monoterpene, 1.29 Tg sesquiterpene, and 14.37 Tg OVOCs. The distribution of isoprene emission fluxes is consistent with the distribution of broadleaf trees, especially tree species with high or higher emission potential. During 1981-2013, China's BVOC emissions have increased by 47.48% at an average rate of 1.80% yr-1. Emissions of isoprene have the largest enhancement

  2. Compound odontoma

    Directory of Open Access Journals (Sweden)

    Monica Yadav

    2012-01-01

    Full Text Available Odontomas have been extensively reported in the dental literature, and the term refers to tumors of odontogenic origin. Though the exact etiology is still unknown, the postulated causes include: local trauma, infection, inheritance and genetic mutation. The majority of the lesions are asymptomatic; however, may be accompanied with pain and swelling as secondary complaints in some cases. Here, we report a case of a compound odontome in a 14 year old patient.

  3. Structure and ligand-binding properties of the biogenic amine-binding protein from the saliva of a blood-feeding insect vector of Trypanosoma cruzi

    International Nuclear Information System (INIS)

    Xu, Xueqing; Chang, Bianca W.; Mans, Ben J.; Ribeiro, Jose M. C.; Andersen, John F.

    2013-01-01

    Biogenic amine-binding proteins mediate the anti-inflammatory and antihemostatic activities of blood-feeding insect saliva. The structure of the amine-binding protein from R. prolixus reveals the interaction of biogenic amine ligands with the protein. Proteins that bind small-molecule mediators of inflammation and hemostasis are essential for blood-feeding by arthropod vectors of infectious disease. In ticks and triatomine insects, the lipocalin protein family is greatly expanded and members have been shown to bind biogenic amines, eicosanoids and ADP. These compounds are potent mediators of platelet activation, inflammation and vascular tone. In this paper, the structure of the amine-binding protein (ABP) from Rhodnius prolixus, a vector of the trypanosome that causes Chagas disease, is described. ABP binds the biogenic amines serotonin and norepinephrine with high affinity. A complex with tryptamine shows the presence of a binding site for a single ligand molecule in the central cavity of the β-barrel structure. The cavity contains significant additional volume, suggesting that this protein may have evolved from the related nitrophorin proteins, which bind a much larger heme ligand in the central cavity

  4. Structure and ligand-binding properties of the biogenic amine-binding protein from the saliva of a blood-feeding insect vector of Trypanosoma cruzi

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Xueqing; Chang, Bianca W. [NIH/NIAID, 12735 Twinbrook Parkway, Rockville, MD 20852 (United States); Mans, Ben J. [NIH/NIAID, 12735 Twinbrook Parkway, Rockville, MD 20852 (United States); Agricultural Research Council, Onderstepoort 0110 (South Africa); Ribeiro, Jose M. C.; Andersen, John F., E-mail: jandersen@niaid.nih.gov [NIH/NIAID, 12735 Twinbrook Parkway, Rockville, MD 20852 (United States)

    2013-01-01

    Biogenic amine-binding proteins mediate the anti-inflammatory and antihemostatic activities of blood-feeding insect saliva. The structure of the amine-binding protein from R. prolixus reveals the interaction of biogenic amine ligands with the protein. Proteins that bind small-molecule mediators of inflammation and hemostasis are essential for blood-feeding by arthropod vectors of infectious disease. In ticks and triatomine insects, the lipocalin protein family is greatly expanded and members have been shown to bind biogenic amines, eicosanoids and ADP. These compounds are potent mediators of platelet activation, inflammation and vascular tone. In this paper, the structure of the amine-binding protein (ABP) from Rhodnius prolixus, a vector of the trypanosome that causes Chagas disease, is described. ABP binds the biogenic amines serotonin and norepinephrine with high affinity. A complex with tryptamine shows the presence of a binding site for a single ligand molecule in the central cavity of the β-barrel structure. The cavity contains significant additional volume, suggesting that this protein may have evolved from the related nitrophorin proteins, which bind a much larger heme ligand in the central cavity.

  5. Magnetic Dinner Salads: The Role of Biogenic Magnetite in Cryopreservation for Common Food Plants

    Science.gov (United States)

    Chaffee, T. M.; Kirschvink, J. L.; Kobayashi, A. K.

    2015-12-01

    Biogenically-precipitated magnetite has been found in organisms ranging from Bacteria, single-celled protists, and many of the animal phyla, where its major function is navigation and magnetoreception. To date there is but a single report of biogenic magnetite in plants (essentially, magnetoferritin), and that is in common grass (Festuca species, from Gajdardziska-Josifovska et. al. doi:10.1127/0935-1221/2001/0013/0863). Recent developments in cryopreservation suggest that ~ 1 mT, ~ 10 Hz oscillating magnetic fields can drastically reduce ice nucleation during freezing, promote supercooling, and minimize cellular damage in living tissues (e.g., Kaku et al., doi: 10.1016/j.cryobiol.2012.02.001). Kobayashi & Kirschvink (2014, doi:10.1016/j.cryobiol.2013.12.002) suggest that biogenic magnetite crystals could be the nucleating site for damaging ice crystals, and that they would be driven magneto-mechanically to rotate in those oscillating fields which could inhibit the ice crystal nucleation process. This prompted our investigation into the magnetite content of ordinary fruit and vegetable food products, as knowledge of the natural levels of biogenic magnetite in the human food supply could guide the selection of which foods might work for this type of cryopreservation. Our study involved a range of common foods including avocados, bananas, garlic, and apples. Samples were prepared in a clean lab environment kept free of contaminant particles, and subjected to a variety of standard rock-magnetic tests including IRM and ARM acquisition, and the corresponding Af demagnetization, on a standard 2G™ SRM. Results are consistent with moderately interacting single-domain magnetite (see figure), with moderate inter-particle interaction effects. Typical magnetite concentrations in these samples are in the range of .1 to 1 ng/g for room temperature samples, increasing to the range of 1-10 ng/g when measured frozen (to inhibit thermal rotation of small particles and clumps). If

  6. Origin and variability in volatile organic compounds observed at an Eastern Mediterranean background site (Cyprus

    Directory of Open Access Journals (Sweden)

    C. Debevec

    2017-09-01

    Full Text Available More than 7000 atmospheric measurements of over 60 C2 − C16 volatile organic compounds (VOCs were conducted at a background site in Cyprus during a 1-month intensive field campaign held in March 2015. This exhaustive dataset consisted of primary anthropogenic and biogenic VOCs, including a wide range of source-specific tracers, and oxygenated VOCs (with various origins that were measured online by flame ionization detection–gas chromatography and proton transfer mass spectrometry. Online submicron aerosol chemical composition was performed in parallel using an aerosol mass spectrometer. This study presents the high temporal variability in VOCs and their associated sources. A preliminary analysis of their time series was performed on the basis of independent tracers (NO, CO, black carbon, meteorological data and the clustering of air mass trajectories. Biogenic compounds were mainly attributed to a local origin and showed compound-specific diurnal cycles such as a daily maximum for isoprene and a nighttime maximum for monoterpenes. Anthropogenic VOCs as well as oxygenated VOCs displayed higher mixing ratios under the influence of continental air masses (i.e., western Asia, indicating that long-range transport significantly contributed to the VOC levels in the area. Source apportionment was then conducted on a database of 20 VOCs (or grouped VOCs using a source receptor model. The positive matrix factorization and concentration field analyses were hence conducted to identify and characterize covariation factors of VOCs that were representative of primary emissions as well as chemical transformation processes. A six-factor PMF solution was selected, namely two primary biogenic factors (relative contribution of 43 % to the total mass of VOCs for different types of emitting vegetation; three anthropogenic factors (short-lived combustion source, evaporative sources, industrial and evaporative sources; 21 % all together, identified

  7. Mesoionic Compounds

    Indian Academy of Sciences (India)

    property has been used to determine whether a compound is aromatic or not. Mesoionic compounds are structurally very different from ben- zenoid compounds, but they fulfill most of the criteria of aroma- ticity and form a part of a variety of aromatic compounds, which can be classified as follows. A) Benzenoid Compounds.

  8. Biomass burning: Combustion emissions, satellite imagery, and biogenic emissions

    International Nuclear Information System (INIS)

    Levine, J.S.; Cofer, W.R III; Rhinehart, R.P.; Cahoon, D.R. J.; Winstead, E.L.; Sebacher, S.; Sebacher, D.I.; Stocks, B.J.

    1991-01-01

    This chapter deals with two different, but related, aspects of biomass burning. The first part of the chapter deals with a technique to estimate the instantaneous emissions of trace gases produced by biomass burning using satellite imagery. The second part of the chapter concerns the recent discovery that burning results in significantly enhanced biogenic emissions of N 2 O, NO, and CH 4 . Hence, biomass burning has both an immediate and long-term impact on the production of trace gases to the atmosphere. The objective of this research is to better assess and quantify the role of this research is to better assess and quantify the role and impact of biomass as a driver for global change. It will be demonstrated that satellite imagery of fires may be used to estimate combustion emissions and may in the future be used to estimate the long-term postburn biogenic emissions of trace gases to the atmosphere

  9. Post-column derivatization capillary electrochromatography for detection of biogenic amines in tuna-meat.

    Science.gov (United States)

    Oguri, Shigeyuki; Okuya, Yukie; Yanase, Yukiko; Suzuki, Sayaka

    2008-08-15

    A system to perform post-column derivatization capillary electrochromatography (CEC) was developed for the first time. The system mainly included a 4-microm (O.D.) silica packed column (200 mm effective length x 0.1 mm inner diameter I.D.) with micro-magnetic particles (MMPs) frits, a T-junction connector, an in-line fluorescence detector and a high-voltage power supply. The system was evaluated by using histamine (HA) as a standard biogenic amine for this study. A 5 microM HA solution was loaded at the anodic site of the capillary column by applying 3 kV for 5s. Then, HA was electrophoretically eluted with a 20mM phosphate buffer (pH 7) by applying 3 kV, and was derivatized with 3mM o-phthalaldehyde (OPA)/N-acetylcysteine (NAC) in 100 mM borate (pH 10), which was continuously delivered through the reagent-loading capillary tube by gravity into the T-junction connector. HA derivative was finally detected with the in-line fluorescence detector (lambda(Ex)=340 nm, lambda(Em)=450 nm) at 9.7 min after sample loading. To test the utility of this system, it was next employed for its ability to detect the presence of HA and other kinds of biogenic amines, including cadaverine (Cad), spermidine (Spm) and tyramine (Tyr) in tuna-meat, once the validity of the method had been confirmed.

  10. Composition and Sources of Particulate Matter Measured near Houston, TX: Anthropogenic-Biogenic Interactions

    Directory of Open Access Journals (Sweden)

    Jeffrey K. Bean

    2016-05-01

    Full Text Available Particulate matter was measured in Conroe, Texas (~60 km north of downtown Houston, Texas during the September 2013 DISCOVER-AQ campaign to determine the sources of particulate matter in the region. The measurement site is influenced by high biogenic emission rates as well as transport of anthropogenic pollutants from the Houston metropolitan area and is therefore an ideal location to study anthropogenic-biogenic interactions. Data from an Aerosol Chemical Speciation Monitor (ACSM suggest that on average 64 percent of non-refractory PM1 was organic material, including a high fraction (27%–41% of organic nitrates. There was little diurnal variation in the concentrations of ammonium sulfate; however, concentrations of organic and organic nitrate aerosol were consistently higher at night than during the day. Potential explanations for the higher organic aerosol loadings at night include changing boundary layer height, increased partitioning to the particle phase at lower temperatures, and differences between daytime and nighttime chemical processes such as nitrate radical chemistry. Positive matrix factorization was applied to the organic aerosol mass spectra measured by the ACSM and three factors were resolved—two factors representing oxygenated organic aerosol and one factor representing hydrocarbon-like organic aerosol. The factors suggest that the measured aerosol was well mixed and highly processed, consistent with the distance from the site to major aerosol sources, as well as the high photochemical activity.

  11. Chemical characterisation of atmospheric aerosols during a 2007 summer field campaign at Brasschaat, Belgium: sources and source processes of biogenic secondary organic aerosol

    Directory of Open Access Journals (Sweden)

    Y. Gómez-González

    2012-01-01

    Full Text Available Measurements of organic marker compounds and inorganic species were performed on PM2.5 aerosols from a Belgian forest site that is severely impacted by urban pollution ("De Inslag", Brasschaat, Belgium during a 2007 summer period within the framework of the "Formation mechanisms, marker compounds, and source apportionment for biogenic atmospheric aerosols (BIOSOL" project. The measured organic species included (i low-molecular weight (MW dicarboxylic acids (LMW DCAs, (ii methanesulfonate (MSA, (iii terpenoic acids originating from the oxidation of α-pinene, β-pinene, d-limonene and Δ3-carene, and (iv organosulfates related to secondary organic aerosol from the oxidation of isoprene and α-pinene. The organic tracers explained, on average, 5.3 % of the organic carbon (OC, of which 0.7 % was due to MSA, 3.4 % to LMW DCAs, 0.6 % to organosulfates, and 0.6 % to terpenoic acids. The highest atmospheric concentrations of most species were observed during the first five days of the campaign, which were characterised by maximum day-time temperatures >22 °C. Most of the terpenoic acids and the organosulfates peaked during day-time, consistent with their local photochemical origin. High concentrations of 3-methyl-1,2,3-butanetricarboxylic acid (MBTCA and low concentrations of cis-pinonic acid were noted during the first five days of the campaign, indicative of an aged biogenic aerosol. Several correlations between organic species were very high (r>0.85, high (0.7<r<0.85, or substantial (0.5<r<0.7, suggesting that they are generated through similar formation pathways. Substantial correlations with temperature were found for OC, water-soluble OC, MBTCA, and several other organic species. MBTCA and terebic acid were highly correlated with the temperature (r>0.7 and showed an Arrhenius-type relationship, consistent with their formation through OH radical chemistry.

  12. Development & Characterization of a Whole Plant Chamber for the Investigation of Environmental Perturbations on Biogenic VOC Emissions

    Science.gov (United States)

    Holder, J.; Riches, M.; Abeleira, A.; Farmer, D.

    2017-12-01

    Accurate prediction of both climate and air quality under a changing earth system requires a full understanding of the sources, feedbacks, and ultimate fate of all atmospherically relevant chemical species, including volatile organic compounds (VOCs). Biogenic VOCs (BVOC) from plant emissions are the main source of VOCs to the atmosphere. However, the impact of global change on BVOC emissions is poorly understood. For example, while short-term increases in temperature are typically associated with increased BVOC emissions, the impact of long-term temperature increases are less clear. Our study aims to investigate the effects of long-term, singular and combined environmental perturbations on plant BVOC emissions through the use of whole plant chambers in order to better understand the effects of global change on BVOC-climate-air quality feedbacks. To fill this knowledge gap and provide a fundamental understanding of how BVOC emissions respond to environmental perturbations, specifically elevated temperature, CO2, and drought, whole citrus trees were placed in home-built chambers and monitored for monoterpene and other BVOC emissions utilizing thermal desorption gas chromatography mass spectrometry (TD-GC-MS). Designing and building a robust whole plant chamber to study atmospherically relevant chemical species while accommodating the needs of live plants over timescales of days to weeks is not a trivial task. The environmental conditions within the chamber must be carefully controlled and monitored. The inter-plant and chamber variability must be characterized. Finally, target BVOCs need to be sampled and detected from the chamber. Thus, the chamber design, control and characterization considerations along with preliminary BVOC results will be presented and discussed.

  13. Volatile organic compound (VOC) analysis and sources of limonene, cyclohexanone and straight chain aldehydes in axenic cultures of Calothrix and Plectonema.

    Science.gov (United States)

    Höckelmann, C; Jüttner, F

    2004-01-01

    The volatile organic compounds (VOCs) in four standing cultures of axenic benthic cyanobacteria (Calothrix and Plectonema) were studied by GC/MS analysis. To verify the biogenic origin of the VOCs, 13C-labelling experiments were performed, and the differences in labelling were used to differentiate between biogenic and non-biogenic sources. Strongly labelled biogenic compounds were derived from the shikimate (cresol, skatole), isoprenoid (beta-cyclocitral, beta-ionone, geosmin) and fatty acid pathways (5Z-heptadecene, 3-octanone, 1-hexanol). New odour compounds derived from microorgansims were beta-cyclogeraniol, dihydro-beta-ionone and 2-hydroxy-2,6,6-trimethylcyclohexanone. The latter compound had already been found in lake water, but could not be assigned to a particular organism. Straight chain aldehydes (octanal, nonanal, decanal), cyclohexanone, cyclohexanol and limonene were unlabelled beyond their natural isotope ratio. Therefore, the biogenic origin of these compounds is doubtful despite their occurrence in axenic cultures. The observation that limonene was a racemate supports this view. The precursors and reactions that lead to the formation of these non-biogenic compounds are unknown and it may be that they are formed by the analytical procedures rather than then being present in the culture medium.

  14. Ecological, energetic and economical comparison of fermentation, composting and incineration of solid biogenic waste materials; Oekologischer, energetischer und oekonomischer Vergleich von Vergaerung, Kompostierung und Verbrennung fester biogener Abfallstoffe

    Energy Technology Data Exchange (ETDEWEB)

    Edelmann, W. [Arbeitsgemeinschaft Bioenergie GmbH, Arbi, Baar (Switzerland); Schleiss, K. [Umwelt- und Kompostberatung Schleiss, Baar (Switzerland)

    2001-07-01

    This study compares different technologies for the treatment of biogenic wastes, including open windrow and enclosed tunnel composting, anaerobic digestion, the combination of both these methods and burning in waste incineration plants. The methods are compared from the points of view of environmental impact, energy use and production, and economics. The environmental impact, calculated for normalised quantities of waste using the 'Ecoindicator 95+' tool, are discussed and the methane and carbon dioxide emissions of the different methods of treatment are compared. Also, the considerable differences to be found in the energy balances of the different systems are discussed in the light of efforts to substitute nuclear and fossil-fuel generated power. Cost and energetic comparisons are also made between compost and artificial fertilisers. The report is concluded with recommendations for adapting bio-technological methods for the treatment of wastes with an emphasis on anaerobic processes.

  15. BAECC Biogenic Aerosols - Effects on Clouds and Climate

    Energy Technology Data Exchange (ETDEWEB)

    Petäjä, Tuukka [Univ. of Helsinki (Finland); Moisseev, Dmitri [Univ. of Helsinki (Finland); Sinclair, Victoria [Univ. of Helsinki (Finland); O' Connor, Ewan J. [Finnish Meteorological Institute, Helsinki (Finland); Manninen, Antti J. [Univ. of Helsinki (Finland); Levula, Janne [Univ. of Helsinki (Finland); Väänänen, Riikka [Univ. of Helsinki (Finland); Heikkinen, Liine [Univ. of Helsinki (Finland); Äijälä, Mikko [Univ. of Helsinki (Finland); Aalto, Juho [Univ. of Helsinki (Finland); Bäck, Jaana [University of Helsinki, Finland

    2015-11-01

    Biogenic Aerosols - Effects on Clouds and Climate (BAECC)”, featured the U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) Program’s 2nd Mobile Facility (AMF2) in Hyytiälä, Finland. It operated for an 8-month intensive measurement campaign from February to September 2014. The main research goal was to understand the role of biogenic aerosols in cloud formation. One of the reasons to perform BAECC study in Hyytiälä was the fact that it hosts SMEAR-II (Station for Measuring Forest Ecosystem-Atmosphere Relations), which is one of the world’s most comprehensive surface in-situ observation sites in a boreal forest environment. The station has been measuring atmospheric aerosols, biogenic emissions and an extensive suite of parameters relevant to atmosphere-biosphere interactions continuously since 1996. The BAECC enables combining vertical profiles from AMF2 with surface-based in-situ SMEAR-II observations and allows the processes at the surface to be directly related to processes occurring throughout the entire tropospheric column. With the inclusion of extensive surface precipitation measurements, and intensive observation periods involving aircraft flights and novel radiosonde launches, the complementary observations of AMF2 and SMEAR-II provide a unique opportunity for investigating aerosol-cloud interactions, and cloud-to-precipitation processes. The BAECC dataset will initiate new opportunities for evaluating and improving models of aerosol sources and transport, cloud microphysical processes, and boundary-layer structures.

  16. Can introduction of hydraulic fracturing fluids induce biogenic methanogenesis in the shale reservoirs?

    Science.gov (United States)

    Sharma, S.; Wilson, T.; Wrighton, K. C.; Borton, M.; O'Banion, B.

    2017-12-01

    The hydraulic fracturing fluids (HFF) injected into the shale formation are composed primarily of water, proppant and some chemical additives ( 0.5- 2% by volume). The additives contain a lot of organic and inorganic compounds like ammonium sulfate, guar gum, boric acid, hydrochloric acid, citric acid, potassium carbonate, glutaraldehyde, ethylene glycols which serve as friction reducers, gelling agents, crosslinkers, biocides, corrosion/scale inhibitors, etc. The water and additives introduced into the formation ensue a variety of microbiogechmical reactions in the reservoir. For this study produced, water and gas samples were collected from several old and new Marcellus wells in SE Pennsylvania and NE West Virginia to better understand these microbe-water-rock interactions. The carbon isotopic composition of dissolved inorganic carbon (δ13CDIC) in the produced fluids and CO2 in produced gas (δ13CCO2) are highly enriched with values > +10‰ and +14 ‰ V-PDB respectively. The injected hydraulic fracturing fluid had low δ13CDIC values of < -8‰ V-PDB. The high carbon isotope values in produced fluids and gas possibly indicate 1) dissolution of 13C enriched carbonates in the host rock of reservoir, cement or drilling muds or 2) biogenic methanogenesis in the reservoir. The carbon signatures of carbonates in and around the landing zone and all possible sources of carbon put downhole were analyzed for their 13C signatures. The cement and silica sand had no detectable carbon in them. The drilling mud and carbonate veins had δ13C values of -1.8 and < 2.0 ‰ V-PDB respectively. Therefore, the high δ13CDIC signatures in produced water are possibly due to the microbial utilization of lighter carbon (12C) by microbes or methanogenic bacteria in the reservoir. It is possible that introduction of C containing nutrients like guar, methanol, methylamines, etc. stimulates certain methanogen species in the reservoir to produce biogenic methane. Genomic analysis reveals

  17. Biogenic emissions and CO 2 gas exchange investigated on four Mediterranean shrubs

    Science.gov (United States)

    Hansen, U.; van Eijk, J.; Bertin, N.; Staudt, M.; Kotzias, D.; Seufert, G.; Fugit, J.-L.; Torres, L.; Cecinato, A.; Brancaleoni, E.; Ciccioli, P.; Bomboi, T.

    In order to investigate the impact of plant physiology on emissions of biogenic volatile organic compounds monoterpene emission rates from Rosmarinus officinalis (L.) and Pistacia lentiscus (L.) and isoprene emission rates from Erica arborea (L.) and Myrtus communis (L.) were determined. The study, an activity in the framework of BEMA (Biogenic Emissions in the Mediterranean Area), was carried out in May 1994 at Castelporziano near Rome in Italy, using a dynamic enclosure technique combined with recording CO 2 gas exchange, temperature and irradiance data. The monoterpenes dominating the emission pattern were 1,8-cineol, α-pinene and β-pinene for rosemary and α-pinene, linalool and β-pinene + sabinene for pistachio. Total monoterpene emission rates standardized to 30°C of 1.84 ± 0.24 and 0.35 ± 0.04 μg Cg -1 dw h -1 were found for rosemary and pistachio, respectively (on a leaf dry weight basis). Myrtle emitted 22.2 ± 4.9 μg C g -1 dw h -1 at standard conditions (30°C, PAR 1000 μmol photons m -2 s -1 as isoprene and erica 5.61 μg C g -1 dw h -1 The carbon loss due to terpenoid emissions per photosynthetically carbon uptake was about 0.01-0.1% for the monoterpene emitters. The isoprene emitting shrubs lost 0-0.9% of the assimilated carbon. The rapid induction of emissions in the sun after temporary shading indicates that isoprene emissions were closely linked to photosynthesis. A higher proportion of the assimilated carbon was lost as isoprene under conditions of high light and temperature compared to the morning and evening hours.

  18. Time Resolved Measurements of Primary Biogenic Aerosol Particles in Amazonia

    Science.gov (United States)

    Wollny, A. G.; Garland, R.; Pöschl, U.

    2009-04-01

    Biogenic aerosols are ubiquitous in the Earth's atmosphere and they influence atmospheric chemistry and physics, the biosphere, climate, and public health. They play an important role in the spread of biological organisms and reproductive materials, and they can cause or enhance human, animal, and plant diseases. Moreover, they influence the Earth's energy budget by scattering and absorbing radiation, and they can initiate the formation of clouds and precipitation as cloud condensation and ice nuclei. The composition, abundance, and origin of biogenic aerosol particles and components are, however, still not well understood and poorly quantified. Prominent examples of primary biogenic aerosol particles, which are directly emitted from the biosphere to the atmosphere, are pollen, bacteria, fungal spores, viruses, and fragments of animals and plants. During the Amazonian Aerosol Characterization Experiment (AMAZE-08) a large number of aerosol and gas-phase measurements were taken on a remote site close to Manaus, Brazil, during a period of five weeks in February and March 2008. This presented study is focused on data from an ultraviolet aerodynamic particle sizer (UVAPS, TSI inc.) that has been deployed for the first time in Amazonia. In this instrument, particle counting and aerodynamic sizing over the range of 0.5-20 µm are complemented by the measurement of UV fluorescence at 355 nm (excitation) and 420-575 nm (emission), respectively. Fluorescence at these wavelengths is characteristic for reduced pyridine nucleotides (e.g., NAD(P)H) and for riboflavin, which are specific for living cells. Thus particles exhibiting fluorescence signals can be regarded as "viable aerosols" or "fluorescent bioparticles" (FBAP), and their concentration can be considered as lower limit for the actual abundance of primary biogenic aerosol particles. Data from the UVAPS were averaged over 5 minute time intervals. The presence of bioparticles in the observed size range has been

  19. Transformation of Strontium during formation of biogenic calcium carbonate

    Science.gov (United States)

    Ohnuki, T.; Kozai, N.; Sakamoto, F.; Yamashita, M.; Horiieke, T.; Utsunomiya, S.

    2016-12-01

    Some amounts of radionuclides contaminated water containing 90Sr generated in the Fukushima Daiichi Nuclear Power Plant were leaked to sea water in the port. One of the possible method to eliminate 90Sr is co-precipitated with biogenic carbonates minerals (CCM). Specific bacteria are known to form biogenic CCM in groundwater. In the present study, we have screened specific bacterium to form CCM in saline water, and studied transformation of Sr during biogenic CCM. A marine microbe of strain TK2d, which is screened from Tokyo bay to form CCM in saline solution, was grown in the medium solution contained urea and Sr. The concentratuion of Sr2+ in the solution was monitored by ICP-OES (ICP-OES; 720 Agilent Technologies, Inc., USA) during the formation of biogenic CCM. The precipitates were analyzed by SEM, TEM, and XAFS. When 1.0 mM Sr was dissolved in the medium solution, the concentration of Sr decreased up to 0.02 mM within 10 days, indicating that most of Sr in the solution was eliminated within 10 days. SEM and TEM analyses showed that needle shaped CCM containing Ca and Sr were formed. The CCM was not single crystalline, but poly-crystalline of calcite and aragonite. The elemental mapping showed that Sr was present at the same position of Ca, indicating that Sr was coprecipitated with Ca. The XANES analysis of Sr in the precipitates showed that the XANES spectrum was not the same as that of Sr coprecipitated with an abiotic Ca carbonates. Linear combination fitting of XANES spectra by those of SrCl2 and SrCO3 showed that both Sr2+ and SrCO3 were present in CCM. Longer contact time resulted in higher content of SrCO3, indicating that Sr was incorporated gradually with time into CCM structure. Thus, Sr was changed its chemical species from adsorbed one to the incorporated one in biogenic CCM in saline solution. This work was partially supported by a research grant from the Japan Science and Technology Agency, Japan (research grant No. 260502).

  20. A Hierarchical System for Evaluating the Biogenicity of Metavolcanic- and Ultramafic-Hosted Microalteration Textures in the Search for Extraterrestrial Life.

    Science.gov (United States)

    McLoughlin, Nicola; Grosch, Eugene G

    2015-10-01

    The low-temperature alteration of submarine volcanic glasses has been argued to involve the activity of microorganisms, and analogous fluid-rock-microbial-mediated alteration has also been postulated on Mars. However, establishing the extent to which microbes are involved in volcanic glass alteration has proven to be difficult, and the reliability of resulting textural biosignatures is debated, particularly in the early rock record. We therefore propose a hierarchical scheme to evaluate the biogenicity of candidate textural biosignatures found in altered terrestrial and extraterrestrial basaltic glasses and serpentinized ultramafic rocks. The hierarchical scheme is formulated to give increasing confidence of a biogenic origin and involves (i) investigation of the textural context and syngenicity of the candidate biosignature; (ii) characterization of the morphology and size range of the microtextures; (iii) mapping of the geological and physicochemical variables controlling the occurrence and preservation of the microtextures; (iv) in situ investigation of chemical signatures that are syngenetic to the microtexture; and (v) identification of growth patterns suggestive of biological behavior and redox variations in the host minerals. The scheme results in five categories of candidate biosignature as follows: Category 1 indicates preservation of very weak evidence for biogenicity, Categories 2 through 4 indicate evidence for increasing confidence of a biogenic origin, and Category 5 indicates that biogenic origin is most likely. We apply this hierarchical approach to examine the evidence for a biogenic origin of several examples, including candidate bacterial encrustations in altered pillow lavas, granular and tubular microtextures in volcanic glass from the subseafloor and a Phanerozoic ophiolite, mineralized microtextures in Archean metavolcanic glass, and alteration textures in olivines of the martian meteorite Yamato 000593. The aim of this hierarchical approach

  1. EVAPORATION: a new vapor pressure estimation method for organic molecules including non-additivity and intramolecular interactions

    Science.gov (United States)

    Compernolle, S.; Ceulemans, K.; Müller, J.-F.

    2011-04-01

    We present EVAPORATION (Estimation of VApour Pressure of ORganics, Accounting for Temperature, Intramolecular, and Non-additivity effects), a method to predict vapour pressure p0 of organic molecules needing only molecular structure as input. The method is applicable to zero-, mono- and polyfunctional molecules. A simple formula to describe log10p0(T) is employed, that takes into account both a wide temperature dependence and the non-additivity of functional groups. In order to match the recent data on functionalised diacids an empirical modification to the method was introduced. Contributions due to carbon skeleton, functional groups, and intramolecular interaction between groups are included. Molecules typically originating from oxidation of biogenic molecules are within the scope of this method: carbonyls, alcohols, ethers, esters, nitrates, acids, peroxides, hydroperoxides, peroxy acyl nitrates and peracids. Therefore the method is especially suited to describe compounds forming secondary organic aerosol (SOA).

  2. Microspectroscopic Analysis of Anthropogenic- and Biogenic-Influenced Aerosol Particles during the SOAS Field Campaign

    Science.gov (United States)

    Ault, A. P.; Bondy, A. L.; Nhliziyo, M. V.; Bertman, S. B.; Pratt, K.; Shepson, P. B.

    2013-12-01

    During the summer, the southeastern United States experiences a cooling haze due to the interaction of anthropogenic and biogenic aerosol sources. An objective of the summer 2013 Southern Oxidant and Aerosol Study (SOAS) was to improve our understanding of how trace gases and aerosols are contributing to this relative cooling through light scattering and absorption. To improve understanding of biogenic-anthropogenic interactions through secondary organic aerosol (SOA) formation on primary aerosol cores requires detailed physicochemical characterization of the particles after uptake and processing. Our measurements focus on single particle analysis of aerosols in the accumulation mode (300-1000 nm) collected using a multi orifice uniform deposition impactor (MOUDI) at the Centreville, Alabama SEARCH site. Particles were characterized using an array of microscopic and spectroscopic techniques, including: scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy dispersive X-ray analysis (EDX), and Raman microspectroscopy. These analyses provide detailed information on particle size, morphology, elemental composition, and functional groups. This information is combined with mapping capabilities to explore individual particle spatial patterns and how that impacts structural characteristics. The improved understanding will be used to explore how sources and processing (such as SOA coating of soot) change particle structure (i.e. core shell) and how the altered optical properties impact air quality/climate effects on a regional scale.

  3. Comparison between modelling and experimental measurements of Criegee intermediates from the ozonolysis of biogenic and anthropogenic VOCs

    Science.gov (United States)

    Giorio, Chiara; Campbell, Steven; Bruschi, Maurizio; Archibald, Alexander; Kalberer, Markus

    2017-04-01

    One of the most important reactions in the troposphere is ozonolysis of alkenes contributing to local photochemical smog and global climate change (Vereecken, 2013). Ozonolysis of alkenes occurs with a generally accepted mechanism, in which ozone adds to the double bond of alkenes forming a primary ozonide, which promptly decomposes to form a carbonyl compound and a biradical/zwitterion called Criegee intermediate (CI) (Criegee, 1975). CIs are highly reactive and short-lived and therefore their analysis represents an analytical challenge. We generated CIs in a flow tube by reacting olefinic compounds with ozone and we stabilised them with the volatile spin trap 5,5-dimethyl-pyrroline N-oxide (DMPO) prior to analysis with proton transfer reaction mass spectrometry (PTR-MS). In a recent study we unambiguously identified the structure of the CI-spin trap adducts formed in the ozonolysis of α-pinene (Giorio et al, submitted). Identification was performed and molecular structures of the adducts were determined with mass spectrometry techniques and nuclear magnetic resonance and supported by density functional theory (DFT) calculations (Giorio et al., submitted). We have now expanded the study to the ozonolysis of various biogenic alkenes, including β-pinene, limonene and methacrolein, as well as anthropogenic alkenes, including cis-2-hexene and styrene. As an example, for the ozonolysis of β-pinene both of the expected C1 and C9 CIs have been detected. These measurements indicate that the ratio between the yields of the C9 CI- and the C1 CI- DMPO adducts formed in this system is about 0.1, while theoretical estimates with the model "Master Chemical Mechanism" (MCM) 3.3.1 suggest a ratio of 0.7 (considering the stabilised CIs) (Saunders et al., 2003). This difference is likely due to different reaction rates of the two CIs with the spin trap DMPO. Similarly, for limonene, all three masses corresponding to the CIs from ozone attack to both the endo and the exo double

  4. 40K in the Black Sea: a proxy to estimate biogenic sedimentation

    International Nuclear Information System (INIS)

    Gulin, S.B.; Gulina, L.V.; Sidorov, I.G.; Proskurnin, V.Yu.; Duka, M.S.; Moseichenko, I.N.; Rodina, E.A.

    2014-01-01

    An approach to estimate the rate of biogenic sedimentation in the Black Sea using the naturally occurring radionuclide 40 K has been considered. It allows assessment of the contribution of suspended matter of biological origin to the overall sediment accumulation in the Black Sea coastal, shelf and deep-water areas. Based upon this method, a relationship between the biogenic fraction of the seabed sediments and the water depth has been established with a view to differentiating the contributions of allochthonous and autochthonous suspended matter to the sedimentation rate. Overall, 40 K can be considered as an easily applicable proxy to assess sedimentation rate of biogenic fraction of particulate matter in marine environments. - Highlights: • 40 K-based approach was developed to assess biogenic sedimentation in the Black Sea. • 40 K-derived relationship between biogenic sedimentation and water depth was traced. • 40 K is an easily applicable proxy to estimate rate of biogenic sedimentation in sea

  5. Natural biogenic solid fuels - environmentally relevant characteristics and possible influences. Final report; Naturbelassene biogene Festbrennstoffe - umweltrelevante Eigenschaften und Einflussmoeglichkeiten. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Hartmann, H.; Boehm, T.; Maier, L. [Bayerische Landesanstalt fuer Landtechnik, Friesing-Weihenstephan (Germany). Arbeitsgruppe Festbrennstoffe

    2000-09-01

    The focus of the research, however, lies in the analysis of biofuels which were collected under certain aspects from different field trials. Several influences were regarded: - The kind and level of potassium fertilisation (in collaboration with the University of Hohenheim) - the date of harvesting, tested for triticale (whole plants), festuca grass, set aside hay, and short rotation forestry (poplar and willow) - the rainfall induced leaching of pollutants from the fuel after cutting, tested for set aside hay, wheat straw and grain (whole plants). A structure for an SQL-database was designed, which allows to record a large range of information on each regarded fuel sample. Along with the actual analyses results, many additional characteristics can be regarded, in order to gain a precise specification of the respective biomass type and origin, the analysis method and the data source, including also the geographical location, special treatments and other criteria. An initial series of 1,238 data sets were entered until April 1999. This data were either generated during research projects or they were found in other primary sources from Germany and Austria. Additionally, the data base was broadened by a questioning among 200 relevant institutions or companies. From these sources the most reliable data were selected and applied. (orig.) [German] Den Schwerpunkt der vorliegenden Arbeit bildet jedoch die Analyse von biogenen Brennstoffen, die unter verschiedenen Gesichtspunkten aus verschiedenen Versuchsserien gewonnen wurden. Hierbei wurden unterschiedliche Einfluesse betrachtet bzw. gezielt abgestuft: - Art und Hoehe der Kaliumduengung bei Triticale und Feldgras (in Zusammenarbeit mit dem Institut fuer Pflanzenbau und Gruenlandwirtschaft der Universitaet Hohenheim) - Erntezeitpunkte bei Triticaleganzpflanzen, Rohrschwingel, Landschaftspflegeheu, Pappeln und Weiden - niederschlagsbedingte Auswaschung von Schadelementen nach der Ernte bei Landschaftspflegeheu

  6. On-site monitoring of biogenic emissions from Eucalyptus dunnii leaves using membrane extraction with sorbent interface combined with a portable gas chromatograph system.

    Science.gov (United States)

    Liu, Xinyu; Pawliszyn, Richard; Wang, Limei; Pawliszyn, Janusz

    2004-01-01

    Membrane extraction with sorbent interface, combined with a portable gas chromatograph system (MESI-Portable GC) for continuous on-line monitoring of biogenic volatile organic compounds (BVOCs) emissions (from leaves of Eucalytus dunnii in a greenhouse), is presented herein. A sampling chamber was designed to facilitate the extraction and identification of the BVOCs emitted by the Eucalytus dunnii leaves. Preliminary experiments, including; enrichment times, microtrap temperatures, stripping gas flow rates, and desorption temperatures were investigated to optimize experimental parameters. The main components of BVOCs released by the Eucalytus dunnii leaves were identified by comparing the retention times of peaks with those of authentic standard solutions. They were then confirmed with solid phase microextraction coupled with gas chromatography and mass spectrometry (SPME-GC-MS). BVOC emission profiles of [small alpha]-pinene, eucalyptol, and [gamma]-terpinene emitted by intact and damaged Eucalytus dunnii leaves were obtained. The findings suggest that the MESI-Portable GC system is a simple and useful tool for field monitoring changes in plant emissions as a function of time.

  7. Bidirectional exchange of biogenic volatiles with vegetation: emission sources, reactions, breakdown and deposition

    Science.gov (United States)

    Niinemets, Ülo; Fares, Silvano; Harley, Peter; Jardine, Kolby J.

    2014-01-01

    Biogenic volatile organic compound (BVOC) emissions are widely modeled as inputs to atmospheric chemistry simulations. However, BVOC may interact with cellular structures and neighboring leaves in a complex manner during volatile diffusion from the sites of release to leaf boundary layer and during turbulent transport to the atmospheric boundary layer. Furthermore, recent observations demonstrate that the BVOC emissions are bidirectional, and uptake and deposition of BVOC and their oxidation products are the rule rather than the exception. This review summarizes current knowledge of within-leaf reactions of synthesized volatiles with reactive oxygen species (ROS), uptake, deposition and storage of volatiles and their oxidation products as driven by adsorption on leaf surface and solubilization and enzymatic detoxification inside leaves. The available evidence indicates that due to reactions with ROS and enzymatic metabolism, the BVOC gross production rates are much larger than previously thought. The degree to which volatiles react within leaves and can be potentially taken up by vegetation depends on compound reactivity, physicochemical characteristics, as well as their participation in leaf metabolism. We argue that future models should be based on the concept of bidirectional BVOC exchange and consider modification of BVOC sink/source strengths by within-leaf metabolism and storage. PMID:24635661

  8. Experimental assessment of the liquefaction resistance of calcareous biogenous sands

    Directory of Open Access Journals (Sweden)

    Sandoval Eimar

    2012-10-01

    Full Text Available

    ABSTRACT

    Liquefaction is a phenomenon in which soils, typically sands, suddenly loose a substantial amount of their shear strength and stiffness, this often triggered by large-magnitude earthquakes. Most liquefaction research has focused on silicate-based sands and not on other sand types, such as calcareous biogenous sands Calcareous sands are usually composed of skeletal or non-skeletal remains of marine organisms, with unique characteristics in terms of their mineralogy surface roughness, particle shape, crushability, and intraparticle porosity. The unique characteristics of calcareous sands suggest that their geotechnical engineering behaviour can be substantially different compared to that of terrigenous sands, including their behaviour under seismic loading, which have not been very well studied

    This paper presents the results of an experimental programme aimed at studying the cyclic liquefaction resistance of uncemented calcareous biogenous sands retrieved from south-western Puerto Rico Evaluation of liquefaction potential involved a comprehensive set of isotropically consolidated undrained cyclic triaxial tests on reconstituted samples of this calcareous sand. The programme also included tests on Ottawa terrigenous silica sand samples prepared and tested in similar conditions for comparison purposes.

    In general, the experimental results showed that Cabo Rojo calcareous sands had higher liquefaction resistance compared to Ottawa silica sands tested under similar conditions. Important differences between calcareous and silica sands regarding pore pressure generation characteristics and axial strain accumulation were also observed


  9. Evaluation of biogenic amines and microbial counts throughout the ripening of goat cheeses from pasteurized and raw milk.

    Science.gov (United States)

    Novella-Rodríguez, Sonia; Veciana-Nogués, M Teresa; Roig-Sagués, Artur X; Trujillo-Mesa, Antonio J; Vidal-Carou, M Carmen

    2004-05-01

    The effect of the hygienic quality of milk on changes in microbial counts and biogenic amine content was evaluated during ripening of goat cheeses manufactured from pasteurized and raw milks at 1, 14, 30, 60 and 90 d. The original milk, rennet, curd and whey were also included in the study. The pH, salt content and extent of proteolysis in the cheese were also evaluated. Spermidine and spermine were the main amines in raw milk, while they were minor amines in cheeses. Other amines increased markedly during ripening, tyramine being the main amine in cheese made from raw milk and cadaverine and putrescine in those produced from pasteurized milk. Enterobacteriaceae counts decreased during ripening whereas those of lactic acid bacteria increased, especially lactobacilli and enterococci. Cheese made from raw milk showed higher microbial counts during ripening than those made from pasteurized milk, especially for Enterobacteriaceae and enterococci, counts being 2 or 3 log units higher. Raw milk cheese showed remarkably higher biogenic amines compared with pasteurized milk cheeses. Therefore, pasteurization of milk causes a decrease in final biogenic amine content of cheese as a result of the reduction of its microbial counts.

  10. In Situ Atomic Force Microscopy Studies on Nucleation and Self-Assembly of Biogenic and Bio-Inspired Materials

    Directory of Open Access Journals (Sweden)

    Cheng Zeng

    2017-08-01

    Full Text Available Through billions of years of evolution, nature has been able to create highly sophisticated and ordered structures in living systems, including cells, cellular components and viruses. The formation of these structures involves nucleation and self-assembly, which are fundamental physical processes associated with the formation of any ordered structure. It is important to understand how biogenic materials self-assemble into functional and highly ordered structures in order to determine the mechanisms of biological systems, as well as design and produce new classes of materials which are inspired by nature but equipped with better physiochemical properties for our purposes. An ideal tool for the study of nucleation and self-assembly is in situ atomic force microscopy (AFM, which has been widely used in this field and further developed for different applications in recent years. The main aim of this work is to review the latest contributions that have been reported on studies of nucleation and self-assembly of biogenic and bio-inspired materials using in situ AFM. We will address this topic by introducing the background of AFM, and discussing recent in situ AFM studies on nucleation and self-assembly of soft biogenic, soft bioinspired and hard materials.

  11. Control of Biogenic Amines in Fermented Sausages: Role of Starter Cultures

    Science.gov (United States)

    Latorre-Moratalla, M.L.; Bover-Cid, Sara; Veciana-Nogués, M.T.; Vidal-Carou, M.C.

    2012-01-01

    Biogenic amines show biological activity and exert undesirable physiological effects when absorbed at high concentrations. Biogenic amines are mainly formed by microbial decarboxylation of amino acids and thus are usually present in a wide range of foods, fermented sausages being one of the major biogenic amine sources. The use of selected starter cultures is one of the best technological measures to control aminogenesis during meat fermentation. Although with variable effectiveness, several works show the ability of some starters to render biogenic amine-free sausages. In this paper, the effect of different starter culture is reviewed and the factors determining their performance discussed. PMID:22586423

  12. Control of biogenic amines in fermented sausages: role of starter cultures

    Directory of Open Access Journals (Sweden)

    Mariluz eLatorre-Moratalla

    2012-05-01

    Full Text Available Biogenic amines show biological activity and exert undesirable physiological effects when absorbed at high concentrations. Biogenic amines are mainly formed by microbial decarboxylation of amino acids and thus are usually present in a wide range of foods, fermented sausages being one of the major biogenic amine sources. The use of selected starter cultures is one of the best technological measures to control aminogenesis during meat fermentation. Although with variable effectiveness, several works show the ability of some starters to render biogenic amine-free sausages. In this paper, the effect of different starter culture is reviewed and the factors determining their performance discussed.

  13. Determination of biogenic component in waste and liquid fuels by the 14C method

    OpenAIRE

    Krajcar Bronić, Ines; Barešić, Jadranka; Horvatinčić, Nada

    2015-01-01

    Intensive use of fossil fuels for energy production and transport during 20th century caused an increase of CO2 concentration in the atmosphere. The increase of CO2 concentration can be slowed down by the use of biogenic materials for energy production and/or transport. One of the method for determination of the fraction of the biogenic component in any type of fuel or waste is the 14C method, which is based on different content of 14C in biogenic and in fossil component: while the biogenic c...

  14. Observations of biogenic isoprene emissions and atmospheric chemistry components at the Savé super site in Benin, West Africa, during the DACCIWA field campaign.

    Science.gov (United States)

    Jambert, Corinne; Pacifico, Federica; Delon, Claire; Lohou, Fabienne; Reinares Martinez, Irene; Brilouet, Pierre-Etienne; Derrien, Solene; Dione, Cheikh; Brosse, Fabien; Gabella, Omar; Pedruzzo Bagazgoitia, Xavier; Durand, Pierre

    2017-04-01

    Tropospheric oxidation of VOCs (Volatile Organic Compounds), including isoprene, in the presence of NOx and sunlight leads to the formation of O3 and Secondary Organic Aerosols (SOA). Changes in NO or VOCs sources will consequently modify their atmospheric concentrations and thus, the rate of O3 production and SOA formation. NOx have also an impact on the abundance of the hydroxyl radical (OH) which determines the lifetime of some pollutants and greenhouse gases. Anthropogenic emissions of pollutants from mega cities located on the Guinean coast in South West Africa are likely to increase in the next decades due to a strong anthropogenic pressure and to land use changes at the regional or continental scale. The consequences on regional air quality and on pollutant deposition onto surfaces may have some harmful effects on human and ecosystem health. Furthermore, the regional climate and water cycle are affected by changes in atmospheric chemistry. When transported northward on the African continent, polluted air masses meet biogenic emissions from rural areas which contributes to increase ozone and SOA production, in high temperature and solar radiation conditions, highly favourable to enhanced photochemistry. During the Dynamics-aerosol-chemistry-cloud interactions in West Africa (DACCIWA) field campaign, we measured the atmospheric chemical composition and the exchanges of trace components in a hinterland area of Benin, at the Savé super-site (8°02'03" N, 2°29'11″ E). The observations, monitored in June and July 2016, in a rural mixed agricultural area, include near surface concentrations of ozone (O3), carbon monoxide (CO), nitrogen oxides (NOx) and isoprene, isoprene fluxes and meteorological parameters. We observed hourly average concentrations of O3 up to 50 ppb, low NOx concentrations (ca. 1 ppb and CO concentrations between 75 and 300 ppb. An 8 m tower was equipped with a Fast Isoprene Sensor and sonic anemometer to measure isoprene concentrations and

  15. Formation and Reactivity of Biogenic Iron Minerals

    International Nuclear Information System (INIS)

    Ferris, F. Grant

    2002-01-01

    Dissimilatory iron-reducing bacteria (DIRB) play an important role in regulating the aqueous geochemistry of iron and other metals in anaerobic, non-sulfidogenic groundwater environments; however, little work has directly assessed the cell surface electrochemistry of DIRB, or the nature of the interfacial environment around individual cells. The electrochemical properties of particulate solids are often inferred from titrations in which net surface charge is determined, assuming electroneutrality, as the difference between known added amounts of acid and base and measured proton concentration. The resultant titration curve can then be fit to a speciation model for the system to determine pKa values and site densities of reactive surface sites. Moreover, with the development of non-contact electrostatic force microscopy (EFM), it is now possible to directly inspect and quantify charge development on surfaces. A combination of acid-base titrations and EFM are being used to assess the electrochemical surface properties of the groundwater DIRB, Shewanella putrefaciens. The pKa spectra and EFM data show together that a high degree of electrochemical heterogeneity exists within the cell wall and at the cell surface of S. putrefaciens. Recognition of variations in the nature and spatial distribution of reactive sites that contribute to charge development on these bacteria implies further that the cell surface of these Fe(III)-reducing bacteria functions as a highly differentiated interfacial system capable of supporting multiple intermolecular interactions with both solutes and solids. These include surface complexation reactions involving dissolved metals, as well as adherence to mineral substrates such as hydrous ferric oxide through longer-range electrostatic interactions, and surface precipitation of secondary reduced-iron minerals

  16. Evaluating Global Emission Inventories of Biogenic Bromocarbons

    Science.gov (United States)

    Hossaini, Ryan; Mantle, H.; Chipperfield, M. P.; Montzka, S. A.; Hamer, P.; Ziska, F.; Quack, B.; Kruger, K.; Tegtmeier, S.; Atlas, E.; hide

    2013-01-01

    Emissions of halogenated very short-lived substances (VSLS) are poorly constrained. However, their inclusion in global models is required to simulate a realistic inorganic bromine (Bry) loading in both the troposphere, where bromine chemistry perturbs global oxidizing capacity, and in the stratosphere, where it is a major sink for ozone (O3). We have performed simulations using a 3-D chemical transport model (CTM) including three top-down and a single bottom-up derived emission inventory of the major brominated VSLS bromoform (CHBr3) and dibromomethane (CH2Br2). We perform the first concerted evaluation of these inventories, comparing both the magnitude and spatial distribution of emissions. For a quantitative evaluation of each inventory, model output is compared with independent long-term observations at National Oceanic and Atmospheric Administration (NOAA) ground-based stations and with aircraft observations made during the NSF (National Science Foundation) HIAPER Pole-to-Pole Observations (HIPPO) project. For CHBr3, the mean absolute deviation between model and surface observation ranges from 0.22 (38 %) to 0.78 (115 %) parts per trillion (ppt) in the tropics, depending on emission inventory. For CH2Br2, the range is 0.17 (24 %) to 1.25 (167 %) ppt. We also use aircraft observations made during the 2011 Stratospheric Ozone: Halogen Impacts in a Varying Atmosphere (SHIVA) campaign, in the tropical western Pacific. Here, the performance of the various inventories also varies significantly, but overall the CTM is able to reproduce observed CHBr3 well in the free troposphere using an inventory based on observed sea-to-air fluxes. Finally, we identify the range of uncertainty associated with these VSLS emission inventories on stratospheric bromine loading due to VSLS (Br(VSLS/y)). Our simulations show Br(VSLS/y) ranges from approximately 4.0 to 8.0 ppt depending on the inventory. We report an optimized estimate at the lower end of this range (approximately 4 ppt

  17. Biogenic volatile organic compounds as a potential stimulator for organic contaminant degradation by soil microorganisms

    International Nuclear Information System (INIS)

    McLoughlin, Emma; Rhodes, Angela H.; Owen, Susan M.; Semple, Kirk T.

    2009-01-01

    The effects of monoterpenes on the degradation of 14 C-2,4-dichlorophenol (DCP) were investigated in soils collected from areas surrounding monoterpene and non-monoterpene-emitting vegetation. Indigenous microorganisms degraded 14 C-2,4-DCP to 14 CO 2 , after 1 d contact time. Degradation was enhanced by prior exposure of the soils to 2,4-DCP for 32 d, increasing extents of mineralisation up to 60%. Monoterpene amendments further enhanced 2,4-DCP degradation, but only following pre-exposure to both 2,4-DCP and monoterpene, with total 2,4-DCP mineralisation extents of up to 71%. Degradation was greatest at the higher monoterpene concentrations (≥1 μg kg -1 ). Total mineralisation extents were similar between concentrations, but higher than the control and the 0.1 μg kg -1 amendment, indicating that increases in monoterpene concentration has a diminishing enhancing effect. We suggest that monoterpenes can stimulate the biodegradation of 2,4-DCP by indigenous soil microorganisms and that monoterpene amendment in soils is an effective strategy for removing organic contaminants. - A amendment of soils with monoterpenes may induce organic contaminant degradation by indigenous soil microorganisms

  18. Mass spectrometric analysis of stable carbon isotopes in abiogenic and biogenic natural compounds

    International Nuclear Information System (INIS)

    Sajjad, M.I.; Ahmed, M.; Tasneem, M.A.; Khan, I.A.; Latif, Z.

    1989-07-01

    This report describes the general methodology of sup/13/ carbon analysis on mass spectrometer and various preparation systems developed for conversion of samples into isotopically non-fractionated and purified carbon dioxide. Laboratory standards required for sup/13/ C analysis have been calibrated against international standards. The reproducibility/accuracy of sample preparation and analysis on mass spectrometer for sup/13/ C or sup/12/ C measurement is well within the internationally acceptable limits. (author)

  19. Biogenic volatile organic compound emissions along a high arctic soil moisture gradient

    DEFF Research Database (Denmark)

    Svendsen, Sarah Hagel; Lindwall, Frida; Michelsen, Anders

    2016-01-01

    emissions from a high arctic soil moisture gradient extending from dry tundra to a wet fen. Ecosystem BVOC emissions were sampled five times in the July-August period using a push-pull enclosure technique, and BVOCs trapped in absorbent cartridges were analyzed using gas chromatography-mass spectrometry...

  20. Fluxes of biogenic volatile organic compounds above temperate Norway spruce forest of the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Juráň, Stanislav; Pallozi, E.; Guidolotti, G.; Fares, S.; Šigut, Ladislav; Calfapietra, Carlo; Alivernini, A.; Savi, F.; Večeřová, Kristýna; Křůmal, Kamil; Večeřa, Zbyněk; Urban, Otmar

    2017-01-01

    Roč. 232, JAN (2017), s. 500-513 ISSN 0168-1923 R&D Projects: GA MŠk(CZ) LO1415; GA MŠk(CZ) LD13031; GA MŠk(CZ) LM2015061; GA ČR(CZ) GA13-28093S Institutional support: RVO:67179843 ; RVO:68081715 Keywords : Monoterpenes * Isoprene * Proton-transfer-reaction-time-of-flight mass spectrometry (PTR-TOF-MS) * Fluxes * Lagrangian model * MEGAN Subject RIV: EH - Ecology, Behaviour; CB - Analytical Chemistry, Separation (UIACH-O) OBOR OECD: Environmental sciences (social aspects to be 5.7); Analytical chemistry (UIACH-O) Impact factor: 3.887, year: 2016

  1. Arctic Vegetation under Climate Change – Biogenic Volatile Organic Compound Emissions and Leaf Anatomy

    DEFF Research Database (Denmark)

    Schollert, Michelle

    measurements in this thesis were performed using a dynamic enclosure system and collection of BVOCs into adsorbent cartridges analyzed by gas chromatography-mass spectrometry following thermal desorption. Also modifications in leaf anatomy in response to the studied effects of climate change were assessed...

  2. Extracellular Proteins Limit the Dispersal of BiogenicNanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Moreau, John W.; Weber, Peter K.; Martin, Michael C.; Gilbert,Benjamin; Hutcheon, Ian D.; Banfield, Jillian F.

    2007-04-27

    High spatial-resolution secondaryion microprobespectrometry, synchrotron radiation Fourier-transform infraredspectroscopy and polyacrylamide gel analysis demonstrate the intimateassociation of proteins with spheroidal aggregates of biogenic zincsulfide nanocrystals, an example of extracellular biomineralization.Experiments involving synthetic ZnS nanoparticles and representativeamino acids indicate a driving role for cysteine in rapid nanoparticleaggregation. These findings suggest that microbially-derivedextracellular proteins can limit dispersal of nanoparticulatemetal-bearing phases, such as the mineral products of bioremediation,that may otherwise be transported away from their source by subsurfacefluid flow.

  3. Pulmonary extraction of biogenic amines during septic shock

    International Nuclear Information System (INIS)

    Kerstein, M.D.; Kohler, J.; Gould, S.; Moseley, P.

    1982-01-01

    The effect of live Escherichia coli on the pulmonary extraction of the biogenic amines 14 C 5-hydroxytryptamine, (5-HT) and 3 H-epinephrine was investigated. The labeled isotopes were injected into a central venous catheter and collected from an aortic catheter. One hundred per cent of the labeled epinephrine was recovered in the control and septic state. Only 32.8 +/- 3.6% SEM of the 5-hydroxytryptamine was recovered before sepsis and 42.5 +/- 4.9% SEM after sepsis. During sepsis, mean arterial pressure fell to 58 mm Hg from 121 mm Hg. Pulmonary shunt increased from .7 +/- .05 SEM to .33 +/- .09 SEM

  4. Direct ecosystem fluxes of volatile organic compounds from oil palms in South-East Asia

    Directory of Open Access Journals (Sweden)

    P. K. Misztal

    2011-09-01

    Full Text Available This paper reports the first direct eddy covariance fluxes of reactive biogenic volatile organic compounds (BVOCs from oil palms to the atmosphere using proton-transfer-reaction mass spectrometry (PTR-MS, measured at a plantation in Malaysian Borneo. At midday, net isoprene flux constituted the largest fraction (84 % of all emitted BVOCs measured, at up to 30 mg m−2 h−1 over 12 days. By contrast, the sum of its oxidation products methyl vinyl ketone (MVK and methacrolein (MACR exhibited clear deposition of 1 mg m−2 h−1, with a small average canopy resistance of 230 s m−1. Approximately 15 % of the resolved BVOC flux from oil palm trees could be attributed to floral emissions, which are thought to be the largest reported biogenic source of estragole and possibly also toluene. Although on average the midday volume mixing ratio of estragole exceeded that of toluene by almost a factor of two, the corresponding fluxes of these two compounds were nearly the same, amounting to 0.81 and 0.76 mg m−2 h−1, respectively. By fitting the canopy temperature and PAR response of the MEGAN emissions algorithm for isoprene and other emitted BVOCs a basal emission rate of isoprene of 7.8 mg m−2 h−1 was derived. We parameterise fluxes of depositing compounds using a resistance approach using direct canopy measurements of deposition. Consistent with Karl et al. (2010, we also propose that it is important to include deposition in flux models, especially for secondary oxidation products, in order to improve flux predictions.

  5. EVAPORATION: a new vapour pressure estimation methodfor organic molecules including non-additivity and intramolecular interactions

    Directory of Open Access Journals (Sweden)

    S. Compernolle

    2011-09-01

    Full Text Available We present EVAPORATION (Estimation of VApour Pressure of ORganics, Accounting for Temperature, Intramolecular, and Non-additivity effects, a method to predict (subcooled liquid pure compound vapour pressure p0 of organic molecules that requires only molecular structure as input. The method is applicable to zero-, mono- and polyfunctional molecules. A simple formula to describe log10p0(T is employed, that takes into account both a wide temperature dependence and the non-additivity of functional groups. In order to match the recent data on functionalised diacids an empirical modification to the method was introduced. Contributions due to carbon skeleton, functional groups, and intramolecular interaction between groups are included. Molecules typically originating from oxidation of biogenic molecules are within the scope of this method: aldehydes, ketones, alcohols, ethers, esters, nitrates, acids, peroxides, hydroperoxides, peroxy acyl nitrates and peracids. Therefore the method is especially suited to describe compounds forming secondary organic aerosol (SOA.

  6. Antifouling Compounds from Marine Macroalgae.

    Science.gov (United States)

    Dahms, Hans Uwe; Dobretsov, Sergey

    2017-08-28

    Marine macroalgae produce a wide variety of biologically-active metabolites that have been developed into commercial products, such as antibiotics, immunosuppressive, anti-inflammatory, cytotoxic agents, and cosmetic products. Many marine algae remain clean over longer periods of time, suggesting their strong antifouling potential. Isolation of biogenic compounds and the determination of their structure could provide leads for the development of environmentally-friendly antifouling paints. Isolated substances with potent antifouling activity belong to fatty acids, lipopeptides, amides, alkaloids, lactones, steroids, terpenoids, and pyrroles. It is unclear as yet to what extent symbiotic microorganisms are involved in the synthesis of these compounds. Algal secondary metabolites have the potential to be produced commercially using genetic and metabolic engineering techniques. This review provides an overview of publications from 2010 to February 2017 about antifouling activity of green, brown, and red algae. Some researchers were focusing on antifouling compounds of brown macroalgae, while metabolites of green algae received less attention. Several studies tested antifouling activity against bacteria, microalgae and invertebrates, but in only a few studies was the quorum sensing inhibitory activity of marine macroalgae tested. Rarely, antifouling compounds from macroalgae were isolated and tested in an ecologically-relevant way.

  7. A UHPLC method for the simultaneous analysis of biogenic amines, amino acids and ammonium ions in beer.

    Science.gov (United States)

    Redruello, Begoña; Ladero, Victor; Del Rio, Beatriz; Fernández, María; Martin, M C; Alvarez, Miguel A

    2017-02-15

    This paper reports a novel UHPLC method for simultaneously quantifying nine biogenic amines, 21 amino acids, and ammonium ions, in beer. Precision values of standard curves slopes were lower than 3.4% and recovery was between 85% and 106%, indicating the absence of matrix effect. Linear calibration curves were obtained for analyte concentrations between two and four orders of magnitude (R(2)>0.996). Repeatability tests returned mean variations of 3.2% and 0.5% for beer and a standard solution, respectively. Sensitivity ranged between 0.03mg/L and 0.63mg/L for the biogenic amines, and 0.05mg/L and 5.19mg/L for other compounds. Original data on the habitual presence of ethanolamine in beers are presented. The method allows for more samples to be assayed per unit time, it uses less solvent than other techniques and therefore reduces costs and the associated waste. It could be a valuable tool for monitoring the safety and quality of beers. Copyright © 2016 Elsevier Ltd. All rights reserved.

  8. Technological factors affecting biogenic amine content in foods: a review

    Directory of Open Access Journals (Sweden)

    Fausto Gardini

    2016-08-01

    Full Text Available Biogenic amines (BAs are molecules which can be present in foods and, due to their toxicity, can cause adverse effects on the consumers. BAs are generally produced by microbial decarboxylation of amino acids in food products. The most significant BAs occurring in foods are histamine, tyramine, putrescine, cadaverine, tryptamine, 2-phenylethylamine, spermine, spermidine and agmatine. The importance of preventing the excessive accumulation of BAs in food is related to their impact on human health and food quality. Quality criteria in connection with the presence of BAs in food and food products are necessary from a toxicological point of view. This is particularly important in fermented foods in which the massive microbial proliferation required for obtaining specific products is often relater with BA accumulation. In this review, up-to-date information and recent discoveries about technological factors affecting biogenic amine content in foods are reviewed. Specifically, BA forming-microorganism and decarboxylation activity, genetic and metabolic organization of decarboxylases, risk associated to BAs (histamine, tyramine toxicity and other BAs, environmental factors influencing BA formation (temperature, salt concentration, pH. In addition, the technological factors for controlling BA production (use of starter culture, technological additives, effects of packaging, other non-thermal treatments, metabolising BA by microorganisms, effects of pressure treatments on BA formation and antimicrobial substances are addressed.

  9. Biogenic magnetite as a primary remanence carrier in limestone deposits

    Science.gov (United States)

    Chang, Shih-Bin R.; Kirschvink, Joseph L.; Stolz, John F.

    1987-06-01

    Studies on the microbial communities and magnetic phases of samples collected from carbonate oozes at Sugarloaf Key, FL, U.S.A. and calcareous laminated sediments from Laguna Figueroa, Baja California, Mexico have revealed the existence of magnetotactic bacteria and ultrafine-grained single domain magnetite in both environments. Magnetotactic bacteria were identified by light and electron microscopy. The single domain magnetite was detected by coercivity spectra analysis with a SQUID magnetometer and examined under the transmission electron microscope. The similarity, in terms of size and shape, between the single domain magnetite found in these sediments and the magnetite observed in the bacterial magnetosome from enriched cultures indicates the ultrafine-grained magnetite in these two marine environments was biologically formed. These results, combined with the common occurrences of ultrafine-grained magnetite in limestone deposits detected rock magnetically, suggest biogenic magnetite may be present and contribute to the magnetic remanence in these rocks. Several Cambrian limestone samples, separately collected from Siberia, China, and Kazakhstan, were examined for the presence of bacterial magnetite. Samples from the Lower Cambrian Sinskian Formation at Siberia Platform were found to contain both a large amount of apparently bacterial magnetite particles and a very stable primary magnetic component. Post-Cambrian diagenesis does not seem to affect the microgranulometry of these apparently bacterial magnetite crystals or the magnetic remanence carried by them. Assessing the potential role of biogenic magnetite as a primary remanence carrier in other Phanerozoic limestone deposits ought to be further pursued.

  10. Antimicrobial textiles: Biogenic silver nanoparticles against Candida and Xanthomonas.

    Science.gov (United States)

    Ballottin, Daniela; Fulaz, Stephanie; Cabrini, Flávia; Tsukamoto, Junko; Durán, Nelson; Alves, Oswaldo L; Tasic, Ljubica

    2017-06-01

    This paper introduces cotton fibers impregnated with biogenic silver nanoparticles (AgNPs), synthesized from a Fusarium oxysporum fungal filtrate (FF) solution, and open up the possibility for their use in medical environment and agriculture clothing as means to avoid microbial spreading. After thorough AgNPs characterization, regarding their physical, chemical and biochemical properties, Minimum Inhibitory Concentrations (MIC) against some human and orange tree pathogens were determined. We report the strong AgNPs activity against Candida parapsilosis and Xanthomonas axonopodis pv. citri (Xac) that was morphologically characterized, pointing to strong AgNPs effects on microorganisms' membranes. Cotton fibers were then impregnated with AgNPs suspension and these maintained strong antimicrobial activity even after repeated mechanical washing cycles (up to 10). Reported data might point to an application for biogenic AgNPs as potent agrochemicals, as well as, to their application in textiles for antiseptic clothing for medical and agronomic applications. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. Measurement of carbon storage in landfills from the biogenic carbon content of excavated waste samples.

    Science.gov (United States)

    De la Cruz, Florentino B; Chanton, Jeffrey P; Barlaz, Morton A

    2013-10-01

    Landfills are an anaerobic ecosystem and represent the major disposal alternative for municipal solid waste (MSW) in the U.S. While some fraction of the biogenic carbon, primarily cellulose (Cel) and hemicellulose (H), is converted to carbon dioxide and methane, lignin (L) is essentially recalcitrant. The biogenic carbon that is not mineralized is stored within the landfill. This carbon storage represents a significant component of a landfill carbon balance. The fraction of biogenic carbon that is not reactive in the landfill environment and therefore stored was derived for samples of excavated waste by measurement of the total organic carbon, its biogenic fraction, and the remaining methane potential. The average biogenic carbon content of the excavated samples was 64.6±18.0% (average±standard deviation), while the average carbon storage factor was 0.09±0.06g biogenic-C stored per g dry sample or 0.66±0.16g biogenic-C stored per g biogenic C. Published by Elsevier Ltd.

  12. Biogenic Carbon Fraction of Biogas and Natural Gas Fuel Mixtures Determined with 14C

    NARCIS (Netherlands)

    Palstra, Sanne W. L.; Meijer, Harro A. J.

    2014-01-01

    This study investigates the accuracy of the radiocarbon-based calculation of the biogenic carbon fraction for different biogas and biofossil gas mixtures. The focus is on the uncertainty in the C-14 reference values for 100% biogenic carbon and on the C-13-based isotope fractionation correction of

  13. 77 FR 21772 - Notification of Two Public Teleconferences of the Science Advisory Board Biogenic Carbon...

    Science.gov (United States)

    2012-04-11

    ... of Air and Radiation requested SAB review of EPA's draft accounting framework. As noticed in 76 FR... review and discuss its advice on EPA's draft Accounting Framework for Biogenic CO2 Emissions from... Accounting Framework for Biogenic CO2 Emissions from Stationary Sources (September 2011). DATES: The public...

  14. DEVELOPMENT OF SEASONAL AND ANNUAL BIOGENIC EMISSIONS INVENTORIES FOR THE U.S. AND CANADA

    Science.gov (United States)

    The report describes the development of a biogenic emissions inventory for the U.S. and Canada, to assess the role of biogenic emissions in ozone formation. Emission inventories were developed at hourly and grid (1/4 x 116 degree) level from input data at the same scales. Emissio...

  15. Biogenic silica in space and time in sediments of Central Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Pattan, J.N.; Gupta, S.M.; Mudholkar, A.V.; Parthiban, G.

    rate averages 2.25 x 10/5 g.cm/2.y/1 and it is contributed from 33 to 50% of the total silica. Higher biogenic silica content of the surface sediment is well correlated with Mn, Cu and Ni concentration of the overlying manganese nodules. Higher biogenic...

  16. Gigantism in unique biogenic magnetite at the Paleocene–Eocene Thermal Maximum

    Science.gov (United States)

    Schumann, Dirk; Raub, Timothy D.; Kopp, Robert E.; Guerquin-Kern, Jean-Luc; Wu, Ting-Di; Rouiller, Isabelle; Smirnov, Aleksey V.; Sears, S. Kelly; Lücken, Uwe; Tikoo, Sonia M.; Hesse, Reinhard; Kirschvink, Joseph L.; Vali, Hojatollah

    2008-01-01

    We report the discovery of exceptionally large biogenic magnetite crystals in clay-rich sediments spanning the Paleocene–Eocene Thermal Maximum (PETM) in a borehole at Ancora, NJ. Aside from previously described abundant bacterial magnetofossils, electron microscopy reveals novel spearhead-like and spindle-like magnetite up to 4 μm long and hexaoctahedral prisms up to 1.4 μm long. Similar to magnetite produced by magnetotactic bacteria, these single-crystal particles exhibit chemical composition, lattice perfection, and oxygen isotopes consistent with an aquatic origin. Electron holography indicates single-domain magnetization despite their large crystal size. We suggest that the development of a thick suboxic zone with high iron bioavailability—a product of dramatic changes in weathering and sedimentation patterns driven by severe global warming—drove diversification of magnetite-forming organisms, likely including eukaryotes. PMID:18936486

  17. Ophiuroids (Echinodermata; Ophiuroidea) of biogenic habitats on the continental shelf of New Zealand.

    Science.gov (United States)

    Mills, V Sadie; O'Hara, Timothy D

    2013-02-13

    The taxonomy of ophiuroids collected in 2009 and 2011, from biogenic habitats across the New Zealand continental shelf, is reviewed. Ophionereis novaezelandiae Mortensen, 1936, and its junior synonym Ophionereis terba Baker & Devaney, 1981 from South-Eastern Australia, is now recognised as a distinct species, and has been removed from synonymy with Ophionereis fasciata Hutton, 1872. Ophiacantha abyssicola var. otagoensis Fell, 1958 is also recognised as a distinct species and has been removed from synonymy with Ophiacantha brachygnatha Clark H L, 1928. Amphiura eugeniae var. latisquama Mortensen, 1924 is raised to species rank and Amphioplus longirima Fell, 1952 treated as a synonym of A. latisquama. Ophiolycus farquhari McKnight, 2003 is transferred to the genus Ophiologimus. The diagnostic characters of several other species are reviewed and colour descriptions and images are included where available. The tropical species Ophiacantha longidens Lyman, 1878, Ophiotreta valenciennesi (Lyman, 1879) and Ophiobyrsa intorta (Koehler, 1922) are reported from New Zealand waters for the first time.

  18. Temperature-dependent release of volatile organic compounds of eucalypts by direct analysis in real time (DART) mass spectrometry.

    Science.gov (United States)

    Maleknia, Simin D; Vail, Teresa M; Cody, Robert B; Sparkman, David O; Bell, Tina L; Adams, Mark A

    2009-08-01

    A method is described for the rapid identification of biogenic, volatile organic compounds (VOCs) emitted by plants, including the analysis of the temperature dependence of those emissions. Direct analysis in real time (DART) enabled ionization of VOCs from stem and leaf of several eucalyptus species including E. cinerea, E. citriodora, E. nicholii and E. sideroxylon. Plant tissues were placed directly in the gap between the DART ionization source skimmer and the capillary inlet of the time-of-flight (TOF) mass spectrometer. Temperature-dependent emission of VOCs was achieved by adjusting the temperature of the helium gas into the DART ionization source at 50, 100, 200 and 300 degrees C, which enabled direct evaporation of compounds, up to the onset of pyrolysis of plant fibres (i.e. cellulose and lignin). Accurate mass measurements facilitated by TOF mass spectrometry provided elemental compositions for the VOCs. A wide range of compounds was detected from simple organic compounds (i.e. methanol and acetone) to a series of monoterpenes (i.e. pinene, camphene, cymene, eucalyptol) common to many plant species, as well as several less abundant sesquiterpenes and flavonoids (i.e. naringenin, spathulenol, eucalyptin) with antioxidant and antimicrobial properties. The leaf and stem tissues for all four eucalypt species showed similar compounds. The relative abundances of methanol and ethanol were greater in stem wood than in leaf tissue suggesting that DART could be used to investigate the tissue-specific transport and emissions of VOCs. Copyright (c) 2009 John Wiley & Sons, Ltd.

  19. What do correlations tell us about anthropogenic–biogenic interactions and SOA formation in the Sacramento plume during CARES?

    Directory of Open Access Journals (Sweden)

    L. Kleinman

    2016-02-01

    Full Text Available During the Carbonaceous Aerosols and Radiative Effects Study (CARES the US Department of Energy (DOE G-1 aircraft was used to sample aerosol and gas phase compounds in the Sacramento, CA, plume and surrounding region. We present data from 66 plume transects obtained during 13 flights in which southwesterly winds transported the plume towards the foothills of the Sierra Nevada. Plume transport occurred partly over land with high isoprene emission rates. Our objective is to empirically determine whether organic aerosol (OA can be attributed to anthropogenic or biogenic sources, and to determine whether there is a synergistic effect whereby OA concentrations are enhanced by the simultaneous presence of high concentrations of carbon monoxide (CO and either isoprene, MVK + MACR (sum of methyl vinyl ketone and methacrolein, or methanol, which are taken as tracers of anthropogenic and biogenic emissions, respectively. Linear and bilinear correlations between OA, CO, and each of three biogenic tracers, “Bio”, for individual plume transects indicate that most of the variance in OA over short timescales and distance scales can be explained by CO. For each transect and species a plume perturbation, (i.e., ΔOA, defined as the difference between 90th and 10th percentiles was defined and regressions done amongst Δ values in order to probe day-to-day and location-dependent variability. Species that predicted the largest fraction of the variance in ΔOA were ΔO3 and ΔCO. Background OA was highly correlated with background methanol and poorly correlated with other tracers. Because background OA was  ∼  60 % of peak OA in the urban plume, peak OA should be primarily biogenic and therefore non-fossil, even though the day-to-day and spatial variability of plume OA is best described by an anthropogenic tracer, CO. Transects were split into subsets according to the percentile rankings of ΔCO and ΔBio, similar to an approach used by Setyan

  20. Influence of persistent exchangeable oxygen on biogenic silica δ18O in deep sea cores

    Science.gov (United States)

    Menicucci, A. J.; Spero, H. J.

    2016-12-01

    The removal of exchangeable oxygen from biogenic opal prior to IRMS analysis is critical during sample preparation. Exchangeable oxygen is found in the form of hydroxyl and between defects within the amorphous silicate lattice structure. Typical analytical procedures utilize a variety of dehydroxylation methods to eliminate this exchangeable oxygen, including vacuum dehydroxylation and prefluorination. Such methods are generally considered sufficient for elimination of non-lattice bound oxygen that would obfuscate environmental oxygen isotopic signals contained within the silicate tetrahedra. δ18O data that are then empirically calibrated against modern hydrographic data, and applied down core in paleoceanographic applications. We have conducted a suite of experiments on purified marine opal samples using the new microfluorination method (Menicucci et al., 2013). Our data demonstrate that the amount of exchangeable oxygen in biogenic opal decreases as sample age/depth in core increases. These changes are not accounted for by current researchers. Further, our experimental data indicate that vacuum dehydroxylation does not eliminate all exchangeable oxygen, even after hydroxyl is undetectable. We have conducted experiments to quantify the amount of time necessary to ensure vacuum dehydroxylation has eliminated exchangeable oxygen so that opal samples are stable prior to δ18Odiatom analysis. Our experiments suggest that previously generated opal δ18O data may contain a variable down-core offset due to the presence of exchangeable, non-lattice bound oxygen sources. Our experiments indicate that diatom silica requires dehydroxylation for ≥ 44 hours at 1060oC to quantitatively remove all non-lattice bound oxygen. Further, this variable amount of exchangeable oxygen may be responsible for some of the disagreement between existing empirical calibrations based on core-top diatom frustule remains. Analysis of δ18Odiatom values after this long vacuum dehydroxylation

  1. Influence of temperature on the molecular composition of ions and charged clusters during pure biogenic nucleation

    Science.gov (United States)

    Frege, Carla; Ortega, Ismael K.; Rissanen, Matti P.; Praplan, Arnaud P.; Steiner, Gerhard; Heinritzi, Martin; Ahonen, Lauri; Amorim, António; Bernhammer, Anne-Kathrin; Bianchi, Federico; Brilke, Sophia; Breitenlechner, Martin; Dada, Lubna; Dias, António; Duplissy, Jonathan; Ehrhart, Sebastian; El-Haddad, Imad; Fischer, Lukas; Fuchs, Claudia; Garmash, Olga; Gonin, Marc; Hansel, Armin; Hoyle, Christopher R.; Jokinen, Tuija; Junninen, Heikki; Kirkby, Jasper; Kürten, Andreas; Lehtipalo, Katrianne; Leiminger, Markus; Mauldin, Roy Lee; Molteni, Ugo; Nichman, Leonid; Petäjä, Tuukka; Sarnela, Nina; Schobesberger, Siegfried; Simon, Mario; Sipilä, Mikko; Stolzenburg, Dominik; Tomé, António; Vogel, Alexander L.; Wagner, Andrea C.; Wagner, Robert; Xiao, Mao; Yan, Chao; Ye, Penglin; Curtius, Joachim; Donahue, Neil M.; Flagan, Richard C.; Kulmala, Markku; Worsnop, Douglas R.; Winkler, Paul M.; Dommen, Josef; Baltensperger, Urs

    2018-01-01

    It was recently shown by the CERN CLOUD experiment that biogenic highly oxygenated molecules (HOMs) form particles under atmospheric conditions in the absence of sulfuric acid, where ions enhance the nucleation rate by 1-2 orders of magnitude. The biogenic HOMs were produced from ozonolysis of α-pinene at 5 °C. Here we extend this study to compare the molecular composition of positive and negative HOM clusters measured with atmospheric pressure interface time-of-flight mass spectrometers (APi-TOFs), at three different temperatures (25, 5 and -25 °C). Most negative HOM clusters include a nitrate (NO3-) ion, and the spectra are similar to those seen in the nighttime boreal forest. On the other hand, most positive HOM clusters include an ammonium (NH4+) ion, and the spectra are characterized by mass bands that differ in their molecular weight by ˜ 20 C atoms, corresponding to HOM dimers. At lower temperatures the average oxygen to carbon (O : C) ratio of the HOM clusters decreases for both polarities, reflecting an overall reduction of HOM formation with decreasing temperature. This indicates a decrease in the rate of autoxidation with temperature due to a rather high activation energy as has previously been determined by quantum chemical calculations. Furthermore, at the lowest temperature (-25 °C), the presence of C30 clusters shows that HOM monomers start to contribute to the nucleation of positive clusters. These experimental findings are supported by quantum chemical calculations of the binding energies of representative neutral and charged clusters.

  2. Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea

    Science.gov (United States)

    Krause, J. W.; Brzezinski, M. A.; Baines, S. B.; Collier, J.; Ohnemus, D.; Twining, B. S.

    2016-02-01

    The picoplankton size class (total biogenic silica (>0.4 µm) standing stock and to its rate of production in the Sargasso Sea. These trends were robust after correcting biogenic silica, and the calculated rates which use these data, for interference by lithogenic silica. The 100-m total integrated biogenic silica concentration was low and ranged from 0.7 - 5.0 mmol Si m-2, with the highest value within a mesoscale eddy. Material within the picoplankton size fraction was present at every low-biomass station and provided a relatively consistent contribution to total biogenic silica (10 - 24%, average 14%). The integrated rates of total biogenic silica production were reflective of the low biomass: 0.2 - 1.8 mmol Si m-2 d-1 in non-eddy stations and 6.0 mmol Si m-2 d-1 within the eddy. The average proportion of biogenic silica production in the picoplankton was 16% (range 3 - 38%), with a lower value within the eddy. Outside the eddy, the biomass-normalized rates of silica production were similar for each size class, 0.6 d-1. Using Synechococcus abundance data in the upper 30 m and assuming this group was the only contributor to the picoplankton biogenic silica, we calculate an average Si quota of 229 amol Si cell-1; this is two-fold higher than reported previously by direct measurement on cells using x-ray fluorescence. In the eddy, the estimated Synechococcus Si-quotas were up to 50-fold higher than estimated at other stations, suggesting that most of the pico-sized biogenic silica in this feature may have been diatom fragments. This interpretation is also supported by the eddy having the lowest biomass-normalized production rates for the picoplankton. Our results suggest picoplankton may have a small, but relatively stable, contribution to biogenic silica in this region, which underlies a more dynamic microplankton biogenic silica pool driven by diatoms.

  3. Carbonaceous aerosol characterization in the Amazon basin, Brazil: novel dicarboxylic acids and related compounds

    Science.gov (United States)

    Kubátová, Alena; Vermeylen, Reinhilde; Claeys, Magda; Cafmeyer, Jan; Maenhaut, Willy; Roberts, Greg; Artaxo, Paulo

    High-resolution capillary gas chromatography (GC) and GC/mass spectrometry (MS) were employed for the quantitative determination of dichloromethane-extractable organic compounds in total and size-fractionated aerosol samples which were collected in the Amazon basin, Brazil, during the wet season, as part of the LBA-CLAIRE-98 experiment. Special emphasis was placed on the characterization and identification of several novel unknown dicarboxylic acids and related oxidative degradation products. This class of acidic products was enriched in the fine size fraction, suggesting that they were secondary organic aerosol products formed by gas-to-particle conversion. Some of the unknowns contributed more to the class of dicarboxylic acids than the major known compound, nonadioic acid (azelaic acid). The same unknowns were also observed in urban aerosol samples collected on hot summer days in Gent, Belgium. For the characterization and structure elucidation of the unknowns, various types of derivatizations and fractionation by solid-phase extraction were employed in combination with GC/MS. Four unknowns were identified. The most abundant were two derivatives of glutaric acid, 3-isopropyl pentanedioic acid and 3-acetyl pentanedioic acid. The other two identified unknowns were another oxo homologue, 3-acetyl hexanedioic acid, and, interestingly, 3-carboxy heptanedioic acid. To our knowledge, the occurrence of these four compounds in atmospheric aerosols has not yet been reported. The biogenic precursors of the novel identified compounds could not be pinpointed, but most likely include monoterpenes and fatty acids.

  4. Contributions of mobile, stationary and biogenic sources to air pollution in the Amazon rainforest: a numerical study with the WRF-Chem model

    Science.gov (United States)

    Abou Rafee, Sameh A.; Martins, Leila D.; Kawashima, Ana B.; Almeida, Daniela S.; Morais, Marcos V. B.; Souza, Rita V. A.; Oliveira, Maria B. L.; Souza, Rodrigo A. F.; Medeiros, Adan S. S.; Urbina, Viviana; Freitas, Edmilson D.; Martin, Scot T.; Martins, Jorge A.

    2017-06-01

    This paper evaluates the contributions of the emissions from mobile, stationary and biogenic sources on air pollution in the Amazon rainforest by using the Weather Research and Forecasting with Chemistry (WRF-Chem) model. The analyzed air pollutants were CO, NOx, SO2, O3, PM2. 5, PM10 and volatile organic compounds (VOCs). Five scenarios were defined in order to evaluate the emissions by biogenic, mobile and stationary sources, as well as a future scenario to assess the potential air quality impact of doubled anthropogenic emissions. The stationary sources explain the highest concentrations for all air pollutants evaluated, except for CO, for which the mobile sources are predominant. The anthropogenic sources considered resulted an increasing in the spatial peak-temporal average concentrations of pollutants in 3 to 2780 times in relation to those with only biogenic sources. The future scenario showed an increase in the range of 3 to 62 % in average concentrations and 45 to 109 % in peak concentrations depending on the pollutant. In addition, the spatial distributions of the scenarios has shown that the air pollution plume from the city of Manaus is predominantly transported west and southwest, and it can reach hundreds of kilometers in length.

  5. Contribution of biogenic and photochemical sources to ambient VOCs during winter to summer transition at a semi-arid urban site in India.

    Science.gov (United States)

    Sahu, L K; Tripathi, Nidhi; Yadav, Ravi

    2017-10-01

    This paper presents the sources and characteristics of ambient volatile organic compounds (VOCs) measured using PTR-TOF-MS instrument in a metropolitan city of India during winter to summer transition period. Mixing ratios of VOCs exhibited strong diurnal, day-to-day and episodic variations. Methanol was the most dominant species with monthly mean values of 18-22 pbbv. The emission ratios of VOCs relative to benzene calculated from nighttime data were used to estimate the relative contributions of vehicle exhaust and other sources. The increasing daytime ratios of oxygenated-VOCs (OVOCs)/benzene and isoprene/benzene from February to March indicates increasing contribution of photo-oxidation and biogenic sources. Daytime fractions of acetone (18%), acetaldehyde (15%) and isoprene (4.5%) to the sum of measured VOCs in March were higher than those in February. Variations of VOCs at lower temperatures (biogenic emissions. The emissions of OVOCs from vehicle exhaust were estimated to be smaller (20-40%) than those from other sources. The contributions of biogenic and secondary sources to OVOCs and isoprene increased by 10-15% from winter to summer. This study provides evidence that the winter-to-summer transition has an impact on sources and composition of VOCs in tropical urban areas. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Contributions of mobile, stationary and biogenic sources to air pollution in the Amazon rainforest: a numerical study with the WRF-Chem model

    Directory of Open Access Journals (Sweden)

    S. A. Abou Rafee

    2017-06-01

    Full Text Available This paper evaluates the contributions of the emissions from mobile, stationary and biogenic sources on air pollution in the Amazon rainforest by using the Weather Research and Forecasting with Chemistry (WRF-Chem model. The analyzed air pollutants were CO, NOx, SO2, O3, PM2. 5, PM10 and volatile organic compounds (VOCs. Five scenarios were defined in order to evaluate the emissions by biogenic, mobile and stationary sources, as well as a future scenario to assess the potential air quality impact of doubled anthropogenic emissions. The stationary sources explain the highest concentrations for all air pollutants evaluated, except for CO, for which the mobile sources are predominant. The anthropogenic sources considered resulted an increasing in the spatial peak-temporal average concentrations of pollutants in 3 to 2780 times in relation to those with only biogenic sources. The future scenario showed an increase in the range of 3 to 62 % in average concentrations and 45 to 109 % in peak concentrations depending on the pollutant. In addition, the spatial distributions of the scenarios has shown that the air pollution plume from the city of Manaus is predominantly transported west and southwest, and it can reach hundreds of kilometers in length.

  7. 76 FR 61100 - Notification of a Public Meeting of the Science Advisory Board Biogenic Carbon Emissions Panel

    Science.gov (United States)

    2011-10-03

    ... Advisory Board Biogenic Carbon Emissions Panel AGENCY: Environmental Protection Agency (EPA). ACTION... Office announces a public face-to-face meeting of the SAB Biogenic Carbon Emissions Panel to review EPA's draft Accounting Framework for Biogenic CO 2 Emissions from Stationary Sources (September 2011). DATES...

  8. Modelling Contribution of Biogenic VOCs to New Particle Formation in the Jülich Plant Atmosphere Chamber

    Science.gov (United States)

    Liao, L.; Boy, M.; Mogensen, D.; Mentel, T. F.; Kleist, E.; Kiendler-Scharr, A.; Tillman, R.; Kulmala, M. T.; Dal Maso, M.

    2012-12-01

    Biogenic VOCs are substantially emitted from vegetation to atmosphere. The oxidation of BVOCs by OH, O3, and NO3 in air generating less volatile compounds may lead to the formation and growth of secondary organic aerosol, and thus presents a link to the vegetation, aerosol, and climate interaction system (Kulmala et al, 2004). Studies including field observations, laboratory experiments and modelling have improved our understanding on the connection between BVOCs and new particle formation mechanism in some extent (see e.g. Tunved et al., 2006; Mentel et al., 2009). Nevertheless, the exact formation process still remains uncertain, especially from the perspective of BVOC contributions. The purpose of this work is using the MALTE aerosol dynamics and air chemistry box model to investigate aerosol formation from reactions of direct tree emitted VOCs in the presence of ozone, UV light and artificial solar light in an atmospheric simulation chamber. This model employs up to date air chemical reactions, especially the VOC chemistry, which may potentially allow us to estimate the contribution of BVOCs to secondary aerosol formation, and further to quantify the influence of terpenes to the formation rate of new particles. Experiments were conducted in the plant chamber facility at Forschungszentrum Jülich, Germany (Jülich Plant Aerosol Atmosphere Chamber, JPAC). The detail regarding to the chamber facility has been written elsewhere (Mentel et al., 2009). During the experiments, sulphuric acid was measured by CIMS. VOC mixing ratios were measured by two GC-MS systems and PTR-MS. An Airmodus Particle size magnifier coupled with a TSI CPC and a PH-CPC were used to count the total particle number concentrations with a detection limit close to the expected size of formation of fresh nanoCN. A SMPS measured the particle size distribution. Several other parameters including ozone, CO2, NO, Temperature, RH, and flow rates were also measured. MALTE is a modular model to predict

  9. Effects of combined growth of biogenic and xenobiotic substrates on degradation of xenobiotic by activated sludge

    Directory of Open Access Journals (Sweden)

    Thien Nguyen Phuc

    2017-01-01

    Full Text Available The purpose of this study was to research about supplementation of different concentrations of the substrate on the degradation rate of xenobiotic and to determine the optimal concentrations of the auxiliary substrates that are most beneficial of xenobiotic degradation rate. 2,4-dichlorophenol acid (2,4-D was used representative xenobiotic organic compounds, while peptone and sugar used for auxiliary substrates. The activated sludge was completely break down 100 mg/l of 2,4-D for three consecutive times. The different concentrations between biogenic substracts of sucrose and peptone were fed separately or combined into the medium containing 200 mg/l of 2,4-D and 140 mg SS/l of activated sludge. The results showed that sugar and peptone could affect 2,4-D degradation rate to several different degree at different concentrations. In separate supplementation, 2,4-D degradation completed within 25 hours, 40 mg/l sugar and 150 mg/l peptone concentrations were found to be the optimal concentrations. In combined case, 2,4-D was consumed totally within 20 hours and the optimal concentration of the combined sugar and peptone concentrations were 40 and 150 mg/l, respectively.

  10. Quantitative Identification of Biogenic Nonextractable Pesticide Residues in Soil by (14)C-Analysis.

    Science.gov (United States)

    Poßberg, Claudia; Schmidt, Burkhard; Nowak, Karolina; Telscher, Markus; Lagojda, Andreas; Schaeffer, Andreas

    2016-06-21

    Quantification of nonextractable residues (NER) of pesticides in soil is feasible by use of radioactively labeled compounds, but structural information on these long-term stabilized residues is usually lacking. Microorganisms incorporate parts of the radiolabeled ((14)C-) carbon from contaminants into microbial biomass, which after cell death enters soil organic matter, thus forming biogenic nonextractable residues (bioNER). The formation of bioNER is not yet determinable in environmental fate studies due to a lack of methodology. This paper focuses on the development of a feasible analytical method to quantify proteinaceous carbon, since proteins make up the largest mass portion of bacterial cells. The test substance (14)C-bromoxynil after 56 days forms more than 70% of NER in soil. For further characterization of NER the amino acids were extracted, purified, and separated by two-dimensional thin-layer chromatography (TLC). Visualization of the (14)C-amino acids was performed by bioimaging, unambiguous identification by GC-MS and LC-MS/MS. Our analysis revealed that after 56 days of incubation about 14.5% of the (14)C-label of bromoxynil was incorporated in amino acids. Extrapolating this content based on the amount of proteins in the biomass (55%), in total about 26% of the NER is accounted for by bioNER and thus is not environmentally relevant.

  11. Biofilm-forming capacity in biogenic amine-producing bacteria isolated from dairy products.

    Directory of Open Access Journals (Sweden)

    Maria eDiaz

    2016-05-01

    Full Text Available Biofilms on the surface of food industry equipment are reservoirs of potentially food-contaminating bacteria - both spoilage and pathogenic. However, the capacity of biogenic amine (BA-producers to form biofilms has remained largely unexamined. BAs are low molecular weight, biologically active compounds that in food can reach concentrations high enough to be a toxicological hazard. Fermented foods, especially some types of cheese, accumulate the highest BA concentrations of all. The present work examines the biofilm-forming capacity of 56 BA-producing strains belonging to three genera and 10 species (12 Enterococcus faecalis, 6 Enterococcus faecium, 6 Enterococcus durans, 1 Enterococcus hirae, 12 Lactococcus lactis, 7 Lactobacillus vaginalis, 2 Lactobacillus curvatus, 2 Lactobacillus brevis, 1 Lactobacillus reuteri and 7 Lactobacillus parabuchneri, all isolated from dairy products. Strains of all the tested species - except for L. vaginalis - were able to produce biofilms on polystyrene and adhered to stainless steel. However, the biomass produced in biofilms was strain-dependent. These results suggest that biofilms may provide a route via which fermented foods can become contaminated by BA-producing microorganisms.

  12. Excitation-emission spectra and fluorescence quantum yields for fresh and aged biogenic secondary organic aerosols

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Hyun Ji; Laskin, Alexander; Laskin, Julia; Nizkorodov, Sergey A.

    2013-05-10

    Certain biogenic secondary organic aerosols (SOA) become absorbent and fluorescent when exposed to reduced nitrogen compounds such as ammonia, amines and their salts. Fluorescent SOA may potentially be mistaken for biological particles by detection methods relying on fluorescence. This work quantifies the spectral distribution and effective quantum yields of fluorescence of SOA generated from two monoterpenes, limonene and a-pinene, and two different oxidants, ozone (O3) and hydroxyl radical (OH). The SOA was generated in a smog chamber, collected on substrates, and aged by exposure to ~100 ppb ammonia vapor in air saturated with water vapor. Absorption and excitation-emission matrix (EEM) spectra of aqueous extracts of aged and control SOA samples were measured, and the effective absorption coefficients and fluorescence quantum yields (~0.005 for 349 nm excitation) were determined from the data. The strongest fluorescence for the limonene-derived SOA was observed for excitation = 420+- 50 nm and emission = 475 +- 38 nm. The window of the strongest fluorescence shifted to excitation = 320 +- 25 nm and emission = 425 +- 38 nm for the a-pinene-derived SOA. Both regions overlap with the excitation-emission matrix (EEM) spectra of some of the fluorophores found in primary biological aerosols. Our study suggests that, despite the low quantum yield, the aged SOA particles should have sufficient fluorescence intensities to interfere with the fluorescence detection of common bioaerosols.

  13. Additive interaction of carbon dots extracted from soluble coffee and biogenic silver nanoparticles against bacteria

    Science.gov (United States)

    Andrade, Patricia F.; Nakazato, Gerson; Durán, Nelson

    2017-06-01

    It is known the presence of carbon dots (CDs) in carbohydrate based foods. CDs extracted from coffee grounds and instant coffee was also published. CDs from soluble coffee revealed an average size of 4.4 nm. CDs were well-dispersed in water, fluorescent and we have characterized by XPS, XRD analysis, fluorescence and by FTIR spectra. The MIC value by serial micro-dilution assays for CDs on S. aureus ATCC 25923 was 250 μg/mL and E. coli ATCC 25922 >1000 ug/mL. For silver nanoparticles biogenically synthesized was 6.7 μg/mL. Following the checkerboard assay with combining ½ MIC values of the MICs of 125 μg/mL of carbon dots and 3.4 μg/mL of silver nanoparticles, following the fractionated inhibitory concentration (FIC) index methodology, on S. aureus gave a fractionated inhibitory concentration (FIC) value of 1.0, meaning additive interaction. In general, the unfunctionalized CDs showed to be inefficient as antibacterial compounds, however the CDs extracted from Coffee powder and together silver nanoparticles appeared interesting as antibacterial association.

  14. Using biogenic sulfur gases as remotely detectable biosignatures on anoxic planets.

    Science.gov (United States)

    Domagal-Goldman, Shawn D; Meadows, Victoria S; Claire, Mark W; Kasting, James F

    2011-06-01

    We used one-dimensional photochemical and radiative transfer models to study the potential of organic sulfur compounds (CS(2), OCS, CH(3)SH, CH(3)SCH(3), and CH(3)S(2)CH(3)) to act as remotely detectable biosignatures in anoxic exoplanetary atmospheres. Concentrations of organic sulfur gases were predicted for various biogenic sulfur fluxes into anoxic atmospheres and were found to increase with decreasing UV fluxes. Dimethyl sulfide (CH(3)SCH(3), or DMS) and dimethyl disulfide (CH(3)S(2)CH(3), or DMDS) concentrations could increase to remotely detectable levels, but only in cases of extremely low UV fluxes, which may occur in the habitable zone of an inactive M dwarf. The most detectable feature of organic sulfur gases is an indirect one that results from an increase in ethane (C(2)H(6)) over that which would be predicted based on the planet's methane (CH(4)) concentration. Thus, a characterization mission could detect these organic sulfur gases-and therefore the life that produces them-if it could sufficiently quantify the ethane and methane in the exoplanet's atmosphere.

  15. Dry Deposition of Biogenic Terpenes via Cationic Oligomerization on Environmental Aqueous Surfaces.

    Science.gov (United States)

    Enami, Shinichi; Hoffmann, Michael R; Colussi, Agustín J

    2012-11-01

    Unraveling the complex interactions between the atmosphere and the biosphere is critical for predicting climate changes. Although it is well-recognized that the large amounts of biogenic volatile organic compounds (BVOCs) emitted by plants must play important roles in this regard, current atmospheric models fail to account for their fate due to missing chemical sinks. Here, we applied online electrospray mass spectrometry to monitor aqueous microjets exposed to gaseous monoterpenes (α-pinene, β-pinene, and d-limonene) and found that these BVOCs are readily protonated (to C10H17(+)) and undergo oligomerization (to C20H33(+) and C30H49(+)) upon colliding with the surface of pH < 4 microjets. By considering that the yields of all products show inflection points at pH ≈ 3.5 and display solvent kinetic hydrogen isotope effects larger than 2, we conclude that the oligomerization process is initiated by weakly hydrated hydronium ions, H3O(+), present at the gas-water interface. Present results provide a universal mechanism for the dry deposition of unsaturated BVOCs and may account for recent observations on the uptake of terpenes in forest canopies and over grassland.

  16. The effects of fire on biogenic emissions of methane and nitric oxide from wetlands

    Science.gov (United States)

    Levine, Joel S.; Cofer, Wesley R., III; Sebacher, Daniel I.; Rhinehart, Robert P.; Winstead, Edward L.; Sebacher, Shirley; Hinkle, C. Ross; Schmalzer, Paul A.; Koller, Albert M., Jr.

    1990-01-01

    Enhanced emissions of methane (CH4) and nitric oxide (NO) were measured following three controlled burns in a Florida wetlands in 1987 and 1988. Wetlands are the major global source of methane resulting from metabolic activity of methanogenic bacteria. Methanogens require carbon dioxide, acetate, or formate for their growth and the metabolic production of methane. All three water-soluble compounds are produced in large concentrations during biomass burning. Postfire methane emissions exceeded 0.15 g CH 4/sq m per day. Preburn and postburn measurements of soil nutrients indicate significant postburn increases in soil ammonium, from 8.35 to 13.49 parts per million (ppm) in the upper 5 cm of the Juncus marsh and from 8.83 to 23.75 ppm in the upper 5 cm of the Spartina marsh. Soil nitrate concentrations were found to decrease in both marshes after the fire. These measurements indicate that the combustion products of biomass burning exert an important 'fertilizing' effect on the biosphere and on the biogenic production of environmentally significant atmospheric gases.

  17. Additive interaction of carbon dots extracted from soluble coffee and biogenic silver nanoparticles against bacteria

    International Nuclear Information System (INIS)

    Andrade, Patricia F.; Durán, Nelson; Nakazato, Gerson

    2017-01-01

    It is known the presence of carbon dots (CDs) in carbohydrate based foods. CDs extracted from coffee grounds and instant coffee was also published. CDs from soluble coffee revealed an average size of 4.4 nm. CDs were well-dispersed in water, fluorescent and we have characterized by XPS, XRD analysis, fluorescence and by FTIR spectra. The MIC value by serial micro-dilution assays for CDs on S. aureus ATCC 25923 was 250 μg/mL and E. coli ATCC 25922 >1000 ug/mL. For silver nanoparticles biogenically synthesized was 6.7 μg/mL. Following the checkerboard assay with combining ½ MIC values of the MICs of 125 μg/mL of carbon dots and 3.4 μg/mL of silver nanoparticles, following the fractionated inhibitory concentration (FIC) index methodology, on S. aureus gave a fractionated inhibitory concentration (FIC) value of 1.0, meaning additive interaction. In general, the unfunctionalized CDs showed to be inefficient as antibacterial compounds, however the CDs extracted from Coffee powder and together silver nanoparticles appeared interesting as antibacterial association. (paper)

  18. Vortex-assisted surfactant-enhanced-emulsification liquid-liquid microextraction of biogenic amines in fermented foods before their simultaneous analysis by high-performance liquid chromatography.

    Science.gov (United States)

    Donthuan, Jaruwan; Yunchalard, Sirinda; Srijaranai, Supalax

    2014-11-01

    A simple, rapid, sensitive, and environmentally friendly method, based on modified dispersive liquid-liquid microextraction coupled with high-performance liquid chromatography was developed for the simultaneous determination of five biogenic amines in fermented food samples. Biogenic amines were derivatized with 9-fluorenylmethyl chloroformate, extracted by vortex-assisted surfactant-enhanced emulsification liquid-liquid microextraction, and then analyzed by high-performance liquid chromatography. Five biogenic amine compounds were separated within 30 min using a C18 column and gradient elution with acetonitrile and 1% acetic acid. Factors influencing the derivatization and extraction efficiency such as type and volume of extraction solvent, type, and concentration of surfactant, pH, salt addition, and vortex time were optimized. Under the optimum conditions, the method provided the enrichment factors in the range of 161-553. Good linearity was obtained from 0.002-0.5 mg/L for cadaverine and tyramine, 0.003-1 mg/L for tryptamine and histamine, and 0.005-1 mg/L for spermidine with coefficient of determination (R(2) ) > 0.992. The limits of detection ranged from 0.0010 to 0.0026 mg/L. The proposed method was successfully applied to analysis of biogenic amines in fermented foods such as fermented fish (plaa-som), wine and beer where good recoveries were obtained in the range of 83.2-112.5% © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. The impact of biogenic VOC emissions on photochemical ozone formation during a high ozone pollution episode in the Iberian Peninsula in the 2003 summer season

    Directory of Open Access Journals (Sweden)

    N. Castell

    2008-04-01

    Full Text Available Throughout Europe the summer of 2003 was exceptionally warm, especially July and August. The European Environment Agency (EEA reported several ozone episodes, mainly in the first half of August. These episodes were exceptionally long-lasting, spatially extensive, and associated to high temperatures. In this paper, the 10$ndash;15 August 2003 ozone pollution event has been analyzed using meteorological and regional air quality modelling. During this period the threshold values of the European Directive 2002/3/EC were exceeded in various areas of the Iberian Peninsula.

    The aim of this paper is to computationally understand and quantify the influence of biogenic volatile organic compound (BVOC emissions in the formation of tropospheric ozone during this high ozone episode. Being able to differentiate how much ozone comes from biogenic emissions alone and how much comes from the interaction between anthropogenic and biogenic emissions would be helpful to develop a feasible and effective ozone control strategy. The impact on ozone formation was also studied in combination with various anthropogenic emission reduction strategies, i.e., when anthropogenic VOC emissions and/or NOx emissions are reduced. The results show a great dependency of the BVOC contribution to ozone formation on the antropoghenic reduction scenario. In rural areas, the impact due to a NOx and/or VOC reduction does not change the BVOC impact. Nevertheless, within big cities or industrial zones, a NOx reduction results in a decrease of the biogenic impact in ozone levels that can reach 85 μg/m3, whereas an Anthropogenic Volatile Organic Compound (AVOC reduction results in a decrease of the BVOC contribution on ozone formation that varies from 0 to 30 μg/m3 with respect to the contribution at the same points in the 2003 base scenario. On the other hand, downwind of the big cities, a decrease in NOx produces

  20. Biogenic habitat transitions influence facilitation in a marine soft-sediment ecosystem.

    Science.gov (United States)

    Lohrer, Andrew M; Rodil, Iván F; Townsend, Michael; Chiaroni, Luca D; Hewitt, Judi E; Thrush, Simon F

    2013-01-01

    Habitats are often defined by the presence of key species and biogenic features. However, the ecological consequences of interactions among distinct habitat-forming species in transition zones where their habitats overlap remain poorly understood. We investigated transition zone interactions by conducting experiments at three locations in Mahurangi Harbour, New Zealand, where the abundance of two habitat-forming marine species naturally varied. The two key species differed in form and function: One was a sessile suspension-feeding bivalve that protruded from the sediment (Atrina zelandica; Pinnidae); the other was a mobile infaunal urchin that bioturbated sediment (Echinocardium cordatum; Spatangoida). The experimental treatments established at each site reflected the natural densities of the species across sites (Atrina only, Echinocardium only, Atrina and Echinocardium together, and plots with neither species present). We identified the individual and combined effects of the two key species on sediment characteristics and co-occurring macrofauna. After five months, we documented significant treatment effects, including the highest abundance of co-occurring macrofauna in the Atrina-only treatments. However, the facilitation of macrofauna by Atrina (relative to removal treatments) was entirely negated in the presence of Echinocardium at densities >10 individuals/m2. The transitional areas in Mahurangi Harbour composed of co-occurring Atrina and Echinocardium are currently widespread and are probably more common now than monospecific patches of either individual species, due to the thinning of dense Atrina patches into sparser mixed zones during the last 10-15 years. Thus, although some ecologists avoid ecotones and habitat edges when designing experiments, suspecting that it will skew the extrapolation of results, this study increased our understanding of benthic community dynamics across larger proportions of the seascape and provided insights into temporal

  1. Rate of production, dissolution and accumulation of biogenic solids in the ocean.

    Science.gov (United States)

    Arrhenius, G

    1988-01-01

    The equatorial current system, by its response to global circulation changes, provides a unique recording mechanism for long range climatic oscillations. A permanent record of the changes in rate of upwelling and organic production is generated in the equatorial deep sea sediments, particularly by such biogenic components which are unaffected by secondary dissolution. In order to determine the rates of accumulation of various sedimentary components, a reliable differential measurement of age of the strata must be obtained. Various approaches to this problem are reviewed, and sources of error discussed. Secondary dissolution of calcium carbonate introduces a substantial and variable difference between the dissolution-modified, and hence a priori unknown, rate of deposition on one hand and the rate of accumulation, derivable from the observed concentration, on the other. The cause and magnitude of these variations are of importance, particularly since some current dating schemes are based on assumed constancy in the rate of accumulation of this and, in some cases, also all other sedimentary components. The concepts used in rate evaluation are discussed with emphasis on the difference between the state of dissolution, an observable property of the sediment, and the rate of dissolution, a parameter that requires deduction of the carbonate fraction dissolved, and of the time differential. As a most likely cause of the enhanced state of dissolution of the interglacial carbonate sediments is proposed the lowered rates of biogenic production and deposition, which cause longer exposure of the carbonate microfossils to corrosion in the bioturbated surface layer of the sediment. Historical perspective is included in the discussion in view of the dedication of the Symposium to Hans Pettersson, the leader of the Swedish Deep Sea Expedition 1947-1948, an undertaking that opened a new era in deep sea research and planetary dynamics.

  2. Correlations between water-soluble organic aerosol and water vapor: a synergistic effect from biogenic emissions?

    Science.gov (United States)

    Hennigan, Christopher J; Bergin, Michael H; Weber, Rodney J

    2008-12-15

    Ground-based measurements of meteorological parameters and water-soluble organic carbon in the gas(WSOCg) and particle (WSOCp) phases were carried out in Atlanta, Georgia, from May to September 2007. Fourteen separate events were observed throughout the summer in which WSOCp and water vapor concentrations were highly correlated (average WSOCp-water vapor r = 0.92); however, for the entire summer, no well-defined relationship existed between the two. The correlation events, which lasted on average 19 h, were characterized by a wide range of WSOCp and water vapor concentrations. Several hypotheses for the correlation are explored, including heterogeneous liquid phase SOA formation and the co-emission of biogenic VOCs and water vapor. The data provide supporting evidence for contributions from both and suggest the possibility of a synergistic effect between the co-emission of water vapor and VOCs from biogenic sources on SOA formation. Median WSOCp concentrations were also correlated with elemental carbon (EC), although this correlation extended over the entire summer. Despite the emission of water vapor from anthropogenic mobile sources and the WSOCp-EC correlation, mobile sources were not considered a potential cause for the WSOCp-water vapor correlations because of their low contribution to the water vapor budget. Meteorology could perhaps have influenced the WSOCp-EC correlation, but other factors are implicated as well. Overall, the results suggest that the temperature-dependent co-emission of water vapor through evapotranspiration and SOA precursor-VOCs by vegetation may be an important process contributing to SOA in some environments.

  3. Emissions of biogenic VOC from forest ecosystems in central Europe: estimation and comparison with anthropogenic emission inventory.

    Science.gov (United States)

    Zemankova, Katerina; Brechler, Josef

    2010-02-01

    This paper describes a method of estimating emission fluxes of biogenic volatile organic compounds (BVOCs) based on the approach proposed by Guenther et al. (1995) and the high-resolution Corine land-cover 2000 database (1x1km resolution). The computed emission fluxes for the Czech Republic (selected for analysis as being representative of a heavily cultivated, central European country) are compared with anthropogenic emissions, both for the entire country and for individual administrative regions. In some regions, BVOC emissions are as high as anthropogenic emissions; however, in most regions the BVOC emissions are approximately 50% of the anthropogenic emissions. The yearly course of BVOC emissions (represented by monoterpenes and isoprene) is presented, along with the spatial distribution of annual mean values. Differences in emission distributions during winter (January) and summer (June) are also considered. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

  4. Stable isotopes labelled compounds

    International Nuclear Information System (INIS)

    1982-09-01

    The catalogue on stable isotopes labelled compounds offers deuterium, nitrogen-15, and multiply labelled compounds. It includes: (1) conditions of sale and delivery, (2) the application of stable isotopes, (3) technical information, (4) product specifications, and (5) the complete delivery programme

  5. Pharmacological potential of biogenic amine-polyamine interactions beyond neurotransmission.

    Science.gov (United States)

    Sánchez-Jiménez, F; Ruiz-Pérez, M V; Urdiales, J L; Medina, M A

    2013-09-01

    Histamine, serotonin and dopamine are biogenic amines involved in intercellular communication with multiple effects on human pathophysiology. They are products of two highly homologous enzymes, histidine decarboxylase and l-aromatic amino acid decarboxylase, and transmit their signals through different receptors and signal transduction mechanisms. Polyamines derived from ornithine (putrescine, spermidine and spermine) are mainly involved in intracellular effects related to cell proliferation and death mechanisms. This review summarizes structural and functional evidence for interactions between components of all these amine metabolic and signalling networks (decarboxylases, transporters, oxidases, receptors etc.) at cellular and tissue levels, distinct from nervous and neuroendocrine systems, where the crosstalk among these amine-related components can also have important pathophysiological consequences. The discussion highlights aspects that could help to predict and discuss the effects of intervention strategies. © 2013 The Authors. British Journal of Pharmacology © 2013 The British Pharmacological Society.

  6. Emissions of biogenic sulfur gases from northern bogs and fens

    Science.gov (United States)

    Demello, William Zamboni; Hines, Mark E.; Bayley, Suzanne E.

    1992-01-01

    Sulfur gases are important components of the global cycle of S. They contribute to the acidity of precipitation and they influence global radiation balance and climate. The role of terrestrial sources of biogenic S and their effect on atmospheric chemistry remain as major unanswered questions in our understanding of the natural S cycle. The role of northern wetlands as sources and sinks of gaseous S by measuring rates of S gas exchange as a function of season, hydrologic conditions, and gradients in tropic status was investigated. Experiments were conducted in wetlands in New Hampshire, particularly a poor fen, and in Mire 239, a poor fen at the Experimental Lakes Area (ELA) in Ontario. Emissions were determined using Teflon enclosures, gas cryotrapping methods and gas chromatography (GC) with flame photometric detection. Dynamic (sweep flow) and static enclosures were employed which yielded similar results. Dissolved S gases and methane were determined by gas stripping followed by GC.

  7. Sustainable use of biogenic fuels resources through industrial synergies

    International Nuclear Information System (INIS)

    Schuech, Andrea; Nelles, Michael; Nassour, Abdallah

    2017-01-01

    The term industrial symbiosis is used when traditionally separate companies and industries work together in a collective approach to physically exchange materials, energy, water and by-products with a mutual competitive advantage. Aim of the European project ''UBIS - Urban Baltic Industrial Symbiosis'' (INTERREG South-Baltic Programme) is to use biogenic resources as well as waste and residues sustainable in industrial symbiosis and to reduce emissions at the same time. Even if a lot has already been achieved in this area, there are still many unused material flows and there are possibilities to use them even more efficiently. In the project existing collaborations will be investigated as well as new ones identified and evaluated. This article introduces the UBIS project and provides an insight into the subject of industrial symbiosis as well examples described.

  8. Ion-induced nucleation of pure biogenic particles

    CERN Document Server

    Kirkby, Jasper; Sengupta, Kamalika; Frege, Carla; Gordon, Hamish; Williamson, Christina; Heinritzi, Martin; Simon, Mario; Yan, Chao; Almeida, João; Tröstl, Jasmin; Nieminen, Tuomo; Ortega, Ismael K; Wagner, Robert; Adamov, Alexey; Amorim, Antonio; Bernhammer, Anne-Kathrin; Bianchi, Federico; Breitenlechner, Martin; Brilke, Sophia; Chen, Xuemeng; Craven, Jill; Dias, antonio; Ehrhart, Sebastian; Flagan, Richard C; Franchin, Alessandro; Fuchs, Claudia; Guida, Roberto; Hakala, Jani; Hoyle, Christopher R; Jokinen, Tuija; Junninen, Heikki; Kangasluoma, Juha; Kim, Jaeseok; Krapf, Manuel; Kürten, andreas; Laaksonen, Ari; Lehtipalo, Katrianne; Makhmutov, Vladimir; Mathot, Serge; Molteni, Ugo; Onnela, antti; Peräkylä, Otso; Piel, Felix; Petäjä, Tuukka; Praplan, Arnaud P; Pringle, Kirsty; Rap, Alexandru; Richards, Nigel A D; Riipinen, Ilona; Rissanen, Matti P; Rondo, Linda; Sarnela, Nina; Schobesberger, Siegfried; Scott, Catherine E; Seinfeld, John H; Sipilä, Mikko; Steiner, Gerhard; Stozhkov, Yuri; Stratmann, Frank; Tomé, Antonio; Virtanen, Annele; Vogel, Alexander L; Wagner, Andrea C; Wagner, Paul E; Weingartner, Ernest; Wimmer, Daniela; Winkler, Paul M; Ye, Penglin; Zhang, Xuan; Hansel, Armin; Dommen, Josef; Donahue, Neil M; Worsnop, Douglas R; Baltensperger, Urs; Kulmala, Markku; Carslaw, Kenneth S; Curtius, Joachim

    2016-01-01

    Atmospheric aerosols and their effect on clouds are thought to be important for anthropogenic radiative forcing of the climate, yet remain poorly understood. Globally, around half of cloud condensation nuclei originate from nucleation of atmospheric vapours. It is thought that sulfuric acid is essential to initiate most particle formation in the atmosphere and that ions have a relatively minor role. Some laboratory studies, however, have reported organic particle formation without the intentional addition of sulfuric acid, although contamination could not be excluded. Here we present evidence for the formation of aerosol particles from highly oxidized biogenic vapours in the absence of sulfuric acid in a large chamber under atmospheric conditions. The highly oxygenated molecules (HOMs) are produced by ozonolysis of $\\alpha$-pinene. We find that ions from Galactic cosmic rays increase the nucleation rate by one to two orders of magnitude compared with neutral nucleation. Our experimental findings are supported...

  9. Humidity-dependent phase state of SOA particles from biogenic and anthropogenic precursors

    Directory of Open Access Journals (Sweden)

    E. Saukko

    2012-08-01

    Full Text Available The physical phase state (solid, semi-solid, or liquid of secondary organic aerosol (SOA particles has important implications for a number of atmospheric processes. We report the phase state of SOA particles spanning a wide range of oxygen to carbon ratios (O / C, used here as a surrogate for SOA oxidation level, produced in a flow tube reactor by photo-oxidation of various atmospherically relevant surrogate anthropogenic and biogenic volatile organic compounds (VOCs. The phase state of laboratory-generated SOA was determined by the particle bounce behavior after inertial impaction on a polished steel substrate. The measured bounce fraction was evaluated as a function of relative humidity and SOA oxidation level (O / C measured by an Aerodyne high resolution time of flight aerosol mass spectrometer (HR-ToF AMS.

    The main findings of the study are: (1 biogenic and anthropogenic SOA particles are found to be amorphous solid or semi-solid based on the measured bounced fraction (BF, which was typically higher than 0.6 on a 0 to 1 scale. A decrease in the BF is observed for most systems after the SOA is exposed to relative humidity of at least 80% RH, corresponding to a RH at impaction of 55%. (2 Long-chain alkanes have a low BF (indicating a "liquid-like", less viscous phase particles at low oxidation levels (BF < 0.2 ± 0.05 for O / C = 0.1. However, BF increases substantially upon increasing oxidation. (3 Increasing the concentration of sulphuric acid (H2SO4 in solid SOA particles (here tested for longifolene SOA causes a decrease in BF levels. (4 In the majority of cases the bounce behavior of the various SOA systems did not show correlation with the particle O / C. Rather, the molar mass of the gas-phase VOC precursor showed a positive correlation with the resistance to the RH-induced phase change of the formed SOA particles.

  10. Determination of consumption biogenic solid fuels in the commercial sector, trade, services (tertiary sector). Final report

    International Nuclear Information System (INIS)

    Viehmann, Cornelia; Westerkamp, Tanja; Schwenker, Andre; Schenker, Marian; Thraen, Daniela; Lenz, Volker; Ebert, Marcel

    2012-01-01

    . While in the energy balance of fossil fuels for the tertiary sector is determined by residual definition, this is not possible with biogenic solid fuels, since the sum of the total energy-recycled wood (and straw) is not known. Reasons for this are that only a fraction of the fuel are sold through the official fuel trade, while at the same time a considerable variety of usable biogenic solid fuels and their sources of supply are available. For this reason, in this project, the bottom-up approach, that is the consideration of the individual selected sectors of the tertiary sector, is used for the extrapolation. The tertiary sector comprises a wide variety of different industries, but not all are suitable for using solid fuels. Therefore, first, the identification of relevant sectors for this project is necessary. In addition to the group of relevant and irrelevant industries, potentially relevant industries are reported, which despite of currently low use of solid fuels can gain important in the future. The input data of classified relevant sectors are collected in a literature review and through interviews. These are processed accordingly and entered into the part of the project to be developed extrapolation method. For a holistic view of the tertiary sector, the extrapolation method is able to include data of potentially relevant or not relevant industries. In conclusion, in this study, the extrapolation results are presented and discussed. [de

  11. Characterizing the Amount and Chemistry of Biogenic SOA Formation from Pine Forest Air Using a Flow Reactor

    Science.gov (United States)

    Palm, B. B.; Ortega, A. M.; Campuzano Jost, P.; Day, D. A.; Fry, J.; Zarzana, K. J.; Draper, D. C.; Brown, S. S.; Kaser, L.; Karl, T.; Jud, W.; Hansel, A.; Hodzic, A.; Dube, W. P.; Wagner, N. L.; Brune, W. H.; Jimenez, J. L.

    2013-12-01

    The amount and chemistry of biogenic secondary organic aerosol (SOA) formation was characterized as a function of oxidant exposure using a Potential Aerosol Mass (PAM) oxidative flow reactor, sampling air in a terpene- and MBO-dominated pine forest during the 2011 BEACHON-RoMBAS field campaign at the U.S. Forest Service Manitou Forest Experimental Observatory in the Colorado Rocky Mountains. In the reactor, a chosen oxidant (OH, O3, or NO3) was generated and stepped over a range of values up to 10,000 times ambient levels, accelerating the gas-phase and heterogeneous oxidative aging of volatile organic compounds (VOCs), inorganic gases, and preexisting aerosol. The resulting SOA formation was measured using an Aerodyne HR-ToF-AMS, a TSI SMPS and a PTR-TOF-MS. Oxidative processing in the flow reactor was equivalent to a few hours up to ~20 days of atmospheric aging during the ~4-min reactor residence time. During BEACHON-RoMBAS, OH oxidation led to a net production of up to several μg/m3 of SOA at intermediate exposures (1-10 equivalent days) but resulted in net loss of OA mass (up to ~30%) at higher OH exposures (10-20 equivalent days), demonstrating the competing effects of functionalization/condensation vs. fragmentation/evaporation reactions as OH exposure increased. O3 and NO3 oxidation led to smaller (up to 0.5 μg/m3) SOA production, and loss of SOA mass due to fragmentation reactions was not observed. OH oxidation resulted in f44 vs. f43 and Van Krevelen diagram (H:C vs. O:C) slopes similar to ambient oxidation, suggesting the flow reactor oxidation pathways are similar to those in ambient air. Organic nitrate SOA production was observed from NO3 radical oxidation only. New particle formation was observed from OH oxidation, but not O3 or NO3 oxidation under our experimental conditions. An enhancement of SOA production under the influence of anthropogenic pollution (Denver) was also observed. High-resolution AMS measurements showed that the O:C and H

  12. Synergistic impacts of anthropogenic and biogenic emissions on summer surface O3 in East Asia.

    Science.gov (United States)

    Qu, Yu; An, Junling; Li, Jian

    2013-03-01

    A factor separation technique and an improved regional air quality model (RAQM) were applied to calculate synergistic contributions of anthropogenic volatile organic compounds (AVOCs), biogenic volatile organic compounds (BVOCs) and nitrogen oxides (NOx) to daily maximum surface 03 (O3DM) concentrations in East Asia in summer (June to August 2000). The summer averaged synergistic impacts of AVOCs and NOx are dominant in most areas of North China, with a maximum of 60 ppbv, while those of BVOCs and NOx are notable only in some limited areas with high BVOC emissions in South China, with a maximum of 25 ppbv. This result implies that BVOCs contribute much less to summer averaged O3DM concentrations than AVOCs in most areas of East Asia at a coarse spatial resolution (1 degree x 1 degree) although global emissions of BVOCs are much greater than those of AVOCs. Daily maximum total contributions of BVOCs can approach 20 ppbv in North China, but they can reach 40 ppbv in South China, approaching or exceeding those in some developed countries in Europe and North America. BVOC emissions in such special areas should be considered when 03 control measures are taken. Synergistic contributions among AVOCs, BVOCs and NOx significantly enhance O3 concentrations in the Beijing-Tianjin-Tangshan region and decrease them in some areas in South China. Thus, the total contributions of BVOCs to O3DM vary significantly from day to day and from location to location. This result suggests that 03 control measures obtained from episodic studies could be limited for long-term applications.

  13. Sustainable use of biogenic fuels resources through industrial synergies; Nachhaltige energetische Nutzung biogener Ressourcen durch industrielle Synergien

    Energy Technology Data Exchange (ETDEWEB)

    Schuech, Andrea [Rostock Univ. (Germany). Professur Abfall- und Stoffstromwirtschaft; Nelles, Michael [Rostock Univ. (Germany). Agrar- und Umweltwissenschaftliche Fakultaet; Nassour, Abdallah

    2017-08-01

    The term industrial symbiosis is used when traditionally separate companies and industries work together in a collective approach to physically exchange materials, energy, water and by-products with a mutual competitive advantage. Aim of the European project ''UBIS - Urban Baltic Industrial Symbiosis'' (INTERREG South-Baltic Programme) is to use biogenic resources as well as waste and residues sustainable in industrial symbiosis and to reduce emissions at the same time. Even if a lot has already been achieved in this area, there are still many unused material flows and there are possibilities to use them even more efficiently. In the project existing collaborations will be investigated as well as new ones identified and evaluated. This article introduces the UBIS project and provides an insight into the subject of industrial symbiosis as well examples described.

  14. Development and application of an analytical method for the determination of total atmospheric biogenic non-methane organic carbon

    Science.gov (United States)

    Regnery, J.; Dindorf, T.; Hacker, L.; Andres, S.; Kleist, E.; Wildt, J.; Kesselmeier, J.

    2012-04-01

    Most of the organic carbon which is present in the atmosphere is found as volatile organic compounds (VOCs) dominantly emitted by the biosphere. This biogenic emission has a major impact on the chemical and physical properties of the atmosphere by contributing to the formation of tropospheric ozone and secondary organic aerosol (SOA). One major limitation in advancing the understanding of this ozone and aerosol generation is the technical ability to accurately measure the sum of these volatile organics. Frequently used methods focus on the detection of a defined set of non-methane organic compounds (NMOC). However, adding these single compound concentrations might only represent a lower limit of atmospheric carbon concentrations, since no available method is able to analyze all organic compounds present in the atmosphere. A few studies are known that report on total NMOC concentration measurements in ambient air but measurements of the total NMOC exchange between vegetation and the atmosphere are missing. Therefore, we investigated the analysis of the total NMOC concentration by collecting these compounds on a solid adsorbent material for subsequent total carbon analysis. This first step is necessary to separate the stable gases CO, CO2 and CH4 from the volatile NMOC fraction. NMOC was desorbed and converted to CO2 by passing an oxidation unit. The CO2 is collected on a second preconcentration unit followed by thermal desorption and detection by an infrared gas analyzer. As major difficulties we identified the separation of CO2 from the NMOC compounds on the solid adsorbent unit and the choice of the catalytic material. The measurements were accompanied by GC analysis of single calibrated VOC species from permeation devices and measurements by a PTR-MS. Plant chamber measurements with Quercus ilex showed an expected diurnal course which was confirmed by the NMOC analyzer though with a discrepancy during the day of up to 40 %.

  15. Application and further development of an analytical method for the determination of biogenic total-non methane organic carbon

    Science.gov (United States)

    Regnery, Julia; Dindorf, Tamara; Kesselmeier, Juergen

    2010-05-01

    Most of the organic carbon which is present in the atmosphere is found as volatile organic compounds (VOCs). A known dominant source for these volatile organic compounds is the biosphere. Approximately 1.1 Gt of carbon is emitted from biogenic sources every year on a global scale. In comparison only app. 0.15 Gt are emitted from anthropogenic sources. The emission of VOCs has a high influence on the chemical and physical properties of the atmosphere as they contribute to the formation of tropospheric ozone and secondary organic aerosols (SOA). One major limitation in advancing the understanding of this ozone and aerosol generation is the technical ability to accurately measure these volatile organics. Previous studies focused on the detection of a defined set of NMOC (non-methane organic carbon) compounds. However, the integration of these single compound measurements to the sum of organic carbon might only represent a lower limit of atmospheric carbon concentrations, since none of these methods is able to analyze all organic compounds present in the atmosphere as a whole. A few studies are known that report on total NMOC concentration measurements in ambient air but measurements of the total NMOC exchange between vegetation and the atmosphere are missing. The analysis of the total NMOC concentrations is realized by collecting these compounds on a solid adsorbent material. Due to the special characteristics of the utilized adsorbents a separation of the stable gases CO, CO2 and CH4 from the volatile NMOC fraction is achieved. By subsequent heating of the NMOC adsorbent trap the volatiles are desorbed and converted to CO2 in an oxidation unit. The CO2 is collected on a second preconcentration unit followed by thermal desorption and is detected by an infrared gas analyzer. The system was tested with a set of single calibrated VOC species from permeation devices and compared with a data set obtained under field conditions.

  16. Bioactive amines and phenolic compounds in cocoa beans are affected by fermentation.

    Science.gov (United States)

    do Carmo Brito, Brenda de Nazaré; Campos Chisté, Renan; da Silva Pena, Rosinelson; Abreu Gloria, Maria Beatriz; Santos Lopes, Alessandra

    2017-08-01

    Cocoa is the target of increased scientific research as it is one of the richest source of bioactive compounds. The formation of bioactive amines and their changes in cocoa beans during seven days of traditional fermentation was investigated for the first time. In addition, total phenolic compounds, anthocyanins contents and the scavenging capacity against ABTS radical were determined to monitor the fermentation process. Only two biogenic amines (tryptamine and tyramine) and two polyamines (spermidine and spermine) were detected in cocoa beans during fermentation. Fermentation was characterized by three stages: i) high levels of tryptamine, phenolics, and scavenging capacity; ii) high contents of spermine, total biogenic amines and total polyamines; and iii) the highest spermidine levels and total acidity, but the lowest total phenolic compounds and anthocyanins contents. The scavenging capacity of cocoa beans during fermentation correlated with total phenolic compounds and anthocyanins contents. Copyright © 2017 Elsevier Ltd. All rights reserved.

  17. Trans- and cis-urocanic acid, biogenic amine and amino acid contents in ikan pekasam (fermented fish) produced from Javanese carp (Puntius gonionotus) and black tilapia (Oreochromis mossambicus).

    Science.gov (United States)

    Ezzat, M A; Zare, D; Karim, R; Ghazali, H M

    2015-04-01

    Ikan pekasam is a fermented fish product produced in Malaysia and is usually made from freshwater fish with ground roasted uncooked rice as the main source of carbohydrate. In this study, the amino acid, biogenic amine, and trans- and cis-urocanic acid (UCA) contents of fifteen commercial samples of Ikan pekasam made from Javanese carp and black tilapia, that had undergone either natural or acid-assisted fermentation, were quantified. The latter includes either tamarind (Tamarindus indica) pulp or dried slices of Garcinia atroviridis fruit in the fermentation process. Results showed that there are no significant differences in most of the biogenic amines including histamine, while there are significant differences in total UCA content, and trans- and cis-UCA contents between the two samples. Differences in the amino acid contents were largely fish-dependent. Copyright © 2014 Elsevier Ltd. All rights reserved.

  18. Pentane and other volatile organic compounds, including carboxylic\

    Czech Academy of Sciences Publication Activity Database

    Dryahina, Kseniya; Smith, D.; Bortlík, M.; Machková, N.; Lukáš, M.; Španěl, Patrik

    2018-01-01

    Roč. 12, č. 1 (2018), č. článku 016002. ISSN 1752-7155 Institutional support: RVO:61388955 Keywords : SIFT-MS * inflammatory bowel disease * Crohn´s disease Subject RIV: CB - Analytical Chemistry, Separation OBOR OECD: Analytical chemistry Impact factor: 4.318, year: 2016

  19. Selective silicification of Thalassinoides and other biogenic structures in marine platform limestones and hardground (Lower Albian, Sonabia, Cantabria

    Directory of Open Access Journals (Sweden)

    M. A. Bustillo

    2017-06-01

    Full Text Available In this work different types of chert from the Oriñón Limestone Formation (upper Aptian-lower Albian are studied. This formation outcrops in the eastern coast of Cantabria (Liendo-Castro Urdiales area and includes outstanding and abundant cherty nodules, lenticular layers and crusts. The host rock is mainly a biocalcarenite (wackestone/packstone of pellets, echinoids fragments, oysters, foraminifers and calcareous or calcified siliceous sponge spicules. The Oriñón Limestone Formation was deposited in a marine open-shelf environment and preserves a hardground of regional extent with particular chert crusts. The silica source is associated to the dissolution of siliceous sponge spicules or to their calcification. Most of the chert is constituted by mosaics of micro-cryptocrystalline quartz and calcedonite, and it is generated by the selective silicification of biogenic structures, mainly dwelling trace fossils (Thalassinoides isp. because of the higher amount of organic matter and the higher porosity and permeability of the burrow infill. In the hardground, selective silicification affects body fossils such as belemnites, oysters and echinoids, and trace fossils (feeding burrows and borings where in addition cherts is accumulated as an indeterminate crust. The silicification of the biogenic structures firstly occurred in form of opaline phases during the early diagenesis while the oxidation of the organic matter was active. Thus, Thalassinoides trace fossils affected by silicification preserve filaments and cocoids that might have had a microbial origin. Neoformation of dolomite and calcite occur only within the Thalassinoides trace fossils which indicates that diagenetic processes taking place within these burrows differed from those affecting the host rock and other biogenic structures. Dwelling trace fossils would have supposed a close micro-environment where the oxidation conditions changed from high to low rate.

  20. Dimers and organosulfates derived from biogenic oxidation products in aerosols during the Biosphere Effects on Aerosols and Photochemistry Experiment (BEARPEX) in California 2007 and 2009 (Invited)

    Science.gov (United States)

    Glasius, M.; Worton, D. R.; Kristensen, K.; Nguyen, Q.; Surratt, J.; Enggrob, K. L.; Bouvier-Brown, N. C.; Farmer, D.; Docherty, K. S.; Platt, S.; Bilde, M.; Nøjgaard, J. K.; Seinfeld, J.; Jimenez, J. L.; Goldstein, A.

    2010-12-01

    Oxidation products of biogenic volatile organic compounds, such as monoterpenes and isoprene, contribute to biogenic secondary organic aerosol (BSOA). The organosulfate derivatives of these compounds are formed through heterogeneous reactions involving sulphur compounds, with a considerable contribution from anthropogenic sources. Organosulfate derivatives of biogenic oxidation products thus belong to a new group of anthropogenic enhanced biogenic SOA (ABSOA). The Biosphere Effects on Aerosols and Photochemistry Experiment (BEARPEX) during summers of 2007 and 2009 provided an excellent platform at Blodgett Forest, California (a ponderosa pine plantation) for studying ABSOA. Typically, polluted air masses were transported upslope from the California Central Valley during day, while night conditions were influenced by downslope transport of air masses, low local atmospheric mixing and formation of a shallow boundary layer. We collected particle samples (PM2.5) as one nighttime and two daytime samples per day. After extraction of filters in polar organic solvents (i.e. acetonitrile or methanol), organic aerosol constituents were analyzed by HPLC coupled through an electrospray inlet to a quadrupole time-of-flight mass spectrometer (qTOF-MS). Organosulfates and nitrooxy organosulfates derived from oxidation products of α-pinene, β-pinene, limonene and isoprene were identified based on their molecular mass and MS fragmentation patterns. Measurements by High Resolution Time of Flight Aerosol Mass Spectrometry (HR-ToF-AMS) show high mass loadings of nitrate in the night and morning samples with highest levels of the nitrooxy organosulfates with MW 295 and MW 297. This may indicate that elevated levels of nitrate and nitrooxy organosulfates are formed in the same polluted air mass, probably through nitrate radical reactions. Terpenylic acid, diterpenylic acid acetate, and methylbutane tricarboxylic acid were found at concentrations comparable to pinic acid. A dimer of

  1. A comparison between acoustic properties and heat effects in biogenic (magnetosomes) and abiotic magnetite nanoparticle suspensions

    Energy Technology Data Exchange (ETDEWEB)

    Józefczak, A., E-mail: aras@amu.edu.pl [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); Leszczyński, B. [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland); Skumiel, A.; Hornowski, T. [Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznań (Poland)

    2016-06-01

    Magnetic nanoparticles show unique properties and find many applications because of the possibility to control their properties using magnetic field. Magnetic nanoparticles are usually synthesized chemically and modification of the particle surface is necessary. Another source of magnetic nanoparticles are various magnetotactic bacteria. These biogenic nanoparticles (magnetosomes) represent an attractive alternative to chemically synthesized iron oxide particles because of their unique characteristics and a high potential for biotechnological and biomedical applications. This work presents a comparison between acoustic properties of biogenic and abiotic magnetite nanoparticle suspensions. Experimental studies have shown the influence of a biological membrane on the ultrasound properties of magnetosomes suspension. Finally the heat effect in synthetic and biogenic magnetite nanoparticles is also discussed. The experimental study shows that magnetosomes present good heating efficiency. - Highlights: • A biogenic and abiotic magnetite nanoparticle suspensions are investigated. • A comparison between ultrasonic properties and heat effects is presented. • Magnetosomes and abiotic magnetite nanoparticles exhibit good heating efficiency.

  2. Aging of biogenic secondary organic aerosol via gas-phase OH radical reactions

    DEFF Research Database (Denmark)

    Donahue, Neil M.; Henry, Kaytlin M.; Mentel, Thomas F.

    2012-01-01

    The Multiple Chamber Aerosol Chemical Aging Study (MUCHACHAS) tested the hypothesis that hydroxyl radical (OH) aging significantly increases the concentration of first-generation biogenic secondary organic aerosol (SOA). OH is the dominant atmospheric oxidant, and MUCHACHAS employed environmental...

  3. Biogenic silica in tidal freshwater marsh sediments and vegetation (Schelde estuary, Belgium)

    NARCIS (Netherlands)

    Struyf, E.; van Damme, S.; Gribsholt, B.; Middelburg, J.J.; Meire, P.

    2005-01-01

    To date, estuarine ecosystem research has mostly neglected silica cycling in freshwater intertidal marshes. However, tidal marshes can store large amounts of biogenic silica (BSi) in vegetation and sediment. BSi content of the typical freshwater marsh plants Phragmites australis, Impatiens

  4. Biogenic amines degradation by malolactic bacteria: towards a potential application in wine

    Directory of Open Access Journals (Sweden)

    Vittorio eCapozzi

    2012-04-01

    Full Text Available Biogenic amines in wine represent a toxicological risk for the health of the consumer, with several trade implications. In this study 26 strains of Lactobacillus plantarum were analysed for their ability to degrade biogenic amines commonly found during wine fermentation. Two strains of L. plantarum were selected in reason of their ability to degrade putrescine and tyramine. The degradation was assessed in vitro, both in presence of the biogenic amines and in presence of the specific chemical precursor and of producer bacteria. The two L. plantarum biotypes were found capable to work synergically. In addition, the survival in wine-like medium and the aptitude to degrade malic acid after alcoholic fermentation of the selected L. plantarum strains was analysed. Our results suggest the potential application of wine L. plantarum strains to design malolactic starter cultures able to degrade biogenic amines in wine.

  5. A comparison between acoustic properties and heat effects in biogenic (magnetosomes) and abiotic magnetite nanoparticle suspensions

    International Nuclear Information System (INIS)

    Józefczak, A.; Leszczyński, B.; Skumiel, A.; Hornowski, T.

    2016-01-01

    Magnetic nanoparticles show unique properties and find many applications because of the possibility to control their properties using magnetic field. Magnetic nanoparticles are usually synthesized chemically and modification of the particle surface is necessary. Another source of magnetic nanoparticles are various magnetotactic bacteria. These biogenic nanoparticles (magnetosomes) represent an attractive alternative to chemically synthesized iron oxide particles because of their unique characteristics and a high potential for biotechnological and biomedical applications. This work presents a comparison between acoustic properties of biogenic and abiotic magnetite nanoparticle suspensions. Experimental studies have shown the influence of a biological membrane on the ultrasound properties of magnetosomes suspension. Finally the heat effect in synthetic and biogenic magnetite nanoparticles is also discussed. The experimental study shows that magnetosomes present good heating efficiency. - Highlights: • A biogenic and abiotic magnetite nanoparticle suspensions are investigated. • A comparison between ultrasonic properties and heat effects is presented. • Magnetosomes and abiotic magnetite nanoparticles exhibit good heating efficiency.

  6. Characterisation and optimisation of a method for the detection and quantification of atmospherically relevant carbonyl compounds in aqueous medium

    Science.gov (United States)

    Rodigast, M.; Mutzel, A.; Iinuma, Y.; Haferkorn, S.; Herrmann, H.

    2015-01-01

    Carbonyl compounds are ubiquitous in the atmosphere and either emitted primarily from anthropogenic and biogenic sources or they are produced secondarily from the oxidation of volatile organic compounds (VOC). Despite a number of studies about the quantification of carbonyl compounds a comprehensive description of optimised methods is scarce for the quantification of atmospherically relevant carbonyl compounds. Thus a method was systematically characterised and improved to quantify carbonyl compounds. Quantification with the present method can be carried out for each carbonyl compound sampled in the aqueous phase regardless of their source. The method optimisation was conducted for seven atmospherically relevant carbonyl compounds including acrolein, benzaldehyde, glyoxal, methyl glyoxal, methacrolein, methyl vinyl ketone and 2,3-butanedione. O-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine hydrochloride (PFBHA) was used as derivatisation reagent and the formed oximes were detected by gas chromatography/mass spectrometry (GC/MS). The main advantage of the improved method presented in this study is the low detection limit in the range of 0.01 and 0.17 μmol L-1 depending on carbonyl compounds. Furthermore best results were found for extraction with dichloromethane for 30 min followed by derivatisation with PFBHA for 24 h with 0.43 mg mL-1 PFBHA at a pH value of 3. The optimised method was evaluated in the present study by the OH radical initiated oxidation of 3-methylbutanone in the aqueous phase. Methyl glyoxal and 2,3-butanedione were found to be oxidation products in the samples with a yield of 2% for methyl glyoxal and 14% for 2,3-butanedione.

  7. Biogenic hardparts: Difficult archives of the geological past (Invited)

    Science.gov (United States)

    Immenhauser, A.; Schone, B. R.; Hoffmann, R.; Niedermayr, A.

    2013-12-01

    Biomineralized exo- or endoskeletons of fossil marine invertebrates are widespread and diverse components of the Phanerozoic rock record of Earth's past and present oceans. Exoskeletons serve as protection against environmental pressure or predators, whilst endoskeletons can act as support or serve as an attachment for muscles and ligaments and hence as a mechanism for transmitting muscular forces. Biogenic hard parts represent sophisticated products resulting from the hierarchical interaction of inorganic minerals (95%) and macromolecular organic matrices, forming commonly less than 5%. The significance of many biogenic carbonate archives lies in the time-resolved growth patterns and their ability to record ambient environmental conditions in the form of multiple geochemical properties (multi-proxy archives) that have been widely used to assess past oceanic seawater properties. Here, we compile and review published work dealing with crystallization pathways of skeletal hard parts secreted by mollusks (i.e., bivalves and cephalopods) as well as brachiopods as widely used archives of ancient neritic epeiric settings. Bivalves and cephalopods (e.g., extinct ammonoids and belemnites and extant Sepia, Nautilus and Spirula) all form accretionary calcitic, aragonitic or vateritic skeletal hard parts. Despite the fact that mollusks and brachiopods form part of very different branches of the animal phylogenetic tree, their biomineralization strategies are surprisingly similar. Our main focus lies in a critical assessment of the complex pathways of ions and aquo-complexes from their source (seawater) to the final product (biomineral). We do this as an attempt to critically test the commonly held hypothesis that many fossil hard parts precipitated (under favorable conditions and pending subsequent diagenetic alteration) in equilibrium with seawater. Two main observations stand out: (1) the present knowledge on pathways and mechanisms (e.g., ion channel trans-membrane or

  8. Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects

    OpenAIRE

    Kooli, Wafa M.; Comensoli, Lucrezia; Maillard, Julien; Albini, Monica; Gelb, Arnaud; Junier, Pilar; Joseph, Edith

    2018-01-01

    Exploiting bacterial metabolism for the stabilisation of corroded iron artefacts is a promising alternative to conventional conservation-restoration methods. Bacterial iron reduction coupled to biogenic mineral formation has been shown to promote the conversion of reactive into stable corrosion products that are integrated into the natural corrosion layer of the object. However, in order to stabilise iron corrosion, the formation of specific biogenic minerals is essential. In this study, we u...

  9. Global comparison reveals biogenic weathering as driven by nutrient limitation at ecosystem scale

    Science.gov (United States)

    Boy, Jens; Godoy, Roberto; Dechene, Annika; Shibistova, Olga; Amir, Hamid; Iskandar, Issi; Fogliano, Bruno; Boy, Diana; McCulloch, Robert; Andrino, Alberto; Gschwendtner, Silvia; Marin, Cesar; Sauheitl, Leopold; Dultz, Stefan; Mikutta, Robert; Guggenberger, Georg

    2017-04-01

    A substantial contribution of biogenic weathering in ecosystem nutrition, especially by symbiotic microorganisms, has often been proposed, but large-scale in vivo studies are still missing. Here we compare a set of ecosystems spanning from the Antarctic to tropical forests for their potential biogenic weathering and its drivers. To address biogenic weathering rates, we installed mineral mesocosms only accessible for bacteria and fungi for up to 4 years, which contained freshly broken and defined nutrient-baring minerals in soil A horizons of ecosystems along a gradient of soil development differing in climate and plant species communities. Alterations of the buried minerals were analyzed by grid-intersection, confocal lascer scanning microscopy, energy-dispersive X-ray spectroscopy, and X-ray photoelectron spectroscopy on the surface and on thin sections. On selected sites, carbon fluxes were tracked by 13C labeling, and microbial community was identified by DNA sequencing. In young ecosystems (protosoils) biogenic weathering is almost absent and starts after first carbon accumulation by aeolian (later litter) inputs and is mainly performed by bacteria. With ongoing soil development and appearance of symbiotic (mycorrhized) plants, nutrient availability in soil increasingly drove biogenic weathering, and fungi became the far more important players than bacteria. We found a close relation between fungal biogenic weathering and available potassium across all 16 forested sites in the study, regardless of the dominant mycorrhiza type (AM or EM), climate, and plant-species composition. We conclude that nutrient limitations at ecosystem scale are generally counteracted by adapted fungal biogenic weathering. The close relation between fungal weathering and plant-available nutrients over a large range of severely contrasting ecosystems points towards a direct energetic support of these weathering processes by the photoautotrophic community, making biogenic weathering a

  10. A mid-Permian chert event: widespread deposition of biogenic siliceous sediments in coastal, island arc and oceanic basins

    Science.gov (United States)

    Murchey, B.L.; Jones, D.L.

    1992-01-01

    Radiolarian and conodont of Permian siliceous rocks from twenty-three areas in teh the circum-Pacific and Mediterranean regions reveal a widespread Permian Chert Event during the middle Leonardian to Wordian. Radiolarian- and (or) sponge spicule-rich siliceous sediments accumulated beneath high productivity zones in coastal, island arc and oceanic basins. Most of these deposits now crop out in fault-bounded accreted terranes. Biogenic siliceous sediments did not accumulate in terranes lying beneath infertile waters including the marine sequences in terranes of northern and central Alaska. The Permian Chert Event is coeval with major phosphorite deposition along the western margin of Pangea (Phosphoria Formation and related deposits). A well-known analogue for this event is middle Miocene deposition of biogenic siliceous sediments beneath high productivity zones in many parts of the Pacific and concurrent deposition of phosphatic as well as siliceous sediments in basins along the coast of California. Interrelated factors associated with both the Miocene and Permian depositional events include plate reorientations, small sea-level rises and cool polar waters. ?? 1992.

  11. Measurements of Potential Secondary Organic Aerosol Formation from OH, O3, and NO3 oxidation of Ambient Air: a Contrast of Different Anthropogenically-Influenced Biogenic Environments

    Science.gov (United States)

    Jimenez, J. L.

    2016-12-01

    Oxidation flow reactors (OFRs) are useful tools for studying potential secondary organic aerosol (SOA) formation from OH, O3, or NO3 oxidation in both laboratory and field experiments. With a several-minute residence time and a portable design with no inlet, OFRs are particularly well-suited for oxidizing ambient air to investigate in situ SOA formation from real ambient precursors. In recent years, our team has pioneered the use of OFRs to quantify SOA potential from a wide variety of environments, including a rural pine forest in the Rocky Mountains, a regionally polluted deciduous/coniferous forest in the SE US, the Amazon rain forest, air influenced by biomass burning, and urban outflow. We present a comparison of the SOA production from these contrasting sources. In all settings, the amount of SOA formed was larger at night than during the day. In forests, the amount of potential SOA after oxidation of ambient air correlated with biogenic precursors (e.g., monoterpenes). In urban air, potential SOA formation correlated instead with reactive anthropogenic tracers (e.g., trimethylbenzene). Despite these correlations, the SOA predicted to be formed by the oxidation of speciated ambient VOC concentrations could only explain approximately 10-50% of the total SOA formed from the oxidation of ambient air, regardless of location. Evidence suggests that lower-volatility gases (semivolatile and intermediate-volatility organic compounds; S/IVOCs) are present in ambient air and are a likely source of the SOA formation that cannot be explained by VOCs. These measurements show that S/IVOCs likely play an important intermediary role in ambient SOA formation in all of the sampled locations, from rural forests to urban air. Characteristics of the SOA formed from different air masses, e.g., H:C and O:C ratios of newly formed SOA as well as PMF factor analysis, will also be discussed.

  12. Impact on short-lived climate forcers (SLCFs) from a realistic land-use change scenario via changes in biogenic emissions.

    Science.gov (United States)

    Scott, C E; Monks, S A; Spracklen, D V; Arnold, S R; Forster, P M; Rap, A; Carslaw, K S; Chipperfield, M P; Reddington, C L S; Wilson, C

    2017-08-24

    More than one quarter of natural forests have been cleared by humans to make way for other land-uses, with changes to forest cover projected to continue. The climate impact of land-use change (LUC) is dependent upon the relative strength of several biogeophysical and biogeochemical effects. In addition to affecting the surface albedo and exchanging carbon dioxide (CO 2 ) and moisture with the atmosphere, vegetation emits biogenic volatile organic compounds (BVOCs), altering the formation of short-lived climate forcers (SLCFs) including aerosol, ozone (O 3 ) and methane (CH 4 ). Once emitted, BVOCs are rapidly oxidised by O 3 , and the hydroxyl (OH) and nitrate (NO 3 ) radicals. These oxidation reactions yield secondary organic products which are implicated in the formation and growth of aerosol particles and are estimated to have a negative radiative effect on the climate (i.e. a cooling). These reactions also deplete OH, increasing the atmospheric lifetime of CH 4 , and directly affect concentrations of O 3 ; the latter two being greenhouse gases which impose a positive radiative effect (i.e. a warming) on the climate. Our previous work assessing idealised deforestation scenarios found a positive radiative effect due to changes in SLCFs; however, since the radiative effects associated with changes to SLCFs result from a combination of non-linear processes it may not be appropriate to scale radiative effects from complete deforestation scenarios according to the deforestation extent. Here we combine a land-surface model, a chemical transport model, a global aerosol model, and a radiative transfer model to assess the net radiative effect of changes in SLCFs due to historical LUC between the years 1850 and 2000.

  13. Land use change affects biogenic silica pool distribution in a subtropical soil toposequence

    Directory of Open Access Journals (Sweden)

    D. Unzué-Belmonte

    2017-07-01

    Full Text Available Land use change (deforestation has several negative consequences for the soil system. It is known to increase erosion rates, which affect the distribution of elements in soils. In this context, the crucial nutrient Si has received little attention, especially in a tropical context. Therefore, we studied the effect of land conversion and erosion intensity on the biogenic silica pools in a subtropical soil in the south of Brazil. Biogenic silica (BSi was determined using a novel alkaline continuous extraction where Si / Al ratios of the fractions extracted are used to distinguish BSi and other soluble fractions: Si / Al > 5 for the biogenic AlkExSi (alkaline-extractable Si and Si / Al < 5 for the non-biogenic AlkExSi. Our study shows that deforestation can rapidly (< 50 years deplete the biogenic AlkExSi pool in soils depending on the slope of the study site (10–53 %, with faster depletion in steeper sites. We show that higher erosion in steeper sites implies increased accumulation of biogenic Si in deposition zones near the bottom of the slope, where rapid burial can cause removal of BSi from biologically active zones. Our study highlights the interaction of erosion strength and land use for BSi redistribution and depletion in a soil toposequence, with implications for basin-scale Si cycling.

  14. [Development of biogenic VOC emissions inventory with high temporal and spatial resolution].

    Science.gov (United States)

    Hu, Y; Zhang, Y; Xie, S; Zeng, L

    2001-11-01

    A new method was developed to estimate biogenic VOC emissions with high temporal and spatial resolution by use of Mesoscale Meteorology Modeling System Version5 (MM5). In this method, the isoprene and monoterpene standard emission factors for some types of tree in China were given and the standard VOC emission factors and seasonally average densities of leaf biomass for all types of vegetation were determined. A biogenic VOC emissions inventory in South China was established which could meet the requirement of regional air quality modeling. Total biogenic VOC emissions in a typical summer day were estimated to be 1.12 x 10(4) metric tons in an area of 729 km x 729 km of South China. The results showed the temporal and spatial distributions of biogenic VOC emission rates in this area. The results also showed that the geographical distribution of biogenic VOC emission rates depended on vegetation types and their distributions and the diurnal variation mainly depended on the solar radiation and temperature. The uncertainties of estimating biogenic VOC emissions were also discussed.

  15. Observations of volatile organic compounds over the North Atlantic Ocean: relationships to dominant cyanobacterial populations.

    Science.gov (United States)

    Swarthout, R.; Rossell, R.; Sive, B. C.; Zhou, Y.; Reddy, C. M.; Valentine, D. L.; Cox, D.

    2017-12-01

    Marine cyanobacteria are abundant primary producers that can have a major influence on the oceanic biogeochemical cycles. In particular, the prominent cyanobacterial genera Prochlorococcus, Synechococcus, and Trichodesmium can impact the air-sea flux of volatile organic compounds (VOCs) including reactive compounds, such as isoprene, that control the oxidative capacity of the atmosphere and climate-relevant compounds, such as dimethyl sulfide. These groups of cyanobacteria have been estimated to increase in abundance by up to 29% by the end of the century as a result of rising sea surface temperatures and dissolved carbon dioxide concentrations. Given their current and predicted future abundance, understanding the role of different cyanobacterial populations on VOC emissions from the ocean is critical in understanding the future oxidative capacity of the remote atmosphere and climate feedback cycles. During the May 2017 Phosphorus, Hydrocarbons, and Transcriptomics cruise aboard the R/V Neil Armstrong, 160 whole air canister samples were collected along a transect through the North Atlantic from Woods Hole, MA to Bermuda and back with 24-hour stops at nine stations encompassing different nutrient regimes and cyanobacterial populations. At each station, a diurnal time series of samples was collected and higher frequency sampling was conducted during transits of the north wall. Canister samples were analyzed on a five-detector gas chromatography system for over 80 individual VOCs including biogenics, aromatics, chlorinated and brominated compounds, and sulfur containing compounds. Trends in reactive and climate-relevant VOCs will be discussed as a function of the predominant cyanobacterial populations at each sample location. These data provide increased information on the spatial and diurnal variability of trace gases associated with these globally important photosynthetic cyanobacteria.

  16. Temperature-dependent Henry's law constants of atmospheric organics of biogenic origin.

    Science.gov (United States)

    Leng, Chunbo; Kish, J Duncan; Kelley, Judas; Mach, Mindy; Hiltner, Joseph; Zhang, Yunhong; Liu, Yong

    2013-10-10

    There have been growing interests in modeling studies to understand oxidation of volatile organic compounds in the gas phase and their mass transfer to the aqueous phase for their potential roles in cloud chemistry, formation of secondary organic aerosols, and fate of atmospheric organics. Temperature-dependent Henry's law constants, key parameters in the atmospheric models to account for mass transfer, are often unavailable. In the present work, we investigated gas-liquid equilibriums of isoprene, limonene, α-pinene, and linalool using a bubble column technique. These compounds, originating from biogenic sources, were selected for their implications in atmospheric cloud chemistry and secondary organic aerosol formation. We reported Henry's law constants (K(H)), first order loss rates (k), and gas phase diffusion coefficients over a range of temperatures relevant to the lower atmosphere (278-298 K) for the first time. The measurement results of K(H) values for isoprene, limonene, α-pinene, and linalool at 298 K were 0.036 ± 0.003; 0.048 ± 0.004; 0.029 ± 0.004; and 21.20 ± 0.30 mol L(-1) atm(-1), respectively. The fraction for these compounds in stratocumulus and cumulonimbus clouds at 278 K were also estimated in this work (isoprene, 1.0 × 10(-6), 6.8 × 10(-6); limonene, 1.5 × 10(-6), 1.0 × 10(-5); α-pinene, 4.5 × 10(-7), 3.1 × 10(-6); and linalool, 6.2 × 10(-4), 4.2 × 10(-3)). Our measurements in combination with literature results indicated that noncyclic alkenes could have smaller K(H) values than those of cyclic terpenes and that K(H) values may increase with an increasing number of double bonds. It was also shown that estimated Henry's law constants and their temperature dependence based on model prediction can differ from experimental results considerably and that direct measurements of temperature-dependent Henry's law constants of atmospheric organics are necessary for future work.

  17. Secondary inorganic aerosols in Europe: sources and the significant influence of biogenic VOC emissions, especially on ammonium nitrate

    Science.gov (United States)

    Aksoyoglu, Sebnem; Ciarelli, Giancarlo; El-Haddad, Imad; Baltensperger, Urs; Prévôt, André S. H.

    2017-06-01

    Contributions of various anthropogenic sources to the secondary inorganic aerosol (SIA) in Europe as well as the role of biogenic emissions on SIA formation were investigated using the three-dimensional regional model CAMx (comprehensive air quality model with extensions). Simulations were carried out for two periods of EMEP field campaigns, February-March 2009 and June 2006, which are representative of cold and warm seasons, respectively. Biogenic volatile organic compounds (BVOCs) are known mainly as precursors of ozone and secondary organic aerosol (SOA), but their role on inorganic aerosol formation has not attracted much attention so far. In this study, we showed the importance of the chemical reactions of BVOCs and how they affect the oxidant concentrations, leading to significant changes, especially in the formation of ammonium nitrate. A sensitivity test with doubled BVOC emissions in Europe during the warm season showed a large increase in secondary organic aerosol (SOA) concentrations (by about a factor of two), while particulate inorganic nitrate concentrations decreased by up to 35 %, leading to a better agreement between the model results and measurements. Sulfate concentrations decreased as well; the change, however, was smaller. The changes in inorganic nitrate and sulfate concentrations occurred at different locations in Europe, indicating the importance of precursor gases and biogenic emission types for the negative correlation between BVOCs and SIA. Further analysis of the data suggested that reactions of the additional terpenes with nitrate radicals at night were responsible for the decline in inorganic nitrate formation, whereas oxidation of BVOCs with OH radicals led to a decrease in sulfate. Source apportionment results suggest that the main anthropogenic source of precursors leading to formation of particulate inorganic nitrate is road transport (SNAP7; see Table 1 for a description of the categories), whereas combustion in energy and

  18. Biogenic amines and hygienic quality of lucerne silage

    Directory of Open Access Journals (Sweden)

    Mlejnkova Veronika

    2016-01-01

    Full Text Available This experiment examined the influence of two different silage additives of biological (Lactococcus lactis, Lactobacillus plantarum, Enterococcus faecium, enzyme xylanase and chemical (43% formic acid, 30% ammonium formate, 10% propionic acid, 2% benzoic acid types on biogenic amines concentration, nutrient content, fermentation process, and microbiologic indicators in lucerne (Medicago sativa silage after 90 days of fermentation. The biological additive significantly (P < 0.05 increased putrescine (+51%, lactic acid (+11% and protein content (+11% in comparison with control silage. It significantly decreased cadaverine (−29%, histamine (−57%, spermidine (−15%, spermine (−55%, acetic acid (−40%, ethanol (−55%, ammonium (−25% and ash (−9%. After the chemical-additive treatment, greater amounts of histamine and tyramine were recorded. Significant decrease was observed in the concentrations of putrescine (−18%, cadaverine (−55%, spermidine (−47%, spermine (−45%, lactic acid (−16%, acetic acid (−46%, ammonium (−59%, ash (−13% and fat (−24%. Populations of bacteria associated with lactic acid fermentation, moulds, yeasts, enterobacteria and total microorganisms count were also influenced. Both biological and chemical additives can be highly recommended for producing high-quality silages meeting hygienic requirements. In lucerne silage, the chemical preservative showed a stronger effect in achieving the health safety of silage compared to the biological inoculant.

  19. Leishmanicidal Activity of Biogenic Fe₃O₄ Nanoparticles.

    Science.gov (United States)

    Khatami, Mehrdad; Alijani, Hajar; Sharifi, Iraj; Sharifi, Fatemeh; Pourseyedi, Shahram; Kharazi, Sam; Lima Nobre, Marcos Augusto; Khatami, Manouchehr

    2017-11-20

    Abstract : Due to the multiplicity of useful applications of metal oxide nanoparticles (ONPs) in medicine are growing exponentially, in this study, Fe₃O₄ (iron oxide) nanoparticles (IONPs) were biosynthesized using Rosemary to evaluate the leishmanicidal efficiency of green synthesized IONPs. This is the first report of the leishmanicidal efficiency of green synthesized IONPs against Leishmania major . The resulting biosynthesized IONPs were characterized by ultraviolet-visible spectroscopy (UV-Vis), X-ray diffraction (XRD), transmission electron microscopy (TEM), and Fourier transform infrared spectroscopy (FTIR). The leishmanicidal activity of IONPS was studied via 3-4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. The results showed the fabrication of the spherical shape of monodisperse IONPs with a size 4 ± 2 nm. The UV-visible spectrophotometer absorption peak was at 334 nm. The leishmanicidal activity of biogenic iron oxide nanoparticles against Leishmania major (promastigote) was also studied. The IC 50 of IONPs was 350 µg/mL. In this report, IONPs were synthesized via a green method. IONPs are mainly spherical and homogeneous, with an average size of about 4 nm, and were synthesized here using an eco-friendly, simple, and inexpensive method.

  20. XENOBIOTICS AND BIOGENIC ELEMENTS IN RAW COW'S MILK

    Directory of Open Access Journals (Sweden)

    Agnieszka Greń

    2012-12-01

    Full Text Available Normal 0 21 false false false SK X-NONE X-NONE This paper presents the concentration some toxic and biogenic elements in milk from Nitra region. The aim of this investigation was to evaluate 30 samples of raw milk with fat contents 3.8% obtained from milk machine in the Nitra region. Samples were analyzed for metal contents using atomic absorption spectrophotometry (AAS. In comparison with maximum acceptable concentration for milk in the food codex of the Slovak republic, the level of contamination with cadmium was exceeded and reached the value 0.221 µg.ml-1. The copper content ranged from 1.201 µg.ml-1 to 5.810 µg.ml-1 and the average concentration reached 3.793 µg.ml-1.  Iron had an average of 1.824 µg.ml-1. Overall in all milk samples high correlations were found. Between positive correlation (0.7019 and negative correlation between of nickel and potassium concentration in raw milk (-0.72 was found. doi:10.5219/246

  1. Leishmanicidal Activity of Biogenic Fe3O4 Nanoparticles

    Directory of Open Access Journals (Sweden)

    Mehrdad Khatami

    2017-11-01

    Full Text Available Abstract: Due to the multiplicity of useful applications of metal oxide nanoparticles (ONPs in medicine are growing exponentially, in this study, Fe3O4 (iron oxide nanoparticles (IONPs were biosynthesized using Rosemary to evaluate the leishmanicidal efficiency of green synthesized IONPs. This is the first report of the leishmanicidal efficiency of green synthesized IONPs against Leishmania major. The resulting biosynthesized IONPs were characterized by ultraviolet-visible spectroscopy (UV-Vis, X-ray diffraction (XRD, transmission electron microscopy (TEM, and Fourier transform infrared spectroscopy (FTIR. The leishmanicidal activity of IONPS was studied via 3-4,5-dimethylthiazol-2-yl-2,5-diphenyltetrazolium bromide (MTT assay. The results showed the fabrication of the spherical shape of monodisperse IONPs with a size 4 ± 2 nm. The UV-visible spectrophotometer absorption peak was at 334 nm. The leishmanicidal activity of biogenic iron oxide nanoparticles against Leishmania major (promastigote was also studied. The IC50 of IONPs was 350 µg/mL. In this report, IONPs were synthesized via a green method. IONPs are mainly spherical and homogeneous, with an average size of about 4 nm, and were synthesized here using an eco-friendly, simple, and inexpensive method.

  2. Cryogenic Displacement and Accumulation of Biogenic Methane in Frozen Soils

    Directory of Open Access Journals (Sweden)

    Gleb Kraev

    2017-06-01

    Full Text Available Evidences of highly localized methane fluxes are reported from the Arctic shelf, hot spots of methane emissions in thermokarst lakes, and are believed to evolve to features like Yamal crater on land. The origin of large methane outbursts is problematic. Here we show, that the biogenic methane (13C ≤ −71‰ which formed before and during soil freezing is presently held in the permafrost. Field and experimental observations show that methane tends to accumulate at the permafrost table or in the coarse-grained lithological pockets surrounded by the sediments less-permeable for gas. Our field observations, radiocarbon dating, laboratory tests and theory all suggest that depending on the soil structure and freezing dynamics, this methane may have been displaced downwards tens of meters during freezing and has accumulated in the lithological pockets. The initial flux of methane from the one pocket disclosed by drilling was at a rate of more than 2.5 kg C(CH4 m−2 h−1. The age of the methane was 8–18 thousand years younger than the age of the sediments, suggesting that it was displaced tens of meters during freezing. The theoretical background provided the insight on the cryogenic displacement of methane in support of the field and experimental data. Upon freezing of sediments, methane follows water migration and either dissipates in the freezing soils or concentrates at certain places controlled by the freezing rate, initial methane distribution and soil structure.

  3. Pharmacological potential of biogenic amine–polyamine interactions beyond neurotransmission

    Science.gov (United States)

    Sánchez-Jiménez, F; Ruiz-Pérez, M V; Urdiales, J L; Medina, M A

    2013-01-01

    Histamine, serotonin and dopamine are biogenic amines involved in intercellular communication with multiple effects on human pathophysiology. They are products of two highly homologous enzymes, histidine decarboxylase and l-aromatic amino acid decarboxylase, and transmit their signals through different receptors and signal transduction mechanisms. Polyamines derived from ornithine (putrescine, spermidine and spermine) are mainly involved in intracellular effects related to cell proliferation and death mechanisms. This review summarizes structural and functional evidence for interactions between components of all these amine metabolic and signalling networks (decarboxylases, transporters, oxidases, receptors etc.) at cellular and tissue levels, distinct from nervous and neuroendocrine systems, where the crosstalk among these amine-related components can also have important pathophysiological consequences. The discussion highlights aspects that could help to predict and discuss the effects of intervention strategies. Linked Articles This article is part of a themed issue on Histamine Pharmacology Update. To view the other articles in this issue visit http://dx.doi.org/10.1111/bph.2013.170.issue-1 PMID:23347064

  4. Bounce behavior of freshly nucleated biogenic secondary organic aerosol particles

    Directory of Open Access Journals (Sweden)

    A. Virtanen

    2011-08-01

    Full Text Available The assessment of the climatic impacts and adverse health effects of atmospheric aerosol particles requires detailed information on particle properties. However, very limited information is available on the morphology and phase state of secondary organic aerosol (SOA particles. The physical state of particles greatly affects particulate-phase chemical reactions, and thus the growth rates of newly formed atmospheric aerosol. Thus verifying the physical phase state of SOA particles gives new and important insight into their formation, subsequent growth, and consequently potential atmospheric impacts. According to our recent study, biogenic SOA particles produced in laboratory chambers from the oxidation of real plant emissions as well as in ambient boreal forest atmospheres can exist in a solid phase in size range >30 nm. In this paper, we extend previously published results to diameters in the range of 17–30 nm. The physical phase of the particles is studied by investigating particle bounce properties utilizing electrical low pressure impactor (ELPI. We also investigate the effect of estimates of particle density on the interpretation of our bounce observations. According to the results presented in this paper, particle bounce clearly decreases with decreasing particle size in sub 30 nm size range. The comparison measurements by ammonium sulphate and investigation of the particle impaction velocities strongly suggest that the decreasing bounce is caused by the differences in composition and phase of large (diameters greater than 30 nm and smaller (diameters between 17 and 30 nm particles.

  5. Oxygen-isotope fractionation between marine biogenic silica and seawater

    Science.gov (United States)

    Matheney, Ronald K.; Knauth, L. Paul

    1989-12-01

    A stepwise fluorination technique has been used to selectively react away the water component of hydrous silica in order to better investigate the oxygen-isotope fractionation between biogenic opal and seawater, and to determine whether all taxa produce opal which is suitable for oxygen isotope paleothermometry. δ 18O of the tetrahedrally coordinated silicate oxygen of siliceous sponge spicules grown at a wide variety of temperatures varies independently of temperature. δ 18O from an Eocene radiolarian ooze sample is much more enriched than would be expected from any reasonable isotopic temperature curve, given the probable growing temperature of the sample. δ 18O of diatom samples seems to vary systematically with temperature and to conform approximately to the isotopic temperature curve for diatom frustules obtained by Labeyrie and coworkers using an entirely different analytical technique. Sponges appear to precipitate silica in isotopic disequilibrium with seawater oxygen, and old radiolarian silica may exchange readily with cold oceanic bottom water. Neither will apparently be useful for paleo-climate reconstructions. Diatoms may be useful in deducing ancient surface-water temperatures, but the systematic variation of α with temperature for diatoms may not be related to the quartz-H 2O equilibrium isotope fractionation.

  6. A marine biogenic source of atmospheric ice-nucleating particles

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, T. W.; Ladino, L. A.; Alpert, Peter A.; Breckels, M. N.; Brooks, I. M.; Browse, J.; Burrows, Susannah M.; Carslaw, K. S.; Huffman, J. A.; Judd, C.; Kilthau, W. P.; Mason, R. H.; McFiggans, Gordon; Miller, L. A.; Najera, J.; Polishchuk, E. A.; Rae, S.; Schiller, C. L.; Si, M.; Vergara Temprado, J.; Whale, Thomas; Wong, J P S; Wurl, O.; Yakobi-Hancock, J. D.; Abbatt, JPD; Aller, Josephine Y.; Bertram, Allan K.; Knopf, Daniel A.; Murray, Benjamin J.

    2015-09-09

    The formation of ice in clouds is facilitated by the presence of airborne ice nucleating particles1,2. Sea spray is one of the major global sources of atmospheric particles, but it is unclear to what extent these particles are capable of nucleating ice3–11. Here we show that material in the sea surface microlayer, which is enriched in surface active organic material representative of that found in sub-micron sea- spray aerosol12–21, nucleates ice under conditions that occur in mixed-phase clouds and high-altitude ice clouds. The ice active material is likely biogenic and is less than ~0.2 ?m in size. We also show that organic material (exudate) released by a common marine diatom nucleates ice when separated from cells and propose that organic material associated with phytoplankton cell exudates are a candidate for the observed ice nucleating ability of the microlayer samples. By combining our measurements with global model simulations of marine organic aerosol, we show that ice nucleating particles of marine origin are dominant in remote marine environments, such as the Southern Ocean, the North Pacific and the North Atlantic.

  7. Assessing Biogenic Methane Content in Various Peatland Landforms Using GPR

    Science.gov (United States)

    Parsekian, A.; Comas, X.; Nolan, J.; Glaser, P.; Chanton, J.; Slater, L.

    2008-12-01

    Northern peatlands are known to be a source of biogenic methane, although efforts to accurately quantify their impact on the global carbon budget are ongoing. An important step towards a better understanding of the dynamics of methane releases to the atmosphere is to identify peatland landforms (i.e. raised bog, fen water track, open pools) where gas is accumulating in the subsurface compared to places where there is little subsurface methane. Additionally, it is important to identify areas of the vertical peat profile where high volumes of free-phase methane are present. In this study, we use ground penetrating radar (GPR) to acquire data on where free-phase gas (FPG) methane may be accumulating within the peat strata, and then make comparisons between various peatland landforms. 1-dimensional GPR common mid-point velocity analysis has been coupled with innovative subsurface gas sampling to identify the areas within northern peatlands that have significant gas trapped below confining layers in the subsurface. Gas samples are evaluated for total recovered volume and total methane concentration in order to support the GPR findings. Traditional 2-dimensional radar profiles were used to identify and estimate the depth at which laterally continuous woody confining layers are present, and therefore zones where gas can be expected to be found. By using 1-D, 2-D and direct sampling methods, it is now possible to identify potential areas of gas accumulation with a higher level of confidence.

  8. Emissions of biogenic sulfur gases from Alaskan tundra

    Science.gov (United States)

    Hines, Mark E.; Morrison, Michael C.

    1992-01-01

    Results of sulfur emission measurements made in freshwater and marine wetlands in Alaskan tundra during the Arctic Boundary Layer Expedition 2A (ABLE 3A) in July 1988 are presented. The data indicate that this type of tundra emits very small amounts of gaseous sulfur and, when extrapolated globally, accounts for a very small percentage of the global flux of biogenic sulfur to the atmosphere. Sulfur emissions from marine sites are up to 20-fold greater than fluxes from freshwater habitats and are dominated by dimethyl sulfide (DMS). Highest emissions, with a mean of 6.0 nmol/sq m/h, occurred in water-saturated wet meadow areas. In drier upland tundra sites, highest fluxes occurred in areas inhabited by mixed vegetation and labrador tea at 3.0 nmol/sq m/h and lowest fluxes were from lichen-dominated areas at 0.9 nmol/sq m/h. DMS was the dominant gas emitted from all these sites. Emissions of DMS were highest from intertidal soils inhabited by Carex subspathacea.

  9. Photochemistry of biogenic emissions over the Amazon forest

    Science.gov (United States)

    Jacob, Daniel J.; Wofsy, Steven C.

    1988-01-01

    The boundary layer chemistry over the Amazon forest during the dry season is simulated with a photochemical model. Results are in good agreement with measurements of isoprene, NO, ozone, and organic acids. Photochemical reactions of biogenic isoprene and NOx can supply most of the ozone observed in the boundary layer. Production of ozone is very sensitive to the availability of NOx, but is insensitive to the isoprene source strength. High concentrations of total odd nitrogen (NOy) are predicted for the planetary boundary layer, about 1 ppb in the mixed layer and 0.75 ppb in the convective cloud layer. Most of the odd nitrogen is present as PAN-type species, which are removed by dry deposition to the forest. The observed daytime variations of isoprene are explained by a strong dependence of the isoprene emission flux on sun angle. Nighttime losses of isoprene exceed rates of reaction with NO3 and O3 and appear to reflect dry-deposition processes. The 24-hour averaged isoprene emission flux is calculated to be 38 mg/sq m per day. Photooxidation of isoprene could account for a large fraction of the CO enrichment observed in the boundary layer under unpolluted conditions and could constitute an important atmospheric source of formic acid, methacrylic acid, and pyruvic acid.

  10. Addressing biogenic greenhouse gas emissions from hydropower in LCA.

    Science.gov (United States)

    Hertwich, Edgar G

    2013-09-03

    The ability of hydropower to contribute to climate change mitigation is sometimes questioned, citing emissions of methane and carbon dioxide resulting from the degradation of biogenic carbon in hydropower reservoirs. These emissions are, however, not always addressed in life cycle assessment, leading to a bias in technology comparisons, and often misunderstood. The objective of this paper is to review and analyze the generation of greenhouse gas emissions from reservoirs for the purpose of technology assessment, relating established emission measurements to power generation. A literature review, data collection, and statistical analysis of methane and CO2 emissions are conducted. In a sample of 82 measurements, methane emissions per kWh hydropower generated are log-normally distributed, ranging from micrograms to 10s of kg. A multivariate regression analysis shows that the reservoir area per kWh electricity is the most important explanatory variable. Methane emissions flux per reservoir area are correlated with the natural net primary production of the area, the age of the power plant, and the inclusion of bubbling emissions in the measurement. Even together, these factors fail to explain most of the variation in the methane flux. The global average emissions from hydropower are estimated to be 85 gCO2/kWh and 3 gCH4/kWh, with a multiplicative uncertainty factor of 2. GHG emissions from hydropower can be largely avoided by ceasing to build hydropower plants with high land use per unit of electricity generated.

  11. Modeling the dynamical sinking of biogenic particles in oceanic flow

    Directory of Open Access Journals (Sweden)

    P. Monroy

    2017-06-01

    Full Text Available We study the problem of sinking particles in a realistic oceanic flow, with major energetic structures in the mesoscale, focussing on the range of particle sizes and densities appropriate for marine biogenic particles. Our aim is to evaluate the relevance of theoretical results of finite size particle dynamics in their applications in the oceanographic context. By using a simplified equation of motion of small particles in a mesoscale simulation of the oceanic velocity field, we estimate the influence of physical processes such as the Coriolis force and the inertia of the particles, and we conclude that they represent negligible corrections to the most important terms, which are passive motion with the velocity of the flow, and a constant added vertical velocity due to gravity. Even if within this approximation three-dimensional clustering of particles can not occur, two-dimensional cuts or projections of the evolving three-dimensional density can display inhomogeneities similar to the ones observed in sinking ocean particles.

  12. Molecular modeling of inorganic compounds

    National Research Council Canada - National Science Library

    Comba, Peter; Hambley, Trevor W; Martin, Bodo

    2009-01-01

    ... mechanics to inorganic and coordination compounds. Initially, simple metal complexes were modeled, but recently the field has been extended to include organometallic compounds, catalysis and the interaction of metal ions with biological macromolecules. The application of molecular mechanics to coordination compounds is complicated by the numbe...

  13. Catalytic properties of niobium compounds

    International Nuclear Information System (INIS)

    Tanabe, K.; Iizuka, T.

    1983-04-01

    The catalytic activity and selectivity of niobium compounds including oxides, salts, organometallic compounds and others are outlined. The application of these compounds as catalysts to diversified reactions is reported. The nature and action of niobium catalysts are characteristic and sometimes anomalous, suggesting the necessity of basic research and the potential use as catalysts for important processes in the chemical industry. (Author) [pt

  14. Relaxed eddy accumulation, a new technique for measuring emission and deposition fluxes of volatile organic compounds by capillary gas chromatography and mass spectrometry.

    Science.gov (United States)

    Ciccioli, P; Brancaleoni, E; Frattoni, M; Marta, S; Brachetti, A; Vitullo, M; Tirone, G; Valentini, R

    2003-01-24

    The possibility afforded by a new relaxed eddy accumulation system in the determination of emission and deposition fluxes of volatile organic compounds (VOCs) by chromatographic techniques will be presented. The system, especially designed to limit sampling artifacts, uses adsorption traps filled with solid sorbents as reservoirs for VOC collection. Enriched compounds were analyzed by capillary GC and positive identification and quantification of eluted compounds was Achieved by mass-spectrometric detection. The method has been used to quantify the emission and deposition of both biogenic and anthropogenic VOCs over a Mediterranean forest ecosystem located in Central Italy. For the first time, both daily and seasonal trends of anthropogenic and biogenic VOCs will be reported. The consistency of monoterpene fluxes with predictions based on the knowledge of VOC emission from the dominant vegetation species will be tested. Data have been used to develop a novel algorithm to predict the seasonality of biogenic emission from the forest ecosystem.

  15. Advances in the Determination of the Speciation of the Carbon Associated with Biogenic Silica Produced by Plants

    Science.gov (United States)

    Masion, A.; Alexandre, A. E.; Ziarelli, F.; Viel, S.; Santos, G.

    2016-12-01

    Biogenic silica resulting from the precipitation of dissolved Si through biological processes in plants, often contains small amounts of occluded organic carbon. These phases, called phytoliths, have a long persistence in soils, making them tracers of past conditions. In this context, the knowledge of the carbon speciation associated with phytoliths bears significant importance in examining the carbon dynamics in soils. With carbon concentrations as low as the 0.1% range, examining the nature of organic carbon remains very challenging, and available tools (e.g. pyrolysis) are often prone to serious artifacts. Recent improvements of microwave sources enabled the application of the Dynamic Nuclear Polarization (DNP) technique to NMR, thereby establishing a new non-destructive tool for the qualitative and quantitative determination of the carbon speciation. Applied to the analysis of phytoliths, this method showed the presence of carbons from different sources within the sample: About 20% of the signal correspond to carbohydrates, and are assigned to photosynthetic carbon; the marked alkyl, N-alkyl and carbonyl signals indicate a significant proportion of proteins. This is consistent with the hypothesis that parts of the carbon associated with the phytoliths is imported into the host plant via uptake from the soil. Finally, lignins, glomalin-like and/or humic-like compounds are minor species associated with biogenic silica. This speciation was obtained overnight with a DNP-NMR set-up with an excellent sensitivity (few tens of weight ppm); the same spectrum on a standard NMR spectrometer would have required at least 250 days of data acquisition. The considerable gain in sensitivity associated with the use of DNP now makes NMR a relevant technique for the analysis of environmental samples.

  16. Estabilidade da sílica biogênica extraída de capim Jaraguá (Hyparrhenia rufa em solução de NaOH Stability of biogenic silica extract of Jaraguá grass (Hyparrhenia rufa in NaOH solution

    Directory of Open Access Journals (Sweden)

    Liovando M. Costa

    2010-01-01

    Full Text Available Biogenic silica is used to describe compounds of hydrated silica (SiO2.nH2O, with specific shapes and sizes, deposited in plants. The chemical composition of biogenic silica and its stability in Jaraguá grass was studied in increasing concentration of NaOH. The analytical results demonstrated high concentration of Si, Al, Fe, Mg, P and low of Cu, Cd and Zn in the phytoliths composition. The silica bodies stability in NaOH solution with increasing concentration was different among the shapes and sizes. Silicified stomata and silicified plant tissues were dissolved along with the dumbbells because they are the less stable forms of biogenic silica.

  17. Biogenic and fossil contributions to organic aerosol at two sites on the North Slope of Alaska

    Science.gov (United States)

    Moffett, Claire; Barrett, Tate; Gunsch, Matthew; Pratt, Kerri; Sheesley, Rebecca

    2017-04-01

    Aerosols both directly and indirectly affect the Earth's albedo by scattering or absorbing solar radiation and acting as cloud and ice condensation nuclei. In order to better understand the variability of aerosol sources in the Alaskan Arctic, this study utilizes radiocarbon analysis for the apportionment of total organic carbon to fossil and contemporary carbon sources. Fossil sources include fossil fuel combustion and secondary organic aerosol (SOA) from fossil precursors while contemporary sources include biomass combustion, primary biogenic emissions, and SOA produced from biogenic and biomass combustion-derived precursors. Total suspended particulate (TSP) samples were collected in August/September 2012, 2015, and 2016 at two Department of Energy Atmospheric Radiation Measurement climate research facilities. Barrow, AK, is located on the northern most point of the United States; the site is 7.4 km north of the village of Barrow (population 4,581). Research shows the site receives minimal aerosol contribution from the village with dominant contributions from long range transport. Oliktok Point, AK, is 300 km south east of Barrow in a region of intense petroleum development. It receives contributions from the petroleum industry surrounding it as well as from long range transport. The proximity of the two sites allows for a finer spatial analysis of Arctic carbonaceous aerosol source contributions. Samples were analyzed for organic carbon (OC), elemental carbon (EC), and radiocarbon (14C) abundance. Preliminary results for 2015 show Barrow had OC concentrations from 0.05 to 0.16 μg/m3, while Oliktok had concentrations of OC from 0.11 to 0.27 μg/m3. EC concentrations ranged from 0.002 to 0.013 μg/m3 in Barrow, 0.002 to 0.088 μg/m3 in Oliktok. In Barrow, 14C abundance shows the contribution of fossil sources remained in the range of 21% to 28%. At Oliktok, analysis reveals an increase from 30% contribution from fossil sources in August to a 70% contribution at

  18. Multipurpose Compound

    Science.gov (United States)

    1983-01-01

    Specially formulated derivatives of an unusual basic compound known as Alcide may be the answer to effective treatment and prevention of the disease bovine mastitis, a bacterial inflammation of a cow's mammary gland that results in loss of milk production and in extreme cases, death. Manufactured by Alcide Corporation the Alcide compound has killed all tested bacteria, virus and fungi, shortly after contact, with minimal toxic effects on humans or animals. Alcide Corporation credits the existence of the mastitis treatment/prevention products to assistance provided the company by NERAC, Inc.

  19. Occurrence and Turnover of Biogenic Sulfur in the Bering Sea During Summer

    Science.gov (United States)

    Li, Cheng-Xuan; Wang, Bao-Dong; Yang, Gui-Peng; Wang, Zi-Cheng; Chen, Jian-Fang; Lyu, Yang

    2017-11-01

    The horizontal/geographical variations in dissolved dimethylsulfide (DMS), its precursor dimethylsulfoniopropionate (DMSPd and DMSPp), and chlorophyll a (Chl a), as well as the oceanographic parameters influencing the concentrations of dimethylated sulfur compounds, were investigated in the Bering Sea from July to August 2012. Similar to Chl a, the surface DMS and DMSPp levels, as well as DMS(P) production and consumption rates, exhibited a declining gradient from the central basin to the continental shelf, with high-value areas appearing in the central basin, the slope regions, and Anadyr Strait but a low-value area occurring on the outer-middle continental shelf. Considerably high values of DMS and DMSP were measured in the saline Bering Sea Basin Deep Water (>2,000 m) located at the southwest of the Bering Basin because of the release of resuspension in 2,000 m depth and the DMSP production from endogenous benthic bacteria and cyanobacteria population. Chl a was positively correlated with DMSPp and DMS in the surface waters and the upper water of the basin, whereas significant negative correlations were found between DMS and nutrients (dissolved inorganic nitrogen [DIN], phosphorus, and silicate) in the inner shelf of the Bering Sea. DMS microbial consumption was approximately 6.26 times faster than the DMS sea-air exchange, demonstrating that the major loss of DMS in the surface water occurred through biological consumption relative to evasion into the atmosphere. Average sea-to-air DMS fluxes were estimated to be 4.66 μmol/(m2·d), and consequently oceanic biogenic DMS emission had a dominant contribution to the sulfur budget over the observational area.

  20. Potential role of stabilized Criegee radicals in sulfuric acid production in a high biogenic VOC environment.

    Science.gov (United States)

    Kim, Saewung; Guenther, Alex; Lefer, Barry; Flynn, James; Griffin, Robert; Rutter, Andrew P; Gong, Longwen; Cevik, Basak Karakurt

    2015-03-17

    We present field observations made in June 2011 downwind of Dallas-Fort Worth, TX, and evaluate the role of stabilized Criegee radicals (sCIs) in gaseous sulfuric acid (H2SO4) production. Zero-dimensional model calculations show that sCI from biogenic volatile organic compounds composed the majority of the sCIs. The main uncertainty associated with an evaluation of H2SO4 production from the sCI reaction channel is the lack of experimentally determined reaction rates for sCIs formed from isoprene ozonolysis with SO2 along with systematic discrepancies in experimentally derived reaction rates between other sCIs and SO2 and water vapor. In general, the maximum of H2SO4 production from the sCI channel is found in the late afternoon as ozone increases toward the late afternoon. The sCI channel, however, contributes minor H2SO4 production compared with the conventional OH channel in the mid-day. Finally, the production and the loss rates of H2SO4 are compared. The application of the recommended mass accommodation coefficient causes significant overestimation of H2SO4 loss rates compared with H2SO4 production rates. However, the application of a lower experimental value for the mass accommodation coefficient provides good agreement between the loss and production rates of H2SO4. The results suggest that the recommended coefficient for the H2O surface may not be suitable for this relatively dry environment.

  1. Direct solid phase microextraction combined with gas chromatography - Mass spectrometry for the determination of biogenic amines in wine.

    Science.gov (United States)

    Papageorgiou, Myrsini; Lambropoulou, Dimitra; Morrison, Calum; Namieśnik, Jacek; Płotka-Wasylka, Justyna

    2018-06-01

    A direct method based on immersion solid phase microextraction (DI-SPME) gas chromatography mass-spectrometry (GC-MS) was optimized and validated for the determination of 16 biogenic amines in Polish wines. In the analysis two internal standards were used: 1,7-diaminoheptane and bis-3-aminopropylamine. The method allows for simultaneous extraction and derivatization, providing a simple and fast mode of extraction and enrichment. Different parameters which affect the extraction procedure were studied and optimized including ionic strength (0-25%), fiber materials (PDMS/DVB, PDMS/DVD + OC, Polyacrylate, Carboxen/PDMS and DVB/CAR/PDMS) and timings of the extraction, derivatization and desorption processes. Validation studies confirmed the linearity, sensitivity, precision and accuracy of the method. The method was successfully applied to the analysis of 44 wine samples originating from several regions of Poland and 3 wine samples from other countries. Analysis showed that many of the samples contained all examined biogenic amines. The method, assessed using an Eco-Scale tool with satisfactory results, was found to be green in terms of hazardous chemicals and solvents usage, energy consumption and production of waste. Therefore the proposed method can be safely used in the wine industry for routine analysis of BAs in wine samples with a minimal detrimental impact on human health and the environment. Copyright © 2018 Elsevier B.V. All rights reserved.

  2. Site-specific global warming potentials of biogenic CO2 for bioenergy: contributions from carbon fluxes and albedo dynamics

    International Nuclear Information System (INIS)

    Cherubini, Francesco; Bright, Ryan M; Strømman, Anders H

    2012-01-01

    Production of biomass for bioenergy can alter biogeochemical and biogeophysical mechanisms, thus affecting local and global climate. Recent scientific developments have mainly embraced impacts from land use changes resulting from area-expanded biomass production, with several extensive insights available. Comparably less attention, however, has been given to the assessment of direct land surface–atmosphere climate impacts of bioenergy systems under rotation such as in plantations and forested ecosystems, whereby land use disturbances are only temporary. Here, following IPCC climate metrics, we assess bioenergy systems in light of two important dynamic land use climate factors, namely, the perturbation in atmospheric carbon dioxide (CO 2 ) concentration caused by the timing of biogenic CO 2 fluxes, and temporary perturbations to surface reflectivity (albedo). Existing radiative forcing-based metrics can be adapted to include such dynamic mechanisms, but high spatial and temporal modeling resolution is required. Results show the importance of specifically addressing the climate forcings from biogenic CO 2 fluxes and changes in albedo, especially when biomass is sourced from forested areas affected by seasonal snow cover. The climate performance of bioenergy systems is highly dependent on biomass species, local climate variables, time horizons, and the climate metric considered. Bioenergy climate impact studies and accounting mechanisms should rapidly adapt to cover both biogeochemical and biogeophysical impacts, so that policy makers can rely on scientifically robust analyses and promote the most effective global climate mitigation options. (letter)

  3. Biogenic glutamic acid-based resin: Its synthesis and application in the removal of cobalt(II)

    Energy Technology Data Exchange (ETDEWEB)

    Jamiu, Zakariyah A.; Saleh, Tawfik A.; Ali, Shaikh A., E-mail: shaikh@kfupm.edu.sa

    2017-04-05

    Highlights: • A novel resin embedded with metal chelating glutamic acid was synthesized. • The biogenic amino acid residues imparted remarkable efficacy to remove Co(II). • The resin showed excellent ability to remove various metals from wastewater. - Abstract: Inexpensive biogenic glutamic acid has been utilized to synthesize a cross-linked dianionic polyelectrolyte (CDAP) containing metal chelating ligands. Cycloterpolymerization, using azoisobutyronitrile as an initiator, of N,N-diallylglutamic acid hydrochloride, sulfur dioxide and a cross-linker afforded a pH-responsive cross-linked polyzwitterionic acid (CPZA) which upon basification with NaOH was converted into CDAP. The new resin, characterized by a multitude of spectroscopic techniques as well as Scanning Electron Microscopy (SEM) and Brunauer–Emmett–Teller (BET) analyses, was evaluated for the removal of Co(II) as a model case under different conditions. The adsorption capacity of 137 mg g{sup −1} does indeed make the resin as one of the most effective sorbents in recent times. The resin leverages its cheap natural source and ease of regeneration in combination with its high and fast uptake capacities to offer a great promise for wastewater treatment. The resin has demonstrated remarkable efficiency in removing toxic metal ions including arsenic from a wastewater sample.

  4. Biogenic glutamic acid-based resin: Its synthesis and application in the removal of cobalt(II)

    International Nuclear Information System (INIS)

    Jamiu, Zakariyah A.; Saleh, Tawfik A.; Ali, Shaikh A.

    2017-01-01

    Highlights: • A novel resin embedded with metal chelating glutamic acid was synthesized. • The biogenic amino acid residues imparted remarkable efficacy to remove Co(II). • The resin showed excellent ability to remove various metals from wastewater. - Abstract: Inexpensive biogenic glutamic acid has been utilized to synthesize a cross-linked dianionic polyelectrolyte (CDAP) containing metal chelating ligands. Cycloterpolymerization, using azoisobutyronitrile as an initiator, of N,N-diallylglutamic acid hydrochloride, sulfur dioxide and a cross-linker afforded a pH-responsive cross-linked polyzwitterionic acid (CPZA) which upon basification with NaOH was converted into CDAP. The new resin, characterized by a multitude of spectroscopic techniques as well as Scanning Electron Microscopy (SEM) and Brunauer–Emmett–Teller (BET) analyses, was evaluated for the removal of Co(II) as a model case under different conditions. The adsorption capacity of 137 mg g −1 does indeed make the resin as one of the most effective sorbents in recent times. The resin leverages its cheap natural source and ease of regeneration in combination with its high and fast uptake capacities to offer a great promise for wastewater treatment. The resin has demonstrated remarkable efficiency in removing toxic metal ions including arsenic from a wastewater sample.

  5. Non-invasive characterization of biogenic gas dynamics in peatlands using the ground penetrating radar (GPR) method

    Science.gov (United States)

    Comas, X.; Slater, L. D.; Reeve, A. S.; Glaser, P. H.; Nolan, J. T.; Parsekian, A.

    2009-12-01

    Several applications of ground penetrating radar (GPR) as a non-invasive technology for investigating carbon cycling in northern peatlands are presented here. The GPR method has been proved as an effective approach for investigating biogenic gas dynamics over a wide range of spatial scales. Unlike other commonly applied techniques used in peatland science, GPR can be employed entirely non-invasively from the surface, and therefore can provide information on the vertical distribution of biogenic gases within the peat structure without disruption to the in situ gas regime. Several applications of the GPR method in peatlands research are presented here and include: (1) imaging of laterally continuous woody layers that may act as confining layers for free phase gas (FPG) accumulation as proposed by others; (2) surface and cross-hole measurements to estimate one-dimensional vertical profiles of variable FPG content and confirm accumulation of FPG below confining layers; (3) non-invasive time-lapse monitoring of FPG production and emissions from a peat column and use of reflection amplitudes to show that, in addition to travel times, amplitude analysis can also yield insights into changes in FPG production and emissions (e.g. via ebullition) from peat soils. We conclude with some further recommendations for future applications of GPR in northern peatlands.

  6. Chemistry of nitrogen oxide compounds

    International Nuclear Information System (INIS)

    Wells, A.

    1987-01-01

    The structure of nitrogen oxide compounds including: nitrates and nitrites, nitrosyl compounds of transition metals, rare earth, transition metal and actinide complexes, where nitrite- and nitrate ions are presented as ligands, is considered. Oxonitrate compounds, e.g. RbUO 2 (NO 3 ) 3 are also considered. The values of lengths and angles of bonds for some of these compounds are presented, volatility of Cd, Be and other metal nitrates are also discussed

  7. Occurrence of gigantic biogenic magnetite during the Paleocene-Eocene Thermal Maximum

    Science.gov (United States)

    Schumann, D.; Raub, T. D.; Kopp, R. E.; Guerquin-Kern, J. L.; Wu, T. D.; Rouiller, I.; Smirnov, A. V.; Sears, S. K.; Lücken, U.; Tikoo, S. M.; Hesse, R.; Kirschvink, J. L.; Vali, H.

    2009-04-01

    crystals up to 4 μm long (eight times larger than magnetite produced by magnetotactic bacteria) and elongated hexaoctahedra up to 1.4 μm long. Similar to magnetite produced by magnetotactic bacteria, these single-crystal particles exhibit chemical composition and lattice perfection consistent with a biogenic origin. The oxygen isotopic composition of indiviual particles supports a low temperature aquatic origin. Electron holography indicates single-domain magnetization despite the large crystal size. In a few cases, we observed apparently intact, tip-outward spherical assemblages of spearhead-like particles that possibly represent the preserved original biological arrangement of these crystals in a hitherto unknown magnetite producing organism. The discovery of these exceptionally large biogenic magnetite crystals that possibly represent the remains of a new microorganism that appeared and disappeared with the PETM sheds some light upon the ecological response to biogeochemical changes that occurred during this warming event. The abundance of fossil magnetotactic bacteria on the Atlantic Coastal Plain during the PETM could be explained by enhanced production, enhanced preservation, or both. The presence of novel magnetofossils, however, argues that changes in growth conditions are a major part of the explanation. Considering that other bacterial magnetofossils are present (although less abundant) and well-preserved in sediments below and above the PETM clay, as well as in a sand lens within the PETM clay [Kopp et al., 2007], suggests that the new magnetofossils are unlikely to be a preservation artefact. We conclude, therefore, that the development of a thick suboxic zone with high iron bioavailability - a product of dramatic changes in weathering and sedimentation patterns driven by severe global warming - resulted in diversification of magnetite-forming organisms, likely including eukaryotes. In this study we extended the search for these new magnetofossils [Schumann

  8. Online measurement of biogenic organic acids in the boreal forest using atmospheric pressure chemical ionization mass spectrometry (APCI-MS)

    Science.gov (United States)

    Vogel, A. L.; Brüggemann, M.; ńijälä, M.; Ehn, M.; Junninen, H.; Corrigan, A. L.; Petäjä, T.; Worsnop, D. R.; Russell, L. M.; Kulmala, M.; Williams, J.; Hoffmann, T.

    2012-04-01

    Emission of biogenic volatile organic compounds (BVOCs) by vegetation in the boreal forest and their subsequent atmospheric oxidation leads to the formation of secondary organic aerosol (SOA) which has important impacts on climate and human health. Oxidation of BVOCs produces a variety of mostly unidentified species in oxygenated organic aerosol (OOA). Presently aerosol mass spectrometers (AMS) are able to determine quantitative information about the relative oxygen to carbon content of organic aerosols and thereby reveal the photochemical age and volatility of organic aerosol by distinguishing between low volatile oxygenated organic aerosol (LV-OOA), semivolatile oxygenated organic aerosol (SV-OOA) and hydrocarbon like organic aerosol (HOA)[1]. However, the AMS can usually not be used to measure and quantify single organic compounds such as individual biogenic organic marker compounds. Here we show the results of online measurements of gas and particle phase biogenic acids during HUMPPA-COPEC 2010 at Hyytiälä, Finland. This was achieved by coupling a self built miniature Versatile Aerosol Concentration Enrichment System (mVACES) as described by Geller et al. [2] with an Atmospheric Pressure Chemical Ionization Ion Trap Mass Spectrometer (APCI IT MS; Hoffmann et al., [3]). The benefits of the on-line APCI-MS are soft ionization with little fragmentation compared to AMS, high measurement frequency and less sampling artifacts than in the common procedure of taking filter samples, extraction and detection with LC-MS. Furthermore, the ion trap of the instrument allows MS/MS experiments to be performed by isolation of single m/z ratios of selected molecular species. By subsequent addition of energy, the trapped ions form characteristic fragments which enable structural insight on the molecular level. Comparison of APCI-MS data to AMS data, acquired with a C-ToF-AMS [4], revealed a good correlation coefficient for total organics and sulphate. Furthermore, data show

  9. Mesoionic Compounds

    Indian Academy of Sciences (India)

    Sydnone, the representative mesoionic compound has been extensively studied because of its unusual structure, chemi- cal properties and synthetic utility. Sydnone is used as a versatile synthon in heterocyclic synthesis. This article gives a brief account of the comparative studies of the structural features of mesoionic ...

  10. Characterization of submicron particles influenced by mixed biogenic and anthropogenic emissions using high-resolution aerosol mass spectrometry: results from CARES

    Energy Technology Data Exchange (ETDEWEB)

    Setyan, Ari; Zhang, Qi; Merkel, M.; Knighton, Walter B.; Sun, Y.; Song, Chen; Shilling, John E.; Onasch, Timothy B.; Herndon, Scott C.; Worsnop, Douglas R.; Fast, Jerome D.; Zaveri, Rahul A.; Berg, Larry K.; Wiedensohler, A.; Flowers, B. A.; Dubey, Manvendra K.; Subramanian, R.

    2012-09-11

    due to local traffic. Twenty three periods of urban plumes from T0 (Sacramento) to T1 (Cool) were identified using the Weather Research and Forecasting model coupled with Chemistry (WRF-Chem). The average PM1 mass loading was much higher in urban plumes (3.9 {micro}gm{sup -3}) than in air masses dominated by biogenic SOA (1.8 {micro}gm{sup -3}). The change in OA mass relative to CO ({Delta}OA/{Delta}CO) varied in the range of 5-196 {micro}gm{sup -3} ppm{sup -1}, reflecting large variability in SOA production. The highest {Delta}OA/{Delta}CO were reached when urban plumes arrived at Cool in the presence of a high concentration of biogenic volatile organic compounds (BVOCs=isoprene+monoterpenes+2-methyl-3-buten-2- ol [MBO]+methyl chavicol). This ratio, which was 77 {micro}gm{sup -3} ppm{sup -1} on average when BVOCs > 2 ppb, is much higher than when urban plumes arrived in a low biogenic VOCs environment (28 {micro}gm{sup -3} ppm{sup -1} when BVOCs < 0.7 ppb) or during other periods dominated by biogenic SOA (40 {micro}gm{sup -3} ppm{sup -1}). The results from this study demon10 strate that SOA formation is enhanced when anthropogenic emissions interact with biogenic precursors.

  11. Stable silicon isotope signatures of marine pore waters - Biogenic opal dissolution versus authigenic clay mineral formation

    Science.gov (United States)

    Ehlert, Claudia; Doering, Kristin; Wallmann, Klaus; Scholz, Florian; Sommer, Stefan; Grasse, Patricia; Geilert, Sonja; Frank, Martin

    2016-10-01

    Dissolved silicon isotope compositions have been analysed for the first time in pore waters (δ30SiPW) of three short sediment cores from the Peruvian margin upwelling region with distinctly different biogenic opal content in order to investigate silicon isotope fractionation behaviour during early diagenetic turnover of biogenic opal in marine sediments. The δ30SiPW varies between +1.1‰ and +1.9‰ with the highest values occurring in the uppermost part close to the sediment-water interface. These values are of the same order or higher than the δ30Si of the biogenic opal extracted from the same sediments (+0.3‰ to +1.2‰) and of the overlying bottom waters (+1.1‰ to +1.5‰). Together with dissolved silicic acid concentrations well below biogenic opal saturation, our collective observations are consistent with the formation of authigenic alumino-silicates from the dissolving biogenic opal. Using a numerical transport-reaction model we find that approximately 24% of the dissolving biogenic opal is re-precipitated in the sediments in the form of these authigenic phases at a relatively low precipitation rate of 56 μmol Si cm-2 yr-1. The fractionation factor between the precipitates and the pore waters is estimated at -2.0‰. Dissolved and solid cation concentrations further indicate that off Peru, where biogenic opal concentrations in the sediments are high, the availability of reactive terrigenous material is the limiting factor for the formation of authigenic alumino-silicate phases.

  12. An approach for verifying biogenic greenhouse gas emissions inventories with atmospheric CO2 concentration data

    International Nuclear Information System (INIS)

    Ogle, Stephen M; Davis, Kenneth; Lauvaux, Thomas; Miles, Natasha L; Richardson, Scott; Schuh, Andrew; Cooley, Dan; Breidt, F Jay; West, Tristram O; Heath, Linda S; Smith, James E; McCarty, Jessica L; Gurney, Kevin R; Tans, Pieter; Denning, A Scott

    2015-01-01

    Verifying national greenhouse gas (GHG) emissions inventories is a critical step to ensure that reported emissions data to the United Nations Framework Convention on Climate Change (UNFCCC) are accurate and representative of a country’s contribution to GHG concentrations in the atmosphere. Furthermore, verifying biogenic fluxes provides a check on estimated emissions associated with managing lands for carbon sequestration and other activities, which often have large uncertainties. We report here on the challenges and results associated with a case study using atmospheric measurements of CO 2 concentrations and inverse modeling to verify nationally-reported biogenic CO 2 emissions. The biogenic CO 2 emissions inventory was compiled for the Mid-Continent region of United States based on methods and data used by the US government for reporting to the UNFCCC, along with additional sources and sinks to produce a full carbon balance. The biogenic emissions inventory produced an estimated flux of −408 ± 136 Tg CO 2 for the entire study region, which was not statistically different from the biogenic flux of −478 ± 146 Tg CO 2 that was estimated using the atmospheric CO 2 concentration data. At sub-regional scales, the spatial density of atmospheric observations did not appear sufficient to verify emissions in general. However, a difference between the inventory and inversion results was found in one isolated area of West-central Wisconsin. This part of the region is dominated by forestlands, suggesting that further investigation may be warranted into the forest C stock or harvested wood product data from this portion of the study area. The results suggest that observations of atmospheric CO 2 concentration data and inverse modeling could be used to verify biogenic emissions, and provide more confidence in biogenic GHG emissions reporting to the UNFCCC. (letter)

  13. Impact of biogenic terpene emissions from Brassica napus on tropospheric ozone over Saxony (Germany): numerical investigation.

    Science.gov (United States)

    Renner, Eberhard; Münzenberg, Annette

    2003-01-01

    The role of biogenic emissions in tropospheric ozone production is currently under discussion and major aspects are not well understood yet. This study aims towards the estimation of the influence of biogenic emissions on tropospheric ozone concentrations over Saxony in general and of biogenic emissions from brassica napus in special. MODELLING TOOLS: The studies are performed by utilizing a coupled numerical modelling system consisting of the meteorological model METRAS and the chemistry transport model MUSCAT. For the chemical part, the Euro-RADM algorithm is used. EMISSIONS: Anthropogenic and biogenic emissions are taken into account. The anthropogenic emissions are introduced by an emission inventory. Biogenic emissions, VOC and NO, are calculated within the chemical transport model MUSCAT at each time step and in each grid cell depending on land use type and on the temperature. The emissions of hydrocarbons from forest areas as well as biogenic NO especially from agricultural grounds are considered. Also terpene emissions from brassica napus fields are estimated. SIMULATION SETUP AND METEOROLOGICAL CONDITIONS: The simulations were performed over an area with an extension of 160 x 140 km2 which covers the main parts of Saxony and neighboring areas of Brandenburg, Sachsen-Anhalt and Thuringia. Summer smog with high ozone concentrations can be expected during high pressure conditions on hot summer days. Typical meteorological conditions for such cases were introduced in an conceptual way. It is estimated that biogenic emissions change tropospheric ozone concentrations in a noticeable way (up to 15% to 20%) and, therefore, should not be neglected in studies about tropospheric ozone. Emissions from brassica napus do have a moderate potential to enhance tropospheric ozone concentrations, but emissions are still under consideration and, therefore, results vary to a high degree. Summing up, the effect of brassica napus terpene emissions on ozone concentrations is

  14. Emission characteristics and variation of volatile odorous compounds in the initial decomposition stage of municipal solid waste.

    Science.gov (United States)

    Tan, Haobo; Zhao, Yan; Ling, Yue; Wang, Ying; Wang, Xuemei

    2017-10-01

    The odour pollution occurring in the initial decomposition stage of municipal solid waste (MSW), including collection, transfer and transportation, has not been sufficiently emphasised. Thus the emission characteristics of and variation in odorant generation in this stage were investigated through simulation experiments at different temperatures, waste composition and processing durations. Out of 120 odorous compounds, 52 were detected in seven categories under all tested conditions, with significant variations. In the total concentration and emission rate, ethanol generally showed the largest proportion (larger than 80% on average), followed by unsaturated hydrocarbons which were dominated by propylene (13.1% on average of concentration proportion). The total emissions rapidly increased with processing duration when the temperatures were 15°C to 30°C. The proportion of ethanol increased significantly from 40.1% at 6h to 82.9% at 24h at 30°C. By contrast, a low temperature (5°C) resulted in low concentrations, and propylene accounted for the largest proportion instead of ethanol. With increasing temperature, biogenic compounds with large proportions increased more rapidly than xenobiotic compounds because of accelerated biological process and volatilisation. The emission rates of oxygenated compounds, saturated hydrocarbons, unsaturated hydrocarbons and halogenated compounds significantly increased (by approximately 20% to 50%) with an increase in easily biodegradable portion in the MSW. The proportions were relatively stable with the MSW composition variation, suggesting that most xenobiotic compounds were also derived from easily degradable portions. The olfactory evaluation showed that organic sulphur compounds contributed the most (approximately 75% to 95%) to odour pollution at the beginning of the stage because of their extremely low olfactory thresholds, with methanethiol as the dominant contributor (approximately 50% to 80% when detected). Results of

  15. Evidence of a reduction in cloud condensation nuclei activity of water-soluble aerosols caused by biogenic emissions in a cool-temperate forest.

    Science.gov (United States)

    Müller, Astrid; Miyazaki, Yuzo; Tachibana, Eri; Kawamura, Kimitaka; Hiura, Tsutom

    2017-08-16

    Biogenic organic aerosols can affect cloud condensation nuclei (CCN) properties, and subsequently impact climate change. Large uncertainties exist in how the difference in the types of terrestrial biogenic sources and the abundance of organics relative to sulfate affect CCN properties. For the submicron water-soluble aerosols collected for two years in a cool-temperate forest in northern Japan, we show that the hygroscopicity parameter κ CCN (0.44 ± 0.07) exhibited a distinct seasonal trend with a minimum in autumn (κ CCN  = 0.32-0.37); these κ CCN values were generally larger than that of ambient particles, including water-insoluble fractions. The temporal variability of κ CCN was controlled by the water-soluble organic matter (WSOM)-to-sulfate ratio (R 2  > 0.60), where the significant reduction of κ CCN in autumn was linked to the increased WSOM/sulfate ratio. Positive matrix factorization analysis indicates that α-pinene-derived secondary organic aerosol (SOA) substantially contributed to the WSOM mass (~75%) in autumn, the majority of which was attributable to emissions from litter/soil microbial activity near the forest floor. These findings suggest that WSOM, most likely α-pinene SOA, originated from the forest floor can significantly suppress the aerosol CCN activity in cool-temperate forests, which have implications for predicting climate effects by changes in biogenic emissions in future.

  16. Speleothems from Mawsmai and Krem Phyllut caves, Meghalaya, India: some evidences on biogenic activities

    Science.gov (United States)

    Baskar, Sushmitha; Baskar, R.; Lee, Natuschka; Theophilus, P. K.

    2009-05-01