Feature Issue Introduction: Bio-Optics in Clinical Applications, Nanotechnology, and Drug Discovery

OpenAIRE

Nordstrom, Robert J.; Almutairi, Adah; Hillman, Elizabeth M.C.

2010-01-01

The editors introduce the Biomedical Optics Express feature issue, “Bio-Optics in Clinical Applications, Nanotechnology, and Drug Discovery,” which combines three technical areas from the 2010 Optical Society of America (OSA), Biomedical Optics (BIOMED) Topical Meeting held on 11–14 April in Miami, FL and includes contributions from conference attendees.

BIO-OPTICAL CHARACTERIZATION OF THE DINOFLAGELLATE GYMNODINIUM BREVE AND THE DIATOM THALASSIOSIRA WEISSFLOGII IN OUTDOOR TANKS

Science.gov (United States)

The bio-optical signatures of harmful algal blooms can be used to define ocean color satellite algorithms. We characterized the bio-optical properties of nutrient-replete cultures of the red tide dinoflagellate Gymnodinium breve and the diatom Thalassiosira weissflogii. We cultur...

Bio-optical properties of Porsnagerfjorden (Norway) waters based on data collected in 2014 and 2015

Science.gov (United States)

Białogrodzka, Jagoda; Stramska, Małgorzata; Burska, Dorota; Ficek, Dariusz; Stoń-Egiert, Joanna; Winogradow, Aleksandra

2016-04-01

Oceanographic data collected in the Arctic are valuable in view of the role of this region in the studies on global climate change and the fact that historically the number of in situ measurements is relatively low. Porsangerfjorden, Norway, is an example of oceanic basin with case 2 water according to the optical classification. Optical data from coastal seas are difficult in interpretation because the concentrations of optically important components can be high, variable, and not covarying with each other. Porsanger Fjord can be divided into three basins: inner, middle and outer, where physical and bio-optical properties of water masses differ. We collected optical data and water samples for phytoplankton pigments, dissolved organic matter, particulate (POC) and dissolved (DOC) organic carbon, and particulate inorganic carbon (PIC) during our two summer expeditions in 2014 and 2015. In this presentation we focus on data collected with WETLabs' ac-9 and ac-s spectrophotometers and ECO-Triplet and ECO-Triplet-w fluorometers. Concurrently with in situ optical measurements water samples were collected in situ and soon afterwards they were filtered in the laboratory at the station, stored and transported for further processing in Poland. Our analysis includes 146 of in situ measurements and discrete water samples: 62 of POC, 52 of PIC, 33 of DOC, 68 of dissolved organic matter and 89 of phytoplankton pigments. During our analysis we compare chlorophyll (Chl_a), dissolved organic matter (CDOM) and carbon concentrations with in situ collected inherent optical properties of sea water to find empirical proxies allowing to estimate various water component concentrations from optical data. Application of these proxies to available bio-optical data allowed us to derive spatial distribution of these water constituents and their variability. This work was funded by the Norway Grants (NCBR contract No. 201985, project NORDFLUX).

Animal Botulism Outcomes in the AniBioThreat Project

DEFF Research Database (Denmark)

Woudstra, Cédric; Tevell Åberg, Annica; Skarin, Hanna

2013-01-01

and botulinum neurotoxins are considered potential weapons for bioterrorism and have been included in the Australia Group List of Biological Agents. In 2010 the European Commission (DG Justice, Freedom and Security) funded a 3-year project named AniBioThreat to improve the EU's capacity to counter animal...... new genetic information to better understand the diversity of these Clostridia and develop detection methods targeting both highly specific genetic markers of these Clostridia and the neurotoxins they are able to produce. Several European institutes participating in the AniBioThreat project...

Bermuda Tsunami Forecast Grids for MOST Model

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Bermuda Forecast Model Grids provides bathymetric data strictly for tsunami inundation modeling with the Method of Splitting Tsunami (MOST) model. MOST is a...

Projections for the Production of Bulk Volume Bio-Based Polymers in Europe and Environmental Implications

NARCIS (Netherlands)

Patel, M.K.; Crank, M.

2007-01-01

In this paper we provide an overview of the most important emerging groups of bio-based polymers for bulk volume applications and we discuss market projections for these types of bio-based polymers in the EU, thereby distinguishing between three scenarios. Bio-based polymers are projected to reach a

Determination of optical properties of tissue and other bio-materials

CSIR Research Space (South Africa)

Singh, A

2008-11-01

Full Text Available appears less diffusively scattered. Determination of optical properties of tissue and other bio-materials A SINGH, AE KARSTEN, JS DAM CSIR National Laser Centre, Biophotonics Group PO Box 395, Pretoria, 0001, South Africa Email: ASingh1@csir.co.za K...

Bermuda as an evolutionary life raft for an ancient lineage of endangered lizards.

Directory of Open Access Journals (Sweden)

Matthew C Brandley

Full Text Available Oceanic islands are well known for harboring diverse species assemblages and are frequently the basis of research on adaptive radiation and neoendemism. However, a commonly overlooked role of some islands is their function in preserving ancient lineages that have become extinct everywhere else (paleoendemism. The island archipelago of Bermuda is home to a single species of extant terrestrial vertebrate, the endemic skink Plestiodon (formerly Eumeces longirostris. The presence of this species is surprising because Bermuda is an isolated, relatively young oceanic island approximately 1000 km from the eastern United States. Here, we apply Bayesian phylogenetic analyses using a relaxed molecular clock to demonstrate that the island of Bermuda, although no older than two million years, is home to the only extant representative of one of the earliest mainland North American Plestiodon lineages, which diverged from its closest living relatives 11.5 to 19.8 million years ago. This implies that, within a short geological time frame, mainland North American ancestors of P. longirostris colonized the recently emergent Bermuda and the entire lineage subsequently vanished from the mainland. Thus, our analyses reveal that Bermuda is an example of a "life raft" preserving millions of years of unique evolutionary history, now at the brink of extinction. Threats such as habitat destruction, littering, and non-native species have severely reduced the population size of this highly endangered lizard.

SeaBASS Bio-optical and pigment data collected from 1979-08-22 to 2011-12-14 (NCEI Accession 0086308)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This accession contains SeaWiFS Bio-optical Archive and Storage System (SeaBASS) bio-optical, pigment, and other data collected from 1979-08-22 to 2011-12-14....

Naise võim Bermudas : kubjas kukutati / Allan Espenberg

Index Scriptorium Estoniae

Espenberg, Allan

2003-01-01

Suurbritanniale kuuluva Bermuda saare parlamendivalimised vallandasid sündmuste ahela, mis võivad muuta asumaa poliitikat. Ametist tagandati peaminister Jennifer Meredith Smith ja uueks peaministriks sai senine tööminister William Alexander Scott

Optical assembly of bio-hybrid micro-robots.

Science.gov (United States)

Barroso, Álvaro; Landwerth, Shirin; Woerdemann, Mike; Alpmann, Christina; Buscher, Tim; Becker, Maike; Studer, Armido; Denz, Cornelia

2015-04-01

The combination of micro synthetic structures with bacterial flagella motors represents an actual trend for the construction of self-propelled micro-robots. The development of methods for fabrication of these bacteria-based robots is a first crucial step towards the realization of functional miniature and autonomous moving robots. We present a novel scheme based on optical trapping to fabricate living micro-robots. By using holographic optical tweezers that allow three-dimensional manipulation in real time, we are able to arrange the building blocks that constitute the micro-robot in a defined way. We demonstrate exemplarily that our method enables the controlled assembly of living micro-robots consisting of a rod-shaped prokaryotic bacterium and a single elongated zeolite L crystal, which are used as model of the biological and abiotic components, respectively. We present different proof-of-principle approaches for the site-selective attachment of the bacteria on the particle surface. The propulsion of the optically assembled micro-robot demonstrates the potential of the proposed method as a powerful strategy for the fabrication of bio-hybrid micro-robots.

Vibro-Perception of Optical Bio-Inspired Fiber-Skin.

Science.gov (United States)

Li, Tao; Zhang, Sheng; Lu, Guo-Wei; Sunami, Yuta

2018-05-12

In this research, based on the principle of optical interferometry, the Mach-Zehnder and Optical Phase-locked Loop (OPLL) vibro-perception systems of bio-inspired fiber-skin are designed to mimic the tactile perception of human skin. The fiber-skin is made of the optical fiber embedded in the silicone elastomer. The optical fiber is an instinctive and alternative sensor for tactile perception with high sensitivity and reliability, also low cost and susceptibility to the magnetic interference. The silicone elastomer serves as a substrate with high flexibility and biocompatibility, and the optical fiber core serves as the vibro-perception sensor to detect physical motions like tapping and sliding. According to the experimental results, the designed optical fiber-skin demonstrates the ability to detect the physical motions like tapping and sliding in both the Mach-Zehnder and OPLL vibro-perception systems. For direct contact condition, the OPLL vibro-perception system shows better performance compared with the Mach-Zehnder vibro-perception system. However, the Mach-Zehnder vibro-perception system is preferable to the OPLL system in the indirect contact experiment. In summary, the fiber-skin is validated to have light touch character and excellent repeatability, which is highly-suitable for skin-mimic sensing.

3D visualization of the initial Yersinia ruckeri infection route in rainbow trout (Oncorhynchus mykiss) by optical projection tomography

DEFF Research Database (Denmark)

Otani, Maki; Villumsen, Kasper Rømer; Kragelund Strøm, Helene

2014-01-01

, optical projection tomography (OPT), a novel three-dimensional (3D) bio-imaging technique, was applied. OPT not only enables the visualization of Y. ruckeri on mucosal surfaces but also the 3D spatial distribution in whole organs, without sectioning. Rainbow trout were infected by bath challenge exposure...

Bio-Optics and Bio-Inspired Optical Materials.

Science.gov (United States)

Tadepalli, Sirimuvva; Slocik, Joseph M; Gupta, Maneesh K; Naik, Rajesh R; Singamaneni, Srikanth

2017-10-25

Through the use of the limited materials palette, optimally designed micro- and nanostructures, and tightly regulated processes, nature demonstrates exquisite control of light-matter interactions at various length scales. In fact, control of light-matter interactions is an important element in the evolutionary arms race and has led to highly engineered optical materials and systems. In this review, we present a detailed summary of various optical effects found in nature with a particular emphasis on the materials and optical design aspects responsible for their optical functionality. Using several representative examples, we discuss various optical phenomena, including absorption and transparency, diffraction, interference, reflection and antireflection, scattering, light harvesting, wave guiding and lensing, camouflage, and bioluminescence, that are responsible for the unique optical properties of materials and structures found in nature and biology. Great strides in understanding the design principles adapted by nature have led to a tremendous progress in realizing biomimetic and bioinspired optical materials and photonic devices. We discuss the various micro- and nanofabrication techniques that have been employed for realizing advanced biomimetic optical structures.

On the relationship between satellite-estimated bio-optical and thermal properties in the Gulf of Mexico

Science.gov (United States)

Jolliff, Jason K.; Kindle, John C.; Penta, Bradley; Helber, Robert; Lee, Zhongping; Shulman, Igor; Arnone, Robert; Rowley, Clark D.

2008-03-01

Three years of Sea-viewing Wide Field-of-view Sensor (SeaWiFS) ocean color data were combined with three-dimensional thermal fields generated by the U.S. Navy's Modular Ocean Data Assimilation System (MODAS) in order to examine the interdependencies between bio-optical fields and their relationship to seasonal and mesoscale changes in upper ocean thermal structure. The combined data set suggests that the oceanic boundary layer within the Gulf of Mexico may be broadly defined by two seasonally occurring bio-thermal periods. A winter mixing period, characterized by net heat losses to the atmosphere, deepening of the isothermal layer depth, and annual maxima of satellite-estimated colored detrital matter (CDM) absorption coefficients and surface pigment concentration, was followed by a thermally stratified period characterized by net surface ocean heating, reduced isothermal layer depths, and annual minima in surface bio-optical fields. Variability in the interdependencies of ocean color products was used to diagnose an attendant shift in the size-structure of surface phytoplankton communities as well as identify CDM as the constituent responsible for the majority of blue-light absorption in Gulf of Mexico surface waters. The mesoscale circulation, as resolved by MODAS thermal fields into cold and warm-core eddies, appears to significantly modulate the seasonal bio-optical cycle of CDM absorption and surface pigment concentration. An empirical model was developed to describe CDM absorption as a function of upper ocean thermal energy. The model accounted for nearly half the variance in the satellite-estimate of this bio-optical variable. Large mismatches between the model and satellite data implied episodes of shelf water export to the deep Gulf of Mexico.

Bio-optical water quality dynamics observed from MERIS in Pensacola Bay, Florida

Science.gov (United States)

Observed bio-optical water quality data collected from 2009 to 2011 in Pensacola Bay, Florida were used to develop empirical remote sensing retrieval algorithms for chlorophyll a (Chla), colored dissolved organic matter (CDOM), and suspended particulate matter (SPM). Time-series ...

Bio-optical profiling floats as new observational tools for biogeochemical and ecosystem studies: Potential synergies with ocean color remote sensing

Energy Technology Data Exchange (ETDEWEB)

Claustre, H.; Bishop, J.; Boss, E.; Bernard, S.; Berthon, J.-F.; Coatanoan, C.; Johnson, K.; Lotiker, A.; Ulloa, O.; Perry, M.J.; D' Ortenzio, F.; D' andon, O.H.F.; Uitz, J.

2009-10-01

Profiling floats now represent a mature technology. In parallel with their emergence, the field of miniature, low power bio-optical and biogeochemical sensors is rapidly evolving. Over recent years, the bio-geochemical and bio-optical community has begun to benefit from the increase in observational capacities by developing profiling floats that allow the measurement of key biooptical variables and subsequent products of biogeochemical and ecosystem relevance like Chlorophyll a (Chla), optical backscattering or attenuation coefficients which are proxies of Particulate Organic Carbon (POC), Colored Dissolved Organic Matter (CDOM). Thanks to recent algorithmic improvements, new bio-optical variables such as backscattering coefficient or absorption by CDOM, at present can also be extracted from space observations of ocean color. In the future, an intensification of in situ measurements by bio-optical profiling floats would permit the elaboration of unique 3D/4D bio-optical climatologies, linking surface (remotely detected) properties to their vertical distribution (measured by autonomous platforms), with which key questions in the role of the ocean in climate could be addressed. In this context, the objective of the IOCCG (International Ocean Color Coordinating Group) BIO-Argo working group is to elaborate recommendations in view of a future use of bio-optical profiling floats as part of a network that would include a global array that could be 'Argo-relevant', and specific arrays that would have more focused objectives or regional targets. The overall network, realizing true multi-scale sustained observations of global marine biogeochemistry and biooptics, should satisfy the requirements for validation of ocean color remote sensing as well as the needs of a wider community investigating the impact of global change on biogeochemical cycles and ecosystems. Regarding the global profiling float array, the recommendation is that Chla as well as POC should be the

Wood to Bio-Methane demonstration project in the Netherlands

Energy Technology Data Exchange (ETDEWEB)

Van der Meijden, C.M.; Van der Drift, A.; Rietveld, G. [ECN Biomass and Energy Efficiency, Petten (Netherlands); Koenemann, J.W. [Dahlman Renewable Technology, P.O. Box 438, 3140 AK Maassluis (Netherlands); Sierhuis, W. [HVCgroup, P.O. Box 9199, 1800 GD, Alkmaar (Netherlands)

2013-06-15

The Energy research Centre of the Netherlands (ECN) has developed a biomass gasification technology, called the MILENA technology. The Milena gasification technology has a high cold gas efficiency and high methane yield, making it very suitable for gas engine and turbine applications as well as upgrading of the gas into Bio-Methane. An overall efficiency from biomass to power of over 30% is possible, whereas 70% efficiency is achievable from biomass to gas grid quality methane. HVC Group (situated in Alkmaar, North Holland) is a modern public service waste company. HVC converts waste streams which cannot be recycled into usable forms of energy. HVC has a 75 MWth waste wood boiler in operation which produces heat and electricity, and an anaerobic digester which converts domestic fruit, vegetable and garden waste into Bio-Methane. HVC expects an important role for Bio-Methane in the future and HVC has decided to join ECN with the development, demonstration and implementation of the MILENA Bio-Methane technology. Linked to the Bio-Methane demonstration project is the Netherlands Expertise Centre for Biomass Gasification. The MILENA demonstration project and the Gasification Expert Centre are supported by the following companies and organizations: HVC, TAQA, Gasunie, Dahlman, province of North Holland, the Alkmaar municipality and ECN. In 2010 and 2012 extensive lab-scale and pilot scale tests have been executed by ECN and HVC to proof that the gasification and gas cleaning technology is ready for commercial application. The final step in this test program was a duration test in the 800 kWth MILENA pilot plant coupled to the OLGA tar removal unit. The goal was to show high availability. The result of the test was an availability of the gasifier of 96% and an overall availability (including gas cooling and gas cleaning) of 85%. The results of the duration tests convinced HVC and the other partners that the technology is ready for scale-up. The results produced in the

Primary production calculations for sea ice from bio-optical observations in the Baltic Sea

Directory of Open Access Journals (Sweden)

Susann Müller

2016-09-01

Full Text Available Abstract Bio-optics is a powerful approach for estimating photosynthesis rates, but has seldom been applied to sea ice, where measuring photosynthesis is a challenge. We measured absorption coefficients of chromophoric dissolved organic matter (CDOM, algae, and non-algal particles along with solar radiation, albedo and transmittance at four sea-ice stations in the Gulf of Finland, Baltic Sea. This unique compilation of optical and biological data for Baltic Sea ice was used to build a radiative transfer model describing the light field and the light absorption by algae in 1-cm increments. The maximum quantum yields and photoadaptation of photosynthesis were determined from 14C-incorporation in photosynthetic-irradiance experiments using melted ice. The quantum yields were applied to the radiative transfer model estimating the rate of photosynthesis based on incident solar irradiance measured at 1-min intervals. The calculated depth-integrated mean primary production was 5 mg C m–2 d–1 for the surface layer (0–20 cm ice depth at Station 3 (fast ice and 0.5 mg C m–2 d–1 for the bottom layer (20–57 cm ice depth. Additional calculations were performed for typical sea ice in the area in March using all ice types and a typical light spectrum, resulting in depth-integrated mean primary production rates of 34 and 5.6 mg C m–2 d–1 in surface ice and bottom ice, respectively. These calculated rates were compared to rates determined from 14C incorporation experiments with melted ice incubated in situ. The rate of the calculated photosynthesis and the rates measured in situ at Station 3 were lower than those calculated by the bio-optical algorithm for typical conditions in March in the Gulf of Finland by the bio-optical algorithm. Nevertheless, our study shows the applicability of bio-optics for estimating the photosynthesis of sea-ice algae.

Introducing Magneto-Optical Functions into Soft Materials

Science.gov (United States)

2017-05-03

including organic and bio materials by using magnetic nanomaterials. This final report includes the successful developments of magneto-optical... successful developments of magneto-optical properties in both organic and bio magnetic nanocomposites during the project period of three years...proteins on the photoluminescence of nanodiamond. J. Appl . Phys. 2011, 109 (3), 034704. 7, Xu, H.; Hung, C.E.; Cheng, C.L.; Hu, B., Magneto-electric

pH-dependence of the optical bio-sensor based on DNA-carbon nanotube

International Nuclear Information System (INIS)

Vu Thuy Huong; Quach Kha Quang; Tran Thanh Thuy; Phan Duc Anh; Ngo Van Thanh; Nguyen Ai Viet

2010-01-01

In 2006, Daniel A. Heller et al. [1] demonstrated that carbon nanotubes (CNNTs) wrapped with DNA can be placed inside living cells and detect trace amounts of harmful contaminants using near infrared light. This discovery could lead to new types of optical sensors and biomarkers at the sub cellular level. The working principle of this optical bio-sensor from DNA and CNNTs can be explained by a simple theoretical model which was introduced in [3]. In this paper, the pH-dependence of DNA and the pH-dependence of solution around CNNTs are shown by using data analysis method. By substituting them into the same model, the pH-dependence of DNA-wrapped CNNTs was elicited in this paper. The range of parameters for workable conditions of this bio-sensor was indicated that the solution should have pH from 6 to 9 and the concentration of ions should be more than a critical value. These results are according to the experimental data and the deduction about pH and salt concentration in solution. They are very useful as using such a new bio-sensor like this in living environment. (author)

Molecular characterization of vancomycin-resistant Enterococcus faecium isolates from Bermuda.

Directory of Open Access Journals (Sweden)

Patrick Eberechi Akpaka

Full Text Available Molecular characteristics of vancomycin resistant enterococci isolates from Bermuda Island is currently unknown. This study was conducted to investigate phenotypic and genotypic characteristics of VRE isolates from Bermuda Island using the chromogenic agar, E-tests, polymerase chain reaction (PCR, pulsed-field gel electrophoresis (PFGE and multilocus sequence typing (MLST. Eighteen E. faecium isolates were completely analyzed and were all resistant to vancomycin, susceptible to linezolid and quinupristin/dalfopristin, positive for vanA and esp genes. The MLST analysis confirmed most isolates were of the sequence types linked to clonal complex 17 (CC17 that is widely associated with outbreaks in hospitals. Infection control measures, antibiotic stewardship, and surveillance activities will continue to be a priority in hospital on the Island.

Bio-optical characterization in an ultra-oligotrophic region: the North central Red Sea

KAUST Repository

Kheireddine, Malika; Jones, Burton

2015-01-01

are derived from the concentration and physical properties of suspended particles in the ocean. They provide a simple description of the influence of these particles on the light within the water column. Bio-optical relationships found for ultra

Evaluation of molecular basis of cross reactivity between rye and Bermuda grass pollen allergens.

Science.gov (United States)

Tiwari, Ruby; Bhalla, Prem L; Singh, Mohan B

2009-12-01

Allergenic cross reactivity between the members of the Pooids (Lolium perenne, Phleum pratense, and Poa pratensis) and Chloridoids (Cynodon dactylon and Paspalum notatum) is well established. Studies using crude extracts in the past have demonstrated limited cross reactivity between the Pooids and the Chloridoids suggesting separate diagnosis and therapy. However, little is known regarding the molecular basis for the limited cross reactivity observed between the 2 groups of grasses. The present study was undertaken to gain insights into the molecular basis of cross allergenicity between the major allergens from rye and Bermuda grass pollens. Immunoblot inhibition tests were carried out to determine the specificity of the proteins involved in cross reactivity. Crude pollen extract and bacterially expressed and purified recombinant Lol p 1and Lol p 5 from rye grass were subjected to cross inhibition experiments with crude and purified recombinant Cyn d 1 from Bermuda grass using sera from patients allergic to rye grass pollen. The immunoblot inhibition studies revealed a high degree of cross inhibition between the group 1 allergens. In contrast, a complete lack of inhibition was observed between Bermuda grass group 1 allergen rCyn d 1, and rye grass group 5 allergen rLol p 5. Crude rye grass extract strongly inhibited IgE reactivity to Bermuda grass, whereas crude Bermuda grass pollen extract showed a weaker inhibition. Our data suggests that a possible explanation for the limited cross reactivity between the Pooids and Chloridoids may, in part, be due to the absence of group 5 allergen from Chloridoid grasses. This approach of using purified proteins may be applied to better characterize the cross allergenicity patterns between different grass pollen allergens.

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.

Science.gov (United States)

Prins, Pjotr; Goto, Naohisa; Yates, Andrew; Gautier, Laurent; Willis, Scooter; Fields, Christopher; Katayama, Toshiaki

2012-01-01

Open-source software (OSS) encourages computer programmers to reuse software components written by others. In evolutionary bioinformatics, OSS comes in a broad range of programming languages, including C/C++, Perl, Python, Ruby, Java, and R. To avoid writing the same functionality multiple times for different languages, it is possible to share components by bridging computer languages and Bio* projects, such as BioPerl, Biopython, BioRuby, BioJava, and R/Bioconductor. In this chapter, we compare the two principal approaches for sharing software between different programming languages: either by remote procedure call (RPC) or by sharing a local call stack. RPC provides a language-independent protocol over a network interface; examples are RSOAP and Rserve. The local call stack provides a between-language mapping not over the network interface, but directly in computer memory; examples are R bindings, RPy, and languages sharing the Java Virtual Machine stack. This functionality provides strategies for sharing of software between Bio* projects, which can be exploited more often. Here, we present cross-language examples for sequence translation, and measure throughput of the different options. We compare calling into R through native R, RSOAP, Rserve, and RPy interfaces, with the performance of native BioPerl, Biopython, BioJava, and BioRuby implementations, and with call stack bindings to BioJava and the European Molecular Biology Open Software Suite. In general, call stack approaches outperform native Bio* implementations and these, in turn, outperform RPC-based approaches. To test and compare strategies, we provide a downloadable BioNode image with all examples, tools, and libraries included. The BioNode image can be run on VirtualBox-supported operating systems, including Windows, OSX, and Linux.

Cylindrical optical resonators: fundamental properties and bio-sensing characteristics

Science.gov (United States)

Khozeymeh, Foroogh; Razaghi, Mohammad

2018-04-01

In this paper, detailed theoretical analysis of cylindrical resonators is demonstrated. As illustrated, these kinds of resonators can be used as optical bio-sensing devices. The proposed structure is analyzed using an analytical method based on Lam's approximation. This method is systematic and has simplified the tedious process of whispering-gallery mode (WGM) wavelength analysis in optical cylindrical biosensors. By this method, analysis of higher radial orders of high angular momentum WGMs has been possible. Using closed-form analytical equations, resonance wavelengths of higher radial and angular order WGMs of TE and TM polarization waves are calculated. It is shown that high angular momentum WGMs are more appropriate for bio-sensing applications. Some of the calculations are done using a numerical non-linear Newton method. A perfect match of 99.84% between the analytical and the numerical methods has been achieved. In order to verify the validity of the calculations, Meep simulations based on the finite difference time domain (FDTD) method are performed. In this case, a match of 96.70% between the analytical and FDTD results has been obtained. The analytical predictions are in good agreement with other experimental work (99.99% match). These results validate the proposed analytical modelling for the fast design of optical cylindrical biosensors. It is shown that by extending the proposed two-layer resonator structure analyzing scheme, it is possible to study a three-layer cylindrical resonator structure as well. Moreover, by this method, fast sensitivity optimization in cylindrical resonator-based biosensors has been possible. Sensitivity of the WGM resonances is analyzed as a function of the structural parameters of the cylindrical resonators. Based on the results, fourth radial order WGMs, with a resonator radius of 50 μm, display the most bulk refractive index sensitivity of 41.50 (nm/RIU).

An optical water type framework for selecting and blending retrievals from bio-optical algorithms in lakes and coastal waters

OpenAIRE

Moore, Timothy S.; Dowell, Mark D.; Bradt, Shane; Verdu, Antonio Ruiz

2014-01-01

Bio-optical models are based on relationships between the spectral remote sensing reflectance and optical properties of in-water constituents. The wavelength range where this information can be exploited changes depending on the water characteristics. In low chlorophyll-a waters, the blue/green region of the spectrum is more sensitive to changes in chlorophyll-a concentration, whereas the red/NIR region becomes more important in turbid and/or eutrophic waters. In this work we present an appro...

Biomass gasification to heat, electricity and biofuels. HighBio project publication

Energy Technology Data Exchange (ETDEWEB)

Lassi, U.; Wikman, B. (eds.)

2011-07-01

Renewable energy and the use of biomass in energy production promotes sustainable development and decreases the use of fossil fuels. Biomass, e.g. wood chips can be used in the production of heat and electricity, as well as being used as a biofuel component and novel product for the chemical industry. Efficient utilisation of biomass requires a high level of knowledge and the development of new processes to create a new way of thinking. In this process, international co-operation plays a significant role. The aim of the HighBio project was to produce new information on biomass gasification and the utilisation opportunities of product gas in biofuel and biochemicals production. The project was also aimed at studying utilisation properties of biogasification ashes in distributed energy production. Small-scaled CHP plants can be used for simultaneous heat and power production by gasifying wood chips and by burning energy intensive product gas. Compared with thermal combustion, particulate emissions from gasification are lower, which also contributes to the EU's ever tightening emission legislation. Several small and middle scale companies in the Northern part of Finland and Sweden have worked with biomass gasification, and during the project, the birth of new ones has been seen. In this development stage, researchers of the HighBio project have also been strongly involved. Increased use of renewable energy opens up new possibilities for entrepreneurship and the birth of new companies, especially in rural areas. In order to enable these opportunities, we need research data from the universities, novel innovations, and especially their successful commercialisation. The HighBio project has also contributed to tackling those challenges by arranging research seminars and meetings to companies and other interest groups, as well as by establishing research activities and collaborations. Regional collaboration combined with national and international research networks

The CC-Bio Project: Studying the Effects of Climate Change on Quebec Biodiversity

Directory of Open Access Journals (Sweden)

Luc Vescovi

2010-11-01

Full Text Available Anticipating the effects of climate change on biodiversity is now critical for managing wild species and ecosystems. Climate change is a global driver and thus affects biodiversity globally. However, land-use planners and natural resource managers need regional or even local predictions. This provides scientists with formidable challenges given the poor documentation of biodiversity and its complex relationships with climate. We are approaching this problem in Quebec, Canada, through the CC-Bio Project (http://cc‑bio.uqar.ca/, using a boundary organization as a catalyst for team work involving climate modelers, biologists, naturalists, and biodiversity managers. In this paper we present the CC-Bio Project and its general approach, some preliminary results, the emerging hypothesis of the northern biodiversity paradox (a potential increase of biodiversity in northern ecosystems due to climate change, and an early assessment of the conservation implications generated by our team work.

Genetic ancestry and indigenous heritage in a Native American descendant community in Bermuda.

Science.gov (United States)

Gaieski, Jill B; Owings, Amanda C; Vilar, Miguel G; Dulik, Matthew C; Gaieski, David F; Gittelman, Rachel M; Lindo, John; Gau, Lydia; Schurr, Theodore G

2011-11-01

Discovered in the early 16th century by European colonists, Bermuda is an isolated set of islands located in the mid-Atlantic. Shortly after its discovery, Bermuda became the first English colony to forcibly import its labor by trafficking in enslaved Africans, white ethnic minorities, and indigenous Americans. Oral traditions circulating today among contemporary tribes from the northeastern United States recount these same events, while, in Bermuda, St. David's Islanders consider their histories to be linked to a complex Native American, European, and African past. To investigate the influence of historical events on biological ancestry and native cultural identity, we analyzed genetic variation in 111 members of Bermuda's self-proclaimed St. David's Island Native Community. Our results reveal that the majority of mitochondrial DNA (mtDNA) and Y-chromosome haplotypes are of African and West Eurasian origin. However, unlike other English-speaking New World colonies, most African mtDNA haplotypes appear to derive from central and southeast Africa, reflecting the extent of maritime activities in the region. In light of genealogical and oral historical data from the St. David's community, the low frequency of Native American mtDNA and NRY lineages may reflect the influence of genetic drift, the demographic impact of European colonization, and historical admixture with persons of non-native backgrounds, which began with the settlement of the islands. By comparing the genetic data with genealogical and historical information, we are able to reconstruct the complex history of this Bermudian community, which is unique among New World populations. Copyright © 2011 Wiley-Liss, Inc.

Origin of Bermuda's clay-rich Quaternary paleosols and their paleoclimatic significance

Science.gov (United States)

Herwitz, S.R.; Muhs, D.R.; Prospero, J.M.; Mahan, S.; Vaughn, B.

1996-01-01

Red clayey paleosols that are chiefly the product of aerosolic dust deposition are interbedded in the Quaternary carbonate formations of the Bermuda oceanic island system. These paleosols provide a basis for reconstructing Quaternary atmospheric circulation patterns in the northwestern Atlantic. Geochemical analyses were performed on representative paleosol samples to identify their parent dust source. Fine-grained fractions were analyzed by energy-dispersive X ray fluorescence to determine trace element (Zr, Y, La, Ti, and Nb) concentrations and to derive geochemical signatures based on immobile element ratios. These ratios were compared with geochemical signatures determined for three possible sources of airborne dust: (1) Great Plains loess, (2) Mississippi River Valley loess, and (3) Saharan dust. The Zr/Y and Zr/La ratios provided the clearest distinction between the hypothesized dust sources. The low ratios in the paleosol B horizons most closely resemble Saharan dust in the the two North American loessial source areas could not be clearly detected. Thus Bermuda paleosols have a predominantly Saharan aerosolic dust signature. Saharan dust deposition on Bermuda during successive Quaternary glacial periods is consistent with patterns of general circulation models, which indicate that during glacial maxima the northeast summer trade winds were stronger than at present and reached latitudes higher than 30 ?? N despite lower-than-present sea surface temperatures in the North Atlantic.

Phase shifting white light interferometry using colour CCD for optical metrology and bio-imaging applications

Science.gov (United States)

Upputuri, Paul Kumar; Pramanik, Manojit

2018-02-01

Phase shifting white light interferometry (PSWLI) has been widely used for optical metrology applications because of their precision, reliability, and versatility. White light interferometry using monochrome CCD makes the measurement process slow for metrology applications. WLI integrated with Red-Green-Blue (RGB) CCD camera is finding imaging applications in the fields optical metrology and bio-imaging. Wavelength dependent refractive index profiles of biological samples were computed from colour white light interferograms. In recent years, whole-filed refractive index profiles of red blood cells (RBCs), onion skin, fish cornea, etc. were measured from RGB interferograms. In this paper, we discuss the bio-imaging applications of colour CCD based white light interferometry. The approach makes the measurement faster, easier, cost-effective, and even dynamic by using single fringe analysis methods, for industrial applications.

Spatial-temporal bio-optical classification of dynamic semi-estuarine waters in western North America

Science.gov (United States)

Phillips, Stephen Robert; Costa, Maycira

2017-12-01

The use of standard ocean colour reflectance based algorithms to derive surface chlorophyll may have limited applicability for optically dynamic coastal waters due to the pre-defined coefficients based on global datasets. Reflectance based algorithms adjusted to regional optical water characteristics are a promising alternative. A class-based definition of optically diverse coastal waters was investigated as a first step towards the development of temporal and spatial constrained reflectance based algorithms for optically variable coastal waters. A large set of bio-optical data were collected as part of five research cruises and bi-weekly trips aboard a ship of opportunity in the west coast of Canada, to assess the spatial and temporal variability of above-water reflectance in this contrasted coastal environment. To accomplish this, in situ biophysical and optical measurements were collected in conjunction with above-water hyperspectral remote sensing reflectance (Rrs) at 145 stations. The concentrations of measured biophysical data varied considerably; chlorophyll a (Chla) (mean = 1.64, range: 0.10-7.20 μg l-1), total suspended matter (TSM) (3.09, 0.82-20.69 mg l-1), and absorption by chromophoric dissolved organic matter (CDOM) (acdom(443 nm)) (0.525, 0.007-3.072 m-1), thus representing the spatio-temporal variability of the Salish Sea. Optically, a similar large range was also found; particulate scattering (bp(650 nm)) (1.316, 0.250-7.450 m-1), particulate backscattering (bbp(650 nm)) (0.022, 0.005-0.097 m-1), total beam attenuation coefficient (ct(650)) (1.675, 0.371-9.537 m-1) and particulate absorption coefficient (ap(650 nm)) (0.345, 0.048-2.020 m-1). An empirical orthogonal function (EOF) analysis revealed that Rrs variability was highly correlated to bp (r = 0.90), bbp (r = 0.82) and concentration of TSM (r = 0.80), which highlighted the dominant role of water turbidity in this region. Hierarchical clustering analysis was applied to the normalized Rrs

Optical bio-chemical sensors on SNOW ring resonators

Science.gov (United States)

Khorasaninejad, Mohammadreza; Clarke, Nigel; Anantram, M. P.; Singh Saini, Simarjeet

2011-08-01

In this paper, we propose and analyze novel ring resonator based bio-chemical sensors on silicon nanowire optical waveguide (SNOW) and show that the sensitivity of the sensors can be increased by an order of magnitude as compared to silicon-on-insulator based ring resonators while maintaining high index contrast and compact devices. The core of the waveguide is hollow and allows for introduction of biomaterial in the center of the mode, thereby increasing the sensitivity of detection. A sensitivity of 243 nm/refractive index unit (RIU) is achieved for a change in bulk refractive index. For surface attachment, the sensor is able to detect monolayer attachments as small as 1 Å on the surface of the silicon nanowires.

BioTfueL Project: Targeting the Development of Second-Generation Bio-diesel and Bio-jet Fuels

International Nuclear Information System (INIS)

Viguie, J.C.; Ullrich, N.; Porot, P.; Bournay, L.; Hecquet, M.; Rousseau, J.

2013-01-01

2. generation biofuels will have an important part to take in the energy transition as far as fuels are concerned. Using non edible biomass, they will avoid any direct competition with food usage. Within second generation biofuels, the BTL route consists in the production of middle distillates (Diesel and jet fuel) via gasification and Fischer-Tropsch (FT) synthesis. These fuels are called 'drop in' fuels; this means that to be used they technically do not request any modification in the vehicle whatever the blending rate with conventional fuels. This route is currently at the pre-industrial phase where demonstration is required. This article presents the BioTfueL project which has been created by Axens, CEA, IFP Energies Nouvelles, Sofiproteol, ThyssenKrupp Uhde and Total. This project is focused on the original concept of co-processing (biomass can be gasified together with fossil feedstock) and proposes to develop and demonstrate a full process chain to be commercialized worldwide via licensing. (authors)

On the Relationship Between Satellite-Estimated Bio-Optical and Thermal Properties in the Gulf of Mexico

National Research Council Canada - National Science Library

Jolliff, Jason K; Kindle, John C; Penta, Bradley; Helber, Robert; Lee, Zhongping; Shulman, Igor G; Amone, Robert A; Rowley, Clark D

2008-01-01

.... Navy's Modular Ocean Data Assimilation System (MODAS) in order to examine the interdependencies between bio-optical fields and their relationship to seasonal and mesoscale changes in upper ocean thermal structure...

A bio-optical model suitable for use in forward and inverse coupled atmosphere-ocean radiative transfer models

International Nuclear Information System (INIS)

Zhang Kexin; Li Wei; Eide, Hans; Stamnes, Knut

2007-01-01

A simple, yet complete bio-optical model for the inherent optical properties (IOPs) of oceanic waters is developed. This bio-optical model is specifically designed for use in comprehensive, multiple scattering radiative transfer models for the coupled atmosphere-ocean system. Such models can be used to construct next-generation algorithms for simultaneous retrieval of aerosol and marine parameters. The computed remote sensing reflectance R rs (λ) is validated against field measurements of R rs (λ) compiled in the SeaBASS data base together with simultaneous chlorophyll concentrations (C) ranging from 0.03 to 100mgm -3 . This connection between R rs and C is used to construct a chlorophyll concentration retrieval algorithm that yields reliable results for a large range of chlorophyll concentrations. The overall performance of a MODIS/VIIRS chlorophyll concentration retrieval algorithm is found to be less satisfactory

Optic issues in ongoing ERL projects

International Nuclear Information System (INIS)

Smith, S.L.; Muratori, B.D.; Owen, H.L.; Hoffstaetter, G.H.; Litvinenko, V.N.; Ben-Zvi, I.; Bai, M.; Beebe-Wang, J.; Blaskiewicz, M.; Calaga, R.; Fischer, W.; Chang, X.Y.; Kayran, D.; Kewisch, J.; MacKay, W.W.; Montag, C.; Parker, B.; Ptitsyn, V.; Roser, T.; Ruggiero, A.; Satogata, T.; Surrow, B.; Tepikian, S.; Trbojevic, D.; Yakimenko, V.; Zhang, S.Y.; Piot, Ph.

2006-01-01

A wide range of optics issues for energy recovery linac (ERL)-based projects are illustrated through the presentation of ongoing projects covering both light sources, at Cornell and Daresbury and high energy and nuclear physics accelerators at the Brookhaven National Laboratory. This presented range of projects demonstrates how the different designs teams see the challenges of studying and solving optics issues for their particular project's ERLs, with studies appropriate to the stage of maturity of the project. Finally, as an illustration of the complexity and detail behind a single aspect of ERL optics design we present an overview of the highly important generic topic of longitudinal phase space evolution in ERLs

Data harmonization and federated analysis of population-based studies : the BioSHaRE project

NARCIS (Netherlands)

Doiron, Dany; Burton, Paul; Marcon, Yannick; Gaye, Amadou; Wolffenbuttel, Bruce H R; Perola, Markus; Stolk, Ronald P; Foco, Luisa; Minelli, Cosetta; Waldenberger, Melanie; Holle, Rolf; Kvaløy, Kirsti; Hillege, Hans L; Tassé, Anne-Marie; Ferretti, Vincent; Fortier, Isabel

2013-01-01

ABSTRACTS BACKGROUND: Individual-level data pooling of large population-based studies across research centres in international research projects faces many hurdles. The BioSHaRE (Biobank Standardisation and Harmonisation for Research Excellence in the European Union) project aims to address these

Efficacy of saccharides bio-template on structural, morphological, optical and antibacterial property of ZnO nanoparticles.

Science.gov (United States)

Dhanalakshmi, A; Palanimurugan, A; Natarajan, B

2018-09-01

Mono, di and polysaccharides of glucose (C 6 H 12 O 6 ), sucrose (C 12 H 24 O 12 ) and starch (C 6 H 12 O 6 ) n bio-template ZnO nanoparticles (NPs) has prepared by chemical precipitation method. Saccharides bio-template ZnO (SBts-ZnO) NPs were efficiently prepared for their structural and optical properties were examined by using XRD, FE-SEM, AFM, FTIR, UV and PL techniques. All the samples are polycrystalline nature with a preferential orientation depending on the (1 0 1) plane. The reduction of crystalline size by utilizing glucose, sucrose and starch bio-template of ZnO NPs. FE-SEM images revealed that the spherical and nano-rods like morphologies for ZnO and SBts-ZnO NPs respectively. AFM recorded images shows spherical features that confirmed and also the morphological changes were noticed with the addition of polymers. Interaction of bio-templated saccharides (glucose G 1 , sucrose S 2 & starch S n ) molecules was proved by FTIR study. Optical absorbance and emission behaviours were investigated using UV-Vis and photoluminescence techniques. The antibacterial study revealed that SBts-ZnO have excellent antibacterial effect than ZnO. The S n -ZnO sample has potent antibacterial activity against the Proteus vulgaris followed by Klebsiella pneumoniae, Escherichia coli and Staphylococcus aureus. Copyright © 2018 Elsevier B.V. All rights reserved.

Bio-optical profiling floats as new observational tools for biogeochemical and ecosystem studies: Potential synergies with ocean color remote sensing

CSIR Research Space (South Africa)

Claustre, H

2009-09-01

Full Text Available Color Coordinating Group) BIO-Argo working group is to elaborate recommendations in view of a future use of bio-optical profiling floats as part of a network that would include a global array that could be "Argo-relevant", and specific arrays that would...

Elevated temperatures and bleaching on a high latitude coral reef: the 1988 Bermuda event

Science.gov (United States)

Cook, Clayton B.; Logan, Alan; Ward, Jack; Luckhurst, Brian; Berg, Carl J.

1990-03-01

Sea temperatures were normal in Bermuda during 1987, when Bermuda escaped the episodes of coral bleaching which were prevalent throughout the Caribbean region. Survey transecs in 1988 on 4 6 m reefs located on the rim margin and on a lagoonal patch reef revealed bleaching only of zoanthids between May and July. Transect and tow surveys in August and September revealed bleaching of several coral species; Millepora alcicornis on rim reefs was the most extensively affected. The frequency of bleaching in this species, Montastrea annularis and perhaps Diploria labyrinthiformis was significantly higher on outer reefs than on inshore reefs. This bleaching period coincided with the longest period of elevated sea temperatures in Bermuda in 38 years (28.9 30.9°C inshore, >28° offshore). By December, when temperatures had returned to normal, bleaching of seleractinians continued, but bleaching of M. alcicornis on the outer reefs was greatly reduced. Our observations suggest that corals which normally experience wide temperature ranges are less sensitive to thermal stress, and that high-latitude reef corals are sensitive to elevated temperatures which are within the normal thermal range of corals at lower latitudes.

Fiber-Optic Bio-sniffer (Biochemical Gas Sensor) Using Reverse Reaction of Alcohol Dehydrogenase for Exhaled Acetaldehyde.

Science.gov (United States)

Iitani, Kenta; Chien, Po-Jen; Suzuki, Takuma; Toma, Koji; Arakawa, Takahiro; Iwasaki, Yasuhiko; Mitsubayashi, Kohji

2018-02-23

Volatile organic compounds (VOCs) exhaled in breath have huge potential as indicators of diseases and metabolisms. Application of breath analysis for disease screening and metabolism assessment is expected since breath samples can be noninvasively collected and measured. In this research, a highly sensitive and selective biochemical gas sensor (bio-sniffer) for gaseous acetaldehyde (AcH) was developed. In the AcH bio-sniffer, a reverse reaction of alcohol dehydrogenase (ADH) was employed for reducing AcH to ethanol and simultaneously consuming a coenzyme, reduced form of nicotinamide adenine dinucleotide (NADH). The concentration of AcH can be quantified by fluorescence detection of NADH that was consumed by reverse reaction of ADH. The AcH bio-sniffer was composed of an ultraviolet light-emitting diode (UV-LED) as an excitation light source, a photomultiplier tube (PMT) as a fluorescence detector, and an optical fiber probe, and these three components were connected with a bifurcated optical fiber. A gas-sensing region of the fiber probe was developed with a flow-cell and an ADH-immobilized membrane. In the experiment, after optimization of the enzyme reaction conditions, the selectivity and dynamic range of the AcH bio-sniffer were investigated. The AcH bio-sniffer showed a short measurement time (within 2 min) and a broad dynamic range for determination of gaseous AcH, 0.02-10 ppm, which encompassed a typical AcH concentration in exhaled breath (1.2-6.0 ppm). Also, the AcH bio-sniffer exhibited a high selectivity to gaseous AcH based on the specificity of ADH. The sensor outputs were observed only from AcH-contained standard gaseous samples. Finally, the AcH bio-sniffer was applied to measure the concentration of AcH in exhaled breath from healthy subjects after ingestion of alcohol. As a result, a significant difference of AcH concentration between subjects with different aldehyde dehydrogenase type 2 (ALDH2) phenotypes was observed. The AcH bio-sniffer can be

Oceanographic profile temperature, oxygen, nitrate+nitrite and other measurements collected using bottle from various platforms in the North Atlantic ocean from 1988 to 2001 (NODC Accession 0000990)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Profile data collected as part of the Bermuda-Atlantic Time Series Study (BATS) from Bermuda Institute of Ocean Sciences (BIOS; formerly BBSR)

BERMUDA-1DG: a one-dimensional photon transport code

International Nuclear Information System (INIS)

Suzuki, Tomoo; Hasegawa, Akira; Nakashima, Hiroshi; Kaneko, Kunio.

1984-10-01

A one-dimensional photon transport code BERMUDA-1DG has been developed for spherical and infinite slab geometries. The purpose of development is to equip the function of gamma rays calculation for the BERMUDA code system, which was developed by 1983 only for neutron transport calculation as a preliminary version. A group constants library has been prepared for 30 nuclides, and it now consists of the 36-group total cross sections and secondary gamma ray yields by the 120-group neutron flux. For the Compton scattering, group-angle transfer matrices are accurately obtained by integrating the Klein-Nishina formula taking into account the energy and scattering angle correlation. The pair production cross sections are now calculated in the code from atomic number and midenergy of each group. To obtain angular flux distribution, the transport equation is solved in the same way as in case of neutron, using the direct integration method in a multigroup model. Both of an independent gamma ray source problem and a neutron-gamma source problem are possible to be solved. This report is written as a user's manual with a brief description of the calculational method. (author)

Forecasting the Ocean’s Optical Environment: Development of the BioCast System

Science.gov (United States)

2014-09-01

Gulf of Mexico (data not shown). Additional advancements in ocean optical forecasting will also result from the integration of BioCast with other...uniformed sailors and marines would have been rather conspicuous against the turbid gray waves marking the entryway to the riotous North Sea. Two...Detection of underwater mines with airborne, towed, or autonomous under- water platforms can be severely impeded by sustained water column turbidity

A molecular evaluation of the Liagoraceae sensu lato (Nemaliales, Rhodophyta) in Bermuda including Liagora nesophila sp. nov. and Yamadaella grassyi sp. nov.

Science.gov (United States)

Popolizio, Thea R; Schneider, Craig W; Lane, Christopher E

2015-08-01

We have undertaken a comprehensive, molecular-assisted alpha-taxonomic examination of the rhodophyte family Liagoraceae sensu lato, a group that has not previously been targeted for molecular studies in the western Atlantic. Sequence data from three molecular markers indicate that in Bermuda alone there are 10 species in nine different genera. These include the addition of three genera to the flora - Hommersandiophycus, Trichogloeopsis, and Yamadaella. Liagora pectinata, a species with a type locality in Bermuda, is phylogenetically allied with Indo-Pacific species of Hommersandiophycus, and the species historically reported as L. ceranoides for the islands is morphologically and genetically distinct from that taxon, and is herein described as L. nesophila sp. nov. Molecular sequence data have also uncovered the Indo-Pacific L. mannarensis in Bermuda, a long-distance new western Atlantic record. DNA sequences of Trichogloeopsis pedicellata from the type locality (Bahamas) match with local specimens demonstrating its presence in Bermuda. We described Yamadaella grassyi sp. nov. from Bermuda, a species phylogenetically and morphologically distinct from the generitype, Y. caenomyce of the Indo-Pacific. Our data also indicated a single species each of Ganonema, Gloiocallis, Helminthocladia, Titanophycus, and Trichogloea in the flora. © 2015 Phycological Society of America.

Synthesis and Characterization of PEDOT Derivative with Carboxyl Group and Its Chemo/Bio Sensing Application as Nanocomposite, Immobilized Biological and Enhanced Optical Materials

International Nuclear Information System (INIS)

Zhang, Long; Wen, Yangping; Yao, Yuanyuan; Xu, Jingkun; Duan, Xuemin; Zhang, Ge

2014-01-01

Graphical abstract: Electropolymerization of C4-EDOT-COOH and corresponding polymer's sensing application for environmental, pharmaceutical, biology and food. -- Highlights: •C4-EDOT-COOH monomer with good solubility in water was synthesized by an efficient five-step route. •That acidic conditions were favorable for the electropolymerization of C4-EDOT-COOH. •The resulting high-quality polymer film can be employed for the fabrication of chemo/bio-sensors and optical sensors. •These as-prepared sensors can be applied to the simple, fast and sensitive detection of different analytes. -- Abstract: Various electrochemical chemo/bio-sensors and optical sensors are facilely explored for the sensitive determination of biomolecules, drug molecules, environmental pollutants, and metal ions using a carboxylic-functionalized poly(3,4-ethylenedioxythiophene) derivative (PC4), which is easily obtained by the direct electropolymerization of a water-soluble 4-((2,3-dihydrothieno[3,4-b][1,4] dioxin-2-yl) methoxy)-4-oxobutanoic acid (C4-EDOT-COOH) monomer in a microemulsion system. The effect of different pH values on the electropolymerization of C4-EDOT-COOH monomer is investigated, and the as-prepared PC4 film is characterized by electrochemical method, infrared spectrum, and scanning electron microscope. The resulting high-quality PC4 film as a sensing material not only can combine with various biologically active species via covalent linkage and inorganic materials via layer-by-layer self-assembly for the construction of electrochemical chemo/bio-sensors, but also excellent optical performance of PC4 can be employed for the fabrication of optical sensors. These as-prepared chemo/bio-sensors can be applied to the simple, fast and sensitive detection of environmental pollutants, pharmaceuticals, hazardous substances, and biological active substance and nutrients present in food by means of electrochemistry, ultraviolet and fluorescence spectroscopy. Satisfactory results

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4, Volume IV: Inherent Optical Properties: Instruments, Characterizations, Field Measurements and Data Analysis Protocols

Science.gov (United States)

Mueller, J. L.; Fargion, G. S.; McClain, C. R. (Editor); Pegau, S.; Zanefeld, J. R. V.; Mitchell, B. G.; Kahru, M.; Wieland, J.; Stramska, M.

2003-01-01

This document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparision and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. The document is organized into 6 separate volumes as Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4. Volume I: Introduction, Background, and Conventions; Volume II: Instrument Specifications, Characterization and Calibration; Volume III: Radiometric Measurements and Data Analysis Methods; Volume IV: Inherent Optical Properties: Instruments, Characterization, Field Measurements and Data Analysis Protocols; Volume V: Biogeochemical and Bio-Optical Measurements and Data Analysis Methods; Volume VI: Special Topics in Ocean Optics Protocols and Appendices. The earlier version of Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 3 is entirely superseded by the six volumes of Revision 4 listed above.

Indole-diterpenes and ergot alkaloids in Cynodon dactylon (Bermuda grass) infected with Claviceps cynodontis from an outbreak of tremors in cattle.

Science.gov (United States)

Uhlig, Silvio; Botha, Christo J; Vrålstad, Trude; Rolén, Elin; Miles, Christopher O

2009-12-09

Tremorgenic syndromes in mammals are commonly associated with indole-diterpenoid alkaloids of fungal origin. Cattle are sometimes affected by tremors (also called "staggers") when they graze on toxic grass pastures, and Bermuda grass ( Cynodon dactylon , kweek) has been known to be associated with tremors for several decades. This study reports the identification of paspalitrems and paspaline-like indole-diterpenes in the seedheads of Claviceps cynodontis -infected Bermuda grass collected from a pasture that had caused a staggers syndrome in cattle in South Africa and thereby links the condition to specific mycotoxins. The highest concentration (about 150 mg/kg) was found for paspalitrem B. Ergonovine and ergine (lysergic acid amide), together with their C-8 epimers, were found to co-occur with the indole-diterpenes at concentrations of about 10 microg/kg. The indole-diterpene profile of the extract from the ergotized Bermuda grass was similar to that of Claviceps paspali sclerotia. However, the C. paspali sclerotia contained in addition agroclavine and elymoclavine. This is the first study linking tremors associated with grazing of Bermuda grass to specific tremorgenic indole-diterpenoid mycotoxins.

Ergot fungus Claviceps cynodontis found on Bermuda grass (Cynodon dactylon) in the Americas

Czech Academy of Sciences Publication Activity Database

Pažoutová, Sylvie; Odvody, G.; Frederickson, D.E.

2005-01-01

Roč. 27, - (2005), s. 1-6 ISSN 0706-0661 Institutional research plan: CEZ:AV0Z5020903 Keywords : claviceps cynodon tis * ergot * bermuda grass Subject RIV: EE - Microbiology, Virology Impact factor: 1.066, year: 2005

Bio-optofluidics and biophotonics at the cellular level

DEFF Research Database (Denmark)

Bañas, Andrew Rafael; Palima, Darwin; Tauro, Sandeep

2012-01-01

We present ongoing research and development activities for constructing a compact next generation BioPhotonics Workstation and a Bio-optofluidic Cell Sorter (cell-BOCS) for all-optical micro-manipulation platforms utilizing low numerical aperture beam geometries. Unlike conventional high NA optical...

Projective measurements in quantum and classical optical systems

CSIR Research Space (South Africa)

Roux, FS

2014-09-01

Full Text Available equally well to both classical and quantum optical systems. A projective measurement, in the context of quantum mechanics, is understood to be the process where a projection operator operates on some input state. Often this projection operator is composed...) Projective measurements in quantum and classical optical systems Filippus S. Roux* and Yingwen Zhang CSIR National Laser Centre, P.O. Box 395, Pretoria 0001, South Africa (Received 3 July 2014; published 22 September 2014) Experimental setups for the optical...

Utilizing social media for informal ocean conservation and education: The BioOceanography Project

Science.gov (United States)

Payette, J.

2016-02-01

Science communication through the use of social media is a rapidly evolving and growing pursuit in academic and scientific circles. Online tools and social media are being used in not only scientific communication but also scientific publication, education, and outreach. Standards and usage of social media as well as other online tools for communication, networking, outreach, and publication are always in development. Caution and a conservative attitude towards these novel "Science 2.0" tools is understandable because of their rapidly changing nature and the lack of professional standards for using them. However there are some key benefits and unique ways social media, online systems, and other Open or Open Source technologies, software, and "Science 2.0" tools can be utilized for academic purposes such as education and outreach. Diverse efforts for ocean conservation and education will continue to utilize social media for a variety of purposes. The BioOceanography project is an informal communication, education, outreach, and conservation initiative created for enhancing knowledge related to Oceanography and Marine Science with an unbiased yet conservation-minded approach and in an Open Source format. The BioOceanography project is ongoing and still evolving, but has already contributed to ocean education and conservation communication in key ways through a concerted web presence since 2013, including a curated Twitter account @_Oceanography and BioOceanography blog style website. Social media tools like those used in this project, if used properly can be highly effective and valuable for encouraging students, networking with researchers, and educating the general public in Oceanography.

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies

DEFF Research Database (Denmark)

Prins, Pjotr; Goto, Naohisa; Yates, Andrew

2012-01-01

Open-source software (OSS) encourages computer programmers to reuse software components written by others. In evolutionary bioinformatics, OSS comes in a broad range of programming languages, including C/C++, Perl, Python, Ruby, Java, and R. To avoid writing the same functionality multiple times...... for different languages, it is possible to share components by bridging computer languages and Bio* projects, such as BioPerl, Biopython, BioRuby, BioJava, and R/Bioconductor. In this chapter, we compare the two principal approaches for sharing software between different programming languages: either by remote...... procedure call (RPC) or by sharing a local call stack. RPC provides a language-independent protocol over a network interface; examples are RSOAP and Rserve. The local call stack provides a between-language mapping not over the network interface, but directly in computer memory; examples are R bindings, RPy...

Optimizing the bio-optical algorithm for estimating chlorophyll-a and phycocyanin concentrations in inland waters in Korea

Science.gov (United States)

Several bio-optical algorithms were developed to estimate the chlorophyll-a (Chl-a) and phycocyanin (PC) concentrations in inland waters. This study aimed at identifying the influence of the algorithm parameters and wavelength bands on output variables and searching optimal parameter values. The opt...

Bio digester : anaerobic methanogenesis

NARCIS (Netherlands)

Bullema, Marten; Hulzen, Hans; Keizer, Melvin; Pruisscher, Gerlof; Smint, Martin; Vincent, Helene

2014-01-01

As part of the theme 13 and 14, our group have to realize a project in the field of the renewable energy. This project consist of the design of a bio-digester for the canteen of Zernikeplein. Gert Hofstede is our client. To produce energy, a bio-digester uses the anaerobic digestion, which is made

Optical projects in the Clinic program at Harvey Mudd College

Science.gov (United States)

Yang, Q.

2017-08-01

Clinic program is the senior capstone program at Harvey Mudd College (HMC). Multidisciplinary and industry-sponsored projects allow a team of students to solve a real-world problem over one academic year. Over its 50 plus years, Clinic program has completed numerous optics related projects. This report gives an overview of the Clinic program, reviews recent optical projects and discusses how this program supports the learning of the HMC engineering students. A few sample optical projects with more details are presented to provide an insight of what challenges that undergraduates can overcome. Students achieve learning within the optics discipline and the related engineering disciplines. The experiences in these optical projects indicate the great potential to bringing optical hands-on projects into the undergraduate level. Because of the general engineering curriculum at HMC, these projects often work the best with a multidisciplinary nature even if the core of the project is optically focused. Students gain leadership training, oral and written communication skills and experiences in team work. Close relationship with the sponsor liaisons allows for the students to gain skills in professional conduct, management of tight schedule and a specified budget, and it well prepares the students to their engineering practice. Optical projects have their own sets of specific challenges, so it needs to be chosen properly to match the undergraduate skill sets such as those of HMC engineering students.

Sharing Data to Build a Medical Information Commons: From Bermuda to the Global Alliance.

Science.gov (United States)

Cook-Deegan, Robert; Ankeny, Rachel A; Maxson Jones, Kathryn

2017-08-31

The Human Genome Project modeled its open science ethos on nematode biology, most famously through daily release of DNA sequence data based on the 1996 Bermuda Principles. That open science philosophy persists, but daily, unfettered release of data has had to adapt to constraints occasioned by the use of data from individual people, broader use of data not only by scientists but also by clinicians and individuals, the global reach of genomic applications and diverse national privacy and research ethics laws, and the rising prominence of a diverse commercial genomics sector. The Global Alliance for Genomics and Health was established to enable the data sharing that is essential for making meaning of genomic variation. Data-sharing policies and practices will continue to evolve as researchers, health professionals, and individuals strive to construct a global medical and scientific information commons.

Nano-Bio Quantum Technology for Device-Specific Materials

Science.gov (United States)

Choi, Sang H.

2009-01-01

The areas discussed are still under development: I. Nano structured materials for TE applications a) SiGe and Be.Te; b) Nano particles and nanoshells. II. Quantum technology for optical devices: a) Quantum apertures; b) Smart optical materials; c) Micro spectrometer. III. Bio-template oriented materials: a) Bionanobattery; b) Bio-fuel cells; c) Energetic materials.

ENZYMATIC HYDROLYSIS OF SWITCHGRASS AND COASTAL BERMUDA GRASS PRETREATED USING DIFFERENT CHEMICAL METHODS

Directory of Open Access Journals (Sweden)

Jiele Xu

2011-06-01

Full Text Available To investigate the effects of biomass feedstock and pretreatment method on the enzyme requirement during hydrolysis, swichgrass and coastal Bermuda grass pretreated using H2SO4, NaOH, and Ca(OH2 at the optimal conditions were subjected to enzymatic hydrolysis using two enzyme combinations: NS 50013 + NS 50010 and Cellic CTec + Cellic HTec. The enzyme loadings were optimized, and correlations between feedstock property, pretreatment strategy, and enzyme usage were evaluated. The results show that pretreatment methods resulting in greater lignin contents in the pretreated biomass were generally associated with higher enzyme requirements. More sugars could be recovered from alkaline-pretreated biomass during enzymatic hydrolysis due to the better carbohydrate preservation achieved at mild pretreatment temperatures. The cellulase enzyme, Cellic CTec, was more efficient in catalyzing the hydrolysis of coastal Bermuda grass, a feedstock more digestible than the pretreated swichgrass, following pretreatment with NaOH or Ca(OH2.

Naval Research Laboratory Ecological -- Photochemical -- Bio-optical--Numerical Experiment (Neptune) Version 1: A Portable, Flexible Modeling Environment Designed to Resolve Time-dependent Feedbacks Between Upper Ocean Ecology, Photochemistry, and Optics

National Research Council Canada - National Science Library

Jolliff, Jason K; Kindle, John C

2007-01-01

A modeling system has been constructed that combines ecological element cycling, photochemical processes, and bio-optical processes into a single simulation that may be coupled to hydrodynamic models...

Laser-optical methods and systems of computer-automated investigation of bio-objects (plants, seeds, food products, and others)

Science.gov (United States)

Lisker, Joseph S.

1999-01-01

A new conception of the scientific problem of information exchange in the system plant-man-environment is developed. The laser-optical methods and the system are described which allow computer automated investigation of bio-objects without damaging their vital function. The results of investigation of optical-physiological features of plants and seeds are presented. The effects of chlorophyll well and IR beg are discovered for plants and also the effects os water pumping and protein transformations are shown for seeds. The perspectives of the use of the optical methods and equipment suggested to solve scientific problems of agriculture are discussed.

Clinical application of bio ceramics

Energy Technology Data Exchange (ETDEWEB)

Anu, Sharma, E-mail: issaranu@gmail.com; Gayatri, Sharma, E-mail: sharmagayatri@gmail.com [Department of Chemistry, Govt. College of Engineering & Technology, Bikaner, Rajasthan (India)

2016-05-06

Ceramics are the inorganic crystalline material. These are used in various field such as biomedical, electrical, electronics, aerospace, automotive and optical etc. Bio ceramics are the one of the most active areas of research. Bio ceramics are the ceramics which are biocompatible. The unique properties of bio ceramics make them an attractive option for medical applications and offer some potential advantages over other materials. During the past three decades, a number of major advances have been made in the field of bio ceramics. This review focuses on the use of these materials in variety of clinical scenarios.

Clinical application of bio ceramics

International Nuclear Information System (INIS)

Anu, Sharma; Gayatri, Sharma

2016-01-01

Ceramics are the inorganic crystalline material. These are used in various field such as biomedical, electrical, electronics, aerospace, automotive and optical etc. Bio ceramics are the one of the most active areas of research. Bio ceramics are the ceramics which are biocompatible. The unique properties of bio ceramics make them an attractive option for medical applications and offer some potential advantages over other materials. During the past three decades, a number of major advances have been made in the field of bio ceramics. This review focuses on the use of these materials in variety of clinical scenarios.

Assessing the Need for an On-Line Educational Module for Volunteer Leaders on Bio-Security in Washington State 4-H Livestock Projects

Science.gov (United States)

Stevenson, Jill L.; Moore, Dale A.; Newman, Jerry; Schmidt, Janet L.; Smith, Sarah M.; Smith, Jean; Kerr, Susan; Wallace, Michael; BoyEs, Pat

2011-01-01

4-H livestock projects present disease transmission risks that can be reduced by the use of bio-security practices. The responsibility of teaching bio-security to youth belongs primarily to volunteer leaders, who may not be aware of the importance of these practices. A needs assessment for an online educational module about bio-security revealed…

Singular Strategic Project on bio climatic architecture and solar cooling (PSE-ARFRISOL); Proyecto Singular Estrategico sobre arquitectura bioclimatica y frio solar (PSE-ARFRISOL)

Energy Technology Data Exchange (ETDEWEB)

Heras Celemin, M. R.

2008-07-01

The R and D activities for the scientific-technological singular strategic Project on Bio climatic Architecture and Solar Cooling PSE-ARFRISOL are being carried out from November 2005 to December 2010. This project aims to demonstrate that bio climatic architecture and low-temperature solar energy are the appropriate basic elements for climatization of future buildings. (Author) 12 refs.

Surface chemistry manipulation of gold nanorods preserves optical properties for bio-imaging applications

Energy Technology Data Exchange (ETDEWEB)

Polito, Anthony B.; Maurer-Gardner, Elizabeth I.; Hussain, Saber M., E-mail: saber.hussain@us.af.mil [Air Force Research Laboratory, Molecular Bioeffects Branch, Bioeffects Division, Human Effectiveness Directorate (United States)

2015-12-15

Due to their anisotropic shape, gold nanorods (GNRs) possess a number of advantages for biosystem use including, enhanced surface area and tunable optical properties within the near-infrared (NIR) region. However, cetyl trimethylammonium bromide-related cytotoxicity, overall poor cellular uptake following surface chemistry modifications, and loss of NIR optical properties due to material intracellular aggregation in combination remain as obstacles for nanobased biomedical GNR applications. In this article, we report that tannic acid-coated 11-mercaptoundecyl trimethylammonium bromide (MTAB) GNRs (MTAB-TA) show no significant decrease in either in vitro cell viability or stress activation after exposures to A549 human alveolar epithelial cells. In addition, MTAB-TA GNRs demonstrate a substantial level of cellular uptake while displaying a unique intracellular clustering pattern. This clustering pattern significantly reduces intracellular aggregation, preserving the GNRs NIR optical properties, vital for biomedical imaging applications. These results demonstrate how surface chemistry modifications enhance biocompatibility, allow for higher rate of internalization with low intracellular aggregation of MTAB-TA GNRs, and identify them as prime candidates for use in nanobased bio-imaging applications.Graphical Abstract.

Bio-Optical Data Assimilation With Observational Error Covariance Derived From an Ensemble of Satellite Images

Science.gov (United States)

Shulman, Igor; Gould, Richard W.; Frolov, Sergey; McCarthy, Sean; Penta, Brad; Anderson, Stephanie; Sakalaukus, Peter

2018-03-01

An ensemble-based approach to specify observational error covariance in the data assimilation of satellite bio-optical properties is proposed. The observational error covariance is derived from statistical properties of the generated ensemble of satellite MODIS-Aqua chlorophyll (Chl) images. The proposed observational error covariance is used in the Optimal Interpolation scheme for the assimilation of MODIS-Aqua Chl observations. The forecast error covariance is specified in the subspace of the multivariate (bio-optical, physical) empirical orthogonal functions (EOFs) estimated from a month-long model run. The assimilation of surface MODIS-Aqua Chl improved surface and subsurface model Chl predictions. Comparisons with surface and subsurface water samples demonstrate that data assimilation run with the proposed observational error covariance has higher RMSE than the data assimilation run with "optimistic" assumption about observational errors (10% of the ensemble mean), but has smaller or comparable RMSE than data assimilation run with an assumption that observational errors equal to 35% of the ensemble mean (the target error for satellite data product for chlorophyll). Also, with the assimilation of the MODIS-Aqua Chl data, the RMSE between observed and model-predicted fractions of diatoms to the total phytoplankton is reduced by a factor of two in comparison to the nonassimilative run.

Mechanical and optical characterization of bio-nanocomposite from pineapple leaf fiber material for food packaging

Science.gov (United States)

Nikmatin, Siti; Rudwiyanti, Jerry R.; Prasetyo, Kurnia W.; Yedi, Dwi A.

2015-01-01

The utilization of Bio-nanocomposite material that was derived from pineapple leaf fiber as filler and tapioca starch with plasticizer glycerol as a matrix for food packaging can reduce the use of plastic that usually was made from petroleum materials. It is important to develop and producethis environmental friendly plastic because of limited availability of petroleum nowadays. The process of synthesize and characterization tapioca starch with the plasticizer glycerol bionanocomposites using print method had been conducted. There were 3 samples with different filler concentration variation; 3%, 4% and 5%.The results of mechanical test from each sample showed that bio-nanocomposite with 5% filler concentration was the optimum sample with 4.6320 MPa for tensile strength test and 24.87% for the elongation test. Based on the result of optical test for each sample was gained that along with the increasing of concentration filler would make the absorbance value of the sample became decreased, bio-nanocomposite with 5% filler concentration had several peaks with low absorbance values. The first peak was in 253 nm of wavelength regionwith absorbance of 0.131%, and the second peak was in 343 nmwavelength region and absorbance was 0.087%.

Population Structure of Montastraea cavernosa on Shallow versus Mesophotic Reefs in Bermuda

Science.gov (United States)

Goodbody-Gringley, Gretchen; Marchini, Chiara; Chequer, Alex D.; Goffredo, Stefano

2015-01-01

Mesophotic coral reef ecosystems remain largely unexplored with only limited information available on taxonomic composition, abundance and distribution. Yet, mesophotic reefs may serve as potential refugia for shallow-water species and thus understanding biodiversity, ecology and connectivity of deep reef communities is integral for resource management and conservation. The Caribbean coral, Montastraea cavernosa, is considered a depth generalist and is commonly found at mesophotic depths. We surveyed abundance and size-frequency of M. cavernosa populations at six shallow (10m) and six upper mesophotic (45m) sites in Bermuda and found population structure was depth dependent. The mean surface area of colonies at mesophotic sites was significantly smaller than at shallow sites, suggesting that growth rates and maximum colony surface area are limited on mesophotic reefs. Colony density was significantly higher at mesophotic sites, however, resulting in equal contributions to overall percent cover. Size-frequency distributions between shallow and mesophotic sites were also significantly different with populations at mesophotic reefs skewed towards smaller individuals. Overall, the results of this study provide valuable baseline data on population structure, which indicate that the mesophotic reefs of Bermuda support an established population of M. cavernosa. PMID:26544963

Project BioLex. Final report

Energy Technology Data Exchange (ETDEWEB)

Dahl, J.; Broechner Andersen, M.; FORCE Technology

2007-01-15

The usage of biomass as a renewable source of energy is an important issue for a sustainable energy supply in Denmark. Due to pioneering work, Denmark has great experience in producing energy from biomass both in large scale CHP utilities as well as in small scale application such as domestic heating. This experience has been mainly focused in the usage of traditional domestic solid biomass fuels such as wood. However, the limited amounts available of these fuels and thereby following increasing prices have triggered the interest in using other sources of biomass. Rest and waste products from the agricultural industry is one examples of biomass which has a large potential to be used as a cheap biomass fuels. Projects of using these new types of biomass fuels are often hindered by insecurity whether this new biomass source can be applied as fuel or not. Thus in order to support usage of new sources of biomass a first step is to have knowledge on properties of the biomass fuel and be able to compare these to the known traditional fuels used. The BioLex was designed to provide this information about important properties of both traditional Danish as well as new more exotic solid biomass fuels in a database available to the public via the internet. (au)

Collective commitment for local bio energy projects. Motives and experiences of the initiators: An interview study of German renewable energy projects; Kollektives Engagement fuer kommunale Bioenergieprojekte. Motive und Erfahrungen der Initiatoren: Eine Interviewstudie deutschlandweiter erneuerbarer Energieprojekte

Energy Technology Data Exchange (ETDEWEB)

Rehatschek, Anja

2009-07-01

With the help of a sustainable power production, local bio energy projects connect ecological, economic and social solutions for the climate protection and the environment protection, for the support of the agriculture and forestry as well as for living together in the rural area. Past investigations concern primarily consider the collective commitment and the effects of such projects on the population. Under this aspect, the contribution under consideration is occupied with the acting of the initiators of the bio energy projects during the management of their tasks: Which conditions and motives of the initiators affect the conversion process? Under which conditions do the initiators arrive their goal? Which cognitive abilities, strategies of motivation and experiences particularly are important? For the qualitative investigation of these questions, five initiators of German local bio energy projects were interviewed. The results of these interviews are presented by means of paradigm models. It could be shown that both the person of the initiator and the relation of the person to the environment crucially contribute to the conversion of local bio energy projects.

Optical packet networks - conclusions from the IST DAVID project

DEFF Research Database (Denmark)

Dittmann, Lars

2004-01-01

This work outlines the result from the European research project DAVID working with optical packet switch solutions for both WAN and MAN. The project started July 2000 and has been completed successfully by the end of 2003.......This work outlines the result from the European research project DAVID working with optical packet switch solutions for both WAN and MAN. The project started July 2000 and has been completed successfully by the end of 2003....

Bio-energy. Innovators talking; Bio-energie. Innovators aan het woord

Energy Technology Data Exchange (ETDEWEB)

NONE

2013-02-15

Qualitative studies have been conducted of the results of completed projects focused on energy innovation, spread over the seven themes of the top sector Energy: Energy saving in industry, Energy conservation in the built environment, Gas, Bio-energy, Smart grids, Offshore Wind, Solar PV. This provides insight into the follow-up activities and lessons of some EOS (Energy Research Subsidy) completed projects with the aim to inspire, connect and strengthen the TKIs (Topconsortia for Knowledge and Innovation) and individual companies and researchers working on energy innovation. This report concerns the research on bio-energy [Dutch] Er is een kwalitatief onderzoek uitgevoerd naar de resultaten van afgeronde projecten gericht op energie-innovatie, verdeeld over de zeven thema's van de topsector Energie: Energiebesparing in de industrie; Energiebesparing in de gebouwde omgeving; Gas; Bio-energie; Smart grids; Wind op zee; Zon-pv. Daarmee wordt inzicht gegeven in de vervolgactiviteiten en lessen van een aantal afgesloten EOS-projecten (Energie Onderzoek Subsidie) met het oog op het inspireren, verbinden en versterken van de TKI's (Topconsortia voor Kennis en Innovatie) en individuele bedrijven en onderzoekers die werken aan energie-innovatie. Dit rapport betreft het onderzoek naar bio-energie.

Bio-energy. Innovators talking; Bio-energie. Innovators aan het woord

Energy Technology Data Exchange (ETDEWEB)

NONE

2013-02-15

Qualitative studies have been conducted of the results of completed projects focused on energy innovation, spread over the seven themes of the top sector Energy: Energy saving in industry, Energy conservation in the built environment, Gas, Bio-energy, Smart grids, Offshore Wind, Solar PV. This provides insight into the follow-up activities and lessons of some EOS (Energy Research Subsidy) completed projects with the aim to inspire, connect and strengthen the TKIs (Topconsortia for Knowledge and Innovation) and individual companies and researchers working on energy innovation. This report concerns the research on bio-energy [Dutch] Er is een kwalitatief onderzoek uitgevoerd naar de resultaten van afgeronde projecten gericht op energie-innovatie, verdeeld over de zeven thema's van de topsector Energie: Energiebesparing in de industrie; Energiebesparing in de gebouwde omgeving; Gas; Bio-energie; Smart grids; Wind op zee; Zon-pv. Daarmee wordt inzicht gegeven in de vervolgactiviteiten en lessen van een aantal afgesloten EOS-projecten (Energie Onderzoek Subsidie) met het oog op het inspireren, verbinden en versterken van de TKI's (Topconsortia voor Kennis en Innovatie) en individuele bedrijven en onderzoekers die werken aan energie-innovatie. Dit rapport betreft het onderzoek naar bio-energie.

Photoacoustic projection imaging using an all-optical detector array

Science.gov (United States)

Bauer-Marschallinger, J.; Felbermayer, K.; Berer, T.

2018-02-01

We present a prototype for all-optical photoacoustic projection imaging. By generating projection images, photoacoustic information of large volumes can be retrieved with less effort compared to common photoacoustic computed tomography where many detectors and/or multiple measurements are required. In our approach, an array of 60 integrating line detectors is used to acquire photoacoustic waves. The line detector array consists of fiber-optic MachZehnder interferometers, distributed on a cylindrical surface. From the measured variation of the optical path lengths of the interferometers, induced by photoacoustic waves, a photoacoustic projection image can be reconstructed. The resulting images represent the projection of the three-dimensional spatial light absorbance within the imaged object onto a two-dimensional plane, perpendicular to the line detector array. The fiber-optic detectors achieve a noise-equivalent pressure of 24 Pascal at a 10 MHz bandwidth. We present the operational principle, the structure of the array, and resulting images. The system can acquire high-resolution projection images of large volumes within a short period of time. Imaging large volumes at high frame rates facilitates monitoring of dynamic processes.

Effect of lime, N, P, and K amendments to surface-mined coal spoils on yield and chemical composition of common Bermuda grass

Energy Technology Data Exchange (ETDEWEB)

Ebelhar, M W; Barnhisel, R I; Akin, G W; Powell, J L

1982-12-01

Common Bermuda grass (Cynodon dactylon, L. Pers.) was used as an alternative to cool-season grasses such as tall fescue (Festuca arundinacea Schreb.) on acid sandstone surface-mine spoils in western Kentucky. Lime, N, P, and K fertilizer amendments were evaluated as to their effects in promoting Bermuda grass growth and development. The applied lime was effective in raising the pH from 3.4 to 4.6, 5.7, and 6.3 for the 18, 36 and 72 metric ton/ha treatments, respectively, over a 17-month period. Nitrogen was found to affect Bermuda grass production significantly and severe deficiency symptoms were observed where N was not applied. Dry matter yields increased significantly with each additional increment of N applied. Although the application of P and K increased the concentration of these ions in the plant tissues, the main influence of P and K was to increase the plants' resistance to winter killing; little effect on total dry matter production was observed. 19 references.

Comparison of bio-physical marine products from SeaWiFS, MODIS and a bio-optical model with in situ measurements from Northern European waters

Science.gov (United States)

Blondeau-Patissier, D.; Tilstone, G. H.; Martinez-Vicente, V.; Moore, G. F.

2004-09-01

In this paper, we compare bio-physical marine products from SeaWiFS, MODIS and a novel bio-optical absorption model with in situ measurements of chlorophyll-a (Chla) concentrations, total suspended material (TSM) concentrations, normalized water-leaving radiances (nLw) and absorption coefficients of coloured dissolved organic matter (aCDOM), total particulate (atotal) and phytoplankton (aphy) for 26 satellite match-ups in three Northern European seas. Cruises were undertaken in 2002 and 2003 in phytoplankton dominated open ocean waters of the Celtic Sea and optically complex waters of the Western English Channel (WEC) and North Sea. For all environments, Chla concentrations varied from 0.4 to 7.8 mg m-3, TSM from 0.2 to 6.0 mg l-1 and aCDOM at 440 nm from 0.02 to 0.30 m-1. SeaWiFS OC4v4, with the Remote Sensing Data Analysis Service (RSDAS) atmospheric correction for turbid waters, showed the most accurate retrieval of in situ Chla (RMS = 0.24; n = 26), followed by MODIS chlor_a_3 (RMS = 0.40; n = 26). This suggested that improving the atmospheric correction over optically complex waters results in more accurate Chla concentrations compared to those obtained using more complicated Chla algorithms. We found that the SeaWiFS OC4v4 and the MODIS chlor_a_2 switching band ratio algorithms, which mainly use longer wavebands than 443 nm, were less affected by CDOM. They were both more accurate than chlor_MODIS in the higher CDOM waters of the North Sea. Compared to MODIS the absorption model was better at retrieving atotal (RMS = 0.39; n = 78) and aCDOM (RMS = 0.79; n = 12) in all study areas and TSM in the WEC (RMS = 0.04; n = 10) but it underestimated Chla concentrations (RMS = 0.45; n = 26). The results are discussed in terms of atmospheric correction, sensor characteristics and the functioning and performance of Chla algorithms. This paper was presented at the Institute of Physics Meeting on Underwater Optics held during Photonex 03 at Warwick, UK, in October 2003

Decadal trends and common dynamics of the bio-optical and thermal characteristics of the African Great Lakes.

Directory of Open Access Journals (Sweden)

Steven Loiselle

Full Text Available The Great Lakes of East Africa are among the world's most important freshwater ecosystems. Despite their importance in providing vital resources and ecosystem services, the impact of regional and global environmental drivers on this lacustrine system remains only partially understood. We make a systematic comparison of the dynamics of the bio-optical and thermal properties of thirteen of the largest African lakes between 2002 and 2011. Lake surface temperatures had a positive trend in all Great Lakes outside the latitude of 0° to 8° south, while the dynamics of those lakes within this latitude range were highly sensitive to global inter-annual climate drivers (i.e. El Niño Southern Oscillation. Lake surface temperature dynamics in nearly all lakes were found to be sensitive to the latitudinal position of the Inter Tropical Convergence Zone. Phytoplankton dynamics varied considerably between lakes, with increasing and decreasing trends. Intra-lake differences in both surface temperature and phytoplankton dynamics occurred for many of the larger lakes. This inter-comparison of bio-optical and thermal dynamics provides new insights into the response of these ecosystems to global and regional drivers.

Efficient 3M PBS enhancing miniature projection optics

Science.gov (United States)

Yun, Zhisheng; Nevitt, Timothy; Willett, Stephen; Mortenson, Dave; Le, John; McDowell, Erin; Kent, Susan; Wong, Timothy; Beniot, Gilles J.; Ouderkirk, Andrew

2016-09-01

Over the past decade, 3M has developed a number of mobile projectors, with a goal towards providing the world's smallest, most efficient projection systems. Compact size and efficiency are required characteristics for projection systems used in mobile devices and more lately, in augmented reality systems. In this paper we summarize the main generations of 3M light engine optical designs. We present the optical architectures of four light engines, including the rationale behind the illumination designs and the projection systems. In particular, we describe various configurations relating to the 3M polarizing beam splitter (PBS) which is key to enhanced efficiency of the miniature projection systems.

Bermuda's balancing act: The economic dependence of cruise and air tourism on healthy coral reefs

NARCIS (Netherlands)

van Beukering, P.J.H.; Sarkis, S.; van der Putten, L.; Papyrakis, E.

2015-01-01

Although Bermuda has to date managed to achieve equilibrium between tourism and coral reef conservation, this delicate balance may be threatened by the growth and changing face of the tourism industry. This may result in negative impacts on the coral reefs and services provided by this valuable

Chlorophyll-a concentration estimation with three bio-optical algorithms: correction for the low concentration range for the Yiam Reservoir, Korea

Science.gov (United States)

Bio-optical algorithms have been applied to monitor water quality in surface water systems. Empirical algorithms, such as Ritchie (2008), Gons (2008), and Gilerson (2010), have been applied to estimate the chlorophyll-a (chl-a) concentrations. However, the performance of each algorithm severely degr...

BioSentinel

Data.gov (United States)

National Aeronautics and Space Administration — The Advanced Exploration Systems' (AES) BioSentinel project will develop, prototype, integrate, test, and prepare for the first spaceflight mission of a broadly...

The BioREGIO Carpathians project: aims, methodology and results from the “Continuity and Connectivity” analysis

Directory of Open Access Journals (Sweden)

Filippo Favilli

2015-07-01

Full Text Available BioREGIO Carpathians is a transnational cooperation project, co-financed under the second call of the EU South East Europe Transnational Cooperation Programme, priority area “Protection and Improvement of the Environment”. BioREGIO Carpathians run for three years (2011–2013 and is a flagship project for the Carpathian Convention (article four dealing with landscape and biological diversity, its Biodiversity Protocol and the Biodiversity Working Group. The project is built on the conservation, restoration and valorisation of the Carpathians ecological continuum to enable large herbivores and carnivores to live in coexistence with modern society. The Carpathian countries are expecting a massive pressure to modernize and extend their road infrastructures. If not considering the requirements of ecological network, this run-to-development will enhance landscape fragmentation, limit dispersal and genetic exchange of wildlife species. BioREGIO applied a multi-disciplinary approach (physical, legal and socio-economic in order to identify the most influencing barriers regarding connectivity throughout the Carpathians. Using two ArcGIS 10.0 tools in a three-step approach and a series of site visits, the continuity and connectivity analysis identified not only physical barriers but also legal aspects and socio-economic behaviour that are influencing ecological connectivity and playing a major role to conserve wildlife population. The investigation on the ground together with local experts and stakeholders enabled the adaptation of the GIS results and the development of feasible solutions to overcome the detected barriers with recommended priorities for implementing appropriate measurements to maintain connectivity and to sustain large carnivores, herbivores and biodiversity in the Carpathians.

Bio-optical characterization in an ultra-oligotrophic region: the North central Red Sea

KAUST Repository

Kheireddine, Malika

2015-04-01

Until recently, satellite-derived ocean color observations have been the only means of evaluating optical variability of the Red Sea. During a cruise in autumn 2014, we investigated the variability of Inherent Optical Properties (IOPs) in the North Central Red Sea (NCRS) with a particular focus on the particulate backscattering coefficient, bbp, and colored dissolved organic matter, CDOM, absorption. To our knowledge, these are some of the measurements of these properties in the Red Sea. The IOPs are derived from the concentration and physical properties of suspended particles in the ocean. They provide a simple description of the influence of these particles on the light within the water column. Bio-optical relationships found for ultra-oligotrophic waters of the six stations sampled significantly depart from the mean standard relationships provided for the global ocean, showing the peculiar character of the Red Sea. These optical anomalies relate to the specific biological and environmental conditions occurring in the Red Sea ecosystem. Specifically, the surface specific phytoplankton absorption coefficients are lower than the values predicted from the global relationships due to a high proportion of relatively large sized phytoplankton. Conversely, bbp values are much higher than the mean standard values for a given chlorophyll-a concentration, Chl a. This presumably results from the influence of highly refractive submicrometer particles of Saharan origin in the surface layer of the water column.

AN OPTICAL CHARACTER RECOGNITION RESEARCH AND DEMONSTRATION PROJECT.

Science.gov (United States)

1968

RESEARCH AND DEVELOPMENT OF PROTOTYPE LIBRARY SYSTEMS WHICH UTILIZE OPTICAL CHARACTER RECOGNITION INPUT HAS CENTERED AROUND OPTICAL PAGE READERS AND DOCUMENT READERS. THE STATE-OF-THE-ART OF BOTH THESE OPTICAL SCANNERS IS SUCH THAT BOTH ARE ACCEPTABLE FOR LIBRARY INPUT PREPARATION. A DEMONSTRATION PROJECT UTILIZING THE TWO TYPES OF READERS, SINCE…

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules.

Science.gov (United States)

Marazzi, Marco; Gattuso, Hugo; Monari, Antonio; Assfeld, Xavier

2018-01-01

Bio-macromolecules as DNA, lipid membranes and (poly)peptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes-often drugs or pollutants-that can (photo)sensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photo)sensitizers. Namely, absorption, emission and electronic circular dichroism (CD) spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i) to enhance absorption in the red and infra-red windows and (ii) to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/molecular mechanics (QM/MM) methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules

Directory of Open Access Journals (Sweden)

Marco Marazzi

2018-04-01

Full Text Available Bio-macromolecules as DNA, lipid membranes and (polypeptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes—often drugs or pollutants—that can (photosensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photosensitizers. Namely, absorption, emission and electronic circular dichroism (CD spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i to enhance absorption in the red and infra-red windows and (ii to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/molecular mechanics (QM/MM methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules

Science.gov (United States)

Marazzi, Marco; Gattuso, Hugo; Monari, Antonio; Assfeld, Xavier

2018-04-01

Bio-macromolecules as DNA, lipid membranes and (poly)peptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes – often drugs or pollutants – that can (photo)sensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photo)sensitizers. Namely, absorption, emission and electronic circular dichroism (CD) spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i) to enhance absorption in the red and infra-red windows and (ii) to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/ molecular mechanics (QM/MM) methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Bio-Conjugates for Nanoscale Applications

DEFF Research Database (Denmark)

Villadsen, Klaus

Bio-conjugates for Nanoscale Applications is the title of this thesis, which covers three different projects in chemical bio-conjugation research, namely synthesis and applications of: Lipidated fluorescent peptides, carbohydrate oxime-azide linkers and N-aryl O-R2 oxyamine derivatives. Lipidated...

Bio-optical data integration based on a 4 D database system approach

Science.gov (United States)

Imai, N. N.; Shimabukuro, M. H.; Carmo, A. F. C.; Alcantara, E. H.; Rodrigues, T. W. P.; Watanabe, F. S. Y.

2015-04-01

Bio-optical characterization of water bodies requires spatio-temporal data about Inherent Optical Properties and Apparent Optical Properties which allow the comprehension of underwater light field aiming at the development of models for monitoring water quality. Measurements are taken to represent optical properties along a column of water, and then the spectral data must be related to depth. However, the spatial positions of measurement may differ since collecting instruments vary. In addition, the records should not refer to the same wavelengths. Additional difficulty is that distinct instruments store data in different formats. A data integration approach is needed to make these large and multi source data sets suitable for analysis. Thus, it becomes possible, even automatically, semi-empirical models evaluation, preceded by preliminary tasks of quality control. In this work it is presented a solution, in the stated scenario, based on spatial - geographic - database approach with the adoption of an object relational Database Management System - DBMS - due to the possibilities to represent all data collected in the field, in conjunction with data obtained by laboratory analysis and Remote Sensing images that have been taken at the time of field data collection. This data integration approach leads to a 4D representation since that its coordinate system includes 3D spatial coordinates - planimetric and depth - and the time when each data was taken. It was adopted PostgreSQL DBMS extended by PostGIS module to provide abilities to manage spatial/geospatial data. It was developed a prototype which has the mainly tools an analyst needs to prepare the data sets for analysis.

Bermuda Triangle: a subsystem of the 168/E interfacing scheme used by Group B at SLAC

International Nuclear Information System (INIS)

Oxoby, G.J.; Levinson, L.J.; Trang, Q.H.

1979-12-01

The Bermuda Triangle system is a method of interfacing several 168/E microprocessors to a central system for control of the processors and overlaying their memories. The system is a three-way interface with I/O ports to a large buffer memory, a PDP11 Unibus and a bus to the 168/E processors. Data may be transferred bidirectionally between any two ports. Two Bermuda Triangles are used, one for the program memory and one for the data memory. The program buffer memory stores the overlay programs for the 168/E, and the data buffer memory, the incoming raw data, the data portion of the overlays, and the outgoing processed events. This buffering is necessary since the memories of 168/E microprocessors are small compared to the main program and the amount of data being processed. The link to the computer facility is via a Unibus to IBM channel interface. A PDP11/04 controls the data flow. 7 figures, 4 tables

Evaluation of a public health intervention to lower mercury exposure from fish consumption in Bermuda.

Directory of Open Access Journals (Sweden)

Eric Dewailly

Full Text Available OBJECTIVES: To assess the efficacy of a public health intervention to reduce blood mercury (Hg concentration levels in pregnant Bermudian women. METHODS: In 2003, we conducted a study entitled "Prenatal exposure of the Bermudian Population to Environmental Contaminants" which provided Bermuda's first baseline data on prenatal exposure to several environmental contaminants, including Hg. The mean Hg concentration from 42 healthy newborns measured in umbilical cord blood was 41.3 nmol/L, ranging from 5-160 nmol/L. This concentration was much higher than expected, being approximately 8 times the general levels found in Canada and the U.S. Furthermore, we estimated that 85% of total Hg measured was in the form of methylmercury (MeHg, indicating that seafood consumption was the primary source of Hg exposure during pregnancy in Bermuda. Locally sourced seafood was identified as the most significant possible contributory source of Hg exposure. In 2005 the authors began a complementary research programme to study the levels of Hg in local commercial fish species. Coming out of this research were specific local fish consumption guidelines issued by the Department of Health advising pregnant women to avoid those local fish species found to be high in Hg while still encouraging consumption of fish species having lower Hg levels. RESULTS: In 2010, under another research initiative, we returned to Bermuda to carry out another evaluation of Hg in human blood. Hg was measured in the blood of 49 pregnant women. The arithmetic mean Hg blood concentration was 6.6 nmol/L and the geometric mean 4.2 nmol/L. The maximum concentration found was 24 nmol/L. CONCLUSIONS: Hg exposure of Bermudian pregnant women has dropped significantly by a factor of around 5 since the foetal cord blood study in 2003.

Earth BioGenome Project: Sequencing life for the future of life.

Science.gov (United States)

Lewin, Harris A; Robinson, Gene E; Kress, W John; Baker, William J; Coddington, Jonathan; Crandall, Keith A; Durbin, Richard; Edwards, Scott V; Forest, Félix; Gilbert, M Thomas P; Goldstein, Melissa M; Grigoriev, Igor V; Hackett, Kevin J; Haussler, David; Jarvis, Erich D; Johnson, Warren E; Patrinos, Aristides; Richards, Stephen; Castilla-Rubio, Juan Carlos; van Sluys, Marie-Anne; Soltis, Pamela S; Xu, Xun; Yang, Huanming; Zhang, Guojie

2018-04-24

Increasing our understanding of Earth's biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of the new millennium. These challenges require fundamental new knowledge of the organization, evolution, functions, and interactions among millions of the planet's organisms. Herein, we present a perspective on the Earth BioGenome Project (EBP), a moonshot for biology that aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over a period of 10 years. The outcomes of the EBP will inform a broad range of major issues facing humanity, such as the impact of climate change on biodiversity, the conservation of endangered species and ecosystems, and the preservation and enhancement of ecosystem services. We describe hurdles that the project faces, including data-sharing policies that ensure a permanent, freely available resource for future scientific discovery while respecting access and benefit sharing guidelines of the Nagoya Protocol. We also describe scientific and organizational challenges in executing such an ambitious project, and the structure proposed to achieve the project's goals. The far-reaching potential benefits of creating an open digital repository of genomic information for life on Earth can be realized only by a coordinated international effort.

HYDRODYNAMICS AND BIO-OPTICAL ASSESSMENT OF TWO PRISTINE SUBTROPICAL ESTUARIES IN SOUTHERN BRAZIL

Directory of Open Access Journals (Sweden)

Mauricio Almeida Noernberg

2014-12-01

Full Text Available Measuring small-scale physical processes and how they affect the spatial patterns of sea water's optical constituents plays a key role in understanding the functioning of complex coastal ecosystems such as estuaries. The spatial variations of physical and bio-optical water properties were investigated during one spring tidal cycle in austral summer, on two transects across the channel of the Medeiros and Itaqui sub-estuaries. These sub-estuaries are a biosphere reserve, and part of the Paranaguá Estuarine System, located on the Southern Brazilian coast. Both sub-estuaries were classified as Type 1a, wellmixed with low stratification. The salinity variations are in phase with the water level, and the tidal propagation is well represented by a standing wave. The vertical velocity profiles showed little vertical shear, and the intensity of the u-component of the velocity varied semi-diurnally. The upper estuary salt transport was dominated by tidal diffusion in an unstable water column. The optical environment presented a mixed dominance of optically active substances, as indicated by the absorption coefficients of dissolved and particulate matter. The colored dissolved organic matter (CDOM showed overall conservative behavior and was dominant in light absorption below 550 nm in the Medeiros, while nonalgal particles play the most important role in light absorption in the Itaqui in the blue absorption band. The phytoplanktonic contribution is prominent in the red domain and increases as a function of saline intrusion. However, due to the influence of freshwater discharge and the re-suspension of bottom sediments induced by physical processes, the concentrations of the optical components in the water column do not generally have any simple relationships between them.

Hot Springs-Garrison Fiber Optic Project

International Nuclear Information System (INIS)

1994-10-01

Bonneville Power Administration (BPA) is proposing to upgrade its operational telecommunications system between the Hot Springs Substation and the Garrison Substation using a fiber optic system. The project would primarily involve installing 190 kilometers (120 miles) of fiber optic cable on existing transmission structures and installing new fiber optic equipment in BPA's substation yards and control houses. BPA prepared an environmental assessment (EA) evaluating the proposed action. This EA was published in October 1994. The EA identifies a number of minor impacts that might occur as a result of the proposed action, as well as some recommended mitigation measures. This Mitigation Action Plan (MAP) identifies specific measures to avoid, minimize, or compensate for impacts identified in the EA

Hot Springs-Garrison Fiber Optic Project

Energy Technology Data Exchange (ETDEWEB)

1994-10-01

Bonneville Power Administration (BPA) is proposing to upgrade its operational telecommunications system between the Hot Springs Substation and the Garrison Substation using a fiber optic system. The project would primarily involve installing 190 kilometers (120 miles) of fiber optic cable on existing transmission structures and installing new fiber optic equipment in BPA`s substation yards and control houses. BPA prepared an environmental assessment (EA) evaluating the proposed action. This EA was published in October 1994. The EA identifies a number of minor impacts that might occur as a result of the proposed action, as well as some recommended mitigation measures. This Mitigation Action Plan (MAP) identifies specific measures to avoid, minimize, or compensate for impacts identified in the EA.

Biochemical gas sensor (bio-sniffer) for ultrahigh-sensitive gaseous formaldehyde monitoring.

Science.gov (United States)

Kudo, Hiroyuki; Suzuki, Yuki; Gessei, Tomoko; Takahashi, Daishi; Arakawa, Takahiro; Mitsubayashi, Kohji

2010-10-15

An ultrahigh-sensitive fiber-optic biochemical gas sensor (bio-sniffer) for continuous monitoring of indoor formaldehyde was constructed and tested. The bio-sniffer measures gaseous formaldehyde as fluorescence of nicotinamide adenine dinucleotide (NADH), which is the product of formaldehyde dehydrogenase (FALDH) reaction. The bio-sniffer device was constructed by attaching a flow cell with a FALDH immobilized membrane onto a fiber-optic NADH measurement system. The NADH measurement system utilizes an ultraviolet-light emitting diode (UV-LED) with peak emission of 335 nm as an excitation light source. The excitation light was introduced to an optical fiber probe, and fluorescence emission of neighboring NADH, which was produced by applying formaldehyde vapor to the FALDH membrane, was concentrically measured with a photomultiplier tube. Assessment of the bio-sniffer was carried out using a standard gas generator. Response, calibration range and selectivity to other chemical substances were investigated. Circulating phosphate buffer, which contained NAD+, available for continuous monitoring of formaldehyde vapor. The calibration range of the bio-sniffer was 2.5 ppb to 10 ppm, which covers the guideline value of the World Health Organization (80 ppb). High selectivity to other gaseous substances due to specific activity of FALDH was also confirmed. Considering its high sensitivity, a possible application of the bio-sniffer is continuous indoor formaldehyde monitoring to provide healthy residential atmosphere. Copyright © 2010 Elsevier B.V. All rights reserved.

Investigating Bermuda's pollution history through stable isotope analyses of modern and museum-held gorgonian corals

International Nuclear Information System (INIS)

Baker, David M.; Murdoch, Thaddeus J.T.; Conti-Jerpe, Inga; Fogel, Marilyn

2017-01-01

For centuries, Bermuda has been challenged with wastewater management for the protection of human and environmental health. By quantifying the δ 15 N of the common sea fan Gorgonia ventalina sampled from 30 sites throughout Bermuda we show that sewage-derived nitrogen is detectable on nearshore coral reefs and declines across the lagoon to the outer rim. We also sampled gorgonians from two museum collections representing a 50y time-series (1958–2008). These samples revealed an increase in δ 15 N of > 4.0‰ until the mid-1970s, after which δ 15 N values slowly declined by ~ 2.0‰. A δ 15 N chronology from a gorgonian skeleton exhibited a similar decline over the last 30–40 years of approximately 0.6‰. We conclude that policies have been effective in reducing sewage impacts to Bermudian reefs. However, significant sources of sewage pollution persist and are likely have a strong impact on harbor and nearshore coral communities and human health.

Korea-China optical technology research centre project

Energy Technology Data Exchange (ETDEWEB)

Kim, Cheol Jung; Lee, J M; Rhee, Y J. and others

2001-09-01

The main objectives of this project are to establish the internatinal collaboration basis of optical technolgies between Korean and China through the combination of the Chinese advanced fundamental technologies with the Korea industrialization and commercialization infrastructures, by ways of exchanging scientist and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to that of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both of the countries, technical support for the investment on the optical industries in the two countries and establishment of foundation for the venture capitals are also the purpose of this project. Because the state-of-the-arts of the Chinese technologies such as aerospace engineering, military defense technology, applications to medical treatments, laser fusion research, and so on, are known to be far above those of Korean and upto one of the most advanced in the world, it is necessary that the acquisition of these technologies, resulting in the enhancement of the levels of domestic technologies in these fields, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued.

Korea-China Optical Technology Research Centre Project

International Nuclear Information System (INIS)

Kim, Cheol Jung; Rhee, Y. J.; Jung, D. Y. and others

2004-06-01

The main objectives of this project are to establish the international collaboration basis of optical technologies between Korea and China. The combination of the Chinese advanced fundamental technologies with the Korean industrialization and commercialization infrastructures is realized, by ways of exchanging scientists and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to those of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both countries, providing technical advice and suggestions to the optical industries in the two countries is an another goal of this project. The state-of-the-arts of the Chinese technologies such as aerospace engineering, military defence technology, medical technology, laser fusion research, and so on, are known to be far above those of Korean and up to one of the most advanced in the world. Thus it is thought to be necessary that the acquisition of these technologies, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued in order to enhance the levels of Korean technologies in these fields

Korea-China optical technology research centre project

International Nuclear Information System (INIS)

Kim, Cheol Jung; Lee, J. M.; Rhee, Y. J. and others

2001-09-01

The main objectives of this project are to establish the internatinal collaboration basis of optical technolgies between Korean and China through the combination of the Chinese advanced fundamental technologies with the Korea industrialization and commercialization infrastructures, by ways of exchanging scientist and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to that of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both of the countries, technical support for the investment on the optical industries in the two countries and establishment of foundation for the venture capitals are also the purpose of this project. Because the state-of-the-arts of the Chinese technologies such as aerospace engineering, military defense technology, applications to medical treatments, laser fusion research, and so on, are known to be far above those of Korean and upto one of the most advanced in the world, it is necessary that the acquisition of these technologies, resulting in the enhancement of the levels of domestic technologies in these fields, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued

Korea-China Optical Technology Research Centre Project

Energy Technology Data Exchange (ETDEWEB)

Kim, Cheol Jung; Rhee, Y. J.; Jung, D. Y. and others

2004-06-15

The main objectives of this project are to establish the international collaboration basis of optical technologies between Korea and China. The combination of the Chinese advanced fundamental technologies with the Korean industrialization and commercialization infrastructures is realized, by ways of exchanging scientists and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to those of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both countries, providing technical advice and suggestions to the optical industries in the two countries is an another goal of this project. The state-of-the-arts of the Chinese technologies such as aerospace engineering, military defence technology, medical technology, laser fusion research, and so on, are known to be far above those of Korean and up to one of the most advanced in the world. Thus it is thought to be necessary that the acquisition of these technologies, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued in order to enhance the levels of Korean technologies in these fields.

Bio nitrate Project: a new technology for water nitrate elimination by means of ionic exchange resins

International Nuclear Information System (INIS)

Arellano Ortiz, J.

2009-01-01

The use of ion exchange resins for nitrate elimination from water generates a waste containing a sodium chloride mixture plus the retained nitrates. this waste must be correctly disposed. In this project, the resin ionic form is modified to be regenerated with other compounds, different from the common salt, which are interesting because of the presence of mineral nutrition. So, with Bio nitrate Project, nitrates are recovered and the regeneration waste is apt to be use as fertilizer, for agricultural uses, or as complementary contribution of nutrients in biological water treatment. (Author) 27 refs.

Cognitive, Heterogeneous and Reconfigurable Optical Networks: The CHRON Project

DEFF Research Database (Denmark)

Caballero Jambrina, Antonio; Borkowski, Robert; de Miguel, Ignacio

2014-01-01

. The incorporation of cognitive techniques can help to optimize a network by employing mechanisms that can observe, act, learn and improve network performance, taking into account end-to-end goals. The EU project CHRON: Cognitive Heterogeneous Reconfigurable Optical Network proposes a strategy to efficiently control...... the network by implementing cognition. In this paper we present a survey of different techniques developed throughout the course of the project to apply cognition in future optical networks....

Student project of optical system analysis API-library development

Science.gov (United States)

Ivanova, Tatiana; Zhukova, Tatiana; Dantcaranov, Ruslan; Romanova, Maria; Zhadin, Alexander; Ivanov, Vyacheslav; Kalinkina, Olga

2017-08-01

In the paper API-library software developed by students of Applied and Computer Optics Department (ITMO University) for optical system design is presented. The library performs paraxial and real ray tracing, calculates 3d order (Seidel) aberration and real ray aberration of axis and non-axis beams (wave, lateral, longitudinal, coma, distortion etc.) and finally, approximate wave aberration by Zernike polynomials. Real aperture can be calculated by considering of real rays tracing failure on each surface. So far we assume optical system is centered, with spherical or 2d order aspherical surfaces. Optical glasses can be set directly by refraction index or by dispersion coefficients. The library can be used for education or research purposes in optical system design area. It provides ready to use software functions for optical system simulation and analysis that developer can simply plug into their software development for different purposes, for example for some specific synthesis tasks or investigation of new optimization modes. In the paper we present an example of using the library for development of cemented doublet synthesis software based on Slusarev's methodology. The library is used in optical system optimization recipes course for deep studying of optimization model and its application for optical system design. Development of such software is an excellent experience for students and help to understanding optical image modeling and quality analysis. This development is organized as student group joint project. We try to organize it as a group in real research and development project, so each student has his own role in the project and then use whole library functionality in his own master or bachelor thesis. Working in such group gives students useful experience and opportunity to work as research and development engineer of scientific software in the future.

Variation of particulate organic carbon and its relationship with bio-optical properties during a phytoplankton bloom in the Pearl River estuary

International Nuclear Information System (INIS)

Wang Guifen; Zhou Wen; Cao Wenxi; Yin Jianping; Yang Yuezhong; Sun Zhaohua; Zhang Yuanzhi; Zhao Jun

2011-01-01

Highlights: → A study about relationship between POC and optical properties during a phytoplankton bloom. → Empirical algorithms for retrieving POC concentration from optical data were developed. → Phytoplankton carbon and it's ratio to Chl-a are estimated and discussed. → Demonstrates that marine optical buoy can be a new platform for monitoring biogeochemical cycle. - Abstract: In this study, variations in the particulate organic carbon (POC) were monitored during a phytoplankton bloom event, and the corresponding changes in bio-optical properties were tracked at one station (114.29 o E, 22.06 o N) located in the Pearl River estuary. A greater than 10-fold increase in POC (112.29-1173.36 mg m -3 ) was observed during the bloom, with the chlorophyll a concentration (Chl-a) varying from 0.984 to 25.941 mg m -3 . A power law function is used to describe the relationship between POC and Chl-a, and the POC:Chl-a ratio tends to change inversely with Chl-a. Phytoplankton carbon concentration is indirectly estimated using the conceptual model proposed by , and this carbon is found to contribute 47.21% (±10.65%) to total POC. The estimated carbon-to-chlorophyll ratio of phytoplankton in diatom-dominated waters is found to be comparable with results reported in the literature. Empirical algorithms for determining the concentrations of Chl-a and POC were developed based on the relationships of these variables with the blue-to-green reflectance ratio. With these bio-optical models, the levels of particulate organic carbon and Chl-a could be predicted from the radiometric data measured by a marine optical buoy, which showed much more detailed information about the variability in biogeochemical parameters during this bloom event.

Inquiry Based Projects Using Student Ozone Measurements and the Status of Using Plants as Bio-Indicators

Science.gov (United States)

Ladd, I. H.; Fishman, J.; Pippin, M.; Sachs, S.; Skelly, J.; Chappelka, A.; Neufeld, H.; Burkey, K.

2006-05-01

Students around the world work cooperatively with their teachers and the scientific research community measuring local surface ozone levels using a hand-held optical scanner and ozone sensitive chemical strips. Through the GLOBE (Global Learning and Observations to Benefit the Environment) Program, students measuring local ozone levels are connected with the chemistry of the air they breathe and how human activity impacts air quality. Educational tools have been developed and correlated with the National Science and Mathematics Standards to facilitate integrating the study of surface ozone with core curriculum. Ozone air pollution has been identified as the major pollutant causing foliar injury to plants when they are exposed to concentrations of surface ozone. The inclusion of native and agricultural plants with measuring surface ozone provides an Earth system approach to understanding surface ozone. An implementation guide for investigating ozone induced foliar injury has been developed and field tested. The guide, Using Sensitive Plants as Bio-Indicators of Ozone Pollution, provides: the background information and protocol for implementing an "Ozone Garden" with native and agricultural plants; and, a unique opportunity to involve students in a project that will develop and increase their awareness of surface ozone air pollution and its impact on plants.

Integrated biomass utilization system developments (Kyoto-Bio-Cycle Project) and the effects of greenhouse gas reduction

International Nuclear Information System (INIS)

Nakamura, Kazuo; Hori, Hiroaki; Deguchi, Shinguo; Yano, Junya; Sakai, Shinichi

2010-01-01

Full text: The biomass available in Kyoto City located in urban area of Japan was estimated to be 2.02x10 6 t-wet/ yr (0.14x10 6 k liter/ yr oil equivalent), of which waste paper, waste timber, waste food, unused forest wood from the surrounding mountains and sewage sludge account for the largest amounts on an energy basis. These types of biomass can contribute to utilize for the reduction of fossil fuel consumption and for the reduction of greenhouse gas (GHG) emission. Therefore we started the Kyoto-Bio-Cycle Project (FY 2007-2009), which is the demonstration of renewable energy conversion technologies from the biomass. Specifically, we aimed for the greening of necessary materials such as methanol and the cyclic use of byproducts, with the bio diesel fuel production from used cooking oil (5 k liter-methyl ester/ day) as the core activity. Two technologies are being developed as part of the project. One is gasification and methanol synthesis to synthesize methanol with the pyrolytic gas generated from woody biomass. The other is high efficiency bio gasification that treats waste food, waste paper, and waste glycerin. This technology can improve the production rate of biogas and reduce the residue through the introduction of 80 degree Celsius-hyper-thermophilic hydrolysis in the 55 degree Celsius-thermophilic anaerobic fermentation process. These systems can produce 4 types of renewable energy such as bio diesel fuel, biogas, electricity and heat. And we conducted the life-cycle system analysis of GHG reduction effect for the demonstrating technologies, additionally we examined an optimum method of biomass utilization in the future low-carbon-society. As a result, the method that produces the liquid fuel (methanol, Ft oil) from dry biomass (waste timber, etc.) and the biogas from wet biomass (waste food, etc.) can reduce GHG emission highly at present and in the future, compared with the current direct combustion of biomass for the power generation. (author)

Optical design of ultrashort throw liquid crystal on silicon projection system

Science.gov (United States)

Huang, Jiun-Woei

2017-05-01

An ultrashort throw liquid crystal on silicon (LCoS) projector for home cinema, virtual reality, and automobile heads-up display has been designed and fabricated. To achieve the best performance and highest-quality image, this study aimed to design wide-angle projection optics and optimize the illumination for LCoS. Based on the telecentric lens projection system and optimized Koehler illumination, the optical parameters were calculated. The projector's optical system consisted of a conic aspheric mirror and image optics using either symmetric double Gauss or a large-angle eyepiece to achieve a full projection angle larger than 155 deg. By applying Koehler illumination, image resolution was enhanced and the modulation transfer function of the image in high spatial frequency was increased to form a high-quality illuminated image. The partial coherence analysis verified that the design was capable of 2.5 lps/mm within a 2 m×1.5 m projected image. The throw ratio was less than 0.25 in HD format.

An optical water type framework for selecting and blending retrievals from bio-optical algorithms in lakes and coastal waters.

Science.gov (United States)

Moore, Timothy S; Dowell, Mark D; Bradt, Shane; Verdu, Antonio Ruiz

2014-03-05

Bio-optical models are based on relationships between the spectral remote sensing reflectance and optical properties of in-water constituents. The wavelength range where this information can be exploited changes depending on the water characteristics. In low chlorophyll- a waters, the blue/green region of the spectrum is more sensitive to changes in chlorophyll- a concentration, whereas the red/NIR region becomes more important in turbid and/or eutrophic waters. In this work we present an approach to manage the shift from blue/green ratios to red/NIR-based chlorophyll- a algorithms for optically complex waters. Based on a combined in situ data set of coastal and inland waters, measures of overall algorithm uncertainty were roughly equal for two chlorophyll- a algorithms-the standard NASA OC4 algorithm based on blue/green bands and a MERIS 3-band algorithm based on red/NIR bands-with RMS error of 0.416 and 0.437 for each in log chlorophyll- a units, respectively. However, it is clear that each algorithm performs better at different chlorophyll- a ranges. When a blending approach is used based on an optical water type classification, the overall RMS error was reduced to 0.320. Bias and relative error were also reduced when evaluating the blended chlorophyll- a product compared to either of the single algorithm products. As a demonstration for ocean color applications, the algorithm blending approach was applied to MERIS imagery over Lake Erie. We also examined the use of this approach in several coastal marine environments, and examined the long-term frequency of the OWTs to MODIS-Aqua imagery over Lake Erie.

Seasonal variability in bio-optical properties along the coastal waters off Cochin

KAUST Repository

Vishnu, P.S.; Shaju, S.S.; Tiwari, Surya Prakash; Menon, Nandini; Nashad, M.; Joseph, C. Ajith; Raman, Mini; Hatha, Mohamed; Prabhakaran, M.P.; Mohandas, A.

2017-01-01

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m−3 with an average value of 6.56 ± 3.51 mg m−3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm−1 with an average value of 0.015 ± 0.002 nm−1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad

Seasonal variability in bio-optical properties along the coastal waters off Cochin

Science.gov (United States)

Vishnu, P. S.; Shaju, S. S.; Tiwari, S. P.; Menon, Nandini; Nashad, M.; Joseph, C. Ajith; Raman, Mini; Hatha, Mohamed; Prabhakaran, M. P.; Mohandas, A.

2018-04-01

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m-3 with an average value of 6.56 ± 3.51 mg m-3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm-1 with an average value of 0.015 ± 0.002 nm-1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad) significantly contributes light

Seasonal variability in bio-optical properties along the coastal waters off Cochin

KAUST Repository

Vishnu, P.S.

2017-12-15

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m−3 with an average value of 6.56 ± 3.51 mg m−3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm−1 with an average value of 0.015 ± 0.002 nm−1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad

BioData: a national aquatic bioassessment database

Science.gov (United States)

MacCoy, Dorene

2011-01-01

BioData is a U.S. Geological Survey (USGS) web-enabled database that for the first time provides for the capture, curation, integration, and delivery of bioassessment data collected by local, regional, and national USGS projects. BioData offers field biologists advanced capabilities for entering, editing, and reviewing the macroinvertebrate, algae, fish, and supporting habitat data from rivers and streams. It offers data archival and curation capabilities that protect and maintain data for the long term. BioData provides the Federal, State, and local governments, as well as the scientific community, resource managers, the private sector, and the public with easy access to tens of thousands of samples collected nationwide from thousands of stream and river sites. BioData also provides the USGS with centralized data storage for delivering data to other systems and applications through automated web services. BioData allows users to combine data sets of known quality from different projects in various locations over time. It provides a nationally aggregated database for users to leverage data from many independent projects that, until now, was not feasible at this scale. For example, from 1991 to 2011, the USGS Idaho Water Science Center collected more than 816 bioassessment samples from 63 sites for the National Water Quality Assessment (NAWQA) Program and more than 477 samples from 39 sites for a cooperative USGS and State of Idaho Statewide Water Quality Network (fig. 1). Using BioData, 20 years of samples collected for both of these projects can be combined for analysis. BioData delivers all of the data using current taxonomic nomenclature, thus relieving users of the difficult and time-consuming task of harmonizing taxonomy among samples collected during different time periods. Fish data are reported using the Integrated Taxonomic Information Service (ITIS) Taxonomic Serial Numbers (TSN's). A simple web-data input interface and self-guided, public data

Bio-Photonic Detection of Various Cellular Cultures

Science.gov (United States)

Hann, Patrick; Garzon, Maria; Pfeiffer, Erik; Lofland, Samuel; Knoesel, Ernst

2008-03-01

Since it is non-invasive, there has been increased research in the field of bio-optics. Many biological systems display an unusual phenomenon, delayed luminescence, produced by what is known as bio-photons. We present an apparatus and procedure for the detection of these ultra-weak photonic emissions using a single photon detection device. The results of bread yeast, saccramyces, and algae will be presented and compared to other reports in the literature

Acousto-optic laser projection systems for displaying TV information

International Nuclear Information System (INIS)

Gulyaev, Yu V; Kazaryan, M A; Mokrushin, Yu M; Shakin, O V

2015-01-01

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation. (review)

Acousto-optic laser projection systems for displaying TV information

Science.gov (United States)

Gulyaev, Yu V.; Kazaryan, M. A.; Mokrushin, Yu M.; Shakin, O. V.

2015-04-01

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation.

Acousto-optic laser projection systems for displaying TV information

Energy Technology Data Exchange (ETDEWEB)

Gulyaev, Yu V [V.A.Kotel' nikov Institute of Radio Engineering and Electronics, Russian Academy of Sciences, Moscow (Russian Federation); Kazaryan, M A [P N Lebedev Physics Institute, Russian Academy of Sciences, Moscow (Russian Federation); Mokrushin, Yu M [D.V. Efremov Scientific Research Institute of Electrophysical Apparatus (Russian Federation); Shakin, O V [Ioffe Physical Technical Institute, Russian Academy of Sciences, St. Petersburg (Russian Federation)

2015-04-30

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation. (review)

Anatomy of BioJS, an open source community for the life sciences.

Science.gov (United States)

Yachdav, Guy; Goldberg, Tatyana; Wilzbach, Sebastian; Dao, David; Shih, Iris; Choudhary, Saket; Crouch, Steve; Franz, Max; García, Alexander; García, Leyla J; Grüning, Björn A; Inupakutika, Devasena; Sillitoe, Ian; Thanki, Anil S; Vieira, Bruno; Villaveces, José M; Schneider, Maria V; Lewis, Suzanna; Pettifer, Steve; Rost, Burkhard; Corpas, Manuel

2015-07-08

BioJS is an open source software project that develops visualization tools for different types of biological data. Here we report on the factors that influenced the growth of the BioJS user and developer community, and outline our strategy for building on this growth. The lessons we have learned on BioJS may also be relevant to other open source software projects.

Geotechnical properties of sediments from North Pacific and Northern Bermuda Rise

International Nuclear Information System (INIS)

Silva, A.J.; Laine, E.P.; Lipkin, J.; Heath, G.R.; Akers, S.A.

1980-01-01

Studies of geotechnical properties for the Sub-seabed Disposal Program have been oriented toward sediment characterization related to effectiveness as a containment media and determination of detailed engineering behavior. Consolidation tests of the deeper samples in the North Pacific clays indicate that the sediment column is normally consolidated. The in-situ coefficient of permeability (k) within the cored depth of 25 meters is relatively constant at 10 -7 cm/sec. Consolidated undrained (CIU) triaxial tests indicate stress-strain properties characteristic of saturated clays with effective angles of friction of 35 0 for smectite and 31 0 for illite. These results are being used in computer modeling efforts. Some general geotechnical property data from the Bermuda Rise are also discussed

Upgrading of Intermediate Bio-Oil Produced by Catalytic Pyrolysis

Energy Technology Data Exchange (ETDEWEB)

Abdullah, Zia [Battelle Memorial Inst., Columbus, OH (United States); Chadwell, Brad [Battelle Memorial Inst., Columbus, OH (United States); Taha, Rachid [Battelle Memorial Inst., Columbus, OH (United States); Hindin, Barry [Battelle Memorial Inst., Columbus, OH (United States); Ralston, Kevin [Battelle Memorial Inst., Columbus, OH (United States)

2015-06-30

The objectives of this project were to (1) develop a process to upgrade catalytic pyrolysis bio-oil, (2) investigate new upgrading catalysts suited for upgrading catalytic pyrolysis bio-oil, (3) demonstrate upgrading system operation for more than 1,000 hours using a single catalyst charge, and (4) produce a final upgraded product that can be blended to 30 percent by weight with petroleum fuels or that is compatible with existing petroleum refining operations. This project has, to the best of our knowledge, for the first time enabled a commercially viable bio-oil hydrotreatment process to produce renewable blend stock for transportation fuels.

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Science.gov (United States)

Pospíšilová, Marie; Kuncová, Gabriela; Trögl, Josef

2015-01-01

This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS) and biosensors (FOBS). Fiber optic sensor (FOS) systems use the ability of optical fibers (OF) to guide the light in the spectral range from ultraviolet (UV) (180 nm) up to middle infrared (IR) (10 µm) and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors. PMID:26437407

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors.

Science.gov (United States)

Pospíšilová, Marie; Kuncová, Gabriela; Trögl, Josef

2015-09-30

This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS) and biosensors (FOBS). Fiber optic sensor (FOS) systems use the ability of optical fibers (OF) to guide the light in the spectral range from ultraviolet (UV) (180 nm) up to middle infrared (IR) (10 μm) and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors.

Towards a Plant Bio-Machine

DEFF Research Database (Denmark)

Nichele, Stefano; Risi, Sebastian; Tufte, Gunnar

2018-01-01

as a proof of concept that sensing capabilities of plants are a viable option for the development of plant bio-machines. Different future scenarios (some speculative) are discussed. The work herein is carried out as a collaboration between the EU project Flora Robotica and the EU project NASCENCE....

Development and Evaluation of an On-Line Educational Module for Volunteer Leaders on Bio-Security in Washington State 4-H Livestock Projects

Science.gov (United States)

Stevenson, Jill L.; Moore, Dale A.; Newman, Jerry; Schmidt, Janet L.; Smith, Sarah M.; Smith, Jean; Kerr, Susan; Wallace, Michael; BoyEs, Pat

2011-01-01

An on-line module on disease prevention was created for 4-H volunteer leaders who work with livestock projects in Washington to better prepare them to teach youth about bio-security and its importance in 4-H livestock projects. Evaluation of the module and usage statistics since the module's debut were collected and evaluated. The module increases…

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Directory of Open Access Journals (Sweden)

Marie Pospíšilová

2015-09-01

Full Text Available This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS and biosensors (FOBS. Fiber optic sensor (FOS systems use the ability of optical fibers (OF to guide the light in the spectral range from ultraviolet (UV (180 nm up to middle infrared (IR (10 μm and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors.

Bio-Photons of Various Cellular Cultures and Tissues

Science.gov (United States)

Hann, Patrick; Knoesel, Ernst; Garzon, Maria; Lofland, Samuel; Pfieffer, Erik

2008-04-01

Since it is non-invasive, there has been increased research in the field of bio-optics. Many biological systems display an unusual phenomenon, delayed luminescence, produced by what is known as bio-photons. We present an apparatus and procedure for the detection of these ultra-weak photonic emissions using a single photon detection device. The results of bread yeast, saccramyces, and algae will be presented and compared to other reports in the literature.

The BEST project - BioEthanol for the Sustainable Transportation - a contribution to the environment of the metropolis; O projeto BEST - BioEtanol para o Transporte Sustentavel - uma contribuicao ao meio ambiente das metropoles

Energy Technology Data Exchange (ETDEWEB)

Gonzalez Velazquez, Silvia Maria Stortini; Santos, Sandra Maria Apolinario; Moreira, Jose Roberto; Melo, Euler Hoffmann; Coelho, Suani Teixeira [Centro Nacional de Referencia em Biomassa (CENBIO), Sao Paulo, SP (Brazil)], E-mail: silvia@iee.usp.br

2010-07-01

The BEST Project - Bio Ethanol for the Sustainable Transportation was an initiative of the European Union, coordinated by the Stockholm City Hall, at Sweden. This project gave incentives the use of ethanol, replacing the Diesel fuel, at the public transportation in Brazil and in the world. The used vehicles in the tests were monitored and evaluated to demonstrate the efficiency and environmental energy of the ethanol, and after the results, the BEST project and the European Union gave recommendations for the formulation of public politics of incentives to the use of technology.

Application study of Bio-FGD based on environmental safety during the coal combustion

Science.gov (United States)

Zhang, Pin

2018-05-01

Coal combustion produces a large amount of acidic gas, which is the main cause of acid rain and other natural disasters. Flue Gas Desulfurization (FGD) is a necessary requirement for clean coal combustion. Compared with the traditional chemical desulfurization technology, biological desulfurization has the advantages of low operating cost, without secondary pollution, low carbon emission and the additional economic benefits. The process and structure of BioDeSOx which as one of Bio-FGD technology is introduced. The major factors that influent BioDeSOx Bio- FGD system is the pH, oxidation reduction potential (-300 MV to -400MV), electrical conductivity, the adding amount of nutrient and temperature (30°C-40°C). Taking the Bio- FGD project of Yixing xielian thermal power plant as an example, the BioDeSOx technology was applied in this project. The environmental and economic benefits of the project were greater than the traditional desulfurization technology. With the continuous improvement of environmental safety standards, Bio- FGD technology will have broad application prospects.

The GALAXIE all-optical FEL project

Energy Technology Data Exchange (ETDEWEB)

Rosenzweig, J. B.; Arab, E.; Andonian, G.; Cahill, A.; Fitzmorris, K.; Fukusawa, A.; Hoang, P.; Jovanovic, I.; Marcus, G.; Marinelli, A.; Murokh, A.; Musumeci, P.; Naranjo, B.; O' Shea, B.; O' Shea, F.; Ovodenko, A.; Pogorelsky, I.; Putterman, S.; Roberts, K.; Shumail, M. [Dept. of Physics and Astronomy, University of California, Los Angeles, 405 Hilgard Ave., Los Angeles, CA 90034 (United States); Dept. of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA 16802 (United States); Dept. of Physics and Astronomy, University of California, Los Angeles, 405 Hilgard Ave., Los Angeles, CA 90034 (United States); and others

2012-12-21

We describe a comprehensive project, funded under the DARPA AXiS program, to develop an all-optical table-top X-ray FEL based on dielectric acceleration and electromagnetic undulators, yielding a compact source of coherent X-rays for medical and related applications. The compactness of this source demands that high field (>GV/m) acceleration and undulation-inducing fields be employed, thus giving rise to the project's acronym: GV/m AcceLerator And X-ray Integrated Experiment (GALAXIE). There are numerous physics and technical hurdles to surmount in this ambitious scenario, and the integrated solutions include: a biharmonic photonic TW structure, 200 micron wavelength electromagnetic undulators, 5 {mu}m laser development, ultra-high brightness magnetized/asymmetric emittance electron beam generation, and SASE FEL operation. We describe the overall design philosophy of the project, the innovative approaches to addressing the challenges presented by the design, and the significant progress towards realization of these approaches in the nine months since project initialization.

The Ocean Colour Climate Change Initiative: III. A Round-Robin Comparison on In-Water Bio-Optical Algorithms

Science.gov (United States)

Brewin, Robert J.W.; Sathyendranath, Shubha; Muller, Dagmar; Brockmann, Carsten; Deschamps, Pierre-Yves; Devred, Emmanuel; Doerffer, Roland; Fomferra, Norman; Franz, Bryan; Grant, Mike;

Transfer factor of Radium -226, lead-210 and Polonium-210 from Norm contaminated soil to Atriplex, Afelfa and Bermuda grasses

International Nuclear Information System (INIS)

Al-Masri, M.S.; Mukhallati, H.; Al-Hamwi, A.

2011-10-01

transfer factors of Radium -226, lead-210 and Polonium-210 from contaminated soil with oil coproduced water to grazing plants in the north eastern region of Syria have been determined. contaminated soil was collected from one of the AL-Furat Petroleum Oil company oil fields;soil was distributed into several pots where the studied plants were planted in order to study the transfer factors of radioisotopes to them. Results have shown that the mean transfer factors of radium to green parts have reached has reached 0.0016 in Atriplex halimus L.,0.0021 in Atriplex canescens Nutt, 0.0025 in Atriplex Leucoclada Bioss,0.0082 in Bermuda grass and 0.0167 in Medicago Sativ L,which was the highest,while the transfer factors of polonium and lead were ten times higher than those for radium and reacted 0.012 in Atriplex Leucoclada Bioss, 0.011 in Atriplex canescens Nutt, 0.007 in Atriplex halimus L.0.32 in bermuda grass and 0.025 in Afelfa.(author)

Soot and chemiluminescence in diesel combustion of bio-derived, oxygenated and reference fuels

NARCIS (Netherlands)

Klein-Douwel, R.J.H.; Donkerbroek, A.J.; Vliet, A.P. van; Boot, M.D.; Somers, L.M.T.; Baert, R.S.G.; Dam, N.J.; Meulen, J.J. ter

2009-01-01

High-speed imaging, spectroscopy and thermodynamical characterization are applied to an optically accessible, heavy-duty diesel engine in order to compare sooting and chemiluminescence behaviour of bio-derived, oxygenated fuels and various reference fuels. The fuels concerned include the bio-derived

Optimising the bio-piling of weathered hydrocarbons within a risk management framework

International Nuclear Information System (INIS)

Hough, R.; Brassington, K.; Sinke, A.; Crossley, J.; Paton, G.; Semple, K.; Risdon, G.; Jacobson, Ch.; Daly, P.; Jackman, S.; Lethbridge, G.; Pollard, S.

2005-01-01

Thirty years of research into petroleum microbiology and bio-remediation have bypassed an important observation - that many hydrocarbon contaminated sites posing potential risks to human health harbour weathered, 'mid-distillate' or heavy oils rather than 'fresh product'. Ex-situ bio-piling is an important technology for treating soils contaminated with weathered hydrocarbons. However, its performance continues to be represented by reference to reductions in the hydrocarbon 'load' in the soils being treated, rather than reductions in the risks posed by the hydrocarbon contamination. The absence of 'risk' from the vocabulary of many operators and remediation projects reduces stakeholder (regulatory, investor, landowner, and public) confidence in remediation technologies, and subsequently limits the market potential of these technologies. Stakeholder confidence in the bio-piling of weathered hydrocarbons may be improved by demonstrating process optimisation within a validated risk management framework. To address these issues, a consortium led by Cranfield University's Integrated Waste Management Centre has secured funding from the UK Government's Bio-remediation LINK programme. Project PROMISE (involving BP, SecondSite Regeneration Ltd., Dew Remediation Ltd., TES Bretby (Mowlem Group), technology translators PERA, and academics from Aberdeen, Cranfield and Lancaster Universities) aims to improve market confidence in bio-piling by demonstrating how this treatment may be applied within a risk management context. For weathered hydrocarbons in particular, the underpinning scientific components of process control, waste diagnostics, environmental fate modelling, and risk assessment have yet to be fully integrated to allow bio-piling projects to be verified with improved confidence. The Joint Research Council Review of Bio-remediation recognised this in calling explicitly for the positioning of bio-remediation within a risk management framework. The PERF report (Thermo

A novel liquid-filled microstructured polymer optical fiber as bio-sensing platform for Raman spectroscopy

Science.gov (United States)

Azkune, Mikel; Arrospide, Eneko; Berganza, Amaia; Bikandi, Iñaki; Aldabaldetreku, Gotzon; Durana, Gaizka; Zubia, Joseba

2018-02-01

One approach to overcome the poor efficiency of the Raman scattering as a sensing platform is to use microstructured optical fibers. In this type of fibers with a longitudinal holey structure, light interacts with the target sample, which is confined in the core, giving rise to a light intensity increase of the obtained Raman spectra due to the large interaction distances and the guidance of the scattered light. In this work, we present an ad-hoc fabricated liquid-core microstructured polymer optical fiber (LC-mPOF) as a bio-sensing platform for Raman Spectroscopy. Arising from an initial simulation stage, we create the desired preform using the drilling technique and afterwards the LC-mPOF is drawn in our fiber drawing tower. The guiding mechanism of the light through the solution has a major importance, being a key factor to obtain appreciable enhancements in Raman scattering. In this case, in order to optimize the Raman scattering signal of dissolved glucose (target molecule), we have filled the core with an aqueous solution of the target molecule, enabling in this way the modified total internal reflection mechanism. Experimental Raman measurements are performed and results are discussed.

Peptide Integrated Optics.

Science.gov (United States)

Handelman, Amir; Lapshina, Nadezda; Apter, Boris; Rosenman, Gil

2018-02-01

Bio-nanophotonics is a wide field in which advanced optical materials, biomedicine, fundamental optics, and nanotechnology are combined and result in the development of biomedical optical chips. Silk fibers or synthetic bioabsorbable polymers are the main light-guiding components. In this work, an advanced concept of integrated bio-optics is proposed, which is based on bioinspired peptide optical materials exhibiting wide optical transparency, nonlinear and electrooptical properties, and effective passive and active waveguiding. Developed new technology combining bottom-up controlled deposition of peptide planar wafers of a large area and top-down focus ion beam lithography provides direct fabrication of peptide optical integrated circuits. Finding a deep modification of peptide optical properties by reconformation of biological secondary structure from native phase to β-sheet architecture is followed by the appearance of visible fluorescence and unexpected transition from a native passive optical waveguiding to an active one. Original biocompatibility, switchable regimes of waveguiding, and multifunctional nonlinear optical properties make these new peptide planar optical materials attractive for application in emerging technology of lab-on-biochips, combining biomedical photonic and electronic circuits toward medical diagnosis, light-activated therapy, and health monitoring. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Transfer factors of 226Ra, 210Pb and 210Po from NORM-contaminated oil field soil to some Atriplex species, Alfalfa and Bermuda grass

International Nuclear Information System (INIS)

Al-Masria, M.S.; Mukalallati, H.; Al-Hamwi, A.

2014-01-01

Transfer factors of 226 Ra, 210 Pb and 210 Po from soil contaminated with naturally occurring radioactive materials (NORM) in oil fields to some grazing plants were determined using pot experiments. Contaminated soil was collected from a dry surface evaporation pit from a Syrian oil field in the Der Ezzor area. Five types of plants (Atriplex halimus L., Atriplex canescens, Atriplex Leucoclada Bioss, Alfalfa and Bermuda grass) were grown and harvested three times over two years. The results show that the mean transfer factors of 226 Ra from the contaminated soil to the studied plant species were 1.6 x 10 -3 for Atriplex halimus L., 2.1 x 10 -3 for Atriplex canescens, 2.5 x 10 -3 for Atriplex Leucoclada Bioss, 8.2 x 10 -3 for Bermuda grass, and the highest value was 1.7 x 10 -2 for Alfalfa. Transfer factors of 210 Pb and 210 Po were higher than 226 Ra TFs by one order of magnitude and reached 7 x 10 -3 , 1.1 x 10 -2 , 1.2 x 10 -2 , 3.2 x 10 -2 and 2.5 x 10 -2 for Atriplex halimus, Atriplex canescens, Atriplex Leucoclada Bioss, Bermuda grass and Alfalfa, respectively. The results can be considered as base values for transfer factors of 226 Ra, 210 Pb and 210 Po in semiarid regions. (authors)

Predation as the primary selective force in recurrent evolution of gigantism in Poecilozonites land snails in Quaternary Bermuda

Science.gov (United States)

Olson, Storrs L.; Hearty, Paul J.

2010-01-01

During the last half million years, pulses of gigantism in the anagenetic lineage of land snails of the subgenus Poecilozonites on Bermuda were correlated with glacial periods when lower sea level resulted in an island nearly an order of magnitude larger than at present. During those periods, the island was colonized by large vertebrate predators that created selection pressure for large size and rapid growth in the snails. Extreme reduction in land area from rising seas, along with changes in ecological conditions at the onset of interglacial episodes, marked extinction events for large predators, after which snails reverted to much smaller size. The giant snails were identical in morphology during the last two glacials when the predators included a large flightless rail Rallus recessus (marine isotope stages (MIS) 4-2) and a crane Grus latipes and a duck Anas pachysceles (MIS 6). In a preceding glacial period (MIS 10), when the fauna also included the tortoise Hesperotestudo bermudae, the snails were not only large, but the shells were much thicker, presumably to prevent crushing by tortoises. Evolution of Poecilozonites provides an outstanding example of dramatic morphological change in response to environmental pressures in the absence of cladogenesis. PMID:20554560

Stabilization of Bio-Oil Fractions for Insertion into Petroleum Refineries

Energy Technology Data Exchange (ETDEWEB)

Brown, Robert C. [Iowa State Univ., Ames, IA (United States); Smith, Ryan [Iowa State Univ., Ames, IA (United States); Wright, Mark [Iowa State Univ., Ames, IA (United States); Elliott, Douglas [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Resasco, Daniel [Univ. of Oklahoma, Norman, OK (United States); Crossley, Steven [Univ. of Oklahoma, Norman, OK (United States)

2014-09-28

This project is part of a collaboration effort between Iowa State University (ISU), University of Oklahoma (OK) and Pacific Northwest National Laboratory (PNNL). The purpose of this project is to stabilize bio-oil fractions and improve their suitability for insertion into petroleum refineries. Bio-oil from fast pyrolysis of biomass is a complex mixture of unstable organic compounds. These organic compounds react under standard room conditions resulting in increases in bio-oil viscosity and water content – both detrimental for bio-oil storage and transportation. This study employed fractionation and upgrading systems to improve the stability of bio-oil. The fractionation system consists of a series of condensers, and electrostatic precipitators designed to separate bio-oil into five fractions: soluble carbohydrates (SF1&2), clean phenolic oligomers (CPO) and middle fraction (SF3&4), light oxygenates (SF5). A two-stage upgrading process was designed to process bio-oil stage fractions into stable products that can be inserted into a refinery. In the upgrading system, heavy and middle bio-oil fractions were upgraded into stable oil via cracking and subsequent hydrodeoxygenation. The light oxygenate fraction was steam reformed to provide a portion of requisite hydrogen for hydroprocessing. Hydrotreating and hydrocracking employed hydrogen from natural gas, fuel gas and light oxygenates reforming. The finished products from this study consist of gasoline- and diesel-blend stock fuels.

The way to bio heat. A manual on production of heat from bio fuel; Veien til biovarme. Manual for produksjon av ferdigvarme fra biobrensel

Energy Technology Data Exchange (ETDEWEB)

Breen, Tor; Liodden, Ole Joergen; Farsund Oeystein; Martinsen, Arnold Kyrre

2008-09-26

The manual is a tool in the process of planning and establishing a bio heat company. It focuses on both technical, administrative, and economic aspects. Part 1 of the manual briefly reviews the production of bio fuel and bio heat, part 2 considers the organizational aspects of the project, and part 3 is a tool box containing laws and regulations, templates for contracts/agreements etc

CONCEPTUAL DESIGN ASSESSMENT FOR THE CO-FIRING OF BIO-REFINERY SUPPLIED LIGNIN PROJECT

International Nuclear Information System (INIS)

Ted Berglund; Jeffrey T. Ranney; Carol L. Babb; Jacqueline G. Broder

2002-01-01

The major aspects of this project are proceeding toward completion. Prior to this quarter, design criteria, tentative site selection, facility layout, and preliminary facility cost estimates were completed and issued. Processing of bio-solids was completed, providing material for the pilot operations. Pilot facility hydrolysis production has been completed to produce lignin for co-fire testing and the lignin fuel was washed and dewatered. Both the lignin and bio-solids fuel materials for co-fire testing were sent to the co-fire facility (EERC) for evaluation and co-firing. EERC has received coal typical of the fuel to the TVA-Colbert boilers. This material was used at EERC as baseline material and for mixing with the bio-fuel for combustion testing. All the combustion and fuel handling tests at EERC have been completed. During fuel preparation EERC reported no difficulties in fuel blending and handling. Preliminary co-fire test results indicate that the blending of lignin and bio-solids with the Colbert coal blend generally reduces NO(sub x) emissions, increases the reactivity of the coal, and increases the ash deposition rate on superheater surfaces. Deposits produced from the fuel blends, however, are more friable and hence easier to remove from tube surfaces relative to those produced from the baseline Colbert coal blend. The final co-fire testing report is being prepared at EERC and will be completed by the end of the second quarter of 2002. The TVA-Colbert facility has neared completion of the task to evaluate co-location of the Masada facility on the operation of the power generation facility. The TVA-Colbert fossil plant is fully capable of providing a reliable steam supply. The preferred steam supply connection points and steam pipeline routing have been identified. The environmental review of the pipeline routing has been completed and no major impacts have been identified. Detailed assessment of steam export impacts on the Colbert boiler system have been

BioMoby extensions to the Taverna workflow management and enactment software

Directory of Open Access Journals (Sweden)

Senger Martin

2006-11-01

Full Text Available Abstract Background As biology becomes an increasingly computational science, it is critical that we develop software tools that support not only bioinformaticians, but also bench biologists in their exploration of the vast and complex data-sets that continue to build from international genomic, proteomic, and systems-biology projects. The BioMoby interoperability system was created with the goal of facilitating the movement of data from one Web-based resource to another to fulfill the requirements of non-expert bioinformaticians. In parallel with the development of BioMoby, the European myGrid project was designing Taverna, a bioinformatics workflow design and enactment tool. Here we describe the marriage of these two projects in the form of a Taverna plug-in that provides access to many of BioMoby's features through the Taverna interface. Results The exposed BioMoby functionality aids in the design of "sensible" BioMoby workflows, aids in pipelining BioMoby and non-BioMoby-based resources, and ensures that end-users need only a minimal understanding of both BioMoby, and the Taverna interface itself. Users are guided through the construction of syntactically and semantically correct workflows through plug-in calls to the Moby Central registry. Moby Central provides a menu of only those BioMoby services capable of operating on the data-type(s that exist at any given position in the workflow. Moreover, the plug-in automatically and correctly connects a selected service into the workflow such that users are not required to understand the nature of the inputs or outputs for any service, leaving them to focus on the biological meaning of the workflow they are constructing, rather than the technical details of how the services will interoperate. Conclusion With the availability of the BioMoby plug-in to Taverna, we believe that BioMoby-based Web Services are now significantly more useful and accessible to bench scientists than are more traditional

Bio energy: Bio fuel - Properties and Production

International Nuclear Information System (INIS)

Wilhelmsen, Gunnar; Martinsen, Arnold Kyrre; Sandberg, Eiliv; Fladset, Per Olav; Kjerschow, Einar; Teslo, Einar

2001-01-01

This is Chapter 3 of the book ''Bio energy - Environment, technique and market''. Its main sections are: (1) Definitions and properties, (2) Bio fuel from the forest, (3) Processed bio fuel - briquettes, pellets and powder, (4) Bio fuel from agriculture, (5) Bio fuel from agro industry, (6) Bio fuel from lakes and sea, (7) Bio fuel from aquaculture, (8) Bio fuel from wastes and (9) Hydrogen as a fuel. The exposition largely describes the conditions in Norway. The chapter on energy from the forest includes products from the timber and sawmill industry, the pulp and paper industry, furniture factories etc. Among agricultural sources are straw, energy forests, vegetable oil, bio ethanol, manure

Effect of two phyto hormone producer rhizobacteria on the bermuda grass growth response and tolerance to phenanthrene

International Nuclear Information System (INIS)

Guerrero-Zuniga, A.; Rojas-Contreras, A.; Rodriguez-Dorantes, A.; Montes-Villafan, S.

2009-01-01

Plant growth-promoting rhizobacteria (PGPR) are free-living bacteria that have the ability to relieve environmental stress in plants, increasing the plant growth potential. Of importance to phytoremediation, PGPR stimulate plant root development and enhance root growth.This study evaluated the growth response and the tolerance to phenanthrene of Bermuda grass: Cynodon dactylon inoculated with two phytohormone producer rhizobacteria: strains II and III, isolated from a contaminated soil with petroleum hydrocarbons. (Author)

Effect of two phyto hormone producer rhizobacteria on the bermuda grass growth response and tolerance to phenanthrene

Energy Technology Data Exchange (ETDEWEB)

Guerrero-Zuniga, A.; Rojas-Contreras, A.; Rodriguez-Dorantes, A.; Montes-Villafan, S.

2009-07-01

Plant growth-promoting rhizobacteria (PGPR) are free-living bacteria that have the ability to relieve environmental stress in plants, increasing the plant growth potential. Of importance to phytoremediation, PGPR stimulate plant root development and enhance root growth.This study evaluated the growth response and the tolerance to phenanthrene of Bermuda grass: Cynodon dactylon inoculated with two phytohormone producer rhizobacteria: strains II and III, isolated from a contaminated soil with petroleum hydrocarbons. (Author)

Apparatus and method of optical marker projection for the three-dimensional shape measurement

Science.gov (United States)

Chen, Zhe; Qu, Xinghua; Geng, Xin; Zhang, Fumin

2015-08-01

Optical photography measurement and three-dimensional (3-D) scanning measurement have been widely used in the field of the fast dimensional and surface metrology. In the measurement process, however, retro-reflective markers are often pasted on the surface in advance for image registration and positioning the 3-D measuring instruments. For the large-scale workpiece with freeform surface, the process of pasting markers is time consuming, which reduces the measurement efficiency. Meanwhile, the measurement precision is impaired owing to the thickness of the marker. In this paper, we propose a system that projects two-dimensional (2-D) array optical markers with uniform energy on the surface of the workpiece instead of pasting retro-reflective markers, which achieves large-range and automated optical projection of the mark points. In order to conjunction with the 3-D handheld scanner belonging to our team, we develop an apparatus of optical marker projection, which is mainly composed of the high-power laser, the optical beam expander system, adjustable aperture stop and Dammann grating of dibasic spectrophotometric device. The projection apparatus can achieve the function of beams of 15 * 15 uniformly light of the two-dimensional lattice. And it's much cheaper than the existing systems.

Depth, temperature, oxygen and salinity profile data from repetitive occupation of a hydrographic station off St. George's, Bermuda from 1954 through 1984 (NODC Accession 0000650)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — CTD, bottle, and other data were collected from the PANULIRUS and other platforms from repetitive occupations of a hydrographic station off St. George's, Bermuda....

Use of ethanol in public urban transport: BEST (BioEthanol for Sustainable Transport) Project; Uso de etanol no transporte publico urbano: projeto BEST (Bio Ethanol para o Transporte Sustentavel)

Energy Technology Data Exchange (ETDEWEB)

Moreira, Jose Roberto; Apolinario, Sandra; Pecora, Vanessa [Universidade de Sao Paulo (CENBIO/USP), SP (Brazil). Inst. de Eletrotecnica e Energia. Centro Nacional de Referencia em Biomassa; Velazquez, Silvia [Universidade Presbiteriana Mackenzie, Sao Paulo, SP (Brazil)

2008-07-01

This paper present the BEST project - Bio Ethanol for Sustainable Transport, that aims to promote the ethanol usage, replacing diesel, in the urban public transport in Brazil and worldwide. Apart from Sao Paulo, leading city in the Americas, another eight cities located in Europe and Asia takes part in the project. One of the Brazilian project's goals is to evaluate ethanol usage as diesel fuel replacement in public transport buses by comparatively following the operational output of the experimental fleet, taking as reference an equivalent diesel bus. The utilized test vehicles will be evaluated and monitored to demonstrate ethanol energetic efficiency and, after the results the BEST project and the European Union will set a blue print for public policies to incentive ethanol usage in the urban public transport. The results will allow identifying technical and economical barriers that will eventually overlap the viability process of this technology in the Brazilian public transport. (author)

Use of ethanol in public urban transport: BEST (BioEthanol for Sustainable Transport) Project; Uso de etanol no transporte publico urbano: projeto BEST (Bio Ethanol para o Transporte Sustentavel)

Energy Technology Data Exchange (ETDEWEB)

Moreira, Jose Roberto; Apolinario, Sandra; Pecora, Vanessa [Universidade de Sao Paulo (CENBIO/USP), SP (Brazil). Inst. de Eletrotecnica e Energia. Centro Nacional de Referencia em Biomassa; Velazquez, Silvia [Universidade Presbiteriana Mackenzie, Sao Paulo, SP (Brazil)

2008-07-01

This paper present the BEST project - Bio Ethanol for Sustainable Transport, that aims to promote the ethanol usage, replacing diesel, in the urban public transport in Brazil and worldwide. Apart from Sao Paulo, leading city in the Americas, another eight cities located in Europe and Asia takes part in the project. One of the Brazilian project's goals is to evaluate ethanol usage as diesel fuel replacement in public transport buses by comparatively following the operational output of the experimental fleet, taking as reference an equivalent diesel bus. The utilized test vehicles will be evaluated and monitored to demonstrate ethanol energetic efficiency and, after the results the BEST project and the European Union will set a blue print for public policies to incentive ethanol usage in the urban public transport. The results will allow identifying technical and economical barriers that will eventually overlap the viability process of this technology in the Brazilian public transport. (author)

Bio-technologies; Biotechnologies

Energy Technology Data Exchange (ETDEWEB)

Grawitz, X. [Systems Bio Industries, 92 - Boulogne Billancourt (France)

1997-12-31

This paper is a series of transparencies which describes the measures taken by Systems Bio-Industries company to adapt its central heating plants, turbines, engines and dryers to the new French 2910 by-law about thermal efficiency and environmental impact of heating plants. The project of development of a cogeneration system in the Angouleme site is briefly described. (J.S.)

Block matching 3D random noise filtering for absorption optical projection tomography

International Nuclear Information System (INIS)

Fumene Feruglio, P; Vinegoni, C; Weissleder, R; Gros, J; Sbarbati, A

2010-01-01

Absorption and emission optical projection tomography (OPT), alternatively referred to as optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT), are recently developed three-dimensional imaging techniques with value for developmental biology and ex vivo gene expression studies. The techniques' principles are similar to the ones used for x-ray computed tomography and are based on the approximation of negligible light scattering in optically cleared samples. The optical clearing is achieved by a chemical procedure which aims at substituting the cellular fluids within the sample with a cell membranes' index matching solution. Once cleared the sample presents very low scattering and is then illuminated with a light collimated beam whose intensity is captured in transillumination mode by a CCD camera. Different projection images of the sample are subsequently obtained over a 360 0 full rotation, and a standard backprojection algorithm can be used in a similar fashion as for x-ray tomography in order to obtain absorption maps. Because not all biological samples present significant absorption contrast, it is not always possible to obtain projections with a good signal-to-noise ratio, a condition necessary to achieve high-quality tomographic reconstructions. Such is the case for example, for early stage's embryos. In this work we demonstrate how, through the use of a random noise removal algorithm, the image quality of the reconstructions can be considerably improved even when the noise is strongly present in the acquired projections. Specifically, we implemented a block matching 3D (BM3D) filter applying it separately on each acquired transillumination projection before performing a complete three-dimensional tomographical reconstruction. To test the efficiency of the adopted filtering scheme, a phantom and a real biological sample were processed. In both cases, the BM3D filter led to a signal-to-noise ratio increment of over 30 d

Examining the Impact of a Public Health Message on Fish Consumption in Bermuda.

Directory of Open Access Journals (Sweden)

Catherine McLean Pirkle

Full Text Available In 2003 mean cord blood mercury concentrations in pregnant Bermudian women exceeded levels associated with adverse health outcomes in children. The principal mercury source was local fish species. Public health messages were developed suggesting pregnant women reduce consumption of fish species with higher mercury concentrations (e.g. swordfish, substituting species containing lower mercury concentrations, and elevated omega-3 fatty acids (e.g. anchovies. Recent evidence indicates mercury concentrations in Bermuda's pregnant women have fallen five- fold.Assess whether changes in women's fish eating patterns during pregnancy are consistent with the public health messaging. Determine who is making changes to their diet during pregnancy and why.Mixed methods study with a cross-sectional survey of 121 pregnant women, including 13 opened-ended interviews. Health system, social vulnerability, public health messaging, and socio-demographic variables were characterized and related to changes in fish consumption during pregnancy. Qualitative data were coded according to nutritional advice messages, comprehension of communication strategies, and sources of information.95% of women surveyed encountered recommendations about fish consumption during pregnancy. 75% reported modifying fish eating behaviors because of recommendations. Principal sources of information about fish consumption in pregnancy were health care providers and the Internet. 71% of women reported reducing consumption of large fish species with greater mercury levels, but 60% reported reduced consumption of smaller, low mercury fish. No participant mentioned hearing about the benefits of fish consumption. More frequent exposure to public health messages during pregnancy was associated with lower reported consumption. Bermudian born women were less likely to reduce consumption of large fish species during pregnancy.In Bermuda, public health messages advocating reduced consumption of larger

The Multilateral Disarmament Process. Conference on the United Nations of the Next Decade (16th, Warwick, Bermuda, June 21-26, 1981).

Science.gov (United States)

Stanley Foundation, Muscatine, IA.

This is a report of a conference held in Bermuda in 1981 to discuss a multilateral approach to disarmament. The conference was an informal, off-the-record exchange of ideas and opinions among 24 diplomats and scholars from 18 countries and two international agencies. Participants considered current disarmament concepts, assessed UN disarmament…

Engineering BioBrick vectors from BioBrick parts

Directory of Open Access Journals (Sweden)

Knight Thomas F

2008-04-01

Full Text Available Abstract Background The underlying goal of synthetic biology is to make the process of engineering biological systems easier. Recent work has focused on defining and developing standard biological parts. The technical standard that has gained the most traction in the synthetic biology community is the BioBrick standard for physical composition of genetic parts. Parts that conform to the BioBrick assembly standard are BioBrick standard biological parts. To date, over 2,000 BioBrick parts have been contributed to, and are available from, the Registry of Standard Biological Parts. Results Here we extended the same advantages of BioBrick standard biological parts to the plasmid-based vectors that are used to provide and propagate BioBrick parts. We developed a process for engineering BioBrick vectors from BioBrick parts. We designed a new set of BioBrick parts that encode many useful vector functions. We combined the new parts to make a BioBrick base vector that facilitates BioBrick vector construction. We demonstrated the utility of the process by constructing seven new BioBrick vectors. We also successfully used the resulting vectors to assemble and propagate other BioBrick standard biological parts. Conclusion We extended the principles of part reuse and standardization to BioBrick vectors. As a result, myriad new BioBrick vectors can be readily produced from all existing and newly designed BioBrick parts. We invite the synthetic biology community to (1 use the process to make and share new BioBrick vectors; (2 expand the current collection of BioBrick vector parts; and (3 characterize and improve the available collection of BioBrick vector parts.

Asymmetry in Lotto carpets and its implication for Hockney's optical projection theory

Science.gov (United States)

Stork, David G.

2005-03-01

Recently the artist David Hockney theorized that some European painters as early as 1420 used concave mirrors and, later, converging lenses, to project real inverted images onto their canvases or other supports which they then traced and painted over. We consider a specific painting adduced as the primary evidence for this bold theory by Hockney and his collaborator, thin-film physicist Charles Falco: Lorenzo Lotto"s Husband and wife (c. 1543). These projection theorists attribute perspective anomalies in the painting to Lotto repositioning a concave mirror, specifically to overcome its limitations in depth of field. Their analysis lies thoroughly and crucially upon the assumption that the physical carpet pattern was symmetric. We point to a study of "Lotto carpets" surviving in museum collections that shows that these comparison carpets are significantly asymmetric. There seems to be no persuasive independent evidence to support the projection proponents" assumption that these carpets, hand-knotted by children in 16th-century Turkey, were symmetric. Moreover, the angular asymmetries in these surviving carpets are nearly the same as those corresponding to the anomalies in the painting, strongly suggesting that these "anomalies" are in fact due to inherent carpet asymmetries, not to changes in configuration of an optical projector. We show that a non-optical explanation can fit the visual evidence with a precision roughly equal to that of the projection theory, but without the need to invoke a complicated, undocumented optical system. Finally, had Lotto used such an optical projector, we would expect both the general historical documentary record and Lotto"s own writings to indicate as much; however no such corroboratory evidence exists. We conclude by rejecting the numerous claims of "proof" that Lotto used optical projections when executing this painting.

BioPhotonics Workstation: a university tech transfer challenge

DEFF Research Database (Denmark)

Glückstad, Jesper; Bañas, Andrew Rafael; Tauro, Sandeep

2011-01-01

Conventional optical trapping or tweezing is often limited in the achievable trapping range because of high numerical aperture and imaging requirements. To circumvent this, we are developing a next generation BioPhotonics Workstation platform that supports extension modules through a long working...

Enabling Bio-Innovation for Poverty Alleviation in Asia | IDRC ...

International Development Research Centre (IDRC) Digital Library (Canada)

At first glance, Asia seems to have all the organizations, skills, policies and facilities essential for bio-innovation. However, these are not generally put to the service of the millions of poor who lack access to technology. This project aims to stimulate research on bio-innovation for poverty alleviation, sustainable employment ...

Topology optimization for optical projection lithography with manufacturing uncertainties

DEFF Research Database (Denmark)

Zhou, Mingdong; Lazarov, Boyan Stefanov; Sigmund, Ole

2014-01-01

to manufacturing without additional optical proximity correction (OPC). The performance of the optimized device is robust toward the considered process variations. With the proposed unified approach, the design for photolithography is achieved by considering the optimal device performance and manufacturability......This article presents a topology optimization approach for micro-and nano-devices fabricated by optical projection lithography. Incorporating the photolithography process and the manufacturing uncertainties into the topology optimization process results in a binary mask that can be sent directly...

Hypothalamic Projections to the Optic Tectum in Larval Zebrafish

Science.gov (United States)

Heap, Lucy A.; Vanwalleghem, Gilles C.; Thompson, Andrew W.; Favre-Bulle, Itia; Rubinsztein-Dunlop, Halina; Scott, Ethan K.

2018-01-01

The optic tectum of larval zebrafish is an important model for understanding visual processing in vertebrates. The tectum has been traditionally viewed as dominantly visual, with a majority of studies focusing on the processes by which tectal circuits receive and process retinally-derived visual information. Recently, a handful of studies have shown a much more complex role for the optic tectum in larval zebrafish, and anatomical and functional data from these studies suggest that this role extends beyond the visual system, and beyond the processing of exclusively retinal inputs. Consistent with this evolving view of the tectum, we have used a Gal4 enhancer trap line to identify direct projections from rostral hypothalamus (RH) to the tectal neuropil of larval zebrafish. These projections ramify within the deepest laminae of the tectal neuropil, the stratum album centrale (SAC)/stratum griseum periventriculare (SPV), and also innervate strata distinct from those innervated by retinal projections. Using optogenetic stimulation of the hypothalamic projection neurons paired with calcium imaging in the tectum, we find rebound firing in tectal neurons consistent with hypothalamic inhibitory input. Our results suggest that tectal processing in larval zebrafish is modulated by hypothalamic inhibitory inputs to the deep tectal neuropil. PMID:29403362

Hypothalamic Projections to the Optic Tectum in Larval Zebrafish

Directory of Open Access Journals (Sweden)

Lucy A. Heap

2018-01-01

Full Text Available The optic tectum of larval zebrafish is an important model for understanding visual processing in vertebrates. The tectum has been traditionally viewed as dominantly visual, with a majority of studies focusing on the processes by which tectal circuits receive and process retinally-derived visual information. Recently, a handful of studies have shown a much more complex role for the optic tectum in larval zebrafish, and anatomical and functional data from these studies suggest that this role extends beyond the visual system, and beyond the processing of exclusively retinal inputs. Consistent with this evolving view of the tectum, we have used a Gal4 enhancer trap line to identify direct projections from rostral hypothalamus (RH to the tectal neuropil of larval zebrafish. These projections ramify within the deepest laminae of the tectal neuropil, the stratum album centrale (SAC/stratum griseum periventriculare (SPV, and also innervate strata distinct from those innervated by retinal projections. Using optogenetic stimulation of the hypothalamic projection neurons paired with calcium imaging in the tectum, we find rebound firing in tectal neurons consistent with hypothalamic inhibitory input. Our results suggest that tectal processing in larval zebrafish is modulated by hypothalamic inhibitory inputs to the deep tectal neuropil.

METHODS OF TAXATION IN THE TAX HAVENS. EXAMPLES OF TAXATION IN THE BAHAMAS, BERMUDA AND THE CAYMAN ISLANDS

Directory of Open Access Journals (Sweden)

ENEA CONSTANTIN

2015-12-01

Full Text Available We should never trust appearances: "the drum, with all the noise it makes is not only filled with wind"[1]. This old oriental proverb perfectly illustrates our proposal regarding the "true false" tax havens. Only at the beginning of this century, learned before firms to exercise their activity in the national territory, returned to international trade. The continuous search for new outlets to escape the growing production, export them first and then they were implanted overseas sales platforms and then installing production. Zero Haven sites or havens with zero tax consisting essentially of small economies, the British colonies (Cayman Islands, British Virgin Islands, dependent territories of the Commonwealth (Bermuda or territories became independent (Antigua, Bahamas 1963 or Vanuatu 1980. Our study will analyze tax havens most common: Bahamas, Bermuda or the Cayman Islands, where we find all models of reception that can be viewed in other areas zero-haven: International Business Companies (Antigua, the Virgin Islands, Nevis exemption schemes to insurance companies or banks (Barbados, Vanuatu. The subject of tax evasion subject of much debate, targeting both the domestic economic space and the world. Unlike their concerns globally, domestic concerns to reduce tax evasion resumes, especially on taxation of small businesses, avoiding knowingly scope of tax havens.

Bio-Optical Properties of the Inner Continental Shelf off Santos Estuarine System, Southeastern Brazil, and their Implications for Ocean Color Algorithm Performance

Directory of Open Access Journals (Sweden)

Melissa Carvalho

2014-07-01

Full Text Available Optical characterizations of coastal water masses are important tools for a better understanding of physical and biochemical processes and aid the optimization of ocean color algorithms. In this study we present three optical classes of water observed during October/2005 and March/2006 on the inner continental shelf adjacent to Santos Bay (Brazil, based on remote sensing reflectance. ANOVA indicated a crescent estuarine influence in classes 1 to 3. Class 3 presented the highest chlorophyll-a and nutrient concentration and highest light absorption coefficients. Colored dissolved organic matter (CDOM dominated the light absorption in all classes and was strongly correlated to salinity in October/2005 due to the influence of the La Plata plume. The results indicated that CDOM dynamics in the Santos inner shelf are very complex. The performance of global chlorophyll algorithms was significantly smaller for October/2005 than for March/2006. As inconsistent changes in light absorption spectra by phytoplankton were detected between samplings, the results show that future bio-optical algorithms for this region must be optimized preferentially considering CDOM optical parameters.

The international validation of bio- and chemical-anlaytical screening methods for dioxins and dioxin-like PCBs: the DIFFERENCE project rounds 1 and 2

NARCIS (Netherlands)

Loco, van J.; Leeuwen, van S.P.J.; Roos, P.; Carbonnelle, S.; Boer, de J.; Goeyens, L.; Beernaert, H.

2004-01-01

The European research project DIFFERENCE is focussed on the development, optimisation and validation of screening methods for dioxin analysis, including bio-analytical and chemical techniques (CALUX, GC-LRMS/MS, GC x GC-ECD) and on the optimisation and validation of new extraction and clean-up

Transistor amplifier as an electrochemical transducer with intuitive optical read-out: Improving its performance with simple electronic solutions

Czech Academy of Sciences Publication Activity Database

Lacina, K.; Žák, J.; Sopoušek, J.; Szabó, Z.; Václavek, Tomáš; Žeravík, J.; Fiala, P.; Skládal, P.

2016-01-01

Roč. 216, OCT (2016), s. 147-151 ISSN 0013-4686 R&D Projects: GA ČR GA13-09086S; GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : electrochemical transducer transistor * operational amplifier * optical read-out * ( bio )sensing Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.798, year: 2016

Transistor amplifier as an electrochemical transducer with intuitive optical read-out: Improving its performance with simple electronic solutions

Czech Academy of Sciences Publication Activity Database

Lacina, K.; Žák, J.; Sopoušek, J.; Szabó, Z.; Václavek, Tomáš; Žeravík, J.; Fiala, P.; Skládal, P.

2016-01-01

Roč. 216, OCT (2016), s. 147-151 ISSN 0013-4686 R&D Projects: GA ČR GA13-09086S; GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : electrochemical transducer transistor * operational amplifier * optical read-out * (bio)sensing Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.798, year: 2016

BioSig: the free and open source software library for biomedical signal processing.

Science.gov (United States)

Vidaurre, Carmen; Sander, Tilmann H; Schlögl, Alois

2011-01-01

BioSig is an open source software library for biomedical signal processing. The aim of the BioSig project is to foster research in biomedical signal processing by providing free and open source software tools for many different application areas. Some of the areas where BioSig can be employed are neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems, and sleep research. Moreover, the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), or respiration signals is a very relevant element of the BioSig project. Specifically, BioSig provides solutions for data acquisition, artifact processing, quality control, feature extraction, classification, modeling, and data visualization, to name a few. In this paper, we highlight several methods to help students and researchers to work more efficiently with biomedical signals.

THE CONCEPTUAL DESIGN ASSESSMENT FOR THE CO-FIRING OF BIO-REFINERY SUPPLIED LIGNIN PROJECT

International Nuclear Information System (INIS)

Ted Berglund; Jeffrey T. Ranney; Carol L. Babb; Jacqueline G. Broder

2001-01-01

The major aspects of this project are proceeding toward completion. Prior to this quarter, design criteria, tentative site selection, facility layout, and preliminary facility cost estimates were completed and issued. Processing of bio-solids was completed, providing material for the pilot operations. Pilot facility design, equipment selection, and modification were completed during the fourth quarter of 2000. Initial pilot facility shakedown was completed during the fourth quarter. After some unavoidable delays, a suitable representative supply of MSW feed material was procured. During this first quarter of 2001, shredding of the feed material and final feed conditioning were completed. Pilot facility hydrolysis production was completed to produce lignin for co-fire testing. During this quarter, TVA completed the washing and dewatering of the lignin material produced from the MSW hydrolysis. Seven drums of lignin material were washed to recover the acid and sugar from the lignin and provide an improved fuel for steam generation. Samples of both the lignin and bio-solids fuel materials for co-fire testing were sent to the co-fire facility (EERC) for evaluation. After sample evaluation, EERC approved sending the material and all of the necessary fuel for testing was shipped to EERC. EERC has requested and will receive coal typical of the fuel to the TVA-Colbert boilers. This material will be used at EERC as baseline material and for mixing with the bio-fuel for combustion testing. EERC combustion testing of the bio based fuels is scheduled to begin in August of 2001. The TVA-Colbert facility has neared completion of the task to evaluate the co-location of the Masada facility on the operation of the power generation facility. The TVA-Colbert fossil plant is fully capable of providing a reliable steam supply. The preferred steam supply connection points and steam pipeline routing have been identified. The environmental review of the pipeline routing has been completed

Bio-based targeted chemical engineering education : Role and impact of bio-based energy and resourcedevelopment projects

NARCIS (Netherlands)

N.M. Márquez Luzardoa; Dr. ir. Jan Venselaar

2012-01-01

Avans University of Applied Sciences is redrafting its courses and curricula in view of sustainability. For chemical engineering in particular that implies a focus on 'green' and bio-based processes, products and energy. Avans is situated in the Southwest region of the Netherlands and specifically

Cooperative educational project for optical technicians utilizing amateur telescope making

Science.gov (United States)

Williamson, Ray

2004-01-01

In the modern optical shop, technicians are typically skilled machine operators who work on only one phase of the manufacture for each and every component. The product is designed, specified, methodized, scheduled and integrated by people off the shop floor. Even at the component level, the people inside the shop usually see only one stage of completion. In an effort to make the relevance of their work visible; to demonstrate competence to their peers; to gain appreciation for the work of others; and to give them a meaningful connection with the functions of optical systems, I created "The Telescope Project" for my former employer. I invited those interested to participate in an after-hours, partially subsidized project to build telescopes for themselves. The ground-rules included that we would all make the same design (thus practicing consensus and configuration management); that we would all work on every phase (thus learning from each other); and that we would obtain our parts by random lot at the end (thus making quality assurance a personal issue). In the process the participating technicians learned about optical theory, design, tolerancing, negotiation, scheduling, purchasing, fabrication, coating and assembly. They developed an appreciation for each other's contributions and a broader perspective on the consequences of their actions. In the end, each obtained a high-quality telescope for his or her personal use. Several developed an abiding love for astronomy. The project generated much interest from technicians who didn"t initially choose to participate. In this paper I describe the project in detail.

Bio-functionalization of silicon nitride-based piezo-resistive ...

Indian Academy of Sciences (India)

Methods of bio-functionalize silicon nitride involve process steps to ... substance in applications such as clinical analysis, environmental control and industrial pro- ... anisms could be optical (measure the deflection), or measurement of a change in ... point of care (PoC), and the instrumentation involved is quite sophisticated.

Permeable bio-reactive barriers for hydrocarbon remediation in Antarctica

Energy Technology Data Exchange (ETDEWEB)

Mumford, K.A.; Stevens, G.W.; Gore, D.B. [Melbourne Univ., Victoria (Australia). Dept. of Chemical and Biomoleculuar Engineering, Particulate Fluids Processing Centre; Snape, I.; Rayner, J.L. [Australian Antarctic Div., Kingston, Tasmania (Australia); Gore, D.B. [Macquarie Univ., Sydney, NSW (Australia). Dept. of Environmental Science

2010-07-01

This study assessed the performance of a permeable bio-reactive barrier designed to treat contaminated water. The bio-reactive barrier was installed at a fuel spill site located in the Windmill Islands, Antarctica. A funnel and gate design was used to prevent contaminant migration beyond the barrier location as well as to ensure controlled nutrient delivery. The study also investigated the performance of the bio-reactive barrier in regions with freeze-thaw conditions. The 4-year project was also conducted to assess optimal conditions for enhancing the barrier's ability to degrade hydrocarbons.

The World Banks' BioCarbon Fund

Energy Technology Data Exchange (ETDEWEB)

Noble, I.

2003-03-01

In November 2002 the World Bank launched the BioCarbon Fund, a public/private initiative to provide finance to projects that store carbon in vegetation and soils ('sinks') while helping to reverse land degradation, conserve biodiversity and improve the livelihoods of local communities. The Fund will seek projects to sequester or conserve carbon in non-Annex I countries and in countries in transition. Sinks may be the only option for poor nations with small energy to benefit from the carbon finance business. The Fund will include a portion of assets based on reductions in emissions such as substitution of biofuels for fossil fuels. The author Ian Noble of the World Bank, is chairman of the BioCarbon Fund Technical Advisory Committee.

Bio-oil fueled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A. [Modigen Oy, Helsinki (Finland)

1995-12-31

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 and 1997 pyrolysis oil made of wood will be tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Bio-oil fueled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A [Modigen Oy, Helsinki (Finland)

1996-12-31

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 and 1997 pyrolysis oil made of wood will be tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Bio-oil fuelled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A [Modigen Oy, Helsinki (Finland)

1997-12-01

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 pyrolysis oil made of wood was tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Multiple projection optical diffusion tomography with plane wave illumination

International Nuclear Information System (INIS)

Markel, Vadim A; Schotland, John C

2005-01-01

We describe a new data collection scheme for optical diffusion tomography in which plane wave illumination is combined with multiple projections in the slab imaging geometry. Multiple projection measurements are performed by rotating the slab around the sample. The advantage of the proposed method is that the measured data are more compatible with the dynamic range of most commonly used detectors. At the same time, multiple projections improve image quality by mutually interchanging the depth and transverse directions, and the scanned (detection) and integrated (illumination) surfaces. Inversion methods are derived for image reconstructions with extremely large data sets. Numerical simulations are performed for fixed and rotated slabs

A Gold Nanoparticle Bio-Optical Transponder to Dynamically Monitor Intracellular pH.

Science.gov (United States)

Carnevale, Kate J F; Riskowski, Ryan A; Strouse, Geoffrey F

2018-06-13

A pH-sensitive bio-optical transponder (pH-BOT) capable of simultaneously reporting the timing of intracellular DNA cargo release from a gold nanoparticle (AuNP) and the evolving intracellular pH (pH i) during endosomal maturation is demonstrated. The pH-BOT is designed with a triple-dye-labeled duplex DNA appended to a 6.6 nm AuNP, utilizing pH-responsive fluorescein paired with DyLight405 as a surface energy transfer (SET) coupled dye pair to ratiometrically report the pH at and after cargo release. A non-SET-coupled dye, DyLight 700, is used to provide dynamic tracking throughout the experiment. The pH-BOT beacon of the cargo uptake, release, and processing was visualized using live-cell confocal fluorescent microscopy in Chinese hamster ovary cells, and it was observed that while maturation of endosomes carrying pH-BOT is slowed significantly, the pH-BOT is distributed throughout the endolysosomal system while remaining at pH ∼6. This observed decoupling of endosomal maturation from acidification lends support to those models that propose that pH alone is not sufficient to explain endosomal maturation and may enable greater insight into our understanding of the fundamental processes of biology.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Directory of Open Access Journals (Sweden)

Katayama Toshiaki

2010-08-01

Full Text Available Abstract Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS and Computational Biology Research Center (CBRC and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies.

Workflow and web application for annotating NCBI BioProject transcriptome data.

Science.gov (United States)

Vera Alvarez, Roberto; Medeiros Vidal, Newton; Garzón-Martínez, Gina A; Barrero, Luz S; Landsman, David; Mariño-Ramírez, Leonardo

2017-01-01

The volume of transcriptome data is growing exponentially due to rapid improvement of experimental technologies. In response, large central resources such as those of the National Center for Biotechnology Information (NCBI) are continually adapting their computational infrastructure to accommodate this large influx of data. New and specialized databases, such as Transcriptome Shotgun Assembly Sequence Database (TSA) and Sequence Read Archive (SRA), have been created to aid the development and expansion of centralized repositories. Although the central resource databases are under continual development, they do not include automatic pipelines to increase annotation of newly deposited data. Therefore, third-party applications are required to achieve that aim. Here, we present an automatic workflow and web application for the annotation of transcriptome data. The workflow creates secondary data such as sequencing reads and BLAST alignments, which are available through the web application. They are based on freely available bioinformatics tools and scripts developed in-house. The interactive web application provides a search engine and several browser utilities. Graphical views of transcript alignments are available through SeqViewer, an embedded tool developed by NCBI for viewing biological sequence data. The web application is tightly integrated with other NCBI web applications and tools to extend the functionality of data processing and interconnectivity. We present a case study for the species Physalis peruviana with data generated from BioProject ID 67621. URL: http://www.ncbi.nlm.nih.gov/projects/physalis/. Published by Oxford University Press 2017. This work is written by US Government employees and is in the public domain in the US.

Bio-Park Pereira [Colombia]: Flora and Fauna Parkland

Directory of Open Access Journals (Sweden)

Juan Carlos de León Naranjo

2012-04-01

Full Text Available The project aims to build a parkland in the sub-urban area of Pereira, (Cerritos sector in the center of the Coffee Region of Colombia, which in addition to its tourism and recreation, contributes to the conservation of wildlife through education, research, and ecologically viable actions, economically viable and socially equitable. This project is considered a major project for the city of Pereira, as it strives to be a tourist attraction level not just regionally but nationally and internationally, which will close and friendly interaction with native flora and fauna and exotic providing healthy recreation while promoting the preservation of biodiversity. In Bio-parque be plotted four bio-regions: African Savanna, African Rainforest, Asian mangroves, South American Cliffs, and three bio-regions of Colombia: Andean Forest, Arid Caribbean and Amazon. Human cultures of each of these regions are also highlighted as examples of the wide adaptability of human beings. The main objective of the educational message in Bioparque is to show how the survival and welfare of living beings, both human and of animal and plant species depend on the knowledge and awareness of natural history, dynamics and accurate management of their different living conditions interaction.

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

Science.gov (United States)

Kim, Sun; Islamaj Doğan, Rezarta; Chatr-Aryamontri, Andrew; Chang, Christie S; Oughtred, Rose; Rust, Jennifer; Batista-Navarro, Riza; Carter, Jacob; Ananiadou, Sophia; Matos, Sérgio; Santos, André; Campos, David; Oliveira, José Luís; Singh, Onkar; Jonnagaddala, Jitendra; Dai, Hong-Jie; Su, Emily Chia-Yu; Chang, Yung-Chun; Su, Yu-Chen; Chu, Chun-Han; Chen, Chien Chin; Hsu, Wen-Lian; Peng, Yifan; Arighi, Cecilia; Wu, Cathy H; Vijay-Shanker, K; Aydın, Ferhat; Hüsünbeyi, Zehra Melce; Özgür, Arzucan; Shin, Soo-Yong; Kwon, Dongseop; Dolinski, Kara; Tyers, Mike; Wilbur, W John; Comeau, Donald C

2016-01-01

BioC is a simple XML format for text, annotations and relations, and was developed to achieve interoperability for biomedical text processing. Following the success of BioC in BioCreative IV, the BioCreative V BioC track addressed a collaborative task to build an assistant system for BioGRID curation. In this paper, we describe the framework of the collaborative BioC task and discuss our findings based on the user survey. This track consisted of eight subtasks including gene/protein/organism named entity recognition, protein-protein/genetic interaction passage identification and annotation visualization. Using BioC as their data-sharing and communication medium, nine teams, world-wide, participated and contributed either new methods or improvements of existing tools to address different subtasks of the BioC track. Results from different teams were shared in BioC and made available to other teams as they addressed different subtasks of the track. In the end, all submitted runs were merged using a machine learning classifier to produce an optimized output. The biocurator assistant system was evaluated by four BioGRID curators in terms of practical usability. The curators' feedback was overall positive and highlighted the user-friendly design and the convenient gene/protein curation tool based on text mining.Database URL: http://www.biocreative.org/tasks/biocreative-v/track-1-bioc/. Published by Oxford University Press 2016. This work is written by US Government employees and is in the public domain in the US.

Agrice 2004. Activity report - from bio-resources to industry

International Nuclear Information System (INIS)

2005-01-01

It has been ten years since AGRICE was founded to support technological research in the field of bio-products. Even if bio-products are indeed a commercial reality, and growing in diversity, they are still marginal in the marketplace. However, the amplification of the greenhouse effect, our increasing energy dependence, the inexorable rise in oil prices, international competition and the emergence of a genuine political awareness are all factors that converge in favour of bio-products, offering a promising future. Of course, the development of bio-products is dependent on a number of conditions: biomass resources, technological advances, mobilisation of actors through dynamic research programmes (conversion of lignocellulosic biomass for alternative fuels or hydrogen, bio-technology applied to chemicals), new agro-industrial supply chains, financial instruments to bridge the cost gap with fossil fuels, a national strategy supported by a public authority dedicated to non-food uses. In the immediate future, the recent decision to open up the biofuels market via implementation of the European biofuels directive (5.75% of the market in 2010) provides an opportunity to lay the groundwork for a veritable industry of plant-based products, opening the way to the bio-refineries of the future. There is considerable potential for the development of bio-products in France. An additional 25 to 30 million tonnes-oil-equivalent (toe) of agricultural and forestry biomass could be processed into energy and industrial bio-products in France. Accordingly we can set our sights on an overall objective of substituting plant feedstocks for petroleum used in fuels and chemicals, on the order of 10% in 2020, and 20 to 30% by 2030-2050. To achieve these goals many technological advances will be necessary, with constant attention to the requirements of sustainable development. In this respect AGRICE is an invaluable tool for guiding, catalysing and supporting research efforts in these fields

Bio politics - The bio-environment - bio-culture of the Danube

International Nuclear Information System (INIS)

Vlavianos-Arvanitis, A.

1997-01-01

The bio-environment has been the single most important correlation in human history and can successfully promote international co-operational co-operation and understanding. With the construction of a network for collaboration, the 'Danube Countries' can come together in celebration of their culture and heritage. As the Danube flows from the Black Forest to the Black Sea, it carries messages of peace, hope and co-operation. Applying these messages to every endeavour can improve our quality of life and lead to a brighter future. Since its inception in 1985, the Bio politics International Organization (B.I.O.) has been labouring to raise awareness of the urgent need to instate a new system of norms and principles, compatible with sound environmental management and with the most important task of ensuring global literacy on environmental issues. Along with critically re-assessing the concept of profit, the goal is to adopt a system of bio centric values, where respect for the bio-environment will govern our every action and thought

Bio-engineering in the Baltic Sea

DEFF Research Database (Denmark)

Zandersen, Marianne

2011-01-01

Bio-engineering in the Baltic Sea – value of water quality improvements & risk perceptions Dr. Marianne Zandersen1 Department of Environmental Science, Aarhus University Abstract The Baltic Sea is heavily eutrofied and the trend has gone from bad to worse. The hypoxic zone has increased about 4...... of the water column to the bottom waters/deepwater. The expected effects include a slowing down of the sediment release from the bottom and improvement of the possibilities for aerobic bacterial decomposition and over time for the establishment of fauna. The projects test a bio-engineered approach to speeding...

BioBoost. Biomass based energy intermediates boosting bio-fuel production

Energy Technology Data Exchange (ETDEWEB)

Niebel, Andreas [Karlsruher Institut fuer Technologie (KIT), Karlsruhe (Germany). Institut fuer Katalyseforschung und -technologie (IKFT)

2013-10-01

To increase the share of biomass for renewable energy in Europe conversion pathways which are economic, flexible in feedstock and energy efficient are needed. The BioBoost project concentrates on dry and wet residual biomass and wastes as feedstock for de-central conversion by fast pyrolysis, catalytic pyrolysis and hydrothermal carbonization to the intermediate energy carriers oil, coal or slurry. Based on straw the energy density increases from 2 to 20-30 GJ/m{sup 3}, enabling central GW scale gasification plants for bio-fuel production. A logistic model for feedstock supply and connection of de-central with central conversion is set up and validated allowing the determination of costs, the number and location of de-central and central sites. Techno/economic and environmental assessment of the value chain supports the optimization of products and processes. The utilization of energy carriers is investigated in existing and coming applications of heat and power production and synthetic fuels and chemicals. (orig.)

Bio-SNG. Prospective renewable energy carrier in the E.ON gas grid; Bio-SNG. Zukuenftiger regenerativer Energietraeger im E.ON Gasnetz

Energy Technology Data Exchange (ETDEWEB)

Adelt, Marius; Vogel, Alexander [E.ON Ruhrgas AG, Essen (Germany)

2010-10-15

Biogas processing and injection into the natural gas pipeline system on an industrial scale has been around in Germany for some time. E.ON operates a number of biogas plants with a production capacity of 200-1700 m{sup 3}/h. More plants are under construction or planned. The German government is looking to increase the share of biogas (upgraded to natural gas quality) in the pipeline system to 6 billion m{sup 3}/a by 2020, so significantly more production capacity is needed. Biogas is produced mainly from dedicated energy crops (maize) as well as several catch crops and, depending on the processing plant, various amounts of bio residues. The biogas is upgraded to natural gas quality and fed into the pipeline system as biomethane (E.ON: bio natural gas). To achieve the ambitious production targets it will be necessary to tap the unused potential of wood for gasification and subsequent methanisation into bio-SNG. E.ON AG actively promotes the development and introduction of this technology. This article provides an overview of different aspects of bio-SNG production and use including: Utilisation paths for biomethane/bio-SNG (heat, fuel, CHP), Potential of wood for bio-SNG production, Bio-SNG production technologies, Current E.ON activities and projects. (orig.)

Supporting Collective Training & Thinking in Joint Project Optic Windmill

NARCIS (Netherlands)

Jacobs, L.R.M.A.; Wiel, R.A.N. van de; Bosch, J.; Olthoff, R.

2009-01-01

In September 2008, the Missile Defence Group of the Royal Netherlands Air Force, together with the German Air Force and the US Missile Defence Agency, organised the 10th edition of Exercise Joint Project Optic Windmill (JPOW). Over the past decade JPOW has become a world leading Integrated Air and

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Czech Academy of Sciences Publication Activity Database

Pospíšilová, M.; Kuncová, Gabriela; Trögl, J.

2015-01-01

Roč. 15, č. 10 (2015), s. 25208-25259 ISSN 1424-8220 Institutional support: RVO:67985858 Keywords : fiber-optic sensor * chemical sensors * enzymatic sensor Subject RIV: JB - Sensors, Measurment, Regulation Impact factor: 2.033, year: 2015

Understanding the Steric Height Long Term Variability at the Bermuda Atlantic Time-Series Study (BATS) Site with a Neutral Density Approach

Science.gov (United States)

Goncalves Neto, A.; Johnson, R. J.; Bates, N. R.

2016-02-01

Rising sea level is one of the main concerns for human life in a scenario with global atmosphere and ocean warming, which is of particular concern for oceanic islands. Bermuda, located in the center of the Sargasso Sea, provides an ideal location to investigate sea level rise since it has a long term tide gauge (1933-present) and is in close proximity to deep ocean time-series sites, namely, Hydrostation `S' (1954-present) and the Bermuda Atlantic Time-Series Study site (1988-present). In this study, we use the monthly CTD deep casts at BATS to compute the contribution of steric height (SH) to the local sea surface height (SSH) for the past 24 years. To determine the relative contribution from the various water masses we first define 8 layers (Surface Layer, Upper Thermocline, Subtropical Mode-Water, Lower Thermocline, Antarctic Intermediate Water, Labrador Sea Water, Iceland-Scotland Overflow Water, Denmark Strait Overflow Water) based on neutral density criteria for which SH is computed. Additionally, we calculate the thermosteric and halosteric components for each of the defined neutral density layers. Surprisingly, the results show that, despite a 3.3mm/yr sea level rise observed at the Bermuda tide gauge, the steric contribution to the SSH at BATS has decreased at a rate of -1.1mm/yr during the same period. The thermal component is found to account for the negative trend in the steric height (-4.4mm/yr), whereas the halosteric component (3.3mm/yr) partially compensates the thermal signal and can be explained by an overall cooling and freshening at the BATS site. Although the surface layer and the upper thermocline waters are warming, all the subtropical and polar water masses, which represent most of the local water column, are cooling and therefore drive the overall SH contribution to the local SSH. Hence, it suggests that the mass contribution to the local SSH plays an important role in the sea level rise, for which we investigate with GRACE data.

Optical design and testing: introduction.

Science.gov (United States)

Liang, Chao-Wen; Koshel, John; Sasian, Jose; Breault, Robert; Wang, Yongtian; Fang, Yi Chin

2014-10-10

Optical design and testing has numerous applications in industrial, military, consumer, and medical settings. Assembling a complete imaging or nonimage optical system may require the integration of optics, mechatronics, lighting technology, optimization, ray tracing, aberration analysis, image processing, tolerance compensation, and display rendering. This issue features original research ranging from the optical design of image and nonimage optical stimuli for human perception, optics applications, bio-optics applications, 3D display, solar energy system, opto-mechatronics to novel imaging or nonimage modalities in visible and infrared spectral imaging, modulation transfer function measurement, and innovative interferometry.

Bio Optofluidics Cell Sorter – cell-BOCS Concept and Applications

DEFF Research Database (Denmark)

Roth, Tue; Glückstad, Jesper

2012-01-01

The cell-BOCS is a novel microfluidics based cell-sorting instrument utilizing next generation optical trapping technology developed at the Technical University of Denmark. It is targeted emerging bio-medical research and diagnostics markets where it for certain applications offers a number...

Droplet microfluidics in (bio) chemical analysis

Czech Academy of Sciences Publication Activity Database

Basova, E. Y.; Foret, František

2015-01-01

Roč. 140, č. 1 (2015), s. 22-38 ISSN 0003-2654 R&D Projects: GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : droplet chemistry * bio analysis * microfluidics * protein Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.033, year: 2015

EMBIO - The Danish Energy Agency's model for economic and environmental evaluation of bio-fuels. Main report

International Nuclear Information System (INIS)

1997-01-01

A methodological concept is established for a life-cycle based model which can be used for socio- and private economic and environmental assessment of automotive bio-fuels. The calculation method must be able to calculate socio-economic, energy, environmental, and other consequences by alternative productions and uses of bio-fuels in a way that makes it possible to compare advantages and disadvantages across alternative production technologies. Furthermore it must be possible to perform private cost-benefit calculations from the model. The model must also be able to evaluate specific bio-fuel project, and therefore the method has been developed in close interaction with analyses of two bio-fuel projects. The main emphasis in the development of the model has been put on the relation between CO 2 reduction and economics. One main result of the model analyses is therefore the calculated shadow price for the CO 2 reduction which expresses the socio-economic costs per ton saved CO 2 . The socio-economic analyses of the model do not include a monetary account of other environmental impacts than the CO 2 emission or other relevant consequences like impacts on employment, balance of payments etc. Thus the socio-economic analyses cannot be the only decision basis for assessing bio-fuel projects. The other environmental aspects are treated only briefly. The model may, however, very easily be extended to a more formalized account of these other aspects. The model may be used for specific experimental projects and for implementation of large full-scale projects. The model development has been limited to use of bio-fuels in the transportation sector. The model may, however, also be used for evaluating bio-fuels in general or other biomass-based energy use in other sectors. (LN) 113 refs

Identifying bio-physical, social and political challenges to catchment governance for sustainable freshwater fisheries in West Africa: Systems overview through scenario development in the SUSFISH project.

Science.gov (United States)

Sendzimir, Jan; Slezak, Gabriele; Melcher, Andreas

2015-04-01

Chronic and episodic water scarcity prompted construction of 1400 reservoirs in Burkina Faso since 1950, greatly expanding fisheries production. These fisheries provided an increasingly important protein source for a population that has risen 600% since 1920, but production has plateaued, and dramatic declines in adult fish size suggest these fisheries are not sustainable. The SUSFISH project joined Austrian and Burkinabe scientists to increase local capacities to manage fisheries sustainably. SUSFISH has successfully increased capacity to monitor fish populations, identify endangered species, and use specific fish and macroinvertebrate species as bio-indicators of water and habitat quality as well as anthropogenic pressures. But projects to support sustainable development in Africa have a long history of failure if only based on transfer of technology and theory based on bio-physical sciences. This paper describes the processes and products of knowledge elicitation, scenario development and systems analysis to identify barriers and bridges to long-term sustainable fisheries development that arise from bio-physical, social, political and cultural causes, and, especially, interactions between them. Lessons learned and important on-going research questions are identified for both the natural and social sciences as they apply to managing catchments at multiple scales of governance, from local to national.

Bio-based composite pedestrian bridge. Part 2: materials and production process

NARCIS (Netherlands)

Lepelaar, Mark; Hoogendoorn, Alwin; Blok, Rijk; Teuffel, Patrick; Kawaguchi, K.; Ohsaki, M.; Takeuchi, T.

2016-01-01

The Bio-based composite bridge is a 3TU project which aims to design and realize a 14m span pedestrian bridge made from fibre-reinforced polymers (FRP) and which is introduced in part 1 of this paper. Part 2 will focus on various studies about bio-based materials, which are suitable for structural

Nano technologies for Biosensor and Bio chip

International Nuclear Information System (INIS)

Kim, I.M.; Park, T.J.; Paskaleva, E.E.; Sun, F.; Seo, J.W.; Mehta, K.K.

2015-01-01

The bio sensing devices are characterized by their biological receptors, which have specificity to their corresponding analytes. These analytes are a vast and diverse group of biological molecules, DNAs, proteins (such as antibodies), fatty acids, or entire biological systems, such as pathogenic bacteria, viruses, cancerous cells, or other living organisms. A main challenge in the development of biosensor applications is the efficient recognition of a biological signal in a low signal-to-noise ratio environment, and its transduction into an electrochemical, optical, or other signals. The advent of nano material technology greatly increased the potential for achieving exquisite sensitivity of such devises, due to the innate high surface-to-volume ratio and high reactivity of the nano material. The second major challenge facing the biosensor application, that of sca lability, is addressed by multiplexing and miniaturizing of the biosensor devises into a bio chip. In recent years, biosensor and bio chip technologies have made significant progress by taking advantages of diverse kinds of nano materials that are derived from nano technology

Jatropha bio-diesel production and use

International Nuclear Information System (INIS)

Achten, W.M.J.; Aerts, R.; Muys, B.; Verchot, L.; Franken, Y.J.; Mathijs, E.; Singh, V.P.

2008-01-01

The interest in using Jatropha curcas L. (JCL) as a feedstock for the production of bio-diesel is rapidly growing. The properties of the crop and its oil have persuaded investors, policy makers and clean development mechanism (CDM) project developers to consider JCL as a substitute for fossil fuels to reduce greenhouse gas emissions. However, JCL is still a wild plant of which basic agronomic properties are not thoroughly understood and the environmental effects have not been investigated yet. Gray literature reports are very optimistic on simultaneous wasteland reclamation capability and oil yields, further fueling the Jatropha bio-diesel hype. In this paper, we give an overview of the currently available information on the different process steps of the production process of bio-diesel from JCL, being cultivation and production of seeds, extraction of the oil, conversion to and the use of the bio-diesel and the by-products. Based on this collection of data and information the best available practice, the shortcomings and the potential environmental risks and benefits are discussed for each production step. The review concludes with a call for general precaution and for science to be applied. (author)

Jatropha bio-diesel production and use

Energy Technology Data Exchange (ETDEWEB)

Achten, W.M.J.; Aerts, R.; Muys, B. [Katholieke Universiteit Leuven, Division Forest, Nature and Landscape, Celestijnenlaan 200 E Box 2411, BE-3001 Leuven (Belgium); Verchot, L. [World Agroforestry Centre (ICRAF) Head Quarters, United Nations Avenue, P.O. Box 30677, Nairobi (Kenya); Franken, Y.J. [FACT Foundation, Horsten 1, 5612 AX Eindhoven (Netherlands); Mathijs, E. [Katholieke Universiteit Leuven, Division Agricultural and Food Economics, Willem de Croylaan 42 Box 2424, BE-3001 Leuven (Belgium); Singh, V.P. [World Agroforestry Centre (ICRAF) Regional Office for South Asia, CG Block, 1st Floor, National Agricultural Science Centre, Dev Prakash Shastri Marg, Pusa, New Delhi 110 012 (India)

2008-12-15

The interest in using Jatropha curcas L. (JCL) as a feedstock for the production of bio-diesel is rapidly growing. The properties of the crop and its oil have persuaded investors, policy makers and clean development mechanism (CDM) project developers to consider JCL as a substitute for fossil fuels to reduce greenhouse gas emissions. However, JCL is still a wild plant of which basic agronomic properties are not thoroughly understood and the environmental effects have not been investigated yet. Gray literature reports are very optimistic on simultaneous wasteland reclamation capability and oil yields, further fueling the Jatropha bio-diesel hype. In this paper, we give an overview of the currently available information on the different process steps of the production process of bio-diesel from JCL, being cultivation and production of seeds, extraction of the oil, conversion to and the use of the bio-diesel and the by-products. Based on this collection of data and information the best available practice, the shortcomings and the potential environmental risks and benefits are discussed for each production step. The review concludes with a call for general precaution and for science to be applied. (author)

BioOil presents: Free-flowing alternative to traditional biomass energy generation

Energy Technology Data Exchange (ETDEWEB)

McChesney, S.

2003-12-01

A new technology, called fast pyrolysis, is described. Fast pyrolysis is a process for converting biomass collected from agricultural and forest residues into an organic liquid fuel, called BioOil, that's easily transported, stored and handled. BioOil's principal virtue is that it can be used to generate carbon-neutral, cost-effective process heat and electricity; it also disposes of organic waste, and creates new jobs and industries. As an indication of interest in BioOil, two recent developments are cited as worthy of note: an award of $23 million for biomass research jointly by the USDA and the USDOE and a commitment of $30 million by the Government of Canada to support the development and demonstration of bio-based systems and technologies. (The Canadian investment is part of the $1 billion commitment toward implementation of the Climate Change Program for Canada). The fast pyrolysis process is carbon dioxide neutral, i.e. when biomass is converted into thermal energy, the carbon dioxide that is released is equal to the amount of carbon dioxide that went into growing the biomass. The process is particularly appealing to energy companies in areas with large forestry or agricultural potential. In Canada, DynaMotive Energy Systems Corporation is the most advanced in developing and commercializing environmentally friendly fuels produced from biomass; the company is also a world leader in fast pyrolysis technology. Ontario Power Generation is cooperating with DynaMotive on a project to produce BioOil from residue supplied by Erie Flooring and Wood Products. The 2.5 megawatt gas turbine that will combust the bio-oil and generate electricity will be supplied by the Magellan Aerospace Corporation. Beyond meeting the energy requirements of Erie Flooring and Wood Products, the project will also contribute about 1.5 megawatts of power to OPG's green energy portfolio in 2004. It is expected that the example of a commercial project of this scale, will serve

Bio-films and processes of bio-corrosion and bio-deterioration in oil-and gas-processing industry

Energy Technology Data Exchange (ETDEWEB)

Kholodenko, V.P.; Irkhina, I.A.; Chugunov, V.A.; Rodin, V.B.; Zhigletsova, S.K.; Yermolenko, Z.M.; Rudavin, V.V. [State Research Center for Applied Microbiology, Obolensk, Moscow region (Russian Federation)

2004-07-01

As a rule, oil- and gas-processing equipment and pipelines are attacked by different microorganisms. Their vital ability determines processes of bio-deterioration and bio-corrosion that lead often to technological accidents and severe environmental contamination. Bio-films presenting a complex association of different microorganisms and their metabolites are responsible for most of damages. In this context, to study the role bio-films may play in processes of bio-damages and in efficacy of protective measures is important. We have developed method of culturing bio-films on the surface of metal coupons by using a natural microbial association isolated from oil-processing sites. Simple and informative methods of determining microbiological parameters of bio-films required to study bio-corrosion processes are also developed. In addition, a method of electron microscopic analysis of bio-films and pitting corrosion is offered. Using these methods, we conducted model experiments to determine the dynamics of corrosion processes depending on qualitative and quantitative composition of bio-films, aeration conditions and duration of the experiment. A harmful effect of soil bacteria and micro-mycetes on different pipeline coatings was also investigated. Experiments were conducted within 3-6 months and revealed degrading action of microorganisms. This was confirmed by axial tension testing of coatings. All these approaches will be used for further development of measures to protect gas- and oil-processing equipment and pipelines against bio-corrosion and bio-damages (first of all biocides). (authors)

Chem/bio sensing with non-classical light and integrated photonics.

Science.gov (United States)

Haas, J; Schwartz, M; Rengstl, U; Jetter, M; Michler, P; Mizaikoff, B

2018-01-29

Modern quantum technology currently experiences extensive advances in applicability in communications, cryptography, computing, metrology and lithography. Harnessing this technology platform for chem/bio sensing scenarios is an appealing opportunity enabling ultra-sensitive detection schemes. This is further facilliated by the progress in fabrication, miniaturization and integration of visible and infrared quantum photonics. Especially, the combination of efficient single-photon sources together with waveguiding/sensing structures, serving as active optical transducer, as well as advanced detector materials is promising integrated quantum photonic chem/bio sensors. Besides the intrinsic molecular selectivity and non-destructive character of visible and infrared light based sensing schemes, chem/bio sensors taking advantage of non-classical light sources promise sensitivities beyond the standard quantum limit. In the present review, recent achievements towards on-chip chem/bio quantum photonic sensing platforms based on N00N states are discussed along with appropriate recognition chemistries, facilitating the detection of relevant (bio)analytes at ultra-trace concentration levels. After evaluating recent developments in this field, a perspective for a potentially promising sensor testbed is discussed for reaching integrated quantum sensing with two fiber-coupled GaAs chips together with semiconductor quantum dots serving as single-photon sources.

Mild Biomass Liquefaction Process for Economic Production of Stabilized Refinery-Ready Bio-oil

Energy Technology Data Exchange (ETDEWEB)

Gangwal, Santosh [Southern Research, Durham, NC (United States); Meng, Jiajia [Southern Research, Durham, NC (United States); McCabe, Kevin [Southern Research, Durham, NC (United States); Larson, Eric [Princeton Univ., NJ (United States). Princeton Environmental Inst.; Mastro, Kelly [Southern Research, Durham, NC (United States)

2016-04-25

Southern Research (SR) in cooperation with U.S. Department of Energy (DOE), Bioenergy Technology Office (BETO), investigated a biomass liquefaction process for economic production of stabilized refinery-ready bio-oil. The project was awarded by DOE under a Funding Opportunity Announcement (DE-FOA-0000686) for Bio-oil Stabilization and Commoditization that intended to evaluate the feasibility of using bio-oil as a potential feedstock in an existing petroleum refinery. SR investigated Topic Area 1 of the FOA at Technology Readiness Level 2-3 to develop thermochemical liquefaction technologies for producing a bio-oil feedstock from high-impact biomass that can be utilized within a petroleum refinery. Bio-oil obtained from fast pyrolysis of biomass is a green intermediate that can be further upgraded into a biofuel for blending in a petroleum refinery using a hydro-deoxygenation (HDO) route. Co-processing pyrolysis bio-oil in a petroleum refinery is an attractive approach to leverage the refinery’s existing capital. However, the petroleum industry is reluctant to accept pyrolysis bio-oil because of a lack of a standard definition for an acceptable bio-oil feedstock in existing refinery processes. Also per BETO’s multiyear program plan, fast pyrolysis-based bio-fuel is presently not cost competitive with petroleum-based transportation fuels. SR aims to develop and demonstrate a cost-effective low-severity thermal liquefaction and hydrodeoxygenation (HDO) process to convert woody biomass to stabilized bio-oils that can be directly blended with hydrotreater input streams in a petroleum refinery for production of gasoline and/or diesel range hydrocarbons. The specific project objectives are to demonstrate the processes at laboratory scale, characterize the bio-oil product and develop a plan in partnership with a refinery company to move the technology towards commercialization.

BioSmalltalk: a pure object system and library for bioinformatics.

Science.gov (United States)

Morales, Hernán F; Giovambattista, Guillermo

2013-09-15

We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations. BioSmalltalk is cross-platform and freely available (MIT license) through the Google Project Hosting at http://code.google.com/p/biosmalltalk hernan.morales@gmail.com Supplementary data are available at Bioinformatics online.

Information Optics and Photonics Algorithms, Systems, and Applications

CERN Document Server

Javidi, Bahram

2010-01-01

This book addresses applications, recent advances, and emerging areas in fields with applications in information optics and photonics systems. The objective of this book is to illustrate and discuss novel approaches, analytical techniques, models, and technologies that enhance sensing, measurement, processing, interpretation, and visualization of information using free space optics and photonics. The material in this book concentrates on integration of diverse fields for cross-disciplinary applications including bio-photonics, digitally enhanced sensing and imaging systems, multi-dimensional optical imaging and image processing, bio-inspired imaging, 3D visualization, 3D displays, imaging on the nano-scale, quantum optics, super resolution imaging, photonics for biological applications, and holographic information systems. As a result, this book is a useful resource for researchers, engineers, and graduate students who work in the diverse fields comprising information optics and photonics.

Social Science Insights for the BioCCS Industry

Directory of Open Access Journals (Sweden)

Anne-Maree Dowd

2015-05-01

Full Text Available BioCCS is a technology gaining support as a possible emissions reduction policy option to address climate change. The process entails the capture, transport and storage of carbon dioxide produced during energy production from biomass. Globally, the most optimistic energy efficiency scenarios cannot avoid an average temperature increase of +2 °C without bioCCS. Although very much at the commencement stage, bioCCS demonstration projects can provide opportunity to garner knowledge, achieve consensus and build support around the technology’s properties. Yet many challenges face the bioCCS industry, including no guarantee biomass will always be from sustainable sources or potentially result in carbon stock losses. The operating environment also has no or limited policies, regulations and legal frameworks, and risk and safety concerns abound. Some state the key problem for bioCCS is cultural, lacking in a ‘community of support’, awareness and credibility amongst its own key stakeholders and the wider public. Therefore, the industry can benefit from the growing social science literature, drawing upon other energy and resource based industries with regard to social choice for future energy options. To this end, the following scoping review was conducted in order to ascertain gaps in existing public perception and acceptance research focusing on bioCCS.

Design considerations for a servo optical projection system

Science.gov (United States)

Nadalsky, Michael; Allen, Daniel; Bien, Joseph

1987-01-01

The present servooptical projection system (SOPS) furnishes 'out-the-window' scenery for a pilot-training flight simulator; attention is given to the parametric tradeoffs made in the SOPS' optical design, as well as to its mechanical packaging and the servonetwork performance of the unit as integrated into a research/training helicopter flight simulator. The final SOPS configuration is a function of scan head design, assembly modularity, image deterioration method, and focal lengths and relative apertures.

Bio-prospecting of distillery yeasts as bio-control and bio-remediation agents.

Science.gov (United States)

Ubeda, Juan F; Maldonado, María; Briones, Ana I; Francisco, J Fernández; González, Francisco J

2014-05-01

This work constitutes a preliminary study in which the capacity of non-Saccharomyces yeasts isolated from ancient distilleries as bio-control agents against moulds and in the treatment of waste waters contaminated by heavy metals-i.e. bio-remediation-is shown. In the first control assays, antagonist effect between non-Saccharomyces yeasts, their extracts and supernatants against some moulds, analysing the plausible (not exhaustive) involved factors were qualitatively verified. In addition, two enzymatic degrading properties of cell wall plant polymers, quitinolitic and pectinolitic, were screened. Finally, their use as agents of bio-remediation of three heavy metals (cadmium, chromium and lead) was analysed semi-quantitatively. The results showed that all isolates belonging to Pichia species effectively inhibited all moulds assayed. Moreover, P. kudriavzevii is a good candidate for both bio-control and bio-remediation because it inhibited moulds and accumulated the major proportion of the three tested metals.

Haematobia irritans dataset of raw sequence reads from Illumina and Pac Bio sequencing of genomic DNA

Science.gov (United States)

The genome of the horn fly, Haematobia irritans, was sequenced using Illumina- and Pac Bio-based protocols. Following quality filtering, the raw reads have been deposited at NCBI under the BioProject and BioSample accession numbers PRJNA30967 and SAMN07830356, respectively. The Illumina reads are un...

Subsurface Bio-Immobilization of Plutonium: Experiment and Model Validation Study

International Nuclear Information System (INIS)

Reed, Donald; Rittmann, Bruce

2006-01-01

The goal of this project is to conduct a concurrent experimental and modeling study centered on the interactions of Shewanella algae BrY with plutonium and uranium species and phases. The most important objective of this research is to investigate the long-term stability of bioprecipitated immobilized actinide phases under changing redox conditions in biologically active systems. The long-term stability of bio-immobilized actinides (e.g. by bio-reduction) is a key criteria that defines the utility and effectiveness of a remediation/containment strategy for subsurface actinide contaminants. Plutonium, which is the focus of this project, is the key contaminant of concern at several DOE sites

The BioPhotonics Workstation: from university research to commercial prototype

DEFF Research Database (Denmark)

Glückstad, Jesper

I will outline the specifications of the compact BioPhotonics Workstation we recently have developed that utilizes high-speed spatial light modulation to generate an array of reconfigurable laser-traps making 3D real-time optical manipulation of advanced structures possible with the use of joysti...

Optical bio-sensors in microfluidic chips

NARCIS (Netherlands)

Pollnau, Markus; Dongre, C.; Pham Van So, P.V.S.; Bernhardi, Edward; Worhoff, Kerstin; de Ridder, R.M.; Hoekstra, Hugo

2012-01-01

Direct femtosecond laser writing is used to integrate optical waveguides that intersect the microfluidic channels in a commercial optofluidic chip. With laser excitation, fluorescently labeled DNA molecules of different sizes are separated by capillary electrophoresis with high operating speed and

Study of chemically synthesized ZnO nano particles under a bio template using radioactive ion beam

CERN Multimedia

This is a project proposal to study nano sized semiconductor ZnO system, useful in biology and medicinal purposes, using radioactive ion beam from ISOLDE. Doping of the nano particles with Cu, Cd and Ga ions (in their variable valancy states) are expected to impart changes in the electrical structure and properties in the said system under study. The morphological changes, chemical environment, micro structure, electrical and optical properties of the nano size particles of ZnO system (developed under a bio template of folic acid) after the interaction with radioactive ion beam will be studied. The provision of perturbed angular correlation (PAC) study with respect to the changes in chemical environment, where ever possible will be attempted.

Description of Ethical Bio-Technology Assessment Tools for Agriculture and Food Production. Interim Report Ethical Bio-TA Tools

NARCIS (Netherlands)

Beekman, V.

2004-01-01

The objective of 'Ethical Bio-TA Tools' project is to develop and improve tools for the ethical assessment of new technologies in agriculture and food production in general and modern biotechnologies in particular. The developed tools need to be designed for various purposes and contexts. They

3-D optical profilometry at micron scale with multi-frequency fringe projection using modified fibre optic Lloyd's mirror technique

Science.gov (United States)

Inanç, Arda; Kösoğlu, Gülşen; Yüksel, Heba; Naci Inci, Mehmet

2018-06-01

A new fibre optic Lloyd's mirror method is developed for extracting 3-D height distribution of various objects at the micron scale with a resolution of 4 μm. The fibre optic assembly is elegantly integrated to an optical microscope and a CCD camera. It is demonstrated that the proposed technique is quite suitable and practical to produce an interference pattern with an adjustable frequency. By increasing the distance between the fibre and the mirror with a micrometre stage in the Lloyd's mirror assembly, the separation between the two bright fringes is lowered down to the micron scale without using any additional elements as part of the optical projection unit. A fibre optic cable, whose polymer jacket is partially stripped, and a microfluidic channel are used as test objects to extract their surface topographies. Point by point sensitivity of the method is found to be around 8 μm, changing a couple of microns depending on the fringe frequency and the measured height. A straightforward calibration procedure for the phase to height conversion is also introduced by making use of the vertical moving stage of the optical microscope. The phase analysis of the acquired image is carried out by One Dimensional Continuous Wavelet Transform for which the chosen wavelet is the Morlet wavelet and the carrier removal of the projected fringe patterns is achieved by reference subtraction. Furthermore, flexible multi-frequency property of the proposed method allows measuring discontinuous heights where there are phase ambiguities like 2π by lowering the fringe frequency and eliminating the phase ambiguity.

Aberration measurement of projection optics in lithographic tools based on two-beam interference theory

International Nuclear Information System (INIS)

Ma Mingying; Wang Xiangzhao; Wang Fan

2006-01-01

The degradation of image quality caused by aberrations of projection optics in lithographic tools is a serious problem in optical lithography. We propose what we believe to be a novel technique for measuring aberrations of projection optics based on two-beam interference theory. By utilizing the partial coherent imaging theory, a novel model that accurately characterizes the relative image displacement of a fine grating pattern to a large pattern induced by aberrations is derived. Both even and odd aberrations are extracted independently from the relative image displacements of the printed patterns by two-beam interference imaging of the zeroth and positive first orders. The simulation results show that by using this technique we can measure the aberrations present in the lithographic tool with higher accuracy

Aberration measurement of projection optics in lithographic tools based on two-beam interference theory.

Science.gov (United States)

Ma, Mingying; Wang, Xiangzhao; Wang, Fan

2006-11-10

The degradation of image quality caused by aberrations of projection optics in lithographic tools is a serious problem in optical lithography. We propose what we believe to be a novel technique for measuring aberrations of projection optics based on two-beam interference theory. By utilizing the partial coherent imaging theory, a novel model that accurately characterizes the relative image displacement of a fine grating pattern to a large pattern induced by aberrations is derived. Both even and odd aberrations are extracted independently from the relative image displacements of the printed patterns by two-beam interference imaging of the zeroth and positive first orders. The simulation results show that by using this technique we can measure the aberrations present in the lithographic tool with higher accuracy.

Performance of operational satellite bio-optical algorithms in different water types in the southeastern Arabian Sea

Directory of Open Access Journals (Sweden)

P. Minu

2016-10-01

Full Text Available The in situ remote sensing reflectance (Rrs and optically active substances (OAS measured using hyperspectral radiometer, were used for optical classification of coastal waters in the southeastern Arabian Sea. The spectral Rrs showed three distinct water types, that were associated with the variability in OAS such as chlorophyll-a (chl-a, chromophoric dissolved organic matter (CDOM and volume scattering function at 650 nm (β650. The water types were classified as Type-I, Type-II and Type-III respectively for the three Rrs spectra. The Type-I waters showed the peak Rrs in the blue band (470 nm, whereas in the case of Type-II and III waters the peak Rrs was at 560 and 570 nm respectively. The shifting of the peak Rrs at the longer wavelength was due to an increase in concentration of OAS. Further, we evaluated six bio-optical algorithms (OC3C, OC4O, OC4, OC4E, OC3M and OC4O2 used operationally to retrieve chl-a from Coastal Zone Colour Scanner (CZCS, Ocean Colour Temperature Scanner (OCTS, Sea-viewing Wide Field-of-view Sensor (SeaWiFS, MEdium Resolution Imaging Spectrometer (MERIS, Moderate Resolution Imaging Spectroradiometer (MODIS and Ocean Colour Monitor (OCM2. For chl-a concentration greater than 1.0 mg m−3, algorithms based on the reference band ratios 488/510/520 nm to 547/550/555/560/565 nm have to be considered. The assessment of algorithms showed better performance of OC3M and OC4. All the algorithms exhibited better performance in Type-I waters. However, the performance was poor in Type-II and Type-III waters which could be attributed to the significant co-variance of chl-a with CDOM.

Functional mesoporous silica nanoparticles for bio-imaging applications.

Science.gov (United States)

Cha, Bong Geun; Kim, Jaeyun

2018-03-22

Biomedical investigations using mesoporous silica nanoparticles (MSNs) have received significant attention because of their unique properties including controllable mesoporous structure, high specific surface area, large pore volume, and tunable particle size. These unique features make MSNs suitable for simultaneous diagnosis and therapy with unique advantages to encapsulate and load a variety of therapeutic agents, deliver these agents to the desired location, and release the drugs in a controlled manner. Among various clinical areas, nanomaterials-based bio-imaging techniques have advanced rapidly with the development of diverse functional nanoparticles. Due to the unique features of MSNs, an imaging agent supported by MSNs can be a promising system for developing targeted bio-imaging contrast agents with high structural stability and enhanced functionality that enable imaging of various modalities. Here, we review the recent achievements on the development of functional MSNs for bio-imaging applications, including optical imaging, magnetic resonance imaging (MRI), positron emission tomography (PET), computed tomography (CT), ultrasound imaging, and multimodal imaging for early diagnosis. With further improvement in noninvasive bio-imaging techniques, the MSN-supported imaging agent systems are expected to contribute to clinical applications in the future. This article is categorized under: Diagnostic Tools > In vivo Nanodiagnostics and Imaging Nanotechnology Approaches to Biology > Nanoscale Systems in Biology. © 2018 Wiley Periodicals, Inc.

Bio-fuels

International Nuclear Information System (INIS)

2008-01-01

This report presents an overview of the technologies which are currently used or presently developed for the production of bio-fuels in Europe and more particularly in France. After a brief history of this production since the beginning of the 20. century, the authors describe the support to agriculture and the influence of the Common Agricultural Policy, outline the influence of the present context of struggle against the greenhouse effect, and present the European legislative context. Data on the bio-fuels consumption in the European Union in 2006 are discussed. An overview of the evolution of the activity related to bio-fuels in France, indicating the locations of ethanol and bio-diesel production facilities, and the evolution of bio-fuel consumption, is given. The German situation is briefly presented. Production of ethanol by fermentation, the manufacturing of ETBE, the bio-diesel production from vegetable oils are discussed. Second generation bio-fuels are then presented (cellulose enzymatic processing), together with studies on thermochemical processes and available biomass resources

Approach for determining the contributions of phytoplankton, colored organic material, and nonalgal particles to the total spectral absorption in marine waters.

Science.gov (United States)

Lin, Junfang; Cao, Wenxi; Wang, Guifeng; Hu, Shuibo

2013-06-20

Using a data set of 1333 samples, we assess the spectral absorption relationships of different wave bands for phytoplankton (ph) and particles. We find that a nonlinear model (second-order quadratic equations) delivers good performance in describing their spectral characteristics. Based on these spectral relationships, we develop a method for partitioning the total absorption coefficient into the contributions attributable to phytoplankton [a(ph)(λ)], colored dissolved organic material [CDOM; a(CDOM)(λ)], and nonalgal particles [NAP; a(NAP)(λ)]. This method is validated using a data set that contains 550 simultaneous measurements of phytoplankton, CDOM, and NAP from the NASA bio-Optical Marine Algorithm Dataset. We find that our method is highly efficient and robust, with significant accuracy: the relative root-mean-square errors (RMSEs) are 25.96%, 38.30%, and 19.96% for a(ph)(443), a(CDOM)(443), and the CDOM exponential slope, respectively. The performance is still satisfactory when the method is applied to water samples from the northern South China Sea as a regional case. The computed and measured absorption coefficients (167 samples) agree well with the RMSEs, i.e., 18.50%, 32.82%, and 10.21% for a(ph)(443), a(CDOM)(443), and the CDOM exponential slope, respectively. Finally, the partitioning method is applied directly to an independent data set (1160 samples) derived from the Bermuda Bio-Optics Project that contains relatively low absorption values, and we also obtain good inversion accuracy [RMSEs of 32.37%, 32.57%, and 11.52% for a(ph)(443), a(CDOM)(443), and the CDOM exponential slope, respectively]. Our results indicate that this partitioning method delivers satisfactory performance for the retrieval of a(ph), a(CDOM), and a(NAP). Therefore, this may be a useful tool for extracting absorption coefficients from in situ measurements or remotely sensed ocean-color data.

Complex biological and bio-inspired systems

Energy Technology Data Exchange (ETDEWEB)

Ecke, Robert E [Los Alamos National Laboratory

2009-01-01

The understanding and characterization ofthe fundamental processes of the function of biological systems underpins many of the important challenges facing American society, from the pathology of infectious disease and the efficacy ofvaccines, to the development of materials that mimic biological functionality and deliver exceptional and novel structural and dynamic properties. These problems are fundamentally complex, involving many interacting components and poorly understood bio-chemical kinetics. We use the basic science of statistical physics, kinetic theory, cellular bio-chemistry, soft-matter physics, and information science to develop cell level models and explore the use ofbiomimetic materials. This project seeks to determine how cell level processes, such as response to mechanical stresses, chemical constituents and related gradients, and other cell signaling mechanisms, integrate and combine to create a functioning organism. The research focuses on the basic physical processes that take place at different levels ofthe biological organism: the basic role of molecular and chemical interactions are investigated, the dynamics of the DNA-molecule and its phylogenetic role are examined and the regulatory networks of complex biochemical processes are modeled. These efforts may lead to early warning algorithms ofpathogen outbreaks, new bio-sensors to detect hazards from pathomic viruses to chemical contaminants. Other potential applications include the development of efficient bio-fuel alternative-energy processes and the exploration ofnovel materials for energy usages. Finally, we use the notion of 'coarse-graining,' which is a method for averaging over less important degrees of freedom to develop computational models to predict cell function and systems-level response to disease, chemical stress, or biological pathomic agents. This project supports Energy Security, Threat Reduction, and the missions of the DOE Office of Science through its efforts to

Neutralization of Aerosolized Bio-Agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation Mechanisms

Science.gov (United States)

2016-06-01

Bio -agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation Mechanisms Distribution Statement A. Approved for public...of Cincinnati Project Title: Neutralization of Aerosolized Bio -agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation...fire ball, where they will not effectively interact with any viable bio -aerosol. 1.1.4. Conclusions Cryo-milling is necessary to achieve a

McCullough to Liberty fiber optics project

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-05-01

The US Department of Energy, Western Area Power Administration (Western) proposes to replace an existing overhead static wire with a shield wire that contains optical fibers (OPGW) on transmission lines from McCullough Substation, south of Las Vegas, Nevada, to Liberty Substation near Phoenix, Arizona. The replacement will occur on the McCullough-Davis, Davis-Parker No. 2, and Parker-Liberty No. 1 230-kV transmission lines. Western is responsible for the operation and maintenance of the lines. Western prepared an Environmental Assessment (EA) entitled ``McCullough to Liberty Fiber Optics Project`` (DOE/EA-1202). The EA contains the analysis of the proposed construction, operation, and maintenance of the OPGW. Based on the analysis in the EA, Western finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. The preparation of an environmental impact statement (EIS) is not required, and therefore, Western is issuing this Findings of No Significant Impact (FONSI).

McCullough to Liberty fiber optics project

International Nuclear Information System (INIS)

1997-05-01

The US Department of Energy, Western Area Power Administration (Western) proposes to replace an existing overhead static wire with a shield wire that contains optical fibers (OPGW) on transmission lines from McCullough Substation, south of Las Vegas, Nevada, to Liberty Substation near Phoenix, Arizona. The replacement will occur on the McCullough-Davis, Davis-Parker No. 2, and Parker-Liberty No. 1 230-kV transmission lines. Western is responsible for the operation and maintenance of the lines. Western prepared an Environmental Assessment (EA) entitled ''McCullough to Liberty Fiber Optics Project'' (DOE/EA-1202). The EA contains the analysis of the proposed construction, operation, and maintenance of the OPGW. Based on the analysis in the EA, Western finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. The preparation of an environmental impact statement (EIS) is not required, and therefore, Western is issuing this Findings of No Significant Impact (FONSI)

Combining Bio-inspired Sensing with Bio-inspired Locomotion

DEFF Research Database (Denmark)

Shaikh, Danish; Hallam, John; Christensen-Dalsgaard, Jakob

In this paper we present a preliminary Braitenberg vehicle–like approach to combine bio-inspired audition with bio-inspired quadruped locomotion in simulation. Locomotion gaits of the salamander–like robot Salamandra robotica are modified by a lizard’s peripheral auditory system model that modula......In this paper we present a preliminary Braitenberg vehicle–like approach to combine bio-inspired audition with bio-inspired quadruped locomotion in simulation. Locomotion gaits of the salamander–like robot Salamandra robotica are modified by a lizard’s peripheral auditory system model...

Selective individual primary cell capture using locally bio-functionalized micropores.

Directory of Open Access Journals (Sweden)

Jie Liu

Full Text Available BACKGROUND: Solid-state micropores have been widely employed for 6 decades to recognize and size flowing unlabeled cells. However, the resistive-pulse technique presents limitations when the cells to be differentiated have overlapping dimension ranges such as B and T lymphocytes. An alternative approach would be to specifically capture cells by solid-state micropores. Here, the inner wall of 15-µm pores made in 10 µm-thick silicon membranes was covered with antibodies specific to cell surface proteins of B or T lymphocytes. The selective trapping of individual unlabeled cells in a bio-functionalized micropore makes them recognizable just using optical microscopy. METHODOLOGY/PRINCIPAL FINDINGS: We locally deposited oligodeoxynucleotide (ODN and ODN-conjugated antibody probes on the inner wall of the micropores by forming thin films of polypyrrole-ODN copolymers using contactless electro-functionalization. The trapping capabilities of the bio-functionalized micropores were validated using optical microscopy and the resistive-pulse technique by selectively capturing polystyrene microbeads coated with complementary ODN. B or T lymphocytes from a mouse splenocyte suspension were specifically immobilized on micropore walls functionalized with complementary ODN-conjugated antibodies targeting cell surface proteins. CONCLUSIONS/SIGNIFICANCE: The results showed that locally bio-functionalized micropores can isolate target cells from a suspension during their translocation throughout the pore, including among cells of similar dimensions in complex mixtures.

Selective Individual Primary Cell Capture Using Locally Bio-Functionalized Micropores

Science.gov (United States)

Liu, Jie; Bombera, Radoslaw; Leroy, Loïc; Roupioz, Yoann; Baganizi, Dieudonné R.; Marche, Patrice N.; Haguet, Vincent; Mailley, Pascal; Livache, Thierry

2013-01-01

Background Solid-state micropores have been widely employed for 6 decades to recognize and size flowing unlabeled cells. However, the resistive-pulse technique presents limitations when the cells to be differentiated have overlapping dimension ranges such as B and T lymphocytes. An alternative approach would be to specifically capture cells by solid-state micropores. Here, the inner wall of 15-µm pores made in 10 µm-thick silicon membranes was covered with antibodies specific to cell surface proteins of B or T lymphocytes. The selective trapping of individual unlabeled cells in a bio-functionalized micropore makes them recognizable just using optical microscopy. Methodology/Principal Findings We locally deposited oligodeoxynucleotide (ODN) and ODN-conjugated antibody probes on the inner wall of the micropores by forming thin films of polypyrrole-ODN copolymers using contactless electro-functionalization. The trapping capabilities of the bio-functionalized micropores were validated using optical microscopy and the resistive-pulse technique by selectively capturing polystyrene microbeads coated with complementary ODN. B or T lymphocytes from a mouse splenocyte suspension were specifically immobilized on micropore walls functionalized with complementary ODN-conjugated antibodies targeting cell surface proteins. Conclusions/Significance The results showed that locally bio-functionalized micropores can isolate target cells from a suspension during their translocation throughout the pore, including among cells of similar dimensions in complex mixtures. PMID:23469221

Optical switches based on surface plasmons

International Nuclear Information System (INIS)

Chen Cong; Wang Pei; Yuan Guanghui; Wang Xiaolei; Min Changjun; Deng Yan; Lu Yonghua; Ming Hai

2008-01-01

Great attention is being paid to surface plasmons (SPs) because of their potential applications in sensors, data storage and bio-photonics. Recently, more and more optical switches based on surface plasmon effects have been demonstrated either by simulation or experimentally. This article describes the principles, advantages and disadvantages of various types of optical switches based on SPs, in particular the all-optical switches. (authors)

Bio-compatibility, surface and chemical characterization of glow discharge plasma modified ZnO nanocomposite polycarbonate

Energy Technology Data Exchange (ETDEWEB)

Bagra, Bhawna, E-mail: bhawnacct@gmail.com; Pimpliskar, Prashant, E-mail: bhawnacct@gmail.com [Centre for Converging Technologies, University of Rajasthan, Jaipur-302004 (India); Agrawal, Narendra Kumar [Department of Physics, Malaviya National Institute of Technology, Jaipur-302004 (India)

2014-04-24

Bio compatibility is an important issue for synthesis of biomedical devices, which can be tested by bioadoptability and creations of active site to enhance the bacterial/cell growth in biomedical devices. Hence a systematic study was carried out to characterize the effects of Nitrogen ion plasma for creations of active site in nano composite polymer membrane. Nano particles of ZnO are synthesized by chemical root, using solution casting nano composite polymeric membranes were prepared and treated with Nitrogen ion plasma. These membranes were characterized by different technique such as optical microscopy, SEM- Scanning electron microscope, optical transmittance, Fourier transform infrared spectroscopy. Then biocompatibility for membranes was tested by testing of bio-adoptability of membrane.

Material requirements for bio-inspired sensing systems

Science.gov (United States)

Biggins, Peter; Lloyd, Peter; Salmond, David; Kusterbeck, Anne

2008-10-01

The aim of developing bio-inspired sensing systems is to try and emulate the amazing sensitivity and specificity observed in the natural world. These capabilities have evolved, often for specific tasks, which provide the organism with an advantage in its fight to survive and prosper. Capabilities cover a wide range of sensing functions including vision, temperature, hearing, touch, taste and smell. For some functions, the capabilities of natural systems are still greater than that achieved by traditional engineering solutions; a good example being a dog's sense of smell. Furthermore, attempting to emulate aspects of biological optics, processing and guidance may lead to more simple and effective devices. A bio-inspired sensing system is much more than the sensory mechanism. A system will need to collect samples, especially if pathogens or chemicals are of interest. Other functions could include the provision of power, surfaces and receptors, structure, locomotion and control. In fact it is possible to conceive of a complete bio-inspired system concept which is likely to be radically different from more conventional approaches. This concept will be described and individual component technologies considered.

Capital effectiveness in a capital intensive project

Energy Technology Data Exchange (ETDEWEB)

Yarossi, M.E. (IPA Institute, The Hague (Netherlands))

2009-07-01

The technical difficulty of incorporating new technology in capital intensive projects has been underestimated. Bio-refineries projects are no exemption. These projects in many occasions have assigned inadequate project resources, such as lean project teams and overly optimistic contingencies. Furthermore, project developers have set unrealistic expectations; for example: aggressive schedule duration, low cost targets and optimistic operability targets. These project drivers set before project's authorization compromise the project's outcome. In many cases, this translates into lower return on investment, higher costs, and lower operability. In order to counteract these outcomes, it is critical for capital intensive projects, like bio-refineries, to have a well define project which will enable to increase its chance of success. IPA's research has shown that bio-refineries projects have poor project performance due to poor project practices, lack of owner project controls and inadequate change management. An adequate risk analysis during definition is a critical component of a project's success, especially when there is new technology, like biomass conversion. It is of outmost importance to asses this technology and set realistic expectations. parallel to this, there is a need to have a well established execution strategy, which should be maintained throughout the execution of the project. In conclusion, IPA's research has indicated that bio-refineries, as any other capital intensive project, need to assign adequate resources at an early state of project development, by making sure there is and adequate team in place, reasonable schedule, technical difficulties evaluation, and keeping control during execution. Although these elements might be seen as common practices that should be taken into account when developing a project, many projects being their execution without having a proper foundation, and thus affecting the project

Bio-fuel barometer

International Nuclear Information System (INIS)

2015-01-01

After a year of doubt and decline the consumption of bio-fuel resumed a growth in 2014 in Europe: +6.1% compared to 2013, to reach 14 millions tep (Mtep) that is just below the 2012 peak. This increase was mainly due to bio-diesel. By taking into account the energy content and not the volume, the consumption of bio-diesel represented 79.7% of bio-fuel consumption in 2014, that of bio-ethanol only 19.1% and that of biogas 1%. The incorporating rate of bio-fuels in fuels used for transport were 4.6% in 2013 and 4.9% in 2014. The trend is good and the future of bio-fuel seems clearer as the European Union has set a not-so-bad limit of 7% for first generation bio-fuels in order to take into account the CASI effect. The CASI effect shows that an increase of the consumption of first generation bio-fuels (it means bio-fuels produced from food crops like rape, soy, cereals, sugar beet,...) implies in fact a global increase in greenhouse gas release that is due to a compensation phenomenon. More uncultivated lands (like forests, grasslands, bogs are turned into cultivated lands in order to compensate lands used for bio-fuel production. In most European countries the consumption of bio-diesel increased in 2014 while it was a bad year for the European industry of ethanol because ethanol prices dropped by 16 %. Oil companies are now among the most important producers of bio-diesel in Europe.

Bio-remediation of a sludge containing hydrocarbons

International Nuclear Information System (INIS)

Ayotamuno, M.J.; Okparanma, R.N.; Nweneka, E.K.; Ogaji, S.O.T.; Probert, S.D.

2007-01-01

Bio-augmentation has been used as a bio-remediation option for hydrocarbon-contaminated, oily-sludge restoration. This sludge was obtained from the Bonny-Terminal Improvement Project (BTIP) for Bonny Island, near Port Harcourt, Nigeria. Its total hydrocarbon-content (THC) was 69,372 mg/kg of sludge. Three treatment reactors (X, Y and Z) and one control reactor (A) were charged with 1500 g of oily sludge and 250 g of agricultural soil (i.e. an oily sludge to soil ratio of 6:1), the mixture homogenized and allowed to settle for seven days before various CFUs were added to reactors X, Y and Z. Reactor A did not receive any bio-preparation. The agricultural soil served both as a nutrient and a microbe carrier. With regularly scheduled mixing and watering, the THC reduction in the oily sludge varied between 40.7% and 53.2% within two weeks as well as between 63.7% and 84.5% within six weeks of applying the bio-remediation. The CFU counts of the added bio-preparation varied between 1.2 x 12 12 and 3.0 x 10 12 CFU/g of sludge and decreased to 7.0 x 10 11 CFU/g of sludge by the end of the sixth week. The pH of the degrading sludge fluctuated between 6.5 and 7.8 during the same period. When compared with the performance of the indigenous microbes in the control sample, the added bio-preparation evidently increased the THC reduction rate in the oily sludge

BioJS: an open source JavaScript framework for biological data visualization.

Science.gov (United States)

Gómez, John; García, Leyla J; Salazar, Gustavo A; Villaveces, Jose; Gore, Swanand; García, Alexander; Martín, Maria J; Launay, Guillaume; Alcántara, Rafael; Del-Toro, Noemi; Dumousseau, Marine; Orchard, Sandra; Velankar, Sameer; Hermjakob, Henning; Zong, Chenggong; Ping, Peipei; Corpas, Manuel; Jiménez, Rafael C

2013-04-15

BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community. http://code.google.com/p/biojs/. Supplementary data are available at Bioinformatics online.

BioSPICE: access to the most current computational tools for biologists.

Science.gov (United States)

Garvey, Thomas D; Lincoln, Patrick; Pedersen, Charles John; Martin, David; Johnson, Mark

2003-01-01

The goal of the BioSPICE program is to create a framework that provides biologists access to the most current computational tools. At the program midpoint, the BioSPICE member community has produced a software system that comprises contributions from approximately 20 participating laboratories integrated under the BioSPICE Dashboard and a methodology for continued software integration. These contributed software modules are the BioSPICE Dashboard, a graphical environment that combines Open Agent Architecture and NetBeans software technologies in a coherent, biologist-friendly user interface. The current Dashboard permits data sources, models, simulation engines, and output displays provided by different investigators and running on different machines to work together across a distributed, heterogeneous network. Among several other features, the Dashboard enables users to create graphical workflows by configuring and connecting available BioSPICE components. Anticipated future enhancements to BioSPICE include a notebook capability that will permit researchers to browse and compile data to support model building, a biological model repository, and tools to support the development, control, and data reduction of wet-lab experiments. In addition to the BioSPICE software products, a project website supports information exchange and community building.

BioCreative Workshops for DOE Genome Sciences: Text Mining for Metagenomics

Energy Technology Data Exchange (ETDEWEB)

Wu, Cathy H. [Univ. of Delaware, Newark, DE (United States). Center for Bioinformatics and Computational Biology; Hirschman, Lynette [The MITRE Corporation, Bedford, MA (United States)

2016-10-29

The objective of this project was to host BioCreative workshops to define and develop text mining tasks to meet the needs of the Genome Sciences community, focusing on metadata information extraction in metagenomics. Following the successful introduction of metagenomics at the BioCreative IV workshop, members of the metagenomics community and BioCreative communities continued discussion to identify candidate topics for a BioCreative metagenomics track for BioCreative V. Of particular interest was the capture of environmental and isolation source information from text. The outcome was to form a “community of interest” around work on the interactive EXTRACT system, which supported interactive tagging of environmental and species data. This experiment is included in the BioCreative V virtual issue of Database. In addition, there was broad participation by members of the metagenomics community in the panels held at BioCreative V, leading to valuable exchanges between the text mining developers and members of the metagenomics research community. These exchanges are reflected in a number of the overview and perspective pieces also being captured in the BioCreative V virtual issue. Overall, this conversation has exposed the metagenomics researchers to the possibilities of text mining, and educated the text mining developers to the specific needs of the metagenomics community.

The utility of three-dimensional optical projection tomography in nerve injection injury imaging

Czech Academy of Sciences Publication Activity Database

Cvetko, E.; Čapek, Martin; Damjanovska, M.; Reina, M. A.; Eržen, I.; Stopar-Pintarič, T.

2015-01-01

Roč. 70, č. 8 (2015), s. 939-947 ISSN 0003-2409 R&D Projects: GA ČR(CZ) GA13-12412S; GA MŠk(CZ) LH13028 Institutional support: RVO:67985823 Keywords : optical projection tomography * 3D nerve visualization * nerve disruption Subject RIV: EA - Cell Biology Impact factor: 3.794, year: 2015

Agricultural Bio-Fueled Generation of Electricity and Development of Durable and Efficent NOx Reduction

Energy Technology Data Exchange (ETDEWEB)

Boyd, Rodney

2007-08-08

The objective of this project was to define the scope and cost of a technology research and development program that will demonstrate the feasibility of using an off-the-shelf, unmodified, large bore diesel powered generator in a grid-connected application, utilizing various blends of BioDiesel as fuel. Furthermore, the objective of project was to develop an emissions control device that uses a catalytic process and BioDiesel (without the presence of Ammonia or Urea)to reduce NOx and other pollutants present in a reciprocating engine exhaust stream with the goal of redefining the highest emission reduction efficiencies possible for a diesel reciprocating generator. Process: Caterpillar Power Generation adapted an off-the-shelf Diesel Generator to run on BioDiesel and various Petroleum Diesel/BioDiesel blends. EmeraChem developed and installed an exhaust gas cleanup system to reduce NOx, SOx, volatile organics, and particulates. The system design and function was optimized for emissions reduction with results in the 90-95% range;

Bio-analytical applications of mid-infrared spectroscopy using silver halide fiber-optic probes

International Nuclear Information System (INIS)

Heise, H.M.; Kuepper, L.; Butvina, L.N.

2002-01-01

Infrared-spectroscopy has proved to be a powerful method for the study of various biomedical samples, in particular for in-vitro analysis in the clinical laboratory and for non-invasive diagnostics. In general, the analysis of biofluids such as whole blood, urine, microdialysates and bioreactor broth media takes advantage of the fact that a multitude of analytes can be quantified simultaneously and rapidly without the need for reagents. Progress in the quality of infrared silver halide fibers enabled us to construct several flexible fiber-optic probes of different geometries, which are particularly suitable for the measurement of small biosamples. Recent trends show that dry film measurements by mid-infrared spectroscopy could revolutionize analytical tools in the clinical chemistry laboratory, and an example is given. Infrared diagnostic tools show a promising potential for patients, and minimal-invasive blood glucose assays or skin tissue pathology in particular cannot be left out using mid-infrared fiber-based probes. Other applications include the measurement of skin samples including penetration studies of vitamins and constituents of cosmetic cream formulations. A further field is the micro-domain analysis of biopsy samples from bog mummified corpses, and recent results on the chemistry of dermis and hair samples are reported. Another field of application, for which results are reported, is food analysis and bio-reactor monitoring

Making perfect life : bio-engineering (in) the 21st century : interim study

NARCIS (Netherlands)

Est, van R.; Keulen, van I.; Geesink, I.; Schuiff, M.

2010-01-01

Reportnumber: PE 438.829; This document is the result of the preparatory phase of the STOA-project "Making perfect life", that defined the project focus. This resulted in the study document Making Perfect Life: Bio-engineering (in) the 21st century. A project plan for the next two phases was

Bio-functional subwavelength optical waveguides for biodetection

Energy Technology Data Exchange (ETDEWEB)

Sirbuly, D J; Fischer, N; Huang, S; Artyukhin, A

2007-07-10

We report a versatile biofunctional subwavelength photonic device platform for real-time detection of biological molecules. Our devices contain lipid bilayer membranes fused onto metal oxide nanowire waveguides stretched across polymeric flow channels. The lipid bilayers incorporating target receptors are submersed in the propagating evanescent field of the optical cavity. We show that the lipid bilayers in our devices are continuous, have very high mobile fraction, and are resistant to fouling. We also demonstrate that our platform allows rapid membrane exchange. Finally we use this device for detection of specific DNA sequences in solution by anchoring complementary DNA target strands in the lipid bilayer. This evanescent wave sensing architecture holds great potential for portable, all-optical detection systems.

Establishment of a cervical cancer bio-bank for the Chinese population: from project-based sample collection to routine management.

Science.gov (United States)

Yang, Ru; Li, Xiong; Zhou, Hang; Jia, Yao; Zhou, Jin; Huang, Kecheng; Tang, Fangxu; Hu, Ting; Shen, Jian; Chen, Zhilan; Wang, Shaoshuai; Sun, Haiying; Guo, Lili; Wang, Lin; Wang, Hui; Ma, Ding; Li, Shuang

2015-08-01

There is an increasing need for the establishment of a cervical cancer bio-bank that will facilitate both clinical and basic research. The cervical cancer bio-bank was first established in January 1999 and included two stages. First, a GWAS-based sample collection was conducted with special emphasis on the diagnosis and the retrieval of the corresponding bio-specimens, especially blood samples. Second, clinical data and their corresponding bio-specimens were routinely collected and handled. Notably, these bio-specimens also included samples from Wufeng Tujia Autonomous County, which has the highest incidence of cervical cancer in China. The specimens were collected from patients with cervical cancer and those with cervical intraepithelial neoplasia, while the control samples were collected from normal individuals. With special emphasis on clinical data and blood samples for the GWAS analysis, the collection of other bio-specimens was slow, and the pairing of specimens and clinical data was poor during the first stage. However, in the second stage, the pairing of the clinical data and its corresponding bio-specimens improved. At present, the samples procured and preserved in the bio-bank cover most regions of China and different ethnic groups for both the normal controls and cervical cancer patients of different pathological categories. This bio-bank of cervical cancer specimens from the Chinese population will greatly promote the studies of cervical cancer in China.

Functionalized 2PP structures for the BioPhotonics Workstation

DEFF Research Database (Denmark)

Matsuoka, Tomoyo; Nishi, Masayuki; Sakakura, Masaaki

2011-01-01

In its standard version, our BioPhotonics Workstation (BWS) can generate multiple controllable counter-propagating beams to create real-time user-programmable optical traps for stable three-dimensional control and manipulation of a plurality of particles. The combination of the platform with micr...... on the BWS platform by functionalizing them with silica-based sol-gel materials inside which dyes can be entrapped....

Israel Marine Bio-geographic Database (ISRAMAR-BIO)

Science.gov (United States)

Greengrass, Eyal; Krivenko, Yevgeniya; Ozer, Tal; Ben Yosef, Dafna; Tom, Moshe; Gertman, Isaac

2015-04-01

The knowledge of the space/time variations of species is the basis for any ecological investigations. While historical observations containing integral concentrations of biological parameters (chlorophyll, abundance, biomass…) are organized partly in ISRAMAR Cast Database, the taxon-specific data collected in Israel has not been sufficiently organized. This has been hindered by the lack of standards, variability of methods and complexity of biological data formalization. The ISRAMAR-BIO DB was developed to store various types of historical and future available information related to marine species observations and related metadata. Currently the DB allows to store biological data acquired by the following sampling devices such as: van veer grab, box corer, sampling bottles, nets (plankton, trawls and fish), quadrates, and cameras. The DB's logical unit is information regarding a specimen (taxa name, barcode, image), related attributes (abundance, size, age, contaminants…), habitat description, sampling device and method, time and space of sampling, responsible organization and scientist, source of information (cruise, project and publication). The following standardization of specimen and attributes naming were implemented: Taxonomy according to World Register of Marine Species (WoRMS: http://www.marinespecies.org). Habitat description according to Coastal and Marine Ecological Classification Standards (CMECS: http://www.cmecscatalog.org) Parameter name; Unit; Device name; Developmental stage; Institution name; Country name; Marine region according to SeaDataNet Vocabularies (http://www.seadatanet.org/Standards-Software/Common-Vocabularies). This system supports two types of data submission procedures, which support the above stated data structure. The first is a downloadable excel file with drop-down fields based on the ISRAMAR-BIO vocabularies. The file is filled and uploaded online by the data contributor. Alternatively, the same dataset can be assembled by

Guided-Wave Optical Biosensors

Science.gov (United States)

Passaro, Vittorio M. N.; Dell'Olio, Francesco; Casamassima, Biagio; De Leonardis, Francesco

2007-01-01

Guided-wave optical biosensors are reviewed in this paper. Advantages related to optical technologies are presented and integrated architectures are investigated in detail. Main classes of bio receptors and the most attractive optical transduction mechanisms are discussed. The possibility to use Mach-Zehnder and Young interferometers, microdisk and microring resonators, surface plasmon resonance, hollow and antiresonant waveguides, and Bragg gratings to realize very sensitive and selective, ultra-compact and fast biosensors is discussed. Finally, CMOS-compatible technologies are proved to be the most attractive for fabrication of guided-wave photonic biosensors.

Comparative physiological and proteomic analyses reveal the actions of melatonin in the reduction of oxidative stress in Bermuda grass (Cynodon dactylon (L). Pers.).

Science.gov (United States)

Shi, Haitao; Wang, Xin; Tan, Dun-Xian; Reiter, Russel J; Chan, Zhulong

2015-08-01

The fact of melatonin as an important antioxidant in animals led plant researchers to speculate that melatonin also acts in the similar manner in plants. Although melatonin has significant effects on alleviating stress-triggered reactive oxygen species (ROS), the involvement of melatonin in direct oxidative stress and the underlying physiological and molecular mechanisms remain unclear in plants. In this study, we found that exogenous melatonin significantly alleviated hydrogen peroxide (H2O2)-modulated plant growth, cell damage, and ROS accumulation in Bermuda grass. Additionally, 76 proteins significantly influenced by melatonin during mock or H2O2 treatment were identified by gel-free proteomics using iTRAQ (isobaric tags for relative and absolute quantitation). Metabolic pathway analysis showed that several pathways were markedly enhanced by melatonin and H2O2 treatments, including polyamine metabolism, ribosome pathway, major carbohydrate metabolism, photosynthesis, redox, and amino acid metabolism. Taken together, this study provides more comprehensive insights into the physiological and molecular mechanisms of melatonin in Bermuda grass responses to direct oxidative stress. This may relate to the activation of antioxidants, modulation of metabolic pathways, and extensive proteome reprograming. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Comparative study of the growth and carbon sequestration potential of Bermuda grass in industrial and urban areas

Directory of Open Access Journals (Sweden)

Usman Ali

2018-06-01

Full Text Available Climate change is a global phenomenon occurring throughout the world. Greenhouse gases (GHGs especially carbon dioxide (CO2 considered to be the major culprit to bring these changes. So, carbon (C sequestration by any mean could be useful to reduce the CO2 level in atmosphere. Turf grasses have the ability to sequester C and minimize the effects of GHGs on the environment. In order to study that how turf grasses can help in C sequestration, Bermuda grass (Cynodon dactylon was grown both at industrial and urban location and its effect on C storage were assessed by soil and plant analysis. Dry deposition of ammonium and nitrate was maximum at both locations through the year. However wet deposition was highest during the months of high rainfall. It was examined through soil analysis that soil organic matter, soil C and nitrogen in both locations increased after second mowing of grass. However, soil pH 6.68 in urban and 7.00 in industrial area and EC 1.86 dS/m in urban and 1.90 dS/m in industrial area decreased as the grass growth continue. Soil fresh weight (27.6 g in urban and (27.28 g industrial area also decreased after first and second mowing of grass. The C levels in plant dry biomass also increased which showed improved ability of plant to uptake C from the soil and store it. Similarly, chlorophyll contents were more in industrial area compared to urban area indicates the positive impact of high C concentration. Whereas stomatal conductance was reduced in high C environment to slow down respiration process. Hence, from present study it can be concluded that the Bermuda grass could be grown in areas with high C concentration in atmosphere for sequestrating C in soil.

BIOS Security Analysis and a Kind of Trusted BIOS

Science.gov (United States)

Zhou, Zhenliu; Xu, Rongsheng

The BIOS's security threats to computer system are analyzed and security requirements for firmware BIOS are summarized in this paper. Through discussion about TCG's trust transitivity, a new approach about CRTM implementation based on BIOS is developed. In this paper, we also put forward a new trusted BIOS architecture-UTBIOS which is built on Intel Framework for EFI/UEFI. The trustworthiness of UTBIOS is based on trusted hardware TPM. In UTBIOS, trust encapsulation and trust measurement are used to construct pre-OS trust chain. Performance of trust measurement is also analyzed in the end.

EcAMSat and BioSentinel: Autonomous Bio Nanosatellites Addressing Strategic Knowledge Gaps for Manned Spaceflight Beyond LEO

Science.gov (United States)

Padgen, Mike

2017-01-01

Manned missions beyond low Earth orbit (LEO) require that several strategic knowledge gaps about the effects of space travel on the human body be addressed. NASA Ames Research Center has been the leader in developing autonomous bio nanosatellites, including past successful missions for GeneSat, PharmaSat, and OOREOS, that tackled some of these issues. These nanosatellites provide in situ measurements, which deliver insight into the dynamic changes in cell behavior in microgravity. In this talk, two upcoming bio nanosatellites developed at Ames, the E. coli Antimicrobial Satellite (EcAMSat) and BioSentinel, will be discussed. Both satellites contain microfluidic systems that precisely deliver nutrients to the microorganisms stored within wells of fluidic cards. Each well, in turn, has its own 3-color LED and detector system which is used to monitor changes in metabolic activity with alamarBlue, a redox indicator, and the optical density of the cells. EcAMSat investigates the effects of microgravity on bacterial resistance to antimicrobial drugs, vital knowledge for understanding how to maintain the health of astronauts in long-term and beyond LEO spaceflight. The behavior of wild type and mutant uropathic E. coli will be compared in microgravity and with ground data to help understand the molecular mechanisms behind antibiotic resistance and how these phenotypes might change in space. BioSentinel seeks to directly measure the effects of space radiation on budding yeast S. cerevisiae, particularly double strand breaks (DSB). While hitching a ride on the SLS EM-1 mission (Orions first unmanned mission to the moon) in 2018, BioSentinel will be kicked off and enter into a heliocentric orbit, becoming the first study of the effects of radiation on living organisms outside LEO since the Apollo program. The yeast are stored in eighteen independent 16-well microfluidic cards, which will be individually activated over the 12 month mission duration. In addition to the wild

Photo- and bio-reactivity patterns of dissolved organic matter from biomass and soil leachates and surface waters in a subtropical wetland.

Science.gov (United States)

Chen, Meilian; Jaffé, Rudolf

2014-09-15

Dissolved organic carbon (DOC) measurements and optical properties were applied to assess the photo- and bio-reactivity of dissolved organic matter (DOM) from different sources, including biomass leaching, soil leaching and surface waters in a subtropical wetland ecosystem. Samples were exposed to light and/or dark incubated through controlled laboratory experiments. Changes in DOC, ultraviolet (UV-Vis) visible absorbance, and excitation-emission matrix (EEM) fluorescence combined with parallel factor analysis (PARAFAC) were performed to assess sample degradation. Degradation experiments showed that while significant amounts of DOC were consumed during bio-incubation for biomass leachates, a higher degree of bio-recalcitrance for soil leachate and particularly surface waters was displayed. Photo- and bio-humification transformations were suggested for sawgrass, mangrove, and seagrass leachates, as compared to substantial photo-degradation and very little to almost no change after bio-incubation for the other samples. During photo-degradation in most cases the EEM-PARAFAC components displayed photo-decay as compared to a few cases which featured photo-production. In contrast during bio-incubation most EEM-PARAFAC components proved to be mostly bio-refractory although some increases and decreases in abundance were also observed. Furthermore, the sequential photo- followed by bio-degradation showed, with some exceptions, a "priming effect" of light exposure on the bio-degradation of DOM, and the combination of these two processes resulted in a DOM composition more similar to that of the natural surface water for the different sub-environments. In addition, for leachate samples there was a general enrichment of one of the EEM-PARAFAC humic-like component (Ex/Em: bio-degradation process. This study exemplifies the effectiveness of optical property and EEM-PARAFAC in the assessment of DOM reactivity and highlights the importance of the coupling of photo- and bio

Natural product derivative BIO promotes recovery after myocardial infarction via unique modulation of the cardiac microenvironment

Science.gov (United States)

Kim, Yong Sook; Jeong, Hye-yun; Kim, Ah Ra; Kim, Woong-Hee; Cho, Haaglim; Um, JungIn; Seo, Youngha; Kang, Wan Seok; Jin, Suk-Won; Kim, Min Chul; Kim, Yong-Chul; Jung, Da-Woon; Williams, Darren R.; Ahn, Youngkeun

2016-01-01

The cardiac microenvironment includes cardiomyocytes, fibroblasts and macrophages, which regulate remodeling after myocardial infarction (MI). Targeting this microenvironment is a novel therapeutic approach for MI. We found that the natural compound derivative, BIO ((2′Z,3′E)-6-Bromoindirubin-3′-oxime) modulated the cardiac microenvironment to exert a therapeutic effect on MI. Using a series of co-culture studies, BIO induced proliferation in cardiomyocytes and inhibited proliferation in cardiac fibroblasts. BIO produced multiple anti-fibrotic effects in cardiac fibroblasts. In macrophages, BIO inhibited the expression of pro-inflammatory factors. Significantly, BIO modulated the molecular crosstalk between cardiac fibroblasts and differentiating macrophages to induce polarization to the anti-inflammatory M2 phenotype. In the optically transparent zebrafish-based heart failure model, BIO induced cardiomyocyte proliferation and completely recovered survival rate. BIO is a known glycogen synthase kinase-3β inhibitor, but these effects could not be recapitulated using the classical inhibitor, lithium chloride; indicating novel therapeutic effects of BIO. We identified the mechanism of BIO as differential modulation of p27 protein expression and potent induction of anti-inflammatory interleukin-10. In a rat MI model, BIO reduced fibrosis and improved cardiac performance. Histological analysis revealed modulation of the cardiac microenvironment by BIO, with increased presence of anti-inflammatory M2 macrophages. Our results demonstrate that BIO produces unique effects in the cardiac microenvironment to promote recovery post-MI. PMID:27510556

Customization of Protein Single Nanowires for Optical Biosensing.

Science.gov (United States)

Sun, Yun-Lu; Sun, Si-Ming; Wang, Pan; Dong, Wen-Fei; Zhang, Lei; Xu, Bin-Bin; Chen, Qi-Dai; Tong, Li-Min; Sun, Hong-Bo

2015-06-24

An all-protein single-nanowire optical biosensor is constructed by a facile and general femtosecond laser direct writing approach with nanoscale structural customization. As-formed protein single nanowires show excellent optical properties (fine waveguiding performance and bio-applicable transmission windows), and are utilized as evanescent optical nanobiosensors for label-free biotin detection. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

3.6-m Devasthal Optical Telescope Project: Completion and first results

Science.gov (United States)

Kumar, Brijesh; Omar, Amitesh; Maheswar, Gopinathan; Pandey, Anil Kumar; Sagar, Ram; Uddin, Wahab; Sanwal, Basant Ballabh; Bangia, Tarun; Kumar, Tripurari Satyanarayana; Yadav, Shobhit; Sahu, Sanjit; Pant, Jayshreekar; Reddy, Bheemireddy Krishna; Gupta, Alok Chandra; Chand, Hum; Pandey, Jeewan Chandra; Joshi, Mohit Kumar; Jaiswar, Mukeshkuma; Nanjappa, Nandish; Purushottam; Yadav, Rama Kant Singh; Sharma, Saurabh; Pandey, Shashi Bhushan; Joshi, Santosh; Joshi, Yogesh Chandra; Lata, Sneh; Mehdi, Biman Jyoti; Misra, Kuntal; Singh, Mahendra

2018-04-01

We present an update on the 3.6-m aperture optical telescope, which has been installed at Devasthal in the year 2016. In this paper, a brief overview of installation activities at site and first results are presented. The 3.6-m Devasthal Optical Telescope project was initiated in 2007 by the Aryabhatta Research Institute of Observational Sciences (ARIES; Nainital, India) in partnership with Belgium. The telescope has Ritchey-Chretien optics, an alt-azimuth mount, an active control of the primary and a corrected science field of view of 30' at the Cassegrain focus. The construction of the telescope enclosure building was completed in June 2014 and after successful installation of the telescope. The first engineering light was obtained on 22 March 2015. The on-sky performance of the telescope was carried out till February 2016.

Status of bio energy based on forest material - from the stub to the stove door; Status for bioenergi basert paa skogsvirke - fra stubben til ovnsdoera

Energy Technology Data Exchange (ETDEWEB)

Lileng, Joern K.; Gjoelsjoe, Simen

1999-07-01

It is not well documented in Norway who possesses the competence and who is the user of forest material as bio fuel. Forest material is forest chips, secondary products from forestry, and firewood. The project reported was a literature study that throws light on the problem by referring to central persons and institutions in this field. The report also is a general introduction to bio energy based on forest material. The principle sections deal with (1) Climate policy, (2) Energy carriers based on forest material, (3) Systems for selection and treatment of bio fuel, (4) Methods for calculation of the supply of biomass in the forest, (5) Returning ash to the forest, (6) Transport, (7) Storage, (8) Assessment of bio energy, (9) Abstract of relevant Norwegian reports, (10) Bio energy projects and bio energy actors in Norway and (11) Proposed research projects and research work on forest material as fuel.

'BioQuaRT' project: design of a novel in situ protocol for the simultaneous visualisation of chromosomal aberrations and micronuclei after irradiation at microbeam facilities

International Nuclear Information System (INIS)

Patrono, C.; Testa, A.; Monteiro Gil, O.; Giesen, U.; Langner, F.; Rabus, H.; Pinto, M.

2015-01-01

The aim of the 'BioQuaRT' (Biologically weighted Quantities in Radiotherapy) project is to develop measurement techniques for characterising charged particle track structure on different length scales, and to correlate at the cellular level the track structure properties with the biological effects of radiation. This multi-scale approach will allow characterisation of the radiation qualities used in radiotherapy and the related biological effects. Charged-particle microbeam facilities were chosen as the platforms for all radiobiology experiments in the 'BioQuaRT' project, because they allow targeting single cells (or compartments of a cell) with a predefined number of ionising particles and correlating the cell-by-cell induced damage with type and energy of the radiation and with the number of ions per cell. Within this project, a novel in situ protocol was developed for the analysis of the mis-repaired and/or unrepaired chromosome damage induced by charged-particle irradiations at the Physikalisch-Technische Bundesanstalt (PTB) ion microbeam facility. Among the cytogenetic biomarkers to detect and estimate radiation-induced DNA damage in radiobiology, chromosomal aberrations and micronuclei were chosen. The characteristics of the PTB irradiation system required the design of a special in situ assay: specific irradiation dishes with a base made from a bio-foil 25-μm thick and only 3000-4000 cells seeded and irradiated per dish. This method was developed on Chinese hamster ovary (CHO) cells, one of the most commonly used cell lines in radiobiology in vitro experiments. The present protocol allows the simultaneous scoring of chromosome aberrations and micronuclei on the same irradiated dish. Thanks to its versatility, this method could also be extended to other radiobiological applications besides the single-ion microbeam irradiations. (authors)

Overview of the Systems Analysis Framework for the EU Bioeconomy. Deliverable 1.4 of the EU FP 7 SAT-BBE project Systems Analysis Tools Framework for the EU Bio-Based Economy Strategy (SAT BBE)

NARCIS (Netherlands)

Leeuwen, van M.G.A.; Meijl, van H.; Smeets, E.M.W.; Tabeau-Kowalska, E.W.

2014-01-01

In November 2012 the Systems Analysis Tools Framework for the EU Bio-Based Economy Strategy project (SAT-BBE) was launched with the purpose to design an analysis tool useful to monitoring the evolution and impacts of the bioeconomy. In the SAT-BBE project the development of the analysis tool for the

Experimental and theoretical analysis for improved microscope design of optical projection tomographic microscopy.

Science.gov (United States)

Coe, Ryan L; Seibel, Eric J

2013-09-01

We present theoretical and experimental results of axial displacement of objects relative to a fixed condenser focal plane (FP) in optical projection tomographic microscopy (OPTM). OPTM produces three-dimensional, reconstructed images of single cells from two-dimensional projections. The cell rotates in a microcapillary to acquire projections from different perspectives where the objective FP is scanned through the cell while the condenser FP remains fixed at the center of the microcapillary. This work uses a combination of experimental and theoretical methods to improve the OPTM instrument design.

Ontology-Based Querying with Bio2RDF's Linked Open Data.

Science.gov (United States)

Callahan, Alison; Cruz-Toledo, José; Dumontier, Michel

2013-04-15

A key activity for life scientists in this post "-omics" age involves searching for and integrating biological data from a multitude of independent databases. However, our ability to find relevant data is hampered by non-standard web and database interfaces backed by an enormous variety of data formats. This heterogeneity presents an overwhelming barrier to the discovery and reuse of resources which have been developed at great public expense.To address this issue, the open-source Bio2RDF project promotes a simple convention to integrate diverse biological data using Semantic Web technologies. However, querying Bio2RDF remains difficult due to the lack of uniformity in the representation of Bio2RDF datasets. We describe an update to Bio2RDF that includes tighter integration across 19 new and updated RDF datasets. All available open-source scripts were first consolidated to a single GitHub repository and then redeveloped using a common API that generates normalized IRIs using a centralized dataset registry. We then mapped dataset specific types and relations to the Semanticscience Integrated Ontology (SIO) and demonstrate simplified federated queries across multiple Bio2RDF endpoints. This coordinated release marks an important milestone for the Bio2RDF open source linked data framework. Principally, it improves the quality of linked data in the Bio2RDF network and makes it easier to access or recreate the linked data locally. We hope to continue improving the Bio2RDF network of linked data by identifying priority databases and increasing the vocabulary coverage to additional dataset vocabularies beyond SIO.

Nano-bio-sensing

CERN Document Server

Carrara, Sandro

2011-01-01

This book examines state-of-the-art applications of nano-bio-sensing. It brings together researchers from nano-electronics and bio-technology, providing multidisciplinary content from nano-structures fabrication to bio-sensing applications.

Study of bio-oil and bio-char production from algae by slow pyrolysis

International Nuclear Information System (INIS)

Chaiwong, K.; Kiatsiriroat, T.; Vorayos, N.; Thararax, C.

2013-01-01

This study examined bio-oil and bio-char fuel produced from Spirulina Sp. by slow pyrolysis. A thermogravimetric analyser (TGA) was used to investigate the pyrolytic characteristics and essential components of algae. It was found that the temperature for the maximum degradation, 322 °C, is lower than that of other biomass. With our fixed-bed reactor, 125 g of dried Spirulina Sp. algae was fed under a nitrogen atmosphere until the temperature reached a set temperature between 450 and 600 °C. It was found that the suitable temperature to obtain bio-char and bio-oil were at approximately 500 and 550 °C respectively. The bio-oil components were identified by a gas chromatography/mass spectrometry (GC–MS). The saturated functional carbon of the bio-oil was in a range of heavy naphtha, kerosene and diesel oil. The energy consumption ratio (ECR) of bio-oil and bio-char was calculated, and the net energy output was positive. The ECR had an average value of 0.49. -- Highlights: •Bio-oil and bio-char fuel produced from Spirulina Sp. by slow pyrolysis. •Suitable temperature to obtained bio-oil and bio-char were at about 550 and 500 °C. •Saturated functional carbon of bio-oil was heavy naphtha, kerosene, diesel oil. •ECR had an average value of 0.49

From marine bio-corrosion to new bio-processes

International Nuclear Information System (INIS)

Bergel, A.; Dasilva, S.; Basseguy, R.; Feron, D.; Mollica, A.

2004-01-01

Full text of publication follows: From the middle of the last century it has been observed that the development of marine bio-films on the surface of stainless steels and different metallic materials induces the ennoblement of their free corrosion potential. A main step in deciphering the mechanisms of aerobic marine bio-corrosion has been achieved around 1976 with the demonstration that the potential ennoblement was due to the modification of the cathodic process. Since this date, the catalysis of oxygen reduction by marine bio-films has been the topic of numerous controversies, but it is now commonly agreed as a basic phenomena in aerobic corrosion. Several hypotheses have been proposed to explain the fine mechanisms of the bio-film-catalysed reduction of oxygen: intermediate formation of hydrogen peroxide, modification of the oxide layer on the stainless steel surface, involvement of manganese species and manganese oxidising bacteria, catalysis by proteins produced by the micro-organisms... Recent results may confirm the possible involvement of hemic enzymes or proteins. Whatever the mechanisms, very promising results have been obtained with the possible application of bio-film-catalysed oxygen reduction to conceive innovative biofuel cells with stainless steel electrodes. Actually, the catalysis of oxygen reduction is a key step that still drastically hinders the development of economically efficient hydrogen/oxygen fuel cells. The current technology requires high amounts of platinum or platinum-based materials to catalyze oxygen reduction on the cathode of these cells. The prohibitive cost of platinum is a main obstacle to the commercialization of low-cost fuel cells. Unpublished results recently showed that adapting the enzyme-catalysed reaction that was assumed for bio-corrosion on the cathode of hydrogen/oxygen fuel cells may lead to a significant decrease in the charge of platinum. Moreover, it was demonstrated on a laboratory-scale fuel cell pilot that

BioWires: DNA-Based Nanowires for Conductivity-Enhanced, Self-Assembling Nanoelectronics

Data.gov (United States)

National Aeronautics and Space Administration — The BioWires project seeks to overcome two central issues identified in TA10-Nanotechnology: first, the miniaturization of nanoelectronics systems with features less...

New York Nano-Bio Molecular Information Technology (NYNBIT) Incubator

Energy Technology Data Exchange (ETDEWEB)

Das, Digendra K

2008-12-19

This project presents the outcome of an effort made by a consortium of six universities in the State of New York to develop a Center for Advanced technology (CAT) in the emerging field of Nano-Bio-Molecular Information Technology. The effort consists of activities such as organization of the NYNBIT incubator, collaborative research projects, development of courses, an educational program for high schools, and commercial start-up programs.

Study for a simplified LCA methodology adapted to bio-products. Final report

International Nuclear Information System (INIS)

2009-01-01

Agricultural resources form a renewable stock of raw materials that can be used for various purposes: food supply, production of energy (including biofuels), bio-products and bio-based construction materials. The use of agricultural resources to produce bio-products is expanding in France and throughout the world, partly due to the presumed advantages of these products towards the environment. In this context, ADEME (the French Environment and Energy Management Agency) commissioned a study for the development of a methodological framework to evaluate the environmental impacts of bio-products. This study was also in charge of the identification of areas of improvement for the 'Bilan Produit', an environmental assessment tool developed by ADEME, in order to allow a future integration of bio-products. The first step of this study consisted of a comparative review of the existing bio-products' LCA (Life Cycle Assessment). This review underlined a deep heterogeneity among the methodologies used, as well as a lack of transparency in the results displayed. In a second step of the project, all the methodological issues in the evaluation of bio-products were studied, and recommendations for the resolution of each one of them have been proposed. These critical analyses are presented in individual fact-sheets, which detail the specific issues of each question, facts from the bibliographic review, the results of the tests conducted on three bio-products, and finally the methodological recommendations to answer the question. This project showed that some methodological recommendations had to be specified depending on the objective of the LCA: eco-design, environmental labeling or comparative LCA. The work conducted also identified some necessary improvements to the Bilan Produit tool, which come under four categories: addition of the missing inventories, integration of metadata regarding the inventories, consideration for the specific end-of-life scenarios of bio-products, and

Effects of ethylene on photosystem II and antioxidant enzyme activity in Bermuda grass under low temperature.

Science.gov (United States)

Hu, Zhengrong; Fan, Jibiao; Chen, Ke; Amombo, Erick; Chen, Liang; Fu, Jinmin

2016-04-01

The phytohormone ethylene has been reported to mediate plant response to cold stress. However, it is still debated whether the effect of ethylene on plant response to cold stress is negative or positive. The objective of the present study was to explore the role of ethylene in the cold resistance of Bermuda grass (Cynodon dactylon (L).Pers.). Under control (warm) condition, there was no obvious effect of the ethylene precursor 1-aminocyclopropane-1-carboxylic acid (ACC) or the antagonist Ag(+) of ethylene signaling on electrolyte leakage (EL) and malondialdehyde (MDA) content. Under cold stress conditions, ACC-treated plant leaves had a greater level of EL and MDA than the untreated leaves. However, the EL and MDA values were lower in the Ag(+) regime versus the untreated. In addition, after 3 days of cold treatment, ACC remarkably reduced the content of soluble protein and also altered antioxidant enzyme activity. Under control (warm) condition, there was no significant effect of ACC on the performance of photosystem II (PS II) as monitored by chlorophyll α fluorescence transients. However, under cold stress, ACC inhibited the performance of PS II. Under cold condition, ACC remarkably reduced the performance index for energy conservation from excitation to the reduction of intersystem electron acceptors (PI(ABS)), the maximum quantum yield of primary photochemistry (φP0), the quantum yield of electron transport flux from Q(A) to Q(B) (φE0), and the efficiency/probability of electron transport (ΨE0). Simultaneously, ACC increased the values of specific energy fluxes for absorption (ABS/RC) and dissipation (DI0/RC) after 3 days of cold treatment. Additionally, under cold condition, exogenous ACC altered the expressions of several related genes implicated in the induction of cold tolerance (LEA, SOD, POD-1 and CBF1, EIN3-1, and EIN3-2). The present study thus suggests that ethylene affects the cold tolerance of Bermuda grass by impacting the antioxidant system

The BioHub Knowledge Base: Ontology and Repository for Sustainable Biosourcing.

Science.gov (United States)

Read, Warren J; Demetriou, George; Nenadic, Goran; Ruddock, Noel; Stevens, Robert; Winter, Jerry

2016-06-01

The motivation for the BioHub project is to create an Integrated Knowledge Management System (IKMS) that will enable chemists to source ingredients from bio-renewables, rather than from non-sustainable sources such as fossil oil and its derivatives. The BioHubKB is the data repository of the IKMS; it employs Semantic Web technologies, especially OWL, to host data about chemical transformations, bio-renewable feedstocks, co-product streams and their chemical components. Access to this knowledge base is provided to other modules within the IKMS through a set of RESTful web services, driven by SPARQL queries to a Sesame back-end. The BioHubKB re-uses several bio-ontologies and bespoke extensions, primarily for chemical feedstocks and products, to form its knowledge organisation schema. Parts of plants form feedstocks, while various processes generate co-product streams that contain certain chemicals. Both chemicals and transformations are associated with certain qualities, which the BioHubKB also attempts to capture. Of immediate commercial and industrial importance is to estimate the cost of particular sets of chemical transformations (leading to candidate surfactants) performed in sequence, and these costs too are captured. Data are sourced from companies' internal knowledge and document stores, and from the publicly available literature. Both text analytics and manual curation play their part in populating the ontology. We describe the prototype IKMS, the BioHubKB and the services that it supports for the IKMS. The BioHubKB can be found via http://biohub.cs.manchester.ac.uk/ontology/biohub-kb.owl .

(Bio)hybrid materials based on optically active particles

Science.gov (United States)

Reitzig, Manuela; Härtling, Thomas; Opitz, Jörg

2014-03-01

In this contribution we provide an overview of current investigations on optically active particles (nanodiamonds, upconversion phospors) for biohybrid and sensing applications. Due to their outstanding properties nanodiamonds gain attention in various application elds such as microelectronics, optical monitoring, medicine, and biotechnology. Beyond the typical diamond properties such as high thermal conductivity and extreme hardness, the carbon surface and its various functional groups enable diverse chemical and biological surface functionalization. At Fraunhofer IKTS-MD we develop a customization of material surfaces via integration of chemically modi ed nanodiamonds at variable surfaces, e.g bone implants and pipelines. For the rst purpose, nanodiamonds are covalently modi ed at their surface with amino or phosphate functionalities that are known to increase adhesion to bone or titanium alloys. The second type of surface is approached via mechanical implementation into coatings. Besides nanodiamonds, we also investigate the properties of upconversion phosphors. In our contribution we show how upconversion phosphors are used to verify sterilization processes via a change of optical properties due to sterilizing electron beam exposure.

Mutation breeding of vegetatively propagated turf and forage Bermuda grass

International Nuclear Information System (INIS)

Burton, G.W.; Hanna, W.W.

1982-01-01

Tifgreen, Tifway and Tifdwarf, sterile triploid (2n = 27)F 1 hybrids between Cynodon dactylon and C. transvaalensis, are widely used turf grasses bred at Tifton, Georgia. They cannot be improved by conventional breeding methods. Attempts to improve them by treating short dormant rhizome sections with EMS failed but exposing them to 7-9 kR of gamma radiation produced 158 mutants. These have been evaluated at Tifton, and Beltsville, Maryland, and nine that appear to be better than the parents in one or more characteristics were planted in 8 x 10 m plots in triplicate in 1977. Test results to date suggest that one or more of these will be good enough to warrant a name and release to the public. Coastcross-1 is an outstanding sterile F 1 hybrid Bermuda grass that gives 35% more beef per acre but lacks winter hardiness. Since 1971, several million sprigs of Coastcross-1 have been exposed to 7 kR and have been planted and screened for winter survival at the Georgia Mountain Experiment Station. Chlorophyll-deficient mutants have appeared and one mutant slightly, but significantly, more winter hardy than Coastcross-1 has been obtained. Sprigs of this mutant named Coastcross 1-M3 are being irradiated and screened in an attempt to increase its winter hardiness. (author)

A new bio-optical algorithm for the remote sensing of algal blooms in complex ocean waters

Science.gov (United States)

Shanmugam, Palanisamy

2011-04-01

A new bio-optical algorithm has been developed to provide accurate assessments of chlorophyll a (Chl a) concentration for detection and mapping of algal blooms from satellite data in optically complex waters, where the presence of suspended sediments and dissolved substances can interfere with phytoplankton signal and thus confound conventional band ratio algorithms. A global data set of concurrent measurements of pigment concentration and radiometric reflectance was compiled and used to develop this algorithm that uses the normalized water-leaving radiance ratios along with an algal bloom index (ABI) between three visible bands to determine Chl a concentrations. The algorithm is derived using Sea-viewing Wide Field-of-view Sensor bands, and it is subsequently tuned to be applicable to Moderate Resolution Imaging Spectroradiometer (MODIS)/Aqua data. When compared with large in situ data sets and satellite matchups in a variety of coastal and ocean waters the present algorithm makes good retrievals of the Chl a concentration and shows statistically significant improvement over current global algorithms (e.g., OC3 and OC4v4). An examination of the performance of these algorithms on several MODIS/Aqua images in complex waters of the Arabian Sea and west Florida shelf shows that the new algorithm provides a better means for detecting and differentiating algal blooms from other turbid features, whereas the OC3 algorithm has significant errors although yielding relatively consistent results in clear waters. These findings imply that, provided that an accurate atmospheric correction scheme is available to deal with complex waters, the current MODIS/Aqua, MERIS and OCM data could be extensively used for quantitative and operational monitoring of algal blooms in various regional and global waters.

Production of bio-oil with flash pyrolysis; Biooeljyn tuotanto flash-pyrolyysillae ja sen poltto

Energy Technology Data Exchange (ETDEWEB)

Nyroenen, T [Vapo Oy, Jyvaeskylae (Finland)

1997-12-01

The target of the R and D work is to study the production of bio-oils using Flash-pyrolysis technology and utilisation of the bio-oil in oil-fuelled boilers. The PDU-unit was installed at VTT Energy in Otaniemi in April 1996. The first test were carried out in June. In the whole project Vapo Oy is responsible for: acquiring the 20 kg/h PDU-device for development; follow up of the engine tests; the investment of 5 MW demonstration plant; to carry on the boiler and engine tests with Finnish bio-oils. (orig.)

Combined Atmospheric and Ocean Profiling from an Airborne High Spectral Resolution Lidar

Directory of Open Access Journals (Sweden)

Hair Johnathan

2016-01-01

Full Text Available First of its kind combined atmospheric and ocean profile data were collected by the recently upgraded NASA Langley Research Center’s (LaRC High Spectral Resolution Lidar (HSRL-1 during the 17 July – 7 August 2014 Ship-Aircraft Bio-Optical Research Experiment (SABOR. This mission sampled over a region that covered the Gulf of Maine, open-ocean near Bermuda, and coastal waters from Virginia to Rhode Island. The HSRL-1 and the Research Scanning Polarimeter from NASA Goddard Institute for Space Studies collected data onboard the NASA LaRC King Air aircraft and flight operations were closely coordinated with the Research Vessel Endeavor that made in situ ocean optical measurements. The lidar measurements provided profiles of atmospheric backscatter and particulate depolarization at 532nm, 1064nm, and extinction (532nm from approximately 9km altitude. In addition, for the first time HSRL seawater backscatter, depolarization, and diffuse attenuation data at 532nm were collected and compared to both the ship measurements and the Moderate Resolution Imaging Spectrometer (NASA MODIS-Aqua satellite ocean retrievals.

Functionalizing 2PP-fabricated microtools for optical manipulation on the BioPhotonics Workstation

DEFF Research Database (Denmark)

Matsuoka, Tomoyo; Nishi, Masayuki; Sakakura, Masaaki

Functionalization of the structures fabricated by two-photon polymerization was achieved by coating them with sol-gel materials, which contain calcium indicators. The structures are expected to work potentially as nano-sensors on the BioPhotonics Workstation....

Development of a bio-chip dedicated to planetary exploration. First step: resistance studies to space conditions

International Nuclear Information System (INIS)

Le Postollec, A.; Dobrijevic, M.; Incerti, S.; Moretto, Ph.; Seznec, H.; Desorgher, L.; Santin, G.; Nieminen, P.; Dartnell, L.; Vandenabeele-Trambouze, O.; Coussot, G.

2008-02-01

For upcoming exploration missions, space agencies advocate the development of a new promising technique to search for traces of extent or extinct life: the bio-chip use. A bio-chip is a miniaturized device composed of biological sensitive systems fixed on a solid substrate. As space is a hazardous environment, a main concern relies on the resistance of a bio-chip to a panel of harsh constraints among which the resistance to radiations. Within the framework of the BiOMAS (Bio-chip for Organic Matter Analysis in Space) project, our team is currently developing a bio-chip especially designed for planetary exploration. We present here the methodology adopted and the beginning experiments to select the best constituents, to determine resistance levels and to define well-adapted protection for the bio-chip

BioContainers: an open-source and community-driven framework for software standardization

Science.gov (United States)

da Veiga Leprevost, Felipe; Grüning, Björn A.; Alves Aflitos, Saulo; Röst, Hannes L.; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C.; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I.; Perez-Riverol, Yasset

2017-01-01

Abstract Motivation BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). Availability and Implementation The software is freely available at github.com/BioContainers/. Contact yperez@ebi.ac.uk PMID:28379341

BioContainers: an open-source and community-driven framework for software standardization.

Science.gov (United States)

da Veiga Leprevost, Felipe; Grüning, Björn A; Alves Aflitos, Saulo; Röst, Hannes L; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I; Perez-Riverol, Yasset

2017-08-15

BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). The software is freely available at github.com/BioContainers/. yperez@ebi.ac.uk. © The Author(s) 2017. Published by Oxford University Press.

Bio Diesel Cellulosic Ethanol Research Project

Energy Technology Data Exchange (ETDEWEB)

Hanlon, Edward A. [County of Hendry, FL (United States); Capece, John C. [County of Hendry, FL (United States); McAvoy, Eugene [County of Hendry, FL (United States); Hodges, Alan Wayne [County of Hendry, FL (United States); Shukla, Sanjay [County of Hendry, FL (United States); Ozores-Hamilton, Monica [County of Hendry, FL (United States); Gilbert, Rob [County of Hendry, FL (United States); Wright, Alan [County of Hendry, FL (United States); Baucum, L. [County of Hendry, FL (United States)

2017-02-07

The objective of the project is to create the Hendry County Sustainable Biofuels Center and initiate its research, development, and education programs. The mission is to develop engineering and economic assessment methods to evaluate the natural resources impacts of biomass farming and fuel conversion systems; provide sustainability assessments of specific biofuels productions proposals; develop biomass farming and fuel conversion systems that are compatible with south Florida ecosystem restoration priorities; create ecosystem services opportunities and structures to diversify farm income; monitor the range of research and development activities necessary to the creation of sutstainable biofuels production systems in south Florida, identify gaps in the regional research, and assist in the development and coordination of additional projects to fill out the required knowledge base; prepare the workforce of southwest Florida for employment in biofuels related professions; and assist businesses & governmental design and realize sustainable biofuels projects.

Optics and Fluid Dynamics Department annual progress report for 2000

International Nuclear Information System (INIS)

Hanson, S.G.; Johansen, P.M.; Lynov, J.P.; Skaarup, B.

2001-05-01

The Optics and Fluid Dynamics Department performs basic and applied research within three scientific programmes: (1) optical materials, (2) optical diagnostics and information processing and (3) plasma and fluid dynamics. The department has core competence in: optical sensors, optical materials, optical storage, bio-optics, numerical modelling and information processing, non-linear dynamics and fusion plasma physics. The research is supported by several EU programmes, including EURATOM, by Danish research councils and by industry. A summary of the activities in 2000 is presented. (au)

Comparative techno-economic analysis of biohydrogen production via bio-oil gasification and bio-oil reforming

International Nuclear Information System (INIS)

Zhang, Yanan; Brown, Tristan R.; Hu, Guiping; Brown, Robert C.

2013-01-01

This paper evaluates the economic feasibility of biohydrogen production via two bio-oil processing pathways: bio-oil gasification and bio-oil reforming. Both pathways employ fast pyrolysis to produce bio-oil from biomass stock. The two pathways are modeled using Aspen Plus ® for a 2000 t d −1 facility. Equipment sizing and cost calculations are based on Aspen Economic Evaluation® software. Biohydrogen production capacity at the facility is 147 t d −1 for the bio-oil gasification pathway and 160 t d −1 for the bio-oil reforming pathway. The biomass-to-fuel energy efficiencies are 47% and 84% for the bio-oil gasification and bio-oil reforming pathways, respectively. Total capital investment (TCI) is 435 million dollars for the bio-oil gasification pathway and is 333 million dollars for the bio-oil reforming pathway. Internal rates of return (IRR) are 8.4% and 18.6% for facilities employing the bio-oil gasification and bio-oil reforming pathways, respectively. Sensitivity analysis demonstrates that biohydrogen price, biohydrogen yield, fixed capital investment (FCI), bio-oil yield, and biomass cost have the greatest impacts on facility IRR. Monte-Carlo analysis shows that bio-oil reforming is more economically attractive than bio-oil gasification for biohydrogen production. -- Highlights: ► Biohydrogen production via bio-oil reforming has higher energy efficiency compared to gasification. ► Hydrogen price, fixed capital cost, and feedstock cost most strongly affect IRR. ► Lower risk investment is biohydrogen production via bio-oil reforming

Ruminal production of methane ''in vitro'' with Coast Cross No. 1 bermuda grass (Cynodon dactylon)

Energy Technology Data Exchange (ETDEWEB)

Geerken, C M; Funes, F; Gonzalez, R

1980-11-01

1. Samples of Coast Cross No. 1 bermuda grass (Cynodon dactylon) of 3, 6, 9, 12 and 15 days of cut, irrigated and fertilized at a rate of 400 kg N/ha/year, were used to determine their bromatological composition, digestibility and methane production ''in vitro''. 2. Crude protein concentration of the pasture fell sharply from 20 to 4% and crude fibre increased from 26 to 34% as the pasture grew older. DM digestibility decreased from 58 to 44% from the 6th to the 15th week of cut. Methane production ''in vitro'' was significantly lower (P is less than 0,01), at 3 and 6 weeks, than that obtained at older ages. The differences were more marked when calculated per unit of digested DM. 3. These results could be of interest in the search of a better utilization of dietary energy for grazing animals. (Refs. 16).

Depleted Uranium Toxicity, Accumulation, and Uptake in Cynodon dactylon (Bermuda) and Aristida purpurea (Purple Threeawn).

Science.gov (United States)

Butler, Afrachanna D; Wynter, Michelle; Medina, Victor F; Bednar, Anthony J

2016-06-01

Yuma Proving Grounds (YPG) in western Arizona is a testing range where Depleted uranium (DU) penetrators have been historically fired. A portion of the fired DU penetrators are being managed under controlled conditions by leaving them in place. The widespread use of DU in armor-penetrating weapons has raised environmental and human health concerns. The present study is focused on the onsite management approach and on the potential interactions with plants local to YPG. A 30 day study was conducted to assess the toxicity of DU corrosion products (e.g., schoepite and meta-schoepite) in two grass species that are native to YPG, Bermuda (Cynodon dactylon) and Purple Threeawn (Aristida purpurea). In addition, the ability for plants to uptake DU was studied. The results of this study show a much lower threshold for biomass toxicity and higher plant concentrations, particularly in the roots than shoots, compared to previous studies.

D-Amino acid oxidase bio-functionalized platforms: Toward an enhanced enzymatic bio-activity

Science.gov (United States)

Herrera, Elisa; Valdez Taubas, Javier; Giacomelli, Carla E.

2015-11-01

The purpose of this work is to study the adsorption process and surface bio-activity of His-tagged D-amino acid oxidase (DAAO) from Rhodotorula gracilis (His6-RgDAAO) as the first step for the development of an electrochemical bio-functionalized platform. With such a purpose this work comprises: (a) the His6-RgDAAO bio-activity in solution determined by amperometry, (b) the adsorption mechanism of His6-RgDAAO on bare gold and carboxylated modified substrates in the absence (substrate/COO-) and presence of Ni(II) (substrate/COO- + Ni(II)) determined by reflectometry, and (c) the bio-activity of the His6-RgDAAO bio-functionalized platforms determined by amperometry. Comparing the adsorption behavior and bio-activity of His6-RgDAAO on these different solid substrates allows understanding the contribution of the diverse interactions responsible for the platform performance. His6-RgDAAO enzymatic performance in solution is highly improved when compared to the previously used pig kidney (pk) DAAO. His6-RgDAAO exhibits an amperometrically detectable bio-activity at concentrations as low as those expected on a bio-functional platform; hence, it is a viable bio-recognition element of D-amino acids to be coupled to electrochemical platforms. Moreover, His6-RgDAAO bio-functionalized platforms exhibit a higher surface activity than pkDAAO physically adsorbed on gold. The platform built on Ni(II) modified substrates present enhanced bio-activity because the surface complexes histidine-Ni(II) provide with site-oriented, native-like enzymes. The adsorption mechanism responsible of the excellent performance of the bio-functionalized platform takes place in two steps involving electrostatic and bio-affinity interactions whose prevalence depends on the degree of surface coverage.

Project in fiscal 1988 for research and development of basic technologies in next generation industries. Achievement report on research and development of bio-reactors; 1988 nendo bio reactor no kenkyu kaihatsu seika hokokusho

Energy Technology Data Exchange (ETDEWEB)

NONE

1989-03-01

Research and development has been performed on bio-reactors to substitute the oxidizing reaction process, and on reduction reacting bio-reactors to fix the coenzyme regeneration system. This paper summarizes the achievements in fiscal 1988. In the research of a bio-reactor using bacteria that produce muconic acid from benzoic acid, stable productivity of 60 g/L/day or more was obtained. In the research of a multi-phase based bio-reactor composed of air, oil, water and biomass, discussions were given on the phase inverting film permeation type reactor. In the research of a bio-reactor to produce acetic acid from carbon dioxide and hydrogen, productivity of 149 g/L/day as maximum was achieved by enhancing the production speed by means of pressurization. In the research of a bio-reactor to produce hydroquinone from phenol, up-keeping the duration for 100 hours or longer has become possible at the hydroquinone production speed of 3 g/L/h. In the research of a reduction-based bio-reactor incorporating the regeneration system of coenzyme NAD(P)H, discussions were given on optimizing the continuous enzymatic reaction in the production of sorbitol. (NEDO)

Did Caravaggio employ optical projections? An image analysis of the parity in the artist's paintings

Science.gov (United States)

Stork, David G.

2011-03-01

We examine one class of evidence put forth in support of the recent claim that the Italian Baroque master Caravaggio secretly employed optical projectors as a direct drawing aid. Specically, we test the claims that there is an "abnormal number" of left-handed gures in his works and, more specically, that "During the Del Monte period he had too many left-handed models." We also test whether there was a reversal in the handedness of specic models in different paintings. Such evidence would be consistent with the claim that Caravaggio switched between using a convex-lens projector to using a concave-mirror projector and would support, but not prove, the claim that Caravaggio used optical projections. We estimate the parity (+ or -) of each of Caravaggio's 76 appropriate oil paintings based on the handedness of gures, the orientation of asymmetric objects, placement of scabbards, depicted text, and so on, and search for statistically significant changes in handedness in figures. We also track the direction of the illumination over time in the artist's uvre. We discuss some historical evidence as it relates to the question of his possible use of optics. We nd the proportion of left-handed figures lower than that in the general population (not higher), and no significant change in estimated handedness even of individual models. Optical proponents have argued that Bacchus (1597) portrays a left-handed gure, but we give visual and cultural evidence showing that this gure is instead right-handed, thereby rebutting this claim that the painting was executed using optical projections. Moreover, scholars recently re-discovered the image of the artist with easel and canvas reflected in the carafe of wine at the front left in the tableau in Bacchus, showing that this painting was almost surely executed using traditional (non-optical) easel methods. We conclude that there is 1) no statistically signicant abnormally high number of left-handed gures in Caravaggio's uvre, including

Localized surface plasmon resonance with five-branched gold nanostars in a plastic optical fiber for bio-chemical sensor implementation.

Science.gov (United States)

Cennamo, Nunzio; D'Agostino, Girolamo; Donà, Alice; Dacarro, Giacomo; Pallavicini, Piersandro; Pesavento, Maria; Zeni, Luigi

2013-10-29

In this paper a refractive index sensor based on localized surface plasmon resonance (LSPR) in a Plastic Optical Fiber (POF), is presented and experimentally tested. LSPR is achieved exploiting five-branched gold nanostars (GNS) obtained using Triton X-100 in a seed-growth synthesis. They have the uncommon feature of three localized surface plasmon resonances. The strongest LSPRs fall in two ranges, one in the 600-900 nm range (LSPR 2) and the other one in the 1,100-1,600 nm range (LSPR 3), both sensible to refractive index changes. Anyway, due to the extremely strong attenuation (>10(2) dB/m) of the employed POF in the 1,100-1,600 nm range, only LSPR 2 will be exploited for refractive index change measurements, useful for bio-chemical sensing applications, as a proof of principle of the possibility of realizing a compact, low cost and easy-to-use GNS based device.

Localized Surface Plasmon Resonance with Five-Branched Gold Nanostars in a Plastic Optical Fiber for Bio-Chemical Sensor Implementation

Science.gov (United States)

Cennamo, Nunzio; D'Agostino, Girolamo; Donà, Alice; Dacarro, Giacomo; Pallavicini, Piersandro; Pesavento, Maria; Zeni, Luigi

2013-01-01

In this paper a refractive index sensor based on localized surface plasmon resonance (LSPR) in a Plastic Optical Fiber (POF), is presented and experimentally tested. LSPR is achieved exploiting five-branched gold nanostars (GNS) obtained using Triton X-100 in a seed-growth synthesis. They have the uncommon feature of three localized surface plasmon resonances. The strongest LSPRs fall in two ranges, one in the 600–900 nm range (LSPR 2) and the other one in the 1,100–1,600 nm range (LSPR 3), both sensible to refractive index changes. Anyway, due to the extremely strong attenuation (>102 dB/m) of the employed POF in the 1,100–1,600 nm range, only LSPR 2 will be exploited for refractive index change measurements, useful for bio-chemical sensing applications, as a proof of principle of the possibility of realizing a compact, low cost and easy-to-use GNS based device. PMID:24172284

Localized Surface Plasmon Resonance with Five-Branched Gold Nanostars in a Plastic Optical Fiber for Bio-Chemical Sensor Implementation

Directory of Open Access Journals (Sweden)

Luigi Zeni

2013-10-01

Full Text Available In this paper a refractive index sensor based on localized surface plasmon resonance (LSPR in a Plastic Optical Fiber (POF, is presented and experimentally tested. LSPR is achieved exploiting five-branched gold nanostars (GNS obtained using Triton X-100 in a seed-growth synthesis. They have the uncommon feature of three localized surface plasmon resonances. The strongest LSPRs fall in two ranges, one in the 600–900 nm range (LSPR 2 and the other one in the 1,100–1,600 nm range (LSPR 3, both sensible to refractive index changes. Anyway, due to the extremely strong attenuation (>102 dB/m of the employed POF in the 1,100–1,600 nm range, only LSPR 2 will be exploited for refractive index change measurements, useful for bio-chemical sensing applications, as a proof of principle of the possibility of realizing a compact, low cost and easy-to-use GNS based device.

BioWord: A sequence manipulation suite for Microsoft Word

Directory of Open Access Journals (Sweden)

Anzaldi Laura J

2012-06-01

Full Text Available Abstract Background The ability to manipulate, edit and process DNA and protein sequences has rapidly become a necessary skill for practicing biologists across a wide swath of disciplines. In spite of this, most everyday sequence manipulation tools are distributed across several programs and web servers, sometimes requiring installation and typically involving frequent switching between applications. To address this problem, here we have developed BioWord, a macro-enabled self-installing template for Microsoft Word documents that integrates an extensive suite of DNA and protein sequence manipulation tools. Results BioWord is distributed as a single macro-enabled template that self-installs with a single click. After installation, BioWord will open as a tab in the Office ribbon. Biologists can then easily manipulate DNA and protein sequences using a familiar interface and minimize the need to switch between applications. Beyond simple sequence manipulation, BioWord integrates functionality ranging from dyad search and consensus logos to motif discovery and pair-wise alignment. Written in Visual Basic for Applications (VBA as an open source, object-oriented project, BioWord allows users with varying programming experience to expand and customize the program to better meet their own needs. Conclusions BioWord integrates a powerful set of tools for biological sequence manipulation within a handy, user-friendly tab in a widely used word processing software package. The use of a simple scripting language and an object-oriented scheme facilitates customization by users and provides a very accessible educational platform for introducing students to basic bioinformatics algorithms.

BioWord: A sequence manipulation suite for Microsoft Word

Science.gov (United States)

2012-01-01

Background The ability to manipulate, edit and process DNA and protein sequences has rapidly become a necessary skill for practicing biologists across a wide swath of disciplines. In spite of this, most everyday sequence manipulation tools are distributed across several programs and web servers, sometimes requiring installation and typically involving frequent switching between applications. To address this problem, here we have developed BioWord, a macro-enabled self-installing template for Microsoft Word documents that integrates an extensive suite of DNA and protein sequence manipulation tools. Results BioWord is distributed as a single macro-enabled template that self-installs with a single click. After installation, BioWord will open as a tab in the Office ribbon. Biologists can then easily manipulate DNA and protein sequences using a familiar interface and minimize the need to switch between applications. Beyond simple sequence manipulation, BioWord integrates functionality ranging from dyad search and consensus logos to motif discovery and pair-wise alignment. Written in Visual Basic for Applications (VBA) as an open source, object-oriented project, BioWord allows users with varying programming experience to expand and customize the program to better meet their own needs. Conclusions BioWord integrates a powerful set of tools for biological sequence manipulation within a handy, user-friendly tab in a widely used word processing software package. The use of a simple scripting language and an object-oriented scheme facilitates customization by users and provides a very accessible educational platform for introducing students to basic bioinformatics algorithms. PMID:22676326

BioWord: a sequence manipulation suite for Microsoft Word.

Science.gov (United States)

Anzaldi, Laura J; Muñoz-Fernández, Daniel; Erill, Ivan

2012-06-07

The ability to manipulate, edit and process DNA and protein sequences has rapidly become a necessary skill for practicing biologists across a wide swath of disciplines. In spite of this, most everyday sequence manipulation tools are distributed across several programs and web servers, sometimes requiring installation and typically involving frequent switching between applications. To address this problem, here we have developed BioWord, a macro-enabled self-installing template for Microsoft Word documents that integrates an extensive suite of DNA and protein sequence manipulation tools. BioWord is distributed as a single macro-enabled template that self-installs with a single click. After installation, BioWord will open as a tab in the Office ribbon. Biologists can then easily manipulate DNA and protein sequences using a familiar interface and minimize the need to switch between applications. Beyond simple sequence manipulation, BioWord integrates functionality ranging from dyad search and consensus logos to motif discovery and pair-wise alignment. Written in Visual Basic for Applications (VBA) as an open source, object-oriented project, BioWord allows users with varying programming experience to expand and customize the program to better meet their own needs. BioWord integrates a powerful set of tools for biological sequence manipulation within a handy, user-friendly tab in a widely used word processing software package. The use of a simple scripting language and an object-oriented scheme facilitates customization by users and provides a very accessible educational platform for introducing students to basic bioinformatics algorithms.

Visualizing molecular profiles of glioblastoma with GBM-BioDP.

Directory of Open Access Journals (Sweden)

Orieta Celiku

Full Text Available Validation of clinical biomarkers and response to therapy is a challenging topic in cancer research. An important source of information for virtual validation is the datasets generated from multi-center cancer research projects such as The Cancer Genome Atlas project (TCGA. These data enable investigation of genetic and epigenetic changes responsible for cancer onset and progression, response to cancer therapies, and discovery of the molecular profiles of various cancers. However, these analyses often require bulk download of data and substantial bioinformatics expertise, which can be intimidating for investigators. Here, we report on the development of a new resource available to scientists: a data base called Glioblastoma Bio Discovery Portal (GBM-BioDP. GBM-BioDP is a free web-accessible resource that hosts a subset of the glioblastoma TCGA data and enables an intuitive query and interactive display of the resultant data. This resource provides visualization tools for the exploration of gene, miRNA, and protein expression, differential expression within the subtypes of GBM, and potential associations with clinical outcome, which are useful for virtual biological validation. The tool may also enable generation of hypotheses on how therapies impact GBM molecular profiles, which can help in personalization of treatment for optimal outcome. The resource can be accessed freely at http://gbm-biodp.nci.nih.gov (a tutorial is included.

Optics and Fluid Dynamics Department. Annual progress report for 2001

International Nuclear Information System (INIS)

Bindslev, H.; Hanson, S.G.; Lynov, J.P.; Petersen, P.M.; Skaarup, B.

2002-03-01

The Optics and Fluid Dynamics Department performs basic and applied research within three scientific programmes: 1) laser systems and optical materials, 2) optical diagnostics and information processing and 3) plasma and fluid dynamics. The department has core competence in: optical sensors, optical materials, optical storage, bio-optics, numerical modelling and information processing, non-linear dynamics and fusion plasma physics. The research is supported by several EU programmes, including EURATOM, by Danish research councils and by industry. A summary of the activities in 2001 is presented. (au)

tmBioC: improving interoperability of text-mining tools with BioC.

Science.gov (United States)

Khare, Ritu; Wei, Chih-Hsuan; Mao, Yuqing; Leaman, Robert; Lu, Zhiyong

2014-01-01

The lack of interoperability among biomedical text-mining tools is a major bottleneck in creating more complex applications. Despite the availability of numerous methods and techniques for various text-mining tasks, combining different tools requires substantial efforts and time owing to heterogeneity and variety in data formats. In response, BioC is a recent proposal that offers a minimalistic approach to tool interoperability by stipulating minimal changes to existing tools and applications. BioC is a family of XML formats that define how to present text documents and annotations, and also provides easy-to-use functions to read/write documents in the BioC format. In this study, we introduce our text-mining toolkit, which is designed to perform several challenging and significant tasks in the biomedical domain, and repackage the toolkit into BioC to enhance its interoperability. Our toolkit consists of six state-of-the-art tools for named-entity recognition, normalization and annotation (PubTator) of genes (GenNorm), diseases (DNorm), mutations (tmVar), species (SR4GN) and chemicals (tmChem). Although developed within the same group, each tool is designed to process input articles and output annotations in a different format. We modify these tools and enable them to read/write data in the proposed BioC format. We find that, using the BioC family of formats and functions, only minimal changes were required to build the newer versions of the tools. The resulting BioC wrapped toolkit, which we have named tmBioC, consists of our tools in BioC, an annotated full-text corpus in BioC, and a format detection and conversion tool. Furthermore, through participation in the 2013 BioCreative IV Interoperability Track, we empirically demonstrate that the tools in tmBioC can be more efficiently integrated with each other as well as with external tools: Our experimental results show that using BioC reduces >60% in lines of code for text-mining tool integration. The tmBioC toolkit

Bio-Inspired Sustainability Assessment for Building Product Development—Concept and Case Study

Directory of Open Access Journals (Sweden)

Rafael Horn

2018-01-01

Full Text Available Technological advancement culminating in a globalized economy has brought tremendous improvements for mankind in manifold respects but comes at the cost of alienation from nature. Human activities nowadays are unsustainable and cause severe damage especially in terms of global depletion and destabilization of natural systems but also harm its own social resources. In this paper, a sustainability assessment method is developed based on a bio-inspired sustainability framework that has been developed in the project TRR 141-C01 “The biomimetic promise.” It is aims at regaining the advantages of societal embeddedness in its environment through biological inspiration. The method is developed using a structured approach including requirement specification, description of the inventory models on bio-inspiration and sustainability assessment, creation of a bio-inspired sustainability assessment model and its validation. It is defined as an accompanying assessment for decision support, using a six-fold two-dimensional structure of social, economic and environmental functions and burdens. The method is applied and validated in 6 projects of TRR 141 and its applicability is exemplarily shown by the assessment of “Bio-flexi”, a biobased and biodegradable natural fiber reinforced plastic composite for indoor cladding applications. Based on the findings of the application the assessment method itself is proposed to be advanced towards an adaptive structure and a consequent outlook is provided.

Project BioEYES: Accessible Student-Driven Science for K-12 Students and Teachers.

Science.gov (United States)

Shuda, Jamie R; Butler, Valerie G; Vary, Robert; Farber, Steven A

2016-11-01

BioEYES, a nonprofit outreach program using zebrafish to excite and educate K-12 students about science and how to think and act like scientists, has been integrated into hundreds of under-resourced schools since 2002. During the week-long experiments, students raise zebrafish embryos to learn principles of development and genetics. We have analyzed 19,463 participating students' pre- and post-tests within the program to examine their learning growth and attitude changes towards science. We found that at all grade levels, BioEYES effectively increased students' content knowledge and produced favorable shifts in students' attitudes about science. These outcomes were especially pronounced in younger students. Having served over 100,000 students, we find that our method for providing student-centered experiences and developing long-term partnerships with teachers is essential for the growth and sustainability of outreach and school collaborations.

Center for BioBased Binders and Pollution Reduction Technology

Energy Technology Data Exchange (ETDEWEB)

Thiel, Jerry [Univ. of Northern Iowa, Cedar Falls, IA (United States)

2013-07-01

Funding will support the continuation of the Center for Advanced Bio-based Binders and Pollution Reduction Technology Center (CABB) in the development of bio-based polymers and emission reduction technologies for the metal casting industry. Since the formation of the center several new polymers based on agricultural materials have been developed. These new materials have show decreases in hazardous air pollutants, phenol and formaldehyde as much as 50 to 80% respectively. The polymers termed bio-polymers show a great potential to utilize current renewable agricultural resources to replace petroleum based products and reduce our dependence on importing of foreign oil. The agricultural technology has shown drastic reductions in the emission of hazardous air pollutants and volatile organic compounds and requires further development to maintain competitive costs and productivity. The project will also research new and improved inorganic binders that promise to eliminate hazardous emissions from foundry casting operations and allow for the beneficial reuse of the materials and avoiding the burdening of overcrowded landfills.

The roles of temperature and light in black band disease (BBD) progression on corals of the genus Diploria in Bermuda.

Science.gov (United States)

Kuehl, Kristin; Jones, Ross; Gibbs, David; Richardson, Laurie

2011-03-01

On Bermuda reefs the brain coral Diploria labyrinthiformis is rarely documented with black band disease (BBD), while BBD-affected colonies of Diploria strigosa are common. D. labyrinthiformis on these reefs may be more resistant to BBD or less affected by prevailing environmental conditions that potentially diminish host defenses. To determine whether light and/or temperature influence BBD differently on these two species, infection experiments were conducted under the following experimental treatments: (1) 26 °C, ambient light; (2) 30 °C, ambient light; (3) 30 °C, low light; and (4) 30 °C, high light. A digital photograph of the affected area of each coral was taken each day for 7 days and analyzed with ImageJ image processing software. The final affected area was not significantly different between species in any of the four treatments. BBD lesions were smaller on both species infected under ambient light at 26 °C versus 30 °C. Low light at 30 °C significantly reduced the lesion size on both species when compared to colonies infected at the same temperature under ambient light. Under high light at 30 °C, BBD lesions were larger on colonies of D. strigosa and smaller on colonies of D. labyrinthiformis when compared to colonies infected under ambient light at the same temperature. The responses of both species suggests that BBD progression on both D. strigosa and D. labyrinthiformis is similarly influenced by a combination of light and temperature and that other factors present before infections become established likely contribute to the difference in BBD prevalence in Bermuda. Copyright © 2010 Elsevier Inc. All rights reserved.

Bio fertilizer development incorporating nuclear technologies - Challenges and potentials to the industry

International Nuclear Information System (INIS)

Khairuddin Abdul Rahim; Phua, Choo Kwai Hoe; Ahmad Nazrul Abdul Wahid; Pauline, Liew Woan Ying; Ahamad Sahali Mardi; Mat Rasol Awang

2010-01-01

The development of bio fertilizer products, which involve incorporation of known microorganisms with desired functions, requires sterilisation of the carriers or substrates. Conventional sterilisation method using heat treatment or autoclaving has its limitations, especially in mass production of bio fertilizers. The Forum for Nuclear Cooperation in Asia (FNCA) through its Bio fertilizer Project Group encourages the use of gamma irradiation for carrier sterilisation, capitalising on the quality of the final products following proper sterilisation. Gamma irradiation at doses of 30 to 50 kGy was found suitable for sterilisation, depending on the carrier materials. More deliberation is needed for bio fertilizer companies far away from the gamma irradiation facilities to utilise gamma irradiation services for their bio fertilizer carriers, on aspects of cost of transportation, sterilisation, storage and convenience of use. Evaluation of bio fertilizer products on crops in the field need to be conducted to assess their efficacy. Several isotope-aided trials have been conducted to evaluate nutrient use efficiency of several formulations of Nuclear Malaysia bio fertilizer products, involving vegetable and herbal crops, with varying results. The paper highlights trials in Nuclear Malaysia and Cameron Highlands. Presently, product evaluation is limited to use of the stable isotope, nitrogen-15, in particular when considering radiation safety in field trials. Having joint trials involving potential end users is still a challenge. (author)

Bio-oil fractionation and condensation

Science.gov (United States)

Brown, Robert C; Jones, Samuel T; Pollard, Anthony

2013-07-02

A method of fractionating bio-oil vapors which involves providing bio-oil vapors comprising bio-oil constituents is described. The bio-oil vapors are cooled in a first stage which comprises a condenser having passages for the bio-oil separated by a heat conducting wall from passages for a coolant. The coolant in the condenser of the first stage is maintained at a substantially constant temperature, set at a temperature in the range of 75 to 100.degree. C., to condense a first liquid fraction of liquefied bio-oil constituents in the condenser of the first stage. The first liquid fraction of liquified bio-oil constituents from the condenser in the first stage is collected. Also described are steps for subsequently recovering further liquid fractions of liquefied bio-oil constituents. Particular compositions of bio-oil condensation products are also described.

Combinatorial Nano-Bio Interfaces.

Science.gov (United States)

Cai, Pingqiang; Zhang, Xiaoqian; Wang, Ming; Wu, Yun-Long; Chen, Xiaodong

2018-06-08

Nano-bio interfaces are emerging from the convergence of engineered nanomaterials and biological entities. Despite rapid growth, clinical translation of biomedical nanomaterials is heavily compromised by the lack of comprehensive understanding of biophysicochemical interactions at nano-bio interfaces. In the past decade, a few investigations have adopted a combinatorial approach toward decoding nano-bio interfaces. Combinatorial nano-bio interfaces comprise the design of nanocombinatorial libraries and high-throughput bioevaluation. In this Perspective, we address challenges in combinatorial nano-bio interfaces and call for multiparametric nanocombinatorics (composition, morphology, mechanics, surface chemistry), multiscale bioevaluation (biomolecules, organelles, cells, tissues/organs), and the recruitment of computational modeling and artificial intelligence. Leveraging combinatorial nano-bio interfaces will shed light on precision nanomedicine and its potential applications.

BioMeeT. Planning of biomass based methanol energy combine - Trollhaettan region. Final report

Energy Technology Data Exchange (ETDEWEB)

Brandberg, Aake; Hjortsberg, Hans; Saevbark, Bengt [Ecotraffic R and D AB, Stockholm (Sweden); Ekbom, Tomas; Hjerpe, Carl-Johan; Landaelv, Ingvar [Nykomb Synergetics AB, Stockholm (Sweden)

2000-04-01

The conversion of biomass in an energy combine based on primary gasification yields a gas that can be used as fuels gas, for synthesis of motor fuels (methanol or other) or for electric power production. The study gives examples of alternative product mixes. The conclusions of the study are: (1) Potential of new, not yet utilised biomass is available, and new areas of applications, where oil is presently used, are needed to develop the potential. Motor fuel production (methanol, DME) is a presumption in the BioMeeT-study. (2) Yield figures in the energy combine are comparable to those of now used bio-systems for power and co-generation. (3) Which one of the cases in the BioMeeT-project is the most favourable cannot be decided on a plant-to-plant basis alone but the entire system for supply energy carriers in the region has to be considered, as the all plants within the system may change. This would require further investigations. Moreover, the results will be different in various regions in Sweden and Europe due to the markets for all energy carriers. (4) At today's conditions in the Trollhaettan region it must be stated that there is only room for dedicated bio-methanol/DME production (provided such a market will come) with moderate addition to the district heating system as in the BAL-project. (5) In the longer term the future supply of all energy carriers, including new electric power and new bio-fuels, has to be considered for new plants and at renewals. In such a case an energy combine as in the BioMeeT-project may be a central conversion plant with gas deliveries to satellites such as local co-generation, district heat and industries in a regional system within a 50 - 100 km radius. This should be included in regional planning for the future. (6) Estimated investment costs per kW feedstock input is higher for the energy combine compared to present technologies (mature technologies for power and heat) but have to be judged for all plants taken together in

BioMeeT. Planning of biomass based methanol energy combine - Trollhaettan region. Final report

Energy Technology Data Exchange (ETDEWEB)

Brandberg, Aake; Hjortsberg, Hans; Saevbark, Bengt [Ecotraffic R and D AB, Stockholm (Sweden); Ekbom, Tomas; Hjerpe, Carl-Johan; Landaelv, Ingvar [Nykomb Synergetics AB, Stockholm (Sweden)

2000-04-01

The conversion of biomass in an energy combine based on primary gasification yields a gas that can be used as fuels gas, for synthesis of motor fuels (methanol or other) or for electric power production. The study gives examples of alternative product mixes. The conclusions of the study are: (1) Potential of new, not yet utilised biomass is available, and new areas of applications, where oil is presently used, are needed to develop the potential. Motor fuel production (methanol, DME) is a presumption in the BioMeeT-study. (2) Yield figures in the energy combine are comparable to those of now used bio-systems for power and co-generation. (3) Which one of the cases in the BioMeeT-project is the most favourable cannot be decided on a plant-to-plant basis alone but the entire system for supply energy carriers in the region has to be considered, as the all plants within the system may change. This would require further investigations. Moreover, the results will be different in various regions in Sweden and Europe due to the markets for all energy carriers. (4) At today's conditions in the Trollhaettan region it must be stated that there is only room for dedicated bio-methanol/DME production (provided such a market will come) with moderate addition to the district heating system as in the BAL-project. (5) In the longer term the future supply of all energy carriers, including new electric power and new bio-fuels, has to be considered for new plants and at renewals. In such a case an energy combine as in the BioMeeT-project may be a central conversion plant with gas deliveries to satellites such as local co-generation, district heat and industries in a regional system within a 50 - 100 km radius. This should be included in regional planning for the future. (6) Estimated investment costs per kW feedstock input is higher for the energy combine compared to present technologies (mature technologies for power and heat) but have to be judged for all plants taken together in the

Ultra-bright emission from hexagonal boron nitride defects as a new platform for bio-imaging and bio-labelling

Science.gov (United States)

Elbadawi, Christopher; Tran, Trong Toan; Shimoni, Olga; Totonjian, Daniel; Lobo, Charlene J.; Grosso, Gabriele; Moon, Hyowan; Englund, Dirk R.; Ford, Michael J.; Aharonovich, Igor; Toth, Milos

2016-12-01

Bio-imaging requires robust ultra-bright probes without causing any toxicity to the cellular environment, maintain their stability and are chemically inert. In this work we present hexagonal boron nitride (hBN) nanoflakes which exhibit narrowband ultra-bright single photon emitters1. The emitters are optically stable at room temperature and under ambient environment. hBN has also been noted to be noncytotoxic and seen significant advances in functionalization with biomolecules2,3. We further demonstrate two methods of engineering this new range of extremely robust multicolour emitters across the visible and near infrared spectral ranges for large scale sensing and biolabeling applications.

Micro benchtop optics by bulk silicon micromachining

Science.gov (United States)

Lee, Abraham P.; Pocha, Michael D.; McConaghy, Charles F.; Deri, Robert J.

2000-01-01

Micromachining of bulk silicon utilizing the parallel etching characteristics of bulk silicon and integrating the parallel etch planes of silicon with silicon wafer bonding and impurity doping, enables the fabrication of on-chip optics with in situ aligned etched grooves for optical fibers, micro-lenses, photodiodes, and laser diodes. Other optical components that can be microfabricated and integrated include semi-transparent beam splitters, micro-optical scanners, pinholes, optical gratings, micro-optical filters, etc. Micromachining of bulk silicon utilizing the parallel etching characteristics thereof can be utilized to develop miniaturization of bio-instrumentation such as wavelength monitoring by fluorescence spectrometers, and other miniaturized optical systems such as Fabry-Perot interferometry for filtering of wavelengths, tunable cavity lasers, micro-holography modules, and wavelength splitters for optical communication systems.

2010 World bio-energy conference

International Nuclear Information System (INIS)

2010-01-01

After having evoked the bio-energy price awarded to a Brazilian for his works on the use of eucalyptus as energy source, this report proposes a synthesis of the highlights of the conference: discussions about sustainability, bio-energies as an opportunity for developing countries, the success of bio-energies in Sweden, and more particularly some technological advances in the field of biofuels: a bio-LPG by Biofuel-solution AB, catalysis, bio-diesel from different products in a Swedish farm, a second generation ethanol by the Danish company Inbicon, a large scale methanization in Goteborg, a bio-refinery concept in Sweden, bio-gases

Development of Optical Molecular Imaging System for the Acquisition of Bioluminescence Signals from Small Animals

International Nuclear Information System (INIS)

Lee, Byeong Il; Kim, Hyeon Sik; Jeong, Hye Jin; Lee, Hyung Jae; Moon, Seung Min; Kwon, Seung Young; Jeong, Shin Young; Bom, Hee Seung; Min, Jung Joon; Choi, Eun Seo

2009-01-01

Optical imaging is providing great advance and improvement in genetic and molecular imaging of animals and humans. Optical imaging system consists of optical imaging devices, which carry out major function for monitoring, tracing, and imaging in most of molecular in-vivo researches. In bio-luminescent imaging, small animals containing luciferase gene locally irradiate light, and emitted photons transmitted through skin of the small animals are imaged by using a high sensitive charged coupled device (CCD) camera. In this paper, we introduced optical imaging system for the image acquisition of bio-luminescent signals emitted from small animals. In the system, Nikon lens and four LED light sources were mounted at the inside of a dark box. A cooled CCD camera equipped with a control module was used. We tested the performance of the optical imaging system using effendorf tube and light emitting bacteria which injected intravenously into CT26 tumor bearing nude mouse. The performance of implemented optical imaging system for bio-luminescence imaging was demonstrated and the feasibility of the system in small animal imaging application was proved. We anticipate this system could be a useful tool for the molecular imaging of small animals adaptable for various experimental conditions in future

Detailed Vascular Anatomy of the Human Retina by Projection-Resolved Optical Coherence Tomography Angiography

Science.gov (United States)

Campbell, J. P.; Zhang, M.; Hwang, T. S.; Bailey, S. T.; Wilson, D. J.; Jia, Y.; Huang, D.

2017-02-01

Optical coherence tomography angiography (OCTA) is a noninvasive method of 3D imaging of the retinal and choroidal circulations. However, vascular depth discrimination is limited by superficial vessels projecting flow signal artifact onto deeper layers. The projection-resolved (PR) OCTA algorithm improves depth resolution by removing projection artifact while retaining in-situ flow signal from real blood vessels in deeper layers. This novel technology allowed us to study the normal retinal vasculature in vivo with better depth resolution than previously possible. Our investigation in normal human volunteers revealed the presence of 2 to 4 distinct vascular plexuses in the retina, depending on location relative to the optic disc and fovea. The vascular pattern in these retinal plexuses and interconnecting layers are consistent with previous histologic studies. Based on these data, we propose an improved system of nomenclature and segmentation boundaries for detailed 3-dimensional retinal vascular anatomy by OCTA. This could serve as a basis for future investigation of both normal retinal anatomy, as well as vascular malformations, nonperfusion, and neovascularization.

Market development problems for sustainable bio-energy systems in Sweden. (The BIOMARK project)

Energy Technology Data Exchange (ETDEWEB)

Helby, Peter (ed.); Boerjesson, Paal; Hansen, Anders Christian; Roos, Anders; Rosenqvist, Haakan; Takeuchi, Linn

2003-03-01

The report consists of three case studies relating to Swedish bio-energy markets. The first is concerned with a general analysis of costs and benefits of transition to biomass-based electricity in Sweden. The analysis indicates that many price relations in Sweden do not support the transition to bio-energy. Future prospects for biomass conversion technologies versus natural gas based technologies may not be in favour of bio-energy with the existing fuel prices. Additionally, there is no effective utilisation of the large economic benefits that could be gained by coordinating the bio-energy fuel chain with the management of other material flows such as the nutrient flows in the water cycle. In government policies, the supply of biomass does not seem to receive the same attention as the conversion technologies. Potentially, this could lead to a shortage of biomass feedstock when the conversion technology part of the programmes succeeds. The second study is about market development for energy crops, specifically Salix. The analysis shows that real-life development is far behind prognoses and scenarios, confirming worries about future supplies of biomass. While Salix is associated with significant positive externalities and provides a large potential for co-benefits, the institutional setting is not favourable for the exploitation of these advantages. A particular problem is the high risk farmers face when planting Salix, as future demand is uncertain and prices difficult to predict. A better distribution of risk among the market actors, particularly between farmers and district heating companies, might be the best strategy for renewed growth in this sector. The third study is concerned with the wood pellets market, which experienced a supply crisis in the winter 2001/02, as producers were unable to satisfy demand or did so only at highly elevated prices. The analysis points to weakness in market governance, especially insufficient information flows between actors

Market development problems for sustainable bio-energy systems in Sweden. (The BIOMARK project)

International Nuclear Information System (INIS)

Helby, Peter; Boerjesson, Paal; Hansen, Anders Christian; Roos, Anders; Rosenqvist, Haakan; Takeuchi, Linn

2003-03-01

The report consists of three case studies relating to Swedish bio-energy markets. The first is concerned with a general analysis of costs and benefits of transition to biomass-based electricity in Sweden. The analysis indicates that many price relations in Sweden do not support the transition to bio-energy. Future prospects for biomass conversion technologies versus natural gas based technologies may not be in favour of bio-energy with the existing fuel prices. Additionally, there is no effective utilisation of the large economic benefits that could be gained by coordinating the bio-energy fuel chain with the management of other material flows such as the nutrient flows in the water cycle. In government policies, the supply of biomass does not seem to receive the same attention as the conversion technologies. Potentially, this could lead to a shortage of biomass feedstock when the conversion technology part of the programmes succeeds. The second study is about market development for energy crops, specifically Salix. The analysis shows that real-life development is far behind prognoses and scenarios, confirming worries about future supplies of biomass. While Salix is associated with significant positive externalities and provides a large potential for co-benefits, the institutional setting is not favourable for the exploitation of these advantages. A particular problem is the high risk farmers face when planting Salix, as future demand is uncertain and prices difficult to predict. A better distribution of risk among the market actors, particularly between farmers and district heating companies, might be the best strategy for renewed growth in this sector. The third study is concerned with the wood pellets market, which experienced a supply crisis in the winter 2001/02, as producers were unable to satisfy demand or did so only at highly elevated prices. The analysis points to weakness in market governance, especially insufficient information flows between actors

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation. Volume 2; Revised

Science.gov (United States)

Mueller, James L. (Editor); Fargion, Giulietta S. (Editor); Trees, C.; Austin, R. W.; Pietras, C. (Editor); Hooker, S.; Holben, B.; McClain, Charles R.; Clark, D. K.; Yuen, M.

2002-01-01

This document stipulates protocols for measuring bio-optical and radiometric data for the SIMBIOS Project. It supersedes the earlier version, and is organized into four parts: Introductory Background, Instrument Characteristics, Field Measurements and Data Analysis, Data Reporting and Archival. Changes in this revision include the addition of three new chapters: (1) Fundamental Definitions, Relationships and Conventions; (2) MOBY, A Radiometric Buoy for Performance Monitoring and Vicarious Calibration of Satellite Ocean Color Sensors: Measurement and Data Analysis Protocols; and (3) Normalized Water-Leaving Radiance and Remote Sensing Reflectance: Bidirectional Reflectance and Other Factors. Although the present document represents another significant, incremental improvement in the ocean optics protocols, there are several protocols that have either been overtaken by recent technological progress, or have been otherwise identified as inadequate. Revision 4 is scheduled for completion sometime in 2003. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational Project. The contributions are published as submitted, after only minor editing to correct obvious grammatical or clerical errors.

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation. Volume 1; Revised

Science.gov (United States)

Mueller, James L. (Editor); Fargion, Giulietta (Editor); Mueller, J. L.; Trees, C.; Austin, R. W.; Pietras, C.; Hooker, S.; Holben, B.; McClain, Charles R.; Clark, D. K.;

Biologically active compounds to develop bioelectronics and bio photonics

Science.gov (United States)

Mishra, Ashok Kumar; Tiwari, Satya Prakash

2018-05-01

Recent reports on biomaterials and biological systems at nano scale provide researchers with a fertile ground with regard to materials, enabling bioelectronics, bio sensing and new nanotechnologies that cover a wide range of applications. The signal transductions have been reported for many biological phenomenons and new field of biophysics namely Biosensors and Bioelectronics have been emerged out. The advances in the study of various aspects of bio molecules like electrical, optical, thermal etc has established the interesting area of research like biophotonics, nanobiotechnology, molecular solid, molecular liquids, bio instrumentation etc. The present study discusses the some aspects and applications of the bioprocess yields nanostructures that are nearly flawless in composition, stereo specific in structure, and flexible. Furthermore, these biomaterials are environment friendly because they are biodegradable in nature. Biological compounds are self assembled into complex nanostructures and behave like a system possessing long range hierarchical nanoscale order. In addition, chemical modification and genetic engineering can be used to modify bio materials to enhance a specific property. Various biomaterials have been reported which allow nanostructure control for nano photonic applications. The dielectric and conduction properties of the bio molecules have been the subject of many investigations. As a result, there exist a wealth of valuable information on the charge transport and rotational properties of many bio molecules. Amino acids and proteins, nucleic acids, lipids, cell and tissues have been characterized over a wide frequency spectrum ranging from a few hertz to Giga hertz. In certain cases, dielectric measurements have been exploited to probe the physical changes taking place in biologically important structures, for example, in lipid phase transition process in membrane. The phase transition in membrane may be analyzed by applying the theory for

RECURF project : bio-composieten op basis van textielresten, unieke eigenschappen, belevingswaarde en recyclebaarheid

NARCIS (Netherlands)

de Jong, Matthijs; Oskam, Inge; Lepelaar, Mark

2017-01-01

Er zijn nieuwe materialen gecreëerd door textielresten te mengen met bio-based plastics en deze te bewerken m.b.v. digitale productietechnieken. De nieuwe materialen hebben goede mechanische en functionele eigenschappen, alsmede een hoge belevingswaarde . Tevens zijn de nieuwe materialen biologisch

Enhancing thermal reliability of fiber-optic sensors for bio-inspired applications at ultra-high temperatures

Science.gov (United States)

Kang, Donghoon; Kim, Heon-Young; Kim, Dae-Hyun

2014-07-01

The rapid growth of bio-(inspired) sensors has led to an improvement in modern healthcare and human-robot systems in recent years. Higher levels of reliability and better flexibility, essential features of these sensors, are very much required in many application fields (e.g. applications at ultra-high temperatures). Fiber-optic sensors, and fiber Bragg grating (FBG) sensors in particular, are being widely studied as suitable sensors for improved structural health monitoring (SHM) due to their many merits. To enhance the thermal reliability of FBG sensors, thermal sensitivity, generally expressed as αf + ξf and considered a constant, should be investigated more precisely. For this purpose, the governing equation of FBG sensors is modified using differential derivatives between the wavelength shift and the temperature change in this study. Through a thermal test ranging from RT to 900 °C, the thermal sensitivity of FBG sensors is successfully examined and this guarantees thermal reliability of FBG sensors at ultra-high temperatures. In detail, αf + ξf has a non-linear dependence on temperature and varies from 6.0 × 10-6 °C-1 (20 °C) to 10.6 × 10-6 °C-1 (650 °C). Also, FBGs should be carefully used for applications at ultra-high temperatures due to signal disappearance near 900 °C.

BIO ARGO floats: tools for operational monitoring of the Black Sea

Science.gov (United States)

Palazov, Atanas; Slabakova, Violeta; Peneva, Elisaveta; Stanev, Emil

2014-05-01

The assessment of ecological status in the context of the Water Framework Directive (WFD) and Marine Strategy Framework Directive (MSFD) requires comprehensive knowledge and understanding of the physical and biogeochemical processes that determine the functioning of marine ecosystems. One of the main challenges however is the need of data with frequency relevant to the spatial and temporal scales of the ecological processes. The majority of in situ observations that are commonly used for ecological monitoring of the Black Sea are generally based on near-shore monitoring programs or irregular oceanographic cruises that provide either non-synoptic, coarse resolution realizations of large scale processes or detailed, but time and site specific snapshots of local features. These gaps can be filled by two independent sources: satellite observation and profiling floats. In fact satellite ocean color sensors allows for determination at synoptic scale of water quality parameters through its absorption properties. However the satellite ocean color methods have a number of limitations such as: measurements can only be made during daylight hours; require cloud-free conditions and are sensitive to atmospheric aerosols; provide information only for the upper layer of the ocean (approximately the depth of 10% incident light); algorithms developed for global applications are a source of large uncertainties in the marginal seas and costal areas. These constrains of the optical remote sensing observations can be avoided by using miniature biogeochemical sensors and autonomous platforms that offer remarkable perspectives for observing the "biological" ocean, notably at critical spatiotemporal scales which have been out of reach until recently (Claustre et al., 2010). In the frame of "E-AIMS: Euro-Argo Improvements for the GMES marine Service" 7 EC FP project two Bio Argo floats were deployed in the Black Sea. Beside the traditionally CTD the floats were equipped with biogeochemical

The mechanism of the photoluminescence changes in bio-conjugated CdSe/ZnS quantum dots

Science.gov (United States)

Borkovska, L.; Korsunska, N.; Stara, T.; Kolomys, O.; Strelchuk, V.; Rachkov, O.; Kryshtab, T.

2013-09-01

The change of the photoluminescence (PL) and optical characteristics in non-conjugated and conjugated with S6K2 antibody CdSe/ZnS core/shell quantum dots (QDs) during storage in air has been studied by the conventional PL, micro-PL and micro-Raman techniques. The QDs dried on a crystalline Si substrate were kept in the darkness and under illumination. In the PL spectra, the storage resulted in a blue shift of PL peak position, in the increasing of the full width at a half maximum (FWHM) of the PL band and in the decreasing of the PL intensity. In the Raman spectra, the shift of the CdSe LO peak position to the low frequency region and the increasing of its FWHM were observed. The transformations in the PL and optical characteristics correlate with each other and are found to be the largest in bio-conjugated QDs stored under illumination. The increase of the light intensity accelerated the changes occurred during storage. An oxidation of the QD core, which decreases the QD size, is supposed to be responsible for observed transformations. The bio-conjugation is assumed to promote QD oxidation that results in different PL peak position in stored non-conjugated and bio-conjugated QDs. The mechanism of the effect is discussed.

OPTiM: Optical projection tomography integrated microscope using open-source hardware and software.

Science.gov (United States)

Watson, Thomas; Andrews, Natalie; Davis, Samuel; Bugeon, Laurence; Dallman, Margaret D; McGinty, James

2017-01-01

We describe the implementation of an OPT plate to perform optical projection tomography (OPT) on a commercial wide-field inverted microscope, using our open-source hardware and software. The OPT plate includes a tilt adjustment for alignment and a stepper motor for sample rotation as required by standard projection tomography. Depending on magnification requirements, three methods of performing OPT are detailed using this adaptor plate: a conventional direct OPT method requiring only the addition of a limiting aperture behind the objective lens; an external optical-relay method allowing conventional OPT to be performed at magnifications >4x; a remote focal scanning and region-of-interest method for improved spatial resolution OPT (up to ~1.6 μm). All three methods use the microscope's existing incoherent light source (i.e. arc-lamp) and all of its inherent functionality is maintained for day-to-day use. OPT acquisitions are performed on in vivo zebrafish embryos to demonstrate the implementations' viability.

Design and assembly of the optical modules for phase-2 of the NEMO project

Energy Technology Data Exchange (ETDEWEB)

Leonora, E., E-mail: emanuele.leonora@ct.infn.it; Aiello, S.

2013-10-11

The NEMO collaboration team has undertaken a Phase-2 project, which aims at the realization and installation of a new infrastructure at the Capo Passero (Italy) deep-sea site at a depth of 3500 m. With this objective in mind, a fully equipped tower with 8-storey hosting two optical modules at each end is under construction. Following a well established procedure, 32 optical modules have been assembled. The optical module consists of a large area photomultiplier tube enclosed in a pressure resistant glass sphere with a diameter of 13 in. The photomultiplier is a R7081 type, produced by Hamamatsu, with a photocathode area with a diameter of 10 in. and 10 dynodes. Mechanical and optical contacts between the front of the photomultiplier tube and the glass surface are ensured by an optical bi-component silicone gel. A mu-metal cage is used to shield the photomultiplier against the influence of the Earth's magnetic field.

Experimental and theoretical study on spray behaviors of modified bio-ethanol fuel employing direct injection system

Directory of Open Access Journals (Sweden)

Ghahremani Amirreza

2017-01-01

Full Text Available One of the key solutions to improve engine performance and reduce exhaust emissions of internal combustion engines is direct injection of bio-fuels. A new modified bio-ethanol is produced to be substituted by fossil fuels in gasoline direct injection engines. The key advantages of modified bio-ethanol fuel as an alternative fuel are higher octane number and oxygen content, a long-chain hydro-carbon fuel, and lower emissions compared to fossil fuels. In the present study spray properties of a modified bio-ethanol and its atomization behaviors have been studied experimentally and theoretically. Based on atomization physics of droplets dimensional analysis has been performed to develop a new non-dimensional number namely atomization index. This number determines the atomization level of the spray. Applying quasi-steady jet theory, air entrainment and fuel-air mixing studies have been performed. The spray atomization behaviors such as atomization index number, Ohnesorge number, and Sauter mean diameter have been investigated employing atomization model. The influences of injection and ambient conditions on spray properties of different blends of modified bio-ethanol and gasoline fuels have been investigated performing high-speed visualization technique. Results indicate that decreasing the difference of injection and ambient pressures increases spray cone angle and projected area, and decreases spray tip penetration length. As expected, increasing injection pressure improves atomization behaviors of the spray. Increasing percentage of modified bio-ethanol in the blend, increases spray tip penetration and decreases the projected area as well.

Progress in surface plasmon subwavelength optics

International Nuclear Information System (INIS)

Zhang Douguo; Wang Pei; Jiao Xiaojin; Tang Lin; Lu Yonghua; Ming Hai

2005-01-01

Now great attention is being paid to the potential applications of surface plasmon polaritons (SPPs) in data storage, light generation, microscopy and bio-photonics. The authors review the properties of SPPs and topics of recent interest in surface plasmon subwavelength optics. (author)

Bio-oil and bio-char production from biomass and their structural analyses

International Nuclear Information System (INIS)

Kilic, Murat; Özsin, Gamzenur; Pütün, Ayşe E.; Pütün, Ersan

2015-01-01

Energy demand is increasing day by day because of the rapid developments in the population, industrialization and urbanisation. Since, fossil fuels will be at the verge of getting extinct, researches are mostly focused on the renewable sources, such as biomass, in recent years. This paper provides an environmentally friendly process to convert waste biomass samples to bio-oil and bio-char by pyrolysis. For this purpose, pyrolysis characteristics of pomegranate peels under inert atmosphere were studied by using both TGA to analysis decomposition behaviour and a batch reactor to investigate product yields and properties. The properties of bio-oil and bio-char were investigated by different analytical techniques such as GC-MS, FT-IR, SEM, He pycnometry and elemental analysis. As a consequence, it is possible to obtain bio-oil, which has similar properties like petroleum hydrocarbons, and to obtain bio-char, which can be further used as a solid fuel or a carbonaceous adsorbent material via pyrolysis process. (full text)

Optical rectification, circular photogalvanic effect, and five-wave mixing in optically active liquids

Science.gov (United States)

Koroteev, Nikolai I.

1996-05-01

A phenomenological analysis is carried out of novel nonlinear optical processes taking place in macroscopically noncentrosymmetric isotropic solutions of chiral (lift-ring mirror asymmetric) macromolecules, which are the primary elements of living organisms and their metabolic products. Among the most interesting and potentially useful for spectroscopic purposes are: optical rectification/photogalvanic effects consisting in electrostatic field/direct electrical current generation in such liquids under irradiation with the intense circularly polarized laser beam and the five-wave mixing phase-matched process of BioCARS to selectively record, background-free, vibrational spectra of chiral molecules.

Mechanical Behavior of Polymer Nano Bio Composite for Orthopedic Implants

Science.gov (United States)

Marimuthu, K., Dr.; Rajan, Sankar

2018-04-01

The bio-based polymer composites have been the focus of many scientific and research projects, as well as many commercial programs. In recent years, scientists and engineers have been working together to use the inherent strength and performance of the new class of bio-based composites which is compactable with human body and can act as a substitute for living cells. In this stage the polymer composites also stepped into human bone implants as a replacement for metallic implants which was problems like corrosion resistance and high cost. The polymer composite have the advantage that it can be molded to the required shape, the polymers have high corrosion resistance, less weight and low cost. The aim of this research is to develop and analyze the suitable bio compactable polymer composite for human implants. The nano particles reinforced polymer composites provides good mechanical properties and shows good tribological properties especially in the total hip and knee replacements. The graphene oxide powders are bio compactable and acts as anti biotic. GO nano powder where reinforced into High-density polyethylene in various weight percentage of 0.5% to 2%. The performance of GO nano powder shows better tribological properties. The material produced does not cause any pollution to the environment and at the same time it can be bio compactable and sustainable. The product will act environmentally friendly.

Evolving BioAssay Ontology (BAO): modularization, integration and applications.

Science.gov (United States)

Abeyruwan, Saminda; Vempati, Uma D; Küçük-McGinty, Hande; Visser, Ubbo; Koleti, Amar; Mir, Ahsan; Sakurai, Kunie; Chung, Caty; Bittker, Joshua A; Clemons, Paul A; Brudz, Steve; Siripala, Anosha; Morales, Arturo J; Romacker, Martin; Twomey, David; Bureeva, Svetlana; Lemmon, Vance; Schürer, Stephan C

2014-01-01

The lack of established standards to describe and annotate biological assays and screening outcomes in the domain of drug and chemical probe discovery is a severe limitation to utilize public and proprietary drug screening data to their maximum potential. We have created the BioAssay Ontology (BAO) project (http://bioassayontology.org) to develop common reference metadata terms and definitions required for describing relevant information of low-and high-throughput drug and probe screening assays and results. The main objectives of BAO are to enable effective integration, aggregation, retrieval, and analyses of drug screening data. Since we first released BAO on the BioPortal in 2010 we have considerably expanded and enhanced BAO and we have applied the ontology in several internal and external collaborative projects, for example the BioAssay Research Database (BARD). We describe the evolution of BAO with a design that enables modeling complex assays including profile and panel assays such as those in the Library of Integrated Network-based Cellular Signatures (LINCS). One of the critical questions in evolving BAO is the following: how can we provide a way to efficiently reuse and share among various research projects specific parts of our ontologies without violating the integrity of the ontology and without creating redundancies. This paper provides a comprehensive answer to this question with a description of a methodology for ontology modularization using a layered architecture. Our modularization approach defines several distinct BAO components and separates internal from external modules and domain-level from structural components. This approach facilitates the generation/extraction of derived ontologies (or perspectives) that can suit particular use cases or software applications. We describe the evolution of BAO related to its formal structures, engineering approaches, and content to enable modeling of complex assays and integration with other ontologies and

Bio-Inspired Design Approach Analysis: A Case Study of Antoni Gaudi and Santiago Calatrava

OpenAIRE

Marzieh Imani

2017-01-01

Antoni Gaudi and Santiago Calatrava have reputation for designing bio-inspired creative and technical buildings. Even though they have followed different independent approaches towards design, the source of bio-inspiration seems to be common. Taking a closer look at their projects reveals that Calatrava has been influenced by Gaudi in terms of interpreting nature and applying natural principles into the design process. This research firstly discusses the dialogue between Biomimicry and archit...

BioSIGHT: Interactive Visualization Modules for Science Education

Science.gov (United States)

Wong, Wee Ling

1998-01-01

Redefining science education to harness emerging integrated media technologies with innovative pedagogical goals represents a unique challenge. The Integrated Media Systems Center (IMSC) is the only engineering research center in the area of multimedia and creative technologies sponsored by the National Science Foundation. The research program at IMSC is focused on developing advanced technologies that address human-computer interfaces, database management, and high- speed network capabilities. The BioSIGHT project at IMSC is a demonstration technology project in the area of education that seeks to address how such emerging multimedia technologies can make an impact on science education. The scope of this project will help solidify NASA's commitment for the development of innovative educational resources that promotes science literacy for our students and the general population as well. These issues must be addressed as NASA marches towards the goal of enabling human space exploration that requires an understanding of life sciences in space. The IMSC BioSIGHT lab was established with the purpose of developing a novel methodology that will map a high school biology curriculum into a series of interactive visualization modules that can be easily incorporated into a space biology curriculum. Fundamental concepts in general biology must be mastered in order to allow a better understanding and application for space biology. Interactive visualization is a powerful component that can capture the students' imagination, facilitate their assimilation of complex ideas, and help them develop integrated views of biology. These modules will augment the role of the teacher and will establish the value of student-centered interactivity, both in an individual setting as well as in a collaborative learning environment. Students will be able to interact with the content material, explore new challenges, and perform virtual laboratory simulations. The BioSIGHT effort is truly cross

PLA/Bio-PE blends: effect of the Bio-PE content on the crystallinity rheological properties

International Nuclear Information System (INIS)

Araujo, Aylanna P.M. de; Agrawal, Pankaj; Cavalcanti, Shirley N.; Alves, Amanda M.; Melo, Tomas J.A. de; Brito, Gustavo F.

2014-01-01

The aim of this work is to evaluate the effect of the Bio-PE content on the crystallinity and rheological properties of PLA/Bio-PE blend. The blends containing 05 and 15% of Bio-PE were prepared by extrusion followed by injection molding and characterized by X-Ray Diffraction (XRD) and rheological properties at low and high shear rates. XRD results indicated that the PLA present low crystallinity and this behavior was not changed with the addition of Bio-PE, regardless of Bio-PE content. Rheological properties results indicated that at low shear rates the viscosity of the PLA/Bio-PE increased with the increase in the Bio-PE content while at high shear rates the viscosities where almost similar, which may be ascribed to the orientation of Bio-PE particles in the flow direction or by the viscous dissipation. (author)

History of optical theory of reflecting telescopes and implications for future projects

Science.gov (United States)

Wilson, Raymond N.

1997-03-01

This contribution, The History of Optical Theory of Reflecting Telescopes and Implications for Future Projects, is a shortened form of the Karl Schwarzschild lecture given in Bochum in September 1993. Some material has been added from an invited paper given in Padua in December 1992. For a full account, with figures and tables, the reader is referred to these two papers.

Bio-fuels barometer

International Nuclear Information System (INIS)

Anon.

2010-01-01

European Union bio-fuel use for transport reached 12 million tonnes of oil equivalent (mtoe) threshold during 2009. The slowdown in the growth of European consumption deepened again. Bio-fuel used in transport only grew by 18.7% between 2008 and 2009, as against 30.3% between 2007 and 2008 and 41.8% between 2006 and 2007. The bio-fuel incorporation rate in all fuels used by transport in the E.U. is unlikely to pass 4% in 2009. We can note that: -) the proportion of bio-fuel in the German fuels market has plummeted since 2007: from 7.3% in 2007 to 5.5% in 2009; -) France stays on course with an incorporation rate of 6.25% in 2009; -) In Spain the incorporation rate reached 3.4% in 2009 while it was 1.9% in 2008. The European bio-diesel industry has had another tough year. European production only rose by 16.6% in 2009 or by about 9 million tonnes which is well below the previous year-on-year growth rate recorded (35.7%). France is leading the production of bio-ethanol fuels in Europe with an output of 1250 million liters in 2009 while the total European production reached 3700 million litters and the world production 74000 million liters. (A.C.)

Assessing bio-available silver released from silver nanoparticles embedded in silica layers using the green algae Chlamydomonas reinhardtii as bio-sensors

Energy Technology Data Exchange (ETDEWEB)

Pugliara, Alessandro [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France); LAPLACE (LAboratoire PLAsma et Conversion d' Energie), Université de Toulouse, CNRS, UPS, INPT, 118 route de Narbonne, F-31062 Toulouse (France); Makasheva, Kremena; Despax, Bernard [LAPLACE (LAboratoire PLAsma et Conversion d' Energie), Université de Toulouse, CNRS, UPS, INPT, 118 route de Narbonne, F-31062 Toulouse (France); Bayle, Maxime; Carles, Robert; Benzo, Patrizio; BenAssayag, Gérard; Pécassou, Béatrice [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France); Sancho, Maria Carmen; Navarro, Enrique [IPE (Instituto Pirenaico de Ecología)-CSIC, Avda. Montañana 1005, Zaragoza 50059 (Spain); Echegoyen, Yolanda [I3A, Department of Analytical Chemistry, University of Zaragoza, C/ María de Luna 3, 50018, Zaragoza (Spain); Bonafos, Caroline, E-mail: bonafos@cemes.fr [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France)

2016-09-15

Silver nanoparticles (AgNPs) because of their strong antibacterial activity are widely used in health-care sector and industrial applications. Their huge surface-volume ratio enhances the silver release compared to the bulk material, leading to an increased toxicity for microorganisms sensitive to this element. This work presents an assessment of the toxic effect on algal photosynthesis due to small (size < 20 nm) AgNPs embedded in silica layers. Two physical approaches were originally used to elaborate the nanocomposite structures: (i) low energy ion beam synthesis and (ii) combined silver sputtering and plasma polymerization. These techniques allow elaboration of a single layer of AgNPs embedded in silica films at defined nanometer distances (from 0 to 7 nm) beneath the free surface. The structural and optical properties of the nanostructures were studied by transmission electron microscopy and optical reflectance. The silver release from the nanostructures after 20 h of immersion in buffered water was measured by inductively coupled plasma mass spectrometry and ranges between 0.02 and 0.49 μM. The short-term toxicity of Ag to photosynthesis of Chlamydomonas reinhardtii was assessed by fluorometry. The obtained results show that embedding AgNPs reduces the interactions with the buffered water free media, protecting the AgNPs from fast oxidation. The release of bio-available silver (impacting on the algal photosynthesis) is controlled by the depth at which AgNPs are located for a given host matrix. This provides a procedure to tailor the toxicity of nanocomposites containing AgNPs. - Highlights: • Controlled synthesis of 2D arrays of silver nanoparticles embedded in silica. • Assessing bio-available silver release using the green algae as bio-sensors. • The Ag release can be controlled by the distance nanoparticles/dielectric surface. • All the Ag released in solution is in the form of Ag{sup +} ions. • Toxicity comparable to similar concentrations of

Bio-Engineering Services to the Developmentally Disabled Adolescent. Final Report.

Science.gov (United States)

Mallik, Kalisankar; Yuspeh, Sheldon

A 1-year demonstration project involving 24 developmentally disabled students (9- to 20-years-old) with severe physical limitations was conducted to increase their educational and vocational possibilities by using cost-effective bio-engineering techniques to modify their physical environment and develop improved adaptive devices. Phase I of the…

Chemostratigraphy at DSDP Sites 386 (Bermuda Rise) and 144 (Demerara Rise), Implications for Euxinic Conditions During OAE-2

Science.gov (United States)

Horst, P. A.; Maurrasse, F. J.; Sinninghe-Damsté, J. S.; Sandler, A.

2008-05-01

). Biomarker data indicate that during OAE 2 similar paleoceanographic conditions prevailed at both DSDP Sites, 144 on the Demerara Rise and 386 on the Bermuda Rise. A. Forster, H. Sturt, P.A. Meyers, et al., in preliminary shipboard results from Sites 1257 and 1258, Leg 207, J. Erbacher, D.C. Mosher, M.J. Malone, et al., Proc. ODP, Init.Repts.207,1-22 [Online]: http://wwwodp.tamu.edu/publications/207_IR/VOLUME/ CHAPTERS/IR207_10.PDF. [Cited 2006-02-09] M.M.M. Kuypers, et al., Paleoceanography, 17, 4, 1051-1063 (2002) B.R.T. Simoneit, in Initial Reports of the Deep Sea Drilling Project, Vol. 43, Tucholke, B.E., Vogt, P.R., et al., 1979, Eds, Washington (U.S. Government Printing Office), pp. 643-650 (1979) B.R.T. Simoneit and D.H.Stuermer, in Cretaceous Oceans, S.O. Schlanger and M.B. Cita, Eds, Academic Press, New York, pp. 145-163 (1982)

Biosol Project: development of a new technology for the treatment of soils contaminated with hydrocarbons. bio-remediation by means of the addition of a biomass material (part one)

International Nuclear Information System (INIS)

2005-01-01

The general mission of the project is to contribute to the development of new technologies based on the bio-remediation of soils contaminated with hydrocarbons. It is pretended to develop a bio-remediation technology based on the use 'on site' of a biomass material with absorbent properties that allows to reduce time and costs of treatment of contaminated soils by hydrocarbons in comparison with other current technologies. The biomass must be biodegradable and to act as a bio-stimulator of the endogenous microbial population, which is the responsible of the degradation of the pollutants contained in the soil. Another objective to achieve is that the new technology has to be able to decontaminate soils over the maximum thresholds of concentration reached by similar technologies of bio-remediation (50.000 ppm), in order to obtain that the technique could be competitive in comparison with other techniques more conventional based on chemical or physical treatments, and more aggressive from an ecological point of view (for example: chemical oxidation, thermal desorption). The amount and quality of published scientific works also demonstrate that still there are many points to investigate until understanding perfectly how the microorganisms interact with the different phases and compounds that conforms the porous matrix of the soil. In this sense IAP emphasizes the necessity to have a previous study of characterization for any contaminated soil that it wants to be treated by means of technologies based on the bio-remediation. In a similar line, it emphasizes the studies about bio-remediation presented in the 8. Consoil (May of 2003). The works presented in this forum put in evidence the necessity of arrange pilot experiences of application that allow to advance in the development of new technologies applicable to similar scales to the real ones. Also the bio-remediation based on the bio-stimulation of the endogenous microbial populations by means of the addition of

BioSWR--semantic web services registry for bioinformatics.

Directory of Open Access Journals (Sweden)

Dmitry Repchevsky

Full Text Available Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL. Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL. BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/under the LGPL license.

BioSWR--semantic web services registry for bioinformatics.

Science.gov (United States)

Repchevsky, Dmitry; Gelpi, Josep Ll

2014-01-01

Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL). Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL). BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF) based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST) API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/under the LGPL license.

Linear optics and projective measurements alone suffice to create large-photon-number path entanglement

International Nuclear Information System (INIS)

Lee, Hwang; Kok, Pieter; Dowling, Jonathan P.; Cerf, Nicolas J.

2002-01-01

We propose a method for preparing maximal path entanglement with a definite photon-number N, larger than two, using projective measurements. In contrast with the previously known schemes, our method uses only linear optics. Specifically, we exhibit a way of generating four-photon, path-entangled states of the form vertical bar 4,0>+ vertical bar 0,4>, using only four beam splitters and two detectors. These states are of major interest as a resource for quantum interferometric sensors as well as for optical quantum lithography and quantum holography

Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis

International Nuclear Information System (INIS)

Mullen, Charles A.; Boateng, Akwasi A.; Goldberg, Neil M.; Lima, Isabel M.; Laird, David A.; Hicks, Kevin B.

2010-01-01

Bio-oil and bio-char were produced from corn cobs and corn stover (stalks, leaves and husks) by fast pyrolysis using a pilot scale fluidized bed reactor. Yields of 60% (mass/mass) bio-oil (high heating values are ∼20 MJ kg -1 , and densities >1.0 Mg m -3 ) were realized from both corn cobs and from corn stover. The high energy density of bio-oil, ∼20-32 times on a per unit volume basis over the raw corn residues, offers potentially significant savings in transportation costs particularly for a distributed 'farm scale' bio-refinery system. Bio-char yield was 18.9% and 17.0% (mass/mass) from corn cobs and corn stover, respectively. Deploying the bio-char co-product, which contains most of the nutrient minerals from the corn residues, as well as a significant amount of carbon, to the land can enhance soil quality, sequester carbon, and alleviate environmental problems associated with removal of crop residues from fields.

Bio-methane & Bio-hydrogen. Status and perspectives of biological methane and hydrogen production

NARCIS (Netherlands)

Wijffels, R.H.; Janssen, M.G.J.

2003-01-01

Eerst wordt het kader geschetst voor de potentiële rol van bio-methaan en bio-waterstof in de energiehuishouding en de invloeden daarop van de ontwikkeling van eindgebruikstechnologie en infrastructuur, en het energiebeleid. Daarna wordt uitvoerig ingegaan op de technieken voor bio-methaan en

EMBIO - The Danish Energy Agency's model for economic and environmental evaluation of bio-fuels. Appendix

International Nuclear Information System (INIS)

1997-01-01

A methodological concept is established for a life-cycle based model which can be used for socio- and private economic and environmental assessment of automotive bio-fuels. The calculation method must be able to calculate socio-economic, energy, environmental, and other consequences by alternative productions and uses of bio-fuels. The main emphasis in the development of the model has been put on the relation between CO 2 reduction and economics. The appendix presents details of the model used for evaluating two specific projects: 'Bio-diesel in the Lemvig area (Denmark), rape seeds as energy crops'; 'Ethanol in the green bio-refining plant'. The results from the use of the model are presented and sensitivity analyses of the model results are performed. Furthermore, a number of background information is presented to be used in relation to the model for evaluating alternative production methods and uses of bio-fuels. Primarily Danish and other European sources of information are selected. (LN)

BioAir: Bio-Inspired Airborne Infrastructure Reconfiguration

Science.gov (United States)

2016-01-01

must also minimize resource usage due to limitations on the amount of processing , memory and power onboard a node. BioAIR assumes the availability of...subsequent maintenance of tentacles, each node will take one of the following roles: “ orphan ”, “free”, “tip”, “backbone” or “extra”. The BioAIR...algorithm dictates that when a node is disconnected from the tentacle or origin it is an orphan , and as such it will change its target to the nearest

World-wide ocean optics database WOOD (NODC Accession 0092528)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — WOOD was developed to be a comprehensive publicly-available oceanographic bio-optical database providing global coverage. It includes nearly 250 major data sources...

Indirubin Derivative 7-Bromoindirubin-3-Oxime (7Bio Attenuates Aβ Oligomer-Induced Cognitive Impairments in Mice

Directory of Open Access Journals (Sweden)

Liping Chen

2017-11-01

Full Text Available Indirubins are natural occurring alkaloids extracted from indigo dye-containing plants. Indirubins could inhibit various kinases, and might be used to treat chronic myelocytic leukemia, cancer and neurodegenerative disorders. 7-bromoindirubin-3-oxime (7Bio, an indirubin derivative derived from indirubin-3-oxime, possesses inhibitory effects against cyclin-dependent kinase-5 (CDK5 and glycogen synthase kinase-3β (GSK3β, two pharmacological targets of Alzheimer's disease (AD. In this study, we have discovered that 2.3–23.3 μg/kg 7Bio effectively prevented β-amyloid (Aβ oligomer-induced impairments of spatial cognition and recognition without affecting bodyweight and motor functions in mice. Moreover, 7Bio potently inhibited Aβ oligomer-induced expression of interleukin-6 (IL-6 and tumor necrosis factor-α (TNF-α. Furthermore, 7Bio significantly prevented the decreased expression of synapsin-1 and PSD-95, biomarkers of pre-synaptic and post-synaptic proteins in Aβ oligomer-treated mice. The mean optical density (OD with hyper-phosphorylated tau (pTau, glial fibrillary acidic protein (GFAP and CD45 positive staining in the hippocampus of 7Bio-treated mice were significantly decreased compared to those of Aβ oligomer-treated mice. In addition, Western blotting analysis showed that 7Bio attenuated Aβ oligomer-decreased expression of pSer9-GSK3β. Those results suggested that 7Bio could potently inhibit Aβ oligomer-induced neuroinflammation, synaptic impairments, tau hyper-phosphorylation, and activation of astrocytes and microglia, which may contribute to the neuroprotective effects of 7Bio. Based on these findings, we expected that 7Bio might be developed as a novel anti-AD lead compound.

Sensitive optical bio-sensing of p-type WSe2 hybridized with fluorescent dye attached DNA by doping and de-doping effects

Science.gov (United States)

Han, Kyu Hyun; Kim, Jun Young; Jo, Seong Gi; Seo, Changwon; Kim, Jeongyong; Joo, Jinsoo

2017-10-01

Layered transition metal dichalcogenides, such as MoS2, WSe2 and WS2, are exciting two-dimensional (2D) materials because they possess tunable optical and electrical properties that depend on the number of layers. In this study, the nanoscale photoluminescence (PL) characteristics of the p-type WSe2 monolayer, and WSe2 layers hybridized with the fluorescent dye Cy3 attached to probe-DNA (Cy3/p-DNA), have been investigated as a function of the concentration of Cy3/DNA by using high-resolution laser confocal microscopy. With increasing concentration of Cy3/p-DNA, the measured PL intensity decreases and its peak is red-shifted, suggesting that the WSe2 layer has been p-type doped with Cy3/p-DNA. Then, the PL intensity of the WSe2/Cy3/p-DNA hybrid system increases and the peak is blue-shifted through hybridization with relatively small amounts of target-DNA (t-DNA) (50-100 nM). This effect originates from charge and energy transfer from the Cy3/DNA to the WSe2. For t-DNA detection, our systems using p-type WSe2 have the merit in terms of the increase of PL intensity. The p-type WSe2 monolayers can be a promising nanoscale 2D material for sensitive optical bio-sensing based on the doping and de-doping responses to biomaterials.

Design of a multimodal fibers optic system for small animal optical imaging.

Science.gov (United States)

Spinelli, Antonello E; Pagliazzi, Marco; Boschi, Federico

2015-02-01

Small animals optical imaging systems are widely used in pre-clinical research to image in vivo the bio-distribution of light emitting probes using fluorescence or bioluminescence modalities. In this work we presented a set of simulated results of a novel small animal optical imaging module based on a fibers optics matrix, coupled with a position sensitive detector, devoted to acquire bioluminescence and Cerenkov images. Simulations were performed using GEANT 4 code with the GAMOS architecture using the tissue optics plugin. Results showed that it is possible to image a 30 × 30 mm region of interest using a fiber optics array containing 100 optical fibers without compromising the quality of the reconstruction. The number of fibers necessary to cover an adequate portion of a small animal is thus quite modest. This design allows integrating the module with magnetic resonance (MR) in order to acquire optical and MR images at the same time. A detailed model of the mouse anatomy, obtained by segmentation of 3D MRI images, will improve the quality of optical 3D reconstruction. Copyright © 2014 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Production of bio-energies

International Nuclear Information System (INIS)

Gurtler, J.L.; Femenias, A.; Blondy, J.

2009-01-01

After having indicated the various possible origins of biomass, this paper considers the issue of bio-energies, i.e., energies produced with biomass related to forest or agriculture production. Some indicators are defined (share of renewable energies, share of biomass in the energy production and consumption, number of production units). Stake holders are identified. Then, major and emerging trends are identified and discussed. The major trends are: development and diversification of renewable energies, development of bio-fuels with the support of incentive policies, prevalence of the wood-energy sector on the whole renewable energies, increase of surfaces dedicated to bio-fuels since the end of the 1990's, a French biogas sector which is late with respect to other countries. The emerging trends are: the important role of oil price in the development of bio-fuels, a necessary public support for the development of biogas, mobilization of research and development of competitiveness poles for bio-industries. Some prospective issues are also discussed in terms of uncertainties (soil availabilities, environmental performance of bio-fuels, available biomass resource, need of a technological advance, and evolution of energy needs on a medium term, tax and public policy). Three hypotheses of bio-energy evolutions are discussed

Enhancing thermal reliability of fiber-optic sensors for bio-inspired applications at ultra-high temperatures

International Nuclear Information System (INIS)

Kang, Donghoon; Kim, Heon-Young; Kim, Dae-Hyun

2014-01-01

The rapid growth of bio-(inspired) sensors has led to an improvement in modern healthcare and human–robot systems in recent years. Higher levels of reliability and better flexibility, essential features of these sensors, are very much required in many application fields (e.g. applications at ultra-high temperatures). Fiber-optic sensors, and fiber Bragg grating (FBG) sensors in particular, are being widely studied as suitable sensors for improved structural health monitoring (SHM) due to their many merits. To enhance the thermal reliability of FBG sensors, thermal sensitivity, generally expressed as α f + ξ f and considered a constant, should be investigated more precisely. For this purpose, the governing equation of FBG sensors is modified using differential derivatives between the wavelength shift and the temperature change in this study. Through a thermal test ranging from RT to 900 °C, the thermal sensitivity of FBG sensors is successfully examined and this guarantees thermal reliability of FBG sensors at ultra-high temperatures. In detail, α f + ξ f has a non-linear dependence on temperature and varies from 6.0 × 10 −6  °C −1 (20 °C) to 10.6 × 10 −6  °C −1 (650 °C). Also, FBGs should be carefully used for applications at ultra-high temperatures due to signal disappearance near 900 °C. (paper)

Bio-inspired multi-mode optic flow sensors for micro air vehicles

Science.gov (United States)

Park, Seokjun; Choi, Jaehyuk; Cho, Jihyun; Yoon, Euisik

2013-06-01

Monitoring wide-field surrounding information is essential for vision-based autonomous navigation in micro-air-vehicles (MAV). Our image-cube (iCube) module, which consists of multiple sensors that are facing different angles in 3-D space, can be applied to the wide-field of view optic flows estimation (μ-Compound eyes) and to attitude control (μ- Ocelli) in the Micro Autonomous Systems and Technology (MAST) platforms. In this paper, we report an analog/digital (A/D) mixed-mode optic-flow sensor, which generates both optic flows and normal images in different modes for μ- Compound eyes and μ-Ocelli applications. The sensor employs a time-stamp based optic flow algorithm which is modified from the conventional EMD (Elementary Motion Detector) algorithm to give an optimum partitioning of hardware blocks in analog and digital domains as well as adequate allocation of pixel-level, column-parallel, and chip-level signal processing. Temporal filtering, which may require huge hardware resources if implemented in digital domain, is remained in a pixel-level analog processing unit. The rest of the blocks, including feature detection and timestamp latching, are implemented using digital circuits in a column-parallel processing unit. Finally, time-stamp information is decoded into velocity from look-up tables, multiplications, and simple subtraction circuits in a chip-level processing unit, thus significantly reducing core digital processing power consumption. In the normal image mode, the sensor generates 8-b digital images using single slope ADCs in the column unit. In the optic flow mode, the sensor estimates 8-b 1-D optic flows from the integrated mixed-mode algorithm core and 2-D optic flows with an external timestamp processing, respectively.

Determining the bio-based content of bio-plastics used in Thailand by radiocarbon analysis

Science.gov (United States)

Ploykrathok, T.; Chanyotha, S.

2017-06-01

Presently, there is an increased interest in the development of bio-plastic products from agricultural materials which are biodegradable in order to reduce the problem of waste disposal. Since the amount of modern carbon in bio-plastics can indicate how much the amount of agricultural materials are contained in the bio-plastic products, this research aims to determine the modern carbon in bio-plastic using the carbon dioxide absorption method. The radioactivity of carbon-14 contained in the sample is measured by liquid scintillation counter (Tri-carb 3110 TR, PerkinElmer). The percentages of bio-based content in the samples were determined by comparing the observed modern carbon content with the values contained in agricultural raw materials. The experimental results show that only poly(lactic acid) samples have the modern carbon content of 97.4%, which is close to the agricultural materials while other bio-plastics types are found to have less than 50% of the modern carbon content. In other words, most of these bio-plastic samples were mixed with other materials which are not agriculturally originated.

Determining the bio-based content of bio-plastics used in Thailand by radiocarbon analysis

International Nuclear Information System (INIS)

Ploykrathok, T; Chanyotha, S

2017-01-01

Presently, there is an increased interest in the development of bio-plastic products from agricultural materials which are biodegradable in order to reduce the problem of waste disposal. Since the amount of modern carbon in bio-plastics can indicate how much the amount of agricultural materials are contained in the bio-plastic products, this research aims to determine the modern carbon in bio-plastic using the carbon dioxide absorption method. The radioactivity of carbon-14 contained in the sample is measured by liquid scintillation counter (Tri-carb 3110 TR, PerkinElmer). The percentages of bio-based content in the samples were determined by comparing the observed modern carbon content with the values contained in agricultural raw materials. The experimental results show that only poly(lactic acid) samples have the modern carbon content of 97.4%, which is close to the agricultural materials while other bio-plastics types are found to have less than 50% of the modern carbon content. In other words, most of these bio-plastic samples were mixed with other materials which are not agriculturally originated. (paper)

Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis

Energy Technology Data Exchange (ETDEWEB)

Mullen, Charles A.; Boateng, Akwasi A.; Goldberg, Neil M.; Hicks, Kevin B. [Eastern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, 600 E. Mermaid Lane, Wyndmoor, PA 19038 (United States); Lima, Isabel M. [Southern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, 1100 Robert E. Lee Blvd., New Orleans, LA 70124 (United States); Laird, David A. [National Soil Tilth Laboratory, U.S. Agricultural Research Service, U.S. Department of Agriculture, 2110 University Blvd., Ames, IA 50011 (United States)

2010-01-15

Bio-oil and bio-char were produced from corn cobs and corn stover (stalks, leaves and husks) by fast pyrolysis using a pilot scale fluidized bed reactor. Yields of 60% (mass/mass) bio-oil (high heating values are {proportional_to}20 MJ kg{sup -1}, and densities >1.0 Mg m{sup -3}) were realized from both corn cobs and from corn stover. The high energy density of bio-oil, {proportional_to}20-32 times on a per unit volume basis over the raw corn residues, offers potentially significant savings in transportation costs particularly for a distributed ''farm scale'' bio-refinery system. Bio-char yield was 18.9% and 17.0% (mass/mass) from corn cobs and corn stover, respectively. Deploying the bio-char co-product, which contains most of the nutrient minerals from the corn residues, as well as a significant amount of carbon, to the land can enhance soil quality, sequester carbon, and alleviate environmental problems associated with removal of crop residues from fields. (author)

Art + Bioéthique : expériences interdisciplinaires dans une galerie émergente

Directory of Open Access Journals (Sweden)

Lorrain, Aïda

2016-09-01

Full Text Available This review retraces the exhibition and the principle events of the collaborative project Art + Bioéthique. These were held at the Montreal gallery Espace Projet from February 25 to March 21, 2016.

Opportunities for biomass-derived 'bio-oil' in European heat and power markets

International Nuclear Information System (INIS)

Brammer, J.G.; Lauer, M.; Bridgwater, A.V.

2006-01-01

Bio-oil (biomass fast pyrolysis) systems for heat, power or CHP production are nearing demonstration status. Their commercial attractiveness will depend on many factors, and will vary with the application, the scale, and importantly the location and its associated economic and logistical factors. The objective of this work, carried out as part of an EC-ALTENER project, was to evaluate the opportunities for bio-oil in the heat and power markets of Europe. Bio-oil applications were compared with conventional (fossil) alternatives for the same heat and power duty. The evaluation was carried out by a quantitative assessment of the economic competitiveness of standard applications in 14 European countries. Location-specific data were collected, and combined with technology-specific data obtained from earlier work. A competitiveness factor (c F ) was derived which represents the total annual cost of a conventional alternative relative to a bio-oil application. The results showed a wide variation across Europe. A total of six countries had at least one bio-oil application which was economically competitive. Heat-only applications were found to be the most economically competitive, followed by CHP applications, with electricity-only applications only very rarely competitive. For a given technology, the larger the scale, the better the competitiveness

Opportunities for biomass-derived 'bio-oil' in European heat and power markets

International Nuclear Information System (INIS)

Brammer, J.G.; Bridgwater, A.V.

2006-01-01

Bio-oil (biomass fast pyrolysis) systems for heat, power or CHP production are nearing demonstration status. Their commercial attractiveness will depend on many factors, and will vary with the application, the scale, and importantly the location and its associated economic and logistical factors. The objective of this work, carried out as part of an EC-ALTENER project, was to evaluate the opportunities for bio-oil in the heat and power markets of Europe. Bio-oil applications were compared with conventional (fossil) alternatives for the same heat and power duty. The evaluation was carried out by a quantitative assessment of the economic competitiveness of standard applications in 14 European countries. Location-specific data were collected, and combined with technology-specific data obtained from earlier work. A competitiveness factor (c F ) was derived which represents the total annual cost of a conventional alternative relative to a bio-oil application. The results showed a wide variation across Europe. A total of six countries had at least one bio-oil application which was economically competitive. Heat-only applications were found to be the most economically competitive, followed by CHP applications, with electricity-only applications only very rarely competitive. For a given technology, the larger the scale, the better the competitiveness. (author)

BioHack*Kolding

DEFF Research Database (Denmark)

Wilde, Danielle

Short Abstract BioHack*Kolding explores the potential of do-it-together biology to support community building in a town that lacks strong science representation, assisting participants to reflect on the bio-potential of their personal, social and political ecologies and to translate their ideas...... into action. Long Abstract Organisations that support lay people to practice bioscience alongside experts are proliferating. They enable interested people to join the global discussion on Bio Engineering by supporting them to gain the necessary knowledge and skills to do it themselves. Such organisations play...... an important role in facilitating informed debate around the biological sciences. Yet they cannot reach everyone. BioHack*Kolding asks how community-focused biology initiatives can reach people in smaller towns that lack science representation, so that they too can join the debate and ensure that its...

The BioSCWG Project: Understanding the Trade-Offs in the Process and Thermal Design of Hydrogen and Synthetic Natural Gas Production

Directory of Open Access Journals (Sweden)

Mohamed Magdeldin

2016-10-01

Full Text Available This article presents a summary of the main findings from a collaborative research project between Aalto University in Finland and partner universities. A comparative process synthesis, modelling and thermal assessment was conducted for the production of Bio-synthetic natural gas (SNG and hydrogen from supercritical water refining of a lipid extracted algae feedstock integrated with onsite heat and power generation. The developed reactor models for product gas composition, yield and thermal demand were validated and showed conformity with reported experimental results, and the balance of plant units were designed based on established technologies or state-of-the-art pilot operations. The poly-generative cases illustrated the thermo-chemical constraints and design trade-offs presented by key process parameters such as plant organic throughput, supercritical water refining temperature, nature of desirable coproducts, downstream indirect production and heat recovery scenarios. The evaluated cases favoring hydrogen production at 5 wt. % solid content and 600 °C conversion temperature allowed higher gross syngas and CHP production. However, mainly due to the higher utility demands the net syngas production remained lower compared to the cases favoring BioSNG production. The latter case, at 450 °C reactor temperature, 18 wt. % solid content and presence of downstream indirect production recorded 66.5%, 66.2% and 57.2% energetic, fuel-equivalent and exergetic efficiencies respectively.

On-site hydrolytic enzymes production from fungal co-cultivation of Bermuda grass and corn cob.

Science.gov (United States)

Amaro-Reyes, Aldo; Gracida, Jorge; Huizache-Peña, Nelson; Elizondo-García, Norberto; Salazar-Martínez, José; García Almendárez, Blanca E; Regalado, Carlos

2016-07-01

Solid state fermentation (SSF) is used to produce industrial enzymes. The objective of this study was to use a co-culture of Aspergillus niger GS1 and Trichoderma reesei, grown on a mixture of Bermuda grass and corn cob to obtain fermented forage (FF) rich in hydrolytic enzymes, as a value added ingredient for animal feed. FPase, amylase and xylanase productivities (dry matter, DM) were 8.8, 181.4, and 42.1Ug(-1)h(-1), respectively (1U=reducing sugars released min(-1)), after 12-16h of SSF with C/N=60. Cellulose, hemicellulose and lignin decreased 1.6-, 2.7- and 1.9-fold (DM), respectively. In vitro ruminal and true digestibility of DM was improved 2.4- and 1.4-fold. Ruminal digestion of FF reduced 1.32-fold the acetate:propionate ratio, which may reduce the environmental impact of ruminants feeding. On-site hydrolytic enzymes productivity using SSF without enzymes extraction could be of economic potential for digestibility improvement in animal feed. Copyright © 2016 Elsevier Ltd. All rights reserved.

The problem of bio-concepts: biopolitics, bio-economy and the political economy of nothing

Science.gov (United States)

Birch, Kean

2017-12-01

Scholars in science and technology studies—and no doubt other fields—have increasingly drawn on Michel Foucault's concept of biopolitics to theorize a variety of new `bio-concepts'. While there might be some theoretical value in such exercises, many of these bio-concepts have simply replaced more rigorous—and therefore time-consuming—analytical work. This article provides a (sympathetic) critique of these various bio-concepts, especially as they are applied to the emerging `bio-economy'. In so doing, the article seeks to show that the analysis of the bio-economy could be better framed as a political economy of nothing. This has several implications for science education, which are raised in the article.

Method to upgrade bio-oils to fuel and bio-crude

Science.gov (United States)

Steele, Philip H; Pittman, Jr., Charles U; Ingram, Jr., Leonard L; Gajjela, Sanjeev; Zhang, Zhijun; Bhattacharya, Priyanka

2013-12-10

This invention relates to a method and device to produce esterified, olefinated/esterified, or thermochemolytic reacted bio-oils as fuels. The olefinated/esterified product may be utilized as a biocrude for input to a refinery, either alone or in combination with petroleum crude oils. The bio-oil esterification reaction is catalyzed by addition of alcohol and acid catalyst. The olefination/esterification reaction is catalyzed by addition of resin acid or other heterogeneous catalyst to catalyze olefins added to previously etherified bio-oil; the olefins and alcohol may also be simultaneously combined and catalyzed by addition of resin acid or other heterogeneous catalyst to produce the olefinated/esterified product.

Environmental assessment of metal exposure to corals living in Castle Harbour, Bermuda

Science.gov (United States)

Prouty, N.G.; Goodkin, N.F.; Jones, R.; Lamborg, C.H.; Storlazzi, C.D.; Hughen, K.A.

2013-01-01

Environmental contamination in Castle Harbour, Bermuda, has been linked to the dissolution and leaching of contaminants from the adjacent marine landfill. This study expands the evidence for environmental impact of leachate from the landfill by quantitatively demonstrating elevated metal uptake over the last 30 years in corals growing in Castle Harbour. Coral Pb/Ca, Zn/Ca and Mn/Ca ratios and total Hg concentrations are elevated relative to an adjacent control site in John Smith's Bay. The temporal variability in the Castle Harbour coral records suggests that while the landfill has increased in size over the last 35 years, the dominant input of metals is through periodic leaching of contaminants from the municipal landfill and surrounding sediment. Elevated contaminants in the surrounding sediment suggest that resuspension is an important transport medium for transferring heavy metals to corals. Increased winds, particularly during the 1990s, were accompanied by higher coral metal composition at Castle Harbour. Coupled with wind-induced resuspension, interannual changes in sea level within the Harbour can lead to increased bioavailability of sediment-bound metals and subsequent coral metal assimilation. At John Smith's Bay, large scale convective mixing may be driving interannual metal variability in the coral record rather than impacts from land-based activities. Results from this study provide important insights into the coupling of natural variability and anthropogenic input of contaminants to the nearshore environment.

Three-dimensional DNA image cytometry by optical projection tomographic microscopy for early cancer diagnosis.

Science.gov (United States)

Agarwal, Nitin; Biancardi, Alberto M; Patten, Florence W; Reeves, Anthony P; Seibel, Eric J

2014-04-01

Aneuploidy is typically assessed by flow cytometry (FCM) and image cytometry (ICM). We used optical projection tomographic microscopy (OPTM) for assessing cellular DNA content using absorption and fluorescence stains. OPTM combines some of the attributes of both FCM and ICM and generates isometric high-resolution three-dimensional (3-D) images of single cells. Although the depth of field of the microscope objective was in the submicron range, it was extended by scanning the objective's focal plane. The extended depth of field image is similar to a projection in a conventional x-ray computed tomography. These projections were later reconstructed using computed tomography methods to form a 3-D image. We also present an automated method for 3-D nuclear segmentation. Nuclei of chicken, trout, and triploid trout erythrocyte were used to calibrate OPTM. Ratios of integrated optical densities extracted from 50 images of each standard were compared to ratios of DNA indices from FCM. A comparison of mean square errors with thionin, hematoxylin, Feulgen, and SYTOX green was done. Feulgen technique was preferred as it showed highest stoichiometry, least variance, and preserved nuclear morphology in 3-D. The addition of this quantitative biomarker could further strengthen existing classifiers and improve early diagnosis of cancer using 3-D microscopy.

Single Mode SU8 Polymer Based Mach-Zehnder Interferometer for Bio-Sensing Application

Science.gov (United States)

Boiragi, Indrajit; Kundu, Sushanta; Makkar, Roshan; Chalapathi, Krishnamurthy

2011-10-01

This paper explains the influence of different parameters to the sensitivity of an optical waveguide Mach-Zehnder Interferometer (MZI) for real time detection of biomolecules. The sensing principle is based on the interaction of evanescence field with the biomolecules that get immobilized on sensing arm. The sensitivity has been calculated by varying the sensing window length, wavelength and concentration of bio-analyte. The maximum attainable sensitivity for the preferred design is the order of 10-8 RIU at 840 nm wavelength with a sensing window length of 1cm. All the simulation work has been carried out with Opti-BPMCAD for the optimization of MZI device parameters. The SU8 polymers are used as a core and clad material to fabricate the waveguide. The refractive index of cladding layer is optimized by varying the curing temperature for a fixed time period and the achieved index difference between core and clad is Δn = 0.0151. The fabricated MZI device has been characterized with LASER beam profiler at 840 nm wavelength. This study demonstrates the effectiveness of the different parameter to the sensitivity of a single mode optical waveguide Mach-Zehnder Interferometer for bio-sensing application.

From bio-resources to industry. Agrice 2 Activity report 2001-2007

International Nuclear Information System (INIS)

2007-01-01

framework of this new programme. This AGRICE 2001-2007 activity report presents: - the AGRICE's Profile, Structure and operations; - Scope of AGRICE's activity and 2001-2007 AGRICE II activity, 2001-2007 Applications; - sectors of activity: bio-energy, bio-products, Biomaterials; - AGRICE Activities from 2001 to 2007: Role and activities, Knowledge, Market studies, Environmental impact studies, Resources, Communication (Conferences and Technical study days Publications), Extracting value, Industrial success stories, International networks and programmes, Evaluation of AGRICE II (objectives, Principal findings and recommendations); In appendix: the Financial statement 2007 and 2001-2007; the evaluation of projects by theme; The topical breakdown of subsidies allocated by AGRICE (2001-2007); the projects initiated from 2001 to 2007; the members of the group council and AGRICE representatives; the AGRICE team

BioGPS descriptors for rational engineering of enzyme promiscuity and structure based bioinformatic analysis.

Directory of Open Access Journals (Sweden)

Valerio Ferrario

Full Text Available A new bioinformatic methodology was developed founded on the Unsupervised Pattern Cognition Analysis of GRID-based BioGPS descriptors (Global Positioning System in Biological Space. The procedure relies entirely on three-dimensional structure analysis of enzymes and does not stem from sequence or structure alignment. The BioGPS descriptors account for chemical, geometrical and physical-chemical features of enzymes and are able to describe comprehensively the active site of enzymes in terms of "pre-organized environment" able to stabilize the transition state of a given reaction. The efficiency of this new bioinformatic strategy was demonstrated by the consistent clustering of four different Ser hydrolases classes, which are characterized by the same active site organization but able to catalyze different reactions. The method was validated by considering, as a case study, the engineering of amidase activity into the scaffold of a lipase. The BioGPS tool predicted correctly the properties of lipase variants, as demonstrated by the projection of mutants inside the BioGPS "roadmap".

Development of a multi-data assimilation scheme to integrate Bio-Argo floats data with ocean colour satellite data into the CMEMS MFC-Biogeochemistry

Science.gov (United States)

Cossarini, Gianpiero; D'Ortenzio, Fabrizio; Mariotti, Laura; Mignot, Alexandre; Salon, Stefano

2017-04-01

The Mediterranean Sea is a very promising site to develop and test the assimilation of Bio-Argo data since 1) the Bio-Argo network is one of the densest of the global ocean, and 2) a consolidate data assimilation framework of biogeochemical variables (3DVAR-BIO, presently based on assimilation of satellite-estimated surface chlorophyll data) already exists within the CMEMS biogeochemical model system for Mediterranean Sea. The MASSIMILI project, granted by the CMEMS Service Evolution initiative, is aimed to develop the assimilation of Bio-Argo Floats data into the CMEMS biogeochemical model system of the Mediterranean Sea, by means of an upgrade of the 3DVAR-BIO scheme. Specific developments of the 3DVAR-BIO scheme focus on the estimate of new operators of the variational decomposition of the background error covariance matrix and on the implementation of the new observation operator specifically for the Bio-Argo float vertical profile data. In particular, a new horizontal covariance operator for chlorophyll, nitrate and oxygen is based on 3D fields of horizontal correlation radius calculated from a long-term reanalysis simulation. A new vertical covariance operator is built on monthly and spatial varying EOF decomposition to account for the spatiotemporal variability of vertical structure of the three variables error covariance. Further, the observation error covariance is a key factor for an effective assimilation of the Bio-Argo data into the model dynamics. The sensitivities of assimilation to the different factors are estimated. First results of the implementation of the new 3DVAR-BIO scheme show the impact of Bio-Argo data on the 3D fields of chlorophyll, nitrate and oxygen. Tuning the length scale factors of horizontal covariance, analysing the sensitivity of the observation error covariance, introducing non-diagonal biogeochemical covariance operator and non-diagonal multi-platform operator (i.e. Bio-Argo and satellite) are crucial future steps for the

Optical properties of the electrostatic mirror: application to the Orsay project

International Nuclear Information System (INIS)

Schapira, J.P.

1983-01-01

Optical properties: transfer matrix and acceptance of the electrostatic mirror have been calculated for any transit time value. Advantage of this type of inflector for axial injection into a compact cyclotron are discussed. Nevertheless one points out that the use of a mirror implies beam of very good quality, due to large transit time fluctuation related to the geometrical emittance. This is specially relevant to the case of the Orsay project, where one aims at a phase grouping of few R.F. degrees [fr

Bio diesel production from algae

International Nuclear Information System (INIS)

Khola, G.; Ghazala, B.

2011-01-01

Algae appear to be an emerging source of biomass for bio diesel that has the potential to completely displace fossil fuel. Two thirds of earth's surface is covered with water, thus alga e would truly be renewable option of great potential for global energy needs. This study discusses specific and comparative bio diesel quantitative potential of Cladophora sp., also highlighting its biomass (after oil extraction), pH and sediments (glycerine, water and pigments) quantitative properties. Comparison of Cladophora sp., with Oedogonium sp., and Spirogyra sp., (Hossain et al., 2008) shows that Cladophora sp., produce higher quantity of bio diesel than Spirogyra sp., whereas biomass and sediments were higher than the both algal specimens in comparison to the results obtained by earlier workers. No prominent difference in pH of bio diesel was found. In Pakistan this is a first step towards bio diesel production from algae. Results indicate that Cladophora sp., provide a reasonable quantity of bio diesel, its greater biomass after oil extraction and sediments make it a better option for bio diesel production than the comparing species. (author)

Thermodynamics of non-bridging oxigen in silica bio-compatible glass-ceramics

Czech Academy of Sciences Publication Activity Database

Koga, N.; Strnad, Z.; Šesták, Jaroslav; Strnad, J.

2003-01-01

Roč. 71, - (2003), s. 927-937 ISSN 1418-2874 R&D Projects: GA AV ČR IAA4010101 Institutional research plan: CEZ:AV0Z1010914 Keywords : bio-compatible * bone-like apatite * glass-ceramics * mimetic material * thermodynamics Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 0.598, year: 2002

Integrated optical sensors for the chemical domain

NARCIS (Netherlands)

Lambeck, Paul

2006-01-01

During the last decade there has been a rapidly growing interest in integrated optical (IO) sensors, expecially because many of them principally allow for sensitive, real time, label-free-on-site measurements of the concentration of (bio-)chemical species. This review aims at giving an overview of

Bio-energy status document 2012; Statusdocument bio-energie 2012

Energy Technology Data Exchange (ETDEWEB)

Bles, M.; Schepers, B.L.; Van Grinsven, A.H.; Bergsma, G.C.; Croezen, H.C.

2013-05-15

In 2012 bio-energy contributed over 71 PJ to the Dutch energy supply, a rise of almost 2 PJ over 2011. This means that 75% of the renewable energy consumed in the Netherlands is now derived from biomass. The growth is due mainly to the increase in the mandatory biotransport fuel percentage from 4.25% to 4.5%. The use of energy from 'other biomass combustion' (incl. paper sludge, green waste and chicken excrement) recovered to the level of 2010, following a marked drop in 2011 due to plant maintenance, termination of the MEP ('Environmental Quality of Power Generation') subsidy scheme and high biomass prices. At large power stations there was a considerable decrease in co-incineration of biomass because of incidents (a fire at the Nijmegen coal-fired plant) and a maintenance backlog (at the Amer power station). These are some of the results reported in the 'Bio-energy status document 2012', prepared by CE Delft for NL Agency. In addition to a review and characterisation of the current situation, the report contains an update on government policies on bio-energy and a review of the sources and sustainability of the biomass used in the Netherlands [Dutch] De bijdrage van bio-energie aan de Nederlandse energievoorziening bedroeg in 2012 ruim 71 PJ, een stijging van bijna 2 PJ ten opzichte van 2011. Daarmee is 75% van het verbruik van hernieuwbare energie in Nederland afkomstig van bio-energie. De stijging wordt vooral veroorzaakt door de oplopende bijmengplicht van biotransportbrandstoffen van 4,25% naar 4,5%. Verbruik van energie uit 'overige biomassaverbranding' (o.a. papierslib, groenafval en kippenmest) herstelde zicht tot het niveau van 2010, na een forse daling in 2011 door onderhoud aan installaties, afloop van MEP-subsidies en hoge prijzen van biomassa. Het bij- en meestoken van biomassa in grote elektriciteitscentrales daalde juist aanzienlijk door calamiteiten en uitloop van onderhoud (brand kolencentrale bij Nijmegen

The European FP7 CHRON Project: Towards Cognitive Heterogeneous Reconfigurable Optical Networks

DEFF Research Database (Denmark)

Miguel, I. de; Duran, R.J.; Abril, E.J.

2010-01-01

We provide an overview of the EU-funded CHRON project, which addresses the challenge of controlling and managing the next generation of heterogeneous optical networks supporting the Future Internet. Such networks will be of a highly heterogeneous nature in terms of both a wide variety of services...... is on the essential elements of the proposed cognitive network, in particular a cognitive decision system, an intelligent monitoring system, and a cognitive control system....

Tank waste remediation system year 2000 dedicated file server project HNF-3418 project plan

International Nuclear Information System (INIS)

SPENCER, S.G.

1999-01-01

The Server Project is to ensure that all TWRS supporting hardware (fileservers and workstations) will not cause a system failure because of the BIOS or Operating Systems cannot process Year 2000 dates

Tank waste remediation system year 2000 dedicated file server project HNF-3418 project plan

Energy Technology Data Exchange (ETDEWEB)

SPENCER, S.G.

1999-04-26

The Server Project is to ensure that all TWRS supporting hardware (fileservers and workstations) will not cause a system failure because of the BIOS or Operating Systems cannot process Year 2000 dates.

Validation Test Report for the BioCast Optical Forecast Model Version 1.0

Science.gov (United States)

2015-04-09

hour forecast sequence have been established for ten months of continuous daily forecasting sequence trails in the northern Gulf of Mexico and the...beam-c field) is combined with today’s NCOM hourly forecast currents to predict the turbidity distribution (c)1 in 24 hours. The following day’s...proxy for turbidity ) coupled with the currents derived from the NCOM, BioCast enables the currents to advect the turbidity pixel information

BioSWR – Semantic Web Services Registry for Bioinformatics

Science.gov (United States)

Repchevsky, Dmitry; Gelpi, Josep Ll.

2014-01-01

Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL). Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL). BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF) based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST) API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/under the LGPL license. PMID:25233118

Six recommendations for a bio-based economy in the Netherlands

International Nuclear Information System (INIS)

Van der Hoeven, D.

2009-03-01

The Bio-based Raw Materials Platform (PGG), part of the Energy Transition in The Netherlands, commissioned the Agricultural Economics Research Institute (LEI) and the Copernicus Institute of Utrecht University to conduct research on the macro-economic impact of large scale deployment of biomass for energy and materials in the Netherlands. Two model approaches were applied based on a consistent set of scenario assumptions: a bottom-up study including technoeconomic projections of fossil and bio-based conversion technologies and a topdown study including macro-economic modelling of (global) trade of biomass and fossil resources. The results of the top-down and bottom-up modelling work are reported separately. Based on the results of the studies the platform formulated six recommendations [nl

Utilization of oil palm tree residues to produce bio-oil and bio-char via pyrolysis

International Nuclear Information System (INIS)

Abnisa, Faisal; Arami-Niya, Arash; Wan Daud, W.M.A.; Sahu, J.N.; Noor, I.M.

2013-01-01

Highlights: • About 14.72% of the total landmass in Malaysia was used for oil palm plantations. • Oil palm tree residues were pyrolyzed to produce bio-oil and bio-char. • The process was performed at a temperature of 500 °C and reaction time of 60 min. • Characterization of the products was performed. - Abstract: Oil palm tree residues are a rich biomass resource in Malaysia, and it is therefore very important that they be utilized for more beneficial purposes, particularly in the context of the development of biofuels. This paper described the possibility of utilizing oil palm tree residues as biofuels by producing bio-oil and bio-char via pyrolysis. The process was performed in a fixed-bed reactor at a temperature of 500 °C, a nitrogen flow rate of 2 L/min and a reaction time of 60 min. The physical and chemical properties of the products, which are important for biofuel testing, were then characterized. The results showed that the yields of the bio-oil and bio-char obtained from different residues varied within the ranges of 16.58–43.50 wt% and 28.63–36.75 wt%, respectively. The variations in the yields resulted from differences in the relative amounts of cellulose, hemicellulose, lignin, volatiles, fixed carbon, and ash in the samples. The energy density of the bio-char was found to be higher than that of the bio-oil. The highest energy density of the bio-char was obtained from a palm leaf sample (23.32 MJ/kg), while that of the bio-oil was obtained from a frond sample (15.41 MJ/kg)

Utilization possibilites of waste products from fishing and hunting to biogas and bio-oil production in Uummannaq County

DEFF Research Database (Denmark)

Gunnarsdottir, Ragnhildur; Jørgensen, Marianne Willemoes

2008-01-01

In spring 2007 a project was carried out at the Arctic Technology Centre in which research of various possibilities of utilizing waste products from fishing and hunting generated in Uummannaq County was performed. Numerous alternatives were identified in the project, which were weighed against...... the specific conditions that apply in Uummannaq County. The best alternatives were evaluated to be biogas production and utilization of fat from the fish waste to produce bio-oil. The results showed that with the price of energy in Greenland in 2009 of 3,71 DKR per kWh, the waste in Uummannaq County would...... amount to approximately 6 million DKR when using biogas production and 5,7 million DKR when using bio-oil. Compared with the energy used in Uummannaq County today, the biogas production would be able to supply 17 percent of the energy and bio-oil production would cover approximately 16 percent....

Understanding bio-economics

NARCIS (Netherlands)

Patel, M.K.|info:eu-repo/dai/nl/18988097X

2008-01-01

New plants for production of bio-based fuels, chemicals or plastics are being set up at an accelerating pace. However, this transition towards bio-based fuels, feedstocks and chemicals has not come without consequences. Increased demand has pushed up prices of key agricultural products such as maize

Molecular imaging and optical diagnosis from single molecule to human body

International Nuclear Information System (INIS)

Tamura, Mamoru

2006-01-01

The combination of molecular biology and optelectronics has given rise to open a new field, bio-photonics, in the 21st century. In this review, recent advances in several in vitro and in vivo single-molecule detection methods for animals are discussed. The possible applications of optical diagnosis are also included, which are optical mammography, diffuse optical tomography and fluorescence endoscopy. The potential of the light use of in diagnosis is emphasized. (author)

Bio-inspired networking

CERN Document Server

Câmara, Daniel

2015-01-01

Bio-inspired techniques are based on principles, or models, of biological systems. In general, natural systems present remarkable capabilities of resilience and adaptability. In this book, we explore how bio-inspired methods can solve different problems linked to computer networks. Future networks are expected to be autonomous, scalable and adaptive. During millions of years of evolution, nature has developed a number of different systems that present these and other characteristics required for the next generation networks. Indeed, a series of bio-inspired methods have been successfully used to solve the most diverse problems linked to computer networks. This book presents some of these techniques from a theoretical and practical point of view. Discusses the key concepts of bio-inspired networking to aid you in finding efficient networking solutions Delivers examples of techniques both in theoretical concepts and practical applications Helps you apply nature's dynamic resource and task management to your co...

Integration of Organic Light Emitting Diodes and Organic Photodetectors for Lab-on-a-Chip Bio-Detection Systems

Directory of Open Access Journals (Sweden)

Graeme Williams

2014-02-01

Full Text Available The rapid development of microfluidics and lab-on-a-chip (LoC technologies have allowed for the efficient separation and manipulation of various biomaterials, including many diagnostically relevant species. Organic electronics have similarly enjoyed a great deal of research, resulting in tiny, highly efficient, wavelength-selective organic light-emitting diodes (OLEDs and organic photodetectors (OPDs. We consider the blend of these technologies for rapid detection and diagnosis of biological species. In the ideal system, optically active or fluorescently labelled biological species can be probed via light emission from OLEDs, and their subsequent light emission can be detected with OPDs. The relatively low cost and simple fabrication of the organic electronic devices suggests the possibility of disposable test arrays. Further, with full integration, the finalized system can be miniaturized and made simple to use. In this review, we consider the design constraints of OLEDs and OPDs required to achieve fully organic electronic optical bio-detection systems. Current approaches to integrated LoC optical sensing are first discussed. Fully realized OLED- and OPD-specific photoluminescence detection systems from literature are then examined, with a specific focus on their ultimate limits of detection. The review highlights the enormous potential in OLEDs and OPDs for integrated optical sensing, and notes the key avenues of research for cheap and powerful LoC bio-detection systems.

The Hands-On Optics Project: a demonstration of module 3-magnificent magnifications

Science.gov (United States)

Pompea, Stephen M.; Sparks, Robert T.; Walker, Constance E.

2014-07-01

The Hands-On Optics project offers an example of a set of instructional modules that foster active prolonged engagement. Developed by SPIE, OSA, and NOAO through funding from the U.S. National Science Foundation, the modules were originally designed for afterschool settings and museums. However, because they were based on national standards in mathematics, science, and technology, they were easily adapted for use in classrooms. The philosophy and implementation strategies of the six modules will be described as well as lessons learned in training educators. The modules were implementing with the help of optics industry professionals who served as expert volunteers to assist educators. A key element of the modules was that they were developed around an understanding of optics misconceptions and used culminating activities in each module as a form of authentic assessment. Thus student achievement could be measured by evaluating the actual product created by each student in applying key concepts, tools, and applications together at the end of each module. The program used a progression of disciplinary core concepts to build an integrated sequence and crosscutting ideas and practices to infuse the principles of the modern electro-optical field into the modules. Whenever possible, students were encouraged to experiment and to create, and to pursue inquiry-based approaches. The result was a program that had high appeal to regular as well as gifted students.

Pyrolysis of waste animal fats in a fixed-bed reactor: Production and characterization of bio-oil and bio-char

Energy Technology Data Exchange (ETDEWEB)

Ben Hassen-Trabelsi, A., E-mail: aidabenhassen@yahoo.fr [Centre de Recherche et de Technologies de l’Energie (CRTEn), Technopôle Borj-Cédria, B.P 95, 2050, Hammam Lif (Tunisia); Kraiem, T. [Centre de Recherche et de Technologies de l’Energie (CRTEn), Technopôle Borj-Cédria, B.P 95, 2050, Hammam Lif (Tunisia); Département de Géologie, Université de Tunis, 2092, Tunis (Tunisia); Naoui, S. [Centre de Recherche et de Technologies de l’Energie (CRTEn), Technopôle Borj-Cédria, B.P 95, 2050, Hammam Lif (Tunisia); Belayouni, H. [Département de Géologie, Université de Tunis, 2092, Tunis (Tunisia)

2014-01-15

Highlights: • Produced bio-fuels (bio-oil and bio-char) from some animal fatty wastes. • Investigated the effects of main parameters on pyrolysis products distribution. • Determined the suitable conditions for the production of the maximum of bio-oil. • Characterized bio-oils and bio-chars obtained from several animal fatty wastes. - Abstract: Several animal (lamb, poultry and swine) fatty wastes were pyrolyzed under nitrogen, in a laboratory scale fixed-bed reactor and the main products (liquid bio-oil, solid bio-char and syngas) were obtained. The purpose of this study is to produce and characterize bio-oil and bio-char obtained from pyrolysis of animal fatty wastes. The maximum production of bio-oil was achieved at a pyrolysis temperature of 500 °C and a heating rate of 5 °C/min. The chemical (GC–MS analyses) and spectroscopic analyses (FTIR analyses) of bio-oil showed that it is a complex mixture consisting of different classes of organic compounds, i.e., hydrocarbons (alkanes, alkenes, cyclic compounds…etc.), carboxylic acids, aldehydes, ketones, esters,…etc. According to fuel properties, produced bio-oils showed good properties, suitable for its use as an engine fuel or as a potential source for synthetic fuels and chemical feedstock. Obtained bio-chars had low carbon content and high ash content which make them unattractive for as renewable source energy.

Pyrolysis of waste animal fats in a fixed-bed reactor: Production and characterization of bio-oil and bio-char

International Nuclear Information System (INIS)

Ben Hassen-Trabelsi, A.; Kraiem, T.; Naoui, S.; Belayouni, H.

2014-01-01

Highlights: • Produced bio-fuels (bio-oil and bio-char) from some animal fatty wastes. • Investigated the effects of main parameters on pyrolysis products distribution. • Determined the suitable conditions for the production of the maximum of bio-oil. • Characterized bio-oils and bio-chars obtained from several animal fatty wastes. - Abstract: Several animal (lamb, poultry and swine) fatty wastes were pyrolyzed under nitrogen, in a laboratory scale fixed-bed reactor and the main products (liquid bio-oil, solid bio-char and syngas) were obtained. The purpose of this study is to produce and characterize bio-oil and bio-char obtained from pyrolysis of animal fatty wastes. The maximum production of bio-oil was achieved at a pyrolysis temperature of 500 °C and a heating rate of 5 °C/min. The chemical (GC–MS analyses) and spectroscopic analyses (FTIR analyses) of bio-oil showed that it is a complex mixture consisting of different classes of organic compounds, i.e., hydrocarbons (alkanes, alkenes, cyclic compounds…etc.), carboxylic acids, aldehydes, ketones, esters,…etc. According to fuel properties, produced bio-oils showed good properties, suitable for its use as an engine fuel or as a potential source for synthetic fuels and chemical feedstock. Obtained bio-chars had low carbon content and high ash content which make them unattractive for as renewable source energy

Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish.

Directory of Open Access Journals (Sweden)

Teresa Correia

Full Text Available Optical projection tomography (OPT provides a non-invasive 3-D imaging modality that can be applied to longitudinal studies of live disease models, including in zebrafish. Current limitations include the requirement of a minimum number of angular projections for reconstruction of reasonable OPT images using filtered back projection (FBP, which is typically several hundred, leading to acquisition times of several minutes. It is highly desirable to decrease the number of required angular projections to decrease both the total acquisition time and the light dose to the sample. This is particularly important to enable longitudinal studies, which involve measurements of the same fish at different time points. In this work, we demonstrate that the use of an iterative algorithm to reconstruct sparsely sampled OPT data sets can provide useful 3-D images with 50 or fewer projections, thereby significantly decreasing the minimum acquisition time and light dose while maintaining image quality. A transgenic zebrafish embryo with fluorescent labelling of the vasculature was imaged to acquire densely sampled (800 projections and under-sampled data sets of transmitted and fluorescence projection images. The under-sampled OPT data sets were reconstructed using an iterative total variation-based image reconstruction algorithm and compared against FBP reconstructions of the densely sampled data sets. To illustrate the potential for quantitative analysis following rapid OPT data acquisition, a Hessian-based method was applied to automatically segment the reconstructed images to select the vasculature network. Results showed that 3-D images of the zebrafish embryo and its vasculature of sufficient visual quality for quantitative analysis can be reconstructed using the iterative algorithm from only 32 projections-achieving up to 28 times improvement in imaging speed and leading to total acquisition times of a few seconds.

A biomechanical modeling-guided simultaneous motion estimation and image reconstruction technique (SMEIR-Bio) for 4D-CBCT reconstruction

Science.gov (United States)

Huang, Xiaokun; Zhang, You; Wang, Jing

2018-02-01

Reconstructing four-dimensional cone-beam computed tomography (4D-CBCT) images directly from respiratory phase-sorted traditional 3D-CBCT projections can capture target motion trajectory, reduce motion artifacts, and reduce imaging dose and time. However, the limited numbers of projections in each phase after phase-sorting decreases CBCT image quality under traditional reconstruction techniques. To address this problem, we developed a simultaneous motion estimation and image reconstruction (SMEIR) algorithm, an iterative method that can reconstruct higher quality 4D-CBCT images from limited projections using an inter-phase intensity-driven motion model. However, the accuracy of the intensity-driven motion model is limited in regions with fine details whose quality is degraded due to insufficient projection number, which consequently degrades the reconstructed image quality in corresponding regions. In this study, we developed a new 4D-CBCT reconstruction algorithm by introducing biomechanical modeling into SMEIR (SMEIR-Bio) to boost the accuracy of the motion model in regions with small fine structures. The biomechanical modeling uses tetrahedral meshes to model organs of interest and solves internal organ motion using tissue elasticity parameters and mesh boundary conditions. This physics-driven approach enhances the accuracy of solved motion in the organ’s fine structures regions. This study used 11 lung patient cases to evaluate the performance of SMEIR-Bio, making both qualitative and quantitative comparisons between SMEIR-Bio, SMEIR, and the algebraic reconstruction technique with total variation regularization (ART-TV). The reconstruction results suggest that SMEIR-Bio improves the motion model’s accuracy in regions containing small fine details, which consequently enhances the accuracy and quality of the reconstructed 4D-CBCT images.

Maxillary sinus floor augmentation with Bio-Oss or Bio-Oss mixed with autogenous bone as graft in animals

DEFF Research Database (Denmark)

Jensen, T; Schou, S; Stavropoulos, Andreas

2012-01-01

The objective of the present systematic review was to test the hypothesis of no differences between the use of Bio-Oss or Bio-Oss mixed with autogenous bone as graft for maxillary sinus floor augmentation (MSFA) applying the lateral window technique, as evaluated in animals. A MEDLINE (Pub...... of the graft improved significantly with increased proportion of Bio-Oss. Bone regeneration, bone-to-implant contact (BIC), biomechanical implant test values, and biodegradation of Bio-Oss after MSFA with Bio-Oss or Bio-Oss mixed with autogenous bone have never been compared within the same study in animals....... Thus, the hypothesis of no differences between the use of Bio-Oss and Bio-Oss mixed with autogenous bone as graft for MSFA could neither be confirmed nor rejected based on existing animal studies....

Navigating the Bio-Politics of Childhood

Science.gov (United States)

Lee, Nick; Motzkau, Johanna

2011-01-01

Childhood research has long shared a bio-political terrain with state agencies in which children figure primarily as "human futures". In the 20th century bio-social dualism helped to make that terrain navigable by researchers, but, as life processes increasingly become key sites of bio-political action, bio-social dualism is becoming…

MO-AB-BRA-09: Development and Evaluation of a Biomechanical Modeling-Assisted CBCT Reconstruction Technique (Bio-Recon)

Energy Technology Data Exchange (ETDEWEB)

Zhang, Y; Nasehi Tehrani, J; Wang, J [UT Southwestern Medical Center, Dallas, TX (United States)

2016-06-15

Purpose: To develop a Bio-recon technique by incorporating the biomechanical properties of anatomical structures into the deformation-based CBCT reconstruction process. Methods: Bio-recon reconstructs the CBCT by deforming a prior high-quality CT/CBCT using a deformation-vector-field (DVF). The DVF is solved through two alternating steps: 2D–3D deformation and finite-element-analysis based biomechanical modeling. 2D–3D deformation optimizes the DVF through an ‘intensity-driven’ approach, which updates the DVF to minimize intensity mismatches between the acquired projections and the simulated projections from the deformed CBCT. In contrast, biomechanical modeling optimizes the DVF through a ‘biomechanical-feature-driven’ approach, which updates the DVF based on the biophysical properties of anatomical structures. In general, Biorecon extracts the 2D–3D deformation-optimized DVF at high-contrast structure boundaries, and uses it as the boundary condition to drive biomechanical modeling to optimize the overall DVF, especially at low-contrast regions. The optimized DVF is fed back into the 2D–3D deformation for further optimization, which forms an iterative loop. The efficacy of Bio-recon was evaluated on 11 lung patient cases, each with a prior CT and a new CT. Cone-beam projections were generated from the new CTs to reconstruct CBCTs, which were compared with the original new CTs for evaluation. 872 anatomical landmarks were also manually identified by a clinician on both the prior and new CTs to track the lung motion, which was used to evaluate the DVF accuracy. Results: Using 10 projections for reconstruction, the average (± s.d.) relative errors of reconstructed CBCTs by the clinical FDK technique, the 2D–3D deformation-only technique and Bio-recon were 46.5±5.9%, 12.0±2.3% and 10.4±1.3%, respectively. The average residual errors of DVF-tracked landmark motion by the 2D–3D deformation-only technique and Bio-recon were 5.6±4.3mm and 3.1±2

MO-AB-BRA-09: Development and Evaluation of a Biomechanical Modeling-Assisted CBCT Reconstruction Technique (Bio-Recon)

International Nuclear Information System (INIS)

Zhang, Y; Nasehi Tehrani, J; Wang, J

2016-01-01

Purpose: To develop a Bio-recon technique by incorporating the biomechanical properties of anatomical structures into the deformation-based CBCT reconstruction process. Methods: Bio-recon reconstructs the CBCT by deforming a prior high-quality CT/CBCT using a deformation-vector-field (DVF). The DVF is solved through two alternating steps: 2D–3D deformation and finite-element-analysis based biomechanical modeling. 2D–3D deformation optimizes the DVF through an ‘intensity-driven’ approach, which updates the DVF to minimize intensity mismatches between the acquired projections and the simulated projections from the deformed CBCT. In contrast, biomechanical modeling optimizes the DVF through a ‘biomechanical-feature-driven’ approach, which updates the DVF based on the biophysical properties of anatomical structures. In general, Biorecon extracts the 2D–3D deformation-optimized DVF at high-contrast structure boundaries, and uses it as the boundary condition to drive biomechanical modeling to optimize the overall DVF, especially at low-contrast regions. The optimized DVF is fed back into the 2D–3D deformation for further optimization, which forms an iterative loop. The efficacy of Bio-recon was evaluated on 11 lung patient cases, each with a prior CT and a new CT. Cone-beam projections were generated from the new CTs to reconstruct CBCTs, which were compared with the original new CTs for evaluation. 872 anatomical landmarks were also manually identified by a clinician on both the prior and new CTs to track the lung motion, which was used to evaluate the DVF accuracy. Results: Using 10 projections for reconstruction, the average (± s.d.) relative errors of reconstructed CBCTs by the clinical FDK technique, the 2D–3D deformation-only technique and Bio-recon were 46.5±5.9%, 12.0±2.3% and 10.4±1.3%, respectively. The average residual errors of DVF-tracked landmark motion by the 2D–3D deformation-only technique and Bio-recon were 5.6±4.3mm and 3.1±2

Plasma thermal conversion of bio-oil for hydrogen production

International Nuclear Information System (INIS)

Guenadou, David; Lorcet, Helene; Peybernes, Jean; Catoire, Laurent; Osmont, Antoine; Gokalp, Iskender

2012-01-01

Numerous processes exist or are proposed for the energetic conversion of biomass. The use of thermal plasma is proposed in the frame of the GALACSY project for the conversion of bio-oil to hydrogen and carbon monoxide. For this purpose, an experimental apparatus has been built. The feasibility of this conversion at very high temperature, as encountered in thermal plasma, is examined both experimentally and numerically. This zero dimensional study tends to show that a high temperature (around 2500 K or above) is needed to ensure a high yield of hydrogen (about 50 mol%) and about 95 mol% of CO+H 2 . Predicted CO+H 2 yield and CO/H 2 ratio are consistent with measurements. It is also expected that the formation of particles and tars is hampered. Thermodynamic data of selected bio-oil components are provided in the CHEMKINNASA format. (authors)

Nano-Structures for Optics and Photonics: Optical Strategies for Enhancing

CERN Document Server

Collins, John; Silvestri, Luciano

2015-01-01

The contributions in this volume were presented at a NATO Advanced Study Institute held in Erice, Italy, 4-19 July 2013. Many aspects of important research into nanophotonics, plasmonics, semiconductor materials and devices, instrumentation for bio sensing to name just a few, are covered in depth in this volume.  The growing connection between optics and electronics, due to the increasing important role plaid by semiconductor materials and devices, find their expression in the term photonics, which also reflects the importance of the photon aspect of light in the description of the performance of several optical systems. Nano-structures have unique capabilities that allow the enhanced performance of processes of interest in optical and photonic devices. In particular these structures permit the nanoscale manipulation of photons, electrons and atoms; they represent a very hot topic of research and are relevant to many devices and applications. The various subjects bridge over the disciplines of physics, biolo...

CONCEPTUAL DESIGN ASSESSMENT FOR THE CO-FIRING OF BIO-REFINERY SUPPLIED LIGNIN PROJECT

International Nuclear Information System (INIS)

Ted Berglund; Jeffrey T. Ranney; Carol L. Babb; Jacqueline G. Broder

2001-01-01

The major aspects of this project are proceeding toward completion. Prior to this quarter, design criteria, tentative site selection, facility layout, and preliminary facility cost estimates have been completed and issued for review. Processing of bio-solids was completed, providing material for the pilot operations. Pilot facility design, equipment selection, and modification were completed during the fourth quarter of 2000. Initial pilot facility shakedown was completed during the fourth quarter. After some unavoidable delays, a suitable representative supply of municipal solid waste (MSW) feed material was procured. During this quarter (first quarter of 2001), shredding of the feed material was completed and final feed conditioning was completed. Pilot facility hydrolysis production was completed to produce lignin for co-fire testing. Pilot facility modifications continued to improve facility operations and performance during the first quarter of 2001. Samples of the co-fire fuel material were sent to the co-fire facility for evaluation. The TVA-Colbert facility has neared completion of the task to evaluate the co-location of the Masada facility on the operation of the power generation facility. The TVA-Colbert fossil plant is fully capable of providing a reliable steam supply. The preferred steam supply connection points and steam pipeline routing have been identified. The environmental review of the pipeline routing has been completed and no major impacts have been identified. Detailed assessment of steam export impacts on the Colbert boiler system have been completed and a cost estimate for steam supply system is being developed

Projective-anticipating, projective and projective-lag synchronization of chaotic systems with time-varying delays

International Nuclear Information System (INIS)

Feng Cunfang; Guan Wei; Wang Yinghai

2013-01-01

We investigate different types of projective (projective-anticipating, projective and projective-lag) synchronization in unidirectionally nonlinearly coupled time-delayed chaotic systems with variable time delays. Based on the Krasovskii–Lyapunov approach, we find both the existence and sufficient stability conditions, using a general class of time-delayed chaotic systems related to optical bistable or hybrid optical bistable devices. Our method has the advantage that it requires only one nonlinearly coupled term to achieve different types of projective synchronization in time-delayed chaotic systems with variable time delays. Compared with other existing works, our result provides an easy way to achieve projective-anticipating, projective and projective-lag synchronization. Numerical simulations of the Ikeda system are given to demonstrate the validity of the proposed method. (paper)

Nanoscale electric and magnetic optical vector fields: mapping & injection

NARCIS (Netherlands)

le Feber, Boris

2015-01-01

Nanophotonic structures, which offer a sub-wavelength control over light and nearby emitters, promise to advance, for example, our ability to harvest light, process information and detect (bio-) chemical compounds. In general, the optical field distributions near nanophotonic structures are much

Oxidative modifications, mitochondrial dysfunction, and impaired protein degradation in Parkinson's disease: how neurons are lost in the Bermuda triangle

Directory of Open Access Journals (Sweden)

Malkus Kristen A

2009-06-01

Full Text Available Abstract While numerous hypotheses have been proposed to explain the molecular mechanisms underlying the pathogenesis of neurodegenerative diseases, the theory of oxidative stress has received considerable support. Although many correlations have been established and encouraging evidence has been obtained, conclusive proof of causation for the oxidative stress hypothesis is lacking and potential cures have not emerged. Therefore it is likely that other factors, possibly in coordination with oxidative stress, contribute to neuron death. Using Parkinson's disease (PD as the paradigm, this review explores the hypothesis that oxidative modifications, mitochondrial functional disruption, and impairment of protein degradation constitute three interrelated molecular pathways that execute neuron death. These intertwined events are the consequence of environmental exposure, genetic factors, and endogenous risks and constitute a "Bermuda triangle" that may be considered the underlying cause of neurodegenerative pathogenesis.

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

Science.gov (United States)

Kim, Sun; Chatr-aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Wilbur, W. John; Comeau, Donald C.; Dolinski, Kara; Tyers, Mike

2017-01-01

A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein–protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

Wireless and wireline service convergence in next generation optical access networks - the FP7 WISCON project

DEFF Research Database (Denmark)

Vegas Olmos, Juan José; Pang, Xiaodan; Lebedev, Alexander

2014-01-01

The next generation of information technology demands both high capacity and mobility for applications such as high speed wireless access capable of supporting broadband services. The transport of wireless and wireline signals is converging into a common telecommunication infrastructure....... In this paper, we will present the Marie Curie Framework Program 7 project “Wireless and wireline service convergence in next generation optical access networks” (WISCON), which focuses on the conception and study of novel architectures for wavelength-division-multiplexing (WDM) optical multi-modulation format...

The BioMart community portal: an innovative alternative to large, centralized data repositories

Science.gov (United States)

The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biologi...

Realising the European network of bio-dosimetry (RENEB)

International Nuclear Information System (INIS)

Kulka, U.; Ainsbury, L.; Atkinson, M.; Barquinero, J. F.; Barrios, L.; Beinke, C.; Bognar, G.; Cucu, A.; Darroudi, F.; Fattibene, P.; Gil, O.; Gregoire, E.; Hadjidekova, V.; Haghdoost, S.; Herranz, R.; Jaworska, A.; Lindholm, C.; Mkacher, R.; Moertl, S.; Montoro, A.; Moquet, J.; Moreno, M.; Ogbazghi, A.; Oestreicher, U.; Palitti, F.; Pantelias, G.; Popescu, I.; Prieto, M. J.; Romm, H.; Rothkamm, K.; Sabatier, L.; Sommer, S.; Terzoudi, G.; Testa, A.; Thierens, H.; Trompier, F.; Turai, I.; Vandersickel, V.; Vaz, P.; Voisin, P.; Vral, A.; Ugletveit, F.; Woda, C.; Wojcik, A.

2012-01-01

In Europe, a network for biological dosimetry has been created to strengthen the emergency preparedness and response capabilities in case of a large-scale nuclear accident or radiological emergency. Through the RENEB (Realising the European Network of bio-dosimetry) project, 23 experienced laboratories from 16 European countries will establish a sustainable network for rapid, comprehensive and standardised bio-dosimetry provision that would be urgently required in an emergency situation on European ground. The foundation of the network is formed by five main pillars: (1) the ad hoc operational basis, (2) a basis of future developments, (3) an effective quality-management system, (4) arrangements to guarantee long-term sustainability and (5) awareness of the existence of RENEB. RENEB will thus provide a mechanism for quick, efficient and reliable support within the European radiation emergency management. The scientific basis of RENEB will concurrently contribute to increased safety in the field of radiation protection. (authors)

Bio nitrate Project: a new technology for water nitrate elimination by means of ionic exchange resins; Proyecto Bionitrate: una nueva tecnologia para la eliminacion de nitratos en aguas mediante resinas de intercambio ionico

Energy Technology Data Exchange (ETDEWEB)

Arellano Ortiz, J.

2009-07-01

The use of ion exchange resins for nitrate elimination from water generates a waste containing a sodium chloride mixture plus the retained nitrates. this waste must be correctly disposed. In this project, the resin ionic form is modified to be regenerated with other compounds, different from the common salt, which are interesting because of the presence of mineral nutrition. So, with Bio nitrate Project, nitrates are recovered and the regeneration waste is apt to be use as fertilizer, for agricultural uses, or as complementary contribution of nutrients in biological water treatment. (Author) 27 refs.

Optical aurora detectors: using natural optics to motivate education and outreach

Science.gov (United States)

Shaw, Joseph A.; Way, Jesse M.; Pust, Nathan J.; Nugent, Paul W.; Coate, Hans; Balster, Daniel

2009-06-01

Natural optical phenomena enjoy a level of interest sufficiently high among a wide array of people to provide ideal education and outreach opportunities. The aurora promotes particularly high interest, perhaps because of its relative rarity in the areas of the world where most people live. A project is being conducted at Montana State University to use common interest and curiosity about auroras to motivate learning and outreach through the design and deployment of optical sensor systems that detect the presence of an auroral display and send cell phone messages to alert interested people. Project participants learn about the physics and optics of the aurora, basic principles of optical system design, radiometric calculations and calibrations, electro-optical detectors, electronics, embedded computer systems, and computer software. The project is moving into a stage where it will provide greatly expanded outreach and education opportunities as optical aurora detector kits are created and disbursed to colleges around our region.

Bio-ethanol

DEFF Research Database (Denmark)

Wenzel, Henrik

2007-01-01

, there is not enough biomass for 'everyone', not physically and not in terms of money to promote its use. This leads to the conclusion that any use of biomass for energy purposes will have to compare to the lost opportunity of using it for something else. In this perspective, the choice to use biomass for bio......-ethanol production will not lead to reduction but to increase in CO2 emission and fossil fuel dependency. Both first and second generation bio-ethanol suffer from a biomass-to-ethanol energy conversion efficiency as low as 30-40 %, and moreover external fossil fuels are used to run the conversion. There is only......, but they do not improve the energy balance enough for bio-ethanol to compete with alternative uses of the biomass. When using biomass to substitute fossil fuels in heat & power production, a close to 100% substitution efficiency is achieved. The best alternative for CO2 reduction and oil saving is, therefore...

Bio diesel, v. 15(58)

International Nuclear Information System (INIS)

Gicheva, Ljubitsa

2007-01-01

The history of bio-fuels/bio-diesel is more political and economical than it is technological. The technology of the production is the same as it was 200 years ago. The economy closed the usage of bio-fuels in the middies of the 20 Th century and put it back on the agenda of the world economy at the beginning of the 21 st century. With price of more then 70 US$ per barrel of grudge oil, production and usage of bio-fuels becomes more economical category rather than political and ecological. If we, additionally, add secondary, yet nowadays very important factors, as ecological protection, recycling the emission of poisonous gasses, exploitation of agro sector, then the reincarnation of bio-fuels is very interesting, and for Macedonia a potentially strategic category. The basics of the biography is to follow in the article paying special attention on the characteristics, standards, production, processing and usage of the bio-diesel fuel as well as the blended B20 and B5. (Author)

Bio diesel, v. 15(59)

International Nuclear Information System (INIS)

Gicheva, Ljubitsa

2007-01-01

The history of bio-fuels/bio-diesel is more political and economical than it is technological. The technology of the production is the same as it was 200 years ago. The economy closed the usage of bio-fuels in the middies of the 20 Th century and put it back on the agenda of the world economy at the beginning of the 21 st century. With price of more then 70 US$ per barrel of grudge oil, production and usage of bio-fuels becomes more economical category rather than political and ecological. If we, additionally, add secondary, yet nowadays very important factors, as ecological protection, recycling the emission of poisonous gasses, exploitation of agro sector, then the reincarnation of bio-fuels is very interesting, and for Macedonia a potentially strategic category. The basics of the biography is to follow in the article paying special attention on the characteristics, standards, production, processing and usage of the bio-diesel fuel as well as the blended B20 and B5. (Author)

The basis for a Platform Bio-Energy. Combining forces for the Dutch bio-energy business

International Nuclear Information System (INIS)

Van Halen, C.J.G.

1998-02-01

It appears that there is a need for a community of interests in the field of bio-energy to solve numerous problems and to answer many questions with respect to the development of businesses that are active in the field of bio-energy. The title study was carried out in the third and fourth quarter of 1997 by means of surveys and depth interviews among representatives of bio-energy businesses, interest groups and research institutes. The majority of the respondents supports the foundation of the Platform Bio-Energy and suggests many different activities

Biorefinery Demonstration Project Final Progress Report

Energy Technology Data Exchange (ETDEWEB)

Lee, David [University of Georgia Research Foundation, Inc., Athens, GA (United States)

2015-10-20

In this project we focused on various aspects of biorefinery technology development including algal-biorefinery technology, thermochemical conversion of biomass to bio-oils and biochar; we tested characteristics and applications of biochars and evaluated nutrient cycling with wastewater treatment by the coupling of algal culture systems and anaerobic digestion. Key results include a method for reducing water content of bio-oil through atomized alcohol addition. The effect included increasing the pH and reducing the viscosity and cloud point of the bio-oil. Low input biochar production systems were evaluated via literature reviews and direct experimental work. Additionally, emissions were evaluated and three biochar systems were compared via a life cycle analysis. Attached growth systems for both algal cultivation and algal harvesting were found to be superior to suspended growth cultures. Nutrient requirements for algal cultivation could be obtained by the recycling of anaerobic digester effluents, thus experimentally showing that these two systems could be directly coupled. Twenty-two journal articles and six intellectual property applications resulted from the cumulative work that this project contributed to programmatically.

Feasibility Study for the Use of Green, Bio-Based, Efficient Reactive Sorbent Material to Neutralize Chemical Warfare Agents

Science.gov (United States)

2012-08-02

REPORT Feasibility study for the use of green, bio-based, efficient reactive sorbent material to neutralize chemical warfare agents 14. ABSTRACT 16...way cellulose, lignin and hemicelluloses interact as well as whole wood dissolution occurs in ILs. The present project was conducted to 1. REPORT...Feasibility study for the use of green, bio-based, efficient reactive sorbent material to neutralize chemical warfare agents Report Title ABSTRACT Over the

Nanoscopic Electrofocusing for Bio-Nanoelectronic Devices

Science.gov (United States)

Lakshmanan, Shanmugamurthy

2015-01-01

The ability to arrange precisely designed patterns of nanoparticles into a desired spatial configuration is the key to creating novel nanoscale devices that take advantage of the unique properties of nanomaterials. While two-dimensional arrays of nanoparticles have been demonstrated successfully by various techniques, a controlled way of building ordered arrays of three-dimensional (3D) nanoparticle structures remains challenging. This book describes a new technique called the 'nanoscopic lens' which is able to produce a variety of 3D nano-structures in a controlled manner. This ebook describes the nanoscopic lens technique and how it can serve as the foundation for device development that is not limited to a variety of optical, magnetic and electronic devices, but can also create a wide range of bio-nanoelectronic devices.

A route for direct retinal input to the preoptic hypothalamus: dendritic projections into the optic chiasm.

Science.gov (United States)

Silver, J; Brand, S

1979-07-01

With the use of Golgi, horseradish peroxidase, and electron microscopic techniques, neurons within a broad region of the preoptic hypothalamus of the mouse were shown to have dendrites that projected well into the depths of the optic chiasm. Further experimental and ultrastructural investigation demonstrated synapses between these dendrites and retinal axonal boutons within the chiasm. All synapses located in the chiasm were classified as Gray's type I. The possible function of these dendritic projections is discussed.

A study of the use of bio-based technologies (lubricant and grease) in rail applications.

Science.gov (United States)

2014-05-01

The objective of the project was to study the efficacy of using bio-based lubricant and grease technologies in railroad applications : (locomotives and maintenance of way equipment). Several commercially available rail curve greases were identified a...

Spectral Discrimination of Fine and Coarse Mode Aerosol Optical Depth from AERONET Direct Sun Data of Singapore and South-East Asia

Science.gov (United States)

Salinas Cortijo, S.; Chew, B.; Liew, S.

2009-12-01

Aerosol optical depth combined with the Angstrom exponent and its derivative, are often used as a qualitative indicator of aerosol particle size, with Angstrom exp. values greater than 2 indicating small (fine mode) particles associated with urban pollution and bio-mass burning. Around this region, forest fires are a regular occurrence during the dry season, specially near the large land masses of Sumatra and Borneo. The practice of clearing land by burning the primary and sometimes secondary forest, results in a smog-like haze covering large areas of regional cities such as cities Singapore, Kuala Lumpur and sometimes the south of Thailand, often reducing visibility and increasing health problems for the local population. In Singapore, the sources of aerosols are mostly from fossil fuel burning (energy stations, incinerators, urban transport etc.) and from the industrial and urban areas. The proximity to the sea adds a possible oceanic source. However, as stated above and depending on the time of the year, there can be a strong bio-mass component coming from forest fires from various regions of the neighboring countries. Bio-mass related aerosol particles are typically characterized by showing a large optical depth and small, sub-micron particle size distributions. In this work, we analyze three years of direct Sun measurements performed with a multi-channel Cimel Sun-Photometer (part of the AERONET network) located at our site. In order to identify bio-mass burning events in this region, we perform a spectral discrimination between coarse and fine mode optical depth; subsequently, the fine mode parameters such as optical depth, optical ratio and fine mode Angstrom exponents (and its derivative) are used to identify possible bio-mass related events within the data set.

„Bio-politics Reflexes” or something about what happens with Bio-politics today

Directory of Open Access Journals (Sweden)

Viorella Manolache

2013-04-01

Full Text Available Under the pressure dictated by Western modernity movements, life finally enters within strategic (long term relationships circuit. The present study establishes that, bio-politics and bio-power denounces the paradigm of politicization of the biological life. Foucault’s late writings confirm the subordination of bio-politics to the technologies of power, which integrate / reduce life to biological continuity of the species, to the objectification of individual body or investigation of self-techniques, that would allow (beyond the corset of the institutional, the (re affirmation of subjectivity as a force or a form of resistance. The present reactivation of the bio model establishes that we cannot evade Foucault’s view, in which, the biology- meeting – politics confirms that, none of the terms no longer retains its original meaning.

The influence of surface microstructure and chemical composition on corrosion behaviour in fuel-grade bio-ethanol of low-alloy steel modified by plasma nitro-carburizing and post-oxidizing

Science.gov (United States)

Boniatti, Rosiana; Bandeira, Aline L.; Crespi, Ângela E.; Aguzzoli, Cesar; Baumvol, Israel J. R.; Figueroa, Carlos A.

2013-09-01

The interaction of bio-ethanol on steel surfaces modified by plasma-assisted diffusion technologies is studied for the first time. The influence of surface microstructure and chemical composition on corrosion behaviour of AISI 4140 low-alloy steel in fuel-grade bio-ethanol was investigated. The steel surfaces were modified by plasma nitro-carburizing followed plasma oxidizing. X-ray diffraction, scanning electron microscopy, optical microscopy, X-ray dispersive spectroscopy, and glow-discharge optical emission spectroscopy were used to characterize the modified surface before and after immersion tests in bio-ethanol up to 77 days. The main corrosion mechanism is pit formation. The pit density and pit size were measured in order to quantify the corrosion resistance which was found to depend more strongly on microstructure and morphology of the oxide layer than on its thickness. The best corrosion protection was observed for samples post-oxidized at 480 °C and 90 min.

The influence of surface microstructure and chemical composition on corrosion behaviour in fuel-grade bio-ethanol of low-alloy steel modified by plasma nitro-carburizing and post-oxidizing

International Nuclear Information System (INIS)

Boniatti, Rosiana; Bandeira, Aline L.; Crespi, Ângela E.; Aguzzoli, Cesar; Baumvol, Israel J.R.; Figueroa, Carlos A.

2013-01-01

The interaction of bio-ethanol on steel surfaces modified by plasma-assisted diffusion technologies is studied for the first time. The influence of surface microstructure and chemical composition on corrosion behaviour of AISI 4140 low-alloy steel in fuel-grade bio-ethanol was investigated. The steel surfaces were modified by plasma nitro-carburizing followed plasma oxidizing. X-ray diffraction, scanning electron microscopy, optical microscopy, X-ray dispersive spectroscopy, and glow-discharge optical emission spectroscopy were used to characterize the modified surface before and after immersion tests in bio-ethanol up to 77 days. The main corrosion mechanism is pit formation. The pit density and pit size were measured in order to quantify the corrosion resistance which was found to depend more strongly on microstructure and morphology of the oxide layer than on its thickness. The best corrosion protection was observed for samples post-oxidized at 480 °C and 90 min.

Bio fertilizer Application in a Fertigation System

International Nuclear Information System (INIS)

Ahmad Nazrul Abd Wahid; Latiffah Noordin; Hoe, P.C.K.

2011-01-01

Bio fertilizers contain live beneficial microorganisms that provide nutrients and other benefits to crops. At present, bio fertilizers can be found in solid and liquid forms. Liquid bio fertilizer can be one of the alternatives to chemical fertilizers and pesticides. Liquid bio fertilizer is produced through culturing of microorganisms that are known to have specific capabilities in helping plant growth. However, application of bio fertilizers in the form of solution is more tedious than that of solid bio fertilizers, which can be applied directly to plants, whereas the liquid form requires several stages of preparation before it can be applied to crops. In Malaysian Nuclear Agency, a study on the distribution of liquid bio fertilizers to crops through the fertigation system has been conducted. In Malaysia, this study has not been conducted in depth, since the present fertigation system is associated to delivery of solubilised mineral fertilizers. This paper discusses the application of liquid bio fertilizers through a fertigation system. Discussions cover technical aspects of bio fertilizer preparation and its application via the said system. Tomato plant was used as test crop to determine the capability and efficiency of bio fertilizer application through the fertigation system. (author)

Unraveling Dutch citizens' perceptions on the bio-based economy : The case of bioplastics, bio-jetfuels and small-scale bio-refineries

NARCIS (Netherlands)

Lynch, Durwin H J; Klaassen, Pim; Broerse, Jacqueline E W

2017-01-01

Little is known about how citizens perceive the transition towards a bio-based economy (BBE), despite the fact that they are one of the most important actors in this transition. Citizens' perceptions of bio-based innovations can support policy-makers to improve the quality of decision-making and the

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.

Science.gov (United States)

Islamaj Dogan, Rezarta; Kim, Sun; Chatr-Aryamontri, Andrew; Chang, Christie S; Oughtred, Rose; Rust, Jennifer; Wilbur, W John; Comeau, Donald C; Dolinski, Kara; Tyers, Mike

2017-01-01

A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein-protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

Secchi depth analysis using bio-optical parameters measured in the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Suresh, T.; Naik, P.; Bandishte, M.; Desa, E.; Mascarenhas, A.A.M.Q.; Matondkar, S.G.P.

spatial and temporal variability of Secchi depth and their dependence on the optical properties beam attenuation and diffuse attenuation the biological parameter of Chlorophyll. The in-situ measured inherent and apparent optical properties have been used...

Technological Cooperation Networks at Bio-Manguinhos: the Role of Information and Communication Technologies

Directory of Open Access Journals (Sweden)

Lázaro Pereira de Oliveira

2015-01-01

Full Text Available This article identifies and discusses the contribution of information and communication technologies (ICTs to the technological cooperation projects of Bio-Manguinhos, a pharmaceutical manufacturer that belongs to Osvaldo Cruz Foundation (FIOCRUZ, responsible for producing vaccines, reagents and biopharmaceuticals, with priority on meeting the needs of the Brazilian public health system. It is a case study with a qualitative approach for descriptive and explanatory purposes. The data were collected from 14 interviews conducted with managers of research and development (R&D projects with high relevance to the organization. The results allow concluding that the ICTs requiring greater interdependence between partners and two-way knowledge flows have not yet been used. They also show the importance of closer cooperation between the information technology (IT and R&D areas. A future positioning of Bio-Manguinhos as a technological center focused on discovery and sale of new active ingredients can favor the use of tools that promote greater integration between the partners of technology cooperation networks.

Three-dimensional bio-printing.

Science.gov (United States)

Gu, Qi; Hao, Jie; Lu, YangJie; Wang, Liu; Wallace, Gordon G; Zhou, Qi

2015-05-01

Three-dimensional (3D) printing technology has been widely used in various manufacturing operations including automotive, defence and space industries. 3D printing has the advantages of personalization, flexibility and high resolution, and is therefore becoming increasingly visible in the high-tech fields. Three-dimensional bio-printing technology also holds promise for future use in medical applications. At present 3D bio-printing is mainly used for simulating and reconstructing some hard tissues or for preparing drug-delivery systems in the medical area. The fabrication of 3D structures with living cells and bioactive moieties spatially distributed throughout will be realisable. Fabrication of complex tissues and organs is still at the exploratory stage. This review summarize the development of 3D bio-printing and its potential in medical applications, as well as discussing the current challenges faced by 3D bio-printing.

Mississippi State University Cooling, Heating, and Power (Micro-CHP) and Bio-Fuel Center

Energy Technology Data Exchange (ETDEWEB)

Mago, Pedro [Mississippi State Univ., Mississippi State, MS (United States); Newell, LeLe [Mississippi State Univ., Mississippi State, MS (United States)

2014-01-31

Between 2008 and 2014, the U.S. Department of Energy funded the MSU Micro-CHP and Bio-Fuel Center located at Mississippi State University. The overall objective of this project was to enable micro-CHP (micro-combined heat and power) utilization, to facilitate and promote the use of CHP systems and to educate architects, engineers, and agricultural producers and scientists on the benefits of CHP systems. Therefore, the work of the Center focused on the three areas: CHP system modeling and optimization, outreach, and research. In general, the results obtained from this project demonstrated that CHP systems are attractive because they can provide energy, environmental, and economic benefits. Some of these benefits include the potential to reduce operational cost, carbon dioxide emissions, primary energy consumption, and power reliability during electric grid disruptions. The knowledge disseminated in numerous journal and conference papers from the outcomes of this project is beneficial to engineers, architects, agricultural producers, scientists and the public in general who are interested in CHP technology and applications. In addition, more than 48 graduate students and 23 undergraduate students, benefited from the training and research performed in the MSU Micro-CHP and Bio-Fuel Center.

A Systems Approach to Bio-Oil Stabilization - Final Technical Report

Energy Technology Data Exchange (ETDEWEB)

Brown, Robert C; Meyer, Terrence; Fox, Rodney; Submramaniam, Shankar; Shanks, Brent; Smith, Ryan G

2011-12-23

The objective of this project is to develop practical, cost effective methods for stabilizing biomass-derived fast pyrolysis oil for at least six months of storage under ambient conditions. The U.S. Department of Energy has targeted three strategies for stabilizing bio-oils: (1) reducing the oxygen content of the organic compounds comprising pyrolysis oil; (2) removal of carboxylic acid groups such that the total acid number (TAN) of the pyrolysis oil is dramatically reduced; and (3) reducing the charcoal content, which contains alkali metals known to catalyze reactions that increase the viscosity of bio-oil. Alkali and alkaline earth metals (AAEM), are known to catalyze decomposition reactions of biomass carbohydrates to produce light oxygenates that destabilize the resulting bio-oil. Methods envisioned to prevent the AAEM from reaction with the biomass carbohydrates include washing the AAEM out of the biomass with water or dilute acid or infusing an acid catalyst to passivate the AAEM. Infusion of acids into the feedstock to convert all of the AAEM to salts which are stable at pyrolysis temperatures proved to be a much more economically feasible process. Our results from pyrolyzing acid infused biomass showed increases in the yield of anhydrosugars by greater than 300% while greatly reducing the yield of light oxygenates that are known to destabilize bio-oil. Particulate matter can interfere with combustion or catalytic processing of either syngas or bio-oil. It also is thought to catalyze the polymerization of bio-oil, which increases the viscosity of bio-oil over time. High temperature bag houses, ceramic candle filters, and moving bed granular filters have been variously suggested for syngas cleaning at elevated temperatures. High temperature filtration of bio-oil vapors has also been suggested by the National Renewable Energy Laboratory although there remain technical challenges to this approach. The fast pyrolysis of biomass yields three main organic

Energetic and Environmental Impacts Related to Transport and Assembling Processes in ABiogas Production Plant from Marine Macroalgae (FP7 Project BioWALK4Biofuels)

Science.gov (United States)

Cappelli, Andrea; Gigli, Emanuele; Muzi, Luca; Renda, Roberto; Simoni, Silvano

2010-01-01

GHG emissions, eutrophication and energy dependence are problems that the EU has to face in the near future. The BioWALK4Biofuels project aims to find a common response to these challenges, taking advantage of spontaneous biological processes: the growth of algae and anaerobic digestion of biomass. This project is being built thanks to European funding under the 7th Framework Programme. To evaluate the results obtained, a first LCA study was carried out that, as regards the data on infrastructure and on the assembly of the plant, refers to data supplied by manufacturers, while the study of algal growth was made on the basis of a model of cultivation that takes account of the aspects that most affect this key process among all the ones that cooperate in the whole plant. The electricity and heat produced through a co-generator fueled by biogas produced from algal biomass, according to this study, are responsible for GHG emissions reduced by 52% compared to traditional technologies. The biogas produced during the 4 years of the project allows the substitution of 85 tonnes of oil equivalent (toe).

Bio-Oil Analysis Laboratory Procedures | Bioenergy | NREL

Science.gov (United States)

Bio-Oil Analysis Laboratory Procedures Bio-Oil Analysis Laboratory Procedures NREL develops laboratory analytical procedures (LAPs) for the analysis of raw and upgraded pyrolysis bio-oils. These standard procedures have been validated and allow for reliable bio-oil analysis. Procedures Determination

Micro-optics for microfluidic analytical applications.

Science.gov (United States)

Yang, Hui; Gijs, Martin A M

2018-02-19

This critical review summarizes the developments in the integration of micro-optical elements with microfluidic platforms for facilitating detection and automation of bio-analytical applications. Micro-optical elements, made by a variety of microfabrication techniques, advantageously contribute to the performance of an analytical system, especially when the latter has microfluidic features. Indeed the easy integration of optical control and detection modules with microfluidic technology helps to bridge the gap between the macroscopic world and chip-based analysis, paving the way for automated and high-throughput applications. In our review, we start the discussion with an introduction of microfluidic systems and micro-optical components, as well as aspects of their integration. We continue with a detailed description of different microfluidic and micro-optics technologies and their applications, with an emphasis on the realization of optical waveguides and microlenses. The review continues with specific sections highlighting the advantages of integrated micro-optical components in microfluidic systems for tackling a variety of analytical problems, like cytometry, nucleic acid and protein detection, cell biology, and chemical analysis applications.

The BioMart community portal: an innovative alternative to large, centralized data repositories

Science.gov (United States)

Smedley, Damian; Haider, Syed; Durinck, Steffen; Pandini, Luca; Provero, Paolo; Allen, James; Arnaiz, Olivier; Awedh, Mohammad Hamza; Baldock, Richard; Barbiera, Giulia; Bardou, Philippe; Beck, Tim; Blake, Andrew; Bonierbale, Merideth; Brookes, Anthony J.; Bucci, Gabriele; Buetti, Iwan; Burge, Sarah; Cabau, Cédric; Carlson, Joseph W.; Chelala, Claude; Chrysostomou, Charalambos; Cittaro, Davide; Collin, Olivier; Cordova, Raul; Cutts, Rosalind J.; Dassi, Erik; Genova, Alex Di; Djari, Anis; Esposito, Anthony; Estrella, Heather; Eyras, Eduardo; Fernandez-Banet, Julio; Forbes, Simon; Free, Robert C.; Fujisawa, Takatomo; Gadaleta, Emanuela; Garcia-Manteiga, Jose M.; Goodstein, David; Gray, Kristian; Guerra-Assunção, José Afonso; Haggarty, Bernard; Han, Dong-Jin; Han, Byung Woo; Harris, Todd; Harshbarger, Jayson; Hastings, Robert K.; Hayes, Richard D.; Hoede, Claire; Hu, Shen; Hu, Zhi-Liang; Hutchins, Lucie; Kan, Zhengyan; Kawaji, Hideya; Keliet, Aminah; Kerhornou, Arnaud; Kim, Sunghoon; Kinsella, Rhoda; Klopp, Christophe; Kong, Lei; Lawson, Daniel; Lazarevic, Dejan; Lee, Ji-Hyun; Letellier, Thomas; Li, Chuan-Yun; Lio, Pietro; Liu, Chu-Jun; Luo, Jie; Maass, Alejandro; Mariette, Jerome; Maurel, Thomas; Merella, Stefania; Mohamed, Azza Mostafa; Moreews, Francois; Nabihoudine, Ibounyamine; Ndegwa, Nelson; Noirot, Céline; Perez-Llamas, Cristian; Primig, Michael; Quattrone, Alessandro; Quesneville, Hadi; Rambaldi, Davide; Reecy, James; Riba, Michela; Rosanoff, Steven; Saddiq, Amna Ali; Salas, Elisa; Sallou, Olivier; Shepherd, Rebecca; Simon, Reinhard; Sperling, Linda; Spooner, William; Staines, Daniel M.; Steinbach, Delphine; Stone, Kevin; Stupka, Elia; Teague, Jon W.; Dayem Ullah, Abu Z.; Wang, Jun; Ware, Doreen; Wong-Erasmus, Marie; Youens-Clark, Ken; Zadissa, Amonida; Zhang, Shi-Jian; Kasprzyk, Arek

2015-01-01

The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. PMID:25897122

In vivo molecular photoacoustic tomography of melanomas targeted by bio-conjugated gold nanocages

Science.gov (United States)

Kim, Chulhong; Cho, Eun Chul; Chen, Jingyi; Song, Kwang Hyun; Au, Leslie; Favazza, Christopher; Zhang, Qiang; Cobley, Claire M.; Gao, Feng; Xia, Younan; Wang, Lihong V.

2010-01-01

Early diagnosis, accurate staging, and image-guided resection of melanomas remain crucial clinical objectives for improving patient survival and treatment outcomes. Conventional techniques cannot meet this demand because of the low sensitivity, low specificity, poor spatial resolution, shallow penetration, and/or ionizing radiation. Here we overcome such limitations by combining high-resolution photoacoustic tomography (PAT) with extraordinarily optical absorbing gold nanocages (AuNCs). When bio-conjugated with [Nle4,D-Phe7]-α-melanocyte-stimulating hormone, the AuNCs can serve as a novel contrast agent for in vivo molecular PAT of melanomas with both exquisite sensitivity and high specificity. The bio-conjugated AuNCs enhanced contrast ~300% more than the control, PEGylated AuNCs. The in vivo PAT quantification of the amount of AuNCs accumulated in melanomas was further validated with inductively coupled plasma mass spectrometry (ICP-MS). PMID:20731439

Bio-methane via fast pyrolysis of biomass

International Nuclear Information System (INIS)

Görling, Martin; Larsson, Mårten; Alvfors, Per

2013-01-01

Highlights: ► Pyrolysis gases can efficiently be upgraded to bio-methane. ► The integration can increase energy efficiency and provide a renewable vehicle fuel. ► The biomass to bio-methane conversion efficiency is 83% (HHV). ► The efficiency is higher compared to bio-methane produced via gasification. ► Competitive alternative to other alternatives of bio-oil upgrading. - Abstract: Bio-methane, a renewable vehicle fuel, is today produced by anaerobic digestion and a 2nd generation production route via gasification is under development. This paper proposes a poly-generation plant that produces bio-methane, bio-char and heat via fast pyrolysis of biomass. The energy and material flows for the fuel synthesis are calculated by process simulation in Aspen Plus®. The production of bio-methane and bio-char amounts to 15.5 MW and 3.7 MW, when the total inputs are 23 MW raw biomass and 1.39 MW electricity respectively (HHV basis). The results indicate an overall efficiency of 84% including high-temperature heat and the biomass to bio-methane yield amounts to 83% after allocation of the biomass input to the final products (HHV basis). The overall energy efficiency is higher for the suggested plant than for the gasification production route and is therefore a competitive route for bio-methane production

"Peak tracking chip" for label-free optical detection of bio-molecular interaction and bulk sensing.

Science.gov (United States)

Bougot-Robin, Kristelle; Li, Shunbo; Zhang, Yinghua; Hsing, I-Ming; Benisty, Henri; Wen, Weijia

2012-10-21

A novel imaging method for bulk refractive index sensing or label-free bio-molecular interaction sensing is presented. This method is based on specially designed "Peak tracking chip" (PTC) involving "tracks" of adjacent resonant waveguide gratings (RWG) "micropads" with slowly evolving resonance position. Using a simple camera the spatial information robustly retrieves the diffraction efficiency, which in turn transduces either the refractive index of the liquids on the tracks or the effective thickness of an immobilized biological layer. Our intrinsically multiplex chip combines tunability and versatility advantages of dielectric guided wave biochips without the need of costly hyperspectral instrumentation. The current success of surface plasmon imaging techniques suggests that our chip proposal could leverage an untapped potential to routinely extend such techniques in a convenient and sturdy optical configuration toward, for instance for large analytes detection. PTC design and fabrication are discussed with challenging process to control micropads properties by varying their period (step of 2 nm) or their duty cycle through the groove width (steps of 4 nm). Through monochromatic imaging of our PTC, we present experimental demonstration of bulk index sensing on the range [1.33-1.47] and of surface biomolecule detection of molecular weight 30 kDa in aqueous solution using different surface densities. A sensitivity of the order of 10(-5) RIU for bulk detection and a sensitivity of the order of ∼10 pg mm(-2) for label-free surface detection are expected, therefore opening a large range of application of our chip based imaging technique. Exploiting and chip design, we expect as well our chip to open new direction for multispectral studies through imaging.

Bio-threat microparticle simulants

Science.gov (United States)

Farquar, George Roy; Leif, Roald N

2012-10-23

A bio-threat simulant that includes a carrier and DNA encapsulated in the carrier. Also a method of making a simulant including the steps of providing a carrier and encapsulating DNA in the carrier to produce the bio-threat simulant.

Bio-threat microparticle simulants

Energy Technology Data Exchange (ETDEWEB)

Farquar, George Roy; Leif, Roald

2014-09-16

A bio-threat simulant that includes a carrier and DNA encapsulated in the carrier. Also a method of making a simulant including the steps of providing a carrier and encapsulating DNA in the carrier to produce the bio-threat simulant.

Bio-fuel production potential in Romania

International Nuclear Information System (INIS)

Laurentiu, F.; Silvian, F.; Dumitru, F.

2006-01-01

The paper is based on the ESTO Study: Techno- Economic Feasibility of Large-Scale Production of Bio-Fuels in EU-Candidate Countries. Bio-fuel production has not been taken into account significantly until now in Romania, being limited to small- scale productions of ethanol, used mostly for various industrial purposes. However the climatic conditions and the quality of the soil are very suitable in the country for development of the main crops (wheat, sugar-beet, sunflower and rape-seed) used in bio-ethanol and bio-diesel production. The paper intended to consider a pertinent discussion of the present situation in Romania's agriculture stressing on the following essential items in the estimation of bio-fuels production potential: availability of feed-stock for bio-fuel production; actual productions of bio-fuels; fuel consumption; cost assessment; SWOT approach; expected trends. Our analysis was based on specific agricultural data for the period 1996-2000. An important ethanol potential (due to wheat, sugar-beet and maize cultures), as well as bio-diesel one (due to sun-flower and rape-seed) were predicted for the period 2005-2010 which could be exploited with the support of an important financial and technological effort, mainly from EU countries

Round table on bio-fuels

International Nuclear Information System (INIS)

2005-11-01

The French ministers of agriculture and of industry have organized a meeting with the main French actors of agriculture, petroleum industry, car making and accessories industry and with professionals of agriculture machines to encourage the development of bio-fuels in France. This meeting took place in Paris in November 21, 2005. Its aim was to favor the partnerships between the different actors and the public authorities in order to reach the ambitious goals of the government of 5.75% of bio-fuels in fossil fuels by 2008, 7% by 2010 and 10% by 2015. The main points discussed by the participants were: the compatibility of automotive fuel standards with the objectives of bio-fuel incorporation, the development of direct incorporation of methanol in gasoline, the ethanol-ETBE partnership, the question of the lower calorific value of ETBE (ethyl tertio butyl ether), the development of new bio-fuels, the development of bio-diesel and the specific case of pure vegetal oils, and the fiscal framework of bio-fuels. This meeting has permitted to reach important improvements with 15 concrete agreements undertaken by the participants. (J.S.)

Chitosan: An undisputed bio-fabrication material for tissue engineering and bio-sensing applications.

Science.gov (United States)

Baranwal, Anupriya; Kumar, Ashutosh; Priyadharshini, A; Oggu, Gopi Suresh; Bhatnagar, Ira; Srivastava, Ananya; Chandra, Pranjal

2018-04-15

Biopolymers have been serving the mankind in various ways since long. Over the last few years, these polymers have found great demand in various domains which includes bio medicine, tissue engineering, bio sensor fabrications etc. because of their excellent bio compatibility. In this context, chitosan has found global attention due to its environmentally benign nature, biocompatibility, biodegradability, and ease of availability. In last one decade or so, extensive research in active biomaterials, like chitosan has led to the development of novel delivery systems for drugs, genes, and biomolecules; and regenerative medicine. Additionally, chitosan has also witnessed its usage in functionalization of biocompatible materials, nanoparticle (NP) synthesis, and immobilization of various bio-recognition elements (BREs) to form active bio-surfaces with great ease. Keeping these aspects in mind, we have written a comprehensive review which aims to acquaint its readers with the exceptional properties of chitosan and its usage in the domain of biomedicine, tissue engineering, and biosensor fabrication. Herein, we have briefly explained various aspects of direct utilization of chitosan and then presented vivid strategies towards formulation of chitosan based nanocomposites for biomedicine, tissue engineering, and biosensing applications. Copyright © 2018 Elsevier B.V. All rights reserved.

Water type and irrigation time effects on microbial metabolism of a soil cultivated with Bermuda-grass Tifton 85

Directory of Open Access Journals (Sweden)

Sandra Furlan Nogueira

2011-06-01

Full Text Available This study investigated the microbial metabolism in Bermuda-grass Tifton 85 areas after potable-water and effluent irrigation treatments. The experiment was carried out in Lins/SP with samples taken in the rainy and dry seasons (2006 after one year and three years of irrigation management, and set up on an entirely randomized block design with four treatments: C (control, without irrigation or fertilization, PW (potable water + 520 kg of N ha-1 year-1; TE3 and TE0 (treated effluent + 520 kg of N ha-1 year-1 for three years and one year, respectively. The parameters determined were: microbial biomass carbon, microbial activity, and metabolic quotient. Irrigation with wastewater after three years indicated no alteration in soil quality for C and ET3; for PW, a negative impact on soil quality (microbial biomass decrease suggested that water-potable irrigation in Lins is not an adequate option. Microbial activity alterations observed in TE0 characterize a priming effect.

Alkaline phosphatase immobilization onto Bio-Gide(R) and Bio-Oss(R) for periodontal and bone regeneration.

NARCIS (Netherlands)

Oortgiesen, D.A.W.; Plachokova, A.S.; Geenen, C.; Meijer, G.J.; Walboomers, X.F.; Beucken, J.J.J.P van den; Jansen, J.B.M.J.

2012-01-01

AIM: To evaluate the effect of alkaline phosphatase (ALP) immobilization onto Bio-Gide((R)) in vitro, and to study the in vivo performance of ALP-enriched Bio-Gide((R)) and/or Bio-Oss((R)) with the purpose to enhance periodontal regeneration. MATERIALS AND METHODS: Alkaline phosphatase ALP was

Toward Optic Flow Regulation for Wall-Following and Centring Behaviours

Directory of Open Access Journals (Sweden)

Julien Serres

2006-06-01

Full Text Available In our ongoing project on the autonomous guidance of Micro-Air Vehicles (MAVs in confined indoor and outdoor environments, we have developed a bio-inspired optic flow based autopilot enabling a hovercraft to travel safely, and avoid the walls of a corridor. The hovercraft is an air vehicle endowed with natural roll and pitch stabilization characteristics, in which planar flight control can be developed conveniently. It travels at a constant ground height (∼2mm and senses the environment by means of two lateral eyes that measure the right and left optic flows (OFs. The visuomotor feedback loop, which is called LORA(1 (Lateral Optic flow Regulation Autopilot, Mark 1, consists of a lateral OF regulator that adjusts the hovercraft's yaw velocity and keeps the lateral OF constant on one wall equal to an OF set-point. Simulations have shown that the hovercraft manages to navigate in a corridor at a “preset” groundspeed (1m/s without requiring a supervisor to make it switch abruptly between the control-laws corresponding to behaviours such as automatic wall-following, automatic centring, and automatically reacting to an opening encountered on a wall. The passive visual sensors and the simple control system used here are suitable for use on MAVs with an avionic payload of only a few grams.

Toward optic flow regulation for wall-following and centring behaviours

Directory of Open Access Journals (Sweden)

Franck Ruffier

2008-11-01

Full Text Available In our ongoing project on the autonomous guidance of Micro-Air Vehicles (MAVs in confined indoor and outdoor environments, we have developed a bio-inspired optic flow based autopilot enabling a hovercraft to travel safely, and avoid the walls of a corridor. The hovercraft is an air vehicle endowed with natural roll and pitch stabilization characteristics, in which planar flight control can be developed conveniently. It travels at a constant ground height (~2mm and senses the environment by means of two lateral eyes that measure the right and left optic flows (OFs. The visuomotor feedback loop, which is called LORA(1 (Lateral Optic flow Regulation Autopilot, Mark 1, consists of a lateral OF regulator that adjusts the hovercraft's yaw velocity and keeps the lateral OF constant on one wall equal to an OF set-point. Simulations have shown that the hovercraft manages to navigate in a corridor at a "pre-set" groundspeed (1m/s without requiring a supervisor to make it switch abruptly between the control-laws corresponding to behaviours such as automatic wall-following, automatic centring, and automatically reacting to an opening encountered on a wall. The passive visual sensors and the simple control system used here are suitable for use on MAVs with an avionic payload of only a few grams.