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Sample records for biochemical networks quasi-stationary

  1. Stationary spectra in a quasi neutral current-carrying plasma

    International Nuclear Information System (INIS)

    Vakulenko, M.O.

    1992-01-01

    The low-frequency short-wave equilibrium spectra of electromagnetic fluctuations are obtained, accounting for cross-field correlations. The statistical analysis shows that a longitudinal current in a dense quasi neutral (α e ≡4πnomec 2 /Bo 2 >>1) plasma destroys the stationary of fluctuation spectra corresponding to zero fluxes of motion invariants, and may alter also the anomalous electron heat conductivity. 2 refs. (author)

  2. High-power plasma dynamic systems of quasi-stationary type in IPP NSK KIPT: results and prospects

    International Nuclear Information System (INIS)

    Solyakov, D.G.

    2015-01-01

    This paper is devoted to brief review of main experimental results of investigations of high-power quasi-stationary plasma dynamic systems in the IPP NSC KIPT. In experiments were shown that to received accelerated plasma streams with high value of energy in quasi-stationary modes all conditions on the accelerating channel boundary should be controlled independently. As a results of optimizations of the modes of operation all QSPA active elements quasi-stationary plasma flow in the channel during 480 μs at discharge durations 550μs was obtained. The plasma streams velocity was close to theoretical limit for present experimental conditions. Plasma streams with maximum velocity up to 4.2 · 10 7 cm/s and total value of energy containment in the stream 0.4...0.6 MJ were received. The main properties of compression zone formation in the plasma streams generated by magneto-plasma compressor in quasi-stationary modes were investigated. In experiments were shown that initial conditions, namely residual pressure in the vacuum chamber made a big influence on the value of plasma density in compression zone. Compressive plasma streams with density (2...4)·10 18 cm -3 during 20...25μs at discharge duration 10μs were obtained. This value of plasma density is close to theoretical limit for present experimental conditions

  3. Virtual Stationary Automata for Mobile Networks

    National Research Council Canada - National Science Library

    Dolev, Shlomi; Gilbert, Seth; Lahiani, Limor; Lynch, Nancy; Nolte, Tina

    2005-01-01

    We define a programming abstraction for mobile networks called the Virtual Stationary Automata programming layer, consisting of real mobile clients, virtual timed I/O automata called virtual stationary automata (VSAs...

  4. Self-modified quasi-stationary model for the radiation ablation

    International Nuclear Information System (INIS)

    Zhang Jun; Pei Wenbing; Gu Peijun; Sui Chengzhi; Chang Tieqiang

    1996-01-01

    The self-modified quasi-stationary model for radiation ablation has been established based on physical picture of numerical simulations. The objective of the model is to predict quantitatively the scaling laws of various ablation parameters driven by soft-X-ray, such as the dependence of ablation depth, pressure on radiation temperature, energy, pulse width, without resorting to complex computer simulations. The computational results are given for some interesting materials in ICF. Scaling laws obtained are simple and effective in target design and analysis of experimental results

  5. Quasi-stationary gravitational collapse of slowly rotating bodies in general relativity

    Energy Technology Data Exchange (ETDEWEB)

    Miller, J C [Oxford Univ. (UK). Dept. of Astrophysics

    1977-05-01

    This paper presents results of quasi-stationary collapse calculations for a class of slowly rotating non-homogeneous bodies in general relativity. The results are qualitatively similar to those obtained previously for homogeneous models indicating that the effects described for the homogeneous models are likely to have some relevance for the gravitational collapse of real stars towards the black hole state. There is also a discussion of some basic questions associated with such calculations.

  6. RMBNToolbox: random models for biochemical networks

    Directory of Open Access Journals (Sweden)

    Niemi Jari

    2007-05-01

    Full Text Available Abstract Background There is an increasing interest to model biochemical and cell biological networks, as well as to the computational analysis of these models. The development of analysis methodologies and related software is rapid in the field. However, the number of available models is still relatively small and the model sizes remain limited. The lack of kinetic information is usually the limiting factor for the construction of detailed simulation models. Results We present a computational toolbox for generating random biochemical network models which mimic real biochemical networks. The toolbox is called Random Models for Biochemical Networks. The toolbox works in the Matlab environment, and it makes it possible to generate various network structures, stoichiometries, kinetic laws for reactions, and parameters therein. The generation can be based on statistical rules and distributions, and more detailed information of real biochemical networks can be used in situations where it is known. The toolbox can be easily extended. The resulting network models can be exported in the format of Systems Biology Markup Language. Conclusion While more information is accumulating on biochemical networks, random networks can be used as an intermediate step towards their better understanding. Random networks make it possible to study the effects of various network characteristics to the overall behavior of the network. Moreover, the construction of artificial network models provides the ground truth data needed in the validation of various computational methods in the fields of parameter estimation and data analysis.

  7. Automatically stable discontinuous Petrov-Galerkin methods for stationary transport problems: Quasi-optimal test space norm

    KAUST Repository

    Niemi, Antti H.

    2013-12-01

    We investigate the application of the discontinuous Petrov-Galerkin (DPG) finite element framework to stationary convection-diffusion problems. In particular, we demonstrate how the quasi-optimal test space norm improves the robustness of the DPG method with respect to vanishing diffusion. We numerically compare coarse-mesh accuracy of the approximation when using the quasi-optimal norm, the standard norm, and the weighted norm. Our results show that the quasi-optimal norm leads to more accurate results on three benchmark problems in two spatial dimensions. We address the problems associated to the resolution of the optimal test functions with respect to the quasi-optimal norm by studying their convergence numerically. In order to facilitate understanding of the method, we also include a detailed explanation of the methodology from the algorithmic point of view. © 2013 Elsevier Ltd. All rights reserved.

  8. Automatically stable discontinuous Petrov-Galerkin methods for stationary transport problems: Quasi-optimal test space norm

    KAUST Repository

    Niemi, Antti H.; Collier, Nathan; Calo, Victor M.

    2013-01-01

    We investigate the application of the discontinuous Petrov-Galerkin (DPG) finite element framework to stationary convection-diffusion problems. In particular, we demonstrate how the quasi-optimal test space norm improves the robustness of the DPG method with respect to vanishing diffusion. We numerically compare coarse-mesh accuracy of the approximation when using the quasi-optimal norm, the standard norm, and the weighted norm. Our results show that the quasi-optimal norm leads to more accurate results on three benchmark problems in two spatial dimensions. We address the problems associated to the resolution of the optimal test functions with respect to the quasi-optimal norm by studying their convergence numerically. In order to facilitate understanding of the method, we also include a detailed explanation of the methodology from the algorithmic point of view. © 2013 Elsevier Ltd. All rights reserved.

  9. Biochemical Network Stochastic Simulator (BioNetS: software for stochastic modeling of biochemical networks

    Directory of Open Access Journals (Sweden)

    Elston Timothy C

    2004-03-01

    Full Text Available Abstract Background Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true for pathways that involve transcriptional regulation, where generally there are two copies of each gene and the number of messenger RNA (mRNA molecules can be small. Therefore, there is a need for computational tools for developing and investigating stochastic models of biochemical networks. Results We have developed the software package Biochemical Network Stochastic Simulator (BioNetS for efficientlyand accurately simulating stochastic models of biochemical networks. BioNetS has a graphical user interface that allows models to be entered in a straightforward manner, and allows the user to specify the type of random variable (discrete or continuous for each chemical species in the network. The discrete variables are simulated using an efficient implementation of the Gillespie algorithm. For the continuous random variables, BioNetS constructs and numerically solvesthe appropriate chemical Langevin equations. The software package has been developed to scale efficiently with network size, thereby allowing large systems to be studied. BioNetS runs as a BioSpice agent and can be downloaded from http://www.biospice.org. BioNetS also can be run as a stand alone package. All the required files are accessible from http://x.amath.unc.edu/BioNetS. Conclusions We have developed BioNetS to be a reliable tool for studying the stochastic dynamics of large biochemical networks. Important features of BioNetS are its ability to handle hybrid models that consist of both continuous and discrete random variables and its ability to model cell growth and division. We have verified the accuracy and efficiency of the numerical methods by considering several test systems.

  10. Quasi-Stationary Temperature Field of Two-Layer Half-Space with Moving Boundary

    Directory of Open Access Journals (Sweden)

    P. A. Vlasov

    2015-01-01

    Full Text Available Due to intensive introduction of mathematical modeling methods into engineering practice, analytical methods for solving problems of heat conduction theory along with computational methods become increasingly important. Despite the well-known limitations of the analytical method applicability, this trend is caused by many reasons. In particular, solutions of the appropriate problems presented in analytically closed form can be used to test the new efficient computational algorithms, to carry out a parametric study of the temperature field of the analyzed system and to explore specific features of its formation, to formulate and solve optimization problems. In addition, these solutions allow us to explore the possibility for simplifying mathematical model with retaining its adequacy to the studied process.The main goal of the conducted research is to provide an analytically closed-form solution to the problem of finding the quasi-stationary temperature field of the system, which is simulated by isotropic half-space with isotropic coating of constant thickness. The outer boundary of this system is exposed to the Gaussian-type heat flux and uniformly moves in parallel with itself.A two-dimensional mathematical model that takes into account the axial symmetry of the studied process has been used. After the transition to a moving coordinate system rigidly associated with a moving boundary the Hankel integral transform of zero order (with respect to the radial variable and the Laplace transform (with respect to the temporal variable were used. Next, the image of the Hankel transform for the stationary temperature field of the system with respect to the moving coordinate system was found using a limit theorem of operational calculus. This allowed representing the required quasi-stationary field in the form of an improper integral of the first kind, which depends on the parameters. This result obtained can be used to conduct a parametric study and solve

  11. A quasi-stationary approach to particle concentration and distribution in gear oil for wear mode estimation

    DEFF Research Database (Denmark)

    Henneberg, Morten; Eriksen, René Lynge; Jørgensen, Bent

    2015-01-01

    that particles less than 14 μm dominate the wear. Hence, it is concluded that abrasion dominate the wear, for the gear in operation, and it is concluded to be in quasi-stationary mode. The distribution of the particles is observed in conjunction with the particle quantity to determine a basis for normal...... operation. Limitations to the model in lack of fitting to large and frequent signal spikes are suggested to be caused by measurement equipment and/or model constraints. Predicting the transition from quasi-stationary (normal) mode to break-down mode is made possible by particle quantity detection as well......Suspension of wear particles in gear oil with respect to the diversity of particle size combined with filter mechanisms has been analyzed. Coupling of wear modes from tribology is combined with particle size bins to show how a mathematical model can be expanded to include information gained from...

  12. Quasi-stationary states and fermion pair creation from a vacuum in supercritical Coulomb field

    Science.gov (United States)

    Khalilov, V. R.

    2017-12-01

    Creation of charged fermion pair from a vacuum in so-called supercritical Coulomb potential is examined for the case when fermions can move only in the same (one) plane. In which case, quantum dynamics of charged massive or massless fermions can be described by the two-dimensional Dirac Hamiltonians with an usual (-a/r) Coulomb potential. These Hamiltonians are singular and require the additional definition in order for them to be treated as self-adjoint quantum-mechanical operators. We construct the self-adjoint two-dimensional Dirac Hamiltonians with a Coulomb potential and determine the quantum-mechanical states for such Hamiltonians in the corresponding Hilbert spaces of square-integrable functions. We determine the scattering amplitude in which the self-adjoint extension parameter is incorporated and then obtain equations implicitly defining possible discrete energy spectra of the self-adjoint Dirac Hamiltonians with a Coulomb potential. It is shown that this quantum system becomes unstable in the presence of a supercritical Coulomb potential which manifests in the appearance of quasi-stationary states in the lower (negative) energy continuum. The energy spectrum of those states is quasi-discrete, consists of broadened levels with widths related to the inverse lifetimes of the quasi-stationary states as well as the probability of creation of charged fermion pair by a supercritical Coulomb field. Explicit analytical expressions for the creation probabilities of charged (massive or massless) fermion pair are obtained in a supercritical Coulomb field.

  13. Three-Dimensional Network Model for Coupling of Fracture and Mass Transport in Quasi-Brittle Geomaterials

    Directory of Open Access Journals (Sweden)

    Peter Grassl

    2016-09-01

    Full Text Available Dual three-dimensional networks of structural and transport elements were combined to model the effect of fracture on mass transport in quasi-brittle geomaterials. Element connectivity of the structural network, representing elasticity and fracture, was defined by the Delaunay tessellation of a random set of points. The connectivity of transport elements within the transport network was defined by the Voronoi tessellation of the same set of points. A new discretisation strategy for domain boundaries was developed to apply boundary conditions for the coupled analyses. The properties of transport elements were chosen to evolve with the crack opening values of neighbouring structural elements. Through benchmark comparisons involving non-stationary transport and fracture, the proposed dual network approach was shown to be objective with respect to element size and orientation.

  14. Reduced linear noise approximation for biochemical reaction networks with time-scale separation: The stochastic tQSSA+

    Science.gov (United States)

    Herath, Narmada; Del Vecchio, Domitilla

    2018-03-01

    Biochemical reaction networks often involve reactions that take place on different time scales, giving rise to "slow" and "fast" system variables. This property is widely used in the analysis of systems to obtain dynamical models with reduced dimensions. In this paper, we consider stochastic dynamics of biochemical reaction networks modeled using the Linear Noise Approximation (LNA). Under time-scale separation conditions, we obtain a reduced-order LNA that approximates both the slow and fast variables in the system. We mathematically prove that the first and second moments of this reduced-order model converge to those of the full system as the time-scale separation becomes large. These mathematical results, in particular, provide a rigorous justification to the accuracy of LNA models derived using the stochastic total quasi-steady state approximation (tQSSA). Since, in contrast to the stochastic tQSSA, our reduced-order model also provides approximations for the fast variable stochastic properties, we term our method the "stochastic tQSSA+". Finally, we demonstrate the application of our approach on two biochemical network motifs found in gene-regulatory and signal transduction networks.

  15. A model for studying time dependent quantum mechanical processes and its application for quasi-stationary states

    International Nuclear Information System (INIS)

    Revai, Janos.

    1988-10-01

    A model was attempted to construct which, on one hand, is flexible enough to imitate certain physical properties of real systems and, on the other hand, allows exact solution of its time dependent dynamics. This double goal is proposed to achieve by using separable interactions. A particle moving in an external field consisting of a stationary attractive and a time dependent repulsive part is proposed for the model in question. Due to the use of separable interactions, the time evolution dynamics can be solved exactly, and the model can be applied for studying time evolution of quasi-stationary states. (R.P.) 7 figs

  16. On the Adaptive Design Rules of Biochemical Networks in Evolution

    Directory of Open Access Journals (Sweden)

    Bor-Sen Chen

    2007-01-01

    Full Text Available Biochemical networks are the backbones of physiological systems of organisms. Therefore, a biochemical network should be sufficiently robust (not sensitive to tolerate genetic mutations and environmental changes in the evolutionary process. In this study, based on the robustness and sensitivity criteria of biochemical networks, the adaptive design rules are developed for natural selection in the evolutionary process. This will provide insights into the robust adaptive mechanism of biochemical networks in the evolutionary process. We find that if a mutated biochemical network satisfies the robustness and sensitivity criteria of natural selection, there is a high probability for the biochemical network to prevail during natural selection in the evolutionary process. Since there are various mutated biochemical networks that can satisfy these criteria but have some differences in phenotype, the biochemical networks increase their diversities in the evolutionary process. The robustness of a biochemical network enables co-option so that new phenotypes can be generated in evolution. The proposed robust adaptive design rules of natural selection gain much insight into the evolutionary mechanism and provide a systematic robust biochemical circuit design method of biochemical networks for biotechnological and therapeutic purposes in the future.

  17. Conditions for the existence of quasi-stationary distributions for birth–death processes with killing

    OpenAIRE

    van Doorn, Erik A.

    2012-01-01

    We consider birth-death processes on the nonnegative integers, where $\\{1,2,...\\}$ is an irreducible class and $0$ an absorbing state, with the additional feature that a transition to state $0$ (killing) may occur from any state. Assuming that absorption at $0$ is certain we are interested in additional conditions on the transition rates for the existence of a quasi-stationary distribution. Inspired by results of M. Kolb and D. Steinsaltz (Quasilimiting behaviour for one-dimensional diffusion...

  18. Calculation of quasi-stationary states parameters within the algebraic version of the resonating group method

    International Nuclear Information System (INIS)

    Okhrimenko, I.P.

    1984-01-01

    The dynamical equations of the algebraic version of the resonating group method are used to determine the positions and the widths of quasi-stationary states or to find the poles of the S-matrix in the fourth quadrant of the K-plane. Concrete calculations are performed by the example of an α-decay of 8 Be. A comparison with the results of the other authors and experiment is made

  19. Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

    Science.gov (United States)

    Papin, Jason A; Reed, Jennifer L; Palsson, Bernhard O

    2004-12-01

    As reconstructed biochemical reaction networks continue to grow in size and scope, there is a growing need to describe the functional modules within them. Such modules facilitate the study of biological processes by deconstructing complex biological networks into conceptually simple entities. The definition of network modules is often based on intuitive reasoning. As an alternative, methods are being developed for defining biochemical network modules in an unbiased fashion. These unbiased network modules are mathematically derived from the structure of the whole network under consideration.

  20. A Search Model with a Quasi-Network

    DEFF Research Database (Denmark)

    Ejarque, Joao Miguel

    This paper adds a quasi-network to a search model of the labor market. Fitting the model to an average unemployment rate and to other moments in the data implies the presence of the network is not noticeable in the basic properties of the unemployment and job finding rates. However, the network...

  1. Kinetic description of quasi-stationary axisymmetric collisionless accretion disk plasmas with arbitrary magnetic field configurations

    International Nuclear Information System (INIS)

    Cremaschini, Claudio; Miller, John C.; Tessarotto, Massimo

    2011-01-01

    A kinetic treatment is developed for collisionless magnetized plasmas occurring in high-temperature, low-density astrophysical accretion disks, such as are thought to be present in some radiatively inefficient accretion flows onto black holes. Quasi-stationary configurations are investigated, within the framework of a Vlasov-Maxwell description. The plasma is taken to be axisymmetric and subject to the action of slowly time-varying gravitational and electromagnetic fields. The magnetic field is assumed to be characterized by a family of locally nested but open magnetic surfaces. The slow collisionless dynamics of these plasmas is investigated, yielding a reduced gyrokinetic Vlasov equation for the kinetic distribution function. For doing this, an asymptotic quasi-stationary solution is first determined, represented by a generalized bi-Maxwellian distribution expressed in terms of the relevant adiabatic invariants. The existence of the solution is shown to depend on having suitable kinetic constraints and conditions leading to particle trapping phenomena. With this solution, one can treat temperature anisotropy, toroidal and poloidal flow velocities, and finite Larmor-radius effects. An asymptotic expansion for the distribution function permits analytic evaluation of all the relevant fluid fields. Basic theoretical features of the solution and their astrophysical implications are discussed. As an application, the possibility of describing the dynamics of slowly time-varying accretion flows and the self-generation of magnetic field by means of a ''kinetic dynamo effect'' are discussed. Both effects are shown to be related to intrinsically kinetic physical mechanisms.

  2. Characterizing multistationarity regimes in biochemical reaction networks.

    Directory of Open Access Journals (Sweden)

    Irene Otero-Muras

    Full Text Available Switch like responses appear as common strategies in the regulation of cellular systems. Here we present a method to characterize bistable regimes in biochemical reaction networks that can be of use to both direct and reverse engineering of biological switches. In the design of a synthetic biological switch, it is important to study the capability for bistability of the underlying biochemical network structure. Chemical Reaction Network Theory (CRNT may help at this level to decide whether a given network has the capacity for multiple positive equilibria, based on their structural properties. However, in order to build a working switch, we also need to ensure that the bistability property is robust, by studying the conditions leading to the existence of two different steady states. In the reverse engineering of biological switches, knowledge collected about the bistable regimes of the underlying potential model structures can contribute at the model identification stage to a drastic reduction of the feasible region in the parameter space of search. In this work, we make use and extend previous results of the CRNT, aiming not only to discriminate whether a biochemical reaction network can exhibit multiple steady states, but also to determine the regions within the whole space of parameters capable of producing multistationarity. To that purpose we present and justify a condition on the parameters of biochemical networks for the appearance of multistationarity, and propose an efficient and reliable computational method to check its satisfaction through the parameter space.

  3. Impact of the updating scheme on stationary states of networks

    International Nuclear Information System (INIS)

    Radicchi, F; Ahn, Y Y; Meyer-Ortmanns, H

    2008-01-01

    From Boolean networks it is well known that the number of attractors as a function of the system size depends on the updating scheme which is chosen either synchronously or asynchronously. In this contribution, we report on a systematic interpolation between synchronous and asynchronous updating in a one-dimensional chain of Ising spins. The stationary state for fully synchronous updating is antiferromagnetic. The interpolation allows us to locate a phase transition between phases with an absorbing and a fluctuating stationary state. The associated universality class is that of parity conservation. We also report on a more recent study of asynchronous updates applied to the yeast cell-cycle network. Compared to the synchronous update, the basin of attraction of the largest attractor considerably shrinks and the convergence to the biological pathway slows down and is less dominant. Both examples illustrate how sensitively the stationary states and the properties of attractors can depend on the updating mode of the algorithm

  4. Neural networks prediction and fault diagnosis applied to stationary and non stationary ARMA (Autoregressive moving average) modeled time series

    International Nuclear Information System (INIS)

    Marseguerra, M.; Minoggio, S.; Rossi, A.; Zio, E.

    1992-01-01

    The correlated noise affecting many industrial plants under stationary or cyclo-stationary conditions - nuclear reactors included -has been successfully modeled by autoregressive moving average (ARMA) due to the versatility of this technique. The relatively recent neural network methods have similar features and much effort is being devoted to exploring their usefulness in forecasting and control. Identifying a signal by means of an ARMA model gives rise to the problem of selecting its correct order. Similar difficulties must be faced when applying neural network methods and, specifically, particular care must be given to the setting up of the appropriate network topology, the data normalization procedure and the learning code. In the present paper the capability of some neural networks of learning ARMA and seasonal ARMA processes is investigated. The results of the tested cases look promising since they indicate that the neural networks learn the underlying process with relative ease so that their forecasting capability may represent a convenient fault diagnosis tool. (Author)

  5. Optimal Information Processing in Biochemical Networks

    Science.gov (United States)

    Wiggins, Chris

    2012-02-01

    A variety of experimental results over the past decades provide examples of near-optimal information processing in biological networks, including in biochemical and transcriptional regulatory networks. Computing information-theoretic quantities requires first choosing or computing the joint probability distribution describing multiple nodes in such a network --- for example, representing the probability distribution of finding an integer copy number of each of two interacting reactants or gene products while respecting the `intrinsic' small copy number noise constraining information transmission at the scale of the cell. I'll given an overview of some recent analytic and numerical work facilitating calculation of such joint distributions and the associated information, which in turn makes possible numerical optimization of information flow in models of noisy regulatory and biochemical networks. Illustrating cases include quantification of form-function relations, ideal design of regulatory cascades, and response to oscillatory driving.

  6. Stationary oscillation for nonautonomous bidirectional associative memory neural networks with impulse

    International Nuclear Information System (INIS)

    Zhang Yinping

    2009-01-01

    In this paper, we study the existence, uniqueness and global stability of periodic solution (i.e. stationary oscillation) for general bidirectional associative memory neural networks with impulses. Some sufficient conditions are obtained for stationary oscillation of the nonautonomous bidirectional associative memory neural networks with impulses. It is derived by using a new method which is different from those of previous literatures, and a assumption in previous results does not required. The model considered is more general and some previous results are extended and improved. An illustrative example is given to demonstrate the effectiveness and less conservativeness of the obtained results.

  7. Damping of Quasi-stationary Waves Between Two Miscible Liquids

    Science.gov (United States)

    Duval, Walter M. B.

    2002-01-01

    Two viscous miscible liquids with an initially sharp interface oriented vertically inside a cavity become unstable against oscillatory external forcing due to Kelvin-Helmholtz instability. The instability causes growth of quasi-stationary (q-s) waves at the interface between the two liquids. We examine computationally the dynamics of a four-mode q-s wave, for a fixed energy input, when one of the components of the external forcing is suddenly ceased. The external forcing consists of a steady and oscillatory component as realizable in a microgravity environment. Results show that when there is a jump discontinuity in the oscillatory excitation that produced the four-mode q-s wave, the interface does not return to its equilibrium position, the structure of the q-s wave remains imbedded between the two fluids over a long time scale. The damping characteristics of the q-s wave from the time history of the velocity field show overdamped and critically damped response; there is no underdamped oscillation as the flow field approaches steady state. Viscous effects serve as a dissipative mechanism to effectively damp the system. The stability of the four-mode q-s wave is dependent on both a geometric length scale as well as the level of background steady acceleration.

  8. Collaborative Area Monitoring Using Wireless Sensor Networks with Stationary and Mobile Nodes

    Directory of Open Access Journals (Sweden)

    Theofanis P. Lambrou

    2009-01-01

    Full Text Available Monitoring a large area with stationary sensor networks requires a very large number of nodes which with current technology implies a prohibitive cost. The motivation of this work is to develop an architecture where a set of mobile sensors will collaborate with the stationary sensors in order to reliably detect and locate an event. The main idea of this collaborative architecture is that the mobile sensors should sample the areas that are least covered (monitored by the stationary sensors. Furthermore, when stationary sensors have a “suspicion” that an event may have occurred, they report it to a mobile sensor that can move closer to the suspected area and can confirm whether the event has occurred or not. An important component of the proposed architecture is that the mobile nodes autonomously decide their path based on local information (their own beliefs and measurements as well as information collected from the stationary sensors in a neighborhood around them. We believe that this approach is appropriate in the context of wireless sensor networks since it is not feasible to have an accurate global view of the state of the environment.

  9. BioNessie - a grid enabled biochemical networks simulation environment

    OpenAIRE

    Liu, X.; Jiang, J.; Ajayi, O.; Gu, X.; Gilbert, D.; Sinnott, R.O.

    2008-01-01

    The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scale simulations.

  10. Evaluation of the Methods for Response Analysis under Non-Stationary Excitation

    Directory of Open Access Journals (Sweden)

    R.S. Jangid

    1999-01-01

    Full Text Available Response of structures to non-stationary ground motion can be obtained either by the evolutionary spectral analysis or by the Markov approach. In certain conditions, a quasi-stationary analysis can also be performed. The first two methods of analysis are difficult to apply for complex situations such as problems involving soil-structure interaction, non-classical damping and primary-secondary structure interaction. The quasi-stationary analysis, on the other hand, provides an easier solution procedure for such cases. Here-in, the effectiveness of the quasi-stationary analysis is examined with the help of the analysis of a single degree-of-freedom (SDOF system under a set of parametric variations. For this purpose, responses of the SDOF system to uniformly modulated non-stationary random ground excitation are obtained by the three methods and they are compared. In addition, the relative computational efforts for different methods are also investigated.

  11. Analysis of stationary availability factor of two-level backbone computer networks with arbitrary topology

    Science.gov (United States)

    Rahman, P. A.

    2018-05-01

    This scientific paper deals with the two-level backbone computer networks with arbitrary topology. A specialized method, offered by the author for calculation of the stationary availability factor of the two-level backbone computer networks, based on the Markov reliability models for the set of the independent repairable elements with the given failure and repair rates and the methods of the discrete mathematics, is also discussed. A specialized algorithm, offered by the author for analysis of the network connectivity, taking into account different kinds of the network equipment failures, is also observed. Finally, this paper presents an example of calculation of the stationary availability factor for the backbone computer network with the given topology.

  12. 'BioNessie(G) - a grid enabled biochemical networks simulation environment

    OpenAIRE

    Liu, X; Jiang, J; Ajayi, O; Gu, X; Gilbert, D; Sinnott, R

    2008-01-01

    The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scal...

  13. Stationary patterns in star networks of bistable units: Theory and application to chemical reactions.

    Science.gov (United States)

    Kouvaris, Nikos E; Sebek, Michael; Iribarne, Albert; Díaz-Guilera, Albert; Kiss, István Z

    2017-04-01

    We present theoretical and experimental studies on pattern formation with bistable dynamical units coupled in a star network configuration. By applying a localized perturbation to the central or the peripheral elements, we demonstrate the subsequent spreading, pinning, or retraction of the activations; such analysis enables the characterization of the formation of stationary patterns of localized activity. The results are interpreted with a theoretical analysis of a simplified bistable reaction-diffusion model. Weak coupling results in trivial pinned states where the activation cannot propagate. At strong coupling, a uniform state is expected with active or inactive elements at small or large degree networks, respectively. A nontrivial stationary spatial pattern, corresponding to an activation pinning, is predicted to occur at an intermediate number of peripheral elements and at intermediate coupling strengths, where the central activation of the network is pinned, but the peripheral activation propagates toward the center. The results are confirmed in experiments with star networks of bistable electrochemical reactions. The experiments confirm the existence of the stationary spatial patterns and the dependence of coupling strength on the number of peripheral elements for transitions between pinned and retreating or spreading fronts in forced network configurations (where the central or periphery elements are forced to maintain their states).

  14. Conservation Laws in Biochemical Reaction Networks

    DEFF Research Database (Denmark)

    Mahdi, Adam; Ferragut, Antoni; Valls, Claudia

    2017-01-01

    We study the existence of linear and nonlinear conservation laws in biochemical reaction networks with mass-action kinetics. It is straightforward to compute the linear conservation laws as they are related to the left null-space of the stoichiometry matrix. The nonlinear conservation laws...... are difficult to identify and have rarely been considered in the context of mass-action reaction networks. Here, using the Darboux theory of integrability, we provide necessary structural (i.e., parameterindependent) conditions on a reaction network to guarantee the existence of nonlinear conservation laws...

  15. Quasi-projective synchronization of fractional-order complex-valued recurrent neural networks.

    Science.gov (United States)

    Yang, Shuai; Yu, Juan; Hu, Cheng; Jiang, Haijun

    2018-08-01

    In this paper, without separating the complex-valued neural networks into two real-valued systems, the quasi-projective synchronization of fractional-order complex-valued neural networks is investigated. First, two new fractional-order inequalities are established by using the theory of complex functions, Laplace transform and Mittag-Leffler functions, which generalize traditional inequalities with the first-order derivative in the real domain. Additionally, different from hybrid control schemes given in the previous work concerning the projective synchronization, a simple and linear control strategy is designed in this paper and several criteria are derived to ensure quasi-projective synchronization of the complex-valued neural networks with fractional-order based on the established fractional-order inequalities and the theory of complex functions. Moreover, the error bounds of quasi-projective synchronization are estimated. Especially, some conditions are also presented for the Mittag-Leffler synchronization of the addressed neural networks. Finally, some numerical examples with simulations are provided to show the effectiveness of the derived theoretical results. Copyright © 2018 Elsevier Ltd. All rights reserved.

  16. Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks

    DEFF Research Database (Denmark)

    Anderson, David F; Craciun, Gheorghe; Gopalkrishnan, Manoj

    2015-01-01

    We consider the relationship between stationary distributions for stochastic models of reaction systems and Lyapunov functions for their deterministic counterparts. Specifically, we derive the well-known Lyapunov function of reaction network theory as a scaling limit of the non-equilibrium potent...

  17. Quasi-stationary mechanics of elastic continua with bending stiffness wrapping on a pulley system

    Science.gov (United States)

    Kaczmarczyk, S.; Mirhadizadeh, S.

    2016-05-01

    In many engineering applications elastic continua such as ropes and belts often are subject to bending when they pass over pulleys / sheaves. In this paper the quasi-stationary mechanics of a cable-pulley system is studied. The cable is modelled as a moving Euler- Bernoulli beam. The distribution of tension is non-uniform along its span and due to the bending stiffness the contact points at the pulley-beam boundaries are not unknown. The system is described by a set of nonlinear ordinary differential equations with undetermined boundary conditions. The resulting nonlinear Boundary Value Problem (BVP) with unknown boundaries is solved by converting the problem into the ‘standard’ form defined over a fixed interval. Numerical results obtained for a range of typical configurations with relevant boundary conditions applied demonstrate that due to the effects of bending stiffness the angels of wrap are reduced and the span tensions are increased.

  18. Scaling law of resistance fluctuations in stationary random resistor networks

    Science.gov (United States)

    Pennetta; Trefan; Reggiani

    2000-12-11

    In a random resistor network we consider the simultaneous evolution of two competing random processes consisting in breaking and recovering the elementary resistors with probabilities W(D) and W(R). The condition W(R)>W(D)/(1+W(D)) leads to a stationary state, while in the opposite case, the broken resistor fraction reaches the percolation threshold p(c). We study the resistance noise of this system under stationary conditions by Monte Carlo simulations. The variance of resistance fluctuations is found to follow a scaling law |p-p(c)|(-kappa(0)) with kappa(0) = 5.5. The proposed model relates quantitatively the defectiveness of a disordered media with its electrical and excess-noise characteristics.

  19. Parametric sensitivity analysis for biochemical reaction networks based on pathwise information theory.

    Science.gov (United States)

    Pantazis, Yannis; Katsoulakis, Markos A; Vlachos, Dionisios G

    2013-10-22

    questions on parameter identifiability, estimation and robustness. The proposed method is tested and validated on three biochemical systems, namely: (a) a protein production/degradation model where explicit solutions are available, permitting a careful assessment of the method, (b) the p53 reaction network where quasi-steady stochastic oscillations of the concentrations are observed, and for which continuum approximations (e.g. mean field, stochastic Langevin, etc.) break down due to persistent oscillations between high and low populations, and (c) an Epidermal Growth Factor Receptor model which is an example of a high-dimensional stochastic reaction network with more than 200 reactions and a corresponding number of parameters.

  20. Reactor Network Synthesis Using Coupled Genetic Algorithm with the Quasi-linear Programming Method

    OpenAIRE

    Soltani, H.; Shafiei, S.; Edraki, J.

    2016-01-01

    This research is an attempt to develop a new procedure for the synthesis of reactor networks (RNs) using a genetic algorithm (GA) coupled with the quasi-linear programming (LP) method. The GA is used to produce structural configuration, whereas continuous variables are handled using a quasi-LP formulation for finding the best objective function. Quasi-LP consists of LP together with a search loop to find the best reactor conversions (xi), as well as split and recycle ratios (yi). Quasi-LP rep...

  1. An efficient method for evaluation of post-dynamic quasi-stationary states during the island operation of power system parts

    Energy Technology Data Exchange (ETDEWEB)

    Popovic, D P; Mijailovic, S V [Nikola Tesla Inst., Belgrade (Yugoslavia)

    1995-11-01

    This paper presents the development and practical examples of an efficient method for the simultaneous solution of post-dynamic quasi-stationary states in each of the islands, using a unique numerical procedure, retaining the same node numeration which existed in the power system before its disintegration. At the same time, the developed method enables a simple incorporation of the effects of primary frequency and voltage control, emergency control devices and a series of possible dispatch actions, both during the monitoring of the disintegration process and during power system restoration with island synchronization, if the necessary conditions are met. 9 refs, 3 figs, 2 tabs

  2. A Model for Solving the Maxwell Quasi Stationary Equations in a 3-Phase Electric Reduction Furnace

    Directory of Open Access Journals (Sweden)

    S. Ekrann

    1982-10-01

    Full Text Available A computer code has been developed for the approximate computation of electric and magnetic fields within an electric reduction furnace. The paper describes the numerical methods used to solve Maxwell's quasi-stationary equations, which are the governing equations for this problem. The equations are discretized by a staggered grid finite difference technique. The resulting algebraic equations are solved by iterating between computations of electric and magnetic quantities. This 'outer' iteration converges only when the skin depth is larger or of about the same magnitude as the linear dimensions of the computational domain. In solving for electric quantities with magnetic quantities being regarded as known, and vice versa, the central computational task is the solution of a Poisson equation for a scalar potential. These equations are solved by line successive overrelaxation combined with a rebalancing technique.

  3. Localization of an Underwater Control Network Based on Quasi-Stable Adjustment

    Science.gov (United States)

    Chen, Xinhua; Zhang, Hongmei; Feng, Jie

    2018-01-01

    There exists a common problem in the localization of underwater control networks that the precision of the absolute coordinates of known points obtained by marine absolute measurement is poor, and it seriously affects the precision of the whole network in traditional constraint adjustment. Therefore, considering that the precision of underwater baselines is good, we use it to carry out quasi-stable adjustment to amend known points before constraint adjustment so that the points fit the network shape better. In addition, we add unconstrained adjustment for quality control of underwater baselines, the observations of quasi-stable adjustment and constrained adjustment, to eliminate the unqualified baselines and improve the results’ accuracy of the two adjustments. Finally, the modified method is applied to a practical LBL (Long Baseline) experiment and obtains a mean point location precision of 0.08 m, which improves by 38% compared with the traditional method. PMID:29570627

  4. Stochastic model and method of zoning water networks

    OpenAIRE

    Тевяшев, Андрей Дмитриевич; Матвиенко, Ольга Ивановна

    2014-01-01

    Water consumption at different time of the day is uneven. The model of steady flow distribution in water-supply networks is calculated for maximum consumption and effectively used in the network design and reconstruction. Quasi-stationary modes, in which the parameters are random variables and vary relative to their mean values are more suitable for operational management and planning of rational network operation modes.Leaks, which sometimes exceed 50 % of the volume of water supplied, are o...

  5. Expansions of general stationary stochastic optical fields: general formalism

    International Nuclear Information System (INIS)

    Martinez-Herrero, R.; Mejias, P.M.

    1985-01-01

    A new expansion of a general stationary stochastic optical field is derived. Each term of the series is seen to represent a recently defined new class of optical fields, the so-called spectrally quasi-factorizable fields. Alternative expansion in terms of nonstationary fields that obey the wave equation is also shown. A relationship between temporal and spatial features of stationary free optical fields is discussed

  6. Validation of artificial neural network models for predicting biochemical markers associated with male infertility.

    Science.gov (United States)

    Vickram, A S; Kamini, A Rao; Das, Raja; Pathy, M Ramesh; Parameswari, R; Archana, K; Sridharan, T B

    2016-08-01

    Seminal fluid is the secretion from many glands comprised of several organic and inorganic compounds including free amino acids, proteins, fructose, glucosidase, zinc, and other scavenging elements like Mg(2+), Ca(2+), K(+), and Na(+). Therefore, in the view of development of novel approaches and proper diagnosis to male infertility, overall understanding of the biochemical and molecular composition and its role in regulation of sperm quality is highly desirable. Perhaps this can be achieved through artificial intelligence. This study was aimed to elucidate and predict various biochemical markers present in human seminal plasma with three different neural network models. A total of 177 semen samples were collected for this research (both fertile and infertile samples) and immediately processed to prepare a semen analysis report, based on the protocol of the World Health Organization (WHO [2010]). The semen samples were then categorized into oligoasthenospermia (n=35), asthenospermia (n=35), azoospermia (n=22), normospermia (n=34), oligospermia (n=34), and control (n=17). The major biochemical parameters like total protein content, fructose, glucosidase, and zinc content were elucidated by standard protocols. All the biochemical markers were predicted by using three different artificial neural network (ANN) models with semen parameters as inputs. Of the three models, the back propagation neural network model (BPNN) yielded the best results with mean absolute error 0.025, -0.080, 0.166, and -0.057 for protein, fructose, glucosidase, and zinc, respectively. This suggests that BPNN can be used to predict biochemical parameters for the proper diagnosis of male infertility in assisted reproductive technology (ART) centres. AAS: absorption spectroscopy; AI: artificial intelligence; ANN: artificial neural networks; ART: assisted reproductive technology; BPNN: back propagation neural network model; DT: decision tress; MLP: multilayer perceptron; PESA: percutaneous

  7. A probabilistic approach to identify putative drug targets in biochemical networks.

    NARCIS (Netherlands)

    Murabito, E.; Smalbone, K.; Swinton, J.; Westerhoff, H.V.; Steuer, R.

    2011-01-01

    Network-based drug design holds great promise in clinical research as a way to overcome the limitations of traditional approaches in the development of drugs with high efficacy and low toxicity. This novel strategy aims to study how a biochemical network as a whole, rather than its individual

  8. Radio-Oxidation in Polyolefins: Non-Stationary Kinetic Conditions

    International Nuclear Information System (INIS)

    Dely, N.

    2006-01-01

    In the last fifty years, many authors have been interested in the radio-oxidation processes occurring in polymers. The polymer degradation under ionising radiations in presence of dioxygen is well described by a radical chemistry. The radio-oxidation process occurs in three steps: the first one is the production of radicals P degree by interaction between the polymer and the ionising radiations; then radicals P degree react spontaneously with O 2 solved in the polymer giving a peroxy radical POO degree which attacks the polymer forming a hydroperoxide POOH and a new radical P degree (propagation). The third step corresponds to the termination step, that is bimolecular reactions between radicals. It is generally assumed that the stationary state is rapidly reached and consequently that the oxidation induced during the built-up period of the radical concentration can be neglected. However, to our best knowledge, the temporal evolution of radical concentrations before reaching the steady state regime has never been studied in details. We recently performed a complete study of oxygen consumption under electron irradiation for an EPDM elastomer. An analysis, as function of dose rate and oxygen pressure, and assuming steady state conditions, allowed extracting all the kinetic constants. Starting for these experimental data, we calculated the build-up of the radical concentration by solving numerically the differential equations with help of the Minichem code. We conclude that, in fact, the oxidation induced during the built-up period is negligible. In this paper we show that [P degree] could present a quasi-stationary plateau before reaching its stationary level. Consequently, the full radical time evolution is essentially determined by two characteristic times for reaching the quasi and stationary levels and three concentrations: [P degree] and [POO degree] at the stationary level and [P degree] at the quasi-stationary plateau. We show that realistic approximations can

  9. A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks.

    Science.gov (United States)

    Fleming, R M T; Maes, C M; Saunders, M A; Ye, Y; Palsson, B Ø

    2012-01-07

    We derive a convex optimization problem on a steady-state nonequilibrium network of biochemical reactions, with the property that energy conservation and the second law of thermodynamics both hold at the problem solution. This suggests a new variational principle for biochemical networks that can be implemented in a computationally tractable manner. We derive the Lagrange dual of the optimization problem and use strong duality to demonstrate that a biochemical analogue of Tellegen's theorem holds at optimality. Each optimal flux is dependent on a free parameter that we relate to an elementary kinetic parameter when mass action kinetics is assumed. Copyright © 2011 Elsevier Ltd. All rights reserved.

  10. Dynamics of the Bose-Einstein condensate: quasi-one-dimension and beyond

    International Nuclear Information System (INIS)

    Carr, Lincoln D.; Leung, Mary Ann; Mills College, Oakland, CA 94613-1301; Reinhardt, William P.; Department of Chemistry, University of Washington, Seattle, WA 98195-1700

    2000-01-01

    It is shown that the quasi-one-dimensional Bose-Einstein condensate is experimentally accessible and rich in intriguing phenomena. We demonstrate numerically and analytically the existence, stability and perturbation-induced dynamics of all types of stationary states of the quasi-one-dimensional nonlinear Schroedinger equation for both repulsive and attractive cases. Among our results are: the connection between stationary states and solitons; creation of vortices from such states; manipulation of such states with simple phase profiles; demonstration of the fragility of the condensate phase in response to shock; and a robust stabilization of the attractive Bose-Einstein condensate. (author)

  11. Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory

    Directory of Open Access Journals (Sweden)

    Qian Hong

    2008-05-01

    Full Text Available Abstract Background: Several approaches, including metabolic control analysis (MCA, flux balance analysis (FBA, correlation metric construction (CMC, and biochemical circuit theory (BCT, have been developed for the quantitative analysis of complex biochemical networks. Here, we present a comprehensive theory of linear analysis for nonequilibrium steady-state (NESS biochemical reaction networks that unites these disparate approaches in a common mathematical framework and thermodynamic basis. Results: In this theory a number of relationships between key matrices are introduced: the matrix A obtained in the standard, linear-dynamic-stability analysis of the steady-state can be decomposed as A = SRT where R and S are directly related to the elasticity-coefficient matrix for the fluxes and chemical potentials in MCA, respectively; the control-coefficients for the fluxes and chemical potentials can be written in terms of RT BS and ST BS respectively where matrix B is the inverse of A; the matrix S is precisely the stoichiometric matrix in FBA; and the matrix eAt plays a central role in CMC. Conclusion: One key finding that emerges from this analysis is that the well-known summation theorems in MCA take different forms depending on whether metabolic steady-state is maintained by flux injection or concentration clamping. We demonstrate that if rate-limiting steps exist in a biochemical pathway, they are the steps with smallest biochemical conductances and largest flux control-coefficients. We hypothesize that biochemical networks for cellular signaling have a different strategy for minimizing energy waste and being efficient than do biochemical networks for biosynthesis. We also discuss the intimate relationship between MCA and biochemical systems analysis (BSA.

  12. The alterations in biochemical signaling of hippocampal network activity in the autism brain The alterations in biochemical signaling of hippocampal network activity in the autism brain The alterations in biochemical signaling of hippocampal network activity in the autism brain

    Institute of Scientific and Technical Information of China (English)

    田允; 黄继云; 王锐; 陶蓉蓉; 卢应梅; 廖美华; 陆楠楠; 李静; 芦博; 韩峰

    2012-01-01

    Autism is a highly heritable neurodevelopmental condition characterized by impaired social interaction and communication. However, the role of synaptic dysfunction during development of autism remains unclear. In the present study, we address the alterations of biochemical signaling in hippocampal network following induction of the autism in experimental animals. Here, the an- imal disease model and DNA array being used to investigate the differences in transcriptome or- ganization between autistic and normal brain by gene co--expression network analysis.

  13. Scalable rule-based modelling of allosteric proteins and biochemical networks.

    Directory of Open Access Journals (Sweden)

    Julien F Ollivier

    2010-11-01

    Full Text Available Much of the complexity of biochemical networks comes from the information-processing abilities of allosteric proteins, be they receptors, ion-channels, signalling molecules or transcription factors. An allosteric protein can be uniquely regulated by each combination of input molecules that it binds. This "regulatory complexity" causes a combinatorial increase in the number of parameters required to fit experimental data as the number of protein interactions increases. It therefore challenges the creation, updating, and re-use of biochemical models. Here, we propose a rule-based modelling framework that exploits the intrinsic modularity of protein structure to address regulatory complexity. Rather than treating proteins as "black boxes", we model their hierarchical structure and, as conformational changes, internal dynamics. By modelling the regulation of allosteric proteins through these conformational changes, we often decrease the number of parameters required to fit data, and so reduce over-fitting and improve the predictive power of a model. Our method is thermodynamically grounded, imposes detailed balance, and also includes molecular cross-talk and the background activity of enzymes. We use our Allosteric Network Compiler to examine how allostery can facilitate macromolecular assembly and how competitive ligands can change the observed cooperativity of an allosteric protein. We also develop a parsimonious model of G protein-coupled receptors that explains functional selectivity and can predict the rank order of potency of agonists acting through a receptor. Our methodology should provide a basis for scalable, modular and executable modelling of biochemical networks in systems and synthetic biology.

  14. Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation.

    Directory of Open Access Journals (Sweden)

    Andrea Ciliberto

    2007-03-01

    Full Text Available In metabolic networks, metabolites are usually present in great excess over the enzymes that catalyze their interconversion, and describing the rates of these reactions by using the Michaelis-Menten rate law is perfectly valid. This rate law assumes that the concentration of enzyme-substrate complex (C is much less than the free substrate concentration (S0. However, in protein interaction networks, the enzymes and substrates are all proteins in comparable concentrations, and neglecting C with respect to S0 is not valid. Borghans, DeBoer, and Segel developed an alternative description of enzyme kinetics that is valid when C is comparable to S0. We extend this description, which Borghans et al. call the total quasi-steady state approximation, to networks of coupled enzymatic reactions. First, we analyze an isolated Goldbeter-Koshland switch when enzymes and substrates are present in comparable concentrations. Then, on the basis of a real example of the molecular network governing cell cycle progression, we couple two and three Goldbeter-Koshland switches together to study the effects of feedback in networks of protein kinases and phosphatases. Our analysis shows that the total quasi-steady state approximation provides an excellent kinetic formalism for protein interaction networks, because (1 it unveils the modular structure of the enzymatic reactions, (2 it suggests a simple algorithm to formulate correct kinetic equations, and (3 contrary to classical Michaelis-Menten kinetics, it succeeds in faithfully reproducing the dynamics of the network both qualitatively and quantitatively.

  15. Communication: Limitations of the stochastic quasi-steady-state approximation in open biochemical reaction networks

    Science.gov (United States)

    Thomas, Philipp; Straube, Arthur V.; Grima, Ramon

    2011-11-01

    It is commonly believed that, whenever timescale separation holds, the predictions of reduced chemical master equations obtained using the stochastic quasi-steady-state approximation are in very good agreement with the predictions of the full master equations. We use the linear noise approximation to obtain a simple formula for the relative error between the predictions of the two master equations for the Michaelis-Menten reaction with substrate input. The reduced approach is predicted to overestimate the variance of the substrate concentration fluctuations by as much as 30%. The theoretical results are validated by stochastic simulations using experimental parameter values for enzymes involved in proteolysis, gluconeogenesis, and fermentation.

  16. Efficient Parallel Statistical Model Checking of Biochemical Networks

    Directory of Open Access Journals (Sweden)

    Paolo Ballarini

    2009-12-01

    Full Text Available We consider the problem of verifying stochastic models of biochemical networks against behavioral properties expressed in temporal logic terms. Exact probabilistic verification approaches such as, for example, CSL/PCTL model checking, are undermined by a huge computational demand which rule them out for most real case studies. Less demanding approaches, such as statistical model checking, estimate the likelihood that a property is satisfied by sampling executions out of the stochastic model. We propose a methodology for efficiently estimating the likelihood that a LTL property P holds of a stochastic model of a biochemical network. As with other statistical verification techniques, the methodology we propose uses a stochastic simulation algorithm for generating execution samples, however there are three key aspects that improve the efficiency: first, the sample generation is driven by on-the-fly verification of P which results in optimal overall simulation time. Second, the confidence interval estimation for the probability of P to hold is based on an efficient variant of the Wilson method which ensures a faster convergence. Third, the whole methodology is designed according to a parallel fashion and a prototype software tool has been implemented that performs the sampling/verification process in parallel over an HPC architecture.

  17. A non-Boltzmannian behavior of the energy distribution for quasi-stationary regimes of the Fermi–Pasta–Ulam β system

    Energy Technology Data Exchange (ETDEWEB)

    Leo, Mario, E-mail: mario.leo@le.infn.it [Dipartimento di Matematica e Fisica “Ennio De Giorgi”, Università del Salento, Via per Arnesano, 73100–Lecce (Italy); Leo, Rosario Antonio, E-mail: leora@le.infn.it [Dipartimento di Matematica e Fisica “Ennio De Giorgi”, Università del Salento, Via per Arnesano, 73100–Lecce (Italy); Tempesta, Piergiulio, E-mail: p.tempesta@fis.ucm.es [Departamento de Física Teórica II (Métodos matemáticos de la Física), Facultad de Físicas, Ciudad Universitaria, Universidad Complutense de Madrid, 28040–Madrid (Spain)

    2013-06-15

    In a recent paper [M. Leo, R.A. Leo, P. Tempesta, C. Tsallis, Phys. Rev. E 85 (2012) 031149], the existence of quasi-stationary states for the Fermi–Pasta–Ulam β system has been shown numerically, by analyzing the stability properties of the N/4-mode exact nonlinear solution. Here we study the energy distribution of the modes N/4, N/3 and N/2, when they are unstable, as a function of N and of the initial excitation energy. We observe that the classical Boltzmann weight is replaced by a different weight, expressed by a q-exponential function. -- Highlights: ► New statistical properties of the Fermi–Pasta–Ulam beta system are found. ► The energy distribution of specific observables are studied: a deviation from the standard Boltzmann behavior is found. ► A q-exponential weight should be used instead. ► The classical exponential weight is restored in the large particle limit (mesoscopic nature of the phenomenon)

  18. Structuring evolution: biochemical networks and metabolic diversification in birds.

    Science.gov (United States)

    Morrison, Erin S; Badyaev, Alexander V

    2016-08-25

    Recurrence and predictability of evolution are thought to reflect the correspondence between genomic and phenotypic dimensions of organisms, and the connectivity in deterministic networks within these dimensions. Direct examination of the correspondence between opportunities for diversification imbedded in such networks and realized diversity is illuminating, but is empirically challenging because both the deterministic networks and phenotypic diversity are modified in the course of evolution. Here we overcome this problem by directly comparing the structure of a "global" carotenoid network - comprising of all known enzymatic reactions among naturally occurring carotenoids - with the patterns of evolutionary diversification in carotenoid-producing metabolic networks utilized by birds. We found that phenotypic diversification in carotenoid networks across 250 species was closely associated with enzymatic connectivity of the underlying biochemical network - compounds with greater connectivity occurred the most frequently across species and were the hotspots of metabolic pathway diversification. In contrast, we found no evidence for diversification along the metabolic pathways, corroborating findings that the utilization of the global carotenoid network was not strongly influenced by history in avian evolution. The finding that the diversification in species-specific carotenoid networks is qualitatively predictable from the connectivity of the underlying enzymatic network points to significant structural determinism in phenotypic evolution.

  19. Stationary nonimaging lenses for solar concentration.

    Science.gov (United States)

    Kotsidas, Panagiotis; Chatzi, Eleni; Modi, Vijay

    2010-09-20

    A novel approach for the design of refractive lenses is presented, where the lens is mounted on a stationary aperture and the Sun is tracked by a moving solar cell. The purpose of this work is to design a quasi-stationary concentrator by replacing the two-axis tracking of the Sun with internal motion of the miniaturized solar cell inside the module. Families of lenses are designed with a variation of the simultaneous multiple surface technique in which the sawtooth genetic algorithm is implemented to optimize the geometric variables of the optic in order to produce high fluxes for a range of incidence angles. Finally, we show examples of the technique for lenses with 60° and 30° acceptance half-angles, with low to medium attainable concentrations.

  20. Extinction and quasi-stationarity in the stochastic logistic SIS model

    CERN Document Server

    Nåsell, Ingemar

    2011-01-01

    This volume presents explicit approximations of the quasi-stationary distribution and of the expected time to extinction from the state one and from quasi-stationarity for the stochastic logistic SIS model. The approximations are derived separately in three different parameter regions, and then combined into a uniform approximation across all three regions. Subsequently, the results are used to derive thresholds as functions of the population size N.

  1. Automated analysis of information processing, kinetic independence and modular architecture in biochemical networks using MIDIA.

    Science.gov (United States)

    Bowsher, Clive G

    2011-02-15

    Understanding the encoding and propagation of information by biochemical reaction networks and the relationship of such information processing properties to modular network structure is of fundamental importance in the study of cell signalling and regulation. However, a rigorous, automated approach for general biochemical networks has not been available, and high-throughput analysis has therefore been out of reach. Modularization Identification by Dynamic Independence Algorithms (MIDIA) is a user-friendly, extensible R package that performs automated analysis of how information is processed by biochemical networks. An important component is the algorithm's ability to identify exact network decompositions based on both the mass action kinetics and informational properties of the network. These modularizations are visualized using a tree structure from which important dynamic conditional independence properties can be directly read. Only partial stoichiometric information needs to be used as input to MIDIA, and neither simulations nor knowledge of rate parameters are required. When applied to a signalling network, for example, the method identifies the routes and species involved in the sequential propagation of information between its multiple inputs and outputs. These routes correspond to the relevant paths in the tree structure and may be further visualized using the Input-Output Path Matrix tool. MIDIA remains computationally feasible for the largest network reconstructions currently available and is straightforward to use with models written in Systems Biology Markup Language (SBML). The package is distributed under the GNU General Public License and is available, together with a link to browsable Supplementary Material, at http://code.google.com/p/midia. Further information is at www.maths.bris.ac.uk/~macgb/Software.html.

  2. Least-squares methods for identifying biochemical regulatory networks from noisy measurements

    Directory of Open Access Journals (Sweden)

    Heslop-Harrison Pat

    2007-01-01

    Full Text Available Abstract Background We consider the problem of identifying the dynamic interactions in biochemical networks from noisy experimental data. Typically, approaches for solving this problem make use of an estimation algorithm such as the well-known linear Least-Squares (LS estimation technique. We demonstrate that when time-series measurements are corrupted by white noise and/or drift noise, more accurate and reliable identification of network interactions can be achieved by employing an estimation algorithm known as Constrained Total Least Squares (CTLS. The Total Least Squares (TLS technique is a generalised least squares method to solve an overdetermined set of equations whose coefficients are noisy. The CTLS is a natural extension of TLS to the case where the noise components of the coefficients are correlated, as is usually the case with time-series measurements of concentrations and expression profiles in gene networks. Results The superior performance of the CTLS method in identifying network interactions is demonstrated on three examples: a genetic network containing four genes, a network describing p53 activity and mdm2 messenger RNA interactions, and a recently proposed kinetic model for interleukin (IL-6 and (IL-12b messenger RNA expression as a function of ATF3 and NF-κB promoter binding. For the first example, the CTLS significantly reduces the errors in the estimation of the Jacobian for the gene network. For the second, the CTLS reduces the errors from the measurements that are corrupted by white noise and the effect of neglected kinetics. For the third, it allows the correct identification, from noisy data, of the negative regulation of (IL-6 and (IL-12b by ATF3. Conclusion The significant improvements in performance demonstrated by the CTLS method under the wide range of conditions tested here, including different levels and types of measurement noise and different numbers of data points, suggests that its application will enable

  3. Emergence of switch-like behavior in a large family of simple biochemical networks.

    Directory of Open Access Journals (Sweden)

    Dan Siegal-Gaskins

    2011-05-01

    Full Text Available Bistability plays a central role in the gene regulatory networks (GRNs controlling many essential biological functions, including cellular differentiation and cell cycle control. However, establishing the network topologies that can exhibit bistability remains a challenge, in part due to the exceedingly large variety of GRNs that exist for even a small number of components. We begin to address this problem by employing chemical reaction network theory in a comprehensive in silico survey to determine the capacity for bistability of more than 40,000 simple networks that can be formed by two transcription factor-coding genes and their associated proteins (assuming only the most elementary biochemical processes. We find that there exist reaction rate constants leading to bistability in ∼90% of these GRN models, including several circuits that do not contain any of the TF cooperativity commonly associated with bistable systems, and the majority of which could only be identified as bistable through an original subnetwork-based analysis. A topological sorting of the two-gene family of networks based on the presence or absence of biochemical reactions reveals eleven minimal bistable networks (i.e., bistable networks that do not contain within them a smaller bistable subnetwork. The large number of previously unknown bistable network topologies suggests that the capacity for switch-like behavior in GRNs arises with relative ease and is not easily lost through network evolution. To highlight the relevance of the systematic application of CRNT to bistable network identification in real biological systems, we integrated publicly available protein-protein interaction, protein-DNA interaction, and gene expression data from Saccharomyces cerevisiae, and identified several GRNs predicted to behave in a bistable fashion.

  4. Coarse-graining stochastic biochemical networks: adiabaticity and fast simulations

    Energy Technology Data Exchange (ETDEWEB)

    Nemenman, Ilya [Los Alamos National Laboratory; Sinitsyn, Nikolai [Los Alamos National Laboratory; Hengartner, Nick [Los Alamos National Laboratory

    2008-01-01

    We propose a universal approach for analysis and fast simulations of stiff stochastic biochemical kinetics networks, which rests on elimination of fast chemical species without a loss of information about mesoscoplc, non-Poissonian fluctuations of the slow ones. Our approach, which is similar to the Born-Oppenhelmer approximation in quantum mechanics, follows from the stochastic path Integral representation of the cumulant generating function of reaction events. In applications with a small number of chemIcal reactions, It produces analytical expressions for cumulants of chemical fluxes between the slow variables. This allows for a low-dimensional, Interpretable representation and can be used for coarse-grained numerical simulation schemes with a small computational complexity and yet high accuracy. As an example, we derive the coarse-grained description for a chain of biochemical reactions, and show that the coarse-grained and the microscopic simulations are in an agreement, but the coarse-gralned simulations are three orders of magnitude faster.

  5. Modularization of biochemical networks based on classification of Petri net t-invariants.

    Science.gov (United States)

    Grafahrend-Belau, Eva; Schreiber, Falk; Heiner, Monika; Sackmann, Andrea; Junker, Björn H; Grunwald, Stefanie; Speer, Astrid; Winder, Katja; Koch, Ina

    2008-02-08

    Structural analysis of biochemical networks is a growing field in bioinformatics and systems biology. The availability of an increasing amount of biological data from molecular biological networks promises a deeper understanding but confronts researchers with the problem of combinatorial explosion. The amount of qualitative network data is growing much faster than the amount of quantitative data, such as enzyme kinetics. In many cases it is even impossible to measure quantitative data because of limitations of experimental methods, or for ethical reasons. Thus, a huge amount of qualitative data, such as interaction data, is available, but it was not sufficiently used for modeling purposes, until now. New approaches have been developed, but the complexity of data often limits the application of many of the methods. Biochemical Petri nets make it possible to explore static and dynamic qualitative system properties. One Petri net approach is model validation based on the computation of the system's invariant properties, focusing on t-invariants. T-invariants correspond to subnetworks, which describe the basic system behavior.With increasing system complexity, the basic behavior can only be expressed by a huge number of t-invariants. According to our validation criteria for biochemical Petri nets, the necessary verification of the biological meaning, by interpreting each subnetwork (t-invariant) manually, is not possible anymore. Thus, an automated, biologically meaningful classification would be helpful in analyzing t-invariants, and supporting the understanding of the basic behavior of the considered biological system. Here, we introduce a new approach to automatically classify t-invariants to cope with network complexity. We apply clustering techniques such as UPGMA, Complete Linkage, Single Linkage, and Neighbor Joining in combination with different distance measures to get biologically meaningful clusters (t-clusters), which can be interpreted as modules. To find

  6. Modularization of biochemical networks based on classification of Petri net t-invariants

    Directory of Open Access Journals (Sweden)

    Grunwald Stefanie

    2008-02-01

    Full Text Available Abstract Background Structural analysis of biochemical networks is a growing field in bioinformatics and systems biology. The availability of an increasing amount of biological data from molecular biological networks promises a deeper understanding but confronts researchers with the problem of combinatorial explosion. The amount of qualitative network data is growing much faster than the amount of quantitative data, such as enzyme kinetics. In many cases it is even impossible to measure quantitative data because of limitations of experimental methods, or for ethical reasons. Thus, a huge amount of qualitative data, such as interaction data, is available, but it was not sufficiently used for modeling purposes, until now. New approaches have been developed, but the complexity of data often limits the application of many of the methods. Biochemical Petri nets make it possible to explore static and dynamic qualitative system properties. One Petri net approach is model validation based on the computation of the system's invariant properties, focusing on t-invariants. T-invariants correspond to subnetworks, which describe the basic system behavior. With increasing system complexity, the basic behavior can only be expressed by a huge number of t-invariants. According to our validation criteria for biochemical Petri nets, the necessary verification of the biological meaning, by interpreting each subnetwork (t-invariant manually, is not possible anymore. Thus, an automated, biologically meaningful classification would be helpful in analyzing t-invariants, and supporting the understanding of the basic behavior of the considered biological system. Methods Here, we introduce a new approach to automatically classify t-invariants to cope with network complexity. We apply clustering techniques such as UPGMA, Complete Linkage, Single Linkage, and Neighbor Joining in combination with different distance measures to get biologically meaningful clusters (t

  7. Biophysical constraints on the computational capacity of biochemical signaling networks

    Science.gov (United States)

    Wang, Ching-Hao; Mehta, Pankaj

    Biophysics fundamentally constrains the computations that cells can carry out. Here, we derive fundamental bounds on the computational capacity of biochemical signaling networks that utilize post-translational modifications (e.g. phosphorylation). To do so, we combine ideas from the statistical physics of disordered systems and the observation by Tony Pawson and others that the biochemistry underlying protein-protein interaction networks is combinatorial and modular. Our results indicate that the computational capacity of signaling networks is severely limited by the energetics of binding and the need to achieve specificity. We relate our results to one of the theoretical pillars of statistical learning theory, Cover's theorem, which places bounds on the computational capacity of perceptrons. PM and CHW were supported by a Simons Investigator in the Mathematical Modeling of Living Systems Grant, and NIH Grant No. 1R35GM119461 (both to PM).

  8. Kinetic features and non-stationary electron trapping in paraxial magnetic nozzles

    Science.gov (United States)

    Sánchez-Arriaga, G.; Zhou, J.; Ahedo, E.; Martínez-Sánchez, M.; Ramos, J. J.

    2018-03-01

    The paraxial expansion of a collisionless plasma jet into vacuum, guided by a magnetic nozzle, is studied with an Eulerian and non-stationary Vlasov-Poisson solver. Parametric analyzes varying the magnetic field expansion rate, the size of the simulation box, and the electrostatic potential fall are presented. After choosing the potential fall leading to a zero net current beam, the steady states of the simulations exhibit a quasi-neutral region followed by a downstream sheath. The latter, an unavoidable consequence of the finite size of the computational domain, does not affect the quasi-neutral region if the box size is chosen appropriately. The steady state presents a strong decay of the perpendicular temperature of the electrons, whose profile versus the inverse of the magnetic field does not depend on the expansion rate within the quasi-neutral region. As a consequence, the electron distribution function is highly anisotropic downstream. The simulations revealed that the ions reach a higher velocity during the transient than in the steady state and their distribution functions are not far from mono-energetic. The density percentage of the population of electrons trapped during the transient, which is computed self-consistently by the code, is up to 25% of the total electron density in the quasi-neutral region. It is demonstrated that the exact amount depends on the history of the system and the steady state is not unique. Nevertheless, the amount of trapped electrons is smaller than the one assumed heuristically by kinetic stationary theories.

  9. Sustaining a Global Social Network: a quasi-experimental study.

    Science.gov (United States)

    Benton, D C; Ferguson, S L

    2017-03-01

    To examine the longer term impact on the social network of participating nurses in the Global Nursing Leadership Institute (GNLI2013) through using differing frequencies of follow-up to assess impact on maintenance of network cohesion. Social network analysis is increasingly been used by nurse researchers, however, studies tend to use single point-in-time descriptive methods. This study utilizes a repeated measures, block group, control-intervention, quasi-experimental design. Twenty-eight nurse leaders, competitively selected through a double-blind peer review process, were allocated to five action learning-based learning groups. Network architecture, measures of cohesion and node degree frequency were all used to assess programme impact. The programme initiated and sustained connections between nurse leaders drawn from a geographically dispersed heterogeneous group. Modest inputs of two to three e-mails over a 6-month period seem sufficient to maintain connectivity as indicated by measures of network density, diameter and path length. Due to the teaching methodology used, the study sample was relatively small and the follow-up data collection took place after a relatively short time. Replication and further cohort data collection would be advantageous. In an era where many policy solutions are being debated and initiated at the global level, action learning leadership development that utilizes new technology follow-up appears to show significant impact and is worthy of wider application. The approach warrants further inquiry and testing as to its longer term effects on nursing's influence on policy formulation and implementation. © 2016 International Council of Nurses.

  10. Fibre optical measuring network based on quasi-distributed amplitude sensors for detecting deformation loads

    International Nuclear Information System (INIS)

    Kul'chin, Yurii N; Kolchinskiy, V A; Kamenev, O T; Petrov, Yu S

    2013-01-01

    A new design of a sensitive element for a fibre optical sensor of deformation loads is proposed. A distributed fibre optical measuring network, aimed at determining both the load application point and the load mass, has been developed based on these elements. It is shown that neural network methods of data processing make it possible to combine quasi-distributed amplitude sensors of different types into a unified network. The results of the experimental study of a breadboard of a fibre optical measuring network are reported, which demonstrate successful reconstruction of the trajectory of a moving object (load) with a spatial resolution of 8 cm, as well as the load mass in the range of 1 – 10 kg with a sensitivity of 0.043 kg -1 . (laser optics 2012)

  11. Non-equilibrium Quasi-Chemical Nucleation Model

    Science.gov (United States)

    Gorbachev, Yuriy E.

    2018-04-01

    Quasi-chemical model, which is widely used for nucleation description, is revised on the basis of recent results in studying of non-equilibrium effects in reacting gas mixtures (Kolesnichenko and Gorbachev in Appl Math Model 34:3778-3790, 2010; Shock Waves 23:635-648, 2013; Shock Waves 27:333-374, 2017). Non-equilibrium effects in chemical reactions are caused by the chemical reactions themselves and therefore these contributions should be taken into account in the corresponding expressions for reaction rates. Corrections to quasi-equilibrium reaction rates are of two types: (a) spatially homogeneous (caused by physical-chemical processes) and (b) spatially inhomogeneous (caused by gas expansion/compression processes and proportional to the velocity divergency). Both of these processes play an important role during the nucleation and are included into the proposed model. The method developed for solving the generalized Boltzmann equation for chemically reactive gases is applied for solving the set of equations of the revised quasi-chemical model. It is shown that non-equilibrium processes lead to essential deviation of the quasi-stationary distribution and therefore the nucleation rate from its traditional form.

  12. On the precision of quasi steady state assumptions in stochastic dynamics

    Science.gov (United States)

    Agarwal, Animesh; Adams, Rhys; Castellani, Gastone C.; Shouval, Harel Z.

    2012-07-01

    Many biochemical networks have complex multidimensional dynamics and there is a long history of methods that have been used for dimensionality reduction for such reaction networks. Usually a deterministic mass action approach is used; however, in small volumes, there are significant fluctuations from the mean which the mass action approach cannot capture. In such cases stochastic simulation methods should be used. In this paper, we evaluate the applicability of one such dimensionality reduction method, the quasi-steady state approximation (QSSA) [L. Menten and M. Michaelis, "Die kinetik der invertinwirkung," Biochem. Z 49, 333369 (1913)] for dimensionality reduction in case of stochastic dynamics. First, the applicability of QSSA approach is evaluated for a canonical system of enzyme reactions. Application of QSSA to such a reaction system in a deterministic setting leads to Michaelis-Menten reduced kinetics which can be used to derive the equilibrium concentrations of the reaction species. In the case of stochastic simulations, however, the steady state is characterized by fluctuations around the mean equilibrium concentration. Our analysis shows that a QSSA based approach for dimensionality reduction captures well the mean of the distribution as obtained from a full dimensional simulation but fails to accurately capture the distribution around that mean. Moreover, the QSSA approximation is not unique. We have then extended the analysis to a simple bistable biochemical network model proposed to account for the stability of synaptic efficacies; the substrate of learning and memory [J. E. Lisman, "A mechanism of memory storage insensitive to molecular turnover: A bistable autophosphorylating kinase," Proc. Natl. Acad. Sci. U.S.A. 82, 3055-3057 (1985)], 10.1073/pnas.82.9.3055. Our analysis shows that a QSSA based dimensionality reduction method results in errors as big as two orders of magnitude in predicting the residence times in the two stable states.

  13. Spectral properties of the tandem Jackson network, seen as a quasi-birth-and-death process

    NARCIS (Netherlands)

    Kroese, D.P.; Scheinhardt, W.R.W.; Taylor, P.G.

    2004-01-01

    Quasi-birth-and-death (QBD) processes with infinite “phase spaces" can exhibit unusual and interesting behavior. One of the simplest examples of such a process is the two-node tandem Jackson network, with the “phase" giving the state of the first queue and the “level" giving the state of the second

  14. Self-organising mixture autoregressive model for non-stationary time series modelling.

    Science.gov (United States)

    Ni, He; Yin, Hujun

    2008-12-01

    Modelling non-stationary time series has been a difficult task for both parametric and nonparametric methods. One promising solution is to combine the flexibility of nonparametric models with the simplicity of parametric models. In this paper, the self-organising mixture autoregressive (SOMAR) network is adopted as a such mixture model. It breaks time series into underlying segments and at the same time fits local linear regressive models to the clusters of segments. In such a way, a global non-stationary time series is represented by a dynamic set of local linear regressive models. Neural gas is used for a more flexible structure of the mixture model. Furthermore, a new similarity measure has been introduced in the self-organising network to better quantify the similarity of time series segments. The network can be used naturally in modelling and forecasting non-stationary time series. Experiments on artificial, benchmark time series (e.g. Mackey-Glass) and real-world data (e.g. numbers of sunspots and Forex rates) are presented and the results show that the proposed SOMAR network is effective and superior to other similar approaches.

  15. Geometric ergodicity and quasi-stationarity in discrete-time birth-death processes

    NARCIS (Netherlands)

    van Doorn, Erik A.; Schrijner, Pauline

    1995-01-01

    We study two aspects of discrete-time birth-death processes, the common feature of which is the central role played by the decay parameter of the process. First, conditions for geometric ergodicity and bounds for the decay parameter are obtained. Then the existence and structure of quasi-stationary

  16. The C-terminal domains of NF-H and NF-M subunits maintain axonal neurofilament content by blocking turnover of the stationary neurofilament network.

    Directory of Open Access Journals (Sweden)

    Mala V Rao

    Full Text Available Newly synthesized neurofilaments or protofilaments are incorporated into a highly stable stationary cytoskeleton network as they are transported along axons. Although the heavily phosphorylated carboxyl-terminal tail domains of the heavy and medium neurofilament (NF subunits have been proposed to contribute to this process and particularly to stability of this structure, their function is still obscure. Here we show in NF-H/M tail deletion [NF-(H/M(tailΔ] mice that the deletion of both of these domains selectively lowers NF levels 3-6 fold along optic axons without altering either rates of subunit synthesis or the rate of slow axonal transport of NF. Pulse labeling studies carried out over 90 days revealed a significantly faster rate of disappearance of NF from the stationary NF network of optic axons in NF-(H/M(tailΔ mice. Faster NF disappearance was accompanied by elevated levels of NF-L proteolytic fragments in NF-(H/M(tailΔ axons. We conclude that NF-H and NF-M C-terminal domains do not normally regulate NF transport rates as previously proposed, but instead increase the proteolytic resistance of NF, thereby stabilizing the stationary neurofilament cytoskeleton along axons.

  17. Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach

    Directory of Open Access Journals (Sweden)

    Oliveira Rui

    2010-09-01

    Full Text Available Abstract Background This paper presents a method for modelling dynamical biochemical networks with intrinsic time delays. Since the fundamental mechanisms leading to such delays are many times unknown, non conventional modelling approaches become necessary. Herein, a hybrid semi-parametric identification methodology is proposed in which discrete time series are incorporated into fundamental material balance models. This integration results in hybrid delay differential equations which can be applied to identify unknown cellular dynamics. Results The proposed hybrid modelling methodology was evaluated using two case studies. The first of these deals with dynamic modelling of transcriptional factor A in mammalian cells. The protein transport from the cytosol to the nucleus introduced a delay that was accounted for by discrete time series formulation. The second case study focused on a simple network with distributed time delays that demonstrated that the discrete time delay formalism has broad applicability to both discrete and distributed delay problems. Conclusions Significantly better prediction qualities of the novel hybrid model were obtained when compared to dynamical structures without time delays, being the more distinctive the more significant the underlying system delay is. The identification of the system delays by studies of different discrete modelling delays was enabled by the proposed structure. Further, it was shown that the hybrid discrete delay methodology is not limited to discrete delay systems. The proposed method is a powerful tool to identify time delays in ill-defined biochemical networks.

  18. Methods for the Quasi-Periodic Variability Analysis in Blazars Y. Liu ...

    Indian Academy of Sciences (India)

    the variability analysis in blazars in optical and radio bands, to search for possible quasi-periodic signals. 2. Power spectral density (PSD). In statistical signal processing and physics, the power spectral density (PSD) is a positive real function of a frequency variable associated with a stationary stochas- tic process. Intuitively ...

  19. CADLIVE toolbox for MATLAB: automatic dynamic modeling of biochemical networks with comprehensive system analysis.

    Science.gov (United States)

    Inoue, Kentaro; Maeda, Kazuhiro; Miyabe, Takaaki; Matsuoka, Yu; Kurata, Hiroyuki

    2014-09-01

    Mathematical modeling has become a standard technique to understand the dynamics of complex biochemical systems. To promote the modeling, we had developed the CADLIVE dynamic simulator that automatically converted a biochemical map into its associated mathematical model, simulated its dynamic behaviors and analyzed its robustness. To enhance the feasibility by CADLIVE and extend its functions, we propose the CADLIVE toolbox available for MATLAB, which implements not only the existing functions of the CADLIVE dynamic simulator, but also the latest tools including global parameter search methods with robustness analysis. The seamless, bottom-up processes consisting of biochemical network construction, automatic construction of its dynamic model, simulation, optimization, and S-system analysis greatly facilitate dynamic modeling, contributing to the research of systems biology and synthetic biology. This application can be freely downloaded from http://www.cadlive.jp/CADLIVE_MATLAB/ together with an instruction.

  20. A moment-convergence method for stochastic analysis of biochemical reaction networks.

    Science.gov (United States)

    Zhang, Jiajun; Nie, Qing; Zhou, Tianshou

    2016-05-21

    Traditional moment-closure methods need to assume that high-order cumulants of a probability distribution approximate to zero. However, this strong assumption is not satisfied for many biochemical reaction networks. Here, we introduce convergent moments (defined in mathematics as the coefficients in the Taylor expansion of the probability-generating function at some point) to overcome this drawback of the moment-closure methods. As such, we develop a new analysis method for stochastic chemical kinetics. This method provides an accurate approximation for the master probability equation (MPE). In particular, the connection between low-order convergent moments and rate constants can be more easily derived in terms of explicit and analytical forms, allowing insights that would be difficult to obtain through direct simulation or manipulation of the MPE. In addition, it provides an accurate and efficient way to compute steady-state or transient probability distribution, avoiding the algorithmic difficulty associated with stiffness of the MPE due to large differences in sizes of rate constants. Applications of the method to several systems reveal nontrivial stochastic mechanisms of gene expression dynamics, e.g., intrinsic fluctuations can induce transient bimodality and amplify transient signals, and slow switching between promoter states can increase fluctuations in spatially heterogeneous signals. The overall approach has broad applications in modeling, analysis, and computation of complex biochemical networks with intrinsic noise.

  1. A moment-convergence method for stochastic analysis of biochemical reaction networks

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Jiajun [School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275 (China); Nie, Qing [Department of Mathematics, University of California at Irvine, Irvine, California 92697 (United States); Zhou, Tianshou, E-mail: mcszhtsh@mail.sysu.edu.cn [School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275 (China); Guangdong Province Key Laboratory of Computational Science and School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275 (China)

    2016-05-21

    Traditional moment-closure methods need to assume that high-order cumulants of a probability distribution approximate to zero. However, this strong assumption is not satisfied for many biochemical reaction networks. Here, we introduce convergent moments (defined in mathematics as the coefficients in the Taylor expansion of the probability-generating function at some point) to overcome this drawback of the moment-closure methods. As such, we develop a new analysis method for stochastic chemical kinetics. This method provides an accurate approximation for the master probability equation (MPE). In particular, the connection between low-order convergent moments and rate constants can be more easily derived in terms of explicit and analytical forms, allowing insights that would be difficult to obtain through direct simulation or manipulation of the MPE. In addition, it provides an accurate and efficient way to compute steady-state or transient probability distribution, avoiding the algorithmic difficulty associated with stiffness of the MPE due to large differences in sizes of rate constants. Applications of the method to several systems reveal nontrivial stochastic mechanisms of gene expression dynamics, e.g., intrinsic fluctuations can induce transient bimodality and amplify transient signals, and slow switching between promoter states can increase fluctuations in spatially heterogeneous signals. The overall approach has broad applications in modeling, analysis, and computation of complex biochemical networks with intrinsic noise.

  2. Systems biology and the origins of life? part II. Are biochemical networks possible ancestors of living systems? networks of catalysed chemical reactions: non-equilibrium, self-organization and evolution.

    Science.gov (United States)

    Ricard, Jacques

    2010-01-01

    The present article discusses the possibility that catalysed chemical networks can evolve. Even simple enzyme-catalysed chemical reactions can display this property. The example studied is that of a two-substrate proteinoid, or enzyme, reaction displaying random binding of its substrates A and B. The fundamental property of such a system is to display either emergence or integration depending on the respective values of the probabilities that the enzyme has bound one of its substrate regardless it has bound the other substrate, or, specifically, after it has bound the other substrate. There is emergence of information if p(A)>p(AB) and p(B)>p(BA). Conversely, if p(A)equilibrium. Moreover, in such systems, emergence results in an increase of the energy level of the ternary EAB complex that becomes closer to the transition state of the reaction, thus leading to the enhancement of catalysis. Hence a drift from quasi-equilibrium is, to a large extent, responsible for the production of information and enhancement of catalysis. Non-equilibrium of these simple systems must be an important aspect that leads to both self-organization and evolutionary processes. These conclusions can be extended to networks of catalysed chemical reactions. Such networks are, in fact, networks of networks, viz. meta-networks. In this formal representation, nodes are chemical reactions catalysed by poorly specific proteinoids, and links can be identified to the transport of metabolites from proteinoid to proteinoid. The concepts of integration and emergence can be applied to such situations and can be used to define the identity of these networks and therefore their evolution. Defined as open non-equilibrium structures, such biochemical networks possess two remarkable properties: (1) the probability of occurrence of their nodes is dependant upon the input and output of matter in, and from, the system and (2) the probability of occurrence of the nodes is strictly linked to their degree of

  3. An efficient algorithm for computing fixed length attractors based on bounded model checking in synchronous Boolean networks with biochemical applications.

    Science.gov (United States)

    Li, X Y; Yang, G W; Zheng, D S; Guo, W S; Hung, W N N

    2015-04-28

    Genetic regulatory networks are the key to understanding biochemical systems. One condition of the genetic regulatory network under different living environments can be modeled as a synchronous Boolean network. The attractors of these Boolean networks will help biologists to identify determinant and stable factors. Existing methods identify attractors based on a random initial state or the entire state simultaneously. They cannot identify the fixed length attractors directly. The complexity of including time increases exponentially with respect to the attractor number and length of attractors. This study used the bounded model checking to quickly locate fixed length attractors. Based on the SAT solver, we propose a new algorithm for efficiently computing the fixed length attractors, which is more suitable for large Boolean networks and numerous attractors' networks. After comparison using the tool BooleNet, empirical experiments involving biochemical systems demonstrated the feasibility and efficiency of our approach.

  4. Quantum network with individual atoms and photons

    International Nuclear Information System (INIS)

    Rempe, G.

    2013-01-01

    Quantum physics allows a new approach to information processing. A grand challenge is the realization of a quantum network for long-distance quantum communication and large-scale quantum simulation. This paper highlights a first implementation of an elementary quantum network with two fibre-linked high-finesse optical resonators, each containing a single quasi-permanently trapped atom as a stationary quantum node. Reversible quantum state transfer between the two atoms and entanglement of the two atoms are achieved by the controlled exchange of a time-symmetric single photon. This approach to quantum networking is efficient and offers a clear perspective for scalability. It allows for arbitrary topologies and features controlled connectivity as well as, in principle, infinite-range interactions. Our system constitutes the largest man-made material quantum system to date and is an ideal test bed for fundamental investigations, e.g. quantum non-locality. (authors)

  5. Quasi-Experimental Study of the Effectiveness of an Integrated Service Delivery Network for the Frail Elderly

    Science.gov (United States)

    Tourigny, Andre; Durand, Pierre J.; Bonin, Lucie; Hebert, Rejean; Rochette, Louis

    2004-01-01

    The aim of this study was to examine the effectiveness of a new, integrated service delivery (ISD) network of health and social services for frail elderly living in a semi-urban community. A quasi-experimental study was conducted from 1997 to 2000, with measures taken before implementation (T0) and every 12 months after implementation for a 3-year…

  6. Physicochemical and biochemical characterization of biosurfactants released by Lactobacillus strains

    NARCIS (Netherlands)

    Velraeds, MMC; vanderMei, HC; Reid, G; Busscher, HJ

    1996-01-01

    Biosurfactants from Lactobacillus casei subsp. rhamnosus 36 and ATCC 7469, Lactobacillus fermentum B54 and Lactobacillus acidophilus RC14 were isolated from bacteria in their mid-exponential (4-5 h) and stationary growth phases (18 h) and physicochemical and biochemical properties of the

  7. Recovery and deformation substructures of zircaloy-4 in high temperature plasticity under stationary or non-stationary stress

    International Nuclear Information System (INIS)

    Bocek, M.; Armas, I.

    1982-01-01

    It was the aim of the present investigation to examine how the recovery rate in creep is influenced by a non-stationary stress. For purposes of phenomenological analysis it is postulated that, irrespective of whether the applied stress is stationary or not, for large strains the mean internal stress sigmasub(i) approaches a stationary value sigmasub(i,s). The stationary recovery rate Rsub(s) for constant load creep turns out be governed by the applied stress indicating that the recovery mechanism is dynamic in nature. For sigma-ramp loading, Rsub(s) is dependent on the stress rate sigma. In tensional stress cycling, Rsub(s) is governed by the maximum stress sigmasub(M) and is also dependent on the ratio of sigmasub(M) to the minimum stress sigma 0 . TEM examination of Zircaloy-4 specimens crept at 800 0 C at constant and cycling load respectively could not reveal any differences in the deformation substructure for the two loading types. Subgrain formation did not appear, individual dislocations were observed only rarely. However, typical networks were formed as well as pileups which perhaps are responsible for the back stress in high temperature plasticity (HTP). (orig.)

  8. Fluctuations and pseudo long range dependence in network flows: A non-stationary Poisson process model

    International Nuclear Information System (INIS)

    Yu-Dong, Chen; Li, Li; Yi, Zhang; Jian-Ming, Hu

    2009-01-01

    In the study of complex networks (systems), the scaling phenomenon of flow fluctuations refers to a certain power-law between the mean flux (activity) (F i ) of the i-th node and its variance σ i as σ i α (F i ) α . Such scaling laws are found to be prevalent both in natural and man-made network systems, but the understanding of their origins still remains limited. This paper proposes a non-stationary Poisson process model to give an analytical explanation of the non-universal scaling phenomenon: the exponent α varies between 1/2 and 1 depending on the size of sampling time window and the relative strength of the external/internal driven forces of the systems. The crossover behaviour and the relation of fluctuation scaling with pseudo long range dependence are also accounted for by the model. Numerical experiments show that the proposed model can recover the multi-scaling phenomenon. (general)

  9. Experimental study of divertor plasma-facing components damage under a combination of pulsed and quasi-stationary heat loads relevant to expected transient events at ITER

    International Nuclear Information System (INIS)

    Klimov, N S; Podkovyrov, V L; Kovalenko, D V; Zhitlukhin, A M; Barsuk, V A; Mazul, I V; Giniyatulin, R N; Kuznetsov, V Ye; Riccardi, B; Loarte, A; Merola, M; Koidan, V S; Linke, J; Landman, I S; Pestchanyi, S E; Bazylev, B N

    2011-01-01

    This paper concerns the experimental study of damage of ITER divertor plasma-facing components (PFCs) under a combination of pulsed plasma heat loads (representative of controlled ITER type I edge-localized modes (ELMs)) and quasi-stationary heat loads (representative of the high heat flux (HHF) thermal fatigue expected during ITER normal operations and slow transient events). The PFC's tungsten armor damage under pulsed plasma exposure was driven by (i) the melt layer motion, which leads to bridges formation between neighboring tiles and (ii) the W brittle failure giving rise to a stable crack pattern on the exposed surface. The crack width reaches a saturation value that does not exceed some tens of micrometers after several hundreds of ELM-like pulses. HHF thermal fatigue tests have shown (i) a peeling-off of the re-solidified material due to its brittle failure and (ii) a significant widening (up to 10 times) of the cracks and the formation of additional cracks.

  10. Quasi-stationary states of an electron with linearly dependent effective mass in an open nanostructure within transmission coefficient and S-matrix methods

    Science.gov (United States)

    Seti, Julia; Tkach, Mykola; Voitsekhivska, Oxana

    2018-03-01

    The exact solutions of the Schrödinger equation for a double-barrier open semiconductor plane nanostructure are obtained by using two different approaches, within the model of the rectangular potential profile and the continuous position-dependent effective mass of the electron. The transmission coefficient and scattering matrix are calculated for the double-barrier nanostructure. The resonance energies and resonance widths of the electron quasi-stationary states are analyzed as a function of the size of the near-interface region between wells and barriers, where the effective mass linearly depends on the coordinate. It is established that, in both methods, the increasing size affects in a qualitatively similar way the spectral characteristics of the states, shifting the resonance energies into the low- or high-energy region and increasing the resonance widths. It is shown that the relative difference of resonance energies and widths of a certain state, obtained in the model of position-dependent effective mass and in the widespread abrupt model in physically correct range of near-interface sizes, does not exceed 0.5% and 5%, respectively, independently of the other geometrical characteristics of the structure.

  11. SAInt – A novel quasi-dynamic model for assessing security of supply in coupled gas and electricity transmission networks

    NARCIS (Netherlands)

    Pambour, Kwabena Addo; Cakir Erdener, Burcin; Bolado-Lavin, Ricardo; Dijkema, Gerhard P.J.

    2017-01-01

    The integration of renewable energy sources into existing electric power systems is connected with an increased interdependence between natural gas and electricity transmission networks. To analyse this interdependence and its impact on security of supply, we developed a novel quasi-dynamic

  12. Dynamic behavior of acrylic acid clusters as quasi-mobile nodes in a model of hydrogel network

    Science.gov (United States)

    Zidek, Jan; Milchev, Andrey; Vilgis, Thomas A.

    2012-12-01

    Using a molecular dynamics simulation, we study the thermo-mechanical behavior of a model hydrogel subject to deformation and change in temperature. The model is found to describe qualitatively poly-lactide-glycolide hydrogels in which acrylic acid (AA)-groups are believed to play the role of quasi-mobile nodes in the formation of a network. From our extensive analysis of the structure, formation, and disintegration of the AA-groups, we are able to elucidate the relationship between structure and viscous-elastic behavior of the model hydrogel. Thus, in qualitative agreement with observations, we find a softening of the mechanical response at large deformations, which is enhanced by growing temperature. Several observables as the non-affinity parameter A and the network rearrangement parameter V indicate the existence of a (temperature-dependent) threshold degree of deformation beyond which the quasi-elastic response of the model system turns over into plastic (ductile) one. The critical stretching when the affinity of the deformation is lost can be clearly located in terms of A and V as well as by analysis of the energy density of the system. The observed stress-strain relationship matches that of known experimental systems.

  13. Shape, size, and robustness: feasible regions in the parameter space of biochemical networks.

    Directory of Open Access Journals (Sweden)

    Adel Dayarian

    2009-01-01

    Full Text Available The concept of robustness of regulatory networks has received much attention in the last decade. One measure of robustness has been associated with the volume of the feasible region, namely, the region in the parameter space in which the system is functional. In this paper, we show that, in addition to volume, the geometry of this region has important consequences for the robustness and the fragility of a network. We develop an approximation within which we could algebraically specify the feasible region. We analyze the segment polarity gene network to illustrate our approach. The study of random walks in the parameter space and how they exit the feasible region provide us with a rich perspective on the different modes of failure of this network model. In particular, we found that, between two alternative ways of activating Wingless, one is more robust than the other. Our method provides a more complete measure of robustness to parameter variation. As a general modeling strategy, our approach is an interesting alternative to Boolean representation of biochemical networks.

  14. Stationary analysis of signals and ratio decay determination in BWR type reactors by neuronal network

    International Nuclear Information System (INIS)

    Sanchis, R.; Palomo, M. J.; Munoz-Cobo, J. L.

    1998-01-01

    The signals registered in the nuclear plants have non stationary characteristics, in numerous times. This made difficult the application of the methods of analysis. There are determinate temporal intervals in that the signal is stationary with determinate mean, value together of zones with corrupt registers, and other zones with mean value distinct, but stationary during a temporal interval. The methodology consist in a stationary analysis to the signal received of the nuclear plant. With the Gabor Transformation are determined the temporal intervals of the stationary signals, synthesised it, as previous phase to the application of the methods of the analysis of stability parameters with methods ARMA, SVD, Neural Net,... to the reconstructed signal. 4 refs. (Author)

  15. On the existence of classical solutions for stationary extended mean field games

    KAUST Repository

    Gomes, Diogo A.; Patrizi, Stefania; Voskanyan, Vardan

    2014-01-01

    In this paper we consider extended stationary mean-field games, that is mean-field games which depend on the velocity field of the players. We prove various a-priori estimates which generalize the results for quasi-variational mean-field games in Gomes et al. (2012). In addition we use adjoint method techniques to obtain higher regularity bounds. Then we establish the existence of smooth solutions under fairly general conditions by applying the continuity method. When applied to standard stationary mean-field games as in Lasry and Lions (2006), Gomes and Sanchez-Morgado (2011) or Gomes et al. (2012) this paper yields various new estimates and regularity properties not available previously. We discuss additionally several examples where the existence of classical solutions can be proved. © 2013 Elsevier Ltd. All rights reserved.

  16. On the existence of classical solutions for stationary extended mean field games

    KAUST Repository

    Gomes, Diogo A.

    2014-04-01

    In this paper we consider extended stationary mean-field games, that is mean-field games which depend on the velocity field of the players. We prove various a-priori estimates which generalize the results for quasi-variational mean-field games in Gomes et al. (2012). In addition we use adjoint method techniques to obtain higher regularity bounds. Then we establish the existence of smooth solutions under fairly general conditions by applying the continuity method. When applied to standard stationary mean-field games as in Lasry and Lions (2006), Gomes and Sanchez-Morgado (2011) or Gomes et al. (2012) this paper yields various new estimates and regularity properties not available previously. We discuss additionally several examples where the existence of classical solutions can be proved. © 2013 Elsevier Ltd. All rights reserved.

  17. The PaPsr1 and PaWhi2 genes are members of the regulatory network that connect stationary phase to mycelium differentiation and reproduction in Podospora anserina.

    Science.gov (United States)

    Timpano, Hélène; Chan Ho Tong, Laetitia; Gautier, Valérie; Lalucque, Hervé; Silar, Philippe

    2016-09-01

    In filamentous fungi, entrance into stationary phase is complex as it is accompanied by several differentiation and developmental processes, including the synthesis of pigments, aerial hyphae, anastomoses and sporophores. The regulatory networks that control these processes are still incompletely known. The analysis of the "Impaired in the development of Crippled Growth (IDC)" mutants of the model filamentous ascomycete Podospora anserina has already yielded important information regarding the pathway regulating entrance into stationary phase. Here, the genes affected in two additional IDC mutants are identified as orthologues of the Saccharomyces cerevisiae WHI2 and PSR1 genes, known to regulate stationary phase in this yeast, arguing for a conserved role of these proteins throughout the evolution of ascomycetes. Copyright © 2016 Elsevier Inc. All rights reserved.

  18. Quasi-static analysis of flexible pavements based on predicted frequencies using Fast Fourier Transform and Artificial Neural Network

    Directory of Open Access Journals (Sweden)

    Ali Reza Ghanizadeh

    2018-01-01

    Full Text Available New trend in design of flexible pavements is mechanistic-empirical approach. The first step for applying this method is analyzing the pavement structure for several times and computation of critical stresses and strains, which needs a fast analysis method with good accuracy. This paper aims to introduce a new rapid pavement analysis approach, which can consider the history of loading and rate effect. To this end, 1200 flexible pavement sections were analyzed, and equivalent frequencies (EF were calculated using Fast Fourier Transform (FFT method at various depths of asphalt layer. A nonlinear regression equation has been presented for determining EF at different depths of asphalt layer. For more accurate predicting of EF at low frequencies, a feed-forward Artificial Neural Network (ANN was employed, which allows accurate prediction of EF. The frequencies obtained by the proposed regression equation and ANN were compared with frequencies observed in Virginia Smart Road project, and it was found that there is a good agreement between observed and predicted frequencies. Comparison of quasi-static analysis of flexible pavements by frequencies obtained using FFT method and full dynamic analysis by 3D-Move program approves that the critical responses of pavement computed by proposed quasi-static analysis approach are comparable to critical responses computed using full dynamic analysis. Keywords: Equivalent frequency, Fast Fourier Transform (FFT, Pavement quasi-static analysis, Dynamic modulus, Artificial Neural Network (ANN

  19. The interdependence between the incidence angles associated with quasi-stable intersections during ion erosion

    International Nuclear Information System (INIS)

    Vasiliu, F.; Frunza, S.

    1984-01-01

    A general discussion, which is valid for any angular dependence of sputtering yield S = S(theta), concerning the interdependence between the incidence angles thetasub(e) and theta 0 , associated with quasi-stable intersections during ion erosion, is given. The object was firstly to establish the location of thetasub(e) roots as a function of theta 0 and secondly to identify the stationary points and general trend for the complex dependence thetasub(e) = thetasub(e)(theta 0 ). The results obtained are applied to a quasi-stability analysis of some specific surface features during ion erosion. Various possible types of quasi-stable intersections (surface-surface, plane-surface, plane-plane) are reviewed from the point of view of their evolution caused by ion bombardment. (author)

  20. HSimulator: Hybrid Stochastic/Deterministic Simulation of Biochemical Reaction Networks

    Directory of Open Access Journals (Sweden)

    Luca Marchetti

    2017-01-01

    Full Text Available HSimulator is a multithread simulator for mass-action biochemical reaction systems placed in a well-mixed environment. HSimulator provides optimized implementation of a set of widespread state-of-the-art stochastic, deterministic, and hybrid simulation strategies including the first publicly available implementation of the Hybrid Rejection-based Stochastic Simulation Algorithm (HRSSA. HRSSA, the fastest hybrid algorithm to date, allows for an efficient simulation of the models while ensuring the exact simulation of a subset of the reaction network modeling slow reactions. Benchmarks show that HSimulator is often considerably faster than the other considered simulators. The software, running on Java v6.0 or higher, offers a simulation GUI for modeling and visually exploring biological processes and a Javadoc-documented Java library to support the development of custom applications. HSimulator is released under the COSBI Shared Source license agreement (COSBI-SSLA.

  1. Faithful transformation of quasi-isotropic to Weyl-Papapetrou coordinates: a prerequisite to compare metrics

    International Nuclear Information System (INIS)

    Pappas, G; Apostolatos, T A

    2008-01-01

    We demonstrate how one should transform correctly quasi-isotropic coordinates to Weyl-Papapetrou coordinates in order to compare the metric around a rotating star, which has been constructed numerically in the former coordinates, with an axially symmetric stationary metric, which is given through an analytical form in the latter coordinates. (comments, replies and notes)

  2. Faithful transformation of quasi-isotropic to Weyl-Papapetrou coordinates: a prerequisite to compare metrics

    Energy Technology Data Exchange (ETDEWEB)

    Pappas, G; Apostolatos, T A [Section of Astrophysics, Astronomy and Mechanics, Department of Physics, University of Athens, Panepistimiopolis Zografos GR15783, Athens (Greece)

    2008-11-21

    We demonstrate how one should transform correctly quasi-isotropic coordinates to Weyl-Papapetrou coordinates in order to compare the metric around a rotating star, which has been constructed numerically in the former coordinates, with an axially symmetric stationary metric, which is given through an analytical form in the latter coordinates. (comments, replies and notes)

  3. Quasi-equilibrium models of magnetized compact objects

    International Nuclear Information System (INIS)

    Markakis, Charalampos; Uryu, Koji; Gourgoulhon, Eric

    2011-01-01

    We report work towards a relativistic formulation for modeling strongly magnetized neutron stars, rotating or in a close circular orbit around another neutron star or black hole, under the approximations of helical symmetry and ideal MHD. The quasi-stationary evolution is governed by the frst law of thermodynamics for helically symmetric systems, which is generalized to include magnetic felds. The formulation involves an iterative scheme for solving the Einstein-Maxwell and relativistic MHD-Euler equations numerically. The resulting configurations for binary systems could be used as self-consistent initial data for studying their inspiral and merger.

  4. On the application of the method of turbulent flow to transient and quasi-stationary flow calculations in high temperature reactors with spherical fuel elements

    International Nuclear Information System (INIS)

    Hoefer, I.

    1980-12-01

    For the calculation of flows in high-temperature reactors and of their temperature behavior the equations of the method of turbulent flow in the primitive form are derived for inhomogeneous regions. This system of equations is appropriate for the investigation of transient and quasi-stationary phenomena in pebble beds. By modification of the flow function in parallel arranged reflector channels a parallel flow can be simulated. For simplification the flow in region with a smaller pressure loss is assumed to be a potential flow. For the numerical solution of the time-dependent convective parts of the system of equations a number of explicit and implicit difference methods are compared. If the method using UP-WIND differences is taken to be an interpolation method the introduction of an extension becomes possible, which together with preliminary integration of the fictional terms allows to apply larger time steps. The algebraic system of equations for numerical calculation of a steady flow field also is established by formation of UP-WIND differences for the convective terms. By mathematical verification of some examples the applicability of the mathematical model for flow problems in pebble beds with forced or natural convection is shown. (orig.) [de

  5. Full-Band Quasi-Harmonic Analysis and Synthesis of Musical Instrument Sounds with Adaptive Sinusoids

    Directory of Open Access Journals (Sweden)

    Marcelo Caetano

    2016-05-01

    Full Text Available Sinusoids are widely used to represent the oscillatory modes of musical instrument sounds in both analysis and synthesis. However, musical instrument sounds feature transients and instrumental noise that are poorly modeled with quasi-stationary sinusoids, requiring spectral decomposition and further dedicated modeling. In this work, we propose a full-band representation that fits sinusoids across the entire spectrum. We use the extended adaptive Quasi-Harmonic Model (eaQHM to iteratively estimate amplitude- and frequency-modulated (AM–FM sinusoids able to capture challenging features such as sharp attacks, transients, and instrumental noise. We use the signal-to-reconstruction-error ratio (SRER as the objective measure for the analysis and synthesis of 89 musical instrument sounds from different instrumental families. We compare against quasi-stationary sinusoids and exponentially damped sinusoids. First, we show that the SRER increases with adaptation in eaQHM. Then, we show that full-band modeling with eaQHM captures partials at the higher frequency end of the spectrum that are neglected by spectral decomposition. Finally, we demonstrate that a frame size equal to three periods of the fundamental frequency results in the highest SRER with AM–FM sinusoids from eaQHM. A listening test confirmed that the musical instrument sounds resynthesized from full-band analysis with eaQHM are virtually perceptually indistinguishable from the original recordings.

  6. Optimization of end-pumped, actively Q-switched quasi-III-level lasers.

    Science.gov (United States)

    Jabczynski, Jan K; Gorajek, Lukasz; Kwiatkowski, Jacek; Kaskow, Mateusz; Zendzian, Waldemar

    2011-08-15

    The new model of end-pumped quasi-III-level laser considering transient pumping processes, ground-state-depletion and up-conversion effects was developed. The model consists of two parts: pumping stage and Q-switched part, which can be separated in a case of active Q-switching regime. For pumping stage the semi-analytical model was developed, enabling the calculations for final occupation of upper laser level for given pump power and duration, spatial profile of pump beam, length and dopant level of gain medium. For quasi-stationary inversion, the optimization procedure of Q-switching regime based on Lagrange multiplier technique was developed. The new approach for optimization of CW regime of quasi-three-level lasers was developed to optimize the Q-switched lasers operating with high repetition rates. Both methods of optimizations enable calculation of optimal absorbance of gain medium and output losses for given pump rate. © 2011 Optical Society of America

  7. Hop-distance relationship analysis with quasi-UDG model for node localization in wireless sensor networks

    Directory of Open Access Journals (Sweden)

    Chen Ping

    2011-01-01

    Full Text Available Abstract In wireless sensor networks (WSNs, location information plays an important role in many fundamental services which includes geographic routing, target tracking, location-based coverage, topology control, and others. One promising approach in sensor network localization is the determination of location based on hop counts. A critical priori of this approach that directly influences the accuracy of location estimation is the hop-distance relationship. However, most of the related works on the hop-distance relationship assume the unit-disk graph (UDG model that is unrealistic in a practical scenario. In this paper, we formulate the hop-distance relationship for quasi-UDG model in WSNs where sensor nodes are randomly and independently deployed in a circular region based on a Poisson point process. Different from the UDG model, quasi-UDG model has the non-uniformity property for connectivity. We derive an approximated recursive expression for the probability of the hop count with a given geographic distance. The border effect and dependence problem are also taken into consideration. Furthermore, we give the expressions describing the distribution of distance with known hop counts for inner nodes and those suffered from the border effect where we discover the insignificance of the border effect. The analytical results are validated by simulations showing the accuracy of the employed approximation. Besides, we demonstrate the localization application of the formulated relationship and show the accuracy improvement in the WSN localization.

  8. Markovian dynamics on complex reaction networks

    Energy Technology Data Exchange (ETDEWEB)

    Goutsias, J., E-mail: goutsias@jhu.edu; Jenkinson, G., E-mail: jenkinson@jhu.edu

    2013-08-10

    Complex networks, comprised of individual elements that interact with each other through reaction channels, are ubiquitous across many scientific and engineering disciplines. Examples include biochemical, pharmacokinetic, epidemiological, ecological, social, neural, and multi-agent networks. A common approach to modeling such networks is by a master equation that governs the dynamic evolution of the joint probability mass function of the underlying population process and naturally leads to Markovian dynamics for such process. Due however to the nonlinear nature of most reactions and the large size of the underlying state-spaces, computation and analysis of the resulting stochastic population dynamics is a difficult task. This review article provides a coherent and comprehensive coverage of recently developed approaches and methods to tackle this problem. After reviewing a general framework for modeling Markovian reaction networks and giving specific examples, the authors present numerical and computational techniques capable of evaluating or approximating the solution of the master equation, discuss a recently developed approach for studying the stationary behavior of Markovian reaction networks using a potential energy landscape perspective, and provide an introduction to the emerging theory of thermodynamic analysis of such networks. Three representative problems of opinion formation, transcription regulation, and neural network dynamics are used as illustrative examples.

  9. Markovian dynamics on complex reaction networks

    International Nuclear Information System (INIS)

    Goutsias, J.; Jenkinson, G.

    2013-01-01

    Complex networks, comprised of individual elements that interact with each other through reaction channels, are ubiquitous across many scientific and engineering disciplines. Examples include biochemical, pharmacokinetic, epidemiological, ecological, social, neural, and multi-agent networks. A common approach to modeling such networks is by a master equation that governs the dynamic evolution of the joint probability mass function of the underlying population process and naturally leads to Markovian dynamics for such process. Due however to the nonlinear nature of most reactions and the large size of the underlying state-spaces, computation and analysis of the resulting stochastic population dynamics is a difficult task. This review article provides a coherent and comprehensive coverage of recently developed approaches and methods to tackle this problem. After reviewing a general framework for modeling Markovian reaction networks and giving specific examples, the authors present numerical and computational techniques capable of evaluating or approximating the solution of the master equation, discuss a recently developed approach for studying the stationary behavior of Markovian reaction networks using a potential energy landscape perspective, and provide an introduction to the emerging theory of thermodynamic analysis of such networks. Three representative problems of opinion formation, transcription regulation, and neural network dynamics are used as illustrative examples

  10. Propagation of kinetic uncertainties through a canonical topology of the TLR4 signaling network in different regions of biochemical reaction space

    Directory of Open Access Journals (Sweden)

    St Laurent Georges

    2010-03-01

    Full Text Available Abstract Background Signal transduction networks represent the information processing systems that dictate which dynamical regimes of biochemical activity can be accessible to a cell under certain circumstances. One of the major concerns in molecular systems biology is centered on the elucidation of the robustness properties and information processing capabilities of signal transduction networks. Achieving this goal requires the establishment of causal relations between the design principle of biochemical reaction systems and their emergent dynamical behaviors. Methods In this study, efforts were focused in the construction of a relatively well informed, deterministic, non-linear dynamic model, accounting for reaction mechanisms grounded on standard mass action and Hill saturation kinetics, of the canonical reaction topology underlying Toll-like receptor 4 (TLR4-mediated signaling events. This signaling mechanism has been shown to be deployed in macrophages during a relatively short time window in response to lypopolysaccharyde (LPS stimulation, which leads to a rapidly mounted innate immune response. An extensive computational exploration of the biochemical reaction space inhabited by this signal transduction network was performed via local and global perturbation strategies. Importantly, a broad spectrum of biologically plausible dynamical regimes accessible to the network in widely scattered regions of parameter space was reconstructed computationally. Additionally, experimentally reported transcriptional readouts of target pro-inflammatory genes, which are actively modulated by the network in response to LPS stimulation, were also simulated. This was done with the main goal of carrying out an unbiased statistical assessment of the intrinsic robustness properties of this canonical reaction topology. Results Our simulation results provide convincing numerical evidence supporting the idea that a canonical reaction mechanism of the TLR4

  11. Stationary and non-stationary occurrences of miniature end plate potentials are well described as stationary and non-stationary Poisson processes in the mollusc Navanax inermis.

    Science.gov (United States)

    Cappell, M S; Spray, D C; Bennett, M V

    1988-06-28

    Protractor muscles in the gastropod mollusc Navanax inermis exhibit typical spontaneous miniature end plate potentials with mean amplitude 1.71 +/- 1.19 (standard deviation) mV. The evoked end plate potential is quantized, with a quantum equal to the miniature end plate potential amplitude. When their rate is stationary, occurrence of miniature end plate potentials is a random, Poisson process. When non-stationary, spontaneous miniature end plate potential occurrence is a non-stationary Poisson process, a Poisson process with the mean frequency changing with time. This extends the random Poisson model for miniature end plate potentials to the frequently observed non-stationary occurrence. Reported deviations from a Poisson process can sometimes be accounted for by the non-stationary Poisson process and more complex models, such as clustered release, are not always needed.

  12. On the origin of the mesospheric quasi-stationary planetary waves in the unusual Arctic winter 2015/2016

    Science.gov (United States)

    Matthias, Vivien; Ern, Manfred

    2018-04-01

    The midwinter 2015/2016 was characterized by an unusually strong polar night jet (PNJ) and extraordinarily large stationary planetary wave (SPW) amplitudes in the subtropical mesosphere. The aim of this study is, therefore, to find the origin of these mesospheric SPWs in the midwinter 2015/2016 study period. The study duration is split into two periods: the first period runs from late December 2015 until early January 2016 (Period I), and the second period from early January until mid-January 2016 (Period II). While the SPW 1 dominates in the subtropical mesosphere in Period I, it is the SPW 2 that dominates in Period II. There are three possibilities explaining how SPWs can occur in the mesosphere: (1) they propagate upward from the stratosphere, (2) they are generated in situ by longitudinally variable gravity wave (GW) drag, or (3) they are generated in situ by barotropic and/or baroclinic instabilities. Using global satellite observations from the Microwave Limb Sounder (MLS) and the Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) the origin of the mesospheric SPWs is investigated for both time periods. We find that due to the strong PNJ the SPWs were not able to propagate upward into the mesosphere northward of 50° N but were deflected upward and equatorward into the subtropical mesosphere. We show that the SPWs observed in the subtropical mesosphere are the same SPWs as in the mid-latitudinal stratosphere. Simultaneously, we find evidence that the mesospheric SPWs in polar latitudes were generated in situ by longitudinally variable GW drag and that there is a mixture of in situ generation by longitudinally variable GW drag and by instabilities at mid-latitudes. Our results, based on observations, show that the abovementioned three mechanisms can act at the same time which confirms earlier model studies. Additionally, the possible contribution from, or impact of, unusually strong SPWs in the subtropical mesosphere to the disruption of

  13. Creating and shaping innovation systems: Formal networks in the innovation system for stationary fuel cells in Germany

    International Nuclear Information System (INIS)

    Musiolik, Joerg; Markard, Jochen

    2011-01-01

    The development and diffusion of novel technologies, e.g. for decentralized energy generation, crucially depends on supportive institutional structures such as R and D programs, specific regulations, technical standards, or positive expectations. Such structures are not given but emerge through the interplay of different kinds of actors. In this paper, we study the role of formal networks in creating supportive structures in the technological innovation system for stationary fuel cells in Germany. Our findings are based on an in-depth study of five selected innovation networks. The analysis shows that the networks were strategically set up to support the creation of a variety of elements including public R and D programs, modules for vocational training, technical guidelines, standardized components, or a positive image of the technology. These elements have been reported to generate positive externalities in the field, e.g. as they help to establish user-supplier linkages in the emerging value chain. We conclude that, from a firm perspective such elements may represent strategically relevant resources made available at the innovation system level. This view opens up a link to the literature of strategic management, thus highlighting the importance of strategic action and cooperation in emerging technological fields. - Research Highlights: → We combine technological innovation systems with resource-based reasoning. → Formal networks are strategically set up to create and shape technological innovation systems. → Formal networks create system resources which provide positive externalities in emerging fields. → Collective action is essential for the build-up of energy innovation systems.

  14. Creating and shaping innovation systems: Formal networks in the innovation system for stationary fuel cells in Germany

    Energy Technology Data Exchange (ETDEWEB)

    Musiolik, Joerg, E-mail: joerg.musiolik@eawag.c [Cirus - Innovation Research in Utility Sectors, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Uberlandstrasse 133, 8600 Duebendorf (Switzerland); Markard, Jochen [Cirus - Innovation Research in Utility Sectors, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Uberlandstrasse 133, 8600 Duebendorf (Switzerland)

    2011-04-15

    The development and diffusion of novel technologies, e.g. for decentralized energy generation, crucially depends on supportive institutional structures such as R and D programs, specific regulations, technical standards, or positive expectations. Such structures are not given but emerge through the interplay of different kinds of actors. In this paper, we study the role of formal networks in creating supportive structures in the technological innovation system for stationary fuel cells in Germany. Our findings are based on an in-depth study of five selected innovation networks. The analysis shows that the networks were strategically set up to support the creation of a variety of elements including public R and D programs, modules for vocational training, technical guidelines, standardized components, or a positive image of the technology. These elements have been reported to generate positive externalities in the field, e.g. as they help to establish user-supplier linkages in the emerging value chain. We conclude that, from a firm perspective such elements may represent strategically relevant resources made available at the innovation system level. This view opens up a link to the literature of strategic management, thus highlighting the importance of strategic action and cooperation in emerging technological fields. - Research Highlights: {yields} We combine technological innovation systems with resource-based reasoning. {yields} Formal networks are strategically set up to create and shape technological innovation systems. {yields} Formal networks create system resources which provide positive externalities in emerging fields. {yields} Collective action is essential for the build-up of energy innovation systems.

  15. Ionospheric feedback effects on the quasi-stationary coupling between LLBL and postnoon/evening discrete auroral arcs

    Directory of Open Access Journals (Sweden)

    M. M. Echim

    2008-05-01

    Full Text Available We discuss a model for the quasi-stationary coupling between magnetospheric sheared flows in the dusk sector and discrete auroral arcs, previously analyzed for the case of a uniform height-integrated Pedersen conductivity (ΣP. Here we introduce an ionospheric feedback as the variation of ΣP with the energy flux of precipitating magnetospheric electrons (εem. One key-component of the model is the kinetic description of the interface between the duskward LLBL and the plasma sheet that gives the profile of Φm, the magnetospheric electrostatic potential. The velocity shear in the dusk LLBL plays the role of a generator for the auroral circuit closing through Pedersen currents in the auroral ionosphere. The field-aligned current density, j||, and the energy flux of precipitating electrons are given by analytic functions of the field-aligned potential drop, ΔΦ, derived from standard kinetic models of the adiabatic motion of particles. The ionospheric electrostatic potential, Φi (and implicitely ΔΦ is determined from the current continuity equation in the ionosphere. We obtain values of ΔΦ of the order of kilovolt and of j|| of the order of tens of μA/m2 in thin regions of the order of several kilometers at 200 km altitude. The spatial scale is significantly smaller and the peak values of ΔΦ, j|| and εem are higher than in the case of a uniform ΣP. Effects on the postnoon/evening auroral arc electrodynamics due to variations of dusk LLBL and solar wind dynamic and kinetic pressure are discussed. In thin regions (of the order of kilometer embedding the maximum of ΔΦ we evidence a non-linear regime of the current-voltage relationship. The model predicts also that visible arcs form when the velocity shear in LLBL is above a threshold value depending on the generator and ionospheric plasma properties. Brighter arcs are obtained for increased velocity shear in the LLBL; their spatial scale remains virtually unmodified. The field

  16. Social networking versus facebook advertising to recruit survey respondents: a quasi-experimental study.

    Science.gov (United States)

    Gilligan, Conor; Kypri, Kypros; Bourke, Jesse

    2014-09-17

    Increasingly, social contact and knowledge of other people's attitudes and behavior are mediated by online social media such as Facebook. The main research to which this recruitment study pertains investigates the influence of parents on adolescent alcohol consumption. Given the pervasiveness of online social media use, Facebook may be an effective means of recruitment and intervention delivery. The objective of the study was to determine the efficacy of study recruitment via social networks versus paid advertising on Facebook. We conducted a quasi-experimental sequential trial with response rate as the outcome, and estimates of cost-effectiveness. The target population was parents of 13-17 year old children attending high schools in the Hunter region of New South Wales, Australia. Recruitment occurred via: method (1) social recruitment using Facebook, email-based, social networks, and media coverage followed by method (2) Facebook advertising. Using a range of online and other social network approaches only: method (1) 74 parents were recruited to complete a survey over eight months, costing AUD58.70 per completed survey. After Facebook advertising: method (2) 204 parents completed the survey over four weeks, costing AUD5.94 per completed survey. Participants were representative of the parents recruited from the region's schools using standard mail and email. Facebook advertising is a cost-effective means of recruiting parents, a group difficult to reach by other methods.

  17. HRSSA – Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks

    International Nuclear Information System (INIS)

    Marchetti, Luca; Priami, Corrado; Thanh, Vo Hong

    2016-01-01

    This paper introduces HRSSA (Hybrid Rejection-based Stochastic Simulation Algorithm), a new efficient hybrid stochastic simulation algorithm for spatially homogeneous biochemical reaction networks. HRSSA is built on top of RSSA, an exact stochastic simulation algorithm which relies on propensity bounds to select next reaction firings and to reduce the average number of reaction propensity updates needed during the simulation. HRSSA exploits the computational advantage of propensity bounds to manage time-varying transition propensities and to apply dynamic partitioning of reactions, which constitute the two most significant bottlenecks of hybrid simulation. A comprehensive set of simulation benchmarks is provided for evaluating performance and accuracy of HRSSA against other state of the art algorithms.

  18. HRSSA – Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks

    Energy Technology Data Exchange (ETDEWEB)

    Marchetti, Luca, E-mail: marchetti@cosbi.eu [The Microsoft Research – University of Trento Centre for Computational and Systems Biology (COSBI), Piazza Manifattura, 1, 38068 Rovereto (Italy); Priami, Corrado, E-mail: priami@cosbi.eu [The Microsoft Research – University of Trento Centre for Computational and Systems Biology (COSBI), Piazza Manifattura, 1, 38068 Rovereto (Italy); University of Trento, Department of Mathematics (Italy); Thanh, Vo Hong, E-mail: vo@cosbi.eu [The Microsoft Research – University of Trento Centre for Computational and Systems Biology (COSBI), Piazza Manifattura, 1, 38068 Rovereto (Italy)

    2016-07-15

    This paper introduces HRSSA (Hybrid Rejection-based Stochastic Simulation Algorithm), a new efficient hybrid stochastic simulation algorithm for spatially homogeneous biochemical reaction networks. HRSSA is built on top of RSSA, an exact stochastic simulation algorithm which relies on propensity bounds to select next reaction firings and to reduce the average number of reaction propensity updates needed during the simulation. HRSSA exploits the computational advantage of propensity bounds to manage time-varying transition propensities and to apply dynamic partitioning of reactions, which constitute the two most significant bottlenecks of hybrid simulation. A comprehensive set of simulation benchmarks is provided for evaluating performance and accuracy of HRSSA against other state of the art algorithms.

  19. Pore network modeling of drainage process in patterned porous media: a quasi-static study

    KAUST Repository

    Zhang, Tao

    2015-04-17

    This work represents a preliminary investigation on the role of wettability conditions on the flow of a two-phase system in porous media. Since such effects have been lumped implicitly in relative permeability-saturation and capillary pressure-saturation relationships, it is quite challenging to isolate its effects explicitly in real porous media applications. However, within the framework of pore network models, it is easy to highlight the effects of wettability conditions on the transport of two-phase systems. We employ quasi-static investigation in which the system undergo slow movement based on slight increment of the imposed pressure. Several numerical experiments of the drainage process are conducted to displace a wetting fluid with a non-wetting one. In all these experiments the network is assigned different scenarios of various wettability patterns. The aim is to show that the drainage process is very much affected by the imposed pattern of wettability. The wettability conditions are imposed by assigning the value of contact angle to each pore throat according to predefined patterns.

  20. Two-state ion heating at quasi-parallel shocks

    International Nuclear Information System (INIS)

    Thomsen, M.F.; Gosling, J.T.; Bame, S.J.; Onsager, T.G.; Russell, C.T.

    1990-01-01

    In a previous study of ion heating at quasi-parallel shocks, the authors showed a case in which the ion distributions downstream from the shock alternated between a cooler, denser, core/shoulder type and a hotter, less dense, more Maxwellian type. In this paper they further document the alternating occurrence of two different ion states downstream from several quasi-parallel shocks. Three separate lines of evidence are presented to show that the two states are not related in an evolutionary sense, but rather both are produced alternately at the shock: (1) the asymptotic downstream plasma parameters (density, ion temperature, and flow speed) are intermediate between those characterizing the two different states closer to the shock, suggesting that the asymptotic state is produced by a mixing of the two initial states; (2) examples of apparently interpenetrating (i.e., mixing) distributions can be found during transitions from one state to the other; and (3) examples of both types of distributions can be found at actual crossings of the shock ramp. The alternation between the two different types of ion distribution provides direct observational support for the idea that the dissipative dynamics of at least some quasi-parallel shocks is non-stationary and cyclic in nature, as demonstrated by recent numerical simulations. Typical cycle times between intervals of similar ion heating states are ∼2 upstream ion gyroperiods. Both the simulations and the in situ observations indicate that a process of coherent ion reflection is commonly an important part of the dissipation at quasi-parallel shocks

  1. Statistical quasi-particle theory for open quantum systems

    Science.gov (United States)

    Zhang, Hou-Dao; Xu, Rui-Xue; Zheng, Xiao; Yan, YiJing

    2018-04-01

    This paper presents a comprehensive account on the recently developed dissipaton-equation-of-motion (DEOM) theory. This is a statistical quasi-particle theory for quantum dissipative dynamics. It accurately describes the influence of bulk environments, with a few number of quasi-particles, the dissipatons. The novel dissipaton algebra is then followed, which readily bridges the Schrödinger equation to the DEOM theory. As a fundamental theory of quantum mechanics in open systems, DEOM characterizes both the stationary and dynamic properties of system-and-bath interferences. It treats not only the quantum dissipative systems of primary interest, but also the hybrid environment dynamics that could be experimentally measurable. Examples are the linear or nonlinear Fano interferences and the Herzberg-Teller vibronic couplings in optical spectroscopies. This review covers the DEOM construction, the underlying dissipaton algebra and theorems, the physical meanings of dynamical variables, the possible identifications of dissipatons, and some recent advancements in efficient DEOM evaluations on various problems. The relations of the present theory to other nonperturbative methods are also critically presented.

  2. Strong quasi-particle tunneling study in the paired quantum Hall states

    OpenAIRE

    Nomura, Kentaro; Yoshioka, Daijiro

    2001-01-01

    The quasi-particle tunneling phenomena in the paired fractional quantum Hall states are studied. A single point-contact system is first considered. Because of relevancy of the quasi-particle tunneling term, the strong tunneling regime should be investigated. Using the instanton method it is shown that the strong quasi-particle tunneling regime is described as the weak electron tunneling regime effectively. Expanding to the network model the paired quantum Hall liquid to insulator transition i...

  3. Slow-fast stochastic diffusion dynamics and quasi-stationarity for diploid populations with varying size.

    Science.gov (United States)

    Coron, Camille

    2016-01-01

    We are interested in the long-time behavior of a diploid population with sexual reproduction and randomly varying population size, characterized by its genotype composition at one bi-allelic locus. The population is modeled by a 3-dimensional birth-and-death process with competition, weak cooperation and Mendelian reproduction. This stochastic process is indexed by a scaling parameter K that goes to infinity, following a large population assumption. When the individual birth and natural death rates are of order K, the sequence of stochastic processes indexed by K converges toward a new slow-fast dynamics with variable population size. We indeed prove the convergence toward 0 of a fast variable giving the deviation of the population from quasi Hardy-Weinberg equilibrium, while the sequence of slow variables giving the respective numbers of occurrences of each allele converges toward a 2-dimensional diffusion process that reaches (0,0) almost surely in finite time. The population size and the proportion of a given allele converge toward a Wright-Fisher diffusion with stochastically varying population size and diploid selection. We insist on differences between haploid and diploid populations due to population size stochastic variability. Using a non trivial change of variables, we study the absorption of this diffusion and its long time behavior conditioned on non-extinction. In particular we prove that this diffusion starting from any non-trivial state and conditioned on not hitting (0,0) admits a unique quasi-stationary distribution. We give numerical approximations of this quasi-stationary behavior in three biologically relevant cases: neutrality, overdominance, and separate niches.

  4. Social Networking Versus Facebook Advertising to Recruit Survey Respondents: A Quasi-Experimental Study

    Science.gov (United States)

    Kypri, Kypros; Bourke, Jesse

    2014-01-01

    Background Increasingly, social contact and knowledge of other people’s attitudes and behavior are mediated by online social media such as Facebook. The main research to which this recruitment study pertains investigates the influence of parents on adolescent alcohol consumption. Given the pervasiveness of online social media use, Facebook may be an effective means of recruitment and intervention delivery. Objective The objective of the study was to determine the efficacy of study recruitment via social networks versus paid advertising on Facebook. Methods We conducted a quasi-experimental sequential trial with response rate as the outcome, and estimates of cost-effectiveness. The target population was parents of 13-17 year old children attending high schools in the Hunter region of New South Wales, Australia. Recruitment occurred via: method (1) social recruitment using Facebook, email-based, social networks, and media coverage followed by method (2) Facebook advertising. Results Using a range of online and other social network approaches only: method (1) 74 parents were recruited to complete a survey over eight months, costing AUD58.70 per completed survey. After Facebook advertising: method (2) 204 parents completed the survey over four weeks, costing AUD5.94 per completed survey. Participants were representative of the parents recruited from the region’s schools using standard mail and email. Conclusions Facebook advertising is a cost-effective means of recruiting parents, a group difficult to reach by other methods. PMID:25230740

  5. Multidimensional biochemical information processing of dynamical patterns.

    Science.gov (United States)

    Hasegawa, Yoshihiko

    2018-02-01

    Cells receive signaling molecules by receptors and relay information via sensory networks so that they can respond properly depending on the type of signal. Recent studies have shown that cells can extract multidimensional information from dynamical concentration patterns of signaling molecules. We herein study how biochemical systems can process multidimensional information embedded in dynamical patterns. We model the decoding networks by linear response functions, and optimize the functions with the calculus of variations to maximize the mutual information between patterns and output. We find that, when the noise intensity is lower, decoders with different linear response functions, i.e., distinct decoders, can extract much information. However, when the noise intensity is higher, distinct decoders do not provide the maximum amount of information. This indicates that, when transmitting information by dynamical patterns, embedding information in multiple patterns is not optimal when the noise intensity is very large. Furthermore, we explore the biochemical implementations of these decoders using control theory and demonstrate that these decoders can be implemented biochemically through the modification of cascade-type networks, which are prevalent in actual signaling pathways.

  6. Stationary and through-flow radiochemical detectors in cooperation with high performance liquid chromatography: Application in biochemistry

    International Nuclear Information System (INIS)

    Kehr, J.

    1986-01-01

    A review article is presented containing some original experimental data and discussing the usability of radiochemical detection of labelled compounds using high performance liquid chromatography. The stationary and through-flow types of detection are compared with respect to efficiency, chromatographic zone resolution, usability in biochemical research, and also to the current trends of development of liquid chromatography. (author). 3 figs., 1 tab., 19 refs

  7. Dynamic Modeling of Cell-Free Biochemical Networks Using Effective Kinetic Models

    Directory of Open Access Journals (Sweden)

    Joseph A. Wayman

    2015-03-01

    Full Text Available Cell-free systems offer many advantages for the study, manipulation and modeling of metabolism compared to in vivo processes. Many of the challenges confronting genome-scale kinetic modeling can potentially be overcome in a cell-free system. For example, there is no complex transcriptional regulation to consider, transient metabolic measurements are easier to obtain, and we no longer have to consider cell growth. Thus, cell-free operation holds several significant advantages for model development, identification and validation. Theoretically, genome-scale cell-free kinetic models may be possible for industrially important organisms, such as E. coli, if a simple, tractable framework for integrating allosteric regulation with enzyme kinetics can be formulated. Toward this unmet need, we present an effective biochemical network modeling framework for building dynamic cell-free metabolic models. The key innovation of our approach is the integration of simple effective rules encoding complex allosteric regulation with traditional kinetic pathway modeling. We tested our approach by modeling the time evolution of several hypothetical cell-free metabolic networks. We found that simple effective rules, when integrated with traditional enzyme kinetic expressions, captured complex allosteric patterns such as ultrasensitivity or non-competitive inhibition in the absence of mechanistic information. Second, when integrated into network models, these rules captured classic regulatory patterns such as product-induced feedback inhibition. Lastly, we showed, at least for the network architectures considered here, that we could simultaneously estimate kinetic parameters and allosteric connectivity from synthetic data starting from an unbiased collection of possible allosteric structures using particle swarm optimization. However, when starting with an initial population that was heavily enriched with incorrect structures, our particle swarm approach could converge

  8. SABIO-RK: A data warehouse for biochemical reactions and their kinetics

    Directory of Open Access Journals (Sweden)

    Krebs Olga

    2007-03-01

    Full Text Available Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions have great and promising application potential but require reliable kinetic data. In order to support the systems biology community with such data we have developed SABIO-RK (System for the Analysis of Biochemical Pathways - Reaction Kinetics, a curated database with information about biochemical reactions and their kinetic properties, which allows researchers to obtain and compare kinetic data and to integrate them into models of biochemical networks. SABIO-RK is freely available for academic use at http://sabio.villa-bosch.de/SABIORK/.

  9. Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions.

    Science.gov (United States)

    Kügler, Philipp; Yang, Wei

    2014-06-01

    Model building of biochemical reaction networks typically involves experiments in which changes in the behavior due to natural or experimental perturbations are observed. Computational models of reaction networks are also used in a systems biology approach to study how transitions from a healthy to a diseased state result from changes in genetic or environmental conditions. In this paper we consider the nonlinear inverse problem of inferring information about the Jacobian of a Langevin type network model from covariance data of steady state concentrations associated to two different experimental conditions. Under idealized assumptions on the Langevin fluctuation matrices we prove that relative alterations in the network Jacobian can be uniquely identified when comparing the two data sets. Based on this result and the premise that alteration is locally confined to separable parts due to network modularity we suggest a computational approach using hybrid stochastic-deterministic optimization for the detection of perturbations in the network Jacobian using the sparsity promoting effect of [Formula: see text]-penalization. Our approach is illustrated by means of published metabolomic and signaling reaction networks.

  10. Fault Ride-Through of a Grid-connected Photovoltaic System with Quasi Z Source Inverter

    DEFF Research Database (Denmark)

    Al-Durra, Ahmed; Fayyad, Yara; Muyeen, S.M.

    2016-01-01

    This article presents fault ride-through schemes for a three-phase quasi Z source single-stage photovoltaic (PV) inverter that is connected to the grid after the distribution network. The quasi Z source inverter employs a unique LC network to couple the inverter main circuit to the input of the PV...... the grid side so that the grid fault ride-through requirements can be fulfilled. Scheme A involves control modification in the system; Schemes B and C involve hardware modification in the circuit topology by adding a chopper circuit across the DC link in Scheme B and across the quasi Z source inverter...

  11. Ionospheric feedback effects on the quasi-stationary coupling between LLBL and postnoon/evening discrete auroral arcs

    Directory of Open Access Journals (Sweden)

    M. M. Echim

    2008-05-01

    Full Text Available We discuss a model for the quasi-stationary coupling between magnetospheric sheared flows in the dusk sector and discrete auroral arcs, previously analyzed for the case of a uniform height-integrated Pedersen conductivity (ΣP. Here we introduce an ionospheric feedback as the variation of ΣP with the energy flux of precipitating magnetospheric electrons (εem. One key-component of the model is the kinetic description of the interface between the duskward LLBL and the plasma sheet that gives the profile of Φm, the magnetospheric electrostatic potential. The velocity shear in the dusk LLBL plays the role of a generator for the auroral circuit closing through Pedersen currents in the auroral ionosphere. The field-aligned current density, j||, and the energy flux of precipitating electrons are given by analytic functions of the field-aligned potential drop, ΔΦ, derived from standard kinetic models of the adiabatic motion of particles. The ionospheric electrostatic potential, Φi (and implicitely ΔΦ is determined from the current continuity equation in the ionosphere. We obtain values of ΔΦ of the order of kilovolt and of j|| of the order of tens of μA/m2 in thin regions of the order of several kilometers at 200 km altitude. The spatial scale is significantly smaller and the peak values of ΔΦ, j|| and εem are higher than in the case of a uniform ΣP. Effects on the postnoon/evening auroral arc electrodynamics due to variations of dusk LLBL and solar wind dynamic and kinetic pressure are discussed. In thin regions (of the order of kilometer embedding the maximum of ΔΦ we evidence a non-linear regime of the current-voltage relationship. The model predicts also that visible arcs form when the velocity shear in LLBL is above a threshold value depending on the generator and

  12. Contribution to an effective design method for stationary reaction-diffusion patterns

    International Nuclear Information System (INIS)

    Szalai, István; Horváth, Judit; De Kepper, Patrick

    2015-01-01

    The British mathematician Alan Turing predicted, in his seminal 1952 publication, that stationary reaction-diffusion patterns could spontaneously develop in reacting chemical or biochemical solutions. The first two clear experimental demonstrations of such a phenomenon were not made before the early 1990s when the design of new chemical oscillatory reactions and appropriate open spatial chemical reactors had been invented. Yet, the number of pattern producing reactions had not grown until 2009 when we developed an operational design method, which takes into account the feeding conditions and other specificities of real open spatial reactors. Since then, on the basis of this method, five additional reactions were shown to produce stationary reaction-diffusion patterns. To gain a clearer view on where our methodical approach on the patterning capacity of a reaction stands, numerical studies in conditions that mimic true open spatial reactors were made. In these numerical experiments, we explored the patterning capacity of Rabai's model for pH driven Landolt type reactions as a function of experimentally attainable parameters that control the main time and length scales. Because of the straightforward reversible binding of protons to carboxylate carrying polymer chains, this class of reaction is at the base of the chemistry leading to most of the stationary reaction-diffusion patterns presently observed. We compare our model predictions with experimental observations and comment on agreements and differences

  13. Contribution to an effective design method for stationary reaction-diffusion patterns

    Energy Technology Data Exchange (ETDEWEB)

    Szalai, István; Horváth, Judit [Laboratory of Nonlinear Chemical Dynamics, Institute of Chemistry, Eötvös Loránd University, P.O. Box 32, H-1518 Budapest 112 (Hungary); De Kepper, Patrick [Centre de Recherche Paul Pascal, CNRS, University of Bordeaux, 115, Avenue Schweitzer, F-33600 Pessac (France)

    2015-06-15

    The British mathematician Alan Turing predicted, in his seminal 1952 publication, that stationary reaction-diffusion patterns could spontaneously develop in reacting chemical or biochemical solutions. The first two clear experimental demonstrations of such a phenomenon were not made before the early 1990s when the design of new chemical oscillatory reactions and appropriate open spatial chemical reactors had been invented. Yet, the number of pattern producing reactions had not grown until 2009 when we developed an operational design method, which takes into account the feeding conditions and other specificities of real open spatial reactors. Since then, on the basis of this method, five additional reactions were shown to produce stationary reaction-diffusion patterns. To gain a clearer view on where our methodical approach on the patterning capacity of a reaction stands, numerical studies in conditions that mimic true open spatial reactors were made. In these numerical experiments, we explored the patterning capacity of Rabai's model for pH driven Landolt type reactions as a function of experimentally attainable parameters that control the main time and length scales. Because of the straightforward reversible binding of protons to carboxylate carrying polymer chains, this class of reaction is at the base of the chemistry leading to most of the stationary reaction-diffusion patterns presently observed. We compare our model predictions with experimental observations and comment on agreements and differences.

  14. Geometric universality of currents in an open network of interacting particles

    International Nuclear Information System (INIS)

    Sinitsyn, Nikolai A.; Chernyak, Vladimir Y.; Chertkov, Michael

    2010-01-01

    We discuss a non-equilibrium statistical system on a graph or network. Identical particles are injected, interact with each other, traverse, and leave the graph in a stochastic manner described in terms of Poisson rates, possibly dependent on time and instantaneous occupation numbers at the nodes of the graph. We show that under the assumption of the relative rates constancy, the system demonstrates a profound statistical symmetry, resulting in geometric universality of the particle currents statistics. The phenomenon applies broadly to many man-made and natural open stochastic systems, such as queuing of packages over internet, transport of electrons and quasi-particles in mesoscopic systems, and chains of reactions in bio-chemical networks. We illustrate the utility of the general approach using two enabling examples from the two latter disciplines.

  15. Pressure prediction model based on artificial neural network optimized by genetic algorithm and its application in quasi-static calibration of piezoelectric high-pressure sensor.

    Science.gov (United States)

    Gu, Tingwei; Kong, Deren; Jiang, Jian; Shang, Fei; Chen, Jing

    2016-12-01

    This paper applies back propagation neural network (BPNN) optimized by genetic algorithm (GA) for the prediction of pressure generated by a drop-weight device and the quasi-static calibration of piezoelectric high-pressure sensors for the measurement of propellant powder gas pressure. The method can effectively overcome the slow convergence and local minimum problems of BPNN. Based on test data of quasi-static comparison calibration method, a mathematical model between each parameter of drop-weight device and peak pressure and pulse width was established, through which the practical quasi-static calibration without continuously using expensive reference sensors could be realized. Compared with multiple linear regression method, the GA-BPNN model has higher prediction accuracy and stability. The percentages of prediction error of peak pressure and pulse width are less than 0.7% and 0.3%, respectively.

  16. Response analysis of a class of quasi-linear systems with fractional derivative excited by Poisson white noise

    Science.gov (United States)

    Yang, Yongge; Xu, Wei; Yang, Guidong; Jia, Wantao

    2016-08-01

    The Poisson white noise, as a typical non-Gaussian excitation, has attracted much attention recently. However, little work was referred to the study of stochastic systems with fractional derivative under Poisson white noise excitation. This paper investigates the stationary response of a class of quasi-linear systems with fractional derivative excited by Poisson white noise. The equivalent stochastic system of the original stochastic system is obtained. Then, approximate stationary solutions are obtained with the help of the perturbation method. Finally, two typical examples are discussed in detail to demonstrate the effectiveness of the proposed method. The analysis also shows that the fractional order and the fractional coefficient significantly affect the responses of the stochastic systems with fractional derivative.

  17. Response analysis of a class of quasi-linear systems with fractional derivative excited by Poisson white noise

    International Nuclear Information System (INIS)

    Yang, Yongge; Xu, Wei; Yang, Guidong; Jia, Wantao

    2016-01-01

    The Poisson white noise, as a typical non-Gaussian excitation, has attracted much attention recently. However, little work was referred to the study of stochastic systems with fractional derivative under Poisson white noise excitation. This paper investigates the stationary response of a class of quasi-linear systems with fractional derivative excited by Poisson white noise. The equivalent stochastic system of the original stochastic system is obtained. Then, approximate stationary solutions are obtained with the help of the perturbation method. Finally, two typical examples are discussed in detail to demonstrate the effectiveness of the proposed method. The analysis also shows that the fractional order and the fractional coefficient significantly affect the responses of the stochastic systems with fractional derivative.

  18. Response analysis of a class of quasi-linear systems with fractional derivative excited by Poisson white noise

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Yongge; Xu, Wei, E-mail: weixu@nwpu.edu.cn; Yang, Guidong; Jia, Wantao [Department of Applied Mathematics, Northwestern Polytechnical University, Xi' an 710072 (China)

    2016-08-15

    The Poisson white noise, as a typical non-Gaussian excitation, has attracted much attention recently. However, little work was referred to the study of stochastic systems with fractional derivative under Poisson white noise excitation. This paper investigates the stationary response of a class of quasi-linear systems with fractional derivative excited by Poisson white noise. The equivalent stochastic system of the original stochastic system is obtained. Then, approximate stationary solutions are obtained with the help of the perturbation method. Finally, two typical examples are discussed in detail to demonstrate the effectiveness of the proposed method. The analysis also shows that the fractional order and the fractional coefficient significantly affect the responses of the stochastic systems with fractional derivative.

  19. Quasi-equilibria in reduced Liouville spaces.

    Science.gov (United States)

    Halse, Meghan E; Dumez, Jean-Nicolas; Emsley, Lyndon

    2012-06-14

    The quasi-equilibrium behaviour of isolated nuclear spin systems in full and reduced Liouville spaces is discussed. We focus in particular on the reduced Liouville spaces used in the low-order correlations in Liouville space (LCL) simulation method, a restricted-spin-space approach to efficiently modelling the dynamics of large networks of strongly coupled spins. General numerical methods for the calculation of quasi-equilibrium expectation values of observables in Liouville space are presented. In particular, we treat the cases of a time-independent Hamiltonian, a time-periodic Hamiltonian (with and without stroboscopic sampling) and powder averaging. These quasi-equilibrium calculation methods are applied to the example case of spin diffusion in solid-state nuclear magnetic resonance. We show that there are marked differences between the quasi-equilibrium behaviour of spin systems in the full and reduced spaces. These differences are particularly interesting in the time-periodic-Hamiltonian case, where simulations carried out in the reduced space demonstrate ergodic behaviour even for small spins systems (as few as five homonuclei). The implications of this ergodic property on the success of the LCL method in modelling the dynamics of spin diffusion in magic-angle spinning experiments of powders is discussed.

  20. Plasma dynamics with second and third-harmonic ECRH and access to quasi-stationary ELM-free H-mode on TCV

    International Nuclear Information System (INIS)

    Porte, L.; Coda, S.; Alberti, S.; Arnoux, G.; Blanchard, P.; Bortolon, A.; Fasoli, A.; Goodman, T.P.; Klimanov, Y.; Martin, Y.; Maslov, M.; Scarabosio, A.; Weisen, H.

    2007-01-01

    Intense electron cyclotron resonance heating (ECRH) and electron cyclotron current drive (ECCD) are employed on the Tokamak a Configuration Variable (TCV) both in second- and third-harmonic X-mode (X2 and X3). The plasma behaviour under such conditions is driven largely by the electron dynamics, motivating extensive studies of the heating and relaxation phenomena governing both the thermal and suprathermal electron populations. In particular, the dynamics of suprathermal electrons are intimately tied to the physics of X2 ECCD. ECRH is also a useful tool for manipulating the electron distribution function in both physical and velocity space. Fundamental studies of the energetic electron dynamics have been performed using periodic, low-duty-cycle bursts of ECRH, with negligible average power injection, and with electron cyclotron emission (ECE). The characteristic times of the dynamical evolution are clearly revealed. Suprathermal electrons have also been shown to affect the absorption of X3 radiation. Thermal electrons play a crucial role in high density plasmas where indirect ion heating can be achieved through ion-electron collisions. In recent experiments ∼ 1.35 MW of vertically launched X3 ECRH was coupled to a diverted ELMy H-mode plasma. In cases where ≥ 1.1 MW of ECRH power was coupled, the discharge was able to transition into a quasi-stationary ELM-free H-mode regime. These H-modes operated at β N ∼ 2, n-bar e /n G approx. 0.25 and had high energy confinement, H IPB98(y,2) up to ∼ 1.6. Despite being purely electron heated and having no net particle source these discharges maintained a density peaking factor (n e,o /(n e ) ∼ 1.6). They also exhibited spontaneous toroidal momentum production in the co-current direction. The momentum production is due to a transport process as there is no external momentum input. This process supports little or no radial gradient of the toroidal velocity

  1. Bifurcation analysis of an aerodynamic journal bearing system considering the effect of stationary herringbone grooves

    International Nuclear Information System (INIS)

    Wang, C.-C.

    2007-01-01

    This paper investigates the bifurcation and nonlinear behavior of an aerodynamic journal bearing system taking into account the effect of stationary herringbone grooves. A finite difference method based on the successive over relation approach is employed to solve the Reynolds' equation. The analysis reveals a complex dynamical behavior comprising periodic and quasi-periodic responses of the rotor center. The dynamic behavior of the bearing system varies with changes in the bearing number and rotor mass. The results of this study provide a better understanding of the nonlinear dynamics of aerodynamic grooved journal bearing systems

  2. Purification and biochemical characterization of the haloalkaliphilic archaeon Natronococcus occultus extracellular serine protease

    DEFF Research Database (Denmark)

    Studdert, C A; Herrera Seitz, M K; Plasencia, I

    2001-01-01

    A serine protease was purified from Natronococcus occultus stationary phase culture medium (328-fold, yield 19%) and characterized at the biochemical level. The enzyme has a native molecular mass of 130 kDa, has chymotrypsin-like activity, is stable and active in a broad pH range (5.5-12), is rat......A serine protease was purified from Natronococcus occultus stationary phase culture medium (328-fold, yield 19%) and characterized at the biochemical level. The enzyme has a native molecular mass of 130 kDa, has chymotrypsin-like activity, is stable and active in a broad pH range (5.......5-12), is rather thermophilic (optimal activity at 60 degrees C in 1-2 M NaCl) and is dependent on high salt concentrations for activity and stability (1-2 M NaCl or KCl). Polyclonal antibodies were raised against the purified protease. In Western blots, they presented no cross-reactivity with culture medium from...... other halobacteria nor with commercial proteases except subtilisin. The amino acid sequences of three tryptic peptides obtained from Natronococcus occultus protease did not show significant similarity to other known proteolytic enzymes. This fact, in addition to its high molecular mass suggests...

  3. Transient selection in multicellular immune networks

    Science.gov (United States)

    Ivanchenko, M. V.

    2011-03-01

    We analyze the dynamics of a multi-clonotype naive T-cell population competing for survival signals from antigen-presenting cells. We find that this competition provides with an efficacious selection of clonotypes, making the less able and more repetitive get extinct. We uncover the scaling principles for large systems the extinction rate obeys and calibrate the model parameters to their experimental counterparts. For the first time, we estimate the physiological values of the T-cell receptor-antigen presentation profile recognition probability and T-cell clonotypes niche overlap. We demonstrate that, while the ultimate state is a stable fixed point, sequential transients dominate the dynamics over large timescales that may span over years, if not decades, in real time. We argue that what is currently viewed as "homeostasis" is a complex sequential transient process, while being quasi-stationary in the total number of T-cells only. The discovered type of sequential transient dynamics in large random networks is a novel alternative to the stable heteroclinic channel mechanism.

  4. On structural identifiability analysis of the cascaded linear dynamic systems in isotopically non-stationary 13C labelling experiments.

    Science.gov (United States)

    Lin, Weilu; Wang, Zejian; Huang, Mingzhi; Zhuang, Yingping; Zhang, Siliang

    2018-06-01

    The isotopically non-stationary 13C labelling experiments, as an emerging experimental technique, can estimate the intracellular fluxes of the cell culture under an isotopic transient period. However, to the best of our knowledge, the issue of the structural identifiability analysis of non-stationary isotope experiments is not well addressed in the literature. In this work, the local structural identifiability analysis for non-stationary cumomer balance equations is conducted based on the Taylor series approach. The numerical rank of the Jacobian matrices of the finite extended time derivatives of the measured fractions with respect to the free parameters is taken as the criterion. It turns out that only one single time point is necessary to achieve the structural identifiability analysis of the cascaded linear dynamic system of non-stationary isotope experiments. The equivalence between the local structural identifiability of the cascaded linear dynamic systems and the local optimum condition of the nonlinear least squares problem is elucidated in the work. Optimal measurements sets can then be determined for the metabolic network. Two simulated metabolic networks are adopted to demonstrate the utility of the proposed method. Copyright © 2018 Elsevier Inc. All rights reserved.

  5. The Stationary-Phase Cells of Saccharomyces cerevisiae Display Dynamic Actin Filaments Required for Processes Extending Chronological Life Span.

    Science.gov (United States)

    Vasicova, Pavla; Lejskova, Renata; Malcova, Ivana; Hasek, Jiri

    2015-11-01

    Stationary-growth-phase Saccharomyces cerevisiae yeast cultures consist of nondividing cells that undergo chronological aging. For their successful survival, the turnover of proteins and organelles, ensured by autophagy and the activation of mitochondria, is performed. Some of these processes are engaged in by the actin cytoskeleton. In S. cerevisiae stationary-phase cells, F actin has been shown to form static aggregates named actin bodies, subsequently cited to be markers of quiescence. Our in vivo analyses revealed that stationary-phase cultures contain cells with dynamic actin filaments, besides the cells with static actin bodies. The cells with dynamic actin displayed active endocytosis and autophagy and well-developed mitochondrial networks. Even more, stationary-phase cell cultures grown under calorie restriction predominantly contained cells with actin cables, confirming that the presence of actin cables is linked to successful adaptation to stationary phase. Cells with actin bodies were inactive in endocytosis and autophagy and displayed aberrations in mitochondrial networks. Notably, cells of the respiratory activity-deficient cox4Δ strain displayed the same mitochondrial aberrations and actin bodies only. Additionally, our results indicate that mitochondrial dysfunction precedes the formation of actin bodies and the appearance of actin bodies corresponds to decreased cell fitness. We conclude that the F-actin status reflects the extent of damage that arises from exponential growth. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  6. Finding quasi-optimal network topologies for information transmission in active networks.

    Science.gov (United States)

    Baptista, Murilo S; de Carvalho, Josué X; Hussein, Mahir S

    2008-01-01

    This work clarifies the relation between network circuit (topology) and behaviour (information transmission and synchronization) in active networks, e.g. neural networks. As an application, we show how one can find network topologies that are able to transmit a large amount of information, possess a large number of communication channels, and are robust under large variations of the network coupling configuration. This theoretical approach is general and does not depend on the particular dynamic of the elements forming the network, since the network topology can be determined by finding a Laplacian matrix (the matrix that describes the connections and the coupling strengths among the elements) whose eigenvalues satisfy some special conditions. To illustrate our ideas and theoretical approaches, we use neural networks of electrically connected chaotic Hindmarsh-Rose neurons.

  7. Finding quasi-optimal network topologies for information transmission in active networks.

    Directory of Open Access Journals (Sweden)

    Murilo S Baptista

    Full Text Available This work clarifies the relation between network circuit (topology and behaviour (information transmission and synchronization in active networks, e.g. neural networks. As an application, we show how one can find network topologies that are able to transmit a large amount of information, possess a large number of communication channels, and are robust under large variations of the network coupling configuration. This theoretical approach is general and does not depend on the particular dynamic of the elements forming the network, since the network topology can be determined by finding a Laplacian matrix (the matrix that describes the connections and the coupling strengths among the elements whose eigenvalues satisfy some special conditions. To illustrate our ideas and theoretical approaches, we use neural networks of electrically connected chaotic Hindmarsh-Rose neurons.

  8. A quasi steady state method for solving transient Darcy flow in complex 3D fractured networks accounting for matrix to fracture flow

    Science.gov (United States)

    Nœtinger, B.

    2015-02-01

    Modeling natural Discrete Fracture Networks (DFN) receives more and more attention in applied geosciences, from oil and gas industry, to geothermal recovery and aquifer management. The fractures may be either natural, or artificial in case of well stimulation. Accounting for the flow inside the fracture network, and accounting for the transfers between the matrix and the fractures, with the same level of accuracy is an important issue for calibrating the well architecture and for setting up optimal resources recovery strategies. Recently, we proposed an original method allowing to model transient pressure diffusion in the fracture network only [1]. The matrix was assumed to be impervious. A systematic approximation scheme was built, allowing to model the initial DFN by a set of N unknowns located at each identified intersection between fractures. The higher N, the higher the accuracy of the model. The main assumption was using a quasi steady state hypothesis, that states that the characteristic diffusion time over one single fracture is negligible compared with the characteristic time of the macroscopic problem, e.g. change of boundary conditions. In that context, the lowest order approximation N = 1 has the form of solving a transient problem in a resistor/capacitor network, a so-called pipe network. Its topology is the same as the network of geometrical intersections between fractures. In this paper, we generalize this approach in order to account for fluxes from matrix to fractures. The quasi steady state hypothesis at the fracture level is still kept. Then, we show that in the case of well separated time scales between matrix and fractures, the preceding model needs only to be slightly modified in order to incorporate these fluxes. The additional knowledge of the so-called matrix to fracture transfer function allows to modify the mass matrix that becomes a time convolution operator. This is reminiscent of existing space averaged transient dual porosity models.

  9. Projected Changes in Persistent Extreme Warm-Season Weather Events: The Role of Quasi-Resonant Amplification

    Science.gov (United States)

    Mann, M. E.; Rahmstorf, S.; Kornhuber, K.; Steinman, B. A.; Miller, S. K.; Coumou, D.

    2017-12-01

    Persistent episodes of extreme weather in the Northern Hemisphere summer are typically associated with high-amplitude quasi-stationary atmospheric Rossby waves with zonal wavenumbers. Such disturbances are favoured by the phenomenon of Quasi-Resonant Amplification (QRA). A fingerprint for the occurrence of QRA can be defined in terms of the zonally-averaged surface temperature field. Examining future state-of-the-art (CMIP5) climate model projections we find that such events are likely to increase by 50% over the next century under business-as-usual carbon emissions, but there is considerable variation among climate models, with some models predicting a near tripling of QRA events by the end of the century. These results are strongly dependent on assumptions regarding the prominence of changes in radiative forcing associated with anthropogenic aerosols over the next century.

  10. QUIPS: Time-dependent properties of quasi-invariant self-gravitating polytropes

    International Nuclear Information System (INIS)

    Munier, A.; Feix, M.R.

    1983-01-01

    Quasi-invariance, a method based on group tranformations, is used to obtain time-dependent solutions for the expansion and/or contraction of a self-gravitating sphere of perfect gas with polytopic index n. Quasi-invariance transforms the equations of hydrodynamics into ''dual equations'' exhibiting extra terms such as a friction, a mass source or sink term, and a centripetal/centrifugal force. The search for stationary solutions in this ''dual space'' leads to a new class of time-dependent solutions, the QUIP (for Quasi-invariant polytrope), which generalizes Emden's static model and introduces a characteristic frequency a related to Jean's frequency. The second order differential equation describing the solution is integrated numerically. A critical point is seen always to exist for nnot =3. Solutions corresponding in the ''dual space'' to a time-dependent generalization of Eddington's standard model (n = 3) are discussed. These solutions conserve both the total mass and the energy. A transition between closed and open structures is seen to take place at a particular frequency a/sub c/. For n = 3, no critical point arises in the ''dual space'' due to the self-similar motion of the fluid. A new time-dependent mass-radius relation and a generalized Betti-Ritter relation are obtained. Conclusions about the existence of a minimum Q-factor are presented

  11. Dynamical Structure of a Traditional Amazonian Social Network

    Directory of Open Access Journals (Sweden)

    Paul L. Hooper

    2013-11-01

    Full Text Available Reciprocity is a vital feature of social networks, but relatively little is known about its temporal structure or the mechanisms underlying its persistence in real world behavior. In pursuit of these two questions, we study the stationary and dynamical signals of reciprocity in a network of manioc beer (Spanish: chicha; Tsimane’: shocdye’ drinking events in a Tsimane’ village in lowland Bolivia. At the stationary level, our analysis reveals that social exchange within the community is heterogeneously patterned according to kinship and spatial proximity. A positive relationship between the frequencies at which two families host each other, controlling for kinship and proximity, provides evidence for stationary reciprocity. Our analysis of the dynamical structure of this network presents a novel method for the study of conditional, or non-stationary, reciprocity effects. We find evidence that short-timescale reciprocity (within three days is present among non- and distant-kin pairs; conversely, we find that levels of cooperation among close kin can be accounted for on the stationary hypothesis alone.

  12. Synthesis of Biochemical Applications on Digital Microfluidic Biochips with Operation Execution Time Variability

    DEFF Research Database (Denmark)

    Alistar, Mirela; Pop, Paul

    2015-01-01

    that each biochemical operation in an application is characterized by a worst-case execution time (wcet). However, during the execution of the application, due to variability and randomness in biochemical reactions, operations may finish earlier than their wcetswcets, resulting in unexploited slack...... in the schedule. In this paper, we first propose an online synthesis strategy that re-synthesizes the application at runtime when operations experience variability in their execution time, exploiting thus the slack to obtain shorter application completion times. We also propose a quasi-static synthesis strategy...... approaches have been proposed for the synthesis of digital microfluidic biochips, which, starting from a biochemical application and a given biochip architecture, determine the allocation, resource binding, scheduling, placement and routing of the operations in the application. Researchers have assumed...

  13. Financial time series prediction using spiking neural networks.

    Science.gov (United States)

    Reid, David; Hussain, Abir Jaafar; Tawfik, Hissam

    2014-01-01

    In this paper a novel application of a particular type of spiking neural network, a Polychronous Spiking Network, was used for financial time series prediction. It is argued that the inherent temporal capabilities of this type of network are suited to non-stationary data such as this. The performance of the spiking neural network was benchmarked against three systems: two "traditional", rate-encoded, neural networks; a Multi-Layer Perceptron neural network and a Dynamic Ridge Polynomial neural network, and a standard Linear Predictor Coefficients model. For this comparison three non-stationary and noisy time series were used: IBM stock data; US/Euro exchange rate data, and the price of Brent crude oil. The experiments demonstrated favourable prediction results for the Spiking Neural Network in terms of Annualised Return and prediction error for 5-Step ahead predictions. These results were also supported by other relevant metrics such as Maximum Drawdown and Signal-To-Noise ratio. This work demonstrated the applicability of the Polychronous Spiking Network to financial data forecasting and this in turn indicates the potential of using such networks over traditional systems in difficult to manage non-stationary environments.

  14. Traveling and Pinned Fronts in Bistable Reaction-Diffusion Systems on Networks

    Science.gov (United States)

    Kouvaris, Nikos E.; Kori, Hiroshi; Mikhailov, Alexander S.

    2012-01-01

    Traveling fronts and stationary localized patterns in bistable reaction-diffusion systems have been broadly studied for classical continuous media and regular lattices. Analogs of such non-equilibrium patterns are also possible in networks. Here, we consider traveling and stationary patterns in bistable one-component systems on random Erdös-Rényi, scale-free and hierarchical tree networks. As revealed through numerical simulations, traveling fronts exist in network-organized systems. They represent waves of transition from one stable state into another, spreading over the entire network. The fronts can furthermore be pinned, thus forming stationary structures. While pinning of fronts has previously been considered for chains of diffusively coupled bistable elements, the network architecture brings about significant differences. An important role is played by the degree (the number of connections) of a node. For regular trees with a fixed branching factor, the pinning conditions are analytically determined. For large Erdös-Rényi and scale-free networks, the mean-field theory for stationary patterns is constructed. PMID:23028746

  15. Variational and quasi-variational inequalities in mechanics

    CERN Document Server

    Kravchuk, Alexander S

    2007-01-01

    The essential aim of the present book is to consider a wide set of problems arising in the mathematical modelling of mechanical systems under unilateral constraints. In these investigations elastic and non-elastic deformations, friction and adhesion phenomena are taken into account. All the necessary mathematical tools are given: local boundary value problem formulations, construction of variational equations and inequalities, and the transition to minimization problems, existence and uniqueness theorems, and variational transformations (Friedrichs and Young-Fenchel-Moreau) to dual and saddle-point search problems. Important new results concern contact problems with friction. The Coulomb friction law and some others are considered, in which relative sliding velocities appear. The corresponding quasi-variational inequality is constructed, as well as the appropriate iterative method for its solution. Outlines of the variational approach to non-stationary and dissipative systems and to the construction of the go...

  16. Theory of control of the dynamics of the interface between stationary and flying qubits

    International Nuclear Information System (INIS)

    Yao Wang; Liu Renbao; Sham, L J

    2005-01-01

    We present a scheme of control for the arbitrary interplay between a stationary qubit and a flying qubit (carried by a single-photon wavepacket) at a quantum interface composed of a three-level system coupled to a continuum through a cavity. It can be used for generation or reception of an arbitrarily shaped single-photon wavepacket. The generation process can also be controlled to create entanglement between the stationary qubit and flying qubit. The generation and reception operation can be combined to perform quantum network operations such as transfer, swap and entanglement creation for qubits at distant nodes

  17. Development of a low cost medium for Tetraselmis sp. growth and biochemical profile improvement

    Directory of Open Access Journals (Sweden)

    Catarina Rosado Correia

    2014-06-01

    Full Text Available In aquaculture, food quality improvement – especially microalgae – is mandatory. Despite having many applications in this industry, few genera of microalgae are actively used and exploited, mainly because of its lack of requirements, such as digestibility, size and lack of toxicity. Tetraselmis sp. is one of the most commonly used microalgae on aquaculture. Despite their nutritional profile, this is a highly demanding industry that requires constant improvement concerning cost production and productivity, and a biochemical profile for end usage. Improvements can be achieved through culture condition manipulation, changing, for instance, culture media’s composition. In order to achieve better biochemical profiles, productivity and lower production costs, three mediums were tested – NutriBloom [NB] (commercial medium used at Necton’s facilities, Simplex [S] (no addition of iron or any micronutrient and Sea Mineral Solution [SMS], and Tetraselmis’s level of protein, carbohydrates, total lipid and PUFA’s profile were controlled at logarithmic and stationary phase, using classical techniques, according to Lowry (1951, Dubois (1956, Bligh and Dyer (1959 and Lepage & Roy (1986. SMS revealed better results than the others, achieving higher cell numbers, productivity and less duplication time. In logarithmic phase, this medium also had the higher lipid and PUFAs percentage. S medium showed higher protein content. In stationary phase, NB medium presented more proteins, lipid and sugars. S medium had better PUFAs percentage. Differences between micronutrient concentrations explain the verified variations in microalgae’s biochemical profile, developing a low-cost medium for Tetraselmis sp. culture.

  18. Stationary and non-stationary extreme value modeling of extreme temperature in Malaysia

    Science.gov (United States)

    Hasan, Husna; Salleh, Nur Hanim Mohd; Kassim, Suraiya

    2014-09-01

    Extreme annual temperature of eighteen stations in Malaysia is fitted to the Generalized Extreme Value distribution. Stationary and non-stationary models with trend are considered for each station and the Likelihood Ratio test is used to determine the best-fitting model. Results show that three out of eighteen stations i.e. Bayan Lepas, Labuan and Subang favor a model which is linear in the location parameter. A hierarchical cluster analysis is employed to investigate the existence of similar behavior among the stations. Three distinct clusters are found in which one of them consists of the stations that favor the non-stationary model. T-year estimated return levels of the extreme temperature are provided based on the chosen models.

  19. Conduction in rectangular quasi-one-dimensional and two-dimensional random resistor networks away from the percolation threshold.

    Science.gov (United States)

    Kiefer, Thomas; Villanueva, Guillermo; Brugger, Jürgen

    2009-08-01

    In this study we investigate electrical conduction in finite rectangular random resistor networks in quasione and two dimensions far away from the percolation threshold p(c) by the use of a bond percolation model. Various topologies such as parallel linear chains in one dimension, as well as square and triangular lattices in two dimensions, are compared as a function of the geometrical aspect ratio. In particular we propose a linear approximation for conduction in two-dimensional systems far from p(c), which is useful for engineering purposes. We find that the same scaling function, which can be used for finite-size scaling of percolation thresholds, also applies to describe conduction away from p(c). This is in contrast to the quasi-one-dimensional case, which is highly nonlinear. The qualitative analysis of the range within which the linear approximation is legitimate is given. A brief link to real applications is made by taking into account a statistical distribution of the resistors in the network. Our results are of potential interest in fields such as nanostructured or composite materials and sensing applications.

  20. Climatic feedbacks between stationary and transient eddies

    International Nuclear Information System (INIS)

    Branscome, L.E.

    1994-01-01

    Stationary eddies make a significant contribution to poleward heat transport during Northern Hemisphere winter, equaling the transport by transient eddies. On the other hand, stationary eddy transport during the summer is negligible. The effect of topography on time-mean stationary waves and low-frequency variability has been widely studied. In contrast, little attention has been given to the climatic feedbacks associated with stationary eddies. Furthermore, the relationship between stationary and transient eddies in the context of global and regional climate is not well understood. The response of the climate system to anthropogenic forcing is likely to have some dependence on stationary wave transport and its interaction with transient eddies. Some early GCM simulations and observational analyses indicate a strong feedback between the meridional heat fluxes of stationary and transient eddies

  1. Quasi-Optical Network Analyzers and High-Reliability RF MEMS Switched Capacitors

    Science.gov (United States)

    Grichener, Alexander

    The thesis first presents a 2-port quasi-optical scalar network analyzer consisting of a transmitter and receiver both built in planar technology. The network analyzer is based on a Schottky-diode mixer integrated inside a planar antenna and fed differentially by a CPW transmission line. The antenna is placed on an extended hemispherical high-resistivity silicon substrate lens. The LO signal is swept from 3-5 GHz and high-order harmonic mixing in both up- and down- conversion mode is used to realize the 15-50 GHz RF bandwidth. The network analyzer resulted in a dynamic range of greater than 40 dB and was successfully used to measure a frequency selective surface with a second-order bandpass response. Furthermore, the system was built with circuits and components for easy scaling to millimeter-wave frequencies which is the primary motivation for this work. The application areas for a millimeter and submillimeter-wave network analyzer include material characterization and art diagnostics. The second project presents several RF MEMS switched capacitors designed for high-reliability operation and suitable for tunable filters and reconfigurable networks. The first switched-capacitor resulted in a digital capacitance ratio of 5 and an analog capacitance ratio of 5-9. The analog tuning of the down-state capacitance is enhanced by a positive vertical stress gradient in the the beam, making it ideal for applications that require precision tuning. A thick electroplated beam resulted in Q greater than 100 at C to X-band frequencies, and power handling of 0.6-1.1 W. The design also minimized charging in the dielectric, resulting in excellent reliability performance even under hot-switched and high power (1 W) conditions. The second switched-capacitor was designed without any dielectric to minimize charging. The device was hot-switched at 1 W of RF power for greater than 11 billion cycles with virtually no change in the C-V curve. The final project presents a 7-channel

  2. Random walk centrality for temporal networks

    International Nuclear Information System (INIS)

    Rocha, Luis E C; Masuda, Naoki

    2014-01-01

    Nodes can be ranked according to their relative importance within a network. Ranking algorithms based on random walks are particularly useful because they connect topological and diffusive properties of the network. Previous methods based on random walks, for example the PageRank, have focused on static structures. However, several realistic networks are indeed dynamic, meaning that their structure changes in time. In this paper, we propose a centrality measure for temporal networks based on random walks under periodic boundary conditions that we call TempoRank. It is known that, in static networks, the stationary density of the random walk is proportional to the degree or the strength of a node. In contrast, we find that, in temporal networks, the stationary density is proportional to the in-strength of the so-called effective network, a weighted and directed network explicitly constructed from the original sequence of transition matrices. The stationary density also depends on the sojourn probability q, which regulates the tendency of the walker to stay in the node, and on the temporal resolution of the data. We apply our method to human interaction networks and show that although it is important for a node to be connected to another node with many random walkers (one of the principles of the PageRank) at the right moment, this effect is negligible in practice when the time order of link activation is included. (paper)

  3. Random walk centrality for temporal networks

    Science.gov (United States)

    Rocha, Luis E. C.; Masuda, Naoki

    2014-06-01

    Nodes can be ranked according to their relative importance within a network. Ranking algorithms based on random walks are particularly useful because they connect topological and diffusive properties of the network. Previous methods based on random walks, for example the PageRank, have focused on static structures. However, several realistic networks are indeed dynamic, meaning that their structure changes in time. In this paper, we propose a centrality measure for temporal networks based on random walks under periodic boundary conditions that we call TempoRank. It is known that, in static networks, the stationary density of the random walk is proportional to the degree or the strength of a node. In contrast, we find that, in temporal networks, the stationary density is proportional to the in-strength of the so-called effective network, a weighted and directed network explicitly constructed from the original sequence of transition matrices. The stationary density also depends on the sojourn probability q, which regulates the tendency of the walker to stay in the node, and on the temporal resolution of the data. We apply our method to human interaction networks and show that although it is important for a node to be connected to another node with many random walkers (one of the principles of the PageRank) at the right moment, this effect is negligible in practice when the time order of link activation is included.

  4. The formation of quasi-alicyclic rings in alkyl-aromatic compounds

    Science.gov (United States)

    Straka, Pavel; Buryan, Petr; Bičáková, Olga

    2018-02-01

    The alkyl side chains of n-alkyl phenols, n-alkyl benzenes and n-alkyl naphthalenes are cyclised, as demonstrated by GC measurements, FTIR spectroscopy and molecular mechanics calculations. Cyclisation occurs due to the intramolecular interaction between an aromatic ring (-δ) and a hydrogen of the terminal methyl group (+δ) of an alkyl chain. In fact, conventional molecules are not aliphatic-aromatic, but quasi-alicyclic-aromatic. With the aromatic molecules formed with a quasi-alicyclic ring, the effect of van der Waals attractive forces increases not only intramolecularly but also intermolecularly. This effect is strong in molecules with propyl and higher alkyl substituents. The increase of intermolecular van der Waals attractive forces results in bi-linearity in the GC retention time of the compounds in question, observed in the dependence of the logarithm of the relative retention time on the number of carbons in a molecule in both polar and nonpolar stationary phases with both capillary and packed columns. The role of van der Waals forces has been demonstrated using the potential energies of covalent and noncovalent interactions for 2-n-alkyl phenols, n-alkyl benzenes and 1-n-alkyl- and 2-n-alkyl naphthalenes.

  5. Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs

    LENUS (Irish Health Repository)

    Casey, Fergal

    2011-08-22

    Abstract Background Gene and protein interactions are commonly represented as networks, with the genes or proteins comprising the nodes and the relationship between them as edges. Motifs, or small local configurations of edges and nodes that arise repeatedly, can be used to simplify the interpretation of networks. Results We examined triplet motifs in a network of quantitative epistatic genetic relationships, and found a non-random distribution of particular motif classes. Individual motif classes were found to be associated with different functional properties, suggestive of an underlying biological significance. These associations were apparent not only for motif classes, but for individual positions within the motifs. As expected, NNN (all negative) motifs were strongly associated with previously reported genetic (i.e. synthetic lethal) interactions, while PPP (all positive) motifs were associated with protein complexes. The two other motif classes (NNP: a positive interaction spanned by two negative interactions, and NPP: a negative spanned by two positives) showed very distinct functional associations, with physical interactions dominating for the former but alternative enrichments, typical of biochemical pathways, dominating for the latter. Conclusion We present a model showing how NNP motifs can be used to recognize supportive relationships between protein complexes, while NPP motifs often identify opposing or regulatory behaviour between a gene and an associated pathway. The ability to use motifs to point toward underlying biological organizational themes is likely to be increasingly important as more extensive epistasis mapping projects in higher organisms begin.

  6. Noise Diagnostics of Stationary and Non-Stationary Reactor Processes

    Energy Technology Data Exchange (ETDEWEB)

    Sunde, Carl

    2007-04-15

    This thesis concerns the application of noise diagnostics on different problems in the area of reactor physics involving both stationary and non-stationary core processes. Five different problems are treated, divided into three different parts. The first problem treated in the first part is the classification of two-phase flow regimes from neutron radiographic and visible light images with a neuro-wavelet algorithm. The algorithm consists of wavelet pre-processing and of an artificial neural network. The result indicates that the wavelet pre-processing is improving the training of the neural network. Next, detector tubes which are suspected of impacting on nearby fuel-assemblies in a boiling water reactor (BWR) are identified by both a classical spectral method and wavelet-based methods. It was found that there is good agreement between the different methods as well as with visual inspections of detector tube and fuel assembly damage made during the outage at the plant. The third problem addresses the determination of the decay ratio of a BWR from the auto-correlation function (ACF). Here wavelets are used, with some success, both for de-trending and de-nosing of the ACF and also for direct estimation of the decay ratio from the ACF. The second part deals with the analysis of beam-mode and shell-mode core-barrel vibrations in pressurised water reactors (PWRs). The beam-mode vibrations are analysed by using parameters of the vibration peaks, in spectra from ex core detectors. A trend analysis of the peak amplitude shows that the peak amplitude is changing during the fuel cycle. When it comes to the analysis of the shell-mode vibration, 1-D analytical and numerical calculations are performed in order to calculate the neutron noise induced in the core. The two calculations are in agreement and show that a large local noise component is present in the core which could be used to classify the shell-mode vibrations. However, a measurement made in the PWR Ringhals-3 shows

  7. Noise Diagnostics of Stationary and Non-Stationary Reactor Processes

    International Nuclear Information System (INIS)

    Sunde, Carl

    2007-01-01

    This thesis concerns the application of noise diagnostics on different problems in the area of reactor physics involving both stationary and non-stationary core processes. Five different problems are treated, divided into three different parts. The first problem treated in the first part is the classification of two-phase flow regimes from neutron radiographic and visible light images with a neuro-wavelet algorithm. The algorithm consists of wavelet pre-processing and of an artificial neural network. The result indicates that the wavelet pre-processing is improving the training of the neural network. Next, detector tubes which are suspected of impacting on nearby fuel-assemblies in a boiling water reactor (BWR) are identified by both a classical spectral method and wavelet-based methods. It was found that there is good agreement between the different methods as well as with visual inspections of detector tube and fuel assembly damage made during the outage at the plant. The third problem addresses the determination of the decay ratio of a BWR from the auto-correlation function (ACF). Here wavelets are used, with some success, both for de-trending and de-nosing of the ACF and also for direct estimation of the decay ratio from the ACF. The second part deals with the analysis of beam-mode and shell-mode core-barrel vibrations in pressurised water reactors (PWRs). The beam-mode vibrations are analysed by using parameters of the vibration peaks, in spectra from ex core detectors. A trend analysis of the peak amplitude shows that the peak amplitude is changing during the fuel cycle. When it comes to the analysis of the shell-mode vibration, 1-D analytical and numerical calculations are performed in order to calculate the neutron noise induced in the core. The two calculations are in agreement and show that a large local noise component is present in the core which could be used to classify the shell-mode vibrations. However, a measurement made in the PWR Ringhals-3 shows

  8. Integrating Carbon Nanotubes into Microfluidic Chip for Separating Biochemical Compounds

    DEFF Research Database (Denmark)

    Chen, Miaoxiang Max; Mogensen, Klaus Bo; Bøggild, Peter

    2012-01-01

    We present a new type of device to separate biochemical compounds wherein carbon nanotubes (CNTs) are integrated as chromatographic stationary phase. The CNTs were directly grown on the bottom of microfluidic channels on Si/SiO2 substrates by chemical vapor deposition (CVD). Acetylene was used...... as carbon source and Ni was employed as catalyst. For electrokinetic separations, higher electrical field strength is usually required; therefore, the CNTs were constructed in pillar-array-form by patterning the catalyst layer. Electrical field strength of 2.0 kV/cm has been realized, which is more than one...

  9. Network Completion for Static Gene Expression Data

    Directory of Open Access Journals (Sweden)

    Natsu Nakajima

    2014-01-01

    Full Text Available We tackle the problem of completing and inferring genetic networks under stationary conditions from static data, where network completion is to make the minimum amount of modifications to an initial network so that the completed network is most consistent with the expression data in which addition of edges and deletion of edges are basic modification operations. For this problem, we present a new method for network completion using dynamic programming and least-squares fitting. This method can find an optimal solution in polynomial time if the maximum indegree of the network is bounded by a constant. We evaluate the effectiveness of our method through computational experiments using synthetic data. Furthermore, we demonstrate that our proposed method can distinguish the differences between two types of genetic networks under stationary conditions from lung cancer and normal gene expression data.

  10. AUTOMATIC CONTROL OF PARAMETERS OF A NON-STATIONARY OBJECT WITH CROSS LINKS

    Directory of Open Access Journals (Sweden)

    A. Pavlov

    2018-04-01

    Full Text Available Many objects automatic control unsteady. This is manifested in the change of their parameters. Therefore, periodically adjust the required parameters of the controller. This work is usually carried out rarely. For a long time, regulators are working with is not the optimal settings. The consequence of this is the low quality of many industrial control systems. The solution problem is the use of robust controllers. ACS with traditional PI and PID controllers have a very limited range of normal operation modes due to the appearance of parametric disturbances due to changes in the characteristics of the automated unit and changes in the load on it. The situation is different when using in the architecture of artificial neural network controllers. It is known that when training a neural network, the adaptation procedure is often used. This makes it possible to greatly expand the area of normal operating modes of ACS with neural automatic regulators in comparison with traditional linear regulators. It is also possible to significantly improve the quality of control (especially for a non-stationary multidimensional object, provided that when designing the ACS at the stage of its simulation in the model of the regulatory object model, an adequate simulation model of the executive device. It is also possible to significantly improve the quality of control (especially for a non-stationary multidimensional regulatory object model, an adequate simulation model of the executive device. Especially actual implementation of all these requirements in the application of electric actuators. This article fully complies with these requirements. This is what makes it possible to provide a guaranteed quality of control in non-stationary ACS with multidimensional objects and cross-links between control channels. The possibility of using a known hybrid automatic regulator to stabilize the parameters of a two-channel non-stationary object with two cross-linked. A

  11. Patterns of Stochastic Behavior in Dynamically Unstable High-Dimensional Biochemical Networks

    Directory of Open Access Journals (Sweden)

    Simon Rosenfeld

    2009-01-01

    Full Text Available The question of dynamical stability and stochastic behavior of large biochemical networks is discussed. It is argued that stringent conditions of asymptotic stability have very little chance to materialize in a multidimensional system described by the differential equations of chemical kinetics. The reason is that the criteria of asymptotic stability (Routh- Hurwitz, Lyapunov criteria, Feinberg’s Deficiency Zero theorem would impose the limitations of very high algebraic order on the kinetic rates and stoichiometric coefficients, and there are no natural laws that would guarantee their unconditional validity. Highly nonlinear, dynamically unstable systems, however, are not necessarily doomed to collapse, as a simple Jacobian analysis would suggest. It is possible that their dynamics may assume the form of pseudo-random fluctuations quite similar to a shot noise, and, therefore, their behavior may be described in terms of Langevin and Fokker-Plank equations. We have shown by simulation that the resulting pseudo-stochastic processes obey the heavy-tailed Generalized Pareto Distribution with temporal sequence of pulses forming the set of constituent-specific Poisson processes. Being applied to intracellular dynamics, these properties are naturally associated with burstiness, a well documented phenomenon in the biology of gene expression.

  12. Novel family of quasi-Z-source DC/DC converters derived from current-fed push-pull converters

    DEFF Research Database (Denmark)

    Chub, Andrii; Husev, Oleksandr; Vinnikov, Dmitri

    2014-01-01

    This paper is devoted to the step-up quasi-Z-source dc/dc push-pull converter family. The topologies in the family are derived from the isolated boost converter family by replacing input inductors with the quasi-Z-source network. Two new topologies are proposed, analyzed and compared. Theoretical...

  13. Comparison of neural network applications for channel assignment in cellular TDMA networks and dynamically sectored PCS networks

    Science.gov (United States)

    Hortos, William S.

    1997-04-01

    The use of artificial neural networks (NNs) to address the channel assignment problem (CAP) for cellular time-division multiple access and code-division multiple access networks has previously been investigated by this author and many others. The investigations to date have been based on a hexagonal cell structure established by omnidirectional antennas at the base stations. No account was taken of the use of spatial isolation enabled by directional antennas to reduce interference between mobiles. Any reduction in interference translates into increased capacity and consequently alters the performance of the NNs. Previous studies have sought to improve the performance of Hopfield- Tank network algorithms and self-organizing feature map algorithms applied primarily to static channel assignment (SCA) for cellular networks that handle uniformly distributed, stationary traffic in each cell for a single type of service. The resulting algorithms minimize energy functions representing interference constraint and ad hoc conditions that promote convergence to optimal solutions. While the structures of the derived neural network algorithms (NNAs) offer the potential advantages of inherent parallelism and adaptability to changing system conditions, this potential has yet to be fulfilled the CAP for emerging mobile networks. The next-generation communication infrastructures must accommodate dynamic operating conditions. Macrocell topologies are being refined to microcells and picocells that can be dynamically sectored by adaptively controlled, directional antennas and programmable transceivers. These networks must support the time-varying demands for personal communication services (PCS) that simultaneously carry voice, data and video and, thus, require new dynamic channel assignment (DCA) algorithms. This paper examines the impact of dynamic cell sectoring and geometric conditioning on NNAs developed for SCA in omnicell networks with stationary traffic to improve the metrics

  14. Evidence for several dipolar quasi-invariants in liquid crystals

    Science.gov (United States)

    Bonin, C. J.; González, C. E.; Segnorile, H. H.; Zamar, R. C.

    2013-10-01

    The quasi-equilibrium states of an observed quantum system involve as many constants of motion as the dimension of the operator basis which spans the blocks of all the degenerate eigenvalues of the Hamiltonian that drives the system dynamics, however, the possibility of observing such quasi-invariants in solid-like spin systems in Nuclear Magnetic Resonance (NMR) is not a strictly exact prediction. The aim of this work is to provide experimental evidence of several quasi-invariants, in the proton NMR of small spin clusters, like nematic liquid crystal molecules, in which the use of thermodynamic arguments is not justified. We explore the spin states prepared with the Jeener-Broekaert pulse sequence by analyzing the time-domain signals yielded by this sequence as a function of the preparation times, in a variety of dipolar networks, solids, and liquid crystals. We observe that the signals can be explained with two dipolar quasi-invariants only within a range of short preparation times, however at longer times liquid crystal signals show an echo-like behaviour whose description requires assuming more quasi-invariants. We study the multiple quantum coherence content of such signals on a basis orthogonal to the z-basis and see that such states involve a significant number of correlated spins. Therefore, we show that the NMR signals within the whole preparation time-scale can only be reconstructed by assuming the occurrence of multiple quasi-invariants which we experimentally isolate.

  15. Stationary centrifugal mass energy storage at the Hamburg subway; Stationaerer Schwungmassen-Energiespeicher bei der Hamburger U-Bahn

    Energy Technology Data Exchange (ETDEWEB)

    Steinhorst, F. [Hamburger Hochbahn AG, Hamburg (Germany). Abt. Energieanlagen; Jonassen, I.; Peters, A. [Hamburger Hochbahn AG, Hamburg (Germany). Fachbereich Energieversorgung

    2008-07-01

    A stationary energy storage is to be used as a model in a substation of the Hamburg subway network with a view to the environmentally compatible and technically proper use of the brake energy available in electrified local public transport systems. A further question to be reviewed is whether the use of other energy storages in the subway network is a reasonable solution. (orig.)

  16. Stationary average consensus protocol for a class of heterogeneous high-order multi-agent systems with application for aircraft

    Science.gov (United States)

    Rezaei, Mohammad Hadi; Menhaj, Mohammad Bagher

    2018-01-01

    This paper investigates the stationary average consensus problem for a class of heterogeneous-order multi-agent systems. The goal is to bring the positions of agents to the average of their initial positions while letting the other states converge to zero. To this end, three different consensus protocols are proposed. First, based on the auxiliary variables information among the agents under switching directed networks and state-feedback control, a protocol is proposed whereby all the agents achieve stationary average consensus. In the second and third protocols, by resorting to only measurements of relative positions of neighbouring agents under fixed balanced directed networks, two control frameworks are presented with two strategies based on state-feedback and output-feedback control. Finally, simulation results are given to illustrate the effectiveness of the proposed protocols.

  17. Galvanically Isolated Quasi-Z-Source DC–DC Converter With a Novel ZVS and ZCS Technique

    DEFF Research Database (Denmark)

    Husev, Oleksandr; Liivik, Liisa; Blaabjerg, Frede

    2015-01-01

    This paper focuses on the galvanically isolated quasi-Z-source dc-dc converter with a novel zero voltage and zero current switching technique. The unique feature of the impedance network lies in combining the buck-boost operation capability with the short- and open-circuit immunity of transistors......; at the same time, it can perform zero voltage and zero current switching on the primary side. The boundary conduction mode of the current in the second inductor of the quasi-Z-source network was used along with snubber capacitors in the two out of four transistors and a special control algorithm to achieve...

  18. Stationary and Transient Response Statistics

    DEFF Research Database (Denmark)

    Madsen, Peter Hauge; Krenk, Steen

    1982-01-01

    The covariance functions for the transient response of a linear MDOF-system due to stationary time limited excitation with an arbitrary frequency content are related directly to the covariance functions of the stationary response. For rational spectral density functions closed form expressions fo...

  19. Stationary nonlinear Airy beams

    International Nuclear Information System (INIS)

    Lotti, A.; Faccio, D.; Couairon, A.; Papazoglou, D. G.; Panagiotopoulos, P.; Tzortzakis, S.; Abdollahpour, D.

    2011-01-01

    We demonstrate the existence of an additional class of stationary accelerating Airy wave forms that exist in the presence of third-order (Kerr) nonlinearity and nonlinear losses. Numerical simulations and experiments, in agreement with the analytical model, highlight how these stationary solutions sustain the nonlinear evolution of Airy beams. The generic nature of the Airy solution allows extension of these results to other settings, and a variety of applications are suggested.

  20. Ultra-sensitive quasi-distributed temperature sensor based on an apodized fiber Bragg grating.

    Science.gov (United States)

    Mohammed, Nazmi A; El Serafy, Hatem O

    2018-01-10

    This work targets a remarkable quasi-distributed temperature sensor based on an apodized fiber Bragg grating. To achieve this, the mathematical formula for a proposed apodization function is carried out and tested. Then, an optimization parametric process required to achieve the remarkable accuracy that is based on coupled mode theory (CMT) is done. A detailed investigation for the side lobe analysis, which is a primary judgment factor, especially in quasi-distributed configuration, is investigated. A comparison between elite selection of apodization profiles (extracted from related literatures) and the proposed modified-Nuttal profile is carried out covering reflectivity peak, full width half maximum (FWHM), and side lobe analysis. The optimization process concludes that the proposed modified-Nuttal profile with a length (L) of 15 mm and refractive index modulation amplitude (Δn) of 1.4×10 -4 is the optimum choice for single-stage and quasi-distributed temperature sensor networks. At previous values, the proposed profile achieves an acceptable reflectivity peak of 10 -0.426   dB, acceptable FWHM of 0.0808 nm, lowest side lobe maximum (SL max) of 7.037×10 -12   dB, lowest side lobe average (SL avg) of 3.883×10 -12   dB, and lowest side lobe suppression ratio (SLSR) of 1.875×10 -11   dB. These optimized characteristics lead to an accurate single-stage sensor with a temperature sensitivity of 0.0136 nm/°C. For the quasi-distributed scenario, a noteworthy total isolation of 91 dB is achieved without temperature, and an isolation of 4.83 dB is achieved while applying temperature of 110°C for a five-stage temperature-sensing network. Further investigation is made proving that consistency in choosing the apodization profile in the quasi-distributed network is mandatory. If the consistency condition is violated, the proposed profile still survives with a casualty of side lobe level rise of -73.2070  dB when adding uniform apodization and

  1. 30 CFR 57.14115 - Stationary grinding machines.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Stationary grinding machines. 57.14115 Section... and Equipment Safety Devices and Maintenance Requirements § 57.14115 Stationary grinding machines. Stationary grinding machines, other than special bit grinders, shall be equipped with— (a) Peripheral hoods...

  2. Quasi-atoms

    International Nuclear Information System (INIS)

    Armbruster, P.

    1976-01-01

    The concept of a quasi-atom is discussed, and several experiments are described in which molecular or quasi-atomic transitions have been observed. X-ray spectra are shown for these experiments in which heavy ion projectiles were incident on various targets and the resultant combined system behaved as a quasi-atom. This rapidly developing field has already given new insight into atomic collision phenomena. (P.J.S.)

  3. Asymptotic Theory for the QMLE in GARCH-X Models with Stationary and Non-Stationary Covariates

    DEFF Research Database (Denmark)

    Han, Heejoon; Kristensen, Dennis

    as captured by its long-memory parameter dx; in particular, we allow for both stationary and non-stationary covariates. We show that the QMLE'’s of the regression coefficients entering the volatility equation are consistent and normally distributed in large samples independently of the degree of persistence....... This implies that standard inferential tools, such as t-statistics, do not have to be adjusted to the level of persistence. On the other hand, the intercept in the volatility equation is not identifi…ed when the covariate is non-stationary which is akin to the results of Jensen and Rahbek (2004, Econometric...

  4. 30 CFR 56.14115 - Stationary grinding machines.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Stationary grinding machines. 56.14115 Section... Equipment Safety Devices and Maintenance Requirements § 56.14115 Stationary grinding machines. Stationary grinding machines, other than special bit grinders, shall be equipped with— (a) Peripheral hoods capable of...

  5. Optical chaos and hybrid WDM/TDM based large capacity quasi-distributed sensing network with real-time fiber fault monitoring.

    Science.gov (United States)

    Luo, Yiyang; Xia, Li; Xu, Zhilin; Yu, Can; Sun, Qizhen; Li, Wei; Huang, Di; Liu, Deming

    2015-02-09

    An optical chaos and hybrid wavelength division multiplexing/time division multiplexing (WDM/TDM) based large capacity quasi-distributed sensing network with real-time fiber fault monitoring is proposed. Chirped fiber Bragg grating (CFBG) intensity demodulation is adopted to improve the dynamic range of the measurements. Compared with the traditional sensing interrogation methods in time, radio frequency and optical wavelength domains, the measurand sensing and the precise locating of the proposed sensing network can be simultaneously interrogated by the relative amplitude change (RAC) and the time delay of the correlation peak in the cross-correlation spectrum. Assisted with the WDM/TDM technology, hundreds of sensing units could be potentially multiplexed in the multiple sensing fiber lines. Based on the proof-of-concept experiment for axial strain measurement with three sensing fiber lines, the strain sensitivity up to 0.14% RAC/με and the precise locating of the sensors are achieved. Significantly, real-time fiber fault monitoring in the three sensing fiber lines is also implemented with a spatial resolution of 2.8 cm.

  6. Simulation studies in biochemical signaling and enzyme reactions

    Science.gov (United States)

    Nelatury, Sudarshan R.; Vagula, Mary C.

    2014-06-01

    Biochemical pathways characterize various biochemical reaction schemes that involve a set of species and the manner in which they are connected. Determination of schematics that represent these pathways is an important task in understanding metabolism and signal transduction. Examples of these Pathways are: DNA and protein synthesis, and production of several macro-molecules essential for cell survival. A sustained feedback mechanism arises in gene expression and production of mRNA that lead to protein synthesis if the protein so synthesized serves as a transcription factor and becomes a repressor of the gene expression. The cellular regulations are carried out through biochemical networks consisting of reactions and regulatory proteins. Systems biology is a relatively new area that attempts to describe the biochemical pathways analytically and develop reliable mathematical models for the pathways. A complete understanding of chemical reaction kinetics is prohibitively hard thanks to the nonlinear and highly complex mechanisms that regulate protein formation, but attempting to numerically solve some of the governing differential equations seems to offer significant insight about their biochemical picture. To validate these models, one can perform simple experiments in the lab. This paper introduces fundamental ideas in biochemical signaling and attempts to take first steps into the understanding of biochemical oscillations. Initially, the two-pool model of calcium is used to describe the dynamics behind the oscillations. Later we present some elementary results showing biochemical oscillations arising from solving differential equations of Elowitz and Leibler using MATLAB software.

  7. Strong Stationary Duality for Diffusion Processes

    OpenAIRE

    Fill, James Allen; Lyzinski, Vince

    2014-01-01

    We develop the theory of strong stationary duality for diffusion processes on compact intervals. We analytically derive the generator and boundary behavior of the dual process and recover a central tenet of the classical Markov chain theory in the diffusion setting by linking the separation distance in the primal diffusion to the absorption time in the dual diffusion. We also exhibit our strong stationary dual as the natural limiting process of the strong stationary dual sequence of a well ch...

  8. Statistical modeling of the Internet traffic dynamics: To which extent do we need long-term correlations?

    Science.gov (United States)

    Markelov, Oleg; Nguyen Duc, Viet; Bogachev, Mikhail

    2017-11-01

    Recently we have suggested a universal superstatistical model of user access patterns and aggregated network traffic. The model takes into account the irregular character of end user access patterns on the web via the non-exponential distributions of the local access rates, but neglects the long-term correlations between these rates. While the model is accurate for quasi-stationary traffic records, its performance under highly variable and especially non-stationary access dynamics remains questionable. In this paper, using an example of the traffic patterns from a highly loaded network cluster hosting the website of the 1998 FIFA World Cup, we suggest a generalization of the previously suggested superstatistical model by introducing long-term correlations between access rates. Using queueing system simulations, we show explicitly that this generalization is essential for modeling network nodes with highly non-stationary access patterns, where neglecting long-term correlations leads to the underestimation of the empirical average sojourn time by several decades under high throughput utilization.

  9. Sampling design optimisation for rainfall prediction using a non-stationary geostatistical model

    Science.gov (United States)

    Wadoux, Alexandre M. J.-C.; Brus, Dick J.; Rico-Ramirez, Miguel A.; Heuvelink, Gerard B. M.

    2017-09-01

    The accuracy of spatial predictions of rainfall by merging rain-gauge and radar data is partly determined by the sampling design of the rain-gauge network. Optimising the locations of the rain-gauges may increase the accuracy of the predictions. Existing spatial sampling design optimisation methods are based on minimisation of the spatially averaged prediction error variance under the assumption of intrinsic stationarity. Over the past years, substantial progress has been made to deal with non-stationary spatial processes in kriging. Various well-documented geostatistical models relax the assumption of stationarity in the mean, while recent studies show the importance of considering non-stationarity in the variance for environmental processes occurring in complex landscapes. We optimised the sampling locations of rain-gauges using an extension of the Kriging with External Drift (KED) model for prediction of rainfall fields. The model incorporates both non-stationarity in the mean and in the variance, which are modelled as functions of external covariates such as radar imagery, distance to radar station and radar beam blockage. Spatial predictions are made repeatedly over time, each time recalibrating the model. The space-time averaged KED variance was minimised by Spatial Simulated Annealing (SSA). The methodology was tested using a case study predicting daily rainfall in the north of England for a one-year period. Results show that (i) the proposed non-stationary variance model outperforms the stationary variance model, and (ii) a small but significant decrease of the rainfall prediction error variance is obtained with the optimised rain-gauge network. In particular, it pays off to place rain-gauges at locations where the radar imagery is inaccurate, while keeping the distribution over the study area sufficiently uniform.

  10. Bistable responses in bacterial genetic networks: Designs and dynamical consequences

    Science.gov (United States)

    Tiwari, Abhinav; Ray, J. Christian J.; Narula, Jatin; Igoshin, Oleg A.

    2011-01-01

    A key property of living cells is their ability to react to stimuli with specific biochemical responses. These responses can be understood through the dynamics of underlying biochemical and genetic networks. Evolutionary design principles have been well studied in networks that display graded responses, with a continuous relationship between input signal and system output. Alternatively, biochemical networks can exhibit bistable responses so that over a range of signals the network possesses two stable steady states. In this review, we discuss several conceptual examples illustrating network designs that can result in a bistable response of the biochemical network. Next, we examine manifestations of these designs in bacterial master-regulatory genetic circuits. In particular, we discuss mechanisms and dynamic consequences of bistability in three circuits: two-component systems, sigma-factor networks, and a multistep phosphorelay. Analyzing these examples allows us to expand our knowledge of evolutionary design principles for networks with bistable responses. PMID:21385588

  11. Stationary scattering theory

    International Nuclear Information System (INIS)

    Combes, J.M.

    1980-10-01

    A complementary approach to the time dependent scattering theory for one-body Schroedinger operators is presented. The stationary theory is concerned with objects of quantum theory like scattering waves and amplitudes. In the more recent abstract stationary theory some generalized form of the Lippman-Schwinger equation plays the basic role. Solving this equation leads to a linear map between generalized eigenfunctions of the perturbed and unperturbed operators. This map is the section at fixed energy of the wave-operator from the time dependent theory. Although the radiation condition does not appears explicitely in this formulation it can be shown to hold a posteriori in a variety of situations thus restoring the link with physical theories

  12. Hybrid stochastic simplifications for multiscale gene networks

    Directory of Open Access Journals (Sweden)

    Debussche Arnaud

    2009-09-01

    Full Text Available Abstract Background Stochastic simulation of gene networks by Markov processes has important applications in molecular biology. The complexity of exact simulation algorithms scales with the number of discrete jumps to be performed. Approximate schemes reduce the computational time by reducing the number of simulated discrete events. Also, answering important questions about the relation between network topology and intrinsic noise generation and propagation should be based on general mathematical results. These general results are difficult to obtain for exact models. Results We propose a unified framework for hybrid simplifications of Markov models of multiscale stochastic gene networks dynamics. We discuss several possible hybrid simplifications, and provide algorithms to obtain them from pure jump processes. In hybrid simplifications, some components are discrete and evolve by jumps, while other components are continuous. Hybrid simplifications are obtained by partial Kramers-Moyal expansion 123 which is equivalent to the application of the central limit theorem to a sub-model. By averaging and variable aggregation we drastically reduce simulation time and eliminate non-critical reactions. Hybrid and averaged simplifications can be used for more effective simulation algorithms and for obtaining general design principles relating noise to topology and time scales. The simplified models reproduce with good accuracy the stochastic properties of the gene networks, including waiting times in intermittence phenomena, fluctuation amplitudes and stationary distributions. The methods are illustrated on several gene network examples. Conclusion Hybrid simplifications can be used for onion-like (multi-layered approaches to multi-scale biochemical systems, in which various descriptions are used at various scales. Sets of discrete and continuous variables are treated with different methods and are coupled together in a physically justified approach.

  13. The stationary flow in a heterogeneous compliant vessel network

    International Nuclear Information System (INIS)

    Filoche, Marcel; Florens, Magali

    2011-01-01

    We introduce a mathematical model of the hydrodynamic transport into systems consisting in a network of connected flexible pipes. In each pipe of the network, the flow is assumed to be steady and one-dimensional. The fluid-structure interaction is described through tube laws which relate the pipe diameter to the pressure difference across the pipe wall. We show that the resulting one-dimensional differential equation describing the flow in the pipe can be exactly integrated if one is able to estimate averages of the Reynolds number along the pipe. The differential equation is then transformed into a non linear scalar equation relating pressures at both ends of the pipe and the flow rate in the pipe. These equations are coupled throughout the network with mass conservation equations for the flow and zero pressure losses at the branching points of the network. This allows us to derive a general model for the computation of the flow into very large inhomogeneous networks consisting of several thousands of flexible pipes. This model is then applied to perform numerical simulations of the human lung airway system at exhalation. The topology of the system and the tube laws are taken from morphometric and physiological data in the literature. We find good qualitative and quantitative agreement between the simulation results and flow-volume loops measured in real patients. In particular, expiratory flow limitation which is an essential characteristic of forced expiration is found to be well reproduced by our simulations. Finally, a mathematical model of a pathology (Chronic Obstructive Pulmonary Disease) is introduced which allows us to quantitatively assess the influence of a moderate or severe alteration of the airway compliances.

  14. Towards a versatile active wavelength converter for all-optical networks based on quasi-phase matched intra-cavity difference-frequency generation.

    Science.gov (United States)

    Torregrosa, Adrián J; Maestre, Haroldo; Capmany, Juan

    2013-11-18

    The availability of reconfigurable all-optical wavelength converters for an efficient and flexible use of optical resources in WDM (wavelength division multiplexing) networks is still lacking at present. We propose and report preliminary results on a versatile active technique for multiple and tunable wavelength conversions in the 1500-1700 nm spectral region. The technique is based on combining broadband quasi-phase matched intra-cavity parametric single-pass difference-frequency generation close to degeneracy in a diode-pumped tunable laser. A periodically poled stoichiometric lithium tantalate crystal is used as the nonlinear medium, with a parametric pump wave generated in a continuous-wave self-injection locked Cr3+:LiCAF tunable laser operating at around 800 nm.

  15. Modelling Mobility in Mobile AD-HOC Network Environments ...

    African Journals Online (AJOL)

    In the simulation of mobile ad-hoc networks (MANETs), the probability distribution governing the movement of nodes typically varies over time and converges to a steady state distribution, known as the stationary distribution. This paper presents and evaluates the stationary distribution for location, speed and pause time of a ...

  16. Stationary infinitely divisible processes

    DEFF Research Database (Denmark)

    Barndorff-Nielsen, Ole E.

    Several recent strands of work has led to the consideration of various types of continuous time stationary and infinitely divisible processes. A review of these types, with some new results, is presented.......Several recent strands of work has led to the consideration of various types of continuous time stationary and infinitely divisible processes. A review of these types, with some new results, is presented....

  17. Flood frequency analysis of historical flood data under stationary and non-stationary modelling

    Science.gov (United States)

    Machado, M. J.; Botero, B. A.; López, J.; Francés, F.; Díez-Herrero, A.; Benito, G.

    2015-06-01

    Historical records are an important source of information on extreme and rare floods and fundamental to establish a reliable flood return frequency. The use of long historical records for flood frequency analysis brings in the question of flood stationarity, since climatic and land-use conditions can affect the relevance of past flooding as a predictor of future flooding. In this paper, a detailed 400 yr flood record from the Tagus River in Aranjuez (central Spain) was analysed under stationary and non-stationary flood frequency approaches, to assess their contribution within hazard studies. Historical flood records in Aranjuez were obtained from documents (Proceedings of the City Council, diaries, chronicles, memoirs, etc.), epigraphic marks, and indirect historical sources and reports. The water levels associated with different floods (derived from descriptions or epigraphic marks) were computed into discharge values using a one-dimensional hydraulic model. Secular variations in flood magnitude and frequency, found to respond to climate and environmental drivers, showed a good correlation between high values of historical flood discharges and a negative mode of the North Atlantic Oscillation (NAO) index. Over the systematic gauge record (1913-2008), an abrupt change on flood magnitude was produced in 1957 due to constructions of three major reservoirs in the Tagus headwaters (Bolarque, Entrepeñas and Buendia) controlling 80% of the watershed surface draining to Aranjuez. Two different models were used for the flood frequency analysis: (a) a stationary model estimating statistical distributions incorporating imprecise and categorical data based on maximum likelihood estimators, and (b) a time-varying model based on "generalized additive models for location, scale and shape" (GAMLSS) modelling, which incorporates external covariates related to climate variability (NAO index) and catchment hydrology factors (in this paper a reservoir index; RI). Flood frequency

  18. A Simple Approach to Study Designs in Complex Biochemical ...

    Indian Academy of Sciences (India)

    Somdatta Sinha

    Protein sequences. • Biochemical & Genetic information. REVERSE ENGINEERING. LARGE NETWORKS. FORWARD ENGINEERING. All designs that are not physically forbidden are realizable, but not all realizable designs are functionally effective. (in relation to context and constraints of the system and environment).

  19. Loss surface of XOR artificial neural networks

    Science.gov (United States)

    Mehta, Dhagash; Zhao, Xiaojun; Bernal, Edgar A.; Wales, David J.

    2018-05-01

    Training an artificial neural network involves an optimization process over the landscape defined by the cost (loss) as a function of the network parameters. We explore these landscapes using optimization tools developed for potential energy landscapes in molecular science. The number of local minima and transition states (saddle points of index one), as well as the ratio of transition states to minima, grow rapidly with the number of nodes in the network. There is also a strong dependence on the regularization parameter, with the landscape becoming more convex (fewer minima) as the regularization term increases. We demonstrate that in our formulation, stationary points for networks with Nh hidden nodes, including the minimal network required to fit the XOR data, are also stationary points for networks with Nh+1 hidden nodes when all the weights involving the additional node are zero. Hence, smaller networks trained on XOR data are embedded in the landscapes of larger networks. Our results clarify certain aspects of the classification and sensitivity (to perturbations in the input data) of minima and saddle points for this system, and may provide insight into dropout and network compression.

  20. Stationary solutions and asymptotic flatness I

    International Nuclear Information System (INIS)

    Reiris, Martin

    2014-01-01

    In general relativity, a stationary isolated system is defined as an asymptotically flat (AF) stationary spacetime with compact material sources. Other definitions that are less restrictive on the type of asymptotic could in principle be possible. Between this article and its sequel, we show that under basic assumptions, asymptotic flatness indeed follows as a consequence of Einstein's theory. In particular, it is proved that any vacuum stationary spacetime-end whose (quotient) manifold is diffeomorphic to R 3 minus a ball and whose Killing field has its norm bounded away from zero, is necessarily AF with Schwarzschildian fall off. The ‘excised’ ball would contain (if any) the actual material body, but this information is unnecessary to reach the conclusion. In this first article, we work with weakly asymptotically flat (WAF) stationary ends, a notion that generalizes as much as possible that of the AF end, and prove that WAF ends are AF with Schwarzschildian fall off. Physical and mathematical implications are also discussed. (paper)

  1. Analyzing Non Stationary Processes in Radiometers

    Science.gov (United States)

    Racette, Paul

    2010-01-01

    The lack of well-developed techniques for modeling changing statistical moments in our observations has stymied the application of stochastic process theory for many scientific and engineering applications. Non linear effects of the observation methodology is one of the most perplexing aspects to modeling non stationary processes. This perplexing problem was encountered when modeling the effect of non stationary receiver fluctuations on the performance of radiometer calibration architectures. Existing modeling approaches were found not applicable; particularly problematic is modeling processes across scales over which they begin to exhibit non stationary behavior within the time interval of the calibration algorithm. Alternatively, the radiometer output is modeled as samples from a sequence random variables; the random variables are treated using a conditional probability distribution function conditioned on the use of the variable in the calibration algorithm. This approach of treating a process as a sequence of random variables with non stationary stochastic moments produce sensible predictions of temporal effects of calibration algorithms. To test these model predictions, an experiment using the Millimeter wave Imaging Radiometer (MIR) was conducted. The MIR with its two black body calibration references was configured in a laboratory setting to observe a third ultra-stable reference (CryoTarget). The MIR was programmed to sequentially sample each of the three references in approximately a 1 second cycle. Data were collected over a six-hour interval. The sequence of reference measurements form an ensemble sample set comprised of a series of three reference measurements. Two references are required to estimate the receiver response. A third reference is used to estimate the uncertainty in the estimate. Typically, calibration algorithms are designed to suppress the non stationary effects of receiver fluctuations. By treating the data sequence as an ensemble

  2. Generalized bi-quasi-variational inequalities for quasi-semi-monotone and bi-quasi-semi-monotone operators with applications in non-compact settings and minimization problems

    Directory of Open Access Journals (Sweden)

    Chowdhury Molhammad SR

    2000-01-01

    Full Text Available Results are obtained on existence theorems of generalized bi-quasi-variational inequalities for quasi-semi-monotone and bi-quasi-semi-monotone operators in both compact and non-compact settings. We shall use the concept of escaping sequences introduced by Border (Fixed Point Theorem with Applications to Economics and Game Theory, Cambridge University Press, Cambridge, 1985 to obtain results in non-compact settings. Existence theorems on non-compact generalized bi-complementarity problems for quasi-semi-monotone and bi-quasi-semi-monotone operators are also obtained. Moreover, as applications of some results of this paper on generalized bi-quasi-variational inequalities, we shall obtain existence of solutions for some kind of minimization problems with quasi- semi-monotone and bi-quasi-semi-monotone operators.

  3. Energy Efficient Routing in Nomadic Networks

    DEFF Research Database (Denmark)

    Kristensen, Mads Darø; Bouvin, Niels Olof

    2007-01-01

    We present an evaluation of a novel energy-efficient routing protocol for mobile ad-hoc networks. We combine two techniques for optimizing energy levels with a well-known routing protocol. We examine the behavior of this combination in a nomadic network setting, where some nodes are stationary...

  4. On A Quasi-local Mass

    OpenAIRE

    Zhang, Xiao

    2009-01-01

    We modify previous quasi-local mass definition. The new definition provides expressions of the quasi-local energy, the quasi-local linear momentum and the quasi-local mass. And they are equal to the ADM expressions at spatial infinity. Moreover, the new quasi-local energy has the positivity property.

  5. Mathematical treatment of isotopologue and isotopomer speciation and fractionation in biochemical kinetics

    Science.gov (United States)

    Maggi, Federico; Riley, William J.

    2010-03-01

    We present a mathematical treatment of the kinetic equations that describe isotopologue and isotopomer speciation and fractionation during enzyme-catalyzed biochemical reactions. These equations, presented here with the name GEBIK (general equations for biochemical isotope kinetics) and GEBIF (general equations for biochemical isotope fractionation), take into account microbial biomass and enzyme dynamics, reaction stoichiometry, isotope substitution number, and isotope location within each isotopologue and isotopomer. In addition to solving the complete GEBIK and GEBIF, we also present and discuss two approximations to the full solutions under the assumption of biomass-free and enzyme steady-state, and under the quasi-steady-state assumption as applied to the complexation rate. The complete and approximate approaches are applied to observations of biological denitrification in soils. Our analysis highlights that the full GEBIK and GEBIF provide a more accurate description of concentrations and isotopic compositions of substrates and products throughout the reaction than do the approximate forms. We demonstrate that the isotopic effects of a biochemical reaction depend, in the most general case, on substrate and complex concentrations and, therefore, the fractionation factor is a function of time. We also demonstrate that inverse isotopic effects can occur for values of the fractionation factor smaller than 1, and that reactions that do not discriminate isotopes do not necessarily imply a fractionation factor equal to 1.

  6. Non-Stationary Modelling and Simulation of Near-Source Earthquake Ground Motion

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Kirkegaard, Poul Henning; Fouskitakis, G. N.

    1997-01-01

    This paper is concerned with modelling and simulation of near-source earthquake ground motion. Recent studies have revealed that these motions show heavy non-stationary behaviour with very low frequencies dominating parts of the earthquake sequence. Modeling and simulation of this behaviour...... by an epicentral distance of 16 km and measured during the 1979 Imperial Valley earthquake in California (U .S .A.). The results of the study indicate that while all three approaches can successfully predict near-source ground motions, the Neural Network based one gives somewhat poorer simulation results....

  7. Non-Stationary Modelling and Simulation of Near-Source Earthquake Ground Motion

    DEFF Research Database (Denmark)

    Skjærbæk, P. S.; Kirkegaard, Poul Henning; Fouskitakis, G. N.

    This paper is concerned with modelling and simulation of near-source earthquake ground motion. Recent studies have revealed that these motions show heavy non-stationary behaviour with very low frequencies dominating parts of the earthquake sequence. Modelling and simulation of this behaviour...... by an epicentral distance of 16 km and measured during the 1979 Imperial valley earthquake in California (USA). The results of the study indicate that while all three approaches can succesfully predict near-source ground motions, the Neural Network based one gives somewhat poorer simulation results....

  8. Frequency Analysis of Extreme Sub-Daily Precipitation under Stationary and Non-Stationary Conditions across Two Contrasting Hydroclimatic Environments

    Science.gov (United States)

    Demaria, E. M.; Goodrich, D. C.; Keefer, T.

    2017-12-01

    Observed sub-daily precipitation intensities from contrasting hydroclimatic environments in the USA are used to evaluate temporal trends and to develop Intensity-Duration Frequency (IDF) curves under stationary and nonstationary climatic conditions. Analyses are based on observations from two United States Department of Agriculture (USDA)-Agricultural Research Service (ARS) experimental watersheds located in a semi-arid and a temperate environment. We use an Annual Maximum Series (AMS) and a Partial Duration Series (PDS) approach to identify temporal trends in maximum intensities for durations ranging from 5- to 1440-minutes. A Bayesian approach with Monte Carlo techniques is used to incorporate the effect of non-stationary climatic assumptions in the IDF curves. The results show increasing trends in observed AMS sub-daily intensities in both watersheds whereas trends in the PDS observations are mostly positive in the semi-arid site and a mix of positive and negative in the temperate site. Stationary climate assumptions lead to much lower estimated sub-daily intensities than those under non-stationary assumptions with larger absolute differences found for shorter durations and smaller return periods. The risk of failure (R) of a hydraulic structure is increased for non-stationary effects over those of stationary effects, with absolute differences of 25% for a 100-year return period (T) and a project life (n) of 100 years. The study highlights the importance of considering non-stationarity, due to natural variability or to climate change, in storm design.

  9. Asymptotics of relativistic spin networks

    International Nuclear Information System (INIS)

    Barrett, John W; Steele, Christopher M

    2003-01-01

    The stationary phase technique is used to calculate asymptotic formulae for SO(4) relativistic spin networks. For the tetrahedral spin network this gives the square of the Ponzano-Regge asymptotic formula for the SU(2) 6j-symbol. For the 4-simplex (10j-symbol) the asymptotic formula is compared with numerical calculations of the spin network evaluation. Finally, we discuss the asymptotics of the SO(3, 1) 10j-symbol

  10. Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps.

    Science.gov (United States)

    Inoue, Kentaro; Shimozono, Shinichi; Yoshida, Hideaki; Kurata, Hiroyuki

    2012-01-01

    For visualizing large-scale biochemical network maps, it is important to calculate the coordinates of molecular nodes quickly and to enhance the understanding or traceability of them. The grid layout is effective in drawing compact, orderly, balanced network maps with node label spaces, but existing grid layout algorithms often require a high computational cost because they have to consider complicated positional constraints through the entire optimization process. We propose a hybrid grid layout algorithm that consists of a non-grid, fast layout (preprocessor) algorithm and an approximate pattern matching algorithm that distributes the resultant preprocessed nodes on square grid points. To demonstrate the feasibility of the hybrid layout algorithm, it is characterized in terms of the calculation time, numbers of edge-edge and node-edge crossings, relative edge lengths, and F-measures. The proposed algorithm achieves outstanding performances compared with other existing grid layouts. Use of an approximate pattern matching algorithm quickly redistributes the laid-out nodes by fast, non-grid algorithms on the square grid points, while preserving the topological relationships among the nodes. The proposed algorithm is a novel use of the pattern matching, thereby providing a breakthrough for grid layout. This application program can be freely downloaded from http://www.cadlive.jp/hybridlayout/hybridlayout.html.

  11. Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps.

    Directory of Open Access Journals (Sweden)

    Kentaro Inoue

    Full Text Available BACKGROUND: For visualizing large-scale biochemical network maps, it is important to calculate the coordinates of molecular nodes quickly and to enhance the understanding or traceability of them. The grid layout is effective in drawing compact, orderly, balanced network maps with node label spaces, but existing grid layout algorithms often require a high computational cost because they have to consider complicated positional constraints through the entire optimization process. RESULTS: We propose a hybrid grid layout algorithm that consists of a non-grid, fast layout (preprocessor algorithm and an approximate pattern matching algorithm that distributes the resultant preprocessed nodes on square grid points. To demonstrate the feasibility of the hybrid layout algorithm, it is characterized in terms of the calculation time, numbers of edge-edge and node-edge crossings, relative edge lengths, and F-measures. The proposed algorithm achieves outstanding performances compared with other existing grid layouts. CONCLUSIONS: Use of an approximate pattern matching algorithm quickly redistributes the laid-out nodes by fast, non-grid algorithms on the square grid points, while preserving the topological relationships among the nodes. The proposed algorithm is a novel use of the pattern matching, thereby providing a breakthrough for grid layout. This application program can be freely downloaded from http://www.cadlive.jp/hybridlayout/hybridlayout.html.

  12. Adapting Bayes Network Structures to Non-stationary Domains

    DEFF Research Database (Denmark)

    Nielsen, Søren Holbech; Nielsen, Thomas Dyhre

    2008-01-01

    When an incremental structural learning method gradually modifies a Bayesian network (BN) structure to fit a sequential stream of observations, we call the process structural adaptation. Structural adaptation is useful when the learner is set to work in an unknown environment, where a BN is gradu...

  13. Stationary closed strings in five-dimensional flat spacetime

    Science.gov (United States)

    Igata, Takahisa; Ishihara, Hideki; Nishiwaki, Keisuke

    2012-11-01

    We investigate stationary rotating closed Nambu-Goto strings in five-dimensional flat spacetime. The stationary string is defined as a world sheet that is tangent to a timelike Killing vector. The Nambu-Goto equation of motion for the stationary string is reduced to the geodesic equation on the orbit space of the isometry group action generated by the Killing vector. We take a linear combination of a time-translation vector and space-rotation vectors as the Killing vector, and explicitly construct general solutions of stationary rotating closed strings in five-dimensional flat spacetime. We show a variety of their configurations and properties.

  14. Interacting neural networks

    Science.gov (United States)

    Metzler, R.; Kinzel, W.; Kanter, I.

    2000-08-01

    Several scenarios of interacting neural networks which are trained either in an identical or in a competitive way are solved analytically. In the case of identical training each perceptron receives the output of its neighbor. The symmetry of the stationary state as well as the sensitivity to the used training algorithm are investigated. Two competitive perceptrons trained on mutually exclusive learning aims and a perceptron which is trained on the opposite of its own output are examined analytically. An ensemble of competitive perceptrons is used as decision-making algorithms in a model of a closed market (El Farol Bar problem or the Minority Game. In this game, a set of agents who have to make a binary decision is considered.); each network is trained on the history of minority decisions. This ensemble of perceptrons relaxes to a stationary state whose performance can be better than random.

  15. Stochastic variational learning in recurrent spiking networks.

    Science.gov (United States)

    Jimenez Rezende, Danilo; Gerstner, Wulfram

    2014-01-01

    The ability to learn and perform statistical inference with biologically plausible recurrent networks of spiking neurons is an important step toward understanding perception and reasoning. Here we derive and investigate a new learning rule for recurrent spiking networks with hidden neurons, combining principles from variational learning and reinforcement learning. Our network defines a generative model over spike train histories and the derived learning rule has the form of a local Spike Timing Dependent Plasticity rule modulated by global factors (neuromodulators) conveying information about "novelty" on a statistically rigorous ground. Simulations show that our model is able to learn both stationary and non-stationary patterns of spike trains. We also propose one experiment that could potentially be performed with animals in order to test the dynamics of the predicted novelty signal.

  16. Convergence acceleration of quasi-periodic and quasi-periodic-rational interpolations by polynomial corrections

    OpenAIRE

    Lusine Poghosyan

    2014-01-01

    The paper considers convergence acceleration of the quasi-periodic and the quasi-periodic-rational interpolations by application of polynomial corrections. We investigate convergence of the resultant quasi-periodic-polynomial and quasi-periodic-rational-polynomial interpolations and derive exact constants of the main terms of asymptotic errors in the regions away from the endpoints. Results of numerical experiments clarify behavior of the corresponding interpolations for moderate number of in...

  17. Nutrition and hydration status improve with exercise training using stationary cycling during hemodialysis (HD) in patients with end-stage renal disease (ESRD).

    Science.gov (United States)

    Załuska, Alicja; Załuska, Wojciech T; Bednarek-Skublewska, Anna; Ksiazek, Andrzej

    2002-01-01

    Patients with end-stage renal disease (ESRD) undergoing hemodialysis and peritoneal dialysis are functionally limited as a consequence of their physical, emotional, and social problems. Exercise intolerance is a major problem in chronic renal failure. Stationary cycle training during hemodialysis is recommended as safe, effective, and practical in ESRD patients treated on hemodialysis. The aim of the present study was to evaluate the effect of cycling exercises in 10 HD patients during 6-month period (including each of dialysis sessions) on nutrition, dialysis adequacy, and fluid parameters as measured by biochemical, and bioimpedance parameters. A significant increase in serum albumin concentration, Kt/V, and nPCR, and decrease in serum CRP have been observed after 6 months of regular stationary cycling during hemodialysis. Relative changes (pre-post HD) in extracellular water compartment and ECW/TBW ratio have significantly increased after 6 months of observation period.

  18. X-raying neighbour discovery in a wireless sensor network ...

    African Journals Online (AJOL)

    In most wireless sensor networks, the nodes are often assumed to be stationary. However, network connectivity is subject to changes arising from interference in wireless communication, changes in transmission power or loss of synchronization among neighbouring network nodes. Hence, even after a sensor node is aware ...

  19. Accurate reduction of a model of circadian rhythms by delayed quasi steady state assumptions

    Czech Academy of Sciences Publication Activity Database

    Vejchodský, Tomáš

    2014-01-01

    Roč. 139, č. 4 (2014), s. 577-585 ISSN 0862-7959 Grant - others:European Commission(XE) StochDetBioModel(328008) Program:FP7 Institutional support: RVO:67985840 Keywords : biochemical networks * gene regulatory networks * oscillating systems * periodic solution Subject RIV: BA - General Mathematics http://hdl.handle.net/10338.dmlcz/144135

  20. Generalized master equations for non-Poisson dynamics on networks.

    Science.gov (United States)

    Hoffmann, Till; Porter, Mason A; Lambiotte, Renaud

    2012-10-01

    The traditional way of studying temporal networks is to aggregate the dynamics of the edges to create a static weighted network. This implicitly assumes that the edges are governed by Poisson processes, which is not typically the case in empirical temporal networks. Accordingly, we examine the effects of non-Poisson inter-event statistics on the dynamics of edges, and we apply the concept of a generalized master equation to the study of continuous-time random walks on networks. We show that this equation reduces to the standard rate equations when the underlying process is Poissonian and that its stationary solution is determined by an effective transition matrix whose leading eigenvector is easy to calculate. We conduct numerical simulations and also derive analytical results for the stationary solution under the assumption that all edges have the same waiting-time distribution. We discuss the implications of our work for dynamical processes on temporal networks and for the construction of network diagnostics that take into account their nontrivial stochastic nature.

  1. Stationary shear flows in CGL anisotropic toroidal plasmas

    International Nuclear Information System (INIS)

    Pastukhov, V.P.; Ilgisonis, V.I.

    1996-01-01

    Recently a general structure of stationary shear flows in toroidal plasmas was obtained in the frame of ideal isotropic-pressure MHD model. The structure of the stationary plasma flows was shown to be determined by a hidden symmetry of MHD equations inherent in the toroidal systems with nested magnetic surfaces. However, the characteristic frequencies of the stationary plasma motion can considerably exceed the collisional frequencies in real plasma experiments. In this case the CGL collisionless MHD model seems to be more adequate than the simplified isotropic-pressure MHD model to describe the stationary plasma flows. In this paper we have generalized our approach to analyze the stationary plasma flows in the frame of the collisionless CGL model. We have found again that the hidden symmetry inherent in the toroidal topology results in two integral invariants which depend on two independent surface functions. The structure of stationary flows for CGL model is still the same as for isotropic MHD, however, the pressure tensor components satisfy a appreciably modifies the steady state force-balance equation. These results are applied to analyze the generalized equilibrium in axisymmetric (tokamak-like) magnetic confinement systems

  2. 30 CFR 75.1723 - Stationary grinding machines; protective devices.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Stationary grinding machines; protective....1723 Stationary grinding machines; protective devices. (a) Stationary grinding machines other than... the wheel. (3) Safety washers. (b) Grinding wheels shall be operated within the specifications of the...

  3. The application of unattended ground sensors to stationary targets

    International Nuclear Information System (INIS)

    Sleefe, G.E.; Peglow, S.; Hamrick, R.

    1997-01-01

    The unattended sensing of stationary (i.e. non-mobile) targets is important in applications ranging from counter-proliferation to law enforcement. With stationary targets, sources of seismic, acoustic, and electro-magnetic emissions can potentially be used to detect, identify, and locate the target. Stationary targets have considerably different sensing requirements than the traditional mobile-target unattended ground sensor applications. This paper presents the novel features and requirements of a system for sensing stationary targets. In particular, issues associated with long-listen time signal processing for signal detection, and array processing techniques for signal localization are presented. Example data and signal processing outputs from a stationary target will be used to illustrate these issues. The impact on sensor, electronic signal processing, battery subsystem, and communication requirements will also be discussed. The paper will conclude with a detailed comparison between mobile-target and stationary-target unattended ground sensor architectures

  4. Stability and instability of stationary solutions for sublinear parabolic equations

    Science.gov (United States)

    Kajikiya, Ryuji

    2018-01-01

    In the present paper, we study the initial boundary value problem of the sublinear parabolic equation. We prove the existence of solutions and investigate the stability and instability of stationary solutions. We show that a unique positive and a unique negative stationary solutions are exponentially stable and give the exact exponent. We prove that small stationary solutions are unstable. For one space dimensional autonomous equations, we elucidate the structure of stationary solutions and study the stability of all stationary solutions.

  5. Direct imaging of slow, stored and stationary EIT polaritons

    Science.gov (United States)

    Campbell, Geoff T.; Cho, Young-Wook; Su, Jian; Everett, Jesse; Robins, Nicholas; Lam, Ping Koy; Buchler, Ben

    2017-09-01

    Stationary and slow light effects are of great interest for quantum information applications. Using laser-cooled Rb87 atoms, we performed side imaging of our atomic ensemble under slow and stationary light conditions, which allows direct comparison with numerical models. The polaritons were generated using electromagnetically induced transparency (EIT), with stationary light generated using counter-propagating control fields. By controlling the power ratio of the two control fields, we show fine control of the group velocity of the stationary light. We also compare the dynamics of stationary light using monochromatic and bichromatic control fields. Our results show negligible difference between the two situations, in contrast to previous work in EIT-based systems.

  6. 30 CFR 77.401 - Stationary grinding machines; protective devices.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Stationary grinding machines; protective... OF UNDERGROUND COAL MINES Safeguards for Mechanical Equipment § 77.401 Stationary grinding machines; protective devices. (a) Stationary grinding machines other than special bit grinders shall be equipped with...

  7. BAKNET - Communication network for radiation monitoring devices

    International Nuclear Information System (INIS)

    Cohen, Y.; Wengrowicz, U.; Tirosh, D.; Barak, D.

    1997-01-01

    A system, based on a new concept of controlling and monitoring distributed radiation monitors, has been developed and approved at the NRCN. The system, named B AKNET Network , consists of a series of communication adapters connected to a main PC via an RS-485 communication network (see Fig. 1). The network's maximal length is 1200 meters and it enables connection of up to 128 adapters. The BAKNET adapters are designed to interface output signals of different types of stationary radiation monitors to a main PC. The BAKNET adapters' interface type includes: digital, analog, RS-232, and mixed output signals. This allows versatile interfacing of different stationary radiation monitors to the main computer. The connection to the main computer is via an RS-485 network, utilizing an identical communication protocol. The PC software, written in C ++ under MS-Windows, consists of two main programs. The first is the data collection program and the second is the Human Machine Interface (HMI). (authors)

  8. Polarization-multiplexed rate-adaptive non-binary-quasi-cyclic-LDPC-coded multilevel modulation with coherent detection for optical transport networks.

    Science.gov (United States)

    Arabaci, Murat; Djordjevic, Ivan B; Saunders, Ross; Marcoccia, Roberto M

    2010-02-01

    In order to achieve high-speed transmission over optical transport networks (OTNs) and maximize its throughput, we propose using a rate-adaptive polarization-multiplexed coded multilevel modulation with coherent detection based on component non-binary quasi-cyclic (QC) LDPC codes. Compared to prior-art bit-interleaved LDPC-coded modulation (BI-LDPC-CM) scheme, the proposed non-binary LDPC-coded modulation (NB-LDPC-CM) scheme not only reduces latency due to symbol- instead of bit-level processing but also provides either impressive reduction in computational complexity or striking improvements in coding gain depending on the constellation size. As the paper presents, compared to its prior-art binary counterpart, the proposed NB-LDPC-CM scheme addresses the needs of future OTNs, which are achieving the target BER performance and providing maximum possible throughput both over the entire lifetime of the OTN, better.

  9. Stationary and nonstationary properties of evolving networks with preferential linkage

    International Nuclear Information System (INIS)

    Jezewski, W.

    2002-01-01

    Networks evolving by preferential attachment of both external and internal links are investigated. The rate of adding an external link is assumed to depend linearly on the degree of a preexisting node to which a new node is connected. The process of creating an internal link, between a pair of existing vertices, is assumed to be controlled entirely by the vertex that has more links than the other vertex in the pair, and the rate of creation of such a link is assumed to be, in general, nonlinear in the degree of the more strongly connected vertex. It is shown that degree distributions of networks evolving only by creating internal links display for large degrees a nonstationary power-law decay with a time-dependent scaling exponent. Nonstationary power-law behaviors are numerically shown to persist even when the number of nodes is not fixed and both external and internal connections are introduced, provided that the rate of preferential attachment of internal connections is nonlinear. It is argued that nonstationary effects are not unlikely in real networks, although these effects may not be apparent, especially in networks with a slowly varying mean degree

  10. Nonlinear System Identification Using Quasi-ARX RBFN Models with a Parameter-Classified Scheme

    Directory of Open Access Journals (Sweden)

    Lan Wang

    2017-01-01

    Full Text Available Quasi-linear autoregressive with exogenous inputs (Quasi-ARX models have received considerable attention for their usefulness in nonlinear system identification and control. In this paper, identification methods of quasi-ARX type models are reviewed and categorized in three main groups, and a two-step learning approach is proposed as an extension of the parameter-classified methods to identify the quasi-ARX radial basis function network (RBFN model. Firstly, a clustering method is utilized to provide statistical properties of the dataset for determining the parameters nonlinear to the model, which are interpreted meaningfully in the sense of interpolation parameters of a local linear model. Secondly, support vector regression is used to estimate the parameters linear to the model; meanwhile, an explicit kernel mapping is given in terms of the nonlinear parameter identification procedure, in which the model is transformed from the nonlinear-in-nature to the linear-in-parameter. Numerical and real cases are carried out finally to demonstrate the effectiveness and generalization ability of the proposed method.

  11. Itineration of the Internet over nonequilibrium stationary states in Tsallis statistics.

    Science.gov (United States)

    Abe, Sumiyoshi; Suzuki, Norikazu

    2003-01-01

    The cumulative probability distribution of sparseness time interval in the Internet is studied by the method of data analysis. Round-trip time between a local host and a destination host through ten odd routers is measured using the ping command, i.e., doing an echo experiment. The data are found to be well described by q-exponential distributions, which maximize the Tsallis entropy indexed by q less or larger than unity, showing a scale-invariant feature of the system. The network is observed to itinerate over a series of the nonequilibrium stationary states characterized by Tsallis statistics.

  12. Design and performance investigation of a highly accurate apodized fiber Bragg grating-based strain sensor in single and quasi-distributed systems.

    Science.gov (United States)

    Ali, Taha A; Shehata, Mohamed I; Mohamed, Nazmi A

    2015-06-01

    In this work, fiber Bragg grating (FBG) strain sensors in single and quasi-distributed systems are investigated, seeking high-accuracy measurement. Since FBG-based strain sensors of small lengths are preferred in medical applications, and that causes the full width at half-maximum (FWHM) to be larger, a new apodization profile is introduced for the first time, to the best of our knowledge, with a remarkable FWHM at small sensor lengths compared to the Gaussian and Nuttall profiles, in addition to a higher mainlobe slope at these lengths. A careful selection of apodization profiles with detailed investigation is performed-using sidelobe analysis and the FWHM, which are primary judgment factors especially in a quasi-distributed configuration. A comparison between the elite selection of apodization profiles (extracted from related literature) and the proposed new profile is carried out covering the reflectivity peak, FWHM, and sidelobe analysis. The optimization process concludes that the proposed new profile with a chosen small length (L) of 10 mm and Δnac of 1.4×10-4 is the optimum choice for single stage and quasi-distributed strain-sensor networks, even better than the Gaussian profile at small sensor lengths. The proposed profile achieves the smallest FWHM of 15 GHz (suitable for UDWDM), and the highest mainlobe slope of 130 dB/nm. For the quasi-distributed scenario, a noteworthy high isolation of 6.953 dB is achieved while applying a high strain value of 1500 μstrain (με) for a five-stage strain-sensing network. Further investigation was undertaken, proving that consistency in choosing the apodization profile in the quasi-distributed network is mandatory. A test was made of the inclusion of a uniform apodized sensor among other apodized sensors with the proposed profile in an FBG strain-sensor network.

  13. Set-base dynamical parameter estimation and model invalidation for biochemical reaction networks.

    Science.gov (United States)

    Rumschinski, Philipp; Borchers, Steffen; Bosio, Sandro; Weismantel, Robert; Findeisen, Rolf

    2010-05-25

    Mathematical modeling and analysis have become, for the study of biological and cellular processes, an important complement to experimental research. However, the structural and quantitative knowledge available for such processes is frequently limited, and measurements are often subject to inherent and possibly large uncertainties. This results in competing model hypotheses, whose kinetic parameters may not be experimentally determinable. Discriminating among these alternatives and estimating their kinetic parameters is crucial to improve the understanding of the considered process, and to benefit from the analytical tools at hand. In this work we present a set-based framework that allows to discriminate between competing model hypotheses and to provide guaranteed outer estimates on the model parameters that are consistent with the (possibly sparse and uncertain) experimental measurements. This is obtained by means of exact proofs of model invalidity that exploit the polynomial/rational structure of biochemical reaction networks, and by making use of an efficient strategy to balance solution accuracy and computational effort. The practicability of our approach is illustrated with two case studies. The first study shows that our approach allows to conclusively rule out wrong model hypotheses. The second study focuses on parameter estimation, and shows that the proposed method allows to evaluate the global influence of measurement sparsity, uncertainty, and prior knowledge on the parameter estimates. This can help in designing further experiments leading to improved parameter estimates.

  14. Stationary axisymmetric Einstein--Maxwell field equations

    International Nuclear Information System (INIS)

    Catenacci, R.; Diaz Alonso, J.

    1976-01-01

    We show the existence of a formal identity between Einstein's and Ernst's stationary axisymmetric gravitational field equations and the Einstein--Maxwell and the Ernst equations for the electrostatic and magnetostatic axisymmetric cases. Our equations are invariant under very simple internal symmetry groups, and one of them appears to be new. We also obtain a method for associating two stationary axisymmetric vacuum solutions with every electrostatic known

  15. Quasi-particles at finite temperatures

    International Nuclear Information System (INIS)

    Narnhofer, H.; Thirring, W.; Requardt, M.

    1983-01-01

    We study the consequences of the KMS-condition on the properties of quasi-particles, assuming their existence. We establish: (i) If the correlation functions decay sufficiently, we can create them by quasi-free field operators. (ii) There are many age-operators T conjugate to H. For special forms of the dispersion law epsilon(k) of the quasi-particles there is a T commuting with the; (iii) There are many age-operators T conjugate to H. For special forms of the dispersion law epsilon(k) of the quasi-particles there is a T commuting with the number of quasi-particles and its time-monotonicity describes how the quasi-particles travel to infinity. (orig.)

  16. Hidden long evolutionary memory in a model biochemical network

    Science.gov (United States)

    Ali, Md. Zulfikar; Wingreen, Ned S.; Mukhopadhyay, Ranjan

    2018-04-01

    We introduce a minimal model for the evolution of functional protein-interaction networks using a sequence-based mutational algorithm, and apply the model to study neutral drift in networks that yield oscillatory dynamics. Starting with a functional core module, random evolutionary drift increases network complexity even in the absence of specific selective pressures. Surprisingly, we uncover a hidden order in sequence space that gives rise to long-term evolutionary memory, implying strong constraints on network evolution due to the topology of accessible sequence space.

  17. Stationary stochastic processes theory and applications

    CERN Document Server

    Lindgren, Georg

    2012-01-01

    Some Probability and Process BackgroundSample space, sample function, and observablesRandom variables and stochastic processesStationary processes and fieldsGaussian processesFour historical landmarksSample Function PropertiesQuadratic mean propertiesSample function continuityDerivatives, tangents, and other characteristicsStochastic integrationAn ergodic resultExercisesSpectral RepresentationsComplex-valued stochastic processesBochner's theorem and the spectral distributionSpectral representation of a stationary processGaussian processesStationary counting processesExercisesLinear Filters - General PropertiesLinear time invariant filtersLinear filters and differential equationsWhite noise in linear systemsLong range dependence, non-integrable spectra, and unstable systemsThe ARMA-familyLinear Filters - Special TopicsThe Hilbert transform and the envelopeThe sampling theoremKarhunen-Loève expansionClassical Ergodic Theory and MixingThe basic ergodic theorem in L2Stationarity and transformationsThe ergodic th...

  18. Dynamics of neural networks with continuous attractors

    Science.gov (United States)

    Fung, C. C. Alan; Wong, K. Y. Michael; Wu, Si

    2008-10-01

    We investigate the dynamics of continuous attractor neural networks (CANNs). Due to the translational invariance of their neuronal interactions, CANNs can hold a continuous family of stationary states. We systematically explore how their neutral stability facilitates the tracking performance of a CANN, which is believed to have wide applications in brain functions. We develop a perturbative approach that utilizes the dominant movement of the network stationary states in the state space. We quantify the distortions of the bump shape during tracking, and study their effects on the tracking performance. Results are obtained on the maximum speed for a moving stimulus to be trackable, and the reaction time to catch up an abrupt change in stimulus.

  19. Stationary radiation of objects with scattering media

    International Nuclear Information System (INIS)

    Vasil'eva, Inna A

    2001-01-01

    The radiation observed inside or outside a stationary radiator with a scattering medium is a sum of components, each being determined by, first, the primary radiation from some part of the radiator and, second, the probability of this radiation reaching the region where it is observed. In this review, general and rather simple relations between these components are discussed. These relations, unlike the components themselves, are independent of the specific optical characteristics of the object as well as of its geometry, inhomogeneity, etc. In deriving the relations, the situations in which geometrical optics is either applicable or inapplicable to radiation in a scattering medium are considered. For the case where geometrical optics does apply, stationary relations are derived from the probabilistic stationarity condition for radiation passing through the medium, i.e., from the fact that all radiation emitted in a stationary regime disappears with probability unity. Equilibrium relations are derived from the stationary relations in the particular case of a thermal radiator in an isothermal cavity. To derive the stationary relations in the geometrical optics approximation, we obtain general solutions of the linear equation of transfer using the Green function approach. If geometrical optics cannot be applied to a scattering and radiating medium, only relations for the components of outgoing thermal radiation are obtained, and the generalized Kirchhoff law, obtained by Levin and Rytov using statistical radio-physics methods, is employed. In this case, stationary relations are also derived from a probabilistic stationarity condition; the equilibrium relations follow from the stationary ones as well as from the equilibrium condition for radiation in the isothermal cavity. The quantities involved in all the relations obtained are a subject of experimental and computational spectroscopic studies. Examples of current and potential applications are given. The relations

  20. On the holistic approach in cellular and cancer biology: nonlinearity, complexity, and quasi-determinism of the dynamic cellular network.

    Science.gov (United States)

    Waliszewski, P; Molski, M; Konarski, J

    1998-06-01

    A keystone of the molecular reductionist approach to cellular biology is a specific deductive strategy relating genotype to phenotype-two distinct categories. This relationship is based on the assumption that the intermediary cellular network of actively transcribed genes and their regulatory elements is deterministic (i.e., a link between expression of a gene and a phenotypic trait can always be identified, and evolution of the network in time is predetermined). However, experimental data suggest that the relationship between genotype and phenotype is nonbijective (i.e., a gene can contribute to the emergence of more than just one phenotypic trait or a phenotypic trait can be determined by expression of several genes). This implies nonlinearity (i.e., lack of the proportional relationship between input and the outcome), complexity (i.e. emergence of the hierarchical network of multiple cross-interacting elements that is sensitive to initial conditions, possesses multiple equilibria, organizes spontaneously into different morphological patterns, and is controlled in dispersed rather than centralized manner), and quasi-determinism (i.e., coexistence of deterministic and nondeterministic events) of the network. Nonlinearity within the space of the cellular molecular events underlies the existence of a fractal structure within a number of metabolic processes, and patterns of tissue growth, which is measured experimentally as a fractal dimension. Because of its complexity, the same phenotype can be associated with a number of alternative sequences of cellular events. Moreover, the primary cause initiating phenotypic evolution of cells such as malignant transformation can be favored probabilistically, but not identified unequivocally. Thermodynamic fluctuations of energy rather than gene mutations, the material traits of the fluctuations alter both the molecular and informational structure of the network. Then, the interplay between deterministic chaos, complexity, self

  1. Chen-Nester-Tung quasi-local energy and Wang-Yau quasi-local mass

    Science.gov (United States)

    Liu, Jian-Liang; Yu, Chengjie

    2017-10-01

    In this paper, we show that the Chen-Nester-Tung (CNT) quasi-local energy with 4D isometric matching references is closely related to the Wang-Yau (WY) quasi-local energy. As a particular example, we compute the second variation of the CNT quasi-local energy for axially symmetric Kerr-like spacetimes with axially symmetric embeddings at the obvious critical point (0 , 0) and find that it is a saddle critical point in most of the cases. Also, as a byproduct, we generalize a previous result about the coincidence of the CNT quasi-local energy and Brown-York mass for axially symmetric Kerr-like spacetimes by Tam and the first author Liu and Tam (2016) to general spacetimes.

  2. Chaotic Bohmian trajectories for stationary states

    International Nuclear Information System (INIS)

    Cesa, Alexandre; Martin, John; Struyve, Ward

    2016-01-01

    In Bohmian mechanics, the nodes of the wave function play an important role in the generation of chaos. However, so far, most of the attention has been on moving nodes; little is known about the possibility of chaos in the case of stationary nodes. We address this question by considering stationary states, which provide the simplest examples of wave functions with stationary nodes. We provide examples of stationary wave functions for which there is chaos, as demonstrated by numerical computations, for one particle moving in three spatial dimensions and for two and three entangled particles in two dimensions. Our conclusion is that the motion of the nodes is not necessary for the generation of chaos. What is important is the overall complexity of the wave function. That is, if the wave function, or rather its phase, has a complex spatial variation, it will lead to complex Bohmian trajectories and hence to chaos. Another aspect of our work concerns the average Lyapunov exponent, which quantifies the overall amount of chaos. Since it is very hard to evaluate the average Lyapunov exponent analytically, which is often computed numerically, it is useful to have simple quantities that agree well with the average Lyapunov exponent. We investigate possible correlations with quantities such as the participation ratio and different measures of entanglement, for different systems and different families of stationary wave functions. We find that these quantities often tend to correlate to the amount of chaos. However, the correlation is not perfect, because, in particular, these measures do not depend on the form of the basis states used to expand the wave function, while the amount of chaos does. (paper)

  3. Design and implementation of a topology control scheme for wireless mesh networks

    CSIR Research Space (South Africa)

    Mudali, P

    2009-09-01

    Full Text Available The Wireless Mesh Network (WMN) backbone is usually comprised of stationary nodes but the transient nature of wireless links results in changing network topologies. Topology Control (TC) aims to preserve network connectivity in ad hoc and mesh...

  4. The stationary neutron radiography system

    International Nuclear Information System (INIS)

    Weeks, A.A.; Newell, D.L.; Heidel, C.C.

    1990-01-01

    To provide the high intensity neutron beam and support systems necessary for radiography, the Stationary Neutron Radiography System was constructed at McClellan Air Force Base. The Stationary Neutron Radiography System utilizes a one megawatt TRIGA reactor contained in an Aluminium tank surrounded by eight foot thick concrete walls. There are four neutron beam tubes at inclined angles from the reactor core to separate radiography bays. In three of the bays, robotic systems manipulate aircraft components in the neutron beam, while real-time imaging systems provide images concurrent with the irradiation. Film radiography of smaller components is performed in the remaining bay

  5. (Quasi-)Poisson enveloping algebras

    OpenAIRE

    Yang, Yan-Hong; Yao, Yuan; Ye, Yu

    2010-01-01

    We introduce the quasi-Poisson enveloping algebra and Poisson enveloping algebra for a non-commutative Poisson algebra. We prove that for a non-commutative Poisson algebra, the category of quasi-Poisson modules is equivalent to the category of left modules over its quasi-Poisson enveloping algebra, and the category of Poisson modules is equivalent to the category of left modules over its Poisson enveloping algebra.

  6. Boolean network representation of contagion dynamics during a financial crisis

    Science.gov (United States)

    Caetano, Marco Antonio Leonel; Yoneyama, Takashi

    2015-01-01

    This work presents a network model for representation of the evolution of certain patterns of economic behavior. More specifically, after representing the agents as points in a space in which each dimension associated to a relevant economic variable, their relative "motions" that can be either stationary or discordant, are coded into a boolean network. Patterns with stationary averages indicate the maintenance of status quo, whereas discordant patterns represent aggregation of new agent into the cluster or departure from the former policies. The changing patterns can be embedded into a network representation, particularly using the concept of autocatalytic boolean networks. As a case study, the economic tendencies of the BRIC countries + Argentina were studied. Although Argentina is not included in the cluster formed by BRIC countries, it tends to follow the BRIC members because of strong commercial ties.

  7. Grid Converters for Stationary Battery Energy Storage Systems

    DEFF Research Database (Denmark)

    Trintis, Ionut

    The integration of renewable energy sources in the power system, with high percentage, is a well known challenge nowadays. Power sources like wind and solar are highly volatile, with uctuations on various time scales. One long term solution is to build a continentwide or worldwide supergrid....... Another solution is to use distributed energy storage units, and create virtual power plants. Stationary energy storage is a complementary solution, which can postpone the network expansion and can be optimized for dierent kind of grid services. As an energy storage solution with timing for few seconds...... multilevel converter structure with integrated energy storage is introduced. This converter structure is suitable to interface low and medium voltage energy storage units to medium and high voltage grids. It can also interconnect a DC and AC grid with bidirectional power ow, were both can be backed...

  8. Quasi-Lie algebras and Lie groups

    International Nuclear Information System (INIS)

    Momo Bangoura

    2006-07-01

    In this work, we define the quasi-Poisson Lie quasigroups, dual objects to the quasi-Poisson Lie groups and we establish the correspondence between the local quasi-Poisson Lie quasigoups and quasi-Lie bialgebras (up to isomorphism). (author) [fr

  9. Non-stationary covariance function modelling in 2D least-squares collocation

    Science.gov (United States)

    Darbeheshti, N.; Featherstone, W. E.

    2009-06-01

    Standard least-squares collocation (LSC) assumes 2D stationarity and 3D isotropy, and relies on a covariance function to account for spatial dependence in the observed data. However, the assumption that the spatial dependence is constant throughout the region of interest may sometimes be violated. Assuming a stationary covariance structure can result in over-smoothing of, e.g., the gravity field in mountains and under-smoothing in great plains. We introduce the kernel convolution method from spatial statistics for non-stationary covariance structures, and demonstrate its advantage for dealing with non-stationarity in geodetic data. We then compared stationary and non- stationary covariance functions in 2D LSC to the empirical example of gravity anomaly interpolation near the Darling Fault, Western Australia, where the field is anisotropic and non-stationary. The results with non-stationary covariance functions are better than standard LSC in terms of formal errors and cross-validation against data not used in the interpolation, demonstrating that the use of non-stationary covariance functions can improve upon standard (stationary) LSC.

  10. Numerical Modeling of the Thomson Ring in Stationary Levitation Using FEM-Electrical Network and Newton-Raphson

    Directory of Open Access Journals (Sweden)

    Guzmán Juan

    2015-07-01

    Full Text Available There are a lot of applications of the Thomson ring: levitation of superconductor materials, power interrupters (used as actuator and elimination of electric arcs. Therefore, it is important the numerical modeling of Thomson ring. The aim of this work is to model the stationary levitation of the Thomson ring. This Thomson ring consists of a copper coil with ferromagnetic core and an aluminum ring threaded in the core. The coil is fed by a cosine voltage to ensure that the aluminum ring is in a stationary levitated position. In this situation, the state of the electromagnetic field is stable and can be used the phasor equations of the electromagnetic field. These equations are discretized using the Galerkin method in the Lagrange base space (finite element method, FEM. These equations are solved using the COMSOL software. A methodology is also described (which uses the Newton-Raphson method that obtains the separation between coil and aluminum ring. The numerical solutions of this separation are compared with experimental data. The conclusion is that the magnetic coupling of the aluminum ring on the coil can be neglected if the source voltage is high.

  11. Hermitian self-dual quasi-abelian codes

    Directory of Open Access Journals (Sweden)

    Herbert S. Palines

    2017-12-01

    Full Text Available Quasi-abelian codes constitute an important class of linear codes containing theoretically and practically interesting codes such as quasi-cyclic codes, abelian codes, and cyclic codes. In particular, the sub-class consisting of 1-generator quasi-abelian codes contains large families of good codes. Based on the well-known decomposition of quasi-abelian codes, the characterization and enumeration of Hermitian self-dual quasi-abelian codes are given. In the case of 1-generator quasi-abelian codes, we offer necessary and sufficient conditions for such codes to be Hermitian self-dual and give a formula for the number of these codes. In the case where the underlying groups are some $p$-groups, the actual number of resulting Hermitian self-dual quasi-abelian codes are determined.

  12. The quasi-equilibrium response of MOS structures: Quasi-static factor

    Science.gov (United States)

    Okeke, M.; Balland, B.

    1984-07-01

    The dynamic response of a MOS structure driven into a non-equilibrium behaviour by a voltage ramp is presented. In contrast to Khun's quasi-static technique it is shown that any ramp-driven MOS structure has some degree of non-equilibrium. A quasi staticity factor μAK which serves as a measure of the degree of quasi-equilibrium, has been introduced for the first time. The mathematical model presented in the paper allows a better explanation of the experimental recordings. It is shown that this model could be used to analyse the various features of the response of the structure and that such physical parameters as the generation-rate, trap activation energy, and the effective capture constants could be obtained.

  13. Quasi-periodic solutions of nonlinear beam equations with quintic quasi-periodic nonlinearities

    Directory of Open Access Journals (Sweden)

    Qiuju Tuo

    2015-01-01

    Full Text Available In this article, we consider the one-dimensional nonlinear beam equations with quasi-periodic quintic nonlinearities $$ u_{tt}+u_{xxxx}+(B+ \\varepsilon\\phi(tu^5=0 $$ under periodic boundary conditions, where B is a positive constant, $\\varepsilon$ is a small positive parameter, $\\phi(t$ is a real analytic quasi-periodic function in t with frequency vector $\\omega=(\\omega_1,\\omega_2,\\dots,\\omega_m$. It is proved that the above equation admits many quasi-periodic solutions by KAM theory and partial Birkhoff normal form.

  14. Estimating Biochemical Parameters of Tea (camellia Sinensis (L.)) Using Hyperspectral Techniques

    Science.gov (United States)

    Bian, M.; Skidmore, A. K.; Schlerf, M.; Liu, Y.; Wang, T.

    2012-07-01

    Tea (Camellia Sinensis (L.)) is an important economic crop and the market price of tea depends largely on its quality. This research aims to explore the potential of hyperspectral remote sensing on predicting the concentration of biochemical components, namely total tea polyphenols, as indicators of tea quality at canopy scale. Experiments were carried out for tea plants growing in the field and greenhouse. Partial least squares regression (PLSR), which has proven to be the one of the most successful empirical approach, was performed to establish the relationship between reflectance and biochemical concentration across six tea varieties in the field. Moreover, a novel integrated approach involving successive projections algorithms as band selection method and neural networks was developed and applied to detect the concentration of total tea polyphenols for one tea variety, in order to explore and model complex nonlinearity relationships between independent (wavebands) and dependent (biochemicals) variables. The good prediction accuracies (r2 > 0.8 and relative RMSEP < 10 %) achieved for tea plants using both linear (partial lease squares regress) and nonlinear (artificial neural networks) modelling approaches in this study demonstrates the feasibility of using airborne and spaceborne sensors to cover wide areas of tea plantation for in situ monitoring of tea quality cheaply and rapidly.

  15. Performance analyses of Z-source and quasi Z-source inverter for photovoltaic applications

    Science.gov (United States)

    Himabind, S.; Priya, T. Hari; Manjeera, Ch.

    2018-04-01

    This paper presents the comparative analysis of Z-source and Quasi Z-source converter for renewable energy applications. Due to the dependency of renewable energy sources on external weather conditions the output voltage, current changes accordingly which effects the performance of traditional voltage source and current source inverters connected across it. To overcome the drawbacks of VSI and CSI, Z-source and Quasi Z-source inverter (QZSI) are used, which can perform multiple tasks like ac-to-dc, dc-to-ac, ac-to-ac, dc-to-dc conversion. They can be used for both buck and boost operations, by utilizing the shoot-through zero state. The QZSI is derived from the ZSI topology, with a slight change in the impedance network and it overcomes the drawbacks of ZSI. The QZSI draws a constant current from the source when compared to ZSI. A comparative analysis is performed between Z-source and Quasi Z-source inverter, simulation is performed in MATLAB/Simulink environment.

  16. Non-stationary condition monitoring through event alignment

    DEFF Research Database (Denmark)

    Pontoppidan, Niels Henrik; Larsen, Jan

    2004-01-01

    We present an event alignment framework which enables change detection in non-stationary signals. change detection. Classical condition monitoring frameworks have been restrained to laboratory settings with stationary operating conditions, which are not resembling real world operation....... In this paper we apply the technique for non-stationary condition monitoring of large diesel engines based on acoustical emission sensor signals. The performance of the event alignment is analyzed in an unsupervised probabilistic detection framework based on outlier detection with either Principal Component...... Analysis or Gaussian Processes modeling. We are especially interested in the true performance of the condition monitoring performance with mixed aligned and unaligned data, e.g. detection of fault condition of unaligned examples versus false alarms of aligned normal condition data. Further, we expect...

  17. Schrodinger's catapult II: entanglement between stationary and flying fields

    Science.gov (United States)

    Pfaff, W.; Axline, C.; Burkhart, L.; Vool, U.; Reinhold, P.; Frunzio, L.; Jiang, L.; Devoret, M.; Schoelkopf, R.

    Entanglement between nodes is an elementary resource in a quantum network. An important step towards its realization is entanglement between stationary and flying states. Here we experimentally demonstrate entanglement generation between a long-lived cavity memory and traveling mode in circuit QED. A large on/off ratio and fast control over a parametric mixing process allow us to realize conversion with tunable magnitude and duration between standing and flying mode. In the case of half-conversion, we observe correlations between the standing and flying state that confirm the generation of entangled states. We show this for both single-photon and multi-photon states, paving the way for error-correctable remote entanglement. Our system could serve as an essential component in a modular architecture for error-protected quantum information processing.

  18. Evaluation of stationary and non-stationary geostatistical models for inferring hydraulic conductivity values at Aespoe

    International Nuclear Information System (INIS)

    La Pointe, P.R.

    1994-11-01

    This report describes the comparison of stationary and non-stationary geostatistical models for the purpose of inferring block-scale hydraulic conductivity values from packer tests at Aespoe. The comparison between models is made through the evaluation of cross-validation statistics for three experimental designs. The first experiment consisted of a 'Delete-1' test previously used at Finnsjoen. The second test consisted of 'Delete-10%' and the third test was a 'Delete-50%' test. Preliminary data analysis showed that the 3 m and 30 m packer test data can be treated as a sample from a single population for the purposes of geostatistical analyses. Analysis of the 3 m data does not indicate that there are any systematic statistical changes with depth, rock type, fracture zone vs non-fracture zone or other mappable factor. Directional variograms are ambiguous to interpret due to the clustered nature of the data, but do not show any obvious anisotropy that should be accounted for in geostatistical analysis. Stationary analysis suggested that there exists a sizeable spatially uncorrelated component ('Nugget Effect') in the 3 m data, on the order of 60% of the observed variance for the various models fitted. Four different nested models were automatically fit to the data. Results for all models in terms of cross-validation statistics were very similar for the first set of validation tests. Non-stationary analysis established that both the order of drift and the order of the intrinsic random functions is low. This study also suggests that conventional cross-validation studies and automatic variogram fitting are not necessarily evaluating how well a model will infer block scale hydraulic conductivity values. 20 refs, 20 figs, 14 tabs

  19. Scale-up of counter-current chromatography: demonstration of predictable isocratic and quasi-continuous operating modes from the test tube to pilot/process scale.

    Science.gov (United States)

    Sutherland, Ian; Hewitson, Peter; Ignatova, Svetlana

    2009-12-11

    Predictable scale-up from test tube derived distribution ratios and analytical-scale sample loading optimisation is demonstrated using a model sample system of benzyl alcohol and p-cresol in a heptane:ethyl acetate:methanol:water phase system with the new 18 L Maxi counter-current chromatography centrifuge. The versatility of having a liquid stationary phase with its high loading capacity and flexible operating modes is demonstrated at two different scales by separating and concentrating target compounds using a mixture of caffeine, vanillin, naringenin and carvone using a quasi-continuous technique called intermittent counter-current extraction.

  20. Arrival first queueing networks with applications in kanban production systems

    NARCIS (Netherlands)

    Boucherie, R.J.; Chao, X.; Miyazawa, M.

    2001-01-01

    In this paper we introduce a new class of queueing networks called {\\it arrival first networks}. We characterise its transition rates and derive the relationship between arrival rules, linear partial balance equations, and product form stationary distributions. This model is motivated by production

  1. Arrival first queueing networks with applications in kanban production systems

    NARCIS (Netherlands)

    Boucherie, Richardus J.; Chao, X.; Miyazawa, M.

    2003-01-01

    In this paper, we introduce a new class of queueing networks called arrival first networks. We characterise its transition rates and derive the relationship between arrival rules, linear partial balance equations, and product form stationary distributions. This model is motivated by production

  2. Influence of Stationary Crossflow Modulation on Secondary Instability

    Science.gov (United States)

    Choudhari, Meelan M.; Li, Fei; Paredes, Pedro

    2016-01-01

    A likely scenario for swept wing transition on subsonic aircraft with natural laminar flow involves the breakdown of stationary crossflow vortices via high frequency secondary instability. A majority of the prior research on this secondary instability has focused on crossflow vortices with a single dominant spanwise wavelength. This paper investigates the effects of the spanwise modulation of stationary crossflow vortices at a specified wavelength by a subharmonic stationary mode. Secondary instability of the modulated crossflow pattern is studied using planar, partial-differential-equation based eigenvalue analysis. Computations reveal that weak modulation by the first subharmonic of the input stationary mode leads to mode splitting that is particularly obvious for Y-type secondary modes that are driven by the wall-normal shear of the basic state. Thus, for each Y mode corresponding to the fundamental wavelength of results in unmodulated train of crossflow vortices, the modulated flow supports a pair of secondary modes with somewhat different amplification rates. The mode splitting phenomenon suggests that a more complex stationary modulation such as that induced by natural surface roughness would yield a considerably richer spectrum of secondary instability modes. Even modest levels of subharmonic modulation are shown to have a strong effect on the overall amplification of secondary disturbances, particularly the Z-modes driven by the spanwise shear of the basic state. Preliminary computations related to the nonlinear breakdown of these secondary disturbances provide interesting insights into the process of crossflow transition in the presence of the first subharmonic of the dominant stationary vortex.

  3. A Mobile Asset Tracking System Architecture under Mobile-Stationary Co-Existing WSNs

    Science.gov (United States)

    Kim, Tae Hyon; Jo, Hyeong Gon; Lee, Jae Shin; Kang, Soon Ju

    2012-01-01

    The tracking of multiple wireless mobile nodes is not easy with current legacy WSN technologies, due to their inherent technical complexity, especially when heavy traffic and frequent movement of mobile nodes are encountered. To enable mobile asset tracking under these legacy WSN systems, it is necessary to design a specific system architecture that can manage numerous mobile nodes attached to mobile assets. In this paper, we present a practical system architecture including a communication protocol, a three-tier network, and server-side middleware for mobile asset tracking in legacy WSNs consisting of mobile-stationary co-existing infrastructures, and we prove the functionality of this architecture through careful evaluation in a test bed. Evaluation was carried out in a microwave anechoic chamber as well as on a straight road near our office. We evaluated communication mobility performance between mobile and stationary nodes, location-awareness performance, system stability under numerous mobile node conditions, and the successful packet transfer rate according to the speed of the mobile nodes. The results indicate that the proposed architecture is sufficiently robust for application in realistic mobile asset tracking services that require a large number of mobile nodes. PMID:23242277

  4. A Mobile Asset Tracking System Architecture under Mobile-Stationary Co-Existing WSNs

    Directory of Open Access Journals (Sweden)

    Soon Ju Kang

    2012-12-01

    Full Text Available The tracking of multiple wireless mobile nodes is not easy with current legacy WSN technologies, due to their inherent technical complexity, especially when heavy traffic and frequent movement of mobile nodes are encountered. To enable mobile asset tracking under these legacy WSN systems, it is necessary to design a specific system architecture that can manage numerous mobile nodes attached to mobile assets. In this paper, we present a practical system architecture including a communication protocol, a three-tier network, and server-side middleware for mobile asset tracking in legacy WSNs consisting of mobile-stationary co-existing infrastructures, and we prove the functionality of this architecture through careful evaluation in a test bed. Evaluation was carried out in a microwave anechoic chamber as well as on a straight road near our office. We evaluated communication mobility performance between mobile and stationary nodes, location-awareness performance, system stability under numerous mobile node conditions, and the successful packet transfer rate according to the speed of the mobile nodes. The results indicate that the proposed architecture is sufficiently robust for application in realistic mobile asset tracking services that require a large number of mobile nodes.

  5. Theory of quasi-spherical accretion in X-ray pulsars

    Science.gov (United States)

    Shakura, N.; Postnov, K.; Kochetkova, A.; Hjalmarsdotter, L.

    2012-02-01

    A theoretical model for quasi-spherical subsonic accretion on to slowly rotating magnetized neutron stars is constructed. In this model, the accreting matter subsonically settles down on to the rotating magnetosphere forming an extended quasi-static shell. This shell mediates the angular momentum removal from the rotating neutron star magnetosphere during spin-down episodes by large-scale convective motions. The accretion rate through the shell is determined by the ability of the plasma to enter the magnetosphere. The settling regime of accretion can be realized for moderate accretion rates ? g s-1. At higher accretion rates, a free-fall gap above the neutron star magnetosphere appears due to rapid Compton cooling, and accretion becomes highly non-stationary. From observations of the spin-up/spin-down rates (the angular rotation frequency derivative ?, and ? near the torque reversal) of X-ray pulsars with known orbital periods, it is possible to determine the main dimensionless parameters of the model, as well as to estimate the magnetic field of the neutron star. We illustrate the model by determining these parameters for three wind-fed X-ray pulsars GX 301-2, Vela X-1 and GX 1+4. The model explains both the spin-up/spin-down of the pulsar frequency on large time-scales and the irregular short-term frequency fluctuations, which can correlate or anticorrelate with the X-ray flux fluctuations in different systems. It is shown that in real pulsars an almost iso-angular-momentum rotation law with ω˜ 1/R2, due to strongly anisotropic radial turbulent motions sustained by large-scale convection, is preferred.

  6. Biochemical component identification by plasmonic improved whispering gallery mode optical resonance based sensor

    Science.gov (United States)

    Saetchnikov, Vladimir A.; Tcherniavskaia, Elina A.; Saetchnikov, Anton V.; Schweiger, Gustav; Ostendorf, Andreas

    2014-05-01

    Experimental data on detection and identification of variety of biochemical agents, such as proteins, microelements, antibiotic of different generation etc. in both single and multi component solutions under varied in wide range concentration analyzed on the light scattering parameters of whispering gallery mode optical resonance based sensor are represented. Multiplexing on parameters and components has been realized using developed fluidic sensor cell with fixed in adhesive layer dielectric microspheres and data processing. Biochemical component identification has been performed by developed network analysis techniques. Developed approach is demonstrated to be applicable both for single agent and for multi component biochemical analysis. Novel technique based on optical resonance on microring structures, plasmon resonance and identification tools has been developed. To improve a sensitivity of microring structures microspheres fixed by adhesive had been treated previously by gold nanoparticle solution. Another technique used thin film gold layers deposited on the substrate below adhesive. Both biomolecule and nanoparticle injections caused considerable changes of optical resonance spectra. Plasmonic gold layers under optimized thickness also improve parameters of optical resonance spectra. Biochemical component identification has been also performed by developed network analysis techniques both for single and for multi component solution. So advantages of plasmon enhancing optical microcavity resonance with multiparameter identification tools is used for development of a new platform for ultra sensitive label-free biomedical sensor.

  7. Complexity of generic biochemical circuits: topology versus strength of interactions

    Science.gov (United States)

    Tikhonov, Mikhail; Bialek, William

    2016-12-01

    The historical focus on network topology as a determinant of biological function is still largely maintained today, illustrated by the rise of structure-only approaches to network analysis. However, biochemical circuits and genetic regulatory networks are defined both by their topology and by a multitude of continuously adjustable parameters, such as the strength of interactions between nodes, also recognized as important. Here we present a class of simple perceptron-based Boolean models within which comparing the relative importance of topology versus interaction strengths becomes a quantitatively well-posed problem. We quantify the intuition that for generic networks, optimization of interaction strengths is a crucial ingredient of achieving high complexity, defined here as the number of fixed points the network can accommodate. We propose a new methodology for characterizing the relative role of parameter optimization for topologies of a given class.

  8. Computing motion using resistive networks

    Science.gov (United States)

    Koch, Christof; Luo, Jin; Mead, Carver; Hutchinson, James

    1988-01-01

    Recent developments in the theory of early vision are described which lead from the formulation of the motion problem as an ill-posed one to its solution by minimizing certain 'cost' functions. These cost or energy functions can be mapped onto simple analog and digital resistive networks. It is shown how the optical flow can be computed by injecting currents into resistive networks and recording the resulting stationary voltage distribution at each node. These networks can be implemented in cMOS VLSI circuits and represent plausible candidates for biological vision systems.

  9. Mean field interaction in biochemical reaction networks

    KAUST Repository

    Tembine, Hamidou; Tempone, Raul; Vilanova, Pedro

    2011-01-01

    In this paper we establish a relationship between chemical dynamics and mean field game dynamics. We show that chemical reaction networks can be studied using noisy mean field limits. We provide deterministic, noisy and switching mean field limits

  10. STABLE STATIONARY STATES OF NON-LOCAL INTERACTION EQUATIONS

    KAUST Repository

    FELLNER, KLEMENS

    2010-12-01

    In this paper, we are interested in the large-time behaviour of a solution to a non-local interaction equation, where a density of particles/individuals evolves subject to an interaction potential and an external potential. It is known that for regular interaction potentials, stable stationary states of these equations are generically finite sums of Dirac masses. For a finite sum of Dirac masses, we give (i) a condition to be a stationary state, (ii) two necessary conditions of linear stability w.r.t. shifts and reallocations of individual Dirac masses, and (iii) show that these linear stability conditions imply local non-linear stability. Finally, we show that for regular repulsive interaction potential Wε converging to a singular repulsive interaction potential W, the Dirac-type stationary states ρ̄ ε approximate weakly a unique stationary state ρ̄ ∈ L∞. We illustrate our results with numerical examples. © 2010 World Scientific Publishing Company.

  11. The spectral analysis of cyclo-non-stationary signals

    Science.gov (United States)

    Abboud, D.; Baudin, S.; Antoni, J.; Rémond, D.; Eltabach, M.; Sauvage, O.

    2016-06-01

    Condition monitoring of rotating machines in speed-varying conditions remains a challenging task and an active field of research. Specifically, the produced vibrations belong to a particular class of non-stationary signals called cyclo-non-stationary: although highly non-stationary, they contain hidden periodicities related to the shaft angle; the phenomenon of long term modulations is what makes them different from cyclostationary signals which are encountered under constant speed regimes. In this paper, it is shown that the optimal way of describing cyclo-non-stationary signals is jointly in the time and the angular domains. While the first domain describes the waveform characteristics related to the system dynamics, the second one reveals existing periodicities linked to the system kinematics. Therefore, a specific class of signals - coined angle-time cyclostationary is considered, expressing the angle-time interaction. Accordingly, the related spectral representations, the order-frequency spectral correlation and coherence functions are proposed and their efficiency is demonstrated on two industrial cases.

  12. Quasi-perpendicular/quasi-parallel divisions of Earth's bow shock

    International Nuclear Information System (INIS)

    Greenstadt, E.W.

    1991-01-01

    Computer-drawn diagrams of the boundaries between quasi-perpendicular and quasi-parallel areas of Earth's bow shock are displayed for a few selected cone angles of static interplanetary magnetic field (IMF). The effect on the boundary of variable IMF in the foreshock is also discussed and shown for one nominal case. The boundaries demand caution in applying them to the realistic, dynamic conditions of the solar wind and in interpreting the effects of small cone angles on the distributions of structures at the shock. However, the calculated, first-order boundaries are helpful in defining areas of the shock where contributions from active structures inherent in quasi-parallel geometry may be distinguishable from those derived secondarily from upstream reflected ion dynamics. The boundaries are also compatible with known behavior of daytime ULF geomagnetic waves and pulsations according to models postulating that cone angle-controlled, time-dependent ULF activity around the subsolar point of the bow shock provides the source of geomagnetic excitation

  13. Assimilation of time-averaged observations in a quasi-geostrophic atmospheric jet model

    Energy Technology Data Exchange (ETDEWEB)

    Huntley, Helga S. [University of Washington, Department of Applied Mathematics, Seattle, WA (United States); University of Delaware, School of Marine Science and Policy, Newark, DE (United States); Hakim, Gregory J. [University of Washington, Department of Atmospheric Sciences, Seattle, WA (United States)

    2010-11-15

    The problem of reconstructing past climates from a sparse network of noisy time-averaged observations is considered with a novel ensemble Kalman filter approach. Results for a sparse network of 100 idealized observations for a quasi-geostrophic model of a jet interacting with a mountain reveal that, for a wide range of observation averaging times, analysis errors are reduced by about 50% relative to the control case without assimilation. Results are robust to changes to observational error, the number of observations, and an imperfect model. Specifically, analysis errors are reduced relative to the control case for observations having errors up to three times the climatological variance for a fixed 100-station network, and for networks consisting of ten or more stations when observational errors are fixed at one-third the climatological variance. In the limit of small numbers of observations, station location becomes critically important, motivating an optimally determined network. A network of fifteen optimally determined observations reduces analysis errors by 30% relative to the control, as compared to 50% for a randomly chosen network of 100 observations. (orig.)

  14. Modeling of Hydraulic Fracture Propagation at the kISMET Site Using a Fully Coupled 3D Network-Flow and Quasi- Static Discrete Element Model

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, Jing [Idaho National Lab. (INL), Idaho Falls, ID (United States); Huang, Hai [Idaho National Lab. (INL), Idaho Falls, ID (United States); Mattson, Earl [Idaho National Lab. (INL), Idaho Falls, ID (United States); Wang, Herb F. [Univ. of Wisconsin, Madison, WI (United States); Haimson, Bezalel C. [Univ. of Wisconsin, Madison, WI (United States); Doe, Thomas W. [Golder Associates Inc., Redmond, VA (United States); Oldenburg, Curtis M. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Dobson, Patrick F. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2017-02-01

    Aimed at supporting the design of hydraulic fracturing experiments at the kISMET site, ~1500 m below ground in a deep mine, we performed pre-experimental hydraulic fracturing simulations in order to estimate the breakdown pressure, propagation pressure, fracture geometry, and the magnitude of induced seismicity using a newly developed fully coupled three-dimensional (3D) network flow and quasi-static discrete element model (DEM). The quasi-static DEM model, which is constructed by Delaunay tessellation of the rock volume, considers rock fabric heterogeneities by using the “disordered” DEM mesh and adding random perturbations to the stiffness and tensile/shear strengths of individual DEM elements and the elastic beams between them. A conjugate 3D flow network based on the DEM lattice is constructed to calculate the fluid flow in both the fracture and porous matrix. One distinctive advantage of the model is that fracturing is naturally described by the breakage of elastic beams between DEM elements. It is also extremely convenient to introduce mechanical anisotropy into the model by simply assigning orientation-dependent tensile/shear strengths to the elastic beams. In this paper, the 3D hydraulic fracturing model was verified against the analytic solution for a penny-shaped crack model. We applied the model to simulate fracture propagation from a vertical open borehole based on initial estimates of rock mechanical properties and in-situ stress conditions. The breakdown pressure and propagation pressure are directly obtained from the simulation. In addition, the released elastic strain energies of individual fracturing events were calculated and used as a conservative estimate for the magnitudes of the potential induced seismic activities associated with fracturing. The comparisons between model predictions and experimental results are still ongoing.

  15. Modelling of Hydrophilic Interaction Liquid Chromatography Stationary Phases Using Chemometric Approaches

    Science.gov (United States)

    Ortiz-Villanueva, Elena; Tauler, Romà

    2017-01-01

    Metabolomics is a powerful and widely used approach that aims to screen endogenous small molecules (metabolites) of different families present in biological samples. The large variety of compounds to be determined and their wide diversity of physical and chemical properties have promoted the development of different types of hydrophilic interaction liquid chromatography (HILIC) stationary phases. However, the selection of the most suitable HILIC stationary phase is not straightforward. In this work, four different HILIC stationary phases have been compared to evaluate their potential application for the analysis of a complex mixture of metabolites, a situation similar to that found in non-targeted metabolomics studies. The obtained chromatographic data were analyzed by different chemometric methods to explore the behavior of the considered stationary phases. ANOVA-simultaneous component analysis (ASCA), principal component analysis (PCA) and partial least squares regression (PLS) were used to explore the experimental factors affecting the stationary phase performance, the main similarities and differences among chromatographic conditions used (stationary phase and pH) and the molecular descriptors most useful to understand the behavior of each stationary phase. PMID:29064436

  16. Thermodynamics of quasi-topological cosmology

    International Nuclear Information System (INIS)

    Dehghani, M.H.; Sheykhi, A.; Dehghani, R.

    2013-01-01

    In this Letter, we study thermodynamical properties of the apparent horizon in a universe governed by quasi-topological gravity. Our aim is twofold. First, by using the variational method we derive the general form of Friedmann equation in quasi-topological gravity. Then, by applying the first law of thermodynamics on the apparent horizon, after using the entropy expression associated with the black hole horizon in quasi-topological gravity, and replacing the horizon radius, r + , with the apparent horizon radius, r -tilde A , we derive the corresponding Friedmann equation in quasi-topological gravity. We find that these two different approaches yield the same result which shows the profound connection between the first law of thermodynamics and the gravitational field equations of quasi-topological gravity. We also study the validity of the generalized second law of thermodynamics in quasi-topological cosmology. We find that, with the assumption of the local equilibrium hypothesis, the generalized second law of thermodynamics is fulfilled for the universe enveloped by the apparent horizon for the late time cosmology

  17. Computing molecular fluctuations in biochemical reaction systems based on a mechanistic, statistical theory of irreversible processes.

    Science.gov (United States)

    Kulasiri, Don

    2011-01-01

    We discuss the quantification of molecular fluctuations in the biochemical reaction systems within the context of intracellular processes associated with gene expression. We take the molecular reactions pertaining to circadian rhythms to develop models of molecular fluctuations in this chapter. There are a significant number of studies on stochastic fluctuations in intracellular genetic regulatory networks based on single cell-level experiments. In order to understand the fluctuations associated with the gene expression in circadian rhythm networks, it is important to model the interactions of transcriptional factors with the E-boxes in the promoter regions of some of the genes. The pertinent aspects of a near-equilibrium theory that would integrate the thermodynamical and particle dynamic characteristics of intracellular molecular fluctuations would be discussed, and the theory is extended by using the theory of stochastic differential equations. We then model the fluctuations associated with the promoter regions using general mathematical settings. We implemented ubiquitous Gillespie's algorithms, which are used to simulate stochasticity in biochemical networks, for each of the motifs. Both the theory and the Gillespie's algorithms gave the same results in terms of the time evolution of means and variances of molecular numbers. As biochemical reactions occur far away from equilibrium-hence the use of the Gillespie algorithm-these results suggest that the near-equilibrium theory should be a good approximation for some of the biochemical reactions. © 2011 Elsevier Inc. All rights reserved.

  18. Exponentially Stable Stationary Solutions for Stochastic Evolution Equations and Their Perturbation

    International Nuclear Information System (INIS)

    Caraballo, Tomas; Kloeden, Peter E.; Schmalfuss, Bjoern

    2004-01-01

    We consider the exponential stability of stochastic evolution equations with Lipschitz continuous non-linearities when zero is not a solution for these equations. We prove the existence of anon-trivial stationary solution which is exponentially stable, where the stationary solution is generated by the composition of a random variable and the Wiener shift. We also construct stationary solutions with the stronger property of attracting bounded sets uniformly. The existence of these stationary solutions follows from the theory of random dynamical systems and their attractors. In addition, we prove some perturbation results and formulate conditions for the existence of stationary solutions for semilinear stochastic partial differential equations with Lipschitz continuous non-linearities

  19. Quasi-experimental study designs series-paper 13: realizing the full potential of quasi-experiments for health research.

    Science.gov (United States)

    Rockers, Peter C; Tugwell, Peter; Røttingen, John-Arne; Bärnighausen, Till

    2017-09-01

    Although the number of quasi-experiments conducted by health researchers has increased in recent years, there clearly remains unrealized potential for using these methods for causal evaluation of health policies and programs globally. This article proposes five prescriptions for capturing the full value of quasi-experiments for health research. First, new funding opportunities targeting proposals that use quasi-experimental methods should be made available to a broad pool of health researchers. Second, administrative data from health programs, often amenable to quasi-experimental analysis, should be made more accessible to researchers. Third, training in quasi-experimental methods should be integrated into existing health science graduate programs to increase global capacity to use these methods. Fourth, clear guidelines for primary research and synthesis of evidence from quasi-experiments should be developed. Fifth, strategic investments should be made to continue to develop new innovations in quasi-experimental methodologies. Tremendous opportunities exist to expand the use of quasi-experimental methods to increase our understanding of which health programs and policies work and which do not. Health researchers should continue to expand their commitment to rigorous causal evaluation with quasi-experimental methods, and international institutions should increase their support for these efforts. Copyright © 2017 Elsevier Inc. All rights reserved.

  20. Table of members of quasi-bands

    International Nuclear Information System (INIS)

    Sakai, Mitsuo.

    1984-04-01

    The probable members of the quasi-bands in even-even nuclei for Z between 6 and 100 are listed in this table. The terms quasi-bands have been introduced in the so-called spherical regions as the counter parts of the collective bands in the deformed regions. In the present compilation, the data for deformed nuclei are classified for convenience under the same titles, Quasi-Ground Band, Quasi-Beta Band and Quasi-Gamma Band, as are used for other nuclear regions. The present edition covers the literature through September, 1983. Fifteen newly discovered nuclides are included. The classification of energy level into quasi-bands is made on the basis of the systematic trend in the data over large groups of nuclei. (Kato, T.)

  1. New Non-Stationary Gradient Model of Heat-Mass-Electric Charge Transfer in Thin Porous Media

    Directory of Open Access Journals (Sweden)

    V. Rogankov

    2017-10-01

    Full Text Available The well-known complicated system of non-equilibrium balance equations for a continuous fluid (f medium needs the new non-Gibbsian model of f-phase to be applicable for description of the heterogeneous porous media (PMs. It should be supplemented by the respective coupled thermal and caloric equations of state (EOS developed specially for PMs to become adequate and solvable for the irreversible transport f-processes. The set of standard assumptions adopted by the linear (or quasi-linear non-equilibrium thermodynamics are based on the empirical gradient-caused correlations between flows and forces. It leads, in particular, to the oversimplified stationary solutions for PMs. The most questionable but typical modeling suppositions of the stationary gradient (SG theory are: 1 the assumption of incompressibility accepted, as a rule, for f-flows; 2 the ignorance of distinctions between the hydrophilic and hydrophobic influence of a porous matrix on the properties; 3 the omission of effects arising due to the concomitant phase intra-porous transitions between the neighboring f-fragments with the sharp differences in densities; 4 the use of exclusively Gibbsian (i.e. homogeneous and everywhere differentiable description of any f-phase in PM; 5 the very restrictive reduction of the mechanical velocity field to its specific potential form in the balance equation of f-motion as well as of the heat velocity field in the balance equation of internal energy; 6 the neglect of the new specific peculiarities arising due to the study of any non-equilibrium PM in the meso- and nano-scales of a finite-size macroscopic (N,V-system of discrete particles. This work is an attempt to develop the alternative non-stationary gradient (NSG model of real irreversible processes in PM. Another aim is to apply it without the above restrictions 1-6 to the description of f-flows through the obviously non-Gibbsian thin porous medium (TPM. We will suppose that it is composed by two

  2. Quasi-gas dynamic equations

    CERN Document Server

    Elizarova, Tatiana G

    2009-01-01

    This book presents two interconnected mathematical models generalizing the Navier-Stokes system. The models, called the quasi-gas-dynamic and quasi-hydrodynamic equations, are then used as the basis of numerical methods solving gas- and fluid-dynamic problems.

  3. A new quasi-stationary, very high density plasma regime on the W7-AS stellarator

    International Nuclear Information System (INIS)

    Jaenicke, R; Baeumel, S; Baldzuhn, J; Brakel, R; Burhenn, R; Ehmler, H; Endler, M; Erckmann, V; Feng, Y; Gadelmeier, F; Geiger, J; Giannone, L; Grigull, P; Hartfuss, H J; Hartmann, D; Hildebrandt, D; Hirsch, M; Holzhauer, E; Kick, M; Kisslinger, J; Klinger, T; Klose, S; Knauer, J; Koenig, R; Kuehner, G; Laqua, H; Maassberg, H; McCormick, K; Narayanan, R; Niedermeyer, H; Pasch, E; Ruhs, N; Rust, N; Saffert, J; Sardei, F; Schneider, F; Schubert, M; Speth, E; Wagner, F; Weller, A; Wenzel, U; Werner, A; Wuersching, E

    2002-01-01

    Stellarators have the intrinsic property of steady state operation. However, on present-day stellarators the pulse length is usually not only limited due to technical reasons, but also by physical problems. Lack of density control and a subsequent radiation collapse terminate the discharges quite often at high densities. To improve the control of the plasma-wall interaction, the island divertor concept was developed for optimized stellarators. To test this divertor concept on W7-AS, all limiters were removed and replaced by ten divertor modules. In subsequent divertor experiments a promising new plasma operational regime has been discovered which is termed 'high density H-mode' (HDH-mode). During the transition into that regime a clear reduction of ELM-like events and turbulent fluctuations is observed. The HDH-mode combines good energy confinement with very low impurity confinement resulting in low core radiation, but high edge-localized radiation. Consequently, stationary discharges at densities of typically 2x10 20 m -3 can be performed within the accessible pulse length of about 1 s. At densities above 3x10 20 m -3 a controlled transition from attached to partially detached plasmas is observed. The still edge-localized radiation reaches 90% of the heating power so that the power load onto the divertor target plates is further reduced. At a lower toroidal field of 0.9 T average β-values could be raised from earlier 2% to more than 3% in magnetic field configurations with rather smooth flux surfaces at the plasma boundary. The recently obtained results render excellent prospects for W7-X, the larger superconducting successor experiment of W7-AS

  4. Quasi-steady State Reduction of Molecular Motor-Based Models of Directed Intermittent Search

    KAUST Repository

    Newby, Jay M.

    2010-02-19

    We present a quasi-steady state reduction of a linear reaction-hyperbolic master equation describing the directed intermittent search for a hidden target by a motor-driven particle moving on a one-dimensional filament track. The particle is injected at one end of the track and randomly switches between stationary search phases and mobile nonsearch phases that are biased in the anterograde direction. There is a finite possibility that the particle fails to find the target due to an absorbing boundary at the other end of the track. Such a scenario is exemplified by the motor-driven transport of vesicular cargo to synaptic targets located on the axon or dendrites of a neuron. The reduced model is described by a scalar Fokker-Planck (FP) equation, which has an additional inhomogeneous decay term that takes into account absorption by the target. The FP equation is used to compute the probability of finding the hidden target (hitting probability) and the corresponding conditional mean first passage time (MFPT) in terms of the effective drift velocity V, diffusivity D, and target absorption rate λ of the random search. The quasi-steady state reduction determines V, D, and λ in terms of the various biophysical parameters of the underlying motor transport model. We first apply our analysis to a simple 3-state model and show that our quasi-steady state reduction yields results that are in excellent agreement with Monte Carlo simulations of the full system under physiologically reasonable conditions. We then consider a more complex multiple motor model of bidirectional transport, in which opposing motors compete in a "tug-of-war", and use this to explore how ATP concentration might regulate the delivery of cargo to synaptic targets. © 2010 Society for Mathematical Biology.

  5. Culture of Desmodesmus communis (E.Hegewald E.Hegewald and Its Determination of the Biochemical Properties

    Directory of Open Access Journals (Sweden)

    Rıza Akgül

    2017-04-01

    Full Text Available In this study, culture medium and growth conditions were detected for Desmodesmus communis (E. Hegewald E. Hegewald (Sphaeropleales with KF470792 Accession Number that isolated from Thrace inland water (Bahçedere Stream, Tekirdağ, Turkey and determined by molecular taxonomy techniques. The microalgae was cultured under detected conditions (nutrients, pH, temperature, light density and aeration and when the culture was reached to stationary phase microalgae biomass was harvested for biochemical analysis. Total protein, total lipid, fatty acid and amino acid compositions, vitamin E amounts and variety were detected. Cell density was 9.76x105 colony/ml; dry biomass was 0.762 g/l; chlorophyll-a was 13.3 mg/l in BG11 culture medium (7.5 pH, 24±2ºC, 500 ml/min. aeration. According to biochemical analysis; total protein amount was 42.59% (dw/w; total lipid amount was 5.23% (dw/w and vitamin E amount was 3694.24 µg/glipid. The most abundant fatty acid was linolenic acid (35.18%; amino acid was glutamic acid (46.9 mg/g.

  6. Quasi Ornstein-Uhlenbeck processes

    DEFF Research Database (Denmark)

    Barndorff-Nielsen, Ole Eiler; Basse-O'Connor, Andreas

    The question of existence and properties of stationary solutions to Langevin equations driven by noise processes with stationary increments is discussed, with particular focus on noise processes of pseudo moving average type. On account of the Wold-Karhunen decomposition theorem such solutions...... of the associated autocorrelation functions, both for small and large lags. Applications to Gaussian and Lévy driven fractional Ornstein-Uhlenbeck processes are presented. As an element in the derivations a Fubini theorem for Lévy bases is established....

  7. Quasi Ornstein-Uhlenbeck processes

    DEFF Research Database (Denmark)

    Barndorff-Nielsen, Ole Eiler; Basse-O'Connor, Andreas

    2011-01-01

    The question of existence and properties of stationary solutions to Langevin equations driven by noise processes with stationary increments is discussed, with particular focus on noise processes of pseudo-moving-average type. On account of the Wold–Karhunen decomposition theorem, such solutions are...... of the associated autocorrelation functions, both for small and large lags. Applications to Gaussian- and Lévy-driven fractional Ornstein–Uhlenbeck processes are presented. A Fubini theorem for Lévy bases is established as an element in the derivations....

  8. Non-Stationary Dependence Structures for Spatial Extremes

    KAUST Repository

    Huser, Raphaël

    2016-03-03

    Max-stable processes are natural models for spatial extremes because they provide suitable asymptotic approximations to the distribution of maxima of random fields. In the recent past, several parametric families of stationary max-stable models have been developed, and fitted to various types of data. However, a recurrent problem is the modeling of non-stationarity. In this paper, we develop non-stationary max-stable dependence structures in which covariates can be easily incorporated. Inference is performed using pairwise likelihoods, and its performance is assessed by an extensive simulation study based on a non-stationary locally isotropic extremal t model. Evidence that unknown parameters are well estimated is provided, and estimation of spatial return level curves is discussed. The methodology is demonstrated with temperature maxima recorded over a complex topography. Models are shown to satisfactorily capture extremal dependence.

  9. Regulation of expression and biochemical characterization of a beta-class carbonic anhydrase from the plant growth-promoting rhizobacterium, Azospirillum brasilense Sp7.

    Science.gov (United States)

    Kaur, Simarjot; Mishra, Mukti Nath; Tripathi, Anil K

    2009-10-01

    Carbonic anhydrase (CA; [EC 4.2.1.1]) is a ubiquitous enzyme catalysing the reversible hydration of CO(2) to bicarbonate, a reaction that supports various biochemical and physiological functions. Genome analysis of Azospirillum brasilense, a nonphotosynthetic, nitrogen-fixing, rhizobacterium, revealed an ORF with homology to beta-class carbonic anhydrases (CAs). Biochemical characteristics of the beta-class CA of A. brasilense, analysed after cloning the gene (designated as bca), overexpressing in Escherichia coli and purifying the protein by affinity purification, revealed that the native recombinant enzyme is a homotetramer, inhibited by the known CA inhibitors. CA activity in A. brasilense cell extracts, reverse transcriptase (RT)-PCR and Western blot analyses showed that bca was constitutively expressed under aerobic conditions. Lower beta-galactosidase activity in A. brasilense cells harbouring bca promoter: lacZ fusion during the stationary phase or during growth on 3% CO(2) enriched air or at acidic pH indicated that the transcription of bca was downregulated by the stationary phase, elevated CO(2) levels and acidic pH conditions. These observations were also supported by RT-PCR analysis. Thus, beta-CA in A. brasilense seems to be required for scavenging CO(2) from the ambient air and the requirement of CO(2) hydration seems to be higher for the cultures growing exponentially at neutral to alkaline pH.

  10. The Changes of Energy Interactions between Nucleus Function and Mitochondria Functions Causing Transmutation of Chronic Inflammation into Cancer Metabolism.

    Science.gov (United States)

    Ponizovskiy, Michail R

    2016-01-01

    Interactions between nucleus and mitochondria functions induce the mechanism of maintenance stability of cellular internal energy according to the first law of thermodynamics in able-bodied cells and changes the mechanisms of maintenance stability of cellular internal energy creating a transition stationary state of ablebodied cells into quasi-stationary pathologic states of acute inflammation transiting then into chronic inflammation and then transmuting into cancer metabolism. The mechanisms' influences of intruding etiologic pathologic agents (microbe, virus, etc.) lead to these changes of energy interactions between nucleus and mitochondria functions causing general acute inflammation, then passing into local chronic inflammation, and reversing into cancer metabolism transmutation. Interactions between biochemical processes and biophysical processes of cellular capacitors' operations create a supplementary mechanism of maintenance stability of cellular internal energy in the norm and in pathology. Discussion of some scientific works eliminates doubts of the authors of these works.

  11. Stationary super-capacitor energy storage system to save regenerative braking energy in a metro line

    International Nuclear Information System (INIS)

    Teymourfar, Reza; Asaei, Behzad; Iman-Eini, Hossein; Nejati fard, Razieh

    2012-01-01

    Highlights: ► Super-capacitors are used to store regenerative braking energy in a metro network. ► A novel approach is proposed to model easily and accurately the metro network. ► An efficient approach is proposed to calculate the required super-capacitors. ► Maximum energy saving is around 44% at off-peak period and 42% at peak period. ► Benefit/cost analyses are performed for the suggested ESS. - Abstract: In this paper, the stationary super-capacitors are used to store a metro network regenerative braking energy. In order to estimate the required energy storage systems (ESSs), line 3 of Tehran metro network is modeled through a novel approach, in peak and off-peak conditions based on the real data obtained from Tehran metro office. A useful method is proposed to predict the maximum instantaneous regenerative energy which is delivered to each station before applying ESS and based on that the ESS configuration for each station is determined. Finally, the effectiveness of the proposed ESS is confirmed by economic evaluations and benefit/cost analyses on line 3 of Tehran metro network.

  12. Mean field interaction in biochemical reaction networks

    KAUST Repository

    Tembine, Hamidou

    2011-09-01

    In this paper we establish a relationship between chemical dynamics and mean field game dynamics. We show that chemical reaction networks can be studied using noisy mean field limits. We provide deterministic, noisy and switching mean field limits and illustrate them with numerical examples. © 2011 IEEE.

  13. Central Limit Theorem for Exponentially Quasi-local Statistics of Spin Models on Cayley Graphs

    Science.gov (United States)

    Reddy, Tulasi Ram; Vadlamani, Sreekar; Yogeshwaran, D.

    2018-04-01

    Central limit theorems for linear statistics of lattice random fields (including spin models) are usually proven under suitable mixing conditions or quasi-associativity. Many interesting examples of spin models do not satisfy mixing conditions, and on the other hand, it does not seem easy to show central limit theorem for local statistics via quasi-associativity. In this work, we prove general central limit theorems for local statistics and exponentially quasi-local statistics of spin models on discrete Cayley graphs with polynomial growth. Further, we supplement these results by proving similar central limit theorems for random fields on discrete Cayley graphs taking values in a countable space, but under the stronger assumptions of α -mixing (for local statistics) and exponential α -mixing (for exponentially quasi-local statistics). All our central limit theorems assume a suitable variance lower bound like many others in the literature. We illustrate our general central limit theorem with specific examples of lattice spin models and statistics arising in computational topology, statistical physics and random networks. Examples of clustering spin models include quasi-associated spin models with fast decaying covariances like the off-critical Ising model, level sets of Gaussian random fields with fast decaying covariances like the massive Gaussian free field and determinantal point processes with fast decaying kernels. Examples of local statistics include intrinsic volumes, face counts, component counts of random cubical complexes while exponentially quasi-local statistics include nearest neighbour distances in spin models and Betti numbers of sub-critical random cubical complexes.

  14. Shape-Shifting Droplet Networks.

    Science.gov (United States)

    Zhang, T; Wan, Duanduan; Schwarz, J M; Bowick, M J

    2016-03-11

    We consider a three-dimensional network of aqueous droplets joined by single lipid bilayers to form a cohesive, tissuelike material. The droplets in these networks can be programed to have distinct osmolarities so that osmotic gradients generate internal stresses via local fluid flows to cause the network to change shape. We discover, using molecular dynamics simulations, a reversible folding-unfolding process by adding an osmotic interaction with the surrounding environment which necessarily evolves dynamically as the shape of the network changes. This discovery is the next important step towards osmotic robotics in this system. We also explore analytically and numerically how the networks become faceted via buckling and how quasi-one-dimensional networks become three dimensional.

  15. Quasi interpolation with Voronoi splines.

    Science.gov (United States)

    Mirzargar, Mahsa; Entezari, Alireza

    2011-12-01

    We present a quasi interpolation framework that attains the optimal approximation-order of Voronoi splines for reconstruction of volumetric data sampled on general lattices. The quasi interpolation framework of Voronoi splines provides an unbiased reconstruction method across various lattices. Therefore this framework allows us to analyze and contrast the sampling-theoretic performance of general lattices, using signal reconstruction, in an unbiased manner. Our quasi interpolation methodology is implemented as an efficient FIR filter that can be applied online or as a preprocessing step. We present visual and numerical experiments that demonstrate the improved accuracy of reconstruction across lattices, using the quasi interpolation framework. © 2011 IEEE

  16. M-quasi-hyponormal composition operators

    Directory of Open Access Journals (Sweden)

    Pushpa R. Suri

    1987-01-01

    Full Text Available A necessary and sufficient condition is obtained for M-quasi-hyponormal composition operators. It has also been proved that the class of M-quasi-hyponormal composition operators coincides with the class of M-paranormal composition operators. Existence of M-hyponormal composition operators which are not hyponormal; and M-quasihyponormal composition operators which are not M-hyponormal and quasi-hyponormal are also shown.

  17. Cosmological red shift in the Seeliger-Einstein stationary Universe

    International Nuclear Information System (INIS)

    Kropotkin, P.N.

    1988-01-01

    A problem of Seeliger-Einstein stationary Universe is considered. Simple empirical relations between cosmological and physical constants to which attention was paid by Stanukovich K., Dikke R., Dirac P. testify to the supposition on stationary Universe. The Universe expansion being absent, a hypothesis of ''photon aging'' suggested in 1929 by Belopolskij A. and Zwicky F. must be accepted for explanation of Hubble effect. It is stated that abandon the Seeliger-Einstein stationary cosmological model would be premature. Study and comparison of different mechanisms suggested for validation of photon aging hypothesis is necessary

  18. Stationary states of two-level open quantum systems

    International Nuclear Information System (INIS)

    Gardas, Bartlomiej; Puchala, Zbigniew

    2011-01-01

    A problem of finding stationary states of open quantum systems is addressed. We focus our attention on a generic type of open system: a qubit coupled to its environment. We apply the theory of block operator matrices and find stationary states of two-level open quantum systems under certain conditions applied on both the qubit and the surrounding.

  19. Modeling stationary and moving pebbles in a pebble bed reactor

    International Nuclear Information System (INIS)

    Zhao, Xiang; Montgomery, Trent; Zhang, Sijun

    2015-01-01

    Highlights: • The stationary and moving pebbles in a PBR are numerically studied by DEM. • The packing structure of stationary pebbles is simulated by a filling process. • The packing structural properties are obtained and analyzed. • The dynamic behavior of pebbles is predicted and discussed. - Abstract: This paper presents a numerical study of the stationary and moving pebbles in a pebble bed reactor (PBR) by means of discrete element method (DEM). The packing structure of stationary pebbles is simulated by a filling process that terminates with the settling of the pebbles into a PBR. The packing structural properties are obtained and analyzed. Subsequently, when the outlet of the PBR is opened during the operation of the PBR, the stationary pebbles start to flow downward and are removed at the bottom of the PBR. The dynamic behavior of pebbles is predicted and discussed. Our results indicate the DEM can offer both macroscopic and microscopic information for PBR design calculations and safety assessment

  20. Metastability of Queuing Networks with Mobile Servers

    Science.gov (United States)

    Baccelli, F.; Rybko, A.; Shlosman, S.; Vladimirov, A.

    2018-04-01

    We study symmetric queuing networks with moving servers and FIFO service discipline. The mean-field limit dynamics demonstrates unexpected behavior which we attribute to the metastability phenomenon. Large enough finite symmetric networks on regular graphs are proved to be transient for arbitrarily small inflow rates. However, the limiting non-linear Markov process possesses at least two stationary solutions. The proof of transience is based on martingale techniques.

  1. Stationary metrics and optical Zermelo-Randers-Finsler geometry

    International Nuclear Information System (INIS)

    Gibbons, G. W.; Warnick, C. M.; Herdeiro, C. A. R.; Werner, M. C.

    2009-01-01

    We consider a triality between the Zermelo navigation problem, the geodesic flow on a Finslerian geometry of Randers type, and spacetimes in one dimension higher admitting a timelike conformal Killing vector field. From the latter viewpoint, the data of the Zermelo problem are encoded in a (conformally) Painleve-Gullstrand form of the spacetime metric, whereas the data of the Randers problem are encoded in a stationary generalization of the usual optical metric. We discuss how the spacetime viewpoint gives a simple and physical perspective on various issues, including how Finsler geometries with constant flag curvature always map to conformally flat spacetimes and that the Finsler condition maps to either a causality condition or it breaks down at an ergo surface in the spacetime picture. The gauge equivalence in this network of relations is considered as well as the connection to analogue models and the viewpoint of magnetic flows. We provide a variety of examples.

  2. Towards Gravitating Discs around Stationary Black Holes

    Science.gov (United States)

    Semerák, Oldřich

    This article outlines the search for an exact general relativistic description of the exterior(vacuum) gravitational field of a rotating spheroidal black hole surrounded by a realistic axially symmetric disc of matter. The problem of multi-body stationary spacetimes is first exposed from the perspective of the relativity theory (section 1) and astrophysics (section 2), listing the basic methods employed and results obtained. Then (in section 3) basic formulas for stationary axisymmetric solutions are summarized. Sections 4 and 5 review what we have learnt with Miroslav Žáček and Tomáš Zellerin about certain static and stationary situations recently. Concluding remarks are given in section 6. Although the survey part is quite general, the list of references cannot be complete.Our main desideratum was the informative value rather than originality — novelties have been preferred, mainly reviews and those with detailed introductions.

  3. Quantum manipulation of two-color stationary light: Quantum wavelength conversion

    International Nuclear Information System (INIS)

    Moiseev, S. A.; Ham, B. S.

    2006-01-01

    We present a quantum manipulation of a traveling light pulse using electromagnetically induced transparency-based slow light phenomenon for the generation of two-color stationary light. We theoretically discuss the two-color stationary light for the quantum wavelength conversion process in terms of pulse area, energy transfer, and propagation directions. The condition of the two-color stationary light pulse generation has been found and the quantum light dynamics has been studied analytically in the adiabatic limit. The quantum frequency conversion rate of the traveling light is dependent on the spatial spreading of the two-color stationary light pulse and can be near unity in an optically dense medium for the optimal frequencies of the control laser fields

  4. Deviations from the O3-NO-NO2 photo-stationary state in Delhi, India

    Science.gov (United States)

    Chate, Dilip M.; Ghude, Sachin D.; Beig, Gurfan; Mahajan, Anoop S.; Jena, Chinmay; Srinivas, Reka; Dahiya, Anita; Kumar, Nandini

    2014-10-01

    A network of air quality and weather monitoring stations was set-up across Delhi, India, under the System of Air quality Forecasting And Research (SAFAR) project. The objective of this network was to enable better understanding of air quality in terms of atmospheric chemistry, emissions and forecasting in Delhi, one of the largest metropolises in the world. In this study, we focus on the O3-NO-NO2-triad Photo Stationary State (PSS), and investigate site-specific deviations in the Leighton Ratio (Φ) during a short period in 2012 (1-31 December). Large variations were observed in the NO ( 1) were also observed occasionally, and these data were used to estimate the total peroxy radical (PO2) mixing ratios. This is the first estimate of PO2 reported for the city of Delhi and compares well with the results in the literature.

  5. Interactions of district electricity and heating systems considering time-scale characteristics based on quasi-steady multi-energy flow

    International Nuclear Information System (INIS)

    Pan, Zhaoguang; Guo, Qinglai; Sun, Hongbin

    2016-01-01

    Highlights: • Interaction mechanisms of district electricity and heating systems are analyzed. • The interaction process is divided into four quasi-steady stages. • A quasi-steady multi-energy flow model is proposed and calculated. • A heating network node type transformation technique is developed. • Attention should be paid on the fast hydraulic process and slow thermal process. - Abstract: Integrated energy systems (IESs) are under development for a variety of benefits. District electricity and heating systems (DEHSs) deliver electricity and heat, the most common energy demands, to end-users. This paper studies the interactions in a DEHS considering the time-scale characteristics. Interaction mechanisms of a DEHS are analyzed. A disturbance in one system influences another system through coupling components, depending on the disturbance, operating characteristics, and control strategies. A model of the main components in DEHSs is presented. The time scale characteristics are studied based on a dynamic comparison of the different components. Then the interaction process is divided into four stages; each is a quasi-steady state. A quasi-steady multi-energy flow model is proposed and calculated, with a heating network node type transformation technique developed. A case study with detailed results and discussion of 3 types of disturbance is presented to verify the methods. The results present the interactions between the electricity and the system. It is suggested that attention should be paid both on the fast hydraulic process and slow thermal process for system security and economic operation.

  6. On some classes of super quasi-Einstein manifolds

    International Nuclear Information System (INIS)

    Ozguer, Cihan

    2009-01-01

    Quasi-Einstein and generalized quasi-Einstein manifolds are the generalizations of Einstein manifolds. In this study, we consider a super quasi-Einstein manifold, which is another generalization of an Einstein manifold. We find the curvature characterizations of a Ricci-pseudosymmetric and a quasi-conformally flat super quasi-Einstein manifolds. We also consider the condition C ∼ .S=0 on a super quasi-Einstein manifold, where C ∼ and S denote the quasi-conformal curvature tensor and Ricci tensor of the manifold, respectively.

  7. A Novel T-Fed 4-Element Quasi-Lumped Resonator Antenna Array

    Directory of Open Access Journals (Sweden)

    S.S. Olokede

    2014-06-01

    Full Text Available In this paper, electrically small corporately T-fed quasi-lumped element resonator antenna array is investigated. The radiating element, a quasi-lumped element resonator is excited by a novel semi hybrid ring-like T-shaped corporate feed network. The characteristics losses due to Ohmic and discontinuities along the feed line which invariably constitutes complex feed structures are mitigated at the instance of the proposed antenna. Technique to implement the compact array with the intent to enhance the gain is presented. The operation dynamics of the feed along with its theoretical explanation is also reported. Findings indicates that the measured gain is 10.97 dBi for antenna of an estate area of about 0.677λ_0 × 1.257λ_0 sq. mm. Valuable insight to the optimum design in terms of compactness, good gain, and ease of fabrication is documented.

  8. Representation of neural networks as Lotka-Volterra systems

    International Nuclear Information System (INIS)

    Moreau, Yves; Vandewalle, Joos; Louies, Stephane; Brenig, Leon

    1999-01-01

    We study changes of coordinates that allow the representation of the ordinary differential equations describing continuous-time recurrent neural networks into differential equations describing predator-prey models--also called Lotka-Volterra systems. We transform the equations for the neural network first into quasi-monomial form, where we express the vector field of the dynamical system as a linear combination of products of powers of the variables. In practice, this transformation is possible only if the activation function is the hyperbolic tangent or the logistic sigmoied. From this quasi-monomial form, we can directly transform the system further into Lotka-Volterra equations. The resulting Lotka-Volterra system is of higher dimension than the original system, but the behavior of its first variables is equivalent to the behavior of the original neural network

  9. An economic model of friendship and enmity for measuring social balance in networks

    Science.gov (United States)

    Lee, Kyu-Min; Shin, Euncheol; You, Seungil

    2017-12-01

    We propose a dynamic economic model of networks where agents can be friends or enemies with one another. This is a decentralized relationship model in that agents decide whether to change their relationships so as to minimize their imbalanced triads. In this model, there is a single parameter, which we call social temperature, that captures the degree to which agents care about social balance in their relationships. We show that the global structure of relationship configuration converges to a unique stationary distribution. Using this stationary distribution, we characterize the maximum likelihood estimator of the social temperature parameter. Since the estimator is computationally challenging to calculate from real social network datasets, we provide a simple simulation algorithm and verify its performance with real social network datasets.

  10. Generation of intervention strategy for a genetic regulatory network represented by a family of Markov Chains.

    Science.gov (United States)

    Berlow, Noah; Pal, Ranadip

    2011-01-01

    Genetic Regulatory Networks (GRNs) are frequently modeled as Markov Chains providing the transition probabilities of moving from one state of the network to another. The inverse problem of inference of the Markov Chain from noisy and limited experimental data is an ill posed problem and often generates multiple model possibilities instead of a unique one. In this article, we address the issue of intervention in a genetic regulatory network represented by a family of Markov Chains. The purpose of intervention is to alter the steady state probability distribution of the GRN as the steady states are considered to be representative of the phenotypes. We consider robust stationary control policies with best expected behavior. The extreme computational complexity involved in search of robust stationary control policies is mitigated by using a sequential approach to control policy generation and utilizing computationally efficient techniques for updating the stationary probability distribution of a Markov chain following a rank one perturbation.

  11. South Pacific quasi-stationary waves and anomalously cold summers in the northernmost Antarctic Peninsula Ondas cuasi-estacionarias en el Pacífico sur y veranos fríos anómalos en el extremo norte de la Península Antártica

    Directory of Open Access Journals (Sweden)

    Alfredo J Costa

    2012-12-01

    Full Text Available The present work aims to analyze the tropospheric circulation in the Southern Hemisphere (SH associated with anomalously cold summers (ACS, Dec-Feb in the period 1981-2010 over northernmost Antarctic Peninsula (AP. A quartile criterion is used to identify ACSs, and a wave-activity flux for stationary quasi-geostrophic (QG eddies on a zonally varying basic flow is used as a diagnostic tool to study wave-train propagation from the Pacific Ocean. It is shown that the summer of 2010 was singularly cold, so this summer is studied separately from the ACS composites previous to 2010. The ACSs prior to 2010 are characterized by a Pacific-South American (PSA-like quasi-stationary wave (QSW train that extends barotropically through the troposphere up to the lower stratosphere. It is emanated from a region of anomalous convection in New Zealand and it is directed towards the South Pacific. The wave train leads to an anomalous stationary cyclone that is located to the northwest of the AP. The easterly wind anomalies induced by this local anomalous stationary cyclone together with higher cloudiness anomalies are found to be associated with ACS events over the northern AP. The 2010 cold summer not only shows an anomalous stationary cyclone to the northwest of the AP, but singularly also shows a mid-latitude anomalous anticyclone over the south-eastern South Pacific. From there, a shorter QSW regionally propagates towards southern South America. In this case there is no PSA-like wave structure crossing the South Pacific. The short regional QSW seems to emanate from a region of positive sea surface temperature (SST anomalies in the middle of the southern South Pacific. The SST anomalies can be related to the generation of locally increased mean-flow baroclinicity. Hence, this QSW propagation is related to anomalous transient activity. In turn, these SST anomalies could be induced by a PSA-like QSW propagation during the previous spring (Sep-Nov of 2009.El

  12. Stationary black holes: large D analysis

    International Nuclear Information System (INIS)

    Suzuki, Ryotaku; Tanabe, Kentaro

    2015-01-01

    We consider the effective theory of large D stationary black holes. By solving the Einstein equations with a cosmological constant using the 1/D expansion in near zone of the black hole we obtain the effective equation for the stationary black hole. The effective equation describes the Myers-Perry black hole, bumpy black holes and, possibly, the black ring solution as its solutions. In this effective theory the black hole is represented as an embedded membrane in the background, e.g., Minkowski or Anti-de Sitter spacetime and its mean curvature is given by the surface gravity redshifted by the background gravitational field and the local Lorentz boost. The local Lorentz boost property of the effective equation is observed also in the metric itself. In fact we show that the leading order metric of the Einstein equation in the 1/D expansion is generically regarded as a Lorentz boosted Schwarzschild black hole. We apply this Lorentz boost property of the stationary black hole solution to solve perturbation equations. As a result we obtain an analytic formula for quasinormal modes of the singly rotating Myers-Perry black hole in the 1/D expansion.

  13. The Stationary SQUID

    Science.gov (United States)

    Berger, Jorge

    2018-06-01

    In the customary mode of operation of a SQUID, the electromagnetic field in the SQUID is an oscillatory function of time. In this situation, electromagnetic radiation is emitted and couples to the sample. This is a back action that can alter the state that we intend to measure. A circuit that could perform as a stationary SQUID consists of a loop of superconducting material that encloses the magnetic flux, connected to a superconducting and to a normal electrode. This circuit does not contain Josephson junctions, or any other miniature feature. We study the evolution of the order parameter and of the electrochemical potential in this circuit; they converge to a stationary regime, and the voltage between the electrodes depends on the enclosed flux. We obtain expressions for the power dissipation and for the heat transported by the electric current; the validity of these expressions does not rely on a particular evolution model for the order parameter. We evaluate the influence of fluctuations. For a SQUID perimeter of the order of 1μ m and temperature 0.9T_c, we obtain a flux resolution of the order of 10^{-5}Φ _0/Hz^{1/2}; the resolution is expected to improve as the temperature is lowered.

  14. Investigation of the stationary-thermonuclear-reaction realization possibility in a tokamak device

    International Nuclear Information System (INIS)

    Kolesnichenko, Ya.I.; Reznik, S.N.; Fursa, A.D.

    1976-01-01

    The stationary (quasistationary) selfsustaining thermonuclear D-T reaction is shown to be possible in a toroidal device such as 'Tokamak' with large enough plasma radius. The stationary temperature of the plasma can be quite high. Thus when the transport processes are assumed to be neoclassical the temperature of the central part of a plasma colomn of radius approximately 10-200 cm in the stationary state is 70 keV.The stationary temperature distribution is reached spontaneously as a result of the thermal instability development if plasma is preheated to 10 keV. The stationary thermonuclear burning is also possible at lower temperatures if plasma energy balance is controlled

  15. Sensitivity analysis explains quasi-one-dimensional current transport in two-dimensional materials

    DEFF Research Database (Denmark)

    Boll, Mads; Lotz, Mikkel Rønne; Hansen, Ole

    2014-01-01

    We demonstrate that the quasi-one-dimensional (1D) current transport, experimentally observed in graphene as measured by a collinear four-point probe in two electrode configurations A and B, can be interpreted using the sensitivity functions of the two electrode configurations (configurations...... A and B represents different pairs of electrodes chosen for current sources and potential measurements). The measured sheet resistance in a four-point probe measurement is averaged over an area determined by the sensitivity function. For a two-dimensional conductor, the sensitivity functions for electrode...... configurations A and B are different. But when the current is forced to flow through a percolation network, e.g., graphene with high density of extended defects, the two sensitivity functions become identical. This is equivalent to a four-point measurement on a line resistor, hence quasi-1D transport...

  16. Parallel replica dynamics method for bistable stochastic reaction networks: Simulation and sensitivity analysis

    Science.gov (United States)

    Wang, Ting; Plecháč, Petr

    2017-12-01

    Stochastic reaction networks that exhibit bistable behavior are common in systems biology, materials science, and catalysis. Sampling of stationary distributions is crucial for understanding and characterizing the long-time dynamics of bistable stochastic dynamical systems. However, simulations are often hindered by the insufficient sampling of rare transitions between the two metastable regions. In this paper, we apply the parallel replica method for a continuous time Markov chain in order to improve sampling of the stationary distribution in bistable stochastic reaction networks. The proposed method uses parallel computing to accelerate the sampling of rare transitions. Furthermore, it can be combined with the path-space information bounds for parametric sensitivity analysis. With the proposed methodology, we study three bistable biological networks: the Schlögl model, the genetic switch network, and the enzymatic futile cycle network. We demonstrate the algorithmic speedup achieved in these numerical benchmarks. More significant acceleration is expected when multi-core or graphics processing unit computer architectures and programming tools such as CUDA are employed.

  17. Parallel replica dynamics method for bistable stochastic reaction networks: Simulation and sensitivity analysis.

    Science.gov (United States)

    Wang, Ting; Plecháč, Petr

    2017-12-21

    Stochastic reaction networks that exhibit bistable behavior are common in systems biology, materials science, and catalysis. Sampling of stationary distributions is crucial for understanding and characterizing the long-time dynamics of bistable stochastic dynamical systems. However, simulations are often hindered by the insufficient sampling of rare transitions between the two metastable regions. In this paper, we apply the parallel replica method for a continuous time Markov chain in order to improve sampling of the stationary distribution in bistable stochastic reaction networks. The proposed method uses parallel computing to accelerate the sampling of rare transitions. Furthermore, it can be combined with the path-space information bounds for parametric sensitivity analysis. With the proposed methodology, we study three bistable biological networks: the Schlögl model, the genetic switch network, and the enzymatic futile cycle network. We demonstrate the algorithmic speedup achieved in these numerical benchmarks. More significant acceleration is expected when multi-core or graphics processing unit computer architectures and programming tools such as CUDA are employed.

  18. Analysis of stress and deformation in non-stationary creep

    International Nuclear Information System (INIS)

    Feijoo, R.A.; Taroco, E.; Guerreiro, J.N.C.

    1980-12-01

    A variational method and its algorithm are presented; they permit the analysis of stress and deformation in non-stationary creep. This algorithm is applied to an infinite cylinder submitted to an internal pressure. The solution obtained is compared with the solution of non-stationary creep problems [pt

  19. Autonomous bio-chemical decontaminator (ABCD) against weapons of mass destruction

    Science.gov (United States)

    Hyacinthe, Berg P.

    2006-05-01

    The proliferation of weapons of mass destruction (WMD) and the use of such elements pose an eminent asymmetric threat with disastrous consequences to the national security of any nation. In particular, the use of biochemical warfare agents against civilians and unprotected troops in international conflicts or by terrorists against civilians is considered as a very peculiar threat. Accordingly, taking a quarantine-before-inhalation approach to biochemical warfare, the author introduces the notion of autonomous biochemical decontamination against WMD. In the unfortunate event of a biochemical attack, the apparatus proposed herein is intended to automatically detect, identify, and more importantly neutralize a biochemical threat. Along with warnings concerning a cyber-WMD nexus, various sections cover discussions on human senses and computer sensors, corroborating evidence related to detection and neutralization of chemical toxins, and cyber-assisted olfaction in stand alone, peer-to-peer, and network settings. In essence, the apparatus can be used in aviation and mass transit security to initiate mass decontamination by dispersing a decontaminant aerosol or to protect the public water supply against a potential bioterrorist attack. Future effort may involve a system-on-chip (SoC) embodiment of this apparatus that allows a safer environment for the emerging phenomenon of cyber-assisted olfaction and morph cell phones into ubiquitous sensors/decontaminators. Although this paper covers mechanisms and protocols to avail a neutralizing substance, further research will need to explore the substance's various pharmacological profiles and potential side effects.

  20. Stability of Bifurcating Stationary Solutions of the Artificial Compressible System

    Science.gov (United States)

    Teramoto, Yuka

    2018-02-01

    The artificial compressible system gives a compressible approximation of the incompressible Navier-Stokes system. The latter system is obtained from the former one in the zero limit of the artificial Mach number ɛ which is a singular limit. The sets of stationary solutions of both systems coincide with each other. It is known that if a stationary solution of the incompressible system is asymptotically stable and the velocity field of the stationary solution satisfies an energy-type stability criterion, then it is also stable as a solution of the artificial compressible one for sufficiently small ɛ . In general, the range of ɛ shrinks when the spectrum of the linearized operator for the incompressible system approaches to the imaginary axis. This can happen when a stationary bifurcation occurs. It is proved that when a stationary bifurcation from a simple eigenvalue occurs, the range of ɛ can be taken uniformly near the bifurcation point to conclude the stability of the bifurcating solution as a solution of the artificial compressible system.

  1. Enhancing (In)Formal Learning Ties in Interdisciplinary Management Courses: A Quasi-Experimental Social Network Study

    Science.gov (United States)

    Rienties, Bart; Héliot, YingFei

    2018-01-01

    While interdisciplinary courses are regarded as a promising method for students to learn and apply knowledge from other disciplines, there is limited empirical evidence available whether interdisciplinary courses can effectively "create" interdisciplinary students. In this innovative quasi-experimental study amongst 377 Master's…

  2. A constructive logic for services and information flow in computer networks

    NARCIS (Netherlands)

    Borghuis, V.A.J.; Feijs, L.M.G.

    2000-01-01

    In this paper we introduce a typed -calculus in which computer networks can be formalized and directed at situations where the services available on the network are stationary, while the information can flow freely. For this calculus, an analogue of the ‘propositions-as-types ’interpretation of

  3. An assessment on the use of stationary vehicles to support cooperative positioning systems

    Science.gov (United States)

    Ordóñez-Hurtado, Rodrigo H.; Crisostomi, Emanuele; Shorten, Robert N.

    2018-03-01

    In this paper, we evaluate the ability of stationary vehicles (e.g. parked or temporary stopped cars) as tools to enhance the capabilities of existing cooperative positioning algorithms in vehicular networks. First, some real-world facts are provided to support the feasibility of our ideas. Then, we examine the idea in greater details in terms of the technical requirements and methodological analysis, and provide a comprehensive experimental evaluation using dedicated simulations. The routing of a drone through an urban scenario is presented as a non-traditional application case, where the benefits of the proposed approach are reflected in a better utilisation of the flight time.

  4. Measurement and quasi-states in quantum mechanics

    International Nuclear Information System (INIS)

    Harper, C.D.

    1987-01-01

    Part of the task of quantum logic is to account for the collapse of the state vector during measurement. A difficulty in this is that it is not obvious how to describe measurement quantum mechanically as the interaction of two or more systems; interacting quantum-mechanical systems do not possess states, so their states cannot collapse. This dissertation shows that component systems of a composite system possess families of state-like vectors. These are the quasi-projections of the state vector of the composite system, each associated with a family of commutable observables. Often these quasi-projections cluster so closely around a quasi-state that they are practically indistinguishable from it. A description of measurement based on quasi-projections reveals the apparent collapse of the state vector during measurement to be illusory. The continuous evolution of the state of the composite system give rise to abrupt changes in the quasi-projections which make it appear that the state has changed. The quasi-projections cease to cluster near one quasi-state, are momentarily scattered, and then cluster again near another quasi-state. The concept of quasi-projection is also used to generalize the quantum logic of Birkhoff and von Neumann in such a fashion that a proposition can always be assigned a truth value

  5. Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.

    Science.gov (United States)

    Ullah, M; Schmidt, H; Cho, K H; Wolkenhauer, O

    2006-03-01

    The analysis of complex biochemical networks is conducted in two popular conceptual frameworks for modelling. The deterministic approach requires the solution of ordinary differential equations (ODEs, reaction rate equations) with concentrations as continuous state variables. The stochastic approach involves the simulation of differential-difference equations (chemical master equations, CMEs) with probabilities as variables. This is to generate counts of molecules for chemical species as realisations of random variables drawn from the probability distribution described by the CMEs. Although there are numerous tools available, many of them free, the modelling and simulation environment MATLAB is widely used in the physical and engineering sciences. We describe a collection of MATLAB functions to construct and solve ODEs for deterministic simulation and to implement realisations of CMEs for stochastic simulation using advanced MATLAB coding (Release 14). The program was successfully applied to pathway models from the literature for both cases. The results were compared to implementations using alternative tools for dynamic modelling and simulation of biochemical networks. The aim is to provide a concise set of MATLAB functions that encourage the experimentation with systems biology models. All the script files are available from www.sbi.uni-rostock.de/ publications_matlab-paper.html.

  6. Non-Stationary Internal Tides Observed with Satellite Altimetry

    Science.gov (United States)

    Ray, Richard D.; Zaron, E. D.

    2011-01-01

    Temporal variability of the internal tide is inferred from a 17-year combined record of Topex/Poseidon and Jason satellite altimeters. A global sampling of along-track sea-surface height wavenumber spectra finds that non-stationary variance is generally 25% or less of the average variance at wavenumbers characteristic of mode-l tidal internal waves. With some exceptions the non-stationary variance does not exceed 0.25 sq cm. The mode-2 signal, where detectable, contains a larger fraction of non-stationary variance, typically 50% or more. Temporal subsetting of the data reveals interannual variability barely significant compared with tidal estimation error from 3-year records. Comparison of summer vs. winter conditions shows only one region of noteworthy seasonal changes, the northern South China Sea. Implications for the anticipated SWOT altimeter mission are briefly discussed.

  7. Quasi-optical millimeter wave rotating TE62 mode generator

    International Nuclear Information System (INIS)

    Li Shaopu; Zhang Conghui; Wang Zhong; Guo Feng; Chen Hongbin; Hu Linlin; Pan Wenwu

    2011-01-01

    The design,measurement technique and experimental results of rotating TE 6 2 mode generator are presented. The source includes millimeter wave optical system and open coaxial wave guide system. The millimeter wave optical system consists of pyramid antenna, hyperbolical reflector, parabolic reflector and quasi parabolic reflector. The open coaxial wave guide system contains open coaxial wave guide cavity, cylinder wave guide and output antenna. It is tested by network analyser and millimeter wave near field pattern auto-test system, and the purity of rotating TE 6 2 mode at 96.4 GHz is about 97%. (authors)

  8. A multiple system governed by a quasi-birth-and-death process

    International Nuclear Information System (INIS)

    Perez-Ocon, Rafael; Montoro-Cazorla, Delia

    2004-01-01

    The system we consider comprises n units, of which one has to operate for the system to work. The other units are in repair, in cold standby, or waiting for repair. Only the working unit can fail. The operational and repair times follow phase-type distributions. Upon failure, it is replaced by a standby unit and goes to the repair facility. There is only one repairman. When one unit operates the system is up and when all the units are in repair or waiting for repair, the system is down. This system is governed by a finite quasi-birth-and-death process. The stationary probability vector and useful performance measures in reliability, such as the availability and the rate of occurrence of failures are explicitly calculated. This model extends other previously considered in the literature. The case with an infinite number of units in cold standby is also studied. Computational implementation of the results is performed via a numerical example, and the different systems considered are compared from the reliability measures determined

  9. Weak completeness of the Bourbaki quasi-uniformity

    Directory of Open Access Journals (Sweden)

    M.A. Sánchez Granero

    2001-04-01

    Full Text Available The concept of semicompleteness (weaker than half-completeness is defined for the Bourbaki quasi-uniformity of the hyperspace of a quasi-uniform space. It is proved that the Bourbaki quasi-uniformity is semicomplete in the space of nonempty sets of a quasi-uniform space (X,U if and only if each stable filter on (X,U* has a cluster point in (X,U. As a consequence the space of nonempty sets of a quasi-pseudometric space is semicomplete if and only if the space itself is half-complete. It is also given a characterization of semicompleteness of the space of nonempty U*-compact sets of a quasi-uniform space (X,U which extends the well known Zenor-Morita theorem.

  10. The New Generation Russian VLBI Network

    Science.gov (United States)

    Finkelstein, Andrey; Ipatov, Alexander; Smolentsev, Sergey; Mardyshkin, Vyacheslav; Fedotov, Leonid; Surkis, Igor; Ivanov, Dmitrij; Gayazov, Iskander

    2010-01-01

    This paper deals with a new project of the Russian VLBI Network dedicated for Universal Time determinations in quasi on-line mode. The basic principles of the network design and location of antennas are explained. Variants of constructing receiving devices, digital data acquisition system, and phase calibration system are specially considered. The frequency ranges and expected values of noise temperature are given.

  11. Large-Deviation Results for Discriminant Statistics of Gaussian Locally Stationary Processes

    Directory of Open Access Journals (Sweden)

    Junichi Hirukawa

    2012-01-01

    Full Text Available This paper discusses the large-deviation principle of discriminant statistics for Gaussian locally stationary processes. First, large-deviation theorems for quadratic forms and the log-likelihood ratio for a Gaussian locally stationary process with a mean function are proved. Their asymptotics are described by the large deviation rate functions. Second, we consider the situations where processes are misspecified to be stationary. In these misspecified cases, we formally make the log-likelihood ratio discriminant statistics and derive the large deviation theorems of them. Since they are complicated, they are evaluated and illustrated by numerical examples. We realize the misspecification of the process to be stationary seriously affecting our discrimination.

  12. Neuropsychological benefits of stationary bike exercise and a cybercycle exergame for older adults with diabetes: an exploratory analysis.

    Science.gov (United States)

    Anderson-Hanley, Cay; Arciero, Paul J; Westen, Sarah C; Nimon, Joseph; Zimmerman, Earl

    2012-07-01

    This quasi-experimental exploratory study investigated neuropsychological effects of exercise among older adults with diabetes mellitus (DM) compared with adults without diabetes (non-DM), and it examined the feasibility of using a stationary bike exergame as a form of exercise for older adults with and without diabetes. It is a secondary analysis that uses a small dataset from a larger randomized clinical trial (RCT) called the Cybercycle Study, which compared cognitive and physiological effects of traditional stationary cycling versus cybercycling. In the RCT and the secondary analysis, older adults living in eight independent living retirement facilities in the state of New York were enrolled in the study and assigned to exercise five times per week for 45 min per session (two times per week was considered acceptable for retention in the study) by using a stationary bicycle over the course of 3 months. They were randomly assigned to use either a standard stationary bicycle or a "cybercycle" with a video screen that displayed virtual terrains, virtual tours, and racing games with virtual competitors. For this secondary analysis, participants in the RCT who had type 2 DM (n = 10) were compared with age-matched non-DM exercisers (n = 10). The relationship between exercise and executive function (i.e., Color Trials 2, Digit Span Backwards, and Stroop C tests) was examined for DM and non-DM patients. Older adults with and without diabetes were able to use cybercycles successfully and complete the study, so the feasibility of this form of exercise for this population was supported. However, in contrast with the larger RCT, this small subset did not demonstrate statistically significant differences in executive function between the participants who used cybercycles and those who used stationary bikes with no games or virtual content on a video screen. Therefore, the study combined the two groups and called them "exercisers" and compared cognitive outcomes for DM versus

  13. Stationary Double Layers in a Collisionless Magnetoplasma

    DEFF Research Database (Denmark)

    Noriyoshi, Sato; Mieno, Tetsu; Hatakeyama, Rikizo

    1983-01-01

    of the plate on the low-potential side, being accompanied with current limitation. This localized potential drop moves along the plasma column, but finally stops and results in the formation of the stationary double layer in the presence of sufficient plasma supply from the plate on the high-potential side.......Stationary double layers are generated in a magnetoplasma by applying potential differences between two heated plates on which the plasma is produced by surface ionization. By measuring the double-layer formation process, a localized potential drop is found to be formed initially in front...

  14. Relativistic elasticity of stationary fluid branes

    Science.gov (United States)

    Armas, Jay; Obers, Niels A.

    2013-02-01

    Fluid mechanics can be formulated on dynamical surfaces of arbitrary codimension embedded in a background space-time. This has been the main object of study of the blackfold approach in which the emphasis has primarily been on stationary fluid configurations. Motivated by this approach we show under certain conditions that a given stationary fluid configuration living on a dynamical surface of vanishing thickness and satisfying locally the first law of thermodynamics will behave like an elastic brane when the surface is subject to small deformations. These results, which are independent of the number of space-time dimensions and of the fluid arising from a gravitational dual, reveal the (electro)elastic character of (charged) black branes when considering extrinsic perturbations.

  15. Application of quasi-random numbers for simulation

    International Nuclear Information System (INIS)

    Kazachenko, O.N.; Takhtamyshev, G.G.

    1985-01-01

    Application of the Monte-Carlo method for multidimensional integration is discussed. The main goal is to check the statement that the application of quasi-random numbers instead of regular pseudo-random numbers provides more rapid convergency. The Sobol, Richtmayer and Halton algorithms of quasi-random sequences are described. Over 50 tests to compare these quasi-random numbers as well as pseudo-random numbers were fulfilled. In all cases quasi-random numbers have clearly demonstrated a more rapid convergency as compared with pseudo-random ones. Positive test results on quasi-random trend in Monte-Carlo method seem very promising

  16. Ground-state populations of atomic hydrogen and hydrogen-like ions in nonthermal plasmas, and collisional-radiative recombination and ionization coefficients

    International Nuclear Information System (INIS)

    Drawin, H.W.; Emard, F.

    1978-01-01

    The populations of atomic hydrogen and hydrogen-like ions have been calculated using a collisional-radiative model. The global collisional-radiative excitation coefficients rsub(j)sup((0)) and rsub(j)sup((1)) valid for homogeneous-stationary and/or quasi-homogeneous quasi-stationary plasmas were published recently. The present paper contains in tabulated form the ground state populations and Saha decrements for the homogeneous stationary state, and the collisional-radiative recombination and ionization coefficients. (Auth.)

  17. Inference for local autocorrelations in locally stationary models.

    Science.gov (United States)

    Zhao, Zhibiao

    2015-04-01

    For non-stationary processes, the time-varying correlation structure provides useful insights into the underlying model dynamics. We study estimation and inferences for local autocorrelation process in locally stationary time series. Our constructed simultaneous confidence band can be used to address important hypothesis testing problems, such as whether the local autocorrelation process is indeed time-varying and whether the local autocorrelation is zero. In particular, our result provides an important generalization of the R function acf() to locally stationary Gaussian processes. Simulation studies and two empirical applications are developed. For the global temperature series, we find that the local autocorrelations are time-varying and have a "V" shape during 1910-1960. For the S&P 500 index, we conclude that the returns satisfy the efficient-market hypothesis whereas the magnitudes of returns show significant local autocorrelations.

  18. LEARNING ALGORITHM EFFECT ON MULTILAYER FEED FORWARD ARTIFICIAL NEURAL NETWORK PERFORMANCE IN IMAGE CODING

    Directory of Open Access Journals (Sweden)

    OMER MAHMOUD

    2007-08-01

    Full Text Available One of the essential factors that affect the performance of Artificial Neural Networks is the learning algorithm. The performance of Multilayer Feed Forward Artificial Neural Network performance in image compression using different learning algorithms is examined in this paper. Based on Gradient Descent, Conjugate Gradient, Quasi-Newton techniques three different error back propagation algorithms have been developed for use in training two types of neural networks, a single hidden layer network and three hidden layers network. The essence of this study is to investigate the most efficient and effective training methods for use in image compression and its subsequent applications. The obtained results show that the Quasi-Newton based algorithm has better performance as compared to the other two algorithms.

  19. A Generalized Framework for Non-Stationary Extreme Value Analysis

    Science.gov (United States)

    Ragno, E.; Cheng, L.; Sadegh, M.; AghaKouchak, A.

    2017-12-01

    Empirical trends in climate variables including precipitation, temperature, snow-water equivalent at regional to continental scales are evidence of changes in climate over time. The evolving climate conditions and human activity-related factors such as urbanization and population growth can exert further changes in weather and climate extremes. As a result, the scientific community faces an increasing demand for updated appraisal of the time-varying climate extremes. The purpose of this study is to offer a robust and flexible statistical tool for non-stationary extreme value analysis which can better characterize the severity and likelihood of extreme climatic variables. This is critical to ensure a more resilient environment in a changing climate. Following the positive feedback on the first version of Non-Stationary Extreme Value Analysis (NEVA) Toolbox by Cheng at al. 2014, we present an improved version, i.e. NEVA2.0. The upgraded version herein builds upon a newly-developed hybrid evolution Markov Chain Monte Carlo (MCMC) approach for numerical parameters estimation and uncertainty assessment. This addition leads to a more robust uncertainty estimates of return levels, return periods, and risks of climatic extremes under both stationary and non-stationary assumptions. Moreover, NEVA2.0 is flexible in incorporating any user-specified covariate other than the default time-covariate (e.g., CO2 emissions, large scale climatic oscillation patterns). The new feature will allow users to examine non-stationarity of extremes induced by physical conditions that underlie the extreme events (e.g. antecedent soil moisture deficit, large-scale climatic teleconnections, urbanization). In addition, the new version offers an option to generate stationary and/or non-stationary rainfall Intensity - Duration - Frequency (IDF) curves that are widely used for risk assessment and infrastructure design. Finally, a Graphical User Interface (GUI) of the package is provided, making NEVA

  20. Membrane oscillations in the channel of a stationary plasma motor

    International Nuclear Information System (INIS)

    Bugrova, A.I.; Lipatov, A.S.; Morozov, A.I.; Kharchevnikov, V.K.

    1999-01-01

    Results of measuring the ion flux density in the channel of the stationary plasma drive are presented. Two plane easters move both along and transverse to the plasma flux. During the experiment, the strong low-frequency oscillations (∼ 35 kHz) are observed in the channel of the stationary plasma drive. It is found that membrane oscillations are accompanied by oscillations of the electron temperature. These membrane oscillations affect the divergence of the output plasma jet and the erosion of the output part of the channel of the stationary plasma drive [ru

  1. The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase

    OpenAIRE

    Gagen, Emma J.; Yoshinaga, Marcos Y.; Garcia Prado, Franka; Hinrichs, Kai-Uwe; Thomm, Michael

    2016-01-01

    The majority of cells in nature probably exist in a stationary-phase-like state, due to nutrient limitation in most environments. Studies on bacteria and yeast reveal morphological and physiological changes throughout the stationary phase, which lead to an increased ability to survive prolonged nutrient limitation. However, there is little information on archaeal stationary phase responses. We investigated protein- and lipid-level changes in Thermococcus kodakarensis with extended time in the...

  2. Fast integration using quasi-random numbers

    International Nuclear Information System (INIS)

    Bossert, J.; Feindt, M.; Kerzel, U.

    2006-01-01

    Quasi-random numbers are specially constructed series of numbers optimised to evenly sample a given s-dimensional volume. Using quasi-random numbers in numerical integration converges faster with a higher accuracy compared to the case of pseudo-random numbers. The basic properties of quasi-random numbers are introduced, various generators are discussed and the achieved gain is illustrated by examples

  3. Fast integration using quasi-random numbers

    Science.gov (United States)

    Bossert, J.; Feindt, M.; Kerzel, U.

    2006-04-01

    Quasi-random numbers are specially constructed series of numbers optimised to evenly sample a given s-dimensional volume. Using quasi-random numbers in numerical integration converges faster with a higher accuracy compared to the case of pseudo-random numbers. The basic properties of quasi-random numbers are introduced, various generators are discussed and the achieved gain is illustrated by examples.

  4. Generating stationary entangled states in superconducting qubits

    International Nuclear Information System (INIS)

    Zhang Jing; Liu Yuxi; Li Chunwen; Tarn, T.-J.; Nori, Franco

    2009-01-01

    When a two-qubit system is initially maximally entangled, two independent decoherence channels, one per qubit, would greatly reduce the entanglement of the two-qubit system when it reaches its stationary state. We propose a method on how to minimize such a loss of entanglement in open quantum systems. We find that the quantum entanglement of general two-qubit systems with controllable parameters can be controlled by tuning both the single-qubit parameters and the two-qubit coupling strengths. Indeed, the maximum fidelity F max between the stationary entangled state, ρ ∞ , and the maximally entangled state, ρ m , can be about 2/3≅max(tr(ρ ∞ ρ m ))=F max , corresponding to a maximum stationary concurrence, C max , of about 1/3≅C(ρ ∞ )=C max . This is significant because the quantum entanglement of the two-qubit system can be produced and kept, even for a long time. We apply our proposal to several types of two-qubit superconducting circuits and show how the entanglement of these two-qubit circuits can be optimized by varying experimentally controllable parameters.

  5. Propagation of Boundary-Induced Discontinuity in Stationary Radiative Transfer

    Science.gov (United States)

    Kawagoe, Daisuke; Chen, I.-Kun

    2018-01-01

    We consider the boundary value problem of the stationary transport equation in the slab domain of general dimensions. In this paper, we discuss the relation between discontinuity of the incoming boundary data and that of the solution to the stationary transport equation. We introduce two conditions posed on the boundary data so that discontinuity of the boundary data propagates along positive characteristic lines as that of the solution to the stationary transport equation. Our analysis does not depend on the celebrated velocity averaging lemma, which is different from previous works. We also introduce an example in two dimensional case which shows that piecewise continuity of the boundary data is not a sufficient condition for the main result.

  6. Framework for Assessing Biogenic CO2 Emissions from Stationary Sources

    Science.gov (United States)

    This revision of the 2011 report, Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, evaluates biogenic CO2 emissions from stationary sources, including a detailed study of the scientific and technical issues associated with assessing biogenic carbon dioxide...

  7. Influence of stationary and non-stationary conditions on drying time and mechanical properties of a porcelain slab

    Science.gov (United States)

    Hammouda, Imen; Mihoubi, Daoued

    2017-12-01

    This work deals with a numerical study of the response of a porcelain slab when subjected to convective drying in stationary and non-stationary conditions. The used model describes heat, mass, and momentum transfers is applied to an unsaturated viscoelastic medium described by a Maxwell model. The numerical code allows us to determine the effect of the surrounding air temperature on drying kinetics and on mechanical stress intensities. Von Mises stresses are analysed in order to foresee an eventual damage that may occur during drying. Simulation results for several temperatures in the range of [30 °C, 90 °C] shows that for the temperature from 30 °C to 60 °C, Von Mises stresses are always lower than the yield strength. But above 70 °C, Von Mises stresses are higher than the ultimate strength, and consequently there is a risk of crack at the end of the constant drying rate period. The idea proposed in this work is to integrate a reducing temperature phase when the predicted Von Mises stress intensity exceeds the admissible stress. Simulation results shows that a non-stationary convective drying (90-60 °C) allows us to optimize costs and quality by reducing the drying time and maintaining Von Mises stress values under the admissible stress.

  8. A Novel Vehicle Stationary Detection Utilizing Map Matching and IMU Sensors

    Directory of Open Access Journals (Sweden)

    Md. Syedul Amin

    2014-01-01

    Full Text Available Precise navigation is a vital need for many modern vehicular applications. The global positioning system (GPS cannot provide continuous navigation information in urban areas. The widely used inertial navigation system (INS can provide full vehicle state at high rates. However, the accuracy diverges quickly in low cost microelectromechanical systems (MEMS based INS due to bias, drift, noise, and other errors. These errors can be corrected in a stationary state. But detecting stationary state is a challenging task. A novel stationary state detection technique from the variation of acceleration, heading, and pitch and roll of an attitude heading reference system (AHRS built from the inertial measurement unit (IMU sensors is proposed. Besides, the map matching (MM algorithm detects the intersections where the vehicle is likely to stop. Combining these two results, the stationary state is detected with a smaller timing window of 3 s. A longer timing window of 5 s is used when the stationary state is detected only from the AHRS. The experimental results show that the stationary state is correctly identified and the position error is reduced to 90% and outperforms previously reported work. The proposed algorithm would help to reduce INS errors and enhance the performance of the navigation system.

  9. Quasi parton distributions and the gradient flow

    International Nuclear Information System (INIS)

    Monahan, Christopher; Orginos, Kostas

    2017-01-01

    We propose a new approach to determining quasi parton distribution functions (PDFs) from lattice quantum chromodynamics. By incorporating the gradient flow, this method guarantees that the lattice quasi PDFs are finite in the continuum limit and evades the thorny, and as yet unresolved, issue of the renormalization of quasi PDFs on the lattice. In the limit that the flow time is much smaller than the length scale set by the nucleon momentum, the moments of the smeared quasi PDF are proportional to those of the lightfront PDF. Finally, we use this relation to derive evolution equations for the matching kernel that relates the smeared quasi PDF and the light-front PDF.

  10. Differential geometry of quasi-Sasakian manifolds

    International Nuclear Information System (INIS)

    Kirichenko, V F; Rustanov, A R

    2002-01-01

    The full system of structure equations of a quasi-Sasakian structure is obtained. The structure of the main tensors on a quasi-Sasakian manifold (the Riemann-Christoffel tensor, the Ricci tensor, and other tensors) is studied on this basis. Interesting characterizations of quasi-Sasakian Einstein manifolds are obtained. Additional symmetry properties of the Riemann-Christoffel tensor are discovered and used for distinguishing a new class of CR 1 quasi-Sasakian manifolds. An exhaustive description of the local structure of manifolds in this class is given. A complete classification (up to the B-transformation of the metric) is obtained for manifolds in this class having additional properties of the isotropy kind

  11. Fluctuation-dissipation relation and stationary distribution of an exactly solvable many-particle model for active biomatter far from equilibrium.

    Science.gov (United States)

    Netz, Roland R

    2018-05-14

    An exactly solvable, Hamiltonian-based model of many massive particles that are coupled by harmonic potentials and driven by stochastic non-equilibrium forces is introduced. The stationary distribution and the fluctuation-dissipation relation are derived in closed form for the general non-equilibrium case. Deviations from equilibrium are on one hand characterized by the difference of the obtained stationary distribution from the Boltzmann distribution; this is possible because the model derives from a particle Hamiltonian. On the other hand, the difference between the obtained non-equilibrium fluctuation-dissipation relation and the standard equilibrium fluctuation-dissipation theorem allows us to quantify non-equilibrium in an alternative fashion. Both indicators of non-equilibrium behavior, i.e., deviations from the Boltzmann distribution and deviations from the equilibrium fluctuation-dissipation theorem, can be expressed in terms of a single non-equilibrium parameter α that involves the ratio of friction coefficients and random force strengths. The concept of a non-equilibrium effective temperature, which can be defined by the relation between fluctuations and the dissipation, is by comparison with the exactly derived stationary distribution shown not to hold, even if the effective temperature is made frequency dependent. The analysis is not confined to close-to-equilibrium situations but rather is exact and thus holds for arbitrarily large deviations from equilibrium. Also, the suggested harmonic model can be obtained from non-linear mechanical network systems by an expansion in terms of suitably chosen deviatory coordinates; the obtained results should thus be quite general. This is demonstrated by comparison of the derived non-equilibrium fluctuation dissipation relation with experimental data on actin networks that are driven out of equilibrium by energy-consuming protein motors. The comparison is excellent and allows us to extract the non

  12. Fluctuation-dissipation relation and stationary distribution of an exactly solvable many-particle model for active biomatter far from equilibrium

    Science.gov (United States)

    Netz, Roland R.

    2018-05-01

    An exactly solvable, Hamiltonian-based model of many massive particles that are coupled by harmonic potentials and driven by stochastic non-equilibrium forces is introduced. The stationary distribution and the fluctuation-dissipation relation are derived in closed form for the general non-equilibrium case. Deviations from equilibrium are on one hand characterized by the difference of the obtained stationary distribution from the Boltzmann distribution; this is possible because the model derives from a particle Hamiltonian. On the other hand, the difference between the obtained non-equilibrium fluctuation-dissipation relation and the standard equilibrium fluctuation-dissipation theorem allows us to quantify non-equilibrium in an alternative fashion. Both indicators of non-equilibrium behavior, i.e., deviations from the Boltzmann distribution and deviations from the equilibrium fluctuation-dissipation theorem, can be expressed in terms of a single non-equilibrium parameter α that involves the ratio of friction coefficients and random force strengths. The concept of a non-equilibrium effective temperature, which can be defined by the relation between fluctuations and the dissipation, is by comparison with the exactly derived stationary distribution shown not to hold, even if the effective temperature is made frequency dependent. The analysis is not confined to close-to-equilibrium situations but rather is exact and thus holds for arbitrarily large deviations from equilibrium. Also, the suggested harmonic model can be obtained from non-linear mechanical network systems by an expansion in terms of suitably chosen deviatory coordinates; the obtained results should thus be quite general. This is demonstrated by comparison of the derived non-equilibrium fluctuation dissipation relation with experimental data on actin networks that are driven out of equilibrium by energy-consuming protein motors. The comparison is excellent and allows us to extract the non

  13. Performance Comparison of Orthogonal and Quasi-orthogonal Codes in Quasi-Synchronous Cellular CDMA Communication

    Science.gov (United States)

    Jos, Sujit; Kumar, Preetam; Chakrabarti, Saswat

    Orthogonal and quasi-orthogonal codes are integral part of any DS-CDMA based cellular systems. Orthogonal codes are ideal for use in perfectly synchronous scenario like downlink cellular communication. Quasi-orthogonal codes are preferred over orthogonal codes in the uplink communication where perfect synchronization cannot be achieved. In this paper, we attempt to compare orthogonal and quasi-orthogonal codes in presence of timing synchronization error. This will give insight into the synchronization demands in DS-CDMA systems employing the two classes of sequences. The synchronization error considered is smaller than chip duration. Monte-Carlo simulations have been carried out to verify the analytical and numerical results.

  14. Vacillations induced by interference of stationary and traveling planetary waves

    Science.gov (United States)

    Salby, Murry L.; Garcia, Rolando R.

    1987-01-01

    The interference pattern produced when a traveling planetary wave propagates over a stationary forced wave is explored, examining the interference signature in a variety of diagnostics. The wave field is first restricted to a diatomic spectrum consisting of two components: a single stationary wave and a single monochromatic traveling wave. A simple barotropic normal mode propagating over a simple stationary plane wave is considered, and closed form solutions are obtained. The wave fields are then restricted spatially, providing more realistic structures without sacrificing the advantages of an analytical solution. Both stationary and traveling wave fields are calculated numerically with the linearized Primitive Equations in a realistic basic state. The mean flow reaction to the fluctuating eddy forcing which results from interference is derived. Synoptic geopotential behavior corresponding to the combined wave and mean flow fields is presented, and the synoptic signature in potential vorticity on isentropic surfaces is examined.

  15. Costationarity of Locally Stationary Time Series Using costat

    OpenAIRE

    Cardinali, Alessandro; Nason, Guy P.

    2013-01-01

    This article describes the R package costat. This package enables a user to (i) perform a test for time series stationarity; (ii) compute and plot time-localized autocovariances, and (iii) to determine and explore any costationary relationship between two locally stationary time series. Two locally stationary time series are said to be costationary if there exists two time-varying combination functions such that the linear combination of the two series with the functions produces another time...

  16. Toward a Principled Sampling Theory for Quasi-Orders.

    Science.gov (United States)

    Ünlü, Ali; Schrepp, Martin

    2016-01-01

    Quasi-orders, that is, reflexive and transitive binary relations, have numerous applications. In educational theories, the dependencies of mastery among the problems of a test can be modeled by quasi-orders. Methods such as item tree or Boolean analysis that mine for quasi-orders in empirical data are sensitive to the underlying quasi-order structure. These data mining techniques have to be compared based on extensive simulation studies, with unbiased samples of randomly generated quasi-orders at their basis. In this paper, we develop techniques that can provide the required quasi-order samples. We introduce a discrete doubly inductive procedure for incrementally constructing the set of all quasi-orders on a finite item set. A randomization of this deterministic procedure allows us to generate representative samples of random quasi-orders. With an outer level inductive algorithm, we consider the uniform random extensions of the trace quasi-orders to higher dimension. This is combined with an inner level inductive algorithm to correct the extensions that violate the transitivity property. The inner level correction step entails sampling biases. We propose three algorithms for bias correction and investigate them in simulation. It is evident that, on even up to 50 items, the new algorithms create close to representative quasi-order samples within acceptable computing time. Hence, the principled approach is a significant improvement to existing methods that are used to draw quasi-orders uniformly at random but cannot cope with reasonably large item sets.

  17. Toward a Principled Sampling Theory for Quasi-Orders

    Science.gov (United States)

    Ünlü, Ali; Schrepp, Martin

    2016-01-01

    Quasi-orders, that is, reflexive and transitive binary relations, have numerous applications. In educational theories, the dependencies of mastery among the problems of a test can be modeled by quasi-orders. Methods such as item tree or Boolean analysis that mine for quasi-orders in empirical data are sensitive to the underlying quasi-order structure. These data mining techniques have to be compared based on extensive simulation studies, with unbiased samples of randomly generated quasi-orders at their basis. In this paper, we develop techniques that can provide the required quasi-order samples. We introduce a discrete doubly inductive procedure for incrementally constructing the set of all quasi-orders on a finite item set. A randomization of this deterministic procedure allows us to generate representative samples of random quasi-orders. With an outer level inductive algorithm, we consider the uniform random extensions of the trace quasi-orders to higher dimension. This is combined with an inner level inductive algorithm to correct the extensions that violate the transitivity property. The inner level correction step entails sampling biases. We propose three algorithms for bias correction and investigate them in simulation. It is evident that, on even up to 50 items, the new algorithms create close to representative quasi-order samples within acceptable computing time. Hence, the principled approach is a significant improvement to existing methods that are used to draw quasi-orders uniformly at random but cannot cope with reasonably large item sets. PMID:27965601

  18. Quasi-topological Ricci polynomial gravities

    Science.gov (United States)

    Li, Yue-Zhou; Liu, Hai-Shan; Lü, H.

    2018-02-01

    Quasi-topological terms in gravity can be viewed as those that give no contribution to the equations of motion for a special subclass of metric ansätze. They therefore play no rôle in constructing these solutions, but can affect the general perturbations. We consider Einstein gravity extended with Ricci tensor polynomial invariants, which admits Einstein metrics with appropriate effective cosmological constants as its vacuum solutions. We construct three types of quasi-topological gravities. The first type is for the most general static metrics with spherical, toroidal or hyperbolic isometries. The second type is for the special static metrics where g tt g rr is constant. The third type is the linearized quasitopological gravities on the Einstein metrics. We construct and classify results that are either dependent on or independent of dimensions, up to the tenth order. We then consider a subset of these three types and obtain Lovelock-like quasi-topological gravities, that are independent of the dimensions. The linearized gravities on Einstein metrics on all dimensions are simply Einstein and hence ghost free. The theories become quasi-topological on static metrics in one specific dimension, but non-trivial in others. We also focus on the quasi-topological Ricci cubic invariant in four dimensions as a specific example to study its effect on holography, including shear viscosity, thermoelectric DC conductivities and butterfly velocity. In particular, we find that the holographic diffusivity bounds can be violated by the quasi-topological terms, which can induce an extra massive mode that yields a butterfly velocity unbound above.

  19. Research and design of quasi-optical mode converter

    International Nuclear Information System (INIS)

    Liu Jianwei; Zhao Qing

    2013-01-01

    This paper presents a quasi-optical mode converter which can convert the output mode of gyrotrons and other high-power microwave oscillators into quasi-Gaussian beam, aiming to achieve transverse output of quasi-Gaussian beam TEM 00 mode. First, we analyze mode propagation in the waveguide and the working mechanism of the Vlasov launcher. Then the radiation fields are calculated using vector diffraction theory. At last a quasi-optical mode converter is designed to convert the 94 GHz, TE 62 mode millimeter wave into quasi-Gaussian beam with programming method. The results prove that quasi-Gaussian mode can be obtained at the output window with a simple Vlasov launcher and two mirrors, and the power transmission efficiency of the quasi-optical mode converter reaches to 87.5%. (authors)

  20. Non-stationary pre-envelope covariances of non-classically damped systems

    Science.gov (United States)

    Muscolino, G.

    1991-08-01

    A new formulation is given to evaluate the stationary and non-stationary response of linear non-classically damped systems subjected to multi-correlated non-separable Gaussian input processes. This formulation is based on a new and more suitable definition of the impulse response function matrix for such systems. It is shown that, when using this definition, the stochastic response of non-classically damped systems involves the evaluation of quantities similar to those of classically damped ones. Furthermore, considerations about non-stationary cross-covariances, spectral moments and pre-envelope cross-covariances are presented for a monocorrelated input process.

  1. A case study of evolutionary computation of biochemical adaptation

    International Nuclear Information System (INIS)

    François, Paul; Siggia, Eric D

    2008-01-01

    Simulations of evolution have a long history, but their relation to biology is questioned because of the perceived contingency of evolution. Here we provide an example of a biological process, adaptation, where simulations are argued to approach closer to biology. Adaptation is a common feature of sensory systems, and a plausible component of other biochemical networks because it rescales upstream signals to facilitate downstream processing. We create random gene networks numerically, by linking genes with interactions that model transcription, phosphorylation and protein–protein association. We define a fitness function for adaptation in terms of two functional metrics, and show that any reasonable combination of them will yield the same adaptive networks after repeated rounds of mutation and selection. Convergence to these networks is driven by positive selection and thus fast. There is always a path in parameter space of continuously improving fitness that leads to perfect adaptation, implying that the actual mutation rates we use in the simulation do not bias the results. Our results imply a kinetic view of evolution, i.e., it favors gene networks that can be learned quickly from the random examples supplied by mutation. This formulation allows for deductive predictions of the networks realized in nature

  2. Autocatalytic sets in a partitioned biochemical network.

    Science.gov (United States)

    Smith, Joshua I; Steel, Mike; Hordijk, Wim

    2014-01-01

    In previous work, RAF theory has been developed as a tool for making theoretical progress on the origin of life question, providing insight into the structure and occurrence of self-sustaining and collectively autocatalytic sets within catalytic polymer networks. We present here an extension in which there are two "independent" polymer sets, where catalysis occurs within and between the sets, but there are no reactions combining polymers from both sets. Such an extension reflects the interaction between nucleic acids and peptides observed in modern cells and proposed forms of early life. We present theoretical work and simulations which suggest that the occurrence of autocatalytic sets is robust to the partitioned structure of the network. We also show that autocatalytic sets remain likely even when the molecules in the system are not polymers, and a low level of inhibition is present. Finally, we present a kinetic extension which assigns a rate to each reaction in the system, and show that identifying autocatalytic sets within such a system is an NP-complete problem. Recent experimental work has challenged the necessity of an RNA world by suggesting that peptide-nucleic acid interactions occurred early in chemical evolution. The present work indicates that such a peptide-RNA world could support the spontaneous development of autocatalytic sets and is thus a feasible alternative worthy of investigation.

  3. Combined effect of storm movement and drainage network configuration on flood peaks

    Science.gov (United States)

    Seo, Yongwon; Son, Kwang Ik; Choi, Hyun Il

    2016-04-01

    This presentation reports the combined effect of storm movement and drainage network layout on resulting hydrographs and its implication to flood process and also flood mitigation. First, we investigate, in general terms, the effects of storm movement on the resulting flood peaks, and the underlying process controls. For this purpose, we utilize a broad theoretical framework that uses characteristic time and space scales associated with stationary rainstorms as well as moving rainstorms. For a stationary rainstorm the characteristic timescales that govern the peak response include two intrinsic timescales of a catchment and one extrinsic timescale of a rainstorm. On the other hand, for a moving rainstorm, two additional extrinsic scales are required; the storm travel time and storm size. We show that the relationship between the peak response and the timescales appropriate for a stationary rainstorm can be extended in a straightforward manner to describe the peak response for a moving rainstorm. For moving rainstorms, we show that the augmentation of peak response arises from both effect of overlaying the responses from subcatchments (resonance condition) and effect of increased responses from subcatchments due to increased duration (interdependence), which results in maximum peak response when the moving rainstorm is slower than the channel flow velocity. Second, we show the relation between channel network configurations and hydrograph sensitivity to storm kinematics. For this purpose, Gibbs' model is used to evaluate the network characteristics. The results show that the storm kinematics that produces the maximum peak discharge depends on the network configuration because the resonance condition changes with the network configuration. We show that an "efficient" network layout is more sensitive and results in higher increase in peak response compared to "inefficient" one. These results imply different flood potential risks for river networks depending on network

  4. RadNet Radiological Air Monitoring Network

    International Nuclear Information System (INIS)

    Scott Telofski, J.; Askren, D.R.; Petko, Ch.M.; Fraass, R.G.

    2010-01-01

    The United States Environmental Protection Agency operates a national environmental radiation monitoring program called RadNet. RadNet monitors airborne particulates, precipitation, milk, and drinking water for radiation levels. The primary purpose of the original program in the 1950's and 1960's was to collect and analyze samples in various media to assess the effects of radioactive fallout from above-ground nuclear weapon testing. As above-ground testing diminished in the 1970's, the program, especially the air network, became critical in evaluating effects of other types of nuclear incidents, such as the nuclear reactor accident at Chernobyl, as well as monitoring trends in environmental radioactive contamination. The value of rapid data collection subsequent to such incidents led to the consideration of developing air monitors with radiation detectors and telecommunication equipment for real-time radiation measurement. The strengthened United States homeland security posture after 2001 led to production and installation of the current real-time RadNet air monitors. There are now 118 stationary, continuously operating air monitoring stations and 40 mobile air monitors for site specific monitoring. The stationary air monitors include radiation detectors, meteorological sensors, a high-volume air sampler, and communication devices for hourly data transfers. When unusual levels are detected, scientists download a full sodium iodide detector spectrum for analysis. The real-time data collected by RadNet stationary systems permit rapid identification and quantification of airborne nuclides with sufficient sensitivity to provide critical information to help determine protective actions. The data also may help to rapidly refine long-range radioactive plume models and estimate exposure to the population. This paper provides an overview of the airborne particulate monitoring conducted during above-ground nuclear weapon testing, summarizes the uses of data from the program

  5. Multi-quasi-particle states in 173Hf

    International Nuclear Information System (INIS)

    Fabricius, B.; Dracoulis, G.D.; Kibedi, T.; Stuchbery, A.E.; Baxter, A.M.

    1991-01-01

    Rotational bands built on 1, 3 and 5 quasi-particle (qp) states in 173 Hf have been populated to medium and high spins through the 160 Gd( 18 O, 5n) reaction. The 1qp bands, previously identified as the 1/2 - [521], 5/2 - [512] and 7/2 + [633] (mixed i 13/2 ) Nilsson configurations, have been extended past the first back-bend and show different alignment properties, possibly originating from deformation differences. The multi-particle states were identified from excitation energies, the properties of their associated band structures and decay patterns. The 3qp states are the previously known K π =19/2 + and 23/2 - isomeric states originating from the 7/2 + [633] quasi-neutron coupled to the 6 + and 8 - , 2-quasi-proton excitations and a K π =(13/2 + ) state possibly containing the three lowest quasi-neutrons. A 5qp state with K π =(29/2 - ) was identified as the same three lowest lying quasi-neutrons coupled to the 8 - , 2-quasi-proton excitation. The low excitation energies of these two related 3- and 5-quasi-particle states implies a reduced neutron pairing gap, which can be attributed to the effect of blocking. (orig.)

  6. Hydrogen Fuel Cell Analysis: Lessons Learned from Stationary Power Generation Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Scott E. Grasman; John W. Sheffield; Fatih Dogan; Sunggyu Lee; Umit O. Koylu; Angie Rolufs

    2010-04-30

    This study considered opportunities for hydrogen in stationary applications in order to make recommendations related to RD&D strategies that incorporate lessons learned and best practices from relevant national and international stationary power efforts, as well as cost and environmental modeling of pathways. The study analyzed the different strategies utilized in power generation systems and identified the different challenges and opportunities for producing and using hydrogen as an energy carrier. Specific objectives included both a synopsis/critical analysis of lessons learned from previous stationary power programs and recommendations for a strategy for hydrogen infrastructure deployment. This strategy incorporates all hydrogen pathways and a combination of distributed power generating stations, and provides an overview of stationary power markets, benefits of hydrogen-based stationary power systems, and competitive and technological challenges. The motivation for this project was to identify the lessons learned from prior stationary power programs, including the most significant obstacles, how these obstacles have been approached, outcomes of the programs, and how this information can be used by the Hydrogen, Fuel Cells & Infrastructure Technologies Program to meet program objectives primarily related to hydrogen pathway technologies (production, storage, and delivery) and implementation of fuel cell technologies for distributed stationary power. In addition, the lessons learned address environmental and safety concerns, including codes and standards, and education of key stakeholders.

  7. The quasi-biennial oscillation of 1.7 years in ground level enhancement events

    Science.gov (United States)

    Velasco Herrera, V. M.; Pérez-Peraza, J.; Soon, W.; Márquez-Adame, J. C.

    2018-04-01

    The so-called Ground Level Enhancement events are sporadic relativistic solar particles measured at ground level by a network of cosmic ray detectors worldwide. These sporadic events are typically assumed to occur by random chance. However, we find that by studying the last 56 ground level enhancement events reported from 1966 through 2014, these events occur preferentially in the positive phase of the quasi-biennial oscillation of 1.7 year periodicity. These discrete ground level enhancement events show that there is another type of solar emission (i.e., wavelike packets) that occurs only in a specific phase of a very particular oscillation. We interpret this empirical result to support that ground level enhancement events are not a result of purely stochastic processes. We used the Morlet wavelet to analyze the phase of each of the periodicities found by the wavelet analyses and local variations of power spectral density in these sporadic events. We found quasi-regular periodicities of 10.4, 6.55, 4.12, 2.9, 1.73, 0.86, 0.61, 0.4 and 0.24 years in ground level enhancements. Although some of these quasi-biennial oscillation periodicities (i.e., oscillations operating between 0.6 and 4 years) may be interpreted as simply harmonics and overtones of the fundamental solar cycle from the underlying sun-spot magnetism phenomenon. The sources of these periodicities are still unclear. Also there is no clear mechanism for the variability of the quasi-biennial oscillation periodicities itself. The quasi-biennial oscillation periodicities are broadly considered to be a variation of solar activity, associated with the solar dynamo process. Also, the intensity of these periodicities is more important around the years of maximum solar activity because the quasi-biennial oscillation periodicities are modulated by the solar cycle where the Sun is more energetically enhanced during activity maxima. To identify the relationships among ground level enhancement, solar, and cosmic

  8. Embedding recurrent neural networks into predator-prey models.

    Science.gov (United States)

    Moreau, Yves; Louiès, Stephane; Vandewalle, Joos; Brenig, Leon

    1999-03-01

    We study changes of coordinates that allow the embedding of ordinary differential equations describing continuous-time recurrent neural networks into differential equations describing predator-prey models-also called Lotka-Volterra systems. We transform the equations for the neural network first into quasi-monomial form (Brenig, L. (1988). Complete factorization and analytic solutions of generalized Lotka-Volterra equations. Physics Letters A, 133(7-8), 378-382), where we express the vector field of the dynamical system as a linear combination of products of powers of the variables. In practice, this transformation is possible only if the activation function is the hyperbolic tangent or the logistic sigmoid. From this quasi-monomial form, we can directly transform the system further into Lotka-Volterra equations. The resulting Lotka-Volterra system is of higher dimension than the original system, but the behavior of its first variables is equivalent to the behavior of the original neural network. We expect that this transformation will permit the application of existing techniques for the analysis of Lotka-Volterra systems to recurrent neural networks. Furthermore, our results show that Lotka-Volterra systems are universal approximators of dynamical systems, just as are continuous-time neural networks.

  9. STATIONARY HIGH-PERFORMANCE DISCHARGES IN THE DIII-D TOKAMAK

    International Nuclear Information System (INIS)

    LUCE, TC; WADE, MR; FERRON, JR; HYATT, AW; KELLMAN, AG; KINSEY, JE; LAHAYE, RJ; LASNIER, CJ; MURAKAMI, M; POLITZER, PA; SCOVILLE, JT

    2002-01-01

    A271 STATIONARY HIGH-PERFORMANCE DISCHARGES IN THE DII-D TOKAMAK. Discharges which can satisfy the high gain goals of burning plasma experiments have been demonstrated in the DIII-D tokamak under stationary conditions at relatively low plasma current (q 95 > 4). A figure of merit for fusion gain (β N H 89 /q 95 2 ) has been maintained at values corresponding to | = 10 operation in a burning plasma for > 6 s or 36τ E and 2τ R . The key element is the relaxation of the current profile to a stationary state with q min > 1. In the absence of sawteeth and fishbones, stable operation has been achieved up to the estimated no-wall β limit. Feedback control of the energy content and particle inventory allow reproducible, stationary operation. The particle inventory is controlled by gas fueling and active pumping; the wall plays only a small role in the particle balance. The reduced current lessens significantly the potential for structural damage in the event of a major disruption. In addition, the pulse length capability is greatly increased, which is essential for a technology testing phase of a burning plasma experiment where fluence (duty cycle) is important

  10. Stationary strings near a higher-dimensional rotating black hole

    International Nuclear Information System (INIS)

    Frolov, Valeri P.; Stevens, Kory A.

    2004-01-01

    We study stationary string configurations in a space-time of a higher-dimensional rotating black hole. We demonstrate that the Nambu-Goto equations for a stationary string in the 5D (five-dimensional) Myers-Perry metric allow a separation of variables. We present these equations in the first-order form and study their properties. We prove that the only stationary string configuration that crosses the infinite redshift surface and remains regular there is a principal Killing string. A worldsheet of such a string is generated by a principal null geodesic and a timelike at infinity Killing vector field. We obtain principal Killing string solutions in the Myers-Perry metrics with an arbitrary number of dimensions. It is shown that due to the interaction of a string with a rotating black hole, there is an angular momentum transfer from the black hole to the string. We calculate the rate of this transfer in a space-time with an arbitrary number of dimensions. This effect slows down the rotation of the black hole. We discuss possible final stationary configurations of a rotating black hole interacting with a string

  11. Computing with competition in biochemical networks.

    Science.gov (United States)

    Genot, Anthony J; Fujii, Teruo; Rondelez, Yannick

    2012-11-16

    Cells rely on limited resources such as enzymes or transcription factors to process signals and make decisions. However, independent cellular pathways often compete for a common molecular resource. Competition is difficult to analyze because of its nonlinear global nature, and its role remains unclear. Here we show how decision pathways such as transcription networks may exploit competition to process information. Competition for one resource leads to the recognition of convex sets of patterns, whereas competition for several resources (overlapping or cascaded regulons) allows even more general pattern recognition. Competition also generates surprising couplings, such as correlating species that share no resource but a common competitor. The mechanism we propose relies on three primitives that are ubiquitous in cells: multiinput motifs, competition for a resource, and positive feedback loops.

  12. Brownian quasi-particles in statistical physics

    International Nuclear Information System (INIS)

    Tellez-Arenas, A.; Fronteau, J.; Combis, P.

    1979-01-01

    The idea of a Brownian quasi-particle and the associated differentiable flow (with nonselfadjoint forces) are used here in the context of a stochastic description of the approach towards statistical equilibrium. We show that this quasi-particle flow acquires, at equilibrium, the principal properties of a conservative Hamiltonian flow. Thus the model of Brownian quasi-particles permits us to establish a link between the stochastic description and the Gibbs description of statistical equilibrium

  13. Statistical physics of interacting neural networks

    Science.gov (United States)

    Kinzel, Wolfgang; Metzler, Richard; Kanter, Ido

    2001-12-01

    Recent results on the statistical physics of time series generation and prediction are presented. A neural network is trained on quasi-periodic and chaotic sequences and overlaps to the sequence generator as well as the prediction errors are calculated numerically. For each network there exists a sequence for which it completely fails to make predictions. Two interacting networks show a transition to perfect synchronization. A pool of interacting networks shows good coordination in the minority game-a model of competition in a closed market. Finally, as a demonstration, a perceptron predicts bit sequences produced by human beings.

  14. An influence diagram for urban flood risk assessment through pluvial flood hazards under non-stationary conditions

    DEFF Research Database (Denmark)

    Åström, Helena Lisa Alexandra; Friis Hansen, P.; Garrè, Luca

    2014-01-01

    Urban flooding introduces significant risk to society. Non-stationarity leads to increased uncertainty and this is challenging to include in actual decision-making. The primary objective of this study was to develop a risk assessment and decision support framework for pluvial urban flood risk under...... non-stationary conditions using an influence diagram (ID) which is a Bayesian network (BN) extended with decision and utility nodes. Non-stationarity is considered to be the influence of climate change where extreme precipitation patterns change over time. The overall risk is quantified in monetary...... terms expressed as expected annual damage. The network is dynamic in as much as it assesses risk at different points in time. The framework provides means for decision-makers to assess how different decisions on flood adaptation affect the risk now and in the future. The result from the ID was extended...

  15. Quantum field theory in stationary coordinate systems

    International Nuclear Information System (INIS)

    Pfautsch, J.D.

    1981-01-01

    Quantum field theory is examined in stationary coordinate systems in Minkowski space. Preliminary to quantization of the scalar field, all of the possible stationary coordinate systems in flat spacetime are classified and explicitly constructed. Six distinct classes of such systems are found. Of these six, three have (identical) event horizons associated with them and five have Killing horizons. Two classes have distinct Killing and event horizons, with an intervening region analogous to the ergosphere in rotating black holes. Particular representatives of each class are selected for subsequent use in the quantum field theory. The scalar field is canonically quantized and a vacuum defined in each of the particular coordinate systems chosen. The vacuum states can be regarded as adapted to the six classes of stationary motions. There are only two vacuum states found, the Minkowski vacuum in those coordinate systems without event horizons and the Fulling vacuum in those with event horizons. The responses of monopole detectors traveling along stationary world lines are calculated in both the Minkowski and Fulling vacuums. The responses for each class of motions are distinct from those for every other class. A vacuum defined by the response of a detector must therefore not be equivalent in general to a vacuum defined by canonical quantization. Quantization of the scalar field within a rotating wedge is examined. It has not been possible to construct mode functions satisfying appropriate boundary conditions on the surface of the wedge. The asymptotic form of the renormalized stress tensor near the surfaces had been calculated and is found to include momentum terms which represent a circulation of energy within the wedge

  16. Quasi-periodic luminosity variations in dwarf novae

    International Nuclear Information System (INIS)

    Robinson, E.L.; Nather, R.E.

    1979-01-01

    We have identified quasi-periodic oscillations in the light curves of five dwarf novae--U Gem, SS Cyg, RU Peg, KT Per, and VW Hyi-- and in the light curve of the quasi-periodic X-ray source Sco X-1. The mean periods of the quasi-periodic oscillations range from 32 s in SS Cyg to 147 s in KT Per and 165 s in Sco X-l. Their amplitudes are typically 0.005--0.0l mag. The properties of the quasi-periodic oscillations are represented well by a second-order autoregressive process. Use of this representation shows that the length of time over which the quasi-periodic oscillations maintain coherence is very short, typically 3--5 cycles of the oscillations. Thus the quasi-periodic oscillations can be distinguished from the short-period coherent oscillations in dwarf novae, which are usually interpreted as white dwarf pulsations, because t the periods of the quasi-periodic oscillations are 3--4 times longer and their coherence time is much shorter. The quasi-periodic oscillations occur in dwarf novae only during their eruptions and occur in Sco X-l only when the system is bright. The presence of the oscillations does not depend on the subclass to which a dwarf nova belongs or on the morphology of the individual eruptions. We argue that their short periods, their short coherence times, and their presence in Sco X-l require that the quasi-periodic oscillations be produced by the accretion disk, and not by the stars or by the boundary between the a accretion disk and its central star

  17. Geophysics-based method of locating a stationary earth object

    Science.gov (United States)

    Daily, Michael R [Albuquerque, NM; Rohde, Steven B [Corrales, NM; Novak, James L [Albuquerque, NM

    2008-05-20

    A geophysics-based method for determining the position of a stationary earth object uses the periodic changes in the gravity vector of the earth caused by the sun- and moon-orbits. Because the local gravity field is highly irregular over a global scale, a model of local tidal accelerations can be compared to actual accelerometer measurements to determine the latitude and longitude of the stationary object.

  18. Prediction of deformations of steel plate by artificial neural network in forming process with induction heating

    International Nuclear Information System (INIS)

    Nguyen, Truong Thinh; Yang, Young Soo; Bae, Kang Yul; Choi, Sung Nam

    2009-01-01

    To control a heat source easily in the forming process of steel plate with heating, the electro-magnetic induction process has been used as a substitute of the flame heating process. However, only few studies have analyzed the deformation of a workpiece in the induction heating process by using a mathematical model. This is mainly due to the difficulty of modeling the heat flux from the inductor traveling on the conductive plate during the induction process. In this study, the heat flux distribution over a steel plate during the induction process is first analyzed by a numerical method with the assumption that the process is in a quasi-stationary state around the inductor and also that the heat flux itself greatly depends on the temperature of the workpiece. With the heat flux, heat flow and thermo-mechanical analyses on the plate to obtain deformations during the heating process are then performed with a commercial FEM program for 34 combinations of heating parameters. An artificial neural network is proposed to build a simplified relationship between deformations and heating parameters that can be easily utilized to predict deformations of steel plate with a wide range of heating parameters in the heating process. After its architecture is optimized, the artificial neural network is trained with the deformations obtained from the FEM analyses as outputs and the related heating parameters as inputs. The predicted outputs from the neural network are compared with those of the experiments and the numerical results. They are in good agreement

  19. Generalized quasi variational inequalities

    Energy Technology Data Exchange (ETDEWEB)

    Noor, M.A. [King Saud Univ., Riyadh (Saudi Arabia)

    1996-12-31

    In this paper, we establish the equivalence between the generalized quasi variational inequalities and the generalized implicit Wiener-Hopf equations using essentially the projection technique. This equivalence is used to suggest and analyze a number of new iterative algorithms for solving generalized quasi variational inequalities and the related complementarity problems. The convergence criteria is also considered. The results proved in this paper represent a significant improvement and refinement of the previously known results.

  20. LPTAU, Quasi Random Sequence Generator

    International Nuclear Information System (INIS)

    Sobol, Ilya M.

    1993-01-01

    1 - Description of program or function: LPTAU generates quasi random sequences. These are uniformly distributed sets of L=M N points in the N-dimensional unit cube: I N =[0,1]x...x[0,1]. These sequences are used as nodes for multidimensional integration; as searching points in global optimization; as trial points in multi-criteria decision making; as quasi-random points for quasi Monte Carlo algorithms. 2 - Method of solution: Uses LP-TAU sequence generation (see references). 3 - Restrictions on the complexity of the problem: The number of points that can be generated is L 30 . The dimension of the space cannot exceed 51

  1. Supersonic quasi-axisymmetric vortex breakdown

    Science.gov (United States)

    Kandil, Osama A.; Kandil, Hamdy A.; Liu, C. H.

    1991-01-01

    An extensive computational study of supersonic quasi-axisymmetric vortex breakdown in a configured circular duct is presented. The unsteady, compressible, full Navier-Stokes (NS) equations are used. The NS equations are solved for the quasi-axisymmetric flows using an implicit, upwind, flux difference splitting, finite volume scheme. The quasi-axisymmetric solutions are time accurate and are obtained by forcing the components of the flowfield vector to be equal on two axial planes, which are in close proximity of each other. The effect of Reynolds number, for laminar flows, on the evolution and persistence of vortex breakdown, is studied. Finally, the effect of swirl ration at the duct inlet is investigated.

  2. Modeling stationary and dynamic pebbles in a pebble bed reactor

    International Nuclear Information System (INIS)

    Zhao, Xiang; Montgomery, Trent; Zhang, Sijun

    2011-01-01

    This paper presents a numerical study of the stationary and dynamic pebbles in a pebble bed reactor (PBR) by means of discrete element method (DEM). At first, the packing structure of stationary pebbles is simulated by filling process until the settling of pebbles into PBR. The packing structural properties are obtained and analyzed. Subsequently, when the outlet of PBR is open during the operational maintenance of PBR, the stationary pebbles start to flow downward and are removed at the bottom of PBR. The dynamic behavior of pebbles is predicted and discussed. Our results indicate the DEM can offer both macroscopic and microscopic information for PBR design calculations and safety assessment. (author)

  3. Positron creation in superheavy quasi-molecules

    International Nuclear Information System (INIS)

    Mueller, B.

    1976-01-01

    The review of positron creation in superheavy quasi-molecules includes spontaneous positron emission from superheavy atoms, supercritical quasi-molecules, background effects, and some implications of the new ground state. 66 references

  4. Quantum Quasi-Paradoxes and Quantum Sorites Paradoxes

    CERN Document Server

    Smarandache, F

    1997-01-01

    There can be generated many paradoxes or quasi-paradoxes that may occur from the combination of quantum and non-quantum worlds in physics. Even the passage from the micro-cosmos to the macro-cosmos, and reciprocally, can generate unsolved questions or counter-intuitive ideas. We define a quasi-paradox as a statement which has a prima facie self-contradictory support or an explicit contradiction, but which is not completely proven as a paradox. We present herein four elementary quantum quasi-paradoxes and their corresponding quantum Sorites paradoxes, which form a class of quantum quasi-paradoxes.

  5. Multi-quasi-particles states in 173Hf

    International Nuclear Information System (INIS)

    Fabricius, B.; Dracoulis, G.D.; Kibedi, T.; Stuchbery, A.E.; Baxter, A.M.

    1990-10-01

    Rotational bands built on 1, 3 and 5 quasi-particle (qp) states in 173 Hf have been populated to medium and high spins through the 160 Gd ( 18 O,5n) reaction. The 1qp bands, previously identified as the 1/2 - [521], 5/2 - [512] and 7/2 + [633] (mixed i 1 3 /2 ) Nilsson configurations, have been extended past the first back-bend and show different alignment properties, possibly originating from deformation differences. The multi-particle states were identified from excitation energies, the properties of their associated band structures and decay patterns. The 3 qp states are the previously known K π 19/2 + and 23/2 - isomeric states originating from the 7/2 + [633] quasi-neutron coupled to the 6 + and 8 - , 2-quasi-proton excitations and a K π = (13/2 + ) state possibly containing the three lowest quasi-neutrons. A 5 qp state with K π = (29/2 - ) was identified as the same three lowest lying quasi-neutrons coupled to the 8 - , 2-quasi-proton excitation. The low excitation energies of these two related 3- and 5-quasi-particle states implies a reduced neutron pairing gap, which can be attributed to the effect of blocking. 28 refs., 2 tabs., 9 figs

  6. Quasi experimental designs in pharmacist intervention research.

    Science.gov (United States)

    Krass, Ines

    2016-06-01

    Background In the field of pharmacist intervention research it is often difficult to conform to the rigorous requirements of the "true experimental" models, especially the requirement of randomization. When randomization is not feasible, a practice based researcher can choose from a range of "quasi-experimental designs" i.e., non-randomised and at time non controlled. Objective The aim of this article was to provide an overview of quasi-experimental designs, discuss their strengths and weaknesses and to investigate their application in pharmacist intervention research over the previous decade. Results In the literature quasi experimental studies may be classified into five broad categories: quasi-experimental design without control groups; quasi-experimental design that use control groups with no pre-test; quasi-experimental design that use control groups and pre-tests; interrupted time series and stepped wedge designs. Quasi-experimental study design has consistently featured in the evolution of pharmacist intervention research. The most commonly applied of all quasi experimental designs in the practice based research literature are the one group pre-post-test design and the non-equivalent control group design i.e., (untreated control group with dependent pre-tests and post-tests) and have been used to test the impact of pharmacist interventions in general medications management as well as in specific disease states. Conclusion Quasi experimental studies have a role to play as proof of concept, in the pilot phases of interventions when testing different intervention components, especially in complex interventions. They serve to develop an understanding of possible intervention effects: while in isolation they yield weak evidence of clinical efficacy, taken collectively, they help build a body of evidence in support of the value of pharmacist interventions across different practice settings and countries. However, when a traditional RCT is not feasible for

  7. Stationary theory of scattering

    International Nuclear Information System (INIS)

    Kato, T.

    1977-01-01

    A variant of the stationary methods is described, and it is shown that it is useful in a wide range of problems, including scattering, by long-range potentials, two-space scattering, and multichannel scattering. The method is based on the notion of spectral forms. The paper is restricted to the simplest case of continuous spectral forms defined on a Banach space embedded in the basic Hilbert space. (P.D.)

  8. Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

    Science.gov (United States)

    Khan, Faiz M; Schmitz, Ulf; Nikolov, Svetoslav; Engelmann, David; Pützer, Brigitte M; Wolkenhauer, Olaf; Vera, Julio

    2014-01-01

    A decade of successful results indicates that systems biology is the appropriate approach to investigate the regulation of complex biochemical networks involving transcriptional and post-transcriptional regulations. It becomes mandatory when dealing with highly interconnected biochemical networks, composed of hundreds of compounds, or when networks are enriched in non-linear motifs like feedback and feedforward loops. An emerging dilemma is to conciliate models of massive networks and the adequate description of non-linear dynamics in a suitable modeling framework. Boolean networks are an ideal representation of massive networks that are humble in terms of computational complexity and data demand. However, they are inappropriate when dealing with nested feedback/feedforward loops, structural motifs common in biochemical networks. On the other hand, models of ordinary differential equations (ODEs) cope well with these loops, but they require enormous amounts of quantitative data for a full characterization of the model. Here we propose hybrid models, composed of ODE and logical sub-modules, as a strategy to handle large scale, non-linear biochemical networks that include transcriptional and post-transcriptional regulations. We illustrate the construction of this kind of models using as example a regulatory network centered on E2F1, a transcription factor involved in cancer. The hybrid modeling approach proposed is a good compromise between quantitative/qualitative accuracy and scalability when considering large biochemical networks with a small highly interconnected core, and module of transcriptionally regulated genes that are not part of critical regulatory loops. This article is part of a Special Issue entitled: Computational Proteomics, Systems Biology & Clinical Implications. Guest Editor: Yudong Cai. Copyright © 2013 Elsevier B.V. All rights reserved.

  9. Detection of nonstationary transition to synchronized states of a neural network using recurrence analyses

    Science.gov (United States)

    Budzinski, R. C.; Boaretto, B. R. R.; Prado, T. L.; Lopes, S. R.

    2017-07-01

    We study the stability of asymptotic states displayed by a complex neural network. We focus on the loss of stability of a stationary state of networks using recurrence quantifiers as tools to diagnose local and global stabilities as well as the multistability of a coupled neural network. Numerical simulations of a neural network composed of 1024 neurons in a small-world connection scheme are performed using the model of Braun et al. [Int. J. Bifurcation Chaos 08, 881 (1998), 10.1142/S0218127498000681], which is a modified model from the Hodgkin-Huxley model [J. Phys. 117, 500 (1952)]. To validate the analyses, the results are compared with those produced by Kuramoto's order parameter [Chemical Oscillations, Waves, and Turbulence (Springer-Verlag, Berlin Heidelberg, 1984)]. We show that recurrence tools making use of just integrated signals provided by the networks, such as local field potential (LFP) (LFP signals) or mean field values bring new results on the understanding of neural behavior occurring before the synchronization states. In particular we show the occurrence of different stationary and nonstationarity asymptotic states.

  10. Stationary neoclassical profiles of plasma parameters in stellarators

    International Nuclear Information System (INIS)

    Danilkin, I.S.; Mineev, A.B.

    1991-01-01

    Peculiarities of neoclassical model of heat and particle transfer, occuring by calculations of plasma stationary profile parameters in stellarators are considered. The main peculiarity out of all consists in ineadequate compatibility with real physical conditions on the boundary, requiring application of supplementary 'anomalous' transfer or special (but technically possible) adjustment of particle and heat sources to achieve solution in form of 'correct' monotonically sloping profile. It is stated, that neoclassical theory does not provide for well-known ambiguity of solutions for ambipolar electrical field by search of monotonous stationary profiles supported by outside sources

  11. Spin in stationary gravitational fields and rotating frames

    International Nuclear Information System (INIS)

    Obukhov, Yuri N.; Silenko, Alexander J.; Teryaev, Oleg V.

    2010-01-01

    A spin motion of particles in stationary spacetimes is investigated in the framework of the classical gravity and relativistic quantum mechanics. We bring the Dirac equation for relativistic particles in nonstatic spacetimes to the Hamiltonian form and perform the Foldy-Wouthuysen transformation. We show the importance of the choice of tetrads for description of spin dynamics in the classical gravity. We derive classical and quantum mechanical equations of motion of the spin for relativistic particles in stationary gravitational fields and rotating frames and establish the full agreement between the classical and quantum mechanical approaches.

  12. Backset-stationary and during car driving.

    Science.gov (United States)

    Jonsson, Bertil; Stenlund, Hans; Björnstig, Ulf

    2008-12-01

    The aim of the study was to measure and analyze backset, defined as the horizontal distance between the back of the occupant's head and a point located on the ventral/top aspect of the sewn rim of the head restraint, with the car stationary and during driving, in the driver's position in a modern car. A population of 65 subjects, 35 males and 30 females, was studied in a Volvo V70 car, model year 2007. The subjects were studied in the driver's position, in a self-selected posture. Stationary backset was measured with the technique described by Jonsson et al. (2007) and backset during driving with video analysis. Descriptive data were calculated, and variability and correlation analyses were performed. A t-test was used to test differences of means. Significance level was set to 0.05. In comparison to stationary backset, mean backset during driving was 43 mm greater in males and 41 mm greater in females. Driving backset was 44 mm larger in males than in females. Driving backset was moderately correlated (0.37-0.43) to stature, seated height, and seat back angle in males and moderately correlated (0.44-0.52) to hip width, waist circumference, and weight in females. The overall intraclass correlation coefficient for backset during driving was 0.81 (CI: 0.75-0.86). These results may be of use in designing future updates of test protocols/routines for geometric backset, such as RCAR and RCAR-IIWPG.

  13. Stationary flywheel energy storage

    Energy Technology Data Exchange (ETDEWEB)

    Gilhaus, A; Hau, E; Gassner, G; Huss, G; Schauberger, H

    1981-01-01

    The aim of this system study is to find out industrial applications of stationary flywheel energy accumulators. The economic value for the consumer and the effects on the power supply grid are investigated. Up to now, stationary flywheel energy accumulators have only been used in a small range. The main reason for thinking of the application in a wider range was the hope that those could be used economically for lowering the maximum output demand of the power supply grid. The possible savings in energy costs, however, proved to be too small for paying back the investment costs. Further benefits are necessary for advantageous application. As to overall economy, compensation of short time maximum power output seems to be more favorable at the power stations. An additional possibility for energy storage by flywheels is given where otherwise lost energy can be used effectively, according to the successful brake energy storage in vehicles. Under this aspect the future use of flywheels in wind-power-plants seems to be promising. Attractive savings of energy can be obtained by introducing modern flywheel technology for emergency power supply units which are employed for instance in telecommunication systems. Especially the application for emergency power supply, in power stations and in combustion with wind energy converters need further investigation.

  14. Quantum Quasi-Paradoxes and Quantum Sorites Paradoxes

    Directory of Open Access Journals (Sweden)

    Smarandache F.

    2005-04-01

    Full Text Available There can be generated many paradoxes or quasi-paradoxes that may occur from the combination of quantum and non-quantum worlds in physics. Even the passage from the micro-cosmos to the macro-cosmos, and reciprocally, can generate unsolved questions or counter-intuitive ideas. We define a quasi-paradox as a statement which has a prima facie self-contradictory support or an explicit contradiction, but which is not completely proven as a paradox. We present herein four elementary quantum quasi-paradoxes and their corresponding quantum Sorites paradoxes, which form a class of quantum quasi-paradoxes.

  15. Distinguishing Stationary/Nonstationary Scaling Processes Using Wavelet Tsallis q-Entropies

    Directory of Open Access Journals (Sweden)

    Julio Ramirez Pacheco

    2012-01-01

    Full Text Available Classification of processes as stationary or nonstationary has been recognized as an important and unresolved problem in the analysis of scaling signals. Stationarity or nonstationarity determines not only the form of autocorrelations and moments but also the selection of estimators. In this paper, a methodology for classifying scaling processes as stationary or nonstationary is proposed. The method is based on wavelet Tsallis q-entropies and particularly on the behaviour of these entropies for scaling signals. It is demonstrated that the observed wavelet Tsallis q-entropies of 1/f signals can be modeled by sum-cosh apodizing functions which allocates constant entropies to a set of scaling signals and varying entropies to the rest and that this allocation is controlled by q. The proposed methodology, therefore, differentiates stationary signals from non-stationary ones based on the observed wavelet Tsallis entropies for 1/f signals. Experimental studies using synthesized signals confirm that the proposed method not only achieves satisfactorily classifications but also outperforms current methods proposed in the literature.

  16. Modeling stochasticity in biochemical reaction networks

    International Nuclear Information System (INIS)

    Constantino, P H; Vlysidis, M; Smadbeck, P; Kaznessis, Y N

    2016-01-01

    Small biomolecular systems are inherently stochastic. Indeed, fluctuations of molecular species are substantial in living organisms and may result in significant variation in cellular phenotypes. The chemical master equation (CME) is the most detailed mathematical model that can describe stochastic behaviors. However, because of its complexity the CME has been solved for only few, very small reaction networks. As a result, the contribution of CME-based approaches to biology has been very limited. In this review we discuss the approach of solving CME by a set of differential equations of probability moments, called moment equations. We present different approaches to produce and to solve these equations, emphasizing the use of factorial moments and the zero information entropy closure scheme. We also provide information on the stability analysis of stochastic systems. Finally, we speculate on the utility of CME-based modeling formalisms, especially in the context of synthetic biology efforts. (topical review)

  17. Learning Markov models for stationary system behaviors

    DEFF Research Database (Denmark)

    Chen, Yingke; Mao, Hua; Jaeger, Manfred

    2012-01-01

    to a single long observation sequence, and in these situations existing automatic learning methods cannot be applied. In this paper, we adapt algorithms for learning variable order Markov chains from a single observation sequence of a target system, so that stationary system properties can be verified using......Establishing an accurate model for formal verification of an existing hardware or software system is often a manual process that is both time consuming and resource demanding. In order to ease the model construction phase, methods have recently been proposed for automatically learning accurate...... the learned model. Experiments demonstrate that system properties (formulated as stationary probabilities of LTL formulas) can be reliably identified using the learned model....

  18. Stationary Density Variation Produced by a Standing Plasma Wave

    DEFF Research Database (Denmark)

    Michelsen, Poul; Pécseli, Hans; Juul Rasmussen, Jens

    1977-01-01

    Measurements are presented of a stationary density modulation produced by a standing electron plasma wave. The experimental results are well explained by taking into account the ponderomotive forces on the electrons exerted by the high frequency field.......Measurements are presented of a stationary density modulation produced by a standing electron plasma wave. The experimental results are well explained by taking into account the ponderomotive forces on the electrons exerted by the high frequency field....

  19. Pushing concentration of stationary solar concentrators to the limit.

    Science.gov (United States)

    Winston, Roland; Zhang, Weiya

    2010-04-26

    We give the theoretical limit of concentration allowed by nonimaging optics for stationary solar concentrators after reviewing sun- earth geometry in direction cosine space. We then discuss the design principles that we follow to approach the maximum concentration along with examples including a hollow CPC trough, a dielectric CPC trough, and a 3D dielectric stationary solar concentrator which concentrates sun light four times (4x), eight hours per day year around.

  20. Tightly localized stationary pulses in a multilevel atomic system

    International Nuclear Information System (INIS)

    Liu, Xiong-Jun; Oh, C. H.; Liu, Xin; Liu, Zheng-Xin; Kwek, L. C.

    2007-01-01

    We show that the pulse matching phenomenon can be obtained in the general multilevel system with electromagnetically induced transparency. For this we find a different way to create tightly localized stationary pulses by using counterpropagating pump fields. The present process is a spatial compression of excitation so that it allows us to shape and further intensify the localized stationary pulses, without using standing waves of pump fields or spatially modulated pump fields

  1. Non-stationary Markov chains

    OpenAIRE

    Mallak, Saed

    1996-01-01

    Ankara : Department of Mathematics and Institute of Engineering and Sciences of Bilkent University, 1996. Thesis (Master's) -- Bilkent University, 1996. Includes bibliographical references leaves leaf 29 In thi.s work, we studierl the Ergodicilv of Non-Stationary .Markov chains. We gave several e.xainples with different cases. We proved that given a sec[uence of Markov chains such that the limit of this sec|uence is an Ergodic Markov chain, then the limit of the combination ...

  2. Quasi-adaptive fuzzy heating control of solar buildings

    Energy Technology Data Exchange (ETDEWEB)

    Gouda, M.M. [Faculty of Industrial Education, Cairo (Egypt); Danaher, S. [University of Northumbria, Newcastle upon Tyne, (United Kingdom). School of Engineering; Underwood, C.P. [University of Northumbria, Newcastle upon Tyne (United Kingdom). School of Built Environment and Sustainable Cities Research Institute

    2006-12-15

    Significant progress has been made on maximising passive solar heat gains to building spaces in winter. Control of the space heating in these applications is complicated due to the lagging influence of the useful solar heat gain coupled with the wide range of construction materials and heating system choices. Additionally, and in common with most building control applications, there is a need to develop control solutions that permit simple and transparent set-up and commissioning procedures. This paper addresses the development and testing of a quasi-adaptive fuzzy logic control method that addresses these issues. The controller is developed in two steps. A feed-forward neural network is used to predict the internal air temperature, in which a singular value decomposition (SVD) algorithm is used to remove the highly correlated data from the inputs of the neural network to reduce the network structure. The fuzzy controller is then designed to have two inputs: the first input being the error between the set-point temperature and the internal air temperature and the second the predicted future internal air temperature. The controller was implemented in real-time using a test cell with controlled ventilation and a modulating electric heating system. Results, compared with validated simulations of conventionally controlled heating, confirm that the proposed controller achieves superior tracking and reduced overheating when compared with the conventional method of control. (author)

  3. A comparison of the radiosensitivity of stationary, exponential and G1 phase wild type and repair deficient yeast cultures: supporting evidence for stationary phase yeast cells being in G0

    International Nuclear Information System (INIS)

    Tippins, R.S.; Parry, J.M.

    1982-01-01

    The main points to emerge from this comparison of the radiosensitivity of stationary, exponential and G 1 phase yeast cultures were: (1) In wild type yeast cultures, G 1 cells were the most sensitive to the lethal effects of X-rays, exponential phase cells were the most resistant and stationary phase cells were intermediate in sensitivity. (2) With the excision-repair-defective strain D61-3 (rad 3) stationary phase cells were more resistant than exponential cells with G 1 cells again being most sensitive. (3) The rad 50 gene present in JD50 had a marked effect on the X-ray inactivation response of this strain. In the presence of the defective rad 50 allele, exponential phase cells were as sensitive as G 1 phase cells, with stationary phase cells being more resistant than either. (4) There were marked differences in sensitivity between stationary phase and G 1 phase cells. These differences, along with other physiological differences reported by other workers, lead the authors to suggest that stationary phase cells can be better described as being in G 0 phase, i.e. a stage which is outside the normal mitotic cell cycle of an exponential culture. (author)

  4. Mass formula for quasi-black holes

    International Nuclear Information System (INIS)

    Lemos, Jose P. S.; Zaslavskii, Oleg B.

    2008-01-01

    A quasi-black hole, either nonextremal or extremal, can be broadly defined as the limiting configuration of a body when its boundary approaches the body's quasihorizon. We consider the mass contributions and the mass formula for a static quasi-black hole. The analysis involves careful scrutiny of the surface stresses when the limiting configuration is reached. It is shown that there exists a strict correspondence between the mass formulas for quasi-black holes and pure black holes. This perfect parallelism exists in spite of the difference in derivation and meaning of the formulas in both cases. For extremal quasi-black holes the finite surface stresses give zero contribution to the total mass. This leads to a very special version of Abraham-Lorentz electron in general relativity in which the total mass has pure electromagnetic origin in spite of the presence of bare stresses.

  5. The Pathwise Numerical Approximation of Stationary Solutions of Semilinear Stochastic Evolution Equations

    International Nuclear Information System (INIS)

    Caraballo, T.; Kloeden, P.E.

    2006-01-01

    Under a one-sided dissipative Lipschitz condition on its drift, a stochastic evolution equation with additive noise of the reaction-diffusion type is shown to have a unique stochastic stationary solution which pathwise attracts all other solutions. A similar situation holds for each Galerkin approximation and each implicit Euler scheme applied to these Galerkin approximations. Moreover, the stationary solution of the Euler scheme converges pathwise to that of the Galerkin system as the stepsize tends to zero and the stationary solutions of the Galerkin systems converge pathwise to that of the evolution equation as the dimension increases. The analysis is carried out on random partial and ordinary differential equations obtained from their stochastic counterparts by subtraction of appropriate Ornstein-Uhlenbeck stationary solutions

  6. Laser engineered net shaping of quasi-continuous network microstructural TiB reinforced titanium matrix bulk composites: Microstructure and wear performance

    Science.gov (United States)

    Hu, Yingbin; Ning, Fuda; Wang, Hui; Cong, Weilong; Zhao, Bo

    2018-02-01

    Titanium (Ti) and its alloys have been successfully applied to the aeronautical and biomedical industries. However, their poor tribological properties restrict their fields of applications under severe wear conditions. Facing to these challenges, this study investigated TiB reinforced Ti matrix composites (TiB-TMCs), fabricated by in-situ laser engineered net shaping (LENS) process, through analyzing parts quality, microstructure formation mechanisms, microstructure characterizations, and workpiece wear performance. At high B content areas (original B particle locations), reaction between Ti and B particles took place, generating flower-like microstructure. At low B content areas, eutectic TiB nanofibers contacted with each other with the formation of crosslinking microstructure. The crosslinking microstructural TiB aggregated and connected at the boundaries of Ti grains, forming a three-dimensional quasi-continuous network microstructure. The results show that compared with commercially pure Ti bulk parts, the TiB-TMCs exhibited superior wear performance (i.e. indentation wear resistance and friction wear resistance) due to the present of TiB reinforcement and the innovative microstructures formed inside TiB-TMCs. In addition, the qualities of the fabricated parts were improved with fewer interior defects by optimizing laser power, thus rendering better wear performance.

  7. Nonparametric estimation of the stationary M/G/1 workload distribution function

    DEFF Research Database (Denmark)

    Hansen, Martin Bøgsted

    2005-01-01

    In this paper it is demonstrated how a nonparametric estimator of the stationary workload distribution function of the M/G/1-queue can be obtained by systematic sampling the workload process. Weak convergence results and bootstrap methods for empirical distribution functions for stationary associ...

  8. The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase.

    Science.gov (United States)

    Gagen, Emma J; Yoshinaga, Marcos Y; Garcia Prado, Franka; Hinrichs, Kai-Uwe; Thomm, Michael

    2016-01-01

    The majority of cells in nature probably exist in a stationary-phase-like state, due to nutrient limitation in most environments. Studies on bacteria and yeast reveal morphological and physiological changes throughout the stationary phase, which lead to an increased ability to survive prolonged nutrient limitation. However, there is little information on archaeal stationary phase responses. We investigated protein- and lipid-level changes in Thermococcus kodakarensis with extended time in the stationary phase. Adaptations to time in stationary phase included increased proportion of membrane lipids with a tetraether backbone, synthesis of proteins that ensure translational fidelity, specific regulation of ABC transporters (upregulation of some, downregulation of others), and upregulation of proteins involved in coenzyme production. Given that the biological mechanism of tetraether synthesis is unknown, we also considered whether any of the protein-level changes in T. kodakarensis might shed light on the production of tetraether lipids across the same period. A putative carbon-nitrogen hydrolase, a TldE (a protease in Escherichia coli) homologue, and a membrane bound hydrogenase complex subunit were candidates for possible involvement in tetraether-related reactions, while upregulation of adenosylcobalamin synthesis proteins might lend support to a possible radical mechanism as a trigger for tetraether synthesis.

  9. The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase

    Directory of Open Access Journals (Sweden)

    Emma J. Gagen

    2016-01-01

    Full Text Available The majority of cells in nature probably exist in a stationary-phase-like state, due to nutrient limitation in most environments. Studies on bacteria and yeast reveal morphological and physiological changes throughout the stationary phase, which lead to an increased ability to survive prolonged nutrient limitation. However, there is little information on archaeal stationary phase responses. We investigated protein- and lipid-level changes in Thermococcus kodakarensis with extended time in the stationary phase. Adaptations to time in stationary phase included increased proportion of membrane lipids with a tetraether backbone, synthesis of proteins that ensure translational fidelity, specific regulation of ABC transporters (upregulation of some, downregulation of others, and upregulation of proteins involved in coenzyme production. Given that the biological mechanism of tetraether synthesis is unknown, we also considered whether any of the protein-level changes in T. kodakarensis might shed light on the production of tetraether lipids across the same period. A putative carbon-nitrogen hydrolase, a TldE (a protease in Escherichia coli homologue, and a membrane bound hydrogenase complex subunit were candidates for possible involvement in tetraether-related reactions, while upregulation of adenosylcobalamin synthesis proteins might lend support to a possible radical mechanism as a trigger for tetraether synthesis.

  10. Quasi-exact solutions of nonlinear differential equations

    OpenAIRE

    Kudryashov, Nikolay A.; Kochanov, Mark B.

    2014-01-01

    The concept of quasi-exact solutions of nonlinear differential equations is introduced. Quasi-exact solution expands the idea of exact solution for additional values of parameters of differential equation. These solutions are approximate solutions of nonlinear differential equations but they are close to exact solutions. Quasi-exact solutions of the the Kuramoto--Sivashinsky, the Korteweg--de Vries--Burgers and the Kawahara equations are founded.

  11. Similarity flows between a rotating and a stationary disk

    International Nuclear Information System (INIS)

    Buchmann, J.H.; Qassim, R.Y.

    1981-07-01

    The radial distribution of fluid pressure on a stationary disk coaxial with a rotating disk is determined experimentally for various inter-disc spacings. The results show that similarity flows are only possible for both small and large values of this distance. In the former case, the flow faraway from the stationary disk appears to be that suggested by Batchelor, while in the latter case, the flow turns out to be in accordance with the assumption of Stewartson. (Author) [pt

  12. FINITE MARKOV CHAINS IN THE MODEL REPRESENTATION OF THE HUMAN OPERATOR ACTIVITY IN QUASI-FUNCTIONAL ENVIRONMENT

    Directory of Open Access Journals (Sweden)

    M. V. Serzhantova

    2016-05-01

    Full Text Available Subject of Research. We analyze the problems of finite Markov chains apparatus application for simulating a human operator activity in the quasi-static functional environment. It is shown that the functional environment stochastic nature is generated by a factor of interval character of human operator properties. Method. The problem is solved in the class of regular (recurrent finite Markov chains with three states of the human operator: with a favorable, median and unfavorable combination of the values of mathematical model parameters of the human operator in a quasi-static functional environment. The finite Markov chain is designed taking into account the factors of human operator tiredness and interval character of parameters of the model representation of his properties. The device is based on the usage of mathematical approximation of the standard curve of the human operator activity performance during work shift. The standard curve of the human operator activity performance is based on the extensive research experience of functional activity of the human operator with the help of photos of the day, his action timing and ergonomic generalizations. Main Results. The apparatus of regular finite Markov chains gave the possibility to evaluate correctly the human operator activity performance in a quasi-static functional environment with the use of the main information component of these chains as a vector of final probabilities. In addition, we managed to build an algorithmic basis for estimating the stationary time (time study for transit of human operator from arbitrary initial functional state into a state corresponding to a vector of final probabilities for a used chain after it reaches the final state based on the analysis of the eigenvalues spectrum of the matrix of transition probabilities for a regular (recurrent finite Markov chain. Practical Relevance. Obtained theoretical results are confirmed by illustrative examples, which

  13. On Maximal Hard-Core Thinnings of Stationary Particle Processes

    Science.gov (United States)

    Hirsch, Christian; Last, Günter

    2018-02-01

    The present paper studies existence and distributional uniqueness of subclasses of stationary hard-core particle systems arising as thinnings of stationary particle processes. These subclasses are defined by natural maximality criteria. We investigate two specific criteria, one related to the intensity of the hard-core particle process, the other one being a local optimality criterion on the level of realizations. In fact, the criteria are equivalent under suitable moment conditions. We show that stationary hard-core thinnings satisfying such criteria exist and are frequently distributionally unique. More precisely, distributional uniqueness holds in subcritical and barely supercritical regimes of continuum percolation. Additionally, based on the analysis of a specific example, we argue that fluctuations in grain sizes can play an important role for establishing distributional uniqueness at high intensities. Finally, we provide a family of algorithmically constructible approximations whose volume fractions are arbitrarily close to the maximum.

  14. A Stationary Reference Frame Grid Synchronization System for Three-Phase Grid-Connected Power Converters Under Adverse Grid Conditions

    DEFF Research Database (Denmark)

    Rodríguez, P.; Luna, A.; Muñoz-Aguilar, R. S.

    2012-01-01

    synchronization method for three-phase three-wire networks, namely dual second-order generalized integrator (SOGI) frequency-locked loop. The method is based on two adaptive filters, implemented by using a SOGI on the stationary αβ reference frame, and it is able to perform an excellent estimation......Grid synchronization algorithms are of great importance in the control of grid-connected power converters, as fast and accurate detection of the grid voltage parameters is crucial in order to implement stable control strategies under generic grid conditions. This paper presents a new grid...

  15. Stabilization of heavy oil-water emulsions using a bio/chemical emulsifier mixture

    Energy Technology Data Exchange (ETDEWEB)

    Farahbakhsh, A.; Taghizadeh, M.; Movagharnejad, K. [Chemical Engineering Department, Babol University of Technology, Babol (Iran, Islamic Republic of); Yakhchali, B. [National Institute of Genetic Engineering and Biotechnology, Tehran (Iran, Islamic Republic of)

    2011-11-15

    In this study, the viscosity reduction of heavy oil has been investigated through the formation of oil-water emulsion using a bio/chemical emulsifier mixture. Four bioemulsifiers from indigenous Rhodococcus ergthropolis and Bacillus licheniformis strains were used to stabilize a highly-viscous oil-in-water emulsion. The Taguchi method with an L{sub 9} orthogonal array design was used to investigate the effect of various control factors on the formation of the oil/water emulsions. An emulsion with lowest viscosity was formed using ACO4 strain. The substantial stability of the oil-in-water emulsion allows the heavy oil to be transported practically over long distances or remain stationary for a considerable period of time prior to utilization. As the result of Taguchi analysis, the temperature and concentration of the emulsifier had a significant influence on viscosity reduction of the emulsion. (Copyright copyright 2011 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  16. Only adding stationary storage to vaccine supply chains may create and worsen transport bottlenecks.

    Science.gov (United States)

    Haidari, Leila A; Connor, Diana L; Wateska, Angela R; Brown, Shawn T; Mueller, Leslie E; Norman, Bryan A; Schmitz, Michelle M; Paul, Proma; Rajgopal, Jayant; Welling, Joel S; Leonard, Jim; Claypool, Erin G; Weng, Yu-Ting; Chen, Sheng-I; Lee, Bruce Y

    2013-01-01

    Although vaccine supply chains in many countries require additional stationary storage and transport capacity to meet current and future needs, international donors tend to donate stationary storage devices far more often than transport equipment. To investigate the impact of only adding stationary storage equipment on the capacity requirements of transport devices and vehicles, we used HERMES (Highly Extensible Resource for Modeling Supply Chains) to construct a discrete event simulation model of the Niger vaccine supply chain. We measured the transport capacity requirement for each mode of transport used in the Niger vaccine cold chain, both before and after adding cold rooms and refrigerators to relieve all stationary storage constraints in the system. With the addition of necessary stationary storage, the average transport capacity requirement increased from 88% to 144% for cold trucks, from 101% to 197% for pickup trucks, and from 366% to 420% for vaccine carriers. Therefore, adding stationary storage alone may worsen or create new transport bottlenecks as more vaccines flow through the system, preventing many vaccines from reaching their target populations. Dynamic modeling can reveal such relationships between stationary storage capacity and transport constraints.

  17. Enantioselective potential of polysaccharide-based chiral stationary phases in supercritical fluid chromatography.

    Science.gov (United States)

    Kucerova, Gabriela; Kalikova, Kveta; Tesarova, Eva

    2017-06-01

    The enantioselective potential of two polysaccharide-based chiral stationary phases for analysis of chiral structurally diverse biologically active compounds was evaluated in supercritical fluid chromatography using a set of 52 analytes. The chiral selectors immobilized on 2.5 μm silica particles were tris-(3,5-dimethylphenylcarmabate) derivatives of cellulose or amylose. The influence of the polysaccharide backbone, different organic modifiers, and different mobile phase additives on retention and enantioseparation was monitored. Conditions for fast baseline enantioseparation were found for the majority of the compounds. The success rate of baseline and partial enantioseparation with cellulose-based chiral stationary phase was 51.9% and 15.4%, respectively. Using amylose-based chiral stationary phase we obtained 76.9% of baseline enantioseparations and 9.6% of partial enantioseparations of the tested compounds. The best results on cellulose-based chiral stationary phase were achieved particularly with propane-2-ol and a mixture of isopropylamine and trifluoroacetic acid as organic modifier and additive to CO 2 , respectively. Methanol and basic additive isopropylamine were preferred on amylose-based chiral stationary phase. The complementary enantioselectivity of the cellulose- and amylose-based chiral stationary phases allows separation of the majority of the tested structurally different compounds. Separation systems were found to be directly applicable for analyses of biologically active compounds of interest. © 2017 Wiley Periodicals, Inc.

  18. Power variation for Gaussian processes with stationary increments

    DEFF Research Database (Denmark)

    Barndorff-Nielsen, Ole Eiler; Corcuera, J.M.; Podolskij, Mark

    2009-01-01

    We develop the asymptotic theory for the realised power variation of the processes X=•G, where G is a Gaussian process with stationary increments. More specifically, under some mild assumptions on the variance function of the increments of G and certain regularity conditions on the path of the pr......We develop the asymptotic theory for the realised power variation of the processes X=•G, where G is a Gaussian process with stationary increments. More specifically, under some mild assumptions on the variance function of the increments of G and certain regularity conditions on the path...... a chaos representation....

  19. Income dynamics with a stationary double Pareto distribution.

    Science.gov (United States)

    Toda, Alexis Akira

    2011-04-01

    Once controlled for the trend, the distribution of personal income appears to be double Pareto, a distribution that obeys the power law exactly in both the upper and the lower tails. I propose a model of income dynamics with a stationary distribution that is consistent with this fact. Using US male wage data for 1970-1993, I estimate the power law exponent in two ways--(i) from each cross section, assuming that the distribution has converged to the stationary distribution, and (ii) from a panel directly estimating the parameters of the income dynamics model--and obtain the same value of 8.4.

  20. Quasi-local mass in the covariant Newtonian spacetime

    International Nuclear Information System (INIS)

    Wu, Y-H; Wang, C-H

    2008-01-01

    In general relativity, quasi-local energy-momentum expressions have been constructed from various formulae. However, the Newtonian theory of gravity gives a well-known and a unique quasi-local mass expression (surface integration). Since geometrical formulation of Newtonian gravity has been established in the covariant Newtonian spacetime, it provides a covariant approximation from relativistic to Newtonian theories. By using this approximation, we calculate the Komar integral, the Brown-York quasi-local energy and the Dougan-Mason quasi-local mass in the covariant Newtonian spacetime. It turns out that the Komar integral naturally gives the Newtonian quasi-local mass expression; however, further conditions (spherical symmetry) need to be made for Brown-York and Dougan-Mason expressions

  1. Network of vascular diseases, death and biochemical characteristics in a set of 4,197 patients with type 1 diabetes (The FinnDiane Study

    Directory of Open Access Journals (Sweden)

    Wadén Johan

    2009-10-01

    Full Text Available Background Cardiovascular disease is the main cause of premature death in patients with type 1 diabetes. Patients with diabetic kidney disease have an increased risk of heart attack or stroke. Accurate knowledge of the complex inter-dependencies between the risk factors is critical for pinpointing the best targets for research and treatment. Therefore, the aim of this study was to describe the association patterns between clinical and biochemical features of diabetic complications. Methods Medical records and serum and urine samples of 4,197 patients with type 1 diabetes were collected from health care centers in Finland. At baseline, the mean diabetes duration was 22 years, 52% were male, 23% had kidney disease (urine albumin excretion over 300 mg/24 h or end-stage renal disease and 8% had a history of macrovascular events. All-cause mortality was evaluated after an average of 6.5 years of follow-up (25,714 patient years. The dataset comprised 28 clinical and 25 biochemical variables that were regarded as the nodes of a network to assess their mutual relationships. Results The networks contained cliques that were densely inter-connected (r > 0.6, including cliques for high-density lipoprotein (HDL markers, for triglycerides and cholesterol, for urinary excretion and for indices of body mass. The links between the cliques showed biologically relevant interactions: an inverse relationship between HDL cholesterol and the triglyceride clique (r P -16, a connection between triglycerides and body mass via C-reactive protein (r > 0.3, P -16 and intermediate-density cholesterol as the connector between lipoprotein metabolism and albuminuria (r > 0.3, P -16. Aging and macrovascular disease were linked to death via working ability and retinopathy. Diabetic kidney disease, serum creatinine and potassium, retinopathy and blood pressure were inter-connected. Blood pressure correlations indicated accelerated vascular aging in individuals with kidney disease

  2. Quasi-Experimental Designs for Causal Inference

    Science.gov (United States)

    Kim, Yongnam; Steiner, Peter

    2016-01-01

    When randomized experiments are infeasible, quasi-experimental designs can be exploited to evaluate causal treatment effects. The strongest quasi-experimental designs for causal inference are regression discontinuity designs, instrumental variable designs, matching and propensity score designs, and comparative interrupted time series designs. This…

  3. Data fusion concept in multispectral system for perimeter protection of stationary and moving objects

    Science.gov (United States)

    Ciurapiński, Wieslaw; Dulski, Rafal; Kastek, Mariusz; Szustakowski, Mieczyslaw; Bieszczad, Grzegorz; Życzkowski, Marek; Trzaskawka, Piotr; Piszczek, Marek

    2009-09-01

    The paper presents the concept of multispectral protection system for perimeter protection for stationary and moving objects. The system consists of active ground radar, thermal and visible cameras. The radar allows the system to locate potential intruders and to control an observation area for system cameras. The multisensor construction of the system ensures significant improvement of detection probability of intruder and reduction of false alarms. A final decision from system is worked out using image data. The method of data fusion used in the system has been presented. The system is working under control of FLIR Nexus system. The Nexus offers complete technology and components to create network-based, high-end integrated systems for security and surveillance applications. Based on unique "plug and play" architecture, system provides unmatched flexibility and simplistic integration of sensors and devices in TCP/IP networks. Using a graphical user interface it is possible to control sensors and monitor streaming video and other data over the network, visualize the results of data fusion process and obtain detailed information about detected intruders over a digital map. System provides high-level applications and operator workload reduction with features such as sensor to sensor cueing from detection devices, automatic e-mail notification and alarm triggering.

  4. Photonic quasi-crystal terahertz lasers

    Science.gov (United States)

    Vitiello, Miriam Serena; Nobile, Michele; Ronzani, Alberto; Tredicucci, Alessandro; Castellano, Fabrizio; Talora, Valerio; Li, Lianhe; Linfield, Edmund H.; Davies, A. Giles

    2014-12-01

    Quasi-crystal structures do not present a full spatial periodicity but are nevertheless constructed starting from deterministic generation rules. When made of different dielectric materials, they often possess fascinating optical properties, which lie between those of periodic photonic crystals and those of a random arrangement of scatterers. Indeed, they can support extended band-like states with pseudogaps in the energy spectrum, but lacking translational invariance, they also intrinsically feature a pattern of ‘defects’, which can give rise to critically localized modes confined in space, similar to Anderson modes in random structures. If used as laser resonators, photonic quasi-crystals open up design possibilities that are simply not possible in a conventional periodic photonic crystal. In this letter, we exploit the concept of a 2D photonic quasi crystal in an electrically injected laser; specifically, we pattern the top surface of a terahertz quantum-cascade laser with a Penrose tiling of pentagonal rotational symmetry, reaching 0.1-0.2% wall-plug efficiencies and 65 mW peak output powers with characteristic surface-emitting conical beam profiles, result of the rich quasi-crystal Fourier spectrum.

  5. [Sampling methods for PM2.5 from stationary sources: a review].

    Science.gov (United States)

    Jiang, Jing-Kun; Deng, Jian-Guo; Li, Zhen; Li, Xing-Hua; Duan, Lei; Hao, Ji-Ming

    2014-05-01

    The new China national ambient air quality standard has been published in 2012 and will be implemented in 2016. To meet the requirements in this new standard, monitoring and controlling PM2,,5 emission from stationary sources are very important. However, so far there is no national standard method on sampling PM2.5 from stationary sources. Different sampling methods for PM2.5 from stationary sources and relevant international standards were reviewed in this study. It includes the methods for PM2.5 sampling in flue gas and the methods for PM2.5 sampling after dilution. Both advantages and disadvantages of these sampling methods were discussed. For environmental management, the method for PM2.5 sampling in flue gas such as impactor and virtual impactor was suggested as a standard to determine filterable PM2.5. To evaluate environmental and health effects of PM2.5 from stationary sources, standard dilution method for sampling of total PM2.5 should be established.

  6. Segmented slant hole collimator for stationary cardiac SPECT: Monte Carlo simulations.

    Science.gov (United States)

    Mao, Yanfei; Yu, Zhicong; Zeng, Gengsheng L

    2015-09-01

    This work is a preliminary study of a stationary cardiac SPECT system. The goal of this research is to propose a stationary cardiac SPECT system using segmented slant-hole collimators and to perform computer simulations to test the feasibility. Compared to the rotational SPECT, a stationary system has a benefit of acquiring temporally consistent projections. The most challenging issue in building a stationary system is to provide sufficient projection view-angles. A GATE (GEANT4 application for tomographic emission) Monte Carlo model was developed to simulate a two-detector stationary cardiac SPECT that uses segmented slant-hole collimators. Each detector contains seven segmented slant-hole sections that slant to a common volume at the rotation center. Consequently, 14 view-angles over 180° were acquired without any gantry rotation. The NCAT phantom was used for data generation and a tailored maximum-likelihood expectation-maximization algorithm was used for image reconstruction. Effects of limited number of view-angles and data truncation were carefully evaluated in the paper. Simulation results indicated that the proposed segmented slant-hole stationary cardiac SPECT system is able to acquire sufficient data for cardiac imaging without a loss of image quality, even when the uptakes in the liver and kidneys are high. Seven views are acquired simultaneously at each detector, leading to 5-fold sensitivity gain over the conventional dual-head system at the same total acquisition time, which in turn increases the signal-to-noise ratio by 19%. The segmented slant-hole SPECT system also showed a good performance in lesion detection. In our prototype system, a short hole-length was used to reduce the dead zone between neighboring collimator segments. The measured sensitivity gain is about 17-fold over the conventional dual-head system. The gate Monte Carlo simulations confirm the feasibility of the proposed stationary cardiac SPECT system with segmented slant

  7. Segmented slant hole collimator for stationary cardiac SPECT: Monte Carlo simulations

    Energy Technology Data Exchange (ETDEWEB)

    Mao, Yanfei, E-mail: ymao@ucair.med.utah.edu [Department of Radiology, Utah Center for Advanced Imaging Research (UCAIR), University of Utah, Salt Lake City, Utah 84108 and Department of Bioengineering, University of Utah, Salt Lake City, Utah 84112 (United States); Yu, Zhicong [Department of Radiology, Mayo Clinic, Rochester, Minnesota 55905 (United States); Zeng, Gengsheng L. [Department of Radiology, Utah Center for Advanced Imaging Research (UCAIR), University of Utah, Salt Lake City, Utah 84108 and Department of Engineering, Weber State University, Ogden, Utah 84408 (United States)

    2015-09-15

    Purpose: This work is a preliminary study of a stationary cardiac SPECT system. The goal of this research is to propose a stationary cardiac SPECT system using segmented slant-hole collimators and to perform computer simulations to test the feasibility. Compared to the rotational SPECT, a stationary system has a benefit of acquiring temporally consistent projections. The most challenging issue in building a stationary system is to provide sufficient projection view-angles. Methods: A GATE (GEANT4 application for tomographic emission) Monte Carlo model was developed to simulate a two-detector stationary cardiac SPECT that uses segmented slant-hole collimators. Each detector contains seven segmented slant-hole sections that slant to a common volume at the rotation center. Consequently, 14 view-angles over 180° were acquired without any gantry rotation. The NCAT phantom was used for data generation and a tailored maximum-likelihood expectation-maximization algorithm was used for image reconstruction. Effects of limited number of view-angles and data truncation were carefully evaluated in the paper. Results: Simulation results indicated that the proposed segmented slant-hole stationary cardiac SPECT system is able to acquire sufficient data for cardiac imaging without a loss of image quality, even when the uptakes in the liver and kidneys are high. Seven views are acquired simultaneously at each detector, leading to 5-fold sensitivity gain over the conventional dual-head system at the same total acquisition time, which in turn increases the signal-to-noise ratio by 19%. The segmented slant-hole SPECT system also showed a good performance in lesion detection. In our prototype system, a short hole-length was used to reduce the dead zone between neighboring collimator segments. The measured sensitivity gain is about 17-fold over the conventional dual-head system. Conclusions: The GATE Monte Carlo simulations confirm the feasibility of the proposed stationary cardiac

  8. Detection of Multiple Stationary Humans Using UWB MIMO Radar

    Directory of Open Access Journals (Sweden)

    Fulai Liang

    2016-11-01

    Full Text Available Remarkable progress has been achieved in the detection of single stationary human. However, restricted by the mutual interference of multiple humans (e.g., strong sidelobes of the torsos and the shadow effect, detection and localization of the multiple stationary humans remains a huge challenge. In this paper, ultra-wideband (UWB multiple-input and multiple-output (MIMO radar is exploited to improve the detection performance of multiple stationary humans for its multiple sight angles and high-resolution two-dimensional imaging capacity. A signal model of the vital sign considering both bi-static angles and attitude angle of the human body is firstly developed, and then a novel detection method is proposed to detect and localize multiple stationary humans. In this method, preprocessing is firstly implemented to improve the signal-to-noise ratio (SNR of the vital signs, and then a vital-sign-enhanced imaging algorithm is presented to suppress the environmental clutters and mutual affection of multiple humans. Finally, an automatic detection algorithm including constant false alarm rate (CFAR, morphological filtering and clustering is implemented to improve the detection performance of weak human targets affected by heavy clutters and shadow effect. The simulation and experimental results show that the proposed method can get a high-quality image of multiple humans and we can use it to discriminate and localize multiple adjacent human targets behind brick walls.

  9. Danish emission inventories for stationary combustion plants

    DEFF Research Database (Denmark)

    Nielsen, M.; Illerup, J. B.

    Emission inventories for stationary combustion plants are presented and the methodologies and assumptions used for the inventories are described. The pollutants considered are: SO2, NOx, NMVOC, CH4, CO, CO2, N2O, particulate matter, heavy metals, dioxins and PAH. Since 1990 the fuel consumption...... in stationary combustion has increased by 12% - the fossil fuel consumption however only by 6%. Despite the increased fuel consumption the emission of several pollutants have decreased due to the improved flue gas cleaning technology, improved burner technology and the change of fuel type used. A considerable...... plants. The emission of PAH increased as a result of the increased combustion of wood in residential boilers and stoves. Uncertainties for the emissions and trends have been estimated....

  10. Danish emission inventories for stationary combustion plants

    DEFF Research Database (Denmark)

    Nielsen, M.; Illerup, J. B.

    Emission inventories for stationary combustion plants are presented and the methodologies and assumptions used for the inventories are described. The pollutants considered are SO2, NOX, NMVOC, CH4, CO, CO2, N2O, particulate matter, heavy metals, dioxins and PAH. Since 1990 the fuel consumption...... in stationary combustion has increased by 14% - the fossil fuel consumption however only by 8%. Despite the increased fuel consumption the emission of several pollutants has decreased due to the improved flue gas cleaning technology, improved burner technology and the change of fuel type used. A considerable...... plants. The emission of PAH increased as a result of the increased combustion of wood in residential boilers and stoves. Uncertainties for the emissions and trends have been estimated...

  11. Stationary distribution and ergodicity of a stochastic food-chain model with Lévy jumps

    Science.gov (United States)

    Yu, Jingyi; Liu, Meng

    2017-09-01

    In this paper, a three-species stochastic food-chain model with Lévy jumps is proposed and analyzed. Sharp sufficient criteria for the existence and uniqueness of an ergodic stationary distribution are established. The effects of Lévy jumps on the existence of the stationary distribution are revealed: in some cases, the Lévy jumps could make the stationary distribution appear, while in some cases, the Lévy jumps could make the stationary distribution disappear. Some numerical simulations are introduced to illustrate the theoretical results.

  12. Asymptotic kinetic theory of magnetized plasmas: quasi-particle concept

    International Nuclear Information System (INIS)

    Sosenko, P.P.; Zagorodny, A.H.

    2004-01-01

    The asymptotic kinetic theory of magnetized plasmas is elaborated within the context of general statistical approach and asymptotic methods, developed by M. Krylov and M. Bohol'ubov, for linear and non-linear dynamic systems with a rapidly rotating phase. The quasi-particles are introduced already on the microscopic level. Asymptotic expansions enable to close the description for slow processes, and to relate consistently particles and guiding centres to quasi-particles. The kinetic equation for quasi-particles is derived. It makes a basis for the reduced description of slow collective phenomena in the medium. The kinetic equation for quasi-particles takes into account self-consistent interaction fields, quasi-particle collisions and collective-fluctuation-induced relaxation of quasi-particle distribution function. The relationships between the distribution functions for particles, guiding centres and quasi-particles are derived taking into account fluctuations, which can be especially important in turbulent states. In this way macroscopic (statistical) particle properties can be obtained from those of quasi-particles in the general case of non-equilibrium. (authors)

  13. Stone Stability under Stationary Nonuniform Flows

    NARCIS (Netherlands)

    Steenstra, Remco; Hofland, B.; Paarlberg, Andries; Smale, Alfons; Huthoff, Fredrik; Uijttewaal, W.S.J.

    2016-01-01

    A stability parameter for rock in bed protections under nonuniform stationary flow is derived. The influence of the mean flow velocity, turbulence, and mean acceleration of the flow are included explicitly in the parameter. The relatively new notion of explicitly incorporating the mean acceleration

  14. Relativistic elasticity of stationary fluid branes

    DEFF Research Database (Denmark)

    Armas, J.; Obers, N.A.

    2013-01-01

    under certain conditions that a given stationary fluid configuration living on a dynamical surface of vanishing thickness and satisfying locally the first law of thermodynamics will behave like an elastic brane when the surface is subject to small deformations. These results, which are independent...

  15. On characterizations of quasi-metric completeness

    Energy Technology Data Exchange (ETDEWEB)

    Dag, H.; Romaguera, S.; Tirado, P.

    2017-07-01

    Hu proved in [4] that a metric space (X, d) is complete if and only if for any closed subspace C of (X, d), every Banach contraction on C has fixed point. Since then several authors have investigated the problem of characterizing the metric completeness by means of fixed point theorems. Recently this problem has been studied in the more general context of quasi-metric spaces for different notions of completeness. Here we present a characterization of a kind of completeness for quasi-metric spaces by means of a quasi-metric versions of Hu’s theorem. (Author)

  16. Do Ethnic Enclaves Impede Immigrants’ Integration? Evidence from a Quasi-Experimental Social-Interaction Approach

    OpenAIRE

    Danzer, A. M.; Yaman, F.

    2013-01-01

    It is widely debated whether immigrants who live among co-ethnics are less willing to integrate into the host society. Exploiting the quasi-experimental guest worker placement across German regions during the 1960/70s as well as information on immigrants’ inter-ethnic contact networks and social activities, we are able to identify the causal effect of ethnic concentration on social integration. The exogenous placement of immigrants "switches off" observable and unobservable differences in t...

  17. Stationary measure in the multiverse

    International Nuclear Information System (INIS)

    Linde, Andrei; Vanchurin, Vitaly; Winitzki, Sergei

    2009-01-01

    We study the recently proposed ''stationary measure'' in the context of the string landscape scenario. We show that it suffers neither from the ''Boltzmann brain'' problem nor from the ''youngness'' paradox that makes some other measures predict a high CMB temperature at present. We also demonstrate a good performance of this measure in predicting the results of local experiments, such as proton decay

  18. High-frequency stock linkage and multi-dimensional stationary processes

    Science.gov (United States)

    Wang, Xi; Bao, Si; Chen, Jingchao

    2017-02-01

    In recent years, China's stock market has experienced dramatic fluctuations; in particular, in the second half of 2014 and 2015, the market rose sharply and fell quickly. Many classical financial phenomena, such as stock plate linkage, appeared repeatedly during this period. In general, these phenomena have usually been studied using daily-level data or minute-level data. Our paper focuses on the linkage phenomenon in Chinese stock 5-second-level data during this extremely volatile period. The method used to select the linkage points and the arbitrage strategy are both based on multi-dimensional stationary processes. A new program method for testing the multi-dimensional stationary process is proposed in our paper, and the detailed program is presented in the paper's appendix. Because of the existence of the stationary process, the strategy's logarithmic cumulative average return will converge under the condition of the strong ergodic theorem, and this ensures the effectiveness of the stocks' linkage points and the more stable statistical arbitrage strategy.

  19. Quasi-particles at finite chemical potential

    International Nuclear Information System (INIS)

    Gardim, F. G.; Steffens, F. M.

    2010-01-01

    We present in this work the thermodynamic consistent quasi-particle model at finite chemical potential, to describe the Quark Gluon Plasma composed of two light quarks and gluons. The quasi-particle general solution will be discussed, and comparison with perturbative QCD and lattice data will be shown.

  20. On Judicial and Quasi-Judicial Independence

    NARCIS (Netherlands)

    Comtois, Suzanne; de Graaf, K.J.

    2013-01-01

    'Principles of judicial and quasi-judicial independence are fundamental to all democracies and yet, the notion of independence is still elusive. What is judicial and quasi-judicial independence and why is it important? From whom and what are the judiciary and other adjudicators to be independent? Is

  1. Resistance and Security Index of Networks: Structural Information Perspective of Network Security.

    Science.gov (United States)

    Li, Angsheng; Hu, Qifu; Liu, Jun; Pan, Yicheng

    2016-06-03

    Recently, Li and Pan defined the metric of the K-dimensional structure entropy of a structured noisy dataset G to be the information that controls the formation of the K-dimensional structure of G that is evolved by the rules, order and laws of G, excluding the random variations that occur in G. Here, we propose the notion of resistance of networks based on the one- and two-dimensional structural information of graphs. Given a graph G, we define the resistance of G, written , as the greatest overall number of bits required to determine the code of the module that is accessible via random walks with stationary distribution in G, from which the random walks cannot escape. We show that the resistance of networks follows the resistance law of networks, that is, for a network G, the resistance of G is , where and are the one- and two-dimensional structure entropies of G, respectively. Based on the resistance law, we define the security index of a network G to be the normalised resistance of G, that is, . We show that the resistance and security index are both well-defined measures for the security of the networks.

  2. Resistance and Security Index of Networks: Structural Information Perspective of Network Security

    Science.gov (United States)

    Li, Angsheng; Hu, Qifu; Liu, Jun; Pan, Yicheng

    2016-01-01

    Recently, Li and Pan defined the metric of the K-dimensional structure entropy of a structured noisy dataset G to be the information that controls the formation of the K-dimensional structure of G that is evolved by the rules, order and laws of G, excluding the random variations that occur in G. Here, we propose the notion of resistance of networks based on the one- and two-dimensional structural information of graphs. Given a graph G, we define the resistance of G, written , as the greatest overall number of bits required to determine the code of the module that is accessible via random walks with stationary distribution in G, from which the random walks cannot escape. We show that the resistance of networks follows the resistance law of networks, that is, for a network G, the resistance of G is , where and are the one- and two-dimensional structure entropies of G, respectively. Based on the resistance law, we define the security index of a network G to be the normalised resistance of G, that is, . We show that the resistance and security index are both well-defined measures for the security of the networks. PMID:27255783

  3. Resistance and Security Index of Networks: Structural Information Perspective of Network Security

    Science.gov (United States)

    Li, Angsheng; Hu, Qifu; Liu, Jun; Pan, Yicheng

    2016-06-01

    Recently, Li and Pan defined the metric of the K-dimensional structure entropy of a structured noisy dataset G to be the information that controls the formation of the K-dimensional structure of G that is evolved by the rules, order and laws of G, excluding the random variations that occur in G. Here, we propose the notion of resistance of networks based on the one- and two-dimensional structural information of graphs. Given a graph G, we define the resistance of G, written , as the greatest overall number of bits required to determine the code of the module that is accessible via random walks with stationary distribution in G, from which the random walks cannot escape. We show that the resistance of networks follows the resistance law of networks, that is, for a network G, the resistance of G is , where and are the one- and two-dimensional structure entropies of G, respectively. Based on the resistance law, we define the security index of a network G to be the normalised resistance of G, that is, . We show that the resistance and security index are both well-defined measures for the security of the networks.

  4. On the non-stationary generalized Langevin equation

    Science.gov (United States)

    Meyer, Hugues; Voigtmann, Thomas; Schilling, Tanja

    2017-12-01

    In molecular dynamics simulations and single molecule experiments, observables are usually measured along dynamic trajectories and then averaged over an ensemble ("bundle") of trajectories. Under stationary conditions, the time-evolution of such averages is described by the generalized Langevin equation. By contrast, if the dynamics is not stationary, it is not a priori clear which form the equation of motion for an averaged observable has. We employ the formalism of time-dependent projection operator techniques to derive the equation of motion for a non-equilibrium trajectory-averaged observable as well as for its non-stationary auto-correlation function. The equation is similar in structure to the generalized Langevin equation but exhibits a time-dependent memory kernel as well as a fluctuating force that implicitly depends on the initial conditions of the process. We also derive a relation between this memory kernel and the autocorrelation function of the fluctuating force that has a structure similar to a fluctuation-dissipation relation. In addition, we show how the choice of the projection operator allows us to relate the Taylor expansion of the memory kernel to data that are accessible in MD simulations and experiments, thus allowing us to construct the equation of motion. As a numerical example, the procedure is applied to Brownian motion initialized in non-equilibrium conditions and is shown to be consistent with direct measurements from simulations.

  5. Patrol Detection for Replica Attacks on Wireless Sensor Networks

    OpenAIRE

    Wang, Liang-Min; Shi, Yang

    2011-01-01

    Replica attack is a critical concern in the security of wireless sensor networks. We employ mobile nodes as patrollers to detect replicas distributed in different zones in a network, in which a basic patrol detection protocol and two detection algorithms for stationary and mobile modes are presented. Then we perform security analysis to discuss the defense strategies against the possible attacks on the proposed detection protocol. Moreover, we show the advantages of the proposed protocol by d...

  6. Recent development of ionic liquid stationary phases for liquid chromatography.

    Science.gov (United States)

    Shi, Xianzhe; Qiao, Lizhen; Xu, Guowang

    2015-11-13

    Based on their particular physicochemical characteristics, ionic liquids have been widely applied in many fields of analytical chemistry. Many types of ionic liquids were immobilized on a support like silica or monolith as stationary phases for liquid chromatography. Moreover, different approaches were developed to bond covalently ionic liquids onto the supporting materials. The obtained ionic liquid stationary phases show multi-mode mechanism including hydrophobic, hydrophilic, hydrogen bond, anion exchange, π-π, and dipole-dipole interactions. Therefore, they could be used in different chromatographic modes including ion-exchange, RPLC, NPLC and HILIC to separate various classes of compounds. This review mainly summarizes the immobilized patterns and types of ionic liquid stationary phases, their retention mechanisms and applications in the recent five years. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Integrity assessment of stationary blade ring for nuclear power plant

    International Nuclear Information System (INIS)

    Park, Jung Yong; Chung, Yong Keun; Park, Jong Jin; Kang, Yong Ho

    2004-01-01

    The inner side between HP stationary blades in no.1 turbine of nuclear power plant A is damaged by the FAC(Flow Assisted Corrosion) which is exposed to moisture. For many years the inner side is repaired by welding the damaged part, however, the FAC continues to deteriorate the original material of the welded blade ring. In this study, we have two stages to verify the integrity of stationary blade ring in nuclear power plant A. In the stage I, replication of blade ring is performed to survey the microstructure of blade ring. In the stage II, the stress analysis of blade ring is performed to verify the structural safety of blade ring. Throughout the two stages analysis of blade ring, the stationary blade ring had remained undamaged

  8. Network evolution by nonlinear preferential rewiring of edges

    Science.gov (United States)

    Xu, Xin-Jian; Hu, Xiao-Ming; Zhang, Li-Jie

    2011-06-01

    The mathematical framework for small-world networks proposed in a seminal paper by Watts and Strogatz sparked a widespread interest in modeling complex networks in the past decade. However, most of research contributing to static models is in contrast to real-world dynamic networks, such as social and biological networks, which are characterized by rearrangements of connections among agents. In this paper, we study dynamic networks evolved by nonlinear preferential rewiring of edges. The total numbers of vertices and edges of the network are conserved, but edges are continuously rewired according to the nonlinear preference. Assuming power-law kernels with exponents α and β, the network structures in stationary states display a distinct behavior, depending only on β. For β>1, the network is highly heterogeneous with the emergence of starlike structures. For β<1, the network is widely homogeneous with a typical connectivity. At β=1, the network is scale free with an exponential cutoff.

  9. The stationary states of interacting fields

    NARCIS (Netherlands)

    Frazer, W.R.; Hove, Léon van

    1958-01-01

    As an application of a time-independent perturbation formalism developed earlier for systems with many degrees of freedom, we give in terms of diagrams the general perturbation expressions for the exact stationary states of interacting fields. The physical vacuum is obtained by applying to the bare

  10. Brownian quasi-particles and quantum quasi-particles

    International Nuclear Information System (INIS)

    Fronteau, J.

    1987-01-01

    The concept of quasi-particles is used in Statistical Mechanics as well as in Quantum Mechanics, to associate differentiable trajectories to the equations of evolution, trajectories on which a maximum of informations is concentrated concerning the phenomena studied. Two cases are treated numerically, that of the Fokker-Planck equation with an x - x 3 field, and that of the Schroedinger equation with null potential, in a situation of interference [fr

  11. Selectivity of some basic solutes on a poly(methyltetradecylsiloxane)-silica stationary phase.

    Science.gov (United States)

    Borges, Endler M; Collins, Carol H

    2011-11-01

    Complex analyses of polar compounds, especially basic ones, require more selective stationary phases. The present paper describes a stationary phase prepared by thermal immobilization of poly(methyltetradecylsiloxane) onto chromatographic silica (PMTDS-SiO(2)). This stationary phase presents hydrophobic and ion-exchange interactions that confer both high retention and unique selectivities for basic solutes. The influence of ion-exchange interactions is confirmed by the increase in retention factors of basic solutes when the mobile-phase pH changes from acidic to neutral and by the decrease in retention factors when the mobile-phase pH changes from neutral to alkaline. The ion-exchange properties of the stationary phase are enriched in neutral mobile phase (pH 7-7.5) using soft Lewis bases such as tricine and tris as buffers but are suppressed in both acidic (pH 2.5-6) and highly alkaline mobile phases (pH≤10). Increasing both temperature and flow rate permits more rapid separations while maintaining the selectivity. The stability of the stationary phase is evaluated with acid, neutral and alkaline mobile phases. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. Poisson-Nernst-Planck equations with steric effects - non-convexity and multiple stationary solutions

    Science.gov (United States)

    Gavish, Nir

    2018-04-01

    We study the existence and stability of stationary solutions of Poisson-Nernst-Planck equations with steric effects (PNP-steric equations) with two counter-charged species. We show that within a range of parameters, steric effects give rise to multiple solutions of the corresponding stationary equation that are smooth. The PNP-steric equation, however, is found to be ill-posed at the parameter regime where multiple solutions arise. Following these findings, we introduce a novel PNP-Cahn-Hilliard model, show that it is well-posed and that it admits multiple stationary solutions that are smooth and stable. The various branches of stationary solutions and their stability are mapped utilizing bifurcation analysis and numerical continuation methods.

  13. A statistical physics of stationary and metastable states

    International Nuclear Information System (INIS)

    Cabo, A; González, A; Curilef, S; Cabo-Bizet, N G; Vera, C A

    2011-01-01

    We present a generalization of Gibbs statistical mechanics designed to describe a general class of stationary and metastable equilibrium states. It is assumed that the physical system maximizes the entropy functional S subject to the standard conditions plus an extra conserved constraint function F, imposed to force the system to remain in the metastable configuration. After requiring additivity for two quasi-independent subsystems, and the commutation of the new constraint with the density matrix ρ, it is argued that F should be a homogeneous function of ρ, at least for systems in which the spectrum is sufficiently dense to be considered as continuous. Therefore, surprisingly, the analytic form of F turns out to be of the kind F(p i ) = p i q , where the p i are the eigenvalues of the density matrix and q is a real number to be determined. Thus, the discussion identifies the physical relevance of Lagrange multiplier constraints of the Tsallis kind and their q parameter, as enforced by the additivity of the constraint F which fixes the metastable state. An approximate analytic solution for the probability density is found for q close to unity. The procedure is applied to describe the results from the plasma experiment of Huang and Driscoll. For small and medium values of the radial distance, the measured density is predicted with a precision similar to that achieved by minimal enstrophy and Tsallis procedures. Also, the particle density is predicted at all the radial positions. Thus, the discussion gives a solution to the conceptual difficulties of the two above mentioned approaches as applied to this problem, which both predict a non-analytic abrupt vanishing of the density above a critical radial distance

  14. Quasi-greedy systems of integer translates

    DEFF Research Database (Denmark)

    Nielsen, Morten; Sikic, Hrvoje

    We consider quasi-greedy systems of integer translates in a finitely generated shift invariant subspace of L2(Rd), that is systems for which the thresholding approximation procedure is well behaved. We prove that every quasi-greedy system of integer translates is also a Riesz basis for its closed...

  15. Quasi-greedy systems of integer translates

    DEFF Research Database (Denmark)

    Nielsen, Morten; Sikic, Hrvoje

    2008-01-01

    We consider quasi-greedy systems of integer translates in a finitely generated shift-invariant subspace of L2(Rd), that is systems for which the thresholding approximation procedure is well behaved. We prove that every quasi-greedy system of integer translates is also a Riesz basis for its closed...

  16. CPAC: Energy-Efficient Data Collection through Adaptive Selection of Compression Algorithms for Sensor Networks

    Science.gov (United States)

    Lee, HyungJune; Kim, HyunSeok; Chang, Ik Joon

    2014-01-01

    We propose a technique to optimize the energy efficiency of data collection in sensor networks by exploiting a selective data compression. To achieve such an aim, we need to make optimal decisions regarding two aspects: (1) which sensor nodes should execute compression; and (2) which compression algorithm should be used by the selected sensor nodes. We formulate this problem into binary integer programs, which provide an energy-optimal solution under the given latency constraint. Our simulation results show that the optimization algorithm significantly reduces the overall network-wide energy consumption for data collection. In the environment having a stationary sink from stationary sensor nodes, the optimized data collection shows 47% energy savings compared to the state-of-the-art collection protocol (CTP). More importantly, we demonstrate that our optimized data collection provides the best performance in an intermittent network under high interference. In such networks, we found that the selective compression for frequent packet retransmissions saves up to 55% energy compared to the best known protocol. PMID:24721763

  17. Population processes with unbounded extinction rate conditioned to non-extinction

    OpenAIRE

    Champagnat, Nicolas; Villemonais, Denis

    2016-01-01

    This article studies the quasi-stationary behaviour of population processes with unbounded absorption rate, including one-dimensional birth and death processes with catastrophes and multi-dimensional birth and death processes, modeling biological populations in interaction. To handle this situation, we develop original non-linear Lyapunov criteria. We obtain the exponential convergence in total variation of the conditional distributions to a unique quasi-stationary distribution, uniformly wit...

  18. Discretization of Stationary Solutions of Stochastic Systems Driven by Fractional Brownian Motion

    International Nuclear Information System (INIS)

    Garrido-Atienza, Maria J.; Kloeden, Peter E.; Neuenkirch, Andreas

    2009-01-01

    In this article we study the behavior of dissipative systems with additive fractional noise of any Hurst parameter. Under a one-sided dissipative Lipschitz condition on the drift the continuous stochastic system is shown to have a unique stationary solution, which pathwise attracts all other solutions. The same holds for the discretized stochastic system, if the drift-implicit Euler method is used for the discretization. Moreover, the unique stationary solution of the drift-implicit Euler scheme converges to the unique stationary solution of the original system as the stepsize of the discretization decreases

  19. Improved methods for the mathematically controlled comparison of biochemical systems

    Directory of Open Access Journals (Sweden)

    Schwacke John H

    2004-06-01

    Full Text Available Abstract The method of mathematically controlled comparison provides a structured approach for the comparison of alternative biochemical pathways with respect to selected functional effectiveness measures. Under this approach, alternative implementations of a biochemical pathway are modeled mathematically, forced to be equivalent through the application of selected constraints, and compared with respect to selected functional effectiveness measures. While the method has been applied successfully in a variety of studies, we offer recommendations for improvements to the method that (1 relax requirements for definition of constraints sufficient to remove all degrees of freedom in forming the equivalent alternative, (2 facilitate generalization of the results thus avoiding the need to condition those findings on the selected constraints, and (3 provide additional insights into the effect of selected constraints on the functional effectiveness measures. We present improvements to the method and related statistical models, apply the method to a previously conducted comparison of network regulation in the immune system, and compare our results to those previously reported.

  20. Quasi-molecular states in sd-shell nuclei

    International Nuclear Information System (INIS)

    Kubono, S.; Ikeda, N.; Nomura, T.

    1988-08-01

    Quasi-molecular states near and below the threshold of the molecular configuration in sd-shell nuclei are discussed using recent experimental data with particle-gamma coincidence method and particle-particle coincidence method. Possible quasi-molecular states have been identified in 24 Mg as well as in 28 Si and 32 S. The important role of quasi-molecular states are discussed, specifically for the shape evolution of nuclei as a function of excitation energy and angular momentum. (author)

  1. Prepotential approach to exact and quasi-exact solvabilities

    International Nuclear Information System (INIS)

    Ho, C.-L.

    2008-01-01

    Exact and quasi-exact solvabilities of the one-dimensional Schroedinger equation are discussed from a unified viewpoint based on the prepotential together with Bethe ansatz equations. This is a constructive approach which gives the potential as well as the eigenfunctions and eigenvalues simultaneously. The novel feature of the present work is the realization that both exact and quasi-exact solvabilities can be solely classified by two integers, the degrees of two polynomials which determine the change of variable and the zeroth order prepotential. Most of the well-known exactly and quasi-exactly solvable models, and many new quasi-exactly solvable ones, can be generated by appropriately choosing the two polynomials. This approach can be easily extended to the constructions of exactly and quasi-exactly solvable Dirac, Pauli, and Fokker-Planck equations

  2. Transitions in genetic toggle switches driven by dynamic disorder in rate coefficients

    International Nuclear Information System (INIS)

    Chen, Hang; Thill, Peter; Cao, Jianshu

    2016-01-01

    In biochemical systems, intrinsic noise may drive the system switch from one stable state to another. We investigate how kinetic switching between stable states in a bistable network is influenced by dynamic disorder, i.e., fluctuations in the rate coefficients. Using the geometric minimum action method, we first investigate the optimal transition paths and the corresponding minimum actions based on a genetic toggle switch model in which reaction coefficients draw from a discrete probability distribution. For the continuous probability distribution of the rate coefficient, we then consider two models of dynamic disorder in which reaction coefficients undergo different stochastic processes with the same stationary distribution. In one, the kinetic parameters follow a discrete Markov process and in the other they follow continuous Langevin dynamics. We find that regulation of the parameters modulating the dynamic disorder, as has been demonstrated to occur through allosteric control in bistable networks in the immune system, can be crucial in shaping the statistics of optimal transition paths, transition probabilities, and the stationary probability distribution of the network.

  3. Transitions in genetic toggle switches driven by dynamic disorder in rate coefficients

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Hang, E-mail: hangchen@mit.edu; Thill, Peter; Cao, Jianshu [Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 (United States)

    2016-05-07

    In biochemical systems, intrinsic noise may drive the system switch from one stable state to another. We investigate how kinetic switching between stable states in a bistable network is influenced by dynamic disorder, i.e., fluctuations in the rate coefficients. Using the geometric minimum action method, we first investigate the optimal transition paths and the corresponding minimum actions based on a genetic toggle switch model in which reaction coefficients draw from a discrete probability distribution. For the continuous probability distribution of the rate coefficient, we then consider two models of dynamic disorder in which reaction coefficients undergo different stochastic processes with the same stationary distribution. In one, the kinetic parameters follow a discrete Markov process and in the other they follow continuous Langevin dynamics. We find that regulation of the parameters modulating the dynamic disorder, as has been demonstrated to occur through allosteric control in bistable networks in the immune system, can be crucial in shaping the statistics of optimal transition paths, transition probabilities, and the stationary probability distribution of the network.

  4. Quintessential quartic quasi-topological quartet

    Energy Technology Data Exchange (ETDEWEB)

    Ahmed, Jamil [Department of Physics and Astronomy, University of Waterloo,200 University Avenue West, Waterloo, ON, N2L 3G1 (Canada); Department of Mathematics, Quaid-i-Azam University,Islamabad (Pakistan); Hennigar, Robie A. [Department of Physics and Astronomy, University of Waterloo,200 University Avenue West, Waterloo, ON, N2L 3G1 (Canada); Mann, Robert B. [Department of Physics and Astronomy, University of Waterloo,200 University Avenue West, Waterloo, ON, N2L 3G1 (Canada); Perimeter Institute,31 Caroline Street North, Waterloo, ON, N2L 2Y5 (Canada); Mir, Mozhgan [Department of Physics and Astronomy, University of Waterloo,200 University Avenue West, Waterloo, ON, N2L 3G1 (Canada); School of Physics, Institute for Research in Fundamental Sciences (IPM),P.O. Box 19395-5531, Tehran (Iran, Islamic Republic of)

    2017-05-25

    We construct the quartic version of generalized quasi-topological gravity, which was recently constructed to cubic order in https://arxiv.org/abs/1703.01631. This class of theories includes Lovelock gravity and a known form of quartic quasi-topological gravity as special cases and possess a number of remarkable properties: (i) In vacuum, or in the presence of suitable matter, there is a single independent field equation which is a total derivative. (ii) At the linearized level, the equations of motion on a maximally symmetric background are second order, coinciding with the linearized Einstein equations up to a redefinition of Newton’s constant. Therefore, these theories propagate only the massless, transverse graviton on a maximally symmetric background. (iii) While the Lovelock and quasi-topological terms are trivial in four dimensions, there exist four new generalized quasi-topological terms (the quartet) that are nontrivial, leading to interesting higher curvature theories in d≥4 dimensions that appear well suited for holographic study. We construct four dimensional black hole solutions to the theory and study their properties. A study of black brane solutions in arbitrary dimensions reveals that these solutions are modified from the ‘universal’ properties they possess in other higher curvature theories, which may lead to interesting consequences for the dual CFTs.

  5. On Riemannian manifolds (Mn, g) of quasi-constant curvature

    International Nuclear Information System (INIS)

    Rahman, M.S.

    1995-07-01

    A Riemannian manifold (M n , g) of quasi-constant curvature is defined. It is shown that an (M n , g) in association with other class of manifolds gives rise, under certain conditions, to a manifold of quasi-constant curvature. Some observations on how a manifold of quasi-constant curvature accounts for a pseudo Ricci-symmetric manifold and quasi-umbilical hypersurface are made. (author). 10 refs

  6. Evolution-development congruence in pattern formation dynamics: Bifurcations in gene expression and regulation of networks structures.

    Science.gov (United States)

    Kohsokabe, Takahiro; Kaneko, Kunihiko

    2016-01-01

    Search for possible relationships between phylogeny and ontogeny is important in evolutionary-developmental biology. Here we uncover such relationships by numerical evolution and unveil their origin in terms of dynamical systems theory. By representing developmental dynamics of spatially located cells with gene expression dynamics with cell-to-cell interaction under external morphogen gradient, gene regulation networks are evolved under mutation and selection with the fitness to approach a prescribed spatial pattern of expressed genes. For most numerical evolution experiments, evolution of pattern over generations and development of pattern by an evolved network exhibit remarkable congruence. Both in the evolution and development pattern changes consist of several epochs where stripes are formed in a short time, while for other temporal regimes, pattern hardly changes. In evolution, these quasi-stationary regimes are generations needed to hit relevant mutations, while in development, they are due to some gene expression that varies slowly and controls the pattern change. The morphogenesis is regulated by combinations of feedback or feedforward regulations, where the upstream feedforward network reads the external morphogen gradient, and generates a pattern used as a boundary condition for the later patterns. The ordering from up to downstream is common in evolution and development, while the successive epochal changes in development and evolution are represented as common bifurcations in dynamical-systems theory, which lead to the evolution-development congruence. Mechanism of exceptional violation of the congruence is also unveiled. Our results provide a new look on developmental stages, punctuated equilibrium, developmental bottlenecks, and evolutionary acquisition of novelty in morphogenesis. © 2015 The Authors. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution Published by Wiley Periodicals, Inc.

  7. Minimax discrimination of quasi-Bell states

    Energy Technology Data Exchange (ETDEWEB)

    Kato, Kentaro [Quantum ICT Research Institute, Tamagawa University, 6-1-1 Tamagawa-gakuen, Machida, Tokyo 194-8610 (Japan)

    2014-12-04

    An optimal quantum measurement is considered for the so-called quasi-Bell states under the quantum minimax criterion. It is shown that the minimax-optimal POVM for the quasi-Bell states is given by its square-root measurement and is applicable to the teleportation of a superposition of two coherent states.

  8. Electric Current Filamentation Induced by 3D Plasma Flows in the Solar Corona

    Energy Technology Data Exchange (ETDEWEB)

    Nickeler, Dieter H.; Karlický, Marian; Kraus, Michaela [Astronomický ústav, Akademie věd České Republiky, v.v.i., Fričova 298, 251 65 Ondřejov (Czech Republic); Wiegelmann, Thomas, E-mail: dieter.nickeler@asu.cas.cz [Max-Planck Institut für Sonnensystemforschung, Justus-von-Liebig-Weg 3, D-37077 Göttingen (Germany)

    2017-03-10

    Many magnetic structures in the solar atmosphere evolve rather slowly, so they can be assumed as (quasi-)static or (quasi-)stationary and represented via magnetohydrostatic (MHS) or stationary magnetohydrodynamic (MHD) equilibria, respectively. While exact 3D solutions would be desired, they are extremely difficult to find in stationary MHD. We construct solutions with magnetic and flow vector fields that have three components depending on all three coordinates. We show that the noncanonical transformation method produces quasi-3D solutions of stationary MHD by mapping 2D or 2.5D MHS equilibria to corresponding stationary MHD states, that is, states that display the same field-line structure as the original MHS equilibria. These stationary MHD states exist on magnetic flux surfaces of the original 2D MHS states. Although the flux surfaces and therefore also the equilibria have a 2D character, these stationary MHD states depend on all three coordinates and display highly complex currents. The existence of geometrically complex 3D currents within symmetric field-line structures provides the basis for efficient dissipation of the magnetic energy in the solar corona by ohmic heating. We also discuss the possibility of maintaining an important subset of nonlinear MHS states, namely force-free fields, by stationary flows. We find that force-free fields with nonlinear flows only arise under severe restrictions of the field-line geometry and of the magnetic flux density distribution.

  9. Effect of non-stationary climate on infectious gastroenteritis transmission in Japan

    Science.gov (United States)

    Onozuka, Daisuke

    2014-06-01

    Local weather factors are widely considered to influence the transmission of infectious gastroenteritis. Few studies, however, have examined the non-stationary relationships between global climatic factors and transmission of infectious gastroenteritis. We analyzed monthly data for cases of infectious gastroenteritis in Fukuoka, Japan from 2000 to 2012 using cross-wavelet coherency analysis to assess the pattern of associations between indices for the Indian Ocean Dipole (IOD) and El Niño Southern Oscillation (ENSO). Infectious gastroenteritis cases were non-stationary and significantly associated with the IOD and ENSO (Multivariate ENSO Index [MEI], Niño 1 + 2, Niño 3, Niño 4, and Niño 3.4) for a period of approximately 1 to 2 years. This association was non-stationary and appeared to have a major influence on the synchrony of infectious gastroenteritis transmission. Our results suggest that non-stationary patterns of association between global climate factors and incidence of infectious gastroenteritis should be considered when developing early warning systems for epidemics of infectious gastroenteritis.

  10. Modeling of uncertainties in biochemical reactions.

    Science.gov (United States)

    Mišković, Ljubiša; Hatzimanikatis, Vassily

    2011-02-01

    Mathematical modeling is an indispensable tool for research and development in biotechnology and bioengineering. The formulation of kinetic models of biochemical networks depends on knowledge of the kinetic properties of the enzymes of the individual reactions. However, kinetic data acquired from experimental observations bring along uncertainties due to various experimental conditions and measurement methods. In this contribution, we propose a novel way to model the uncertainty in the enzyme kinetics and to predict quantitatively the responses of metabolic reactions to the changes in enzyme activities under uncertainty. The proposed methodology accounts explicitly for mechanistic properties of enzymes and physico-chemical and thermodynamic constraints, and is based on formalism from systems theory and metabolic control analysis. We achieve this by observing that kinetic responses of metabolic reactions depend: (i) on the distribution of the enzymes among their free form and all reactive states; (ii) on the equilibrium displacements of the overall reaction and that of the individual enzymatic steps; and (iii) on the net fluxes through the enzyme. Relying on this observation, we develop a novel, efficient Monte Carlo sampling procedure to generate all states within a metabolic reaction that satisfy imposed constrains. Thus, we derive the statistics of the expected responses of the metabolic reactions to changes in enzyme levels and activities, in the levels of metabolites, and in the values of the kinetic parameters. We present aspects of the proposed framework through an example of the fundamental three-step reversible enzymatic reaction mechanism. We demonstrate that the equilibrium displacements of the individual enzymatic steps have an important influence on kinetic responses of the enzyme. Furthermore, we derive the conditions that must be satisfied by a reversible three-step enzymatic reaction operating far away from the equilibrium in order to respond to

  11. Non-stationary flow of hydraulic oil in long pipe

    Directory of Open Access Journals (Sweden)

    Hružík Lumír

    2014-03-01

    Full Text Available The paper deals with experimental evaluation and numerical simulation of non-stationary flow of hydraulic oil in a long hydraulic line. Non-stationary flow is caused by a quick closing of valves at the beginning and the end of the pipe. Time dependence of pressure is measured by means of pressure sensors at the beginning and the end of the pipe. A mathematical model of a given circuit is created using Matlab SimHydraulics software. The long line is simulated by means of segmented pipe. The simulation is verified by experiment.

  12. Dynamic Modeling of Cell-Free Biochemical Networks Using Effective Kinetic Models

    Science.gov (United States)

    2015-03-03

    based whole-cell models of E. coli [6]. Conversely , highly abstracted kinetic frameworks, such as the cybernetic framework, represented a paradigm shift...metabolic objective function has been the optimization of biomass formation [18], although other metabolic objectives have also been estimated [19...experimental data. Toward these questions, we explored five hypothetical cell-free networks. Each network shared the same enzymatic connectivity, but

  13. REDUCTION IN CUTS SPEED AT THE BEGINNING OF A SORTING SIDINGS, EQUIPPED WITH QUASI-CONTINUOUS SPEED CONTROL SYSTEM

    Directory of Open Access Journals (Sweden)

    O. A. Nazarov

    2016-08-01

    Full Text Available Purpose. Clear and uninterrupted operation of humps depends on the quality of technical equipment and control technology of cuts speed. Technology of interval and purposive regulation of cuts speed is used at most humps. The article discusses ways to reduce the cuts rolling speed to a safe level at the beginning of the sorting sidings equipped with quasi-continuous speed control system. Methodology. It proposed three fundamentally different ways to reduce the cuts rolling speed at the beginning of the sorting siding. The analysis of the ways to reduce cuts rolling speed to a safe level at the beginning of the sorting sidings was conducted using simulation the process of cuts rolling from humps equipped with quasi-continuous speed control. Findings. As a result of analysis, the inappropriateness of opposite elevation using on the roll-out part of the hump after the last separation switch point. Spot regulators of cars speed can be used to reduce the cuts rolling speed at the beginning of the sorting siding, but this leads to a division conditions deterioration on the last separating switch points of long cuts with the following after them short cuts. Reducing the cuts rolling speed at the beginning of the sorting siding can be carried out using the beam on a stationary wagon retarders park brake position. Control Algorithm park brake position is quite simple. All produce should be unhooked from it at a safe speed. If the accuracy of the implementation of the set speed output to unhook from the park brake position is low, it is possible to eliminate the error of point regulators cars speed. Originality. The question where to start location point of wagon retarders zone to reduce speed to cut level requires additional research. Reducing rolling cut the speed at the beginning of the sorting sidings can be carried out using the beam on a stationary wagon retarders park brake position. Practical value. Control Algorithm park brake position is quite

  14. Open quantum generalisation of Hopfield neural networks

    Science.gov (United States)

    Rotondo, P.; Marcuzzi, M.; Garrahan, J. P.; Lesanovsky, I.; Müller, M.

    2018-03-01

    We propose a new framework to understand how quantum effects may impact on the dynamics of neural networks. We implement the dynamics of neural networks in terms of Markovian open quantum systems, which allows us to treat thermal and quantum coherent effects on the same footing. In particular, we propose an open quantum generalisation of the Hopfield neural network, the simplest toy model of associative memory. We determine its phase diagram and show that quantum fluctuations give rise to a qualitatively new non-equilibrium phase. This novel phase is characterised by limit cycles corresponding to high-dimensional stationary manifolds that may be regarded as a generalisation of storage patterns to the quantum domain.

  15. A Non-Homogeneous Dynamic Bayesian Network with Sequentially Coupled Interaction Parameters for Applications in Systems and Synthetic Biology

    NARCIS (Netherlands)

    Grzegorczyk, Marco; Husmeier, Dirk

    2012-01-01

    An important and challenging problem in systems biology is the inference of gene regulatory networks from short non-stationary time series of transcriptional profiles. A popular approach that has been widely applied to this end is based on dynamic Bayesian networks (DBNs), although traditional

  16. The computation of stationary distributions of Markov chains through perturbations

    Directory of Open Access Journals (Sweden)

    Jeffery J. Hunter

    1991-01-01

    Full Text Available An algorithmic procedure for the determination of the stationary distribution of a finite, m-state, irreducible Markov chain, that does not require the use of methods for solving systems of linear equations, is presented. The technique is based upon a succession of m, rank one, perturbations of the trivial doubly stochastic matrix whose known steady state vector is updated at each stage to yield the required stationary probability vector.

  17. Identification of neutral biochemical network models from time series data.

    Science.gov (United States)

    Vilela, Marco; Vinga, Susana; Maia, Marco A Grivet Mattoso; Voit, Eberhard O; Almeida, Jonas S

    2009-05-05

    The major difficulty in modeling biological systems from multivariate time series is the identification of parameter sets that endow a model with dynamical behaviors sufficiently similar to the experimental data. Directly related to this parameter estimation issue is the task of identifying the structure and regulation of ill-characterized systems. Both tasks are simplified if the mathematical model is canonical, i.e., if it is constructed according to strict guidelines. In this report, we propose a method for the identification of admissible parameter sets of canonical S-systems from biological time series. The method is based on a Monte Carlo process that is combined with an improved version of our previous parameter optimization algorithm. The method maps the parameter space into the network space, which characterizes the connectivity among components, by creating an ensemble of decoupled S-system models that imitate the dynamical behavior of the time series with sufficient accuracy. The concept of sloppiness is revisited in the context of these S-system models with an exploration not only of different parameter sets that produce similar dynamical behaviors but also different network topologies that yield dynamical similarity. The proposed parameter estimation methodology was applied to actual time series data from the glycolytic pathway of the bacterium Lactococcus lactis and led to ensembles of models with different network topologies. In parallel, the parameter optimization algorithm was applied to the same dynamical data upon imposing a pre-specified network topology derived from prior biological knowledge, and the results from both strategies were compared. The results suggest that the proposed method may serve as a powerful exploration tool for testing hypotheses and the design of new experiments.

  18. Evaluation of hydrophilic interaction liquid chromatography stationary phases for analysis of opium alkaloids.

    Science.gov (United States)

    Bagheri, Mohsen; Taheri, Mohammadreza; Farhadpour, Mohsen; Rezadoost, Hassan; Ghassempour, Alireza; Aboul-Enein, Hassan Y

    2017-08-18

    The separation of a mixture containing five major opium alkaloids, namely morphine, codeine, thebaine, noscapine and papaverine has been investigated in hydrophilic interaction liquid chromatography (HILIC) mode using five different stationary phases: bare silica, zwitterion, aminopropyl, diol and cyanopropyl. In order to propose the appropriate column for separation and purification, retention behaviors of the five natural opioids have been studied on mentioned HILIC stationary phases. The mechanism of separation in diverse HILIC media, based on the formation of water-rich layer on surface of the HILIC stationary phases and the physicochemical properties of opium alkaloids, such as pKa (acidic pK) and the octanol-water distribution coefficient (log Do/w) are discussed. Chromatographic responses including modified limit of detection LOD m , signal to noise ratio (S/N) m , and defined modified R Sm have considered for suggestion of the suitable column for quantitative/qualitative and preparative purposes. According to the obtained results, diol stationary phase is best suited for analytical chromatography, whereas bare silica and zwitterionic stationary phases are appropriate for preparative applications. Copyright © 2017 Elsevier B.V. All rights reserved.

  19. A new derivation of the conformally flat stationary cyclic non-circular spacetimes

    International Nuclear Information System (INIS)

    Ayon-Beato, Eloy; Campuzano, Cuauhtemoc; GarcIa, Alberto

    2007-01-01

    We present an alternative way to derive the conformally flat stationary cyclic non-circular spacetimes. We show that there is no room for stationary axisymmetric non-circular axisymmetric spacetimes. We reproduce the well know results for this sort of spacetimes recently reported in [1

  20. A new derivation of the conformally flat stationary cyclic non-circular spacetimes

    Energy Technology Data Exchange (ETDEWEB)

    Ayon-Beato, Eloy [Departamento de Fisica, Facultad de Fisica e Inteligencia Artificial, Universidad Veracruzana, 91000 Xalapa, Veracruz (Mexico); Campuzano, Cuauhtemoc [Departamento de Fisica, Facultad de Fisica e Inteligencia Artificial, Universidad Veracruzana, 91000 Xalapa, Veracruz (Mexico); GarcIa, Alberto [Department of Physics, University of California, Davis, CA 95616 (United States)

    2007-11-15

    We present an alternative way to derive the conformally flat stationary cyclic non-circular spacetimes. We show that there is no room for stationary axisymmetric non-circular axisymmetric spacetimes. We reproduce the well know results for this sort of spacetimes recently reported in [1].

  1. Biochemical Control With Radiotherapy Improves Overall Survival in Intermediate and High-Risk Prostate Cancer Patients Who Have an Estimated 10-Year Overall Survival of >90%

    International Nuclear Information System (INIS)

    Herbert, Christopher; Liu, Mitchell; Tyldesley, Scott; Morris, W. James; Joffres, Michel; Khaira, Mandip; Kwan, Winkle; Moiseenko, Vitali; Pickles, Thomas

    2012-01-01

    Purpose: To identify subgroups of patients with carcinoma of the prostate treated with radical radiotherapy that have improved overall survival when disease is biochemically controlled. Methods and Materials: A cohort of 1,060 prostate cancer patients treated with radical radiotherapy was divided into nine subgroups based on National Comprehensive Cancer Network risk category and estimated 10-year overall survival (eOS 10y) derived from the age adjusted Charlson Comorbidity Index. Patients with and without biochemical control were compared with respect to overall survival. Actuarial estimates of overall survival were calculated using the Kaplan-Meier method. Univariate and multivariate Cox proportional hazards models were used for analysis of overall survival. Results: Median follow-up was 125 months (range, 51–176 months). Only the subgroups with high or intermediate risk disease and an eOS 10y of >90% had a statistically significantly improved overall survival when prostate cancer was biochemically controlled. In all other groups, biochemical control made no significant difference to overall survival. In the subgroup with high-risk disease and eOS 10y >90%, actuarial overall survival was 86.3% (95% confidence interval [CI] 78.5%–94.1%) and 62.1% (95% CI 52.9%–71.3%) for patients with biochemical control and biochemical relapse respectively (p = 0.002). In the intermediate risk group with eOS >90%, actuarial overall survival was 95.3% (95% CI 89.0%–100%) and 79.8% (95% CI 68.0%–91.6%) for biochemically controlled and biochemically relapsed patients (p = 0.033). On multivariate analysis, National Comprehensive Cancer Network risk group (p = 0.005), biochemical control (p = 0.033) and eOS 10y (p 90%.

  2. Non-Stationary Dependence Structures for Spatial Extremes

    KAUST Repository

    Huser, Raphaë l; Genton, Marc G.

    2016-01-01

    been developed, and fitted to various types of data. However, a recurrent problem is the modeling of non-stationarity. In this paper, we develop non-stationary max-stable dependence structures in which covariates can be easily incorporated. Inference

  3. Stationary neoclassical profiles of plasma parameters in stellarators

    International Nuclear Information System (INIS)

    Danilkin, I.S.; Mineev, A.B.

    1991-01-01

    The properties of the neoclassical model of heat and particle transport are considered in connection with calculations of stationary profiles of the plasma parameters in stellarators. The most important feature is the poor agreement with real physical conditions of the boundary, which imposes the necessity of invoking either an additional anomalous transport or a special (although technically possible) consistency between the particle and heat sources in order to obtain a solution in the form of a correct monotonically decreasing profile. In search for monotonic stationary profiles maintained by external sources, it is ascertained that the neoclassical theory does not give rise to the well-known multivalued solutions for the ambipolar electric field

  4. HIGH PERFORMANCE STATIONARY DISCHARGES IN THE DIII-D TOKAMAK

    International Nuclear Information System (INIS)

    Luce, T.C.; Wade, M.R.; Ferron, J.R.; Politzer, P.A.; Hyatt, A.W.; Sips, A.C.C.; Murakami, M.

    2003-01-01

    Recent experiments in the DIII-D tokamak [J.L. Luxon, Nucl. Fusion 42,614 (2002)] have demonstrated high β with good confinement quality under stationary conditions. Two classes of stationary discharges are observed--low q 95 discharges with sawteeth and higher q 95 without sawteeth. The discharges are deemed stationary when the plasma conditions are maintained for times greater than the current profile relaxation time. In both cases the normalized fusion performance (β N H 89P /q 95 2 ) reaches or exceeds the value of this parameter projected for Q fus = 10 in the International Thermonuclear Experimental Reactor (ITER) design [R. Aymar, et al., Plasma Phys. Control. Fusion 44, 519 (2002)]. The presence of sawteeth reduces the maximum achievable normalized β, while confinement quality (confinement time relative to scalings) is largely independent of q 95 . Even with the reduced β limit, the normalized fusion performance maximizes at the lowest q 95 . Projections to burning plasma conditions are discussed, including the methodology of the projection and the key physics issues which still require investigation

  5. A simple stationary semi-analytical wake model

    DEFF Research Database (Denmark)

    Larsen, Gunner Chr.

    We present an idealized simple, but fast, semi-analytical algorithm for computation of stationary wind farm wind fields with a possible potential within a multi-fidelity strategy for wind farm topology optimization. Basically, the model considers wakes as linear perturbations on the ambient non......-linear. With each of these approached, a parabolic system are described, which is initiated by first considering the most upwind located turbines and subsequently successively solved in the downstream direction. Algorithms for the resulting wind farm flow fields are proposed, and it is shown that in the limit......-uniform mean wind field, although the modelling of the individual stationary wake flow fields includes non-linear terms. The simulation of the individual wake contributions are based on an analytical solution of the thin shear layer approximation of the NS equations. The wake flow fields are assumed...

  6. BISEN: Biochemical simulation environment

    NARCIS (Netherlands)

    Vanlier, J.; Wu, F.; Qi, F.; Vinnakota, K.C.; Han, Y.; Dash, R.K.; Yang, F.; Beard, D.A.

    2009-01-01

    The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for

  7. Evaluation of the effects of Islamic fasting on the biochemical markers of health.

    Directory of Open Access Journals (Sweden)

    Akbar Ali Babaei

    2016-07-01

    Full Text Available Introduction: Ramadan is the ninth month of the lunar Islamic calendar, during which Muslims are obliged to perform specific rites and rituals. Fasting is considered the most important ritual during the holy month of Ramadan. Fasting variably influences the health of individuals, which could be attributed to the changes in the concentrations of certain biochemical markers. This study aimed to elucidate the health effects of fasting through evaluating the impact of this Islamic duty on blood biochemistry. Materials and Methods: This quasi-experimental study was conducted on 40 male volunteers employed at North Khorasan University of Medical Sciences, Iran.Data collection and phlebotomy were performed before fast breaking(Iftar on the first and last day of Ramadan. Fasting duration was 11 hours per day. Serum biochemical factors, including blood glucose, uric acid, albumin, low-density lipoprotein(LDL, high-density lipoprotein (HDL, total cholesterol and triglyceride(TG, were measured in all the participants at the beginning and end of Ramadan. Data analysis was performed in SPSS using paired-samples T-test to compare the mean variables. Results: Mean age of the participants in this study was 39.11±8.602 years. After one month of fasting, a significant reduction was observed in the mean levels of blood glucose, uric acid, TG, and LDL(P

  8. Plasma oscillations in a stationary external magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Ciulli, S [Joint Institute for Nuclear Research, Dubna, Moscow (USSR); Micu, M [Institute of Atomic Physics, Bucharest (Romania)

    1958-07-01

    The stationary distribution function as well as the small deviations from the stationary state of a gas discharge using the Boltzmann equation is studied as a basis for the calculations. The stationary problem which is discussed corresponds to plasma with cylindrical symmetry. It leads to a Maxwell velocity distribution and to a spatial distribution function which has the asymptotic form 1/r{sup 4}. The plasma perturbations are estimated by the deviations of the first order moments from their Maxwell values. A homogeneous system of differential equations is derived for the Fourier amplitudes of the magnetic field and their asymptotic form is studied. The dispersion relation is obtained by joining smoothly a solution regular at the origin with the regular asymptotic one.A number of idealizations and approximations have been made in the present analysis which limit the utility of the formulae obtained. For example, if the collision term is included in the Boltzmann equation additional quantities appear in the final results, i.e., viscosity, thermal and electrical conductivity, etc. Furthermore, the finite dimensions of linear discharge tubes or the toroidal form of some discharges strongly modify the present results. Taking into account these additional effects, exact solutions are to be obtained numerically for different values of the experimental parameters.

  9. Non-stationary dynamics of climate variability in synchronous influenza epidemics in Japan

    Science.gov (United States)

    Onozuka, Daisuke; Hagihara, Akihito

    2015-09-01

    Seasonal variation in the incidence of influenza is widely assumed. However, few studies have examined non-stationary relationships between global climate factors and influenza epidemics. We examined the monthly incidence of influenza in Fukuoka, Japan, from 2000 to 2012 using cross-wavelet coherency analysis to assess the patterns of associations between indices for the Indian Ocean Dipole (IOD) and El Niño Southern Oscillation (ENSO). The monthly incidence of influenza showed cycles of 1 year with the IOD and 2 years with ENSO indices (Multivariate, Niño 4, and Niño 3.4). These associations were non-stationary and appeared to have major influences on the synchrony of influenza epidemics. Our study provides quantitative evidence that non-stationary associations have major influences on synchrony between the monthly incidence of influenza and the dynamics of the IOD and ENSO. Our results call for the consideration of non-stationary patterns of association between influenza cases and climatic factors in early warning systems.

  10. Quasi-Feller Markov chains

    Directory of Open Access Journals (Sweden)

    Jean B. Lasserre

    2000-01-01

    Full Text Available We consider the class of Markov kernels for which the weak or strong Feller property fails to hold at some discontinuity set. We provide a simple necessary and sufficient condition for existence of an invariant probability measure as well as a Foster-Lyapunov sufficient condition. We also characterize a subclass, the quasi (weak or strong Feller kernels, for which the sequences of expected occupation measures share the same asymptotic properties as for (weak or strong Feller kernels. In particular, it is shown that the sequences of expected occupation measures of strong and quasi strong-Feller kernels with an invariant probability measure converge setwise to an invariant measure.

  11. Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems

    Science.gov (United States)

    Pischel, Dennis; Sundmacher, Kai; Flassig, Robert J.

    2017-01-01

    Abstract Motivation: Biological cells operate in a noisy regime influenced by intrinsic, extrinsic and external noise, which leads to large differences of individual cell states. Stochastic effects must be taken into account to characterize biochemical kinetics accurately. Since the exact solution of the chemical master equation, which governs the underlying stochastic process, cannot be derived for most biochemical systems, approximate methods are used to obtain a solution. Results: In this study, a method to efficiently simulate the various sources of noise simultaneously is proposed and benchmarked on several examples. The method relies on the combination of the sigma point approach to describe extrinsic and external variability and the τ-leaping algorithm to account for the stochasticity due to probabilistic reactions. The comparison of our method to extensive Monte Carlo calculations demonstrates an immense computational advantage while losing an acceptable amount of accuracy. Additionally, the application to parameter optimization problems in stochastic biochemical reaction networks is shown, which is rarely applied due to its huge computational burden. To give further insight, a MATLAB script is provided including the proposed method applied to a simple toy example of gene expression. Availability and implementation: MATLAB code is available at Bioinformatics online. Contact: flassig@mpi-magdeburg.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:28881987

  12. Condensation in models with factorized and pair-factorized stationary states

    International Nuclear Information System (INIS)

    Evans, M R; Waclaw, B

    2015-01-01

    Non-equilibrium real-space condensation is a phenomenon in which a finite fraction of some conserved quantity (mass, particles, etc) becomes spatially localized. We review two popular stochastic models of hopping particles that lead to condensation and whose stationary states assume a factorized form: the zero-range process and the misanthrope process, and their various generalizations. We also introduce a new model—a misanthrope process with parallel dynamics—that exhibits condensation and has a pair-factorized stationary state

  13. Unveiling non-stationary coupling between Amazon and ocean during recent extreme events

    Science.gov (United States)

    Ramos, Antônio M. de T.; Zou, Yong; de Oliveira, Gilvan Sampaio; Kurths, Jürgen; Macau, Elbert E. N.

    2018-02-01

    The interplay between extreme events in the Amazon's precipitation and the anomaly in the temperature of the surrounding oceans is not fully understood, especially its causal relations. In this paper, we investigate the climatic interaction between these regions from 1999 until 2012 using modern tools of complex system science. We identify the time scale of the coupling quantitatively and unveil the non-stationary influence of the ocean's temperature. The findings show consistently the distinctions between the coupling in the recent major extreme events in Amazonia, such as the two droughts that happened in 2005 and 2010 and the three floods during 1999, 2009 and 2012. Interestingly, the results also reveal the influence over the anomalous precipitation of Southwest Amazon has become increasingly lagged. The analysis can shed light on the underlying dynamics of the climate network system and consequently can improve predictions of extreme rainfall events.

  14. Identification of neutral biochemical network models from time series data

    Directory of Open Access Journals (Sweden)

    Maia Marco

    2009-05-01

    Full Text Available Abstract Background The major difficulty in modeling biological systems from multivariate time series is the identification of parameter sets that endow a model with dynamical behaviors sufficiently similar to the experimental data. Directly related to this parameter estimation issue is the task of identifying the structure and regulation of ill-characterized systems. Both tasks are simplified if the mathematical model is canonical, i.e., if it is constructed according to strict guidelines. Results In this report, we propose a method for the identification of admissible parameter sets of canonical S-systems from biological time series. The method is based on a Monte Carlo process that is combined with an improved version of our previous parameter optimization algorithm. The method maps the parameter space into the network space, which characterizes the connectivity among components, by creating an ensemble of decoupled S-system models that imitate the dynamical behavior of the time series with sufficient accuracy. The concept of sloppiness is revisited in the context of these S-system models with an exploration not only of different parameter sets that produce similar dynamical behaviors but also different network topologies that yield dynamical similarity. Conclusion The proposed parameter estimation methodology was applied to actual time series data from the glycolytic pathway of the bacterium Lactococcus lactis and led to ensembles of models with different network topologies. In parallel, the parameter optimization algorithm was applied to the same dynamical data upon imposing a pre-specified network topology derived from prior biological knowledge, and the results from both strategies were compared. The results suggest that the proposed method may serve as a powerful exploration tool for testing hypotheses and the design of new experiments.

  15. Monte Carlo and Quasi-Monte Carlo Sampling

    CERN Document Server

    Lemieux, Christiane

    2009-01-01

    Presents essential tools for using quasi-Monte Carlo sampling in practice. This book focuses on issues related to Monte Carlo methods - uniform and non-uniform random number generation, variance reduction techniques. It covers several aspects of quasi-Monte Carlo methods.

  16. A dissipative model of solar system and stability of stationary rotations

    Science.gov (United States)

    Vilke, V. G.

    2009-04-01

    receives the equations describing movements of the centers of mass of planets and their own rotations. In the offered model takes place a dissipation of the energy which source are internally viscous forces of each planet. The system supposes the first integral - the law of preservation of the kinetic moment concerning the centre of mass of system. As a result of deformations of planets in the law of the universal gravitation which has been written down for material points, there are small conservative amendments. The equations of motion describe motions of the centers of mass of planets and their rotation around of the centers of mass in view of the tidal phenomena and the dissipative forces. The connected system of the equations consists of 3 the vector equations of the second order representing the theorems of motion of the center of mass of planets, and the vector equations of the first order determining changes of the own kinetic moments of each planet. Stationary values of full mechanical energy on the variety set in integral of the kinetic moment, correspond to stationary motions - to rotations of system as rigid body with constant angular velocity around of the centre of mass of all system. Angular velocity of stationary rotation is directed along a constant vector of the kinetic moment, and the axis of rotation is the principal central axis of inertia of system. We shall notice, that deformations of planets in stationary motion are constant, as in system of coordinates rotating with constant angular velocity centrifugal forces and forces of gravitational interaction of planets are constant. Stationary configurations of system are determined according to Routh`s technique as stationary points of the changed potential energy submitted by the sum potential energies of centrifugal and gravitational forces. The first variation of the changed potential energy addresses in zero on a stationary configuration. The judgment about stability stationary configurations is based

  17. Engineered Quasi-Phase Matching for Nonlinear Quantum Optics in Waveguides

    Science.gov (United States)

    Van Camp, Mackenzie A.

    Entanglement is the hallmark of quantum mechanics. Quantum entanglement--putting two or more identical particles into a non-factorable state--has been leveraged for applications ranging from quantum computation and encryption to high-precision metrology. Entanglement is a practical engineering resource and a tool for sidestepping certain limitations of classical measurement and communication. Engineered nonlinear optical waveguides are an enabling technology for generating entangled photon pairs and manipulating the state of single photons. This dissertation reports on: i) frequency conversion of single photons from the mid-infrared to 843nm as a tool for incorporating quantum memories in quantum networks, ii) the design, fabrication, and test of a prototype broadband source of polarization and frequency entangled photons; and iii) a roadmap for further investigations of this source, including applications in quantum interferometry and high-precision optical metrology. The devices presented herein are quasi-phase-matched lithium niobate waveguides. Lithium niobate is a second-order nonlinear optical material and can mediate optical energy conversion to different wavelengths. This nonlinear effect is the basis of both quantum frequency conversion and entangled photon generation, and is enhanced by i) confining light in waveguides to increase conversion efficiency, and ii) quasi-phase matching, a technique for engineering the second-order nonlinear response by locally altering the direction of a material's polarization vector. Waveguides are formed by diffusing titanium into a lithium niobate wafer. Quasi-phase matching is achieved by electric field poling, with multiple stages of process development and optimization to fabricate the delicate structures necessary for broadband entangled photon generation. The results presented herein update and optimize past fabrication techniques, demonstrate novel optical devices, and propose future avenues for device development

  18. Evaluation of ODS-AQ stationary phase for use in capillary electrochromatography.

    Science.gov (United States)

    Djordjevic, N M; Fitzpatrick, F; Houdiere, F

    2001-04-01

    The aim of this study was to evaluate the applicability of ODS-AQ packing material as a stationary phase in capillary electrochromatography (CEC). The electroosmotic flow created on an ODS-AQ stationary phase was measured at different mobile phase compositions and at different column temperatures. It was observed that the electroosmotic flow generated in the column increased by 50% when the temperature of the system was raised from 20 degrees C to 60 degrees C, while all other conditions were kept constant. The electroosmotic flow produced by the ODS-AQ stationary phase was found to be comparable to the flow generated in a column packed with Nucleosil bare-silica material. In addition, a set of polar compounds (D-lysergic acid diethylamide derivatives) was utilized to determine the influence of temperature and mobile phase composition on their chromatographic behavior on an ODS-AQ stationary phase in a CEC mode. A linear relationship between the solute retention factor and column temperatures was seen over the temperature range studied (20 degrees C to 60 degrees C). A quadratic function was used to describe the changes in the solute retention factors with variation of acetonitrile concentration in the mobile phase.

  19. Uniqueness of solution to a stationary boundary kinetic problem

    International Nuclear Information System (INIS)

    Zhykharsky, A.V.

    1992-01-01

    The paper treats the question of uniqueness of solution to the boundary kinetic problem. This analysis is based on the accurate solutions to the stationary one-dimensional boundary kinetic problem for the limited plasma system. In the paper a simplified problem statement is used (no account is taken of the external magnetic field, a simplest form of boundary conditions is accepted) which, however, covers all features of the problem considered. Omitting the details of the conclusion we will write a set of Vlasov stationary kinetic equations for the cases of plane, cylindrical and spherical geometry of the problem. (author) 1 ref

  20. Stationary striations due to interaction of two ionization waves in xenon glow discharge

    International Nuclear Information System (INIS)

    Maruyama, T.; Nishina, S.; Kitamura, H.; Itagaki, K.; Mizuochi, H.

    1990-01-01

    Experimental observations on stationary striations in the positive column of xenon discharge are reported. Stationary striations are observed when two ionization waves exist simultaneously in the positive column at low pressure and high current region. These stationary striations are caused by nonlinear interference of two backward ionization waves of which frequencies are either equal or are in the ratio 1:2. The spatial intervals for the striated pattern are equal to the reciprocal of the difference between the wave-numbers of two ionization waves. (orig.)