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Sample records for bengal gram cicer

  1. Bengal Gram Seed Husk as an adsorbent for the removal of dye from aqueous solutions – Batch studies

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    M.C. Somasekhara Reddy

    2017-05-01

    Full Text Available The feasibility of using Indian Seed Husk of Bengal Gram (Scientific Name: Cicer arietinum (SHBG, abundantly available in and around the Kurnool in Andhra Pradesh, for the anionic dye (Congo red, CR adsorption from aqueous solution, has been investigated as a low cost and an eco-friendly adsorbent. Adsorption studies were conducted on a batch process, to study the effects of contact time, initial concentration of CR, de-sorption and pH. Maximum colour removal was observed at lower pH. The dye attained equilibrium approximately at 1, 1.5, 2 and 2.5 h for dye concentrations 25, 50, 75 and 100 mg/l respectively. The present dye removal decreased from 89% to 74% as the dye concentration has been increased from 25 mg/l to 100 mg/l. A maximum removal of 92% is obtained at lower pH. Adsorption decreases with increase in pH. Maximum de-sorption of 26.4% is achieved in water medium at pH 11.95. The equilibrium data were analyzed by the Langmuir and Freundlich isotherms. The data fitted well with the Langmuir model, with a maximum adsorption capacity of 41.66 mg g−1. The pseudo-second-order kinetics was the best for the adsorption of CR, by SHBG with good correlation. The results suggest that SHBG is a potential low-cost adsorbent for the CR dye removal from synthetic dye wastewater.

  2. Bengal gram seed husk as an adsorbent for the removal of dyes from aqueous solutions – Equilibrium studies

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    M.C. Somasekhara Reddy

    2017-05-01

    Full Text Available Seed husk of Bengal gram (SHBG (Scientific Name: Cicer arietinum was used as an adsorbent for the removal of a direct dye namely Congo red (CR, two basic dyes namely methylene blue (MB & rhodamine-B (RB and an acidic dye namely acid blue 25 (AB from aqueous solutions with equilibrium isotherms. The effect of particle size, of mass of adsorbent, of agitation speed of shaker and of temperature of dye solutions was studied for understanding the interaction of dyes with adsorbent. The uptake of dyes by the adsorbent was increasing with increasing mass of the adsorbent, decreasing with increasing size of the adsorbent, and increasing with increasing agitation speed and temperature. The adsorption capacity for each dye-adsorbent system was determined by using the Langmuir isotherm. The adsorption capacity of adsorbent for MB, RB, CR and AB was 333.33, 133.34, 78.12 and 5.56 mg g−1, respectively. The experimental data fit well with the Langmuir and Freundlich models. The standard enthalpy change of adsorption for MB, RB, CR and AB was 13.5, 10.97, 4.01 and 6.72 kJ mol−1, respectively. The average standard entropy change of adsorption for MB, RB, CR and AB is 58.2957, 36.869, 13.2138 and −3.4179 kJ mol−1, respectively. The adsorption of two basic dyes is much higher than that of the direct and acid dyes.

  3. Rose Bengal-decorated silica nanoparticles as photosensitizers for inactivation of gram-positive bacteria

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    Guo Yanyan; Zhang Peng [Department of Chemistry, New Mexico Tech, Socorro, NM 87801 (United States); Rogelj, Snezna, E-mail: pzhang@nmt.edu [Department of Biology, New Mexico Tech, Socorro, NM 87801 (United States)

    2010-02-10

    A new type of photosensitizer, made from Rose Bengal (RB)-decorated silica (SiO{sub 2}-NH{sub 2}-RB) nanoparticles, was developed to inactivate gram-positive bacteria, including Methicillin-resistant Staphylococcus aureus (MRSA), with high efficiency through photodynamic action. The nanoparticles were characterized microscopically and spectroscopically to confirm their structures. The characterization of singlet oxygen generated by RB, both free and immobilized on a nanoparticle surface, was performed in the presence of anthracene-9,10-dipropionic acid. The capability of SiO{sub 2}-NH{sub 2}-RB nanoparticles to inactivate bacteria was tested in vitro on both gram-positive and gram-negative bacteria. The results showed that RB-decorated silica nanoparticles can inactivate MRSA and Staphylococcus epidermidis (both gram-positive) very effectively (up to eight-orders-of-magnitude reduction). Photosensitizers of such design should have good potential as antibacterial agents through a photodynamic mechanism.

  4. Effect of iron dusts on physiological responses of gram seedlings (Cicer arietinum L. under laboratory conditions

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    Das C.R.

    2012-08-01

    Full Text Available A laboratory experiments was conducted for the assessment of physiological and biochemical responses of iron dust under the influence of different pH levels (6.5, 5.0, 3.0 and two concentration of iron dust (0.1 mg and 0.6 mg with two particle size (100 μm and 300 μm sprayed on the Cicer arietinum L. seed surface for fifteen day exposure. Observation was made on germination percentage and germination rate, vigour index, % phytotoxicity of root and shoot, chlorophyll, sugar, protein and proline content in both treated and control plant. The present results revealed that the seed color changes to brown under iron stress. The lower germination percentage and germination rate gradually decrease with pH of the medium but both the parameters were not significantly affected by the iron dust. Moreover higher % phytotoxicity was observed under all treatments compared to control and also lower values of this parameter were recorded in shoot than root. The reduction trend in chlorophyll and protein content was recorded at low pH but reverse result was recorded for sugar. Moreover highest proline was recorded under highly acidic condition.

  5. Impacts of vehicle exhaust black soot on germination of gram seed (Cicer arietinum L.

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    Naba Kumar Mondal

    2014-02-01

    Full Text Available An investigation was initiated to examine the effects of carbon soot collected from exhaust tube of 15 years old petrol and diesel operated vehicles on gram seed germination and biochemical changes of seedling. In view of the widespread cultivation of gram seed in India and long-term impact of black carbon is the warming of the atmosphere as per the recommendation of IPCC (2007. Black soot were separately treated with different doses and the effects of these treatment had on seed germination, seedling vigor, chlorophyll and carotenoid content, root and shoot growth, protein, sugar, phenol and proline estimation were studied. The treatment T6 significantly affected on seed germination (84% as well as seedling vigor and chlorophyll content. But other treatment promoted both seed germination and seedling vigor along with enhancement of other biochemical constituents. On the other hand micrograph study revealed that treatments T1 and T4 both showed negative effects on stomata rather than the ultra-structure of xylem and phloem.

  6. Effect of Nano-ZnO Particle Suspension on Growth of Mung (Vigna radiata and Gram (Cicer arietinum Seedlings Using Plant Agar Method

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    Pramod Mahajan

    2011-01-01

    Full Text Available The present study demonstrates an effect of nano-ZnO particles on the growth of plant seedlings of mung (Vigna radiate and gram (Cicer arietinum. The study was carried out in plant agar media to prevent precipitation of water-insoluble nanoparticles in the test units. Various concentrations of nano-ZnO particles in suspension form were introduced to the agar media, and their effect on the root and shoot growth of the seedlings was examined. The main experimental approach, using correlative light and scanning electron microscopy provided evidence of adsorption of nanoparticles on the root surface. Absorption of nanoparticles by seedlings root was also detected by inductive coupled plasma/atomic emission spectroscopy (ICP-AES. It was found that at certain optimum concentration, the seedlings displayed good growth over control, and beyond that, retardation in growth was observed.

  7. Toxicity of As(III and As(V on morphological traits and pigments of Gram Seed (Cicer arietinum during germination and early seedling growth

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    Naba Kumar Mondal

    2016-03-01

    Full Text Available Arsenic (As contamination is an important environmental consequence in some part of India and other countries. In this study, we investigated that individual phytotoxicity of both As(III and As(V on Cicer arietinum. Total five different concentrations (0, 2, 4, 6, 8, and 10 mg/L of both As(III and As(V have been considered for this study. Results indicate that percent germination significantly (p < 0.05 reduced with increasing concentration of both As(III and As(V. However, As(III showed pronounced effects than As(V. The variation of root and shoot length was equally affected by arsenite, where as arsenate showed higher negative impact on shoot length than root length up to the concentration 6 mg/L. However, arsenate concentration greater than 6 mg/L showed opposite trend of variation in root and shoot length. The pigment (Chlorophyll ‘a’, ‘b’ and total chlorophylls and carotenoids level also gradually decrease with increasing concentration of both forms of arsenic.

  8. Bioaccessibility of polyphenols from wheat (Triticum aestivum), sorghum (Sorghum bicolor), green gram (Vigna radiata), and chickpea (Cicer arietinum) as influenced by domestic food processing.

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    Hithamani, Gavirangappa; Srinivasan, Krishnapura

    2014-11-19

    Cereals (wheat and sorghum) and legumes (green gram and chickpea) commonly consumed in Asia and Africa were evaluated for polyphenolic content. Bioaccessibility of polyphenols from these grains as influenced by domestic processing was also estimated. Total polyphenol content of wheat and sorghum was 1.20 and 1.12 mg/g respectively, which was increased by 49% and 20% respectively, on roasting. In contrast, a significant reduction of the same was observed in both the cereals after pressure-cooking, open-pan boiling, and microwave heating. Total flavonoids, which was 0.89 mg/g in native sorghum, reduced drastically after processing. Tannin content of both the cereals significantly increased on sprouting as well as roasting. Total polyphenol content reduced by 31% on sprouting but increased to 24% on roasting in green gram. Pressure-cooking (53%), open-pan boiling (64%), and microwave heating (>2-fold increase) significantly increased total polyphenol content in chickpea, while drastic reduction was observed in the total flavonoid content. Bioaccessible total polyphenols from these grains were in the following order: green gram > chickpea > wheat > sorghum. Domestic processing of these grains had minimal/no effect on the bioaccessible total flavonoid content. Not all the phenolic compounds present in them were bioaccessible. Concentration of bioaccessible phenolic compounds increased especially on sprouting and roasting of these grains, except chickpea, where sprouting significantly reduced the same (476 to 264 μg/g). Microwave heating significantly enhanced the concentration of bioaccessible polyphenols especially from chickpea. Thus, sprouting and roasting provided more bioaccessible polyphenols from the cereals and legumes studied.

  9. Cicer L., a monograph of the genus, with special reference to the chickpea (Cicer arietinum L.), its ecology and cultivation

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    Maesen, van der L.J.G.

    1972-01-01

    1. The history of the chickpea or gram, Cicer arietinum L., has been described from Homer's time and the earliest finds, 5450 B.C. in Hacilar, Turkey, up to the present day. The crop was first domesticated in Asia Minor and was introduced in India either from Central Asia or Asia Minor, the two mai

  10. Cicer L., a monograph of the genus, with special reference to the chickpea (Cicer arietinum L.), its ecology and cultivation

    NARCIS (Netherlands)

    Maesen, van der L.J.G.

    1972-01-01

    1. The history of the chickpea or gram, Cicer arietinum L., has been described from Homer's time and the earliest finds, 5450 B.C. in Hacilar, Turkey, up to the present day. The crop was first domesticated in Asia Minor and was introduced in India

  11. Effect of sodium fluoride and sodium nitroprouside on Cicer arietinum and Pisum sativum

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    Naba Kumar Mondal

    2016-07-01

    Full Text Available In present study, the individual and combine effect of sodium fluoride (NaF and sodium nitroprouside (SNP on germination and biochemical parameters (pigments, sugar, protein, amino acid, and phenol of Bengal gram (Cicer arietinum and peas (Pisum sativum has been studied. After three days of NaF treatment, reductions were observed in percentage of seed germination, root and shoot length, and pigment content with increasing concentration of NaF (1 to 4 mg L-1. Seedlings treated with SNP, both alone and in combination of NaF, showed enhancement in seed germination as well as other growth parameters. NaF-treated seedlings were found to accumulate more soluble sugars and phenols, which were further increased by SNP treatment thereby indicating a synergistic effect of the possible reasons for the ameliorative effects of SNP in seedlings of Pisum sativum growing under NaF stress. Results also demonstrated that SNP application did not show any improvement in both morpho-physiologically and biochemically under sodium fluoride stress condition.

  12. Expression of a Chimeric Gene Encoding Insecticidal Crystal Protein Cry1Aabc of Bacillus thuringiensis in Chickpea (Cicer arietinum L. Confers Resistance to Gram Pod Borer (Helicoverpa armigera Hubner.

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    Alok Das

    2017-08-01

    Full Text Available Domain swapping and generation of chimeric insecticidal crystal protein is an emerging area of insect pest management. The lepidopteran insect pest, gram pod borer (Helicoverpa armigera H. wreaks havoc to chickpea crop affecting production. Lepidopteran insects were reported to be controlled by Bt (cryI genes. We designed a plant codon optimized chimeric Bt gene (cry1Aabc using three domains from three different cry1A genes (domains I, II, and III from cry1Aa, cry1Ab, and cry1Ac, respectively and expressed it under the control of a constitutive promoter in chickpea (cv. DCP92-3 to assess its effect on gram pod borer. A total of six transgenic chickpea shoots were established by grafting into mature fertile plants. The in vitro regenerated (organogenetic shoots were selected based on antibiotic kanamycin monosulfate (100 mg/L with transformation efficiency of 0.076%. Three transgenic events were extensively studied based on gene expression pattern and insect mortality across generations. Protein expression in pod walls, immature seeds and leaves (pre- and post-flowering were estimated and expression in pre-flowering stage was found higher than that of post-flowering. Analysis for the stable integration, expression and insect mortality (detached leaf and whole plant bioassay led to identification of efficacious transgenic chickpea lines. The chimeric cry1Aabc expressed in chickpea is effective against gram pod borer and generated events can be utilized in transgenic breeding program.

  13. Expression of a Chimeric Gene Encoding Insecticidal Crystal Protein Cry1Aabc of Bacillus thuringiensis in Chickpea (Cicer arietinum L.) Confers Resistance to Gram Pod Borer (Helicoverpa armigera Hubner.).

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    Das, Alok; Datta, Subhojit; Thakur, Shallu; Shukla, Alok; Ansari, Jamal; Sujayanand, G K; Chaturvedi, Sushil K; Kumar, P A; Singh, N P

    2017-01-01

    Domain swapping and generation of chimeric insecticidal crystal protein is an emerging area of insect pest management. The lepidopteran insect pest, gram pod borer (Helicoverpa armigera H.) wreaks havoc to chickpea crop affecting production. Lepidopteran insects were reported to be controlled by Bt (cryI) genes. We designed a plant codon optimized chimeric Bt gene (cry1Aabc) using three domains from three different cry1A genes (domains I, II, and III from cry1Aa, cry1Ab, and cry1Ac, respectively) and expressed it under the control of a constitutive promoter in chickpea (cv. DCP92-3) to assess its effect on gram pod borer. A total of six transgenic chickpea shoots were established by grafting into mature fertile plants. The in vitro regenerated (organogenetic) shoots were selected based on antibiotic kanamycin monosulfate (100 mg/L) with transformation efficiency of 0.076%. Three transgenic events were extensively studied based on gene expression pattern and insect mortality across generations. Protein expression in pod walls, immature seeds and leaves (pre- and post-flowering) were estimated and expression in pre-flowering stage was found higher than that of post-flowering. Analysis for the stable integration, expression and insect mortality (detached leaf and whole plant bioassay) led to identification of efficacious transgenic chickpea lines. The chimeric cry1Aabc expressed in chickpea is effective against gram pod borer and generated events can be utilized in transgenic breeding program.

  14. Mitigation of starch-induced postprandial glycemic spikes in rats by antioxidants-rich extract of Cicer arietinum Linn. seeds and sprouts.

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    Tiwari, Ashok Kumar; Sahana, Chinthapatla; Zehra, Amtul; Madhusudana, Kuncha; Kumar, Domati Anand; Agawane, Sachin Bharat

    2013-10-01

    Consumption of highly processed calories dense diet leads abrupt increase in postprandial blood glucose level, which in turn induces immediate oxidative stress. Postprandial hyperglycemia (PPHG) and resultant oxidative stress is one of the earliest detectable abnormalities in diabetes prone individuals, independent risk factor for development of cardiovascular disorders (CVD), a major pathophysiological link between diabetes and CVD and an important contributing factor in atherogenesis even in non-diabetic individuals. Therefore, dietary supplements mitigating PPHG spikes along with potent antioxidant activities may help decrease development of PPHG and oxidative stress induced pathogenesis. The study evaluated free radicals scavenging, antioxidant properties and intestinal α-glucosidase inhibitory activity in methanol extract of two varieties of Cicer arietinum Linn viz. Bengal gram and Kabuli chana and green gram (Vigna radiata Linn. Wilczek) raw grains and their sprouts and studied their influence on starch-induced postprandial glycemic excursion in rats. Healthy grains were procured from local markets. Free radicals scavenging antioxidant and glucose-induced hemoglobin (Hb)-glycation inhibition activities were analyzed using standard in vitro procedures. In vitro antihyperglycemic activity was evaluated by assessing rat intestinal α-glucosidase inhibitory activity. Influence on starch-induced postprandial glycemic excursion in rats was studied by pre-treatment of rats with extracts. Compared with raw seeds increase in total polyphenol and flavonoids concentration in green gram sprouts and Kabuli chana sprouts (KCs) were observed. Total protein concentrations in sprouts did not differ from non-sprouted grains. 2,2'- Azinobis (3-ethyl benzthiazoline-6-sulphonic acid) cation scavenging activity was more than twice in Bengal gram sprouts of (BGs) and KCs than their raw seeds. 2,2-diphenyl-1-picrylhydrazyl, hydrogen peroxide scavenging, nitro blue tetrazolium

  15. Mitigation of starch-induced postprandial glycemic spikes in rats by antioxidants-rich extract of Cicer arietinum Linn. seeds and sprouts

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    Ashok Kumar Tiwari

    2013-01-01

    Full Text Available Introduction: Consumption of highly processed calories dense diet leads abrupt increase in postprandial blood glucose level, which in turn induces immediate oxidative stress. Postprandial hyperglycemia (PPHG and resultant oxidative stress is one of the earliest detectable abnormalities in diabetes prone individuals, independent risk factor for development of cardiovascular disorders (CVD, a major pathophysiological link between diabetes and CVD and an important contributing factor in atherogenesis even in non-diabetic individuals. Therefore, dietary supplements mitigating PPHG spikes along with potent antioxidant activities may help decrease development of PPHG and oxidative stress induced pathogenesis. Objectives: The study evaluated free radicals scavenging, antioxidant properties and intestinal α-glucosidase inhibitory activity in methanol extract of two varieties of Cicer arietinum Linn viz. Bengal gram and Kabuli chana and green gram (Vigna radiata Linn. Wilczek raw grains and their sprouts and studied their influence on starch-induced postprandial glycemic excursion in rats. Materials and Methods: Healthy grains were procured from local markets. Free radicals scavenging antioxidant and glucose-induced hemoglobin (Hb-glycation inhibition activities were analyzed using standard in vitro procedures. In vitro antihyperglycemic activity was evaluated by assessing rat intestinal α-glucosidase inhibitory activity. Influence on starch-induced postprandial glycemic excursion in rats was studied by pre-treatment of rats with extracts. Results: Compared with raw seeds increase in total polyphenol and flavonoids concentration in green gram sprouts and Kabuli chana sprouts (KCs were observed. Total protein concentrations in sprouts did not differ from non-sprouted grains. 2,2′- Azinobis (3-ethyl benzthiazoline-6-sulphonic acid cation scavenging activity was more than twice in Bengal gram sprouts of (BGs and KCs than their raw seeds. 2,2-diphenyl-1

  16. Economy of Fertilizer Nitrogen through Organic Sources in Rain-Fed Rice-Legume Cropping Systems in West Bengal, India

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    A.M. Puste

    2001-01-01

    Full Text Available Field experiments were conducted at a farmers’ plot adjacent to the Regional Research Station, red and laterite zone, Sub-center Sekhampur (Birbhum district of West Bengal, India, situated 23° 24' N latitude, 87° 24' E longitude, to study the effect of different bio- and organic sources of nutrients instead of total fertilizer N in terms of crop productivity in the sequence and building up of soil fertility. During the wet seasons of 1997 and 1998, 12 combinations of bio- and organic sources (crop residues, well decomposed cow dung, dhanicha as green manure were substituted for 25–50% of N fertilizer applied on transplanted rice (Cv. IR 36. Subsequently, during the winters of 1997–1998 and 1998–1999, leguminous pulse crops like lentil (Lens culinaris [L.] Medic., gram (Cicer arietinum L. and lathyrus (Lathyrus sativus L. were grown with and without inoculation of Rhizobium. Results revealed that the application of inorganic N in combination with organic sources exhibited a significant increase in rice yield (3.60–3.84 t ha-1 compared to the yield from sole application of N (3.19–3.26 t ha-1. The study showed that about 25% of total applied N was saved without significant yield reduction with simultaneous improvement of soil physical properties (pH, organic matter, available N, P, K, and CEC. Seed yield of pulses (lentil, gram, and lathyrus were more pronounced in the treatment inoculated with Rhizobium, with a saving of 42.6–48.4 kg N ha-1. Therefore, the results suggest that the combined application of inorganic and organic N sources in a 75:25 ratio is a superior N-management practice with regards to crop yields as well as improvement of soil fertility.

  17. A natural infrageneric classification for Cicer (Leguminosae, Cicereae)

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    Davies, A.M.R.; Maxted, N.; Maesen, van der L.J.G.

    2007-01-01

    A comprehensive morphological survey and analysis of all taxonomically recognised wild species of Cicer L. (Leguminosae, Cicereae) is presented. The data (104 characters from 152 herbarium specimens representing 34 of the 44 recognised taxa in the genus Cicer with supplementary data for the remainin

  18. Garbanzo diet lowers cholesterol in hamsters

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    Cholesterol-lowering potential of diets with 22% protein from Chickpea (Cicer arietinum, European variety of Garbanzo, Kabuli Chana), Bengal gram (Cicer arietinum, Asian variety of Garbanzo, Desi Chana, smaller in size, yellow to black color), lentils, soy protein isolate, hydrolyzed salmon protein...

  19. 厨房废水对绿豆、乌头叶菜豆和鹰嘴豆种子萌发及其生物量的影响%Impacts of kitchen waste water on seed germination and biomass in mung bean [Vigna radiata (L.) R.Wilczek], moth bean(Vigna aconitifolia Jacq.) and gram (Cicer arietinum L.)

    Institute of Scientific and Technical Information of China (English)

    Goel Arti; Porwal Shalini

    2013-01-01

    [目的]探讨厨房废水对不同作物种子萌发和生物量的影响,为厨房废水利用途径的改进提供参考.[方法]分析厨房废水的生理生化特性,采用不同浓度废水(0,10%,25%,50% and 100%)处理绿豆、乌头叶菜豆和鹰嘴豆种子,探讨其对种子萌发和幼苗茎、根的长度、鲜干重的影响.[结果]厨房废水具有较高的总溶解浓度、化学需氧量和生物需氧量及较低的溶解氧量.经50%厨房废水处理24h后,不同作物种子发芽率均为100%,不同作物的茎、根长度和干、鲜重均达到最高.说明50%厨房废水处理可使不同作物获得最大的生物量.[结论]从餐馆里收集的厨房废水可作为较好的营养基质,用于大规模栽培绿豆、乌头叶菜豆和鹰嘴豆,成本低廉.%[Objective]The present study was done with an aim to investigate the impacts of kitchen waste water on seed germination and biomass of some crop plants.This study will provide the way of utilization of waste water in crop improvement purposes.[Method] In this study,the physico-chemical characteristics of the kitchen waste water were analyzed.Seeds of gram,mung bean and moth bean were treated with different concentrations i.e.0,10%,25%,50% and 100% of kitchen waste water.The effects of different concentrations of kitchen waste on seed germination,length as well as fresh and dry weight of both root and shoot of gram,mung bean and moth bean seedlins after treatment were recorded.[Result]The kitchen waste water had a high value of TDS,COD and BOD,and very low value of DO.50% concentration of kitchen waste water was responsible for 100% germination of seeds of all the crop plants after 24 hours of treatment.All crops showed the highest value of length,fresh and dry weight of shoot and root under treatment of 50% concentration of kitchen waste water.It suggested that maximum biomass of all the three crop plants could be found at 50% concentration of the

  20. Primary Schooling in West Bengal

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    Sen, Amartya

    2010-01-01

    With his Nobel Prize award money, Amartya Sen set up the Pratichi Trust which carries out research, advocacy and experimental projects in basic education, primary health care, and women's development in West Bengal and Bangladesh. Professor Sen himself took active interest in this work--helping set the agenda, looking at the evidence from…

  1. [Studies on chemical constituents in seeds of Cicer arietinum].

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    Tan, Yong-xia; Sun, Yu-hua; Chen, Ruo-yun

    2007-08-01

    To study the chemical constituents in seeds of Cicer arietinum, so that to find bioactive natural products. Dried and sprouted seeds of C. arietinum were extracted with ethanol of various concentrations respectively, then isolated and purified by silica gel, macroreticular resin D 101, Sephadex LH -20 gel column chromatography, and structures of compounds were identified by spectral analysis. Nine compounds have been isolated and identified: 3-hydroxy-olean-12-ene (1), biochanin A-7-O-beta-D-glucoside (2), cerebroside (3), 1-ethyl-alpha-L-galactoside (4), uridine (5), adenosine (6), trytophan (7), biochanin A (8), fomononetin (9). Compounds 1, 3, 4, 6, 7 were isolated from genus Cicer for the first time.

  2. Seroepidemiology of bluetongue in South Bengal

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    Arkendu Halder

    2016-01-01

    Full Text Available Aim: With the aim of revealing the epidemiological intricacies of bluetongue (BT in the southern part of West Bengal state, the present study was undertaken to assess seroprevalence of BT along with identification of the vector of the disease, i.e., Culicoides midges available in the region in their breeding season with conducive environmental factors, if any. Materials and Methods: A total of 1509 (sheep-504, goat-1005 samples were collected from three different agroclimatic zones of South Bengal viz. new alluvial, red laterite and coastal saline. To detect anti-BT antibodies in the collected serum samples, indirect-enzyme-linked immunosorbent assay (i-ELISA was performed. Culicoides midges were collected from those agro-climatic zones of South Bengal for species identification. The meteorological parameters, viz. temperature (maximum and minimum, rainfall and relative humidity of three agro-climatic zones of South Bengal were analyzed for the months of July to December during 2010-2013. Results: The overall seropositivity was 33.13% and 30.24% in sheep and goat, respectively as assessed by i-ELISA. In South Bengal, the predominant species of Culicoides found were Culicoides schultzei, Culicoides palpifer and Culicoides definitus. Conclusion: Since virus transmitting species of Culicoides midges could be detected in South Bengal, besides high seropositivity in ruminants, the possibility of circulating BT virus in South Bengal is quite imminent.

  3. Morphological features in the Bay of Bengal

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    Sarma, K.V.L; Ramana, M.V; Subrahmanyam, V; Krishna, K.S.; Ramprasad, T.; Desa, M.

    -1 J. Ind. Geophys. Union (2000) Vol. 4, No.2, pp. 185-190 Morphological features in the Bay of Bengal K.V.L.N.S.Sarma, M.V.Ramana1 , V.Subrahmanyam1 K.S.Krishna1, T.Ramprasad1 and Maria Desa1 National Institute of Oceanography, Regional Centre 176... of magnetic anomalies, Ramana et al. (1994) inferred some fracture zones. Due to huge sediment overburden in the Bay of Bengal surface expression of these 185 K.V.L.N.S.Sarma et al. Figure la. Bathymetry map of the Bay of Bengal. Contour interval 500 m...

  4. Magnetic anomalies in Central Bengal fan

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    Rao, T.C.S.; Lakshminarayana, S.; Sarma, K.V.L.N.S.

    Total magnetic field anomalies recorded over the Central Bengal Fan are analysed and the depths to the magnetic basement are computed using the analytical signal and the Werner deconvolution methods. To the west and east of 85 degrees E...

  5. Watermass structure in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sastry, J.S.; Rao, D.P.; Murty, V.S.N.; Sarma, Y.V.B.; Suryanarayana, A.; Babu, M.T.

    The distributions of temperature, salinity thermosteric anomaly, density flux function and stability along 88 degrees E in the Bay of Bengal are presented. The surface salinities showed strong gradients both horizontally and vertically in northern...

  6. Two novel mastreviruses from chickpea (Cicer arietinum) in Australia.

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    Thomas, J E; Parry, J N; Schwinghamer, M W; Dann, E K

    2010-11-01

    Two novel mastreviruses (genus Mastrevirus; family Geminiviridae), with proposed names chickpea chlorosis virus (CpCV) and chickpea redleaf virus, are described from chickpea (Cicer arietinum) from eastern Australia. The viruses have genomes of 2,582 and 2,605 nucleotides, respectively, and share similar features and organisation with typical dicot-infecting mastreviruses. Two distinct strains of CpCV were suggested by phylogenetic analysis. Additionally, a partial mastrevirus Rep sequence from turnip weed (Rapistrum rugosum) indicated the presence of a distinct strain of Tobacco yellow dwarf virus (TYDV). In phylogenetic analyses, isolates of Bean yellow dwarf virus, Chickpea chlorotic dwarf Pakistan virus and Chickpea chlorotic dwarf Sudan virus from southern and northern Africa and south-central and western Asia clustered separately from these three viruses from Australia. An Australian, eastern Asian, or south-eastern Asian origin for the novel mastreviruses and TYDV is discussed.

  7. Effectiveness of Cicer arietinum in cutaneous problems: viewpoint of Avicenna and Razi.

    Science.gov (United States)

    Mahjour, Marjan; Khoushabi, Arash; Noras, MohammadReza; Hamedi, Shokouhsadat

    2017-08-29

    Cicer arietinum is one of the popular legumes in the most parts of the world. It's known for a long time in Asia because of the many possibilities of its application. Cicer arietinum has benefits for the skin regarding safe ingredients. Some of these ingredients are recommended in skin care. This study aimed to introduce the benefits of Cicer arietinum by reviewing of traditional literature from 10th to 21th century and also conventional medicine for its safe ingredients by searching the electronic data banks such as ISI, Pub Med and Scopus. The results showed Cicer arietinum has many ingredients such as Phenolic compounds, allantoin and amino acids that effect on the skin problems. Also, great traditional Persian scientists such as Avicenna and Razi suggested about the cutaneous benefits of Cicer arietinum. The findings of this study can help the researchers in producing better cosmetic and therapeutic products. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

  8. Purification and characterization of α-galactosidase from white chickpea (Cicer arietinum).

    Science.gov (United States)

    Singh, Neelesh; Kayastha, Arvind M

    2012-03-28

    Glycosylated α-galactosidase (melibiase) has been purified from white chickpea ( Cicer arietinum ) to 340-fold with a specific activity of 61 units/mg. Cicer α-galactosidase showed a M(r) of 45 kDa on SDS-PAGE and by MALDI-TOF. The optimum pH and temperature with pNPGal were 4.5 and 50 °C, respectively. The K(m) for hydrolysis of pNPGal was 0.70 mM. Besides hydrolyzing the pNPGal, Cicer α-galactosidase also hydrolyzed natural substrates such as melibiose, raffinose, and stachyose very effectively; hence, it can be exploited commercially for improving the nutritional value of soy milk. Galactose was found to be a competitive inhibitor. The property of this enzyme to cleave the terminal galactose residues can be utilized for converting the group B erythrocytes to group O erythrocytes.

  9. Photoelectrocatalytic degradation of Rose Bengal

    Institute of Scientific and Technical Information of China (English)

    LIU Hui-ling; ZHOU Ding; LI Xiang-zhong; YUE Ping-tao

    2003-01-01

    An innovative photoelectrode, TiO2/Ti mesh electrode, was prepared by galvanostaticanodisation. The morphology and the crystalline texture of the TiO2 film on mesh electrode were examined by scanning electronic microscopy and Raman spectroscopy respectively. The examination results indicated that the structure and properties of the film depended on anodisation rate, and the anatase was the dominant component under the controlled experimental conditions. Degradation of Rose Bengal(RB) in photocatalytic(PC) and photoelectrocatalytic(PEC) reaction was investigated, the results demonstrated that electric biasing could improve the efficiency of photocatalytic reaction. The measurement results of TOC in photoelectrocatalytic degradation showed that the mineralisation of RB was complete relatively. The comparison between the degradation efficiency of RB in PEC process and that in aqueous TiO2 dispersion was conducted. The results showed that the apparent first-order rate constant of RB degradation in PEC process was larger than that in aqueous dispersion with 0.1%-0.3% TiO2 powder, but was smaller than that in aqueous dispersion with 1.0% TiO2.

  10. Proline improves copper tolerance in chickpea (Cicer arietinum).

    Science.gov (United States)

    Singh, Vijeta; Bhatt, Indu; Aggarwal, Anjali; Tripathi, Bhumi Nath; Munjal, Ashok Kumar; Sharma, Vinay

    2010-09-01

    The present study suggests the involvement of proline in copper tolerance of four genotypes of Cicer arietinum (chickpea). Based on the data of tolerance index and lipid peroxidation, the order for copper tolerance was as follows: RSG 888 > CSG 144 > CSG 104 > RSG 44 in the selected genotypes. The basis of differential copper tolerance in chickpea genotypes was characterized by analyzing, antioxidant enzymes (superoxide dismutase, ascorbated peroxidase and catalase), phytochelatins, copper uptake, and proline accumulation. Chickpea genotypes showed stimulated superoxide dismutase activity at all tested concentrations of copper, but H(2)O(2) decomposing enzymes especially; ascorbate peroxidase did not increase with 25 and 50 microM copper treatments. Catalase activity, however, increased at lower copper concentrations but failed to stimulate at 50 microM copper. Such divergence in responses of these enzymes minimizes their importance in protecting chickpea against copper stress. The sensitive genotypes showed greater enhancement of phytochelatins than that of tolerant genotypes. Hence, the possibility of phytochelatins in improving copper tolerance in the test plant is also excluded. Interestingly, the order of proline accumulation in the chickpea genotypes (RSG 888 > CSG 144 > CSG 104 > RSG 44) was exactly similar to the order of copper tolerance. Based on hyperaccumulation of proline in tolerant genotype (RSG 44) and the reduction and improvement of lipid peroxidation and tolerance index, respectively, by proline pretreatment, we conclude that hyperaccumulation of proline improves the copper tolerance in chickpea.

  11. First report of dodder (Cuscuta pentagona) on chickpea (Cicer arietinum) in the United States

    Science.gov (United States)

    Chickpea (Cicer arietinum L.) is an important rotational and an emerging specialty crop in the Pacific Northwest of the United States, in California, and in the Northern Great Plains of the USA and Canada. Dodders (Cuscuta spp.) are widespread parasitic weeds on many crops worldwide. Several Cusc...

  12. Dissecting the Root Nodule Transcriptome of Chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Kant, Chandra; Pradhan, Seema; Bhatia, Sabhyata

    2016-01-01

    A hallmark trait of chickpea (Cicer arietinum L.), like other legumes, is the capability to convert atmospheric nitrogen (N2) into ammonia (NH3) in symbiotic association with Mesorhizobium ciceri. However, the complexity of molecular networks associated with the dynamics of nodule development in chickpea need to be analyzed in depth. Hence, in order to gain insights into the chickpea nodule development, the transcriptomes of nodules at early, middle and late stages of development were sequenced using the Roche 454 platform. This generated 490.84 Mb sequence data comprising 1,360,251 reads which were assembled into 83,405 unigenes. Transcripts were annotated using Gene Ontology (GO), Cluster of Orthologous Groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways analysis. Differential expression analysis revealed that a total of 3760 transcripts were differentially expressed in at least one of three stages, whereas 935, 117 and 2707 transcripts were found to be differentially expressed in the early, middle and late stages of nodule development respectively. MapMan analysis revealed enrichment of metabolic pathways such as transport, protein synthesis, signaling and carbohydrate metabolism during root nodulation. Transcription factors were predicted and analyzed for their differential expression during nodule development. Putative nodule specific transcripts were identified and enriched for GO categories using BiNGO which revealed many categories to be enriched during nodule development, including transcription regulators and transporters. Further, the assembled transcriptome was also used to mine for genic SSR markers. In conclusion, this study will help in enriching the transcriptomic resources implicated in understanding of root nodulation events in chickpea.

  13. Characterising root trait variability in chickpea (Cicer arietinum L.) germplasm.

    Science.gov (United States)

    Chen, Yinglong; Ghanem, Michel Edmond; Siddique, Kadambot Hm

    2017-04-01

    Chickpea (Cicer arietinum L.) is an important grain legume crop but its sustainable production is challenged by predicted climate changes, which are likely to increase production limitations and uncertainty in yields. Characterising the variability in root architectural traits in a core collection of chickpea germplasm will provide the basis for breeding new germplasm with suitable root traits for the efficient acquisition of soil resources and adaptation to drought and other abiotic stresses. This study used a semi-hydroponic phenotyping system for assessing root trait variability across 270 chickpea genotypes. The genotypes exhibited large variation in rooting patterns and branching manner. Thirty root-related traits were characterised, 17 of which had coefficients of variation ≥0.3 among genotypes and were selected for further examination. The Pearson correlation matrix showed a strong correlation among most of the selected traits (P≤0.05). Principal component analysis revealed three principal components with eigenvalues >1 capturing 81.5% of the total variation. An agglomerative hierarchical clustering analysis, based on root trait variation, identified three genotype homogeneous groups (rescaled distance of 15) and 16 sub-groups (rescaled distance of 5). The chickpea genotypes characterised in this study with vastly different root properties could be used for further studies in glasshouses and field trials, and for molecular marker studies, gene mapping, and modelling simulations, ultimately aimed at breeding germplasm with root traits for improved adaptation to drought and other specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  14. Green-fuel-mediated synthesis of self-assembled NiO nano-sticks for dual applications—photocatalytic activity on Rose Bengal dye and antimicrobial action on bacterial strains

    Science.gov (United States)

    Iyyappa Rajan, P.; Vijaya, J. Judith; Jesudoss, S. K.; Kaviyarasu, K.; Kennedy, L. John; Jothiramalingam, R.; Al-Lohedan, Hamad A.; Vaali-Mohammed, Mansoor-Ali

    2017-08-01

    With aim of promoting the employability of green fuels in the synthesis of nano-scaled materials with new kinds of morphologies for multiple applications, successful synthesis of self-assembled NiO nano-sticks was achieved through a 100% green-fuel-mediated hot-plate combustion reaction. The synthesized NiO nano-sticks show excellent photocatalytic activity on Rose Bengal dye and superior antibacterial potential towards both Gram-positive and Gram-negative bacteria.

  15. Sediment dispersal pattern in the Bay of Bengal - evidence for commencement of Bengal Fan sedimentation

    Science.gov (United States)

    Krishna, K. S.; Ismaiel, M.; Karlapati, S.; Gopala Rao, D.; Mishra, J.; D, S.

    2015-12-01

    The sediment succession in the Bay of Bengal records signatures corresponding to India-Asia collision, regional climate, and erosional processes of the Himalayan orogeny and the Indian subcontinent. The Bengal Fan - world's largest submarine fan - has been long studied to understand the link between the Himalayan tectonics and Asian monsoon climate, but early phase information of the Himalaya erosion is not retrieved from the Indian Ocean due to lack of deep-core samples. Therefore, the missing corresponding signals hampered the understanding of coupled processes between tectonics, climate and erosion. Seismic reflection profiles and industrial drill wells from the western Bay of Bengal show two different modes of sediment deposition: initially Indian peninsular rivers discharged sediments to the ocean at a rate ~20 m/m.y. until Oligocene-Miocene time (~23 Ma) with the exception of two fairly-enhanced sediment pulses from 65 to 54 and again from 34 to 23 Ma; since 23 Ma the Ganges and Brahmaputra rivers added huge volumes of sediments to the bay with variable rates range from 40 to >1000 m/m.y. Using seismic stratigraphic technique we found a distinct increase in sediment discharge (~140 m/m.y.) at 23 Ma is an important age marker for the onset of Bengal Fan sedimentation as a coupled connection between the Himalayan tectonics and Asian climate. Further rise in sedimentation rate during the period 6.8 - 0.8 Ma is surprisingly not in agreement with the decrease in sediment rate reported at ODP Leg 116 sites in the distal Bengal Fan, but coincident with the change in monsoon intensity. Here we provide well constrained ages for the growth of the Bengal Fan, which can serve as benchmark for interactions between the Himalayan exhumation and Asian climate.

  16. Characterization and evolution of primary and secondary laterites in northwestern Bengal Basin, West Bengal, India

    Institute of Scientific and Technical Information of China (English)

    Sandipan Ghosh; Sanat K. Guchhait

    2015-01-01

    It is quite impossible to travel far in India without observing the remarkable fer-ruginous crust to which Buchanan in 1807 gave the name of laterite. In Indian peninsula, it is a post-Cretaceous stratigraphic succession with a polycyclic nature of evolution which marks the unconformity with recent Quaternary alluvium. There are perennial problems and research gaps in the investigation of laterites in India as well as in West Bengal:(1) deifning, identify-ing and classifying lateritic materials, (2) mode of formation of laterite and its other horizons, (3) determining the ages of laterites, (4) reliability of laterites as palaeoclimatic indicators, (5) identifying topographic requirements and pedogeomorphic processes for laterite formation, and (6) reconstructions of former lateritized landscapes. The formation of north-south lateritic hard crust (i.e. Rarh Bengal) on the Rajmahal Basalt Traps, Archean granite-gneiss, Gond-wana sediments, Paleogene gravels and older deltaic alluvium is analyzed here to resolve the aforesaid problems and to depict the variable characteristics of laterites with special reference to its tectono-climatic evolution in the northwestern marginal part of Bengal Basin. This paper reveals that the low-level secondary laterites (probably the Pliocene-Early Pleistocene age) of Rarh Bengal are composed of heterogeneous Fe-Al rich gravelly materials which were derived from the high-level primary laterites (probably the Eocene-Miocene age) of plateau since the Paleogene Period by the peninsular river system, following the underlying structure of Bengal Basin. Alongside the roles of drifting of Indian Plate, establishment of monsoon climate, neo-tectonic uplifts and re-lateritization of ferruginous shelf deposits are determined here to unearth the palaeogenesis of primary and secondary laterites in West Bengal.

  17. Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Varshney, Rajeev K; Thudi, Mahendar; Nayak, Spurthi N; Gaur, Pooran M; Kashiwagi, Junichi; Krishnamurthy, Lakshmanan; Jaganathan, Deepa; Koppolu, Jahnavi; Bohra, Abhishek; Tripathi, Shailesh; Rathore, Abhishek; Jukanti, Aravind K; Jayalakshmi, Veera; Vemula, Anilkumar; Singh, S J; Yasin, Mohammad; Sheshshayee, M S; Viswanatha, K P

    2014-02-01

    Analysis of phenotypic data for 20 drought tolerance traits in 1-7 seasons at 1-5 locations together with genetic mapping data for two mapping populations provided 9 QTL clusters of which one present on CaLG04 has a high potential to enhance drought tolerance in chickpea improvement. Chickpea (Cicer arietinum L.) is the second most important grain legume cultivated by resource poor farmers in the arid and semi-arid regions of the world. Drought is one of the major constraints leading up to 50% production losses in chickpea. In order to dissect the complex nature of drought tolerance and to use genomics tools for enhancing yield of chickpea under drought conditions, two mapping populations-ICCRIL03 (ICC 4958 × ICC 1882) and ICCRIL04 (ICC 283 × ICC 8261) segregating for drought tolerance-related root traits were phenotyped for a total of 20 drought component traits in 1-7 seasons at 1-5 locations in India. Individual genetic maps comprising 241 loci and 168 loci for ICCRIL03 and ICCRIL04, respectively, and a consensus genetic map comprising 352 loci were constructed ( http://cmap.icrisat.ac.in/cmap/sm/cp/varshney/). Analysis of extensive genotypic and precise phenotypic data revealed 45 robust main-effect QTLs (M-QTLs) explaining up to 58.20% phenotypic variation and 973 epistatic QTLs (E-QTLs) explaining up to 92.19% phenotypic variation for several target traits. Nine QTL clusters containing QTLs for several drought tolerance traits have been identified that can be targeted for molecular breeding. Among these clusters, one cluster harboring 48% robust M-QTLs for 12 traits and explaining about 58.20% phenotypic variation present on CaLG04 has been referred as "QTL-hotspot". This genomic region contains seven SSR markers (ICCM0249, NCPGR127, TAA170, NCPGR21, TR11, GA24 and STMS11). Introgression of this region into elite cultivars is expected to enhance drought tolerance in chickpea.

  18. Effects of gamma irradiation on the shoot length of Cicer seeds

    Energy Technology Data Exchange (ETDEWEB)

    Toker, Cengiz [Department of Field Crops, Faculty of Agriculture, Akdeniz University, TR-07059 Antalya (Turkey)]. E-mail: toker@akdeniz.edu.tr; Uzun, Bulent [Department of Field Crops, Faculty of Agriculture, Akdeniz University, TR-07059 Antalya (Turkey); Canci, Huseyin [Department of Field Crops, Faculty of Agriculture, Akdeniz University, TR-07059 Antalya (Turkey); Oncu Ceylan, F. [Department of Field Crops, Faculty of Agriculture, Akdeniz University, TR-07059 Antalya (Turkey)

    2005-08-01

    The effects of radiation on the shoot and root lengths of germinated seedling of irradiated seeds of Cicer species, i.e. three kabuli types and four desi types of cultivated chickpea (Cicer arietinum Ladiz.) and 2 annual wild types (C. reticulatum Ladiz. and C. bijugum K.H. Rech.) were investigated. The seeds were irradiated with a {sup 60}Co gamma source using 0, 200, 300 and 400 Gy doses at 1.66 kGy h{sup -1}. At 200 Gy minor effects could be observed, but at 400 Gy an obvious depression of shoot length was observed. The kabuli types were more affected than the desi ones. The critical dose that prevented the shoot and root elongation varied among species and also ranged from genotypes to genotype within species.

  19. Changes in photosynthetic carbon metabolism in senescent leaves of chickpea, Cicer arietinum L.

    OpenAIRE

    Chandrashekhar V. Murumkar; Prakash D Chavan

    2014-01-01

    Photosynthetic processes in mature and senescent leaves of chickpea (Cicer arietinum L.) have been compared. With age, leaf photosynthetic pigments viz. chlorophyll a, chlorophyll b and carotenoids, and rate of 14°C fixation were considerably affected. Analysis of δ13C, and short term photosynthetic products showed no major change in the path of photosynthetic carbon fixation. Study of long term photosynthetic 14C assimilation revealed that in old senescent leaves, 14C incorporation into orga...

  20. Gravity anomalies and crustal structure of the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Subrahmanyam, V; Krishna, K.S.; Murthy, I.V; Sarma, K.V.L; Desa, M.; Ramana, M.V; KameshRaju, K.A.

    The Bengal Fan is covered afresh by systematic geological and geophysical investigations by National Institute of Oceanography (NIO), India and a detailed free-air gravity map of the fan is prepared. The map shows two strong gravity lows - one...

  1. Primary production in the Bay of Bengal during August 1977

    Digital Repository Service at National Institute of Oceanography (India)

    Devassy, V.P.; Bhattathiri, P.M.A.; Radhakrishna, K.

    Primary production, chlorophyll @ia@@, phaeophytin, phytoplankton and particulate organic carbon (POC) were studied at 14 stations in the Bay of Bengal during August 1977. Column primary production, chlorophyll @ia@@, and phaeopigments varied from 0...

  2. Canonical sound speed profile for the central Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, T.V.R.; PrasannaKumar, S.; Somayajulu, Y.K.; Sastry, J.S.; De Figueiredo, R.J.P.

    Following Munk's canonical theory, an algorithm has been presented for computing sound channel parameters in the western and southern Bay of Bengal. The estimated canonical sound speed profile using these parameters has been compared with computed...

  3. Monosaccharide composition of suspended particles from the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Bhosle, N.B.; Sankaran, P.D.; Wagh, A.B.

    Neutral carbohydrates were determined as alditol acetates by capillary gas chromatography in the hydrolysates of suspended particulate samples (40) collected from 8 depths (approx 1 to 1,000 m) at 5 stations of the Bay of Bengal. Eight individual...

  4. Increased incidence of thoracic wall deformities in related Bengal kittens.

    Science.gov (United States)

    Charlesworth, Timothy M; Sturgess, Christopher P

    2012-06-01

    Clinical records made during routine vaccinations were compared between populations of domestic shorthair cats and Bengal kittens. An increased incidence (12/244) of thoracic wall deformity was detected amongst the Bengal kittens. Deformities detected were: pectus excavatum (five), unilateral thoracic wall concavity (six) and scoliosis (one). Five-generation pedigrees were analysed for the affected kittens that showed a high degree of common ancestry indicating the likelihood of a familial cause.

  5. Bay of Bengal Surface and Thermocline and the Arabian Sea

    Science.gov (United States)

    2014-09-30

    BoB) is affected by many contrasting water types. The strong monsoonal forcing induces a complex array of energetic meso-scale and sub-meso-scales...COMPLETED Argo data has been assembled to build a climatology (2003-2014) of the thermohaline stratification within the Bay of Bengal. This product ... IOD , hold promise as a simple, yet effective means of predicting an IOD event’. 10 IMPACT/APPLICATIONS The Bay of Bengal complex, energetic

  6. Development of ESTs from chickpea roots and their use in diversity analysis of the Cicer genus

    Directory of Open Access Journals (Sweden)

    Eshwar K

    2005-08-01

    Full Text Available Abstract Background Chickpea is a major crop in many drier regions of the world where it is an important protein-rich food and an increasingly valuable traded commodity. The wild annual Cicer species are known to possess unique sources of resistance to pests and diseases, and tolerance to environmental stresses. However, there has been limited utilization of these wild species by chickpea breeding programs due to interspecific crossing barriers and deleterious linkage drag. Molecular genetic diversity analysis may help predict which accessions are most likely to produce fertile progeny when crossed with chickpea cultivars. While, trait-markers may provide an effective tool for breaking linkage drag. Although SSR markers are the assay of choice for marker-assisted selection of specific traits in conventional breeding populations, they may not provide reliable estimates of interspecific diversity, and may lose selective power in backcross programs based on interspecific introgressions. Thus, we have pursued the development of gene-based markers to resolve these problems and to provide candidate gene markers for QTL mapping of important agronomic traits. Results An EST library was constructed after subtractive suppressive hybridization (SSH of root tissue from two very closely related chickpea genotypes (Cicer arietinum. A total of 106 EST-based markers were designed from 477 sequences with functional annotations and these were tested on C. arietinum. Forty-four EST markers were polymorphic when screened across nine Cicer species (including the cultigen. Parsimony and PCoA analysis of the resultant EST-marker dataset indicated that most accessions cluster in accordance with the previously defined classification of primary (C. arietinum, C. echinospermum and C. reticulatum, secondary (C. pinnatifidum, C. bijugum and C. judaicum, and tertiary (C. yamashitae, C. chrossanicum and C. cuneatum gene-pools. A large proportion of EST alleles (45% were only

  7. Changes in photosynthetic carbon metabolism in senescent leaves of chickpea, Cicer arietinum L.

    Directory of Open Access Journals (Sweden)

    Chandrashekhar V. Murumkar

    2014-01-01

    Full Text Available Photosynthetic processes in mature and senescent leaves of chickpea (Cicer arietinum L. have been compared. With age, leaf photosynthetic pigments viz. chlorophyll a, chlorophyll b and carotenoids, and rate of 14°C fixation were considerably affected. Analysis of δ13C, and short term photosynthetic products showed no major change in the path of photosynthetic carbon fixation. Study of long term photosynthetic 14C assimilation revealed that in old senescent leaves, 14C incorporation into organic acid and sugar fractions was enhanced.

  8. Purification and characterization of a poly(A)-binding protein from chickpea (Cicer arietinum) epicotyl.

    Science.gov (United States)

    Cheriyath, V; Balasubrahmanyam, A; Kapoor, H C

    2000-04-01

    A poly(A)-binding protein (PABP) with mol wt 72,000 has been purified from chickpea (Cicer arietinum) epicotyls by ammonium sulfate fractionation, Cibacron blue F3-GA and poly(A) agarose chromatography. The binding properties and the specificity of binding show that the purified protein is an analogue of PABPs in other eukaryotes. This PABP is highly susceptible to proteolysis and upon degradation forms a polypeptide fragment of mol wt 21,000 which has an independent poly(A) binding activity.

  9. Dialéctica y Retórica en los "Topica" de Cicerón

    OpenAIRE

    Guzmán Brito,Alejandro

    2010-01-01

    La obra que Cicerón editó el 44 a. C. bajo el título de "tópica" ha tenido una infuencia mayor en la Historia del Derecho, de la Lógica y de la Retórica. El presente trabajo explica los conceptos fundamentales que aparecen en aquel libro.

  10. Dialéctica y Retórica en los "Topica" de Cicerón

    OpenAIRE

    Guzmán Brito,Alejandro

    2010-01-01

    La obra que Cicerón editó el 44 a. C. bajo el título de "tópica" ha tenido una infuencia mayor en la Historia del Derecho, de la Lógica y de la Retórica. El presente trabajo explica los conceptos fundamentales que aparecen en aquel libro.

  11. Isolation and Biochemical Characterizations of Mid Gut Microbiota of Culex (Culex quinquefasciatus Mosquitoes in Some Urban Sub Urban & Rural Areas of West Bengal.

    Directory of Open Access Journals (Sweden)

    Rahul Kumar

    2013-06-01

    Full Text Available Mosquitoes, in general are medically important vectors of many diseases like Malaria, Dengue and Filariasis, which are a great challenge for public health in many countries. All animals and plants establish symbiotic relationship with microbes. Mosquitoes can be considered as an holobiont units in which the host (mosquito and its microbiota are involved in complex reciprocal multipartite interaction such as host reproduction and survival, protection against natural enemies. This naturally acquired microbial flora can modulate the mosquitos’ vectorial capacity by inhibiting the development of pathogen. But enough care has not been under taken regarding the biochemical characterization of Culex mosquitoes (Culex quinquefasciatus in West Bengal. Therefore a preliminary investigation have been undertaken for the determination of biochemical characterization such as gram staining, pattern of growth, detection of economically important enzyme as well as antibiotic susceptibility assay of midgut bacterial isolates of Culex (Culex quinquefasciatus in some urban, sub-urban and rural areas of West Bengal.

  12. Evaluation of Allelopathic Potential of Rumex dentatus Root Extract and Allelochemicals on Cicer arietinum

    Directory of Open Access Journals (Sweden)

    Hamed M. El-Shora

    2014-03-01

    Full Text Available The present study aimed to evaluate the allelopathic potential of root extract of Rumex dentatus L. and various allelochemicals on some physiological parameters in roots of Cicer arietinum L. The tested allelochemicals were benzoic, caffeic, cinnamic, ferulic, gallic, sinapic and vanillic acids. Seed germination of Cicer was inhibited by Rumex extract. Lipid peroxidation and hydrogen peroxide production increased gradually in response to extract concentration as well as allelochemicals treatment. The total soluble protein decreased whereas the total phenol increased under the various treatments. The activities of superoxide dismutase (SOD: 1.15.1.1 and catalase (CAT: 1.11.1.6 increased continuously with increasing extract concentration. However, peroxidase (POD: 1.11.1.7 increased sharply at 2% (w/v followed by reduction at the higher concentrations and reached 1.1 U g-1 fresh weight at 10% (w/v which was still higher than that of the control value. Ferulic acid was the most effective inducer for SOD activity followed by cinnamic acid. The POD activity increased remarkably particularly with cinnamic, benzoic and gallic acids. Sinapic, ferulic and coumaric acids enhanced CAT activity by 150.4%, 139.5% and 124.4%, respectively. The results reveal the possible use of R. dentatus as bioherbicide.

  13. Assembling a puzzle of dispersed retrotransposable sequences in the genome of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Staginnus, C; Desel, C; Schmidt, T; Kahl, G

    2010-12-01

    Several repetitive elements are known to be present in the genome of chickpea (Cicer arietinum L.) including satellite DNA and En/Spm transposons as well as two dispersed, highly repetitive elements, CaRep1 and CaRep2. PCR was used to prove that CaRep1, CaRep2, and previously isolated CaRep3 of C. arietinum represent different segments of a highly repetitive Ty3-gypsy-like retrotransposon (Metaviridae) designated CaRep that makes up large parts of the intercalary heterochromatin. The full sequence of this element including the LTRs and untranslated internal regions was isolated by selective amplification. The restriction pattern of CaRep was different within the annual species of the genus Cicer, suggesting its rearrangement during the evolution of the genus during the last 100 000 years. In addition to CaRep, another LTR and a non-LTR retrotransposon family were isolated, and their restriction patterns and physical localization in the chickpea genome were characterized. The LINE-like element CaLin is only of comparatively low abundance and reveals a considerable heterogeneity. The Ty1-copia-like element (Pseudoviridae) CaTy is located in the distal parts of the intercalary heterochromatin and adjacent euchromatic regions, but it is absent from the centromeric regions. These results together with earlier findings allow to depict the distribution of retroelements on chickpea chromosomes, which extensively resembles the retroelement landscape of the genome of the model legume Medicago truncatula Gaertn.

  14. Gram-Negative Flagella Glycosylation

    Directory of Open Access Journals (Sweden)

    Susana Merino

    2014-02-01

    Full Text Available Protein glycosylation had been considered as an eccentricity of a few bacteria. However, through advances in analytical methods and genome sequencing, it is now established that bacteria possess both N-linked and O-linked glycosylation pathways. Both glycosylation pathways can modify multiple proteins, flagellins from Archaea and Eubacteria being one of these. Flagella O-glycosylation has been demonstrated in many polar flagellins from Gram-negative bacteria and in only the Gram-positive genera Clostridium and Listeria. Furthermore, O-glycosylation has also been demonstrated in a limited number of lateral flagellins. In this work, we revised the current advances in flagellar glycosylation from Gram-negative bacteria, focusing on the structural diversity of glycans, the O-linked pathway and the biological function of flagella glycosylation.

  15. Antagonistic effect of brevicin on Gram positive and Gram negative ...

    African Journals Online (AJOL)

    B. Senthil Kumar

    activity on Gram positive and negative food borne bacteria. ... have been a common practice in the history of mankind .... To evaluate the thermal stability of the brevicin, the lyophilized ..... microgram quantities of protein utilizing the principle of protein-dye ... its effect on the sensory acceptability of cooked, sliced, vacuum-.

  16. Variability in the distribution of phenolic compounds in milled fractions of chickpea and horse gram: evaluation of their antioxidant properties.

    Science.gov (United States)

    Sreerama, Yadahally N; Sashikala, Vadakkoot B; Pratape, Vishwas M

    2010-07-28

    Seed coat, cotyledon and embryonic axe fractions of chickpea (Cicer arietinum L.) and horse gram (Macrotyloma uniflorum L.) were evaluated for their phenolic composition in relation to antioxidant activities. Compositional analysis of phenolics by HPLC revealed a wide variation in the distribution of flavonols, isoflavones, phenolic acids and anthocyanins among these legume fractions. Although cotyledon fractions of both the legumes were rich in phenolic acids, the concentrations of flavonols such as quercetin, kaempferol, and myricetin were significantly (p chickpea, it was present exclusively in the embryonic axe fraction of horse gram at levels greater than daidzein. Furthermore, cyanidin, petunidin, and delphinidin were detected in seed coat and embryonic axe fractions but not in cotyledons. In addition to these three anthocyanins, malvidin was found only in the horse gram seed coat fraction. Seed coat fractions having higher total phenolic indexes were found to be the most active 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavengers (IC(50) 13.1 to 18.6 microg/mL) followed by embryonic axe and cotyledon fractions (IC(50) 15.4 to 34.2 microg/mL). Hydrogen peroxide (H(2)O(2)) scavenging capacities of cotyledons, embryonic axe and seed coats were 12.3, 34.1 and 78.6% for chickpea and 15.1, 56.8 and 92.6% for horse gram, respectively. The multiple antioxidant activity of horse gram and chickpea fractions was evident, as they also possessed reducing power and ferrous ion-chelating potency. These results contributed to the understanding of the relationships between major phenolic compounds and antioxidant activities of legumes and provided useful information for effective utilization of legume-milled fractions as functional food ingredients for promoting health.

  17. Electron microscopic, genetic and protein expression analyses of Helicobacter acinonychis strains from a Bengal tiger.

    Science.gov (United States)

    Tegtmeyer, Nicole; Rivas Traverso, Francisco; Rohde, Manfred; Oyarzabal, Omar A; Lehn, Norbert; Schneider-Brachert, Wulf; Ferrero, Richard L; Fox, James G; Berg, Douglas E; Backert, Steffen

    2013-01-01

    Colonization by Helicobacter species is commonly noted in many mammals. These infections often remain unrecognized, but can cause severe health complications or more subtle host immune perturbations. The aim of this study was to isolate and characterize putative novel Helicobacter spp. from Bengal tigers in Thailand. Morphological investigation (Gram-staining and electron microscopy) and genetic studies (16SrRNA, 23SrRNA, flagellin, urease and prophage gene analyses, RAPD DNA fingerprinting and restriction fragment polymorphisms) as well as Western blotting were used to characterize the isolated Helicobacters. Electron microscopy revealed spiral-shaped bacteria, which varied in length (2.5-6 µm) and contained up to four monopolar sheathed flagella. The 16SrRNA, 23SrRNA, sequencing and protein expression analyses identified novel H. acinonychis isolates closely related to H. pylori. These Asian isolates are genetically very similar to H. acinonychis strains of other big cats (cheetahs, lions, lion-tiger hybrid and other tigers) from North America and Europe, which is remarkable in the context of the great genetic diversity among worldwide H. pylori strains. We also found by immunoblotting that the Bengal tiger isolates express UreaseA/B, flagellin, BabA adhesin, neutrophil-activating protein NapA, HtrA protease, γ-glutamyl-transpeptidase GGT, Slt lytic transglycosylase and two DNA transfer relaxase orthologs that were known from H. pylori, but not the cag pathogenicity island, nor CagA, VacA, SabA, DupA or OipA proteins. These results give fresh insights into H. acinonychis genetics and the expression of potential pathogenicity-associated factors and their possible pathophysiological relevance in related gastric infections.

  18. Electron microscopic, genetic and protein expression analyses of Helicobacter acinonychis strains from a Bengal tiger.

    Directory of Open Access Journals (Sweden)

    Nicole Tegtmeyer

    Full Text Available Colonization by Helicobacter species is commonly noted in many mammals. These infections often remain unrecognized, but can cause severe health complications or more subtle host immune perturbations. The aim of this study was to isolate and characterize putative novel Helicobacter spp. from Bengal tigers in Thailand. Morphological investigation (Gram-staining and electron microscopy and genetic studies (16SrRNA, 23SrRNA, flagellin, urease and prophage gene analyses, RAPD DNA fingerprinting and restriction fragment polymorphisms as well as Western blotting were used to characterize the isolated Helicobacters. Electron microscopy revealed spiral-shaped bacteria, which varied in length (2.5-6 µm and contained up to four monopolar sheathed flagella. The 16SrRNA, 23SrRNA, sequencing and protein expression analyses identified novel H. acinonychis isolates closely related to H. pylori. These Asian isolates are genetically very similar to H. acinonychis strains of other big cats (cheetahs, lions, lion-tiger hybrid and other tigers from North America and Europe, which is remarkable in the context of the great genetic diversity among worldwide H. pylori strains. We also found by immunoblotting that the Bengal tiger isolates express UreaseA/B, flagellin, BabA adhesin, neutrophil-activating protein NapA, HtrA protease, γ-glutamyl-transpeptidase GGT, Slt lytic transglycosylase and two DNA transfer relaxase orthologs that were known from H. pylori, but not the cag pathogenicity island, nor CagA, VacA, SabA, DupA or OipA proteins. These results give fresh insights into H. acinonychis genetics and the expression of potential pathogenicity-associated factors and their possible pathophysiological relevance in related gastric infections.

  19. The Contextual Issues in the Islamic Architecture of Bengal Mosques

    Directory of Open Access Journals (Sweden)

    Saiful Hasan Tariq

    2013-06-01

    Full Text Available The history of the settlement in Bengal region is probably more than 3,000 years old. The Muslim rule was introduced by the invasionof Ikhtiyar Uddin Muhammad bin Bakhtiyar Khilji at around 1204 A.D. In the later years lots of Muslim rulers came in this continentand contributed in the construction of Masjid, Madrasa, and Mausoleums. Unique building materials, climatic considerations, social and contextual impact on spatial quality has given such prominence in these structures that it has become identical as “Bengal Style” among the other styles practiced in Indian sub-continent and outside of India in other Muslim countriesduring 12th-15th century. This paper is an outcome of the search on contextual issues of Bengal mosques practiced from 12th -15th century and put light on the existing practice of mosque architecture in Bangladesh.

  20. PREVALENCE OF BOVINE VIRAL DIARRHOEA VIRUS IN WEST BENGAL, INDIA

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    Reshmi Ghosh

    2015-12-01

    Full Text Available Bovine Viral Diarrhea (BVD is one of the most economically important diseases in cattle. The present study was undertaken to diagnose the persistently infected (PI animals by AntigenELISA and Reverse Transcriptase PCR using serum samples from organized farms as well as rural areas of West Bengal. The results showed that out of 964 serum samples tested 07 (0.73% was positive for BVDV by Antigen-ELISA. For further confirmation, RNA was extracted from the positive samples and RT-PCR was performed with 5' UTR specific primers which showed 294 bp amplicons. This finding showed circulation of BVDV in cattle in West Bengal, India.

  1. An island chain lost in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Srinivas, K.; Krishna, K.S.; Ismaiel, M.; Mishra, J.; Saha, D.

    SCIENCE, VOL. 112, NO. 6, 25 MARCH 2017 1095 An island chain lost in the Bay of Bengal K. Srinivas, K. S. Krishna, M. Ismaiel, J. Mishra and D. Saha A voyage from Chennai across the Bay of Bengal takes one eventually to the Andaman Islands...- placement time (~80 Ma); b, Present. The seismic profile crosses the Ridge approxi- mately along 15°N lat. RESEARCH NEWS CURRENT SCIENCE, VOL. 112, NO. 6, 25 MARCH 2017 1096 covered with thin veneer of sediments. The sediments on the western flank...

  2. EDTA enhanced phytoremediation of copper contaminated soils using chickpea (Cicer aeritinum L.).

    Science.gov (United States)

    Kambhampati, Murty S; Vu, Van Tu

    2013-09-01

    The goal of this research was to determine whether or not chickpea (Cicer arietinum L.), commonly known as Garbanzo beans, is a hyper accumulator for copper (Cu) in contaminated soils amended with EDTA. Statistical analysis (2 tailed Pearson Correlation) revealed significant correlations between: Translocation index and stem biomass (r = 0.859**; p < 0.01); Tolerance index and stem biomass (r = 0.762**; p < 0.01); and bioconcentration factor of stem/soil and soil Cu concentration (r = -0.545*; p < 0.05). Therefore, C. arietinum seems to be a cost-effective and environmentally friendly hyperaccumulator for Cu at 100 ppm Cu and 10 mM EDTA.

  3. Influence of Endogenous Cytokinins on Reverse Mobilization in Cotyledons of Cicer arietinum L

    Science.gov (United States)

    Muñoz, Jose Luis; Martin, Luisa; Nicolas, Gregorio; Villalobos, Nieves

    1990-01-01

    The embryonic axis plays an essential role in the mobilization of the main reserves of the cotyledons of seeds of Cicer arietinum L. cv Castellana. This control by the axis of the metabolism of the storage products of the cotyledons largely takes place through the cytokinins, which are transported from the embryonic axis to the cotyledons where the mobilization of reserves begins. The principal regulatory role of the endogenous cytokinins concerns the metabolism of carbohydrates and proteins; there is less influence on lipid metabolism. However, each cytokinin seems to have a different role in the mobilization processes. The glucosides, glucosyl zeatin riboside, and glucosyl zeatin act only as storage forms of the hormones. Zeatin riboside affects mainly the mobilization of carbohydrates and has less effect on protein mobilization. Zeatin regulates both the mobilization of carbohydrates and that of proteins and is more marked in the latter case. PMID:16667549

  4. Chickpea (Cicer arietinum L.) physiological, chemical and growth responses to irrigation with saline water

    DEFF Research Database (Denmark)

    Hirich, Abdelaziz; Omari, Halima El; Jacobsen, Sven-Erik

    2014-01-01

    Chickpea (Cicer arietinum L.) is the third most important food legume grown in the world and a favourite food crop in Morocco. Morocco is a semi-arid country with limited fresh water resources. In order to meet the food demand, increasing attention is being given to the use of non......-conventional water resources such as saline/brackish water and treated waste water for irrigation. With this in mind, an experiment was conducted in the south of Morocco to investigate the effect of irrigation with saline water on a local variety of chickpea. Irrigation with water of different salinity levels...... was carried out on pot experiments. Differences in water uptake and plant growth; as well as proline, soluble sugar, and Na+ and K+ contents of the plant were quantified. The results showed a negative relationship between increasing water salinity and most of the measured plant growth parameters. Irrigation...

  5. 28-Homobrassinolide protects chickpea (Cicer arietinum) from cadmium toxicity by stimulating antioxidants

    Energy Technology Data Exchange (ETDEWEB)

    Hasan, S.A. [Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, U.P. (India); Hayat, S. [Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, U.P. (India)], E-mail: shayat@lycos.com; Ali, B.; Ahmad, A. [Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh 202002, U.P. (India)

    2008-01-15

    In the present experiment the seeds of Cicer arietinum (L.) cv. Uday were inoculated with specific Rhizobium grown in sandy loam soil and were allowed to grow for 15 days. At this stage, the seedlings were supplied with 0, 50, 100 or 150 {mu}M of cadmium in the form of cadmium chloride and sprayed with 0.01 {mu}M of 28-homobrassinolide (HBL) at 30-day stage. The data indicated that plant fresh and dry mass, number of nodules, their fresh and dry mass, leghemoglobin content, nitrogen and carbohydrate content in the nodules, leaf chlorophyll content, nitrate reductase and carbonic anhydrase activities decreased proportionately with the increasing concentrations of cadmium but the content of proline and the activities of catalase, peroxidase and superoxide dismutase increased. The ill effect, generated by cadmium, was overcome if the stressed plants were sprayed with HBL. - The cadmium toxicity can be overcome by the foliar application of 28-homobrassinolide.

  6. Incorporation of sulfide ions into the cadmium(II) thiolate cluster of Cicer arietinum metallothionein2.

    Science.gov (United States)

    Wan, Xiaoqiong; Freisinger, Eva

    2013-01-18

    The plant metallothionein2 from Cicer arietinum (chickpea), cic-MT2, is known to coordinate five divalent metal ions such as Zn(II) or Cd(II), which are arranged in a single metal thiolate cluster. When the Zn(II) form of the protein is titrated with Cd(II) ions in the presence of sulfide ions, an increased Cd(II) binding capacity and concomitant incorporation of sulfide ions into the cluster are observed. The exact stoichiometry of this novel cluster, its spectroscopic properties, and the significantly increased pH stability are analyzed with different techniques, including UV and circular dichroism spectroscopy and colorimetric assays. Limited proteolytic digestion provides information about the spacial arrangement of the cluster within the protein. Increasing the Cd(II) scavenging properties of a metallothionein by additionally recruiting sulfide ions might be an economic and very efficient detoxification strategy for plants.

  7. Dissipation of pendimethalin in soil and its residues in chickpea (Cicer arietinum L.) under field conditions.

    Science.gov (United States)

    Sondhia, Shobha

    2012-11-01

    Disappearance of pendimethalin in the soil of chickpea (Cicer arietinum L.) at 0-110 days, and terminal residues in plant samples have been studied under field conditions. Pendimethalin was applied as pre-emergence herbicide at 750, 350 and 180 g a.i. ha(-1) in winter, in chickpea crop. The dissipation of pendimethalin in the chickpea field soil conditions followed first order kinetics showing a half-life of 11.23 days averaged over all doses. Low pendimethalin residues were found in plant samples. 0.025, 0.015, <0.001 μg g(-1) residues of pendimethalin were found in grains at 750, 350 and 185 g a.i. ha(-1) treatments, respectively. Much lower pendimethalin residues were found in straw viz. 0.015 to <0.001 μg g(-1) at 750, 350 and 185 g a.i. ha(-1) treatments, respectively.

  8. Short communication. Response of chickpea (Cicer arietinum L.) to soil zinc application

    Energy Technology Data Exchange (ETDEWEB)

    Valenciano, J. B.; Miguelez-Frade, M. M.; Marcel, V.

    2009-07-01

    The response of chickpea (Cicer arietinum) to Zn nutrition was studied in pot experiments under natural conditions using four acid soils of northwest Spain during 2007 and 2008. Five concentrations of Zn (0, 1, 2, 4 and 8 mg Zn pot{sup -}1) were added to the pots as Zn chelate. Chickpea responded to the soil Zn applications and there were highly significant differences between soils. At maturity plants fertilized with Zn had greater total dry matter production mainly due to increments in pods weight. The lowest yield (2.65 g plant{sup -}1) was obtained from 0 mg Zn pot{sup -}1, while the highest yield (3.52 g plant{sup -}1) was recorded at 4 mg Zn pot{sup -}1. The increased yields in Zn applied plants was the result of increased number of pods per plant. Furthermore, this yield component was closely correlated with the seed yield. (Author) 22 refs.

  9. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

    Science.gov (United States)

    Varshney, Rajeev K; Song, Chi; Saxena, Rachit K; Azam, Sarwar; Yu, Sheng; Sharpe, Andrew G; Cannon, Steven; Baek, Jongmin; Rosen, Benjamin D; Tar'an, Bunyamin; Millan, Teresa; Zhang, Xudong; Ramsay, Larissa D; Iwata, Aiko; Wang, Ying; Nelson, William; Farmer, Andrew D; Gaur, Pooran M; Soderlund, Carol; Penmetsa, R Varma; Xu, Chunyan; Bharti, Arvind K; He, Weiming; Winter, Peter; Zhao, Shancen; Hane, James K; Carrasquilla-Garcia, Noelia; Condie, Janet A; Upadhyaya, Hari D; Luo, Ming-Cheng; Thudi, Mahendar; Gowda, C L L; Singh, Narendra P; Lichtenzveig, Judith; Gali, Krishna K; Rubio, Josefa; Nadarajan, N; Dolezel, Jaroslav; Bansal, Kailash C; Xu, Xun; Edwards, David; Zhang, Gengyun; Kahl, Guenter; Gil, Juan; Singh, Karam B; Datta, Swapan K; Jackson, Scott A; Wang, Jun; Cook, Douglas R

    2013-03-01

    Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea--desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication.

  10. FUNCTIONAL PROPERTIES OF DEFATTED CHICKPEA (CICER ARIETINUM, L. FLOUR AS INFLUENCED BY THERMOPLASTIC EXTRUSION

    Directory of Open Access Journals (Sweden)

    Maria Filomena Claret Fernandes de Aguiar VALIM

    2009-07-01

    Full Text Available

    Defatted chickpea (Cicer arietinum, L flour was submitted to thermoplastic extrusion at three feed moisture levels (13%, 18% and 27%. The functional properties of raw and extruded flours were investigated. The nitrogen solubility index of raw chickpea flour was minimum at pH 4.0 but increased at both lower and higher pHs. Extrusion reduced nitrogen solubility drastically for all feed moisture levels. Water and oil absorption capacity were significantly (p O < 05 increased after extrusion treatment. Foam stability could be improved by extrusion and was positively influenced by alkaline pH. It was also verified that extrusion cooking increased significantly (p O < 05 the emulsifying capacity of the extruded flour with 13% moisture level in water.

  11. Fly-ash induced synthesis of phytochelatins in chickpea (Cicer arietinum L.) plants.

    Science.gov (United States)

    Gupta, D K; Rai, U N; Tripathi, R D; Sinha, S; Rai, P; Inouhe, M

    2005-07-01

    Phytochelatins and related metabolites (cysteine and GSH) were found to be induced in the shoots of two varieties of Cicer arietinum viz., CSG-8962 and C-235 grown under different amendments of fly-ash with garden soil and press mud. Cysteine, GSH, PCs and its speciation were found in higher concentrations in amended fly-ash than in the control 100% soil. Two species of metal binding peptides i.e., PC2 and PC4 were found in both varieties and in amendments, however, their concentration varied depending upon the fly-ash concentrations in both amendments. Further, var. CSG-8962 was found more tolerant than var. C-235 because of higher concentrations of PCs and related metabolites.

  12. Changes in the inorganic status and enzyme activities in senescent leaves of chickpea, Cicer arietinum L.

    Directory of Open Access Journals (Sweden)

    Chandrashekkhar V. Murumkar

    2014-01-01

    Full Text Available The changes in the level of some inorganic constituents and the activities of some important enzyme systems in senescent leaves of chickpea (Cicer arietinum L. have been studied. In senescent leaves, a marked decline in the potassium and phosphorus contents was evident which was accompanied by the accumulation of calcium, silicon, chloride and manganese. Leaf senescence was accompanied by a great increase in hydrolytic processes, as revealed by the increase in the activities of acid phosphatase, alkaline phosphatase, ATPase, inorganic pyrophosphatase and 3-phosphoglycerate phosphatase. The activities of nitrogen metabolism enzymes, namely nitrate reductase, nitrite reductase, glutamine synthetase and alanine aminotransferase, and of photorespiratory enzymes -- phosphoglycolate phosphatase, glycolate oxidase and catalase, were lower in senescent leaves. Leaf senescence was further associated with an increase in the activities of peroxidase and polyphenol oxidase, a considerable depression in pyruvate kinase activity, and a slight elevation in aldolase activity.

  13. Potential impact of rising atmospheric CO2 on quality of grains in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Saha, Saurav; Chakraborty, Debashis; Sehgal, Vinay K; Pal, Madan

    2015-11-15

    Experiments were conducted in open-top chambers to assess the effect of atmospheric CO2 enrichment (E-CO2) on the quality of grains in chickpea (Cicer arietinum L.) crop. Physical attributes of the grains was not affected, but the hydration and swelling capacities of the flour increased. Increase in carbohydrates and reduction in protein made the grains more carbonaceous (higher C:N) under E-CO2. Among other mineral nutrients, K, Ca and Zn concentrations decreased, while P, Mg, Cu, Fe, Mn and B concentrations did not change. The pH, bulk density and cooking time of chickpea flour remained unaffected, although the water absorption capacity of flour increased and oil absorption reduced. Results suggest that E-CO2 could affect the grain quality adversely and nutritional imbalance in grains of chickpea might occur.

  14. Crystal structure of a plant albumin from Cicer arietinum (chickpea) possessing hemopexin fold and hemagglutination activity.

    Science.gov (United States)

    Sharma, Urvashi; Katre, Uma V; Suresh, C G

    2015-05-01

    Crystal structure of a reported PA2 albumin from Cicer arietinum shows that it belongs to hemopexin fold family, has four beta-propeller motifs and possesses hemagglutination activity, making it different from known legume lectins. A plant albumin (PA2) from Cicer arietinum, presumably a lectin (CAL) owing to its hemagglutination activity which is inhibited by complex sugars as well as glycoproteins such as fetuin, desialylated fetuin and fibrinogen. The three-dimensional structure of this homodimeric protein has been determined using X-ray crystallography at 2.2 Å in two crystal forms: orthorhombic (P21212) and trigonal (P3). The structure determined using molecular replacement method and refined in orthorhombic crystal form reached R-factors R free 22.6 % and R work 18.2 % and in trigonal form had 22.3 and 17.9 % in the resolution range of 20.0-2.2 and 35.3-2.2 Å, respectively. Interestingly, unlike the known legume lectin fold, the structure of this homodimeric hemagglutinin belonged to hemopexin fold that consisted of four-bladed β-propeller architecture. Each subunit has a central cavity forming a channel, inside of which is lined with hydrophobic residues. The channel also bears binding sites for ligands such as calcium, sodium and chloride ions, iodine atom in the case of iodine derivative and water molecules. However, none of these ligands seem important for the sugar recognition. No monosaccharide sugar specificity could be detected using hemagglutination inhibition. Chemical modification studies identified a potential sugar-binding site per subunit molecule. Comparison of C-alpha atom positions in subunit structures showed that the deviations between the two crystal forms were more with respect to blades I and IV. Differences also existed between subunits in two forms in terms of type and site of ligand binding.

  15. De Divinatione de Cicerón en su contexto político y religioso

    Directory of Open Access Journals (Sweden)

    Diony González Rendón

    2010-01-01

    Full Text Available En medio de la ya desgastada relación que se daba en Roma entre religión y política a mediados de la década de los años 40.a.C, Cicerón escribió un diálogo sobre la religión llamado De Divinatione, que en más de dos libros, presenta un argumento que se sustenta específicamente en el tema de la adivinación. En este diálogo el autor latino reprueba y ataca fuertemente al final del tratado las creencias supersticiosas que se practicaban en esta época. Los magistrados romanos ya no recurrían a los arúspices para consultar los signos divinos en beneficio del Estado, sino que los manipulan para alcanzar sus intereses políticos. Pero en medio de esta fuerte reprobación por parte de Cicerón, también hay un intento por preservar y propagar la religión verdadera y defender las costumbres de los antepasados que han sido consagradas por el tiempo, la mos maiorum.Amidst an already deteriorated relationship between religion and politics in Rome (40 BC, Cicero wrote a dialogue about religion called De Divinatione. The treatise is composed of two books in which Cicero addresses the subject of divination. At the end of this dialogue, he argues against the superstitious beliefs of his time, when the Roman magistrates, on behalf of the state, did not consult the auspices to read the divine signs anymore. Instead, they manipulated them to achieve their own political goals. Nevertheless, and despite of Cicero’s determined condemnation of divination, there was also an attempt to preserve and spread the true religion, and defend the immemorial ancestors’ customs, mos maiorum.

  16. Purification and characterization of a 29 kDa poly(A)-binding protein from chickpea (Cicer arietinum) epicotyl.

    Science.gov (United States)

    Cheriyath, V; Balasubrahmanyam, A; Kapoor, H C

    2001-08-01

    A poly(A)-binding protein (PABP) with mol wt 29,000 has been purified from chickpea (Cicer arietinum) epicotyl by ammonium sulfate fractionation and Cibacron blue F3-GA chromatography, making a complex with poly(A) and elution of PABP-poly(A) complex at 45 degrees C from oligo d(T)-cellulose. The elution pattern and binding properties show that the purified protein is different from the PABP (mol. wt 72,000) reported earlier from our laboratory.

  17. Gramática Hipertextual

    Directory of Open Access Journals (Sweden)

    Francilaine Munhoz Moraes

    2011-07-01

    Full Text Available No meio digital, a construção da notícia se dá pelo hipertexto. Uma linguagem própria ao suporte consolida-se nas duas últimas décadas. Este artigo se dedica a discutir regularidades linguísticas do discurso jornalístico na web. Se há uma linguagem peculiar ao meio, existe também uma gramática correspondente: a gramática hipertextual. Nesse viés, levantamos traços linguísticos da estrutura sintático-semântica, com base na organização da informação em páginas noticiosas eletrônicas. 

  18. Ecological genetic divergence of the fungal pathogen Didymella rabiei on sympatric wild and domesticated Cicer spp. (Chickpea).

    Science.gov (United States)

    Frenkel, Omer; Peever, Tobin L; Chilvers, Martin I; Ozkilinc, Hilal; Can, Canan; Abbo, Shahal; Shtienberg, Dani; Sherman, Amir

    2010-01-01

    For millennia, chickpea (Cicer arietinum) has been grown in the Levant sympatrically with wild Cicer species. Chickpea is traditionally spring-sown, while its wild relatives germinate in the autumn and develop in the winter. It has been hypothesized that the human-directed shift of domesticated chickpea to summer production was an attempt to escape the devastating Ascochyta disease caused by Didymella rabiei. We estimated genetic divergence between D. rabiei isolates sampled from wild Cicer judaicum and domesticated C. arietinum and the potential role of temperature adaptation in this divergence. Neutral genetic markers showed strong differentiation between pathogen samples from the two hosts. Isolates from domesticated chickpea demonstrated increased adaptation to higher temperatures when grown in vitro compared with isolates from the wild host. The distribution of temperature responses among progeny from crosses of isolates from C. judaicum with isolates from C. arietinum was continuous, suggesting polygenic control of this trait. In vivo inoculations of host plants indicated that pathogenic fitness of the native isolates was higher than that of their hybrid progeny. The results indicate that there is a potential for adaptation to higher temperatures; however, the chances for formation of hybrids which are capable of parasitizing both hosts over a broad temperature range are low. We hypothesize that this pathogenic fitness cost is due to breakdown of coadapted gene complexes controlling pathogenic fitness on each host and may be responsible for maintenance of genetic differentiation between the pathogen demes.

  19. The biology of the Arabian Sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Gauns, M.

    This article focusses on the variability in physics and chemistry of the region and investigate its influence on the biology. This article is largely based on the recent observations made during the India JGOFS and BOBPS (Bay of Bengal Process Study...

  20. Waves off Gopalpur, northern Bay of Bengal during cyclone Phailin.

    Digital Repository Service at National Institute of Oceanography (India)

    Amrutha, M.M.; SanilKumar, V.; Anoop, T.R.; Nair, T.M.B.; Nherakkol, A.; Jeyakumar, C

    The wave statistical parameters during Cyclone Phailin which crossed the northern Bay of Bengal are described based on the Directional Waverider buoy-measured wave data from 8 to 13 October 2013. On 12 October 2013, the cyclone passed within 70 km...

  1. Nitrous oxide in the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Naqvi, S.W.A.; Jayakumar, D.A.; Nair, M.; DileepKumar, M.; George, M.D.

    Extensive observations on nitrous oxide (N@d2@@O) in the atmosphere and waters of the western Bay of Bengal during March-April 1991 yield surface saturations and atmospheric fluxes ranging from 89.3 to 213.9% (mean 125.2%), and from 0.10 to 10...

  2. Upwelling features near Sri Lanka in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    ShreeRam, P.; Rao, L.V.G.

    , the southwest monsoon in summer and the northeast monsoon in winter. The wind stress associated with these winds cause mass drift of oceanic waters leading to upwelling and downwelling. The upwelling features in the Bay of Bengal with a special mention about...

  3. A subsurface cyclonic eddy in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Babu, M.T.; PrasannaKumar, S.; Rao, D.P.

    CTD data collected from the Northwestern Bay of Bengal during late July 1984 reveal the existence of a cold core subsurface eddy centred at 17 degrees 40'N and 85 degrees 19'E. The thermal structure observed across the eddy indicate...

  4. Late Quaternary sedimentation in eastern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Chauhan, O; Mascarenhas, A; Paropkari, A; Rao, Ch.M.

    This study presents variations in various size measures, calcium carbonate, organic carbon, clay mineralogy and major and trace elements in a core (5.40 m long, 2713 m depth) from the eastern Bay of Bengal. On a CM diagram, the sediments of the core...

  5. Spectral wave characteristics off Gangavaram, Bay of Bengal.

    Digital Repository Service at National Institute of Oceanography (India)

    SanilKumar, V.; Dubhashi, K.K.; Nair, T.M.B.

    Spectral wave characteristics were studied based on waves measured for 1 year during 2010 off Gangavaram, Bay of Bengal. Maximum wave height of 5.2 m was observed on 19 May 2010 due to the influence of cyclonic storm LAILA. The wave spectrum...

  6. Septic Abortion Managed in a Tertiary Hospital in West Bengal

    African Journals Online (AJOL)

    a cross-sectional study carried out in Burdwan Medical College and Hospital in West Bengal between July 2011 and June 2012. On ... The modal age group of the patients was 15-25 years (49.5%). Majority of ... Address for correspondence.

  7. Sub-littoral meiobenthos of the northeastern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Rodrigues, C.L.; Harkantra, S.N.; Parulekar, A.H.

    super(3)m/2 (median = 31.45 x 10 super(3)) Distribution was contagious with varied fauna in the nearshore region On the basis of metabolic index, the food requirement of the benthic community (macro+meio) in the Bay of Bengal was found to be lower than...

  8. Characteristic mixing triangles in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Varkey, M.J.; Sastry, J.S.

    Temperature-salinity structures in the inner part of Bay of Bengal showed complete mixing processes in the upper bay, less than about 600 m can be characterisEd. by a mixing triangle constitutEd. by three characteristic water properties. In outer...

  9. Preparation, Biodegradation of Coconut Oil Driven Chemically Modified Bovine Serum Albumin Microparticles of Encapsulated Cicer arietinum Amylase and Study of Their Application in Washing Detergents

    Directory of Open Access Journals (Sweden)

    Kirti Rani

    2014-10-01

    Full Text Available In present work, Cicer arietinum amylase was encapsulated by emulsification through covalent coupling by glutaraldehyde into chemically modified bovine serum albumin. Biodegradation of coconut oil driven emulsified bovine serum albumin encapsulated Cicer arietinum amylase was carried out by the alkaline protease for its controlled and sustained release of encapsulated enzyme from prepared microparticles of encapsulated Cicer arietinum amylase and its stability increased up to 6 months as compared to free enzyme. Its biodegradation was carried out by the using different concentration of alkaline protease (5U, 10U, 15U, 20U, 25U, 30U, 35U, 40U. Further, this coconut oil driven chemically modified bovine serum albumin microparticles of encapsulated Cicer arietinum amylase with alkaline protease were used with detergents for washing of stained cloths which have rust, gel pen ink, grease and chocolate strains. These chosen strains are very commonly present on uniforms of school going children which are very tough upon drying, hence, not to be easily vanish with well known brand detergents upon in one wash. But, the mixture solution of coconut oil driven chemically modified bovine serum albumin microparticles of encapsulated Cicer arietinum amylase along with alkaline protease were used with detergents powder for washing of these dry tough strains (rust, gel pen ink, grease and chocolate strains leads to vanishing these strains very fast with absolute clear results were found as compared to results of washing of stained cloths with detergents only.

  10. Water use, growth and yield of green gram under rainfed upland crop sequences in Gangetic Plains of Indian sub-tropics

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    A field experiment was conducted to study the effect of different crop sequences on water use, growth and yield of green gram (Vigna radiata (L) Wilezek) during 1992-93 and 1993-94 under rainfed upland condition in Indo-Gangetic plains of West Bengal. Green gram sown in the month of March as pre-rainy (summer) season crop, as and when the winter crops vacated the land, produced highest dry matter of 372 gm-2 which was significantly highest in black gram-yellow sarson sequence.The results of the field experimentation revealed that green gram gave highest grain yield to the extent of 10.80 q/ha when sown after black gram (rainy season) followed by yellow sarson (winter season) while the crop produced 10.63 q/ha under sesame-yellow sarson sequence. Highest water use of 267mm was achieved in green gram under black gram-yellow sarson sequence and the crop gave water use efficiency of 4.07 kg ha-1mm-1 under black gram-yellow sarson sequences.

  11. Literacy Rates and its Impact on Birth Rates in Nadia District, West Bengal, India

    Directory of Open Access Journals (Sweden)

    Mahadeb Ghosh

    2016-11-01

    Full Text Available Equality in socio-economic component is essential for human development and social change. Educational inequality reduces economic growth and women's empowerment on the one hand and increases birth rate on the other. In population studies, it has been established that educational level is collinearly related with demographic behaviour. This study aims to investigate inequalities in literacy rates and its impact on birth rates in Nowpara-I Gram Panchayat (GP located in the Krishnagar II C.D. Block, Nadia District of West Bengal using a household survey conducted in 356 households among women aged 49 and above in triangulation with secondary data. The aim of this study is to explore the causes of the spatial inequalities in education and its effect on spatial variations in birth rates. The key finding suggest that in Nowpara-I, negative relationships exist between female education and birth rate because education has a positive impact on empowerment, late marriage, use of contraceptives and family size.

  12. Effects of garlic supplementation on parasitic infestation, live weight, and hematological parameters in Black Bengal goat

    Directory of Open Access Journals (Sweden)

    Mir Md. Iqbal Hasan

    2015-09-01

    Full Text Available This study was conducted to determine the effects of garlic on egg per gram (EPG count of feces for gastrointestinal parasites, live weight, and hematological parameters in Black Bengal goat. A total of 18 dry does of 18-22 months of age were divided into 3 groups as T0, T1 and T2; where, each group comprised of 6 goats. The goats of T0 were feed with normal feeds, whereas the goats of T1 and T2 were fed with normal feeds plus 25 mL and 50 mL of 10% water solution of garlic twice per day, respectively for 60 days. The EPG count was performed by McMaster counting chamber, and live weight was measured by digital electric balance. EPG count for gastrointestinal parasites was found significantly lower in the treatment groups as compared to T0. Weight gain was recorded significantly higher in the treatment groups. The hematological parameters like total leucocyte count (TLC, erythrocyte sedimentation rate (ESR, packed cell volume (PCV, hemoglobin (Hb and total erythrocyte count (TEC showed significant changes in the treatment groups. The study suggests that 10% water solution of garlic is a useful supplementation to decrease EPG count, body weight gain; thus, the 10% aqueous garlic solution can improve the general health condition of goat. [J Adv Vet Anim Res 2015; 2(3.000: 326-331

  13. Notes on the occurrence of Mortonagrion aborense Laidlaw, 1914 (Odonata: Coenagrionidae from lower West Bengal, India

    Directory of Open Access Journals (Sweden)

    Arajush Payra

    2016-07-01

    Full Text Available A new distribution record of an Odonata species from lower West Bengal. Mortonagrion aborense laidlaw, 1914 is recorded for the first time from Purba Medinipur district, lower West Bengal. Previously the species was recorded only from north-east India (Mizoram, West Bengal, Assam and Nagaland. Diagnostic characters with photographic details of male anal appendages are also given for easy identification of this rare damselfly species.

  14. Flyash as a post-harvest preservative for five commonly utilized pulses

    Energy Technology Data Exchange (ETDEWEB)

    Mendki, P.S.; Maheshwari, V.L.; Kothari, R.M.

    2001-07-01

    Flyash was evaluated for post-harvest preservation of five commonly used pulses; namely soyabean (Glycin max), bengal gram (Cicer arietinum), green gram (Vigna radiata), black gram (V. mungo) and red gram (V. unguiculata). All the pulses were deliberately infested with stored grain pest, (Callosobruchus chinensis) and treated with 1 gm flyash per 5 kg of pulses under ambient storage conditions for 18 months. No adult C. chinensis were found in pulses treated with flyash even after 12 months of treatment. After 18 months, bengal gram was the most infested, both in terms of number of insects observed and percent damaged grains, whereas soyabean and black gram were least infested. There was no effect of flyash on the nutritional quality and percent germination of pulses.

  15. Acetyl Coenzyme A Acetyltransferase of Rhizobium sp. (Cicer) Strain CC 1192.

    Science.gov (United States)

    Kim, S A; Copeland, L

    1997-09-01

    To investigate why Rhizobium sp. (Cicer) strain CC 1192 cells accumulate poly-R-3-hydroxybutyrate in the free-living state but not as bacteroids in nodules on chickpea (Cicer arietinum L.) plants, we have examined the kinetic properties of acetyl coenzyme A (acetyl-CoA) acetyltransferase (also known as acetoacetyl-CoA thiolase and 3-ketothiolase [EC 2.3.1.9]) from both types of cells. The enzyme had a native molecular mass of 180 (plusmn) 4 kDa, and the subunit molecular mass was 44 (plusmn) 1 kDa. The seven amino acids from the N terminus were Lys-Ala-Ser-Ile-Val-Ile-Ala. Thiolysis and condensation activity of the enzyme from free-living CC 1192 cells were optimal at pHs 7.8 and 8.1, respectively. The relationship between substrate concentrations and initial velocity for the thiolysis reaction were hyperbolic and gave K(infm) values for acetoacetyl-CoA and CoA of 42 and 56 (mu)M, respectively. The maximum velocity in the condensation direction was approximately 10% of that of the thiolysis reaction. With highly purified preparations of the enzyme, a value of approximately 1 mM was determined for the apparent K(infm) for acetyl-CoA. However, with partially purified enzyme preparations or when N-ethylmaleimide was included in reaction mixtures the apparent K(infm) for acetyl-CoA was close to 0.3 mM. In the condensation direction, CoA was a potent linear competitive inhibitor with an inhibition constant of 11 (mu)M. The much higher affinity of the enzyme for the product CoA than the substrate acetyl-CoA could have significance in view of metabolic differences between bacteroid and free-living cells of CC 1192. We propose that in free-living CC 1192 cells, the acetyl-CoA/CoA ratio reaches a value that allows condensation activity of acetyl-CoA acetyltransferase, but that in CC 1192 bacteroids, the ratio is poised so that the formation of acetoacetyl-CoA is not favored.

  16. Bioaugmentation of Mesorhizobium cicer, Pseudomonas spp. and Piriformospora indica for Sustainable Chickpea Production.

    Science.gov (United States)

    Mansotra, Pallavi; Sharma, Poonam; Sharma, Sunita

    2015-07-01

    Chickpea establishes symbiotic association with Mesorhizobium to fulfill its nitrogen (N) requirement. Integrating chickpea rhizosphere with potential native mesorhizobia and other plant growth promoting microorganisms can contribute multiple benefits to plants. The present investigation was undertaken to study interactions among Piriformospora indica (PI) with potential plant growth promoting rhizobacteria (PGPR) viz. Pseudomonas argentinensis (LPGPR1), Pseudomonas sp. (LPGPR2) along with national check Pseudomons sp. (LK884) and Mesorhizobium cicer (LGR33, MR) to examine the synergistic effect of consortium for improving growth, symbiotic efficiency, nutrient acquisition and yield in two chickpea (Cicer arietinum L.) varieties viz. desi PBG1 and kabuli BG1053. In-vitro, seed germination with consortium MR + PI + LPGPR1 was the best compatible treatment followed by MR + PI + LK884 and MR + PI + LPGPR2. Significant improvement in the growth, symbiotic parameters and grain yield was observed with MR + PI + LPGPR1 and MR + PI + LK884 treatments. Significantly high chlorophyll and leghaemoglobin content was recorded with MR + PI + LPGPR1 (1.57 and 1.64 mg g(-1) fresh weight of leaves and 5.19 and 4.39 mg/g(-1) fresh weight of nodules) in desi PBG1 and kabuli BG1053 chickpea varieties, respectively. At 90 DAS, MR + PI + LPGPR1 treatment significantly improved nodule dry weight (ranged between 84.0 and 141.7 mg plant(-1)) as compared to MR alone treatment (ranged between 62.3 and 123.3 mg plant(-1)). Data revealed significant increase in total nitrogen (N) and phosphorus (P) content of shoot with MR + PI + LPGPR1 by 1.2 and 1.5 fold, respectively over MR alone treatment. On the basis of overall mean, MR + PI + LPGPR1 significantly improved the yield by 8.2 % over Mesorhizobium alone application. It seems from foregoing study that tripartite combination of different micro-organisms can be

  17. Subsurface ammonium maxima in northern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Satyanarayana, D.; Sahu, S.D.; Panigrahy, P.K.; Sarma, V.V.; Suguna, C.

    of Oceanography, Regional Centre, 52, Kirlampudi Layout, Visakhapatnam 530 023, India (Received 13 February 1990; revised version received 25 October 1990; accepted 23 November 1990) ABSTRACT Chemical oceanographic data collected on RV Gaveshani cruises 181...-borne 'Autosal' with a precision of +_0.003 x 10 -3 RESULTS AND DISCUSSION Chemical oceanographic data collected in the Bay of Bengal during March-April, 1987 showed an interesting pattern of ammonium distri- bution. The water column is divided into three...

  18. The tectonic origin of the Bay of Bengal and Bangladesh

    Digital Repository Service at National Institute of Oceanography (India)

    Talwani, M.; Desa, M.; Ismaiel, M.; Krishna, K.S.

    reliable determination of the rate and direction of spreading in the Bay of Bengal ob- tained from seafloor spreading type magnetic anomalies. Together with the anomalies in the conjugate Enderby Basin (discussed later), they enable us to reconstruct... anomaly strip is at a boundary between continental and ocean- ic crusts.  5. Magnetic Anomalies in the Enderby Basin In order to obtain an Early Cretaceous reconstruction of the Eastern Indian Ocean from magnetic linea- tions, we need to examine...

  19. Local Sustainable Energy Assessment of Uttarakhand and West Bengal

    DEFF Research Database (Denmark)

    Andersen, Jan; Lund, Søren

    The publication reports a sustainable energy assessment at the local project site of the HighARCS project in Nainital, Uttarakhand and Buxa, West Bengal, India. The assessment has been made as a contribution to the elaboration of biodiversity conservation and livelihoods improvement action plans....... It proposes an energy assessment methodology and planning procedure. An assessment is made for each of the two local areas on the basis of data collected during a field visit in Sept 2010...

  20. Chickpea (Cicer arietinum) proteins induce allergic responses in nasobronchial allergic patients and BALB/c mice.

    Science.gov (United States)

    Verma, Alok Kumar; Kumar, Sandeep; Tripathi, Anurag; Chaudhari, Bhushan P; Das, Mukul; Dwivedi, Premendra D

    2012-04-05

    Allergy to chickpea or Garbanzo bean (Cicer arietinum) has been reported in the Indian population. Little information is found regarding allergenic events involved in the chickpea allergy; therefore, chickpea allergenicity assessment was undertaken. In vivo and ex vivo studies were carried out using BALB/c mice. Chickpea skin prick test positive patients have been used to extend this study in humans. Identification of allergens was carried out by simulated gastric fluids assay for pepsin resistant polypeptides and validated by IgE western blotting using chickpea sensitive humans and sensitized mice sera. Our data have shown the occurrence of a systemic anaphylactic reaction resulting in reduced body temperature after challenge along with significantly increased levels of IgE, IgG1, MMCP-1, CCL-2 as well as histamine. Further, increased Th1/Th2 (mixed) cytokine response was observed in spleen cell culture supernatants. Jejunum, lungs and spleen showed prominent histopathological changes specific for allergic inflammation. Immunoblotting with pooled sera of either sensitized mice or human sera recognized seven similar IgE binding polypeptides that may be responsible for chickpea induced hypersensitivity reactions. This study has addressed the allergenic manifestations associated with chickpea consumption and identifies the proteins responsible for allergenicity which may prove useful in diagnosis and management of allergenicity of legumes especially chickpea. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  1. A seedling specific vegetative lectin gene is related to development in Cicer arietinum.

    Science.gov (United States)

    Esteban, Rocío; Dopico, Berta; Muñoz, Francisco J; Romo, Silvia; Labrador, Emilia

    2002-04-01

    Plant lectins are a group of glycoproteins with the ability to recognize and bind carbohydrate ligands. Seed lectins function as storage and defense proteins, but the specific function of vegetative lectins is uncertain. In this paper we describe the characterization of a clone, CanVLEC, encoding a vegetative lectin from chickpea (Cicer arietinum L. cv. Castellana). The expression of the CanVLEC gene was specific in seedlings, mostly in hooks and elongating epicotyls, and no expression was detected in adult plants. The level of chickpea vegetative lectin transcripts in epicotyls decreased through the epicotyl growth suggesting a relationship to development. Treatment with indoleacetic acid (IAA) and brassinolides (BR), hormones that promoted elongation in chickpea epicotyl, increased the level of CanVLEC mRNA, supporting a relationship to growth. CanVLEC is drastically down regulated by water deficit ruling out its possible involvement in plant response to water stress, unlike other vegetative lectins. CanVLEC protein may be targeted to an extracellular location owing to the presence of a signal peptide.

  2. Marker-trait association study for protein content in chickpea (Cicer arietinum L.)

    Indian Academy of Sciences (India)

    A. A. Jadhav; S. J. Rayate; L. B. Mhase; M. Thudi; A. Chitikineni; P. N. Harer; A. S. Jadhav; R. K. Varshney; P. L. Kulwal

    2015-06-01

    Chickpea (Cicer arietinum L.) is the second most important cool season food legume cultivated in arid and semiarid regions of the world. The objective of the present study was to study variation for protein content in chickpea germplasm, and to find markers associated with it. A set of 187 genotypes comprising both international and exotic collections, and representing both desi and kabuli types with protein content ranging from 13.25% to 26.77% was used. Twenty-three SSR markers representing all eight linkage groups (LG) amplifying 153 loci were used for the analysis. Population structure analysis identified three subpopulations, and corresponding $Q$ values of principal components were used to take care of population structure in the analysis which was performed using general linear and mixed linear models. Marker-trait association (MTA) analysis identified nine significant associations representing four QTLs in the entire population. Subpopulation analyses identified ten significant MTAs representing five QTLs, four of which were common with that of the entire population. Two most significant QTLs linked with markers TR26.205 and CaM1068.195 were present on LG3 and LG5. Gene ontology search identified 29 candidate genes in the region of significant MTAs on LG3. The present study will be helpful in concentrating on LG3 and LG5 for identification of closely linked markers for protein content in chickpea and for their use in molecular breeding programme for nutritional quality improvement.

  3. The estrogenic activity of isoflavones extracted from chickpea Cicer arietinum L sprouts in vitro.

    Science.gov (United States)

    HaiRong, Ma; HuaBo, Wei; Zhen, Chen; Yi, Yang; ZhengHua, Wang; Madina, Habasi; Xu, Cao; Akber, Aisa Haji

    2013-08-01

    Isoflavones have drawn attention due to their potential therapeutic use. Isoflavones are the important chemical components of the seeds and sprouts of chickpea and higher isoflavones in sprouts than in seeds. However, there have been no previous reports of the estrogenic activity of isoflavones extracted from chickpea Cicer arietinum L sprouts (ICS) in vitro. In this study, which incorporated several in vitro bioassays methods, we systematically evaluated the estrogenic properties of ICS. MTT assay showed that ICS at the low concentration ranges (10(-3)-1 mg/L) promoted MCF-7 cell growth, while at high concentrations, (>1 mg/L) inhibited cell proliferation, indicating ICS worked at a diphasic mechanism. Flow cytometric analysis further calculated the proliferation rate of ICS at low concentration (1 mg/L). ERα/Luc trans-activation assay and then semi-quantitative RT-PCR analysis indicated that ICS at low concentrations induced ERα-mediated luciferase activity in MCF-7 cells and promoted the ER downstream target gene pS2 and PR trans-activation. These effects were inhibited by ICI 182,780, a special antagonist of ER, indicating that an ER-mediating pathway was involved. Alkaline phosphatase (AP) expression in Ishikawa cells showed that ICS at low concentrations stimulated AP expression. Our current study is the first to demonstrate that ICS has significant estrogenic activity in vitro. ICS may be useful as a supplement to hormone replacement therapy and in dietary supplements.

  4. Effect of sodium selenite on isoflavonoid contents and antioxidant capacity of chickpea (Cicer arietinum L.) sprouts.

    Science.gov (United States)

    Guardado-Félix, Daniela; Serna-Saldivar, Sergio O; Cuevas-Rodríguez, Edith O; Jacobo-Velázquez, Daniel A; Gutiérrez-Uribe, Janet A

    2017-07-01

    Isoflavonoid compositions, phenylalanine ammonia lyase (PAL) activity and antioxidant capacity were evaluated in chickpea (Cicer arietinum L.) sprouts germinated after soaking with different sodium selenite (Na2SeO3) concentrations (0, 1 and 2mg/100g seeds). Chickpea seeds were germinated during four days at 24°C and the isoflavonoid profiles and concentrations evaluated by HPLC-UV daily during four days of germination. Eleven isoflavones and two pterocarpan phytoalexins forms were identified in sprouts, being malonylated formononetin glycoside, formononetin, isoformononetin glycoside and malonylated biochanin A glycoside the major compounds. Compared to untreated sprouts, total isoflavonoid, PAL activity and antioxidant capacity showed a remarkable increase of 83%, 56%, and 33%, respectively in chickpea sprouts that were treated with a high sodium selenite content (2mg/100g seeds). Results suggest that Se-enriched chickpea sprouts could represent a good source of dietary Se and as an upgraded source of isoflavonoids. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. Phosphoproteomic dynamics of chickpea (Cicer arietinum L.) reveals shared and distinct components of dehydration response.

    Science.gov (United States)

    Subba, Pratigya; Barua, Pragya; Kumar, Rajiv; Datta, Asis; Soni, Kamlesh Kumar; Chakraborty, Subhra; Chakraborty, Niranjan

    2013-11-01

    Reversible protein phosphorylation is a ubiquitous regulatory mechanism that plays critical roles in transducing stress signals to bring about coordinated intracellular responses. To gain better understanding of dehydration response in plants, we have developed a differential phosphoproteome in a food legume, chickpea (Cicer arietinum L.). Three-week-old chickpea seedlings were subjected to progressive dehydration by withdrawing water, and the changes in the phosphorylation status of a large repertoire of proteins were monitored. The proteins were resolved by 2-DE and stained with phosphospecific fluorescent Pro-Q Diamond dye. Mass spectrometric analysis led to the identification of 91 putative phosphoproteins, presumably involved in a variety of functions including cell defense and rescue, photosynthesis and photorespiration, molecular chaperones, and ion transport, among others. Multiple sites of phosphorylation were predicted on several key elements, which include both the regulatory as well as the functional proteins. A critical survey of the phosphorylome revealed a DREPP (developmentally regulated plasma membrane protein) plasma membrane polypeptide family protein, henceforth designated CaDREPP1. The transcripts of CaDREPP1 were found to be differentially regulated under dehydration stress, further corroborating the proteomic results. This work provides new insights into the possible phosphorylation events triggered by the conditions of progressive water-deficit in plants.

  6. Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review.

    Science.gov (United States)

    Jukanti, A K; Gaur, P M; Gowda, C L L; Chibbar, R N

    2012-08-01

    Chickpea (Cicer arietinum L.) is an important pulse crop grown and consumed all over the world, especially in the Afro-Asian countries. It is a good source of carbohydrates and protein, and protein quality is considered to be better than other pulses. Chickpea has significant amounts of all the essential amino acids except sulphur-containing amino acids, which can be complemented by adding cereals to the daily diet. Starch is the major storage carbohydrate followed by dietary fibre, oligosaccharides and simple sugars such as glucose and sucrose. Although lipids are present in low amounts, chickpea is rich in nutritionally important unsaturated fatty acids such as linoleic and oleic acids. β-Sitosterol, campesterol and stigmasterol are important sterols present in chickpea oil. Ca, Mg, P and, especially, K are also present in chickpea seeds. Chickpea is a good source of important vitamins such as riboflavin, niacin, thiamin, folate and the vitamin A precursor β-carotene. As with other pulses, chickpea seeds also contain anti-nutritional factors which can be reduced or eliminated by different cooking techniques. Chickpea has several potential health benefits, and, in combination with other pulses and cereals, it could have beneficial effects on some of the important human diseases such as CVD, type 2 diabetes, digestive diseases and some cancers. Overall, chickpea is an important pulse crop with a diverse array of potential nutritional and health benefits.

  7. Crystallization and preliminary X-ray characterization of a lectin from Cicer arietinum (chickpea)

    Energy Technology Data Exchange (ETDEWEB)

    Katre, Uma V.; Gaikwad, S. M. [Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008 (India); Bhagyawant, S. S.; Deshpande, U. D. [School of Life Sciences, S. R. T. M. University, Nanded 431606 (India); Khan, M. I.; Suresh, C. G., E-mail: suresh@ems.ncl.res.in [Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008 (India)

    2005-01-01

    The crystallization and characterization of a lectin isolated and purified from C. arietinum and possessing complex sugar specificity is reported. The lectin isolated from mature seeds of Cicer arietinum (CAL) agglutinates pronase-treated rabbit and human erythrocytes and its haemagglutination activity is inhibited by fetuin and desialated fetuin but not by simple monosaccharides or oligosaccharides. The purified lectin is a dimer of molecular weight 43 000 Da composed of two identical subunits (MW 21 500), as confirmed by SDS–PAGE. The lectin has been crystallized using the hanging-drop vapour-diffusion method at 295 K over a well solution containing 0.2 M sodium acetate, 0.1 M sodium phosphate buffer pH 6.5 and 14%(w/v) polyethylene glycol 8000. The triangular prism-shaped crystals belong to space group R3 and have unit-cell parameters a = b = 81.2, c = 69.4 Å. The diffraction data are 93.8% complete to 2.3 Å Bragg spacing with an R{sub merge} of 0.103.

  8. Marker-trait association study for protein content in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Jadhav, A A; Rayate, S J; Mhase, L B; Thudi, M; Chitikineni, A; Harer, P N; Jadhav, A S; Varshney, R K; Kulwal, P L

    2015-06-01

    Chickpea (Cicer arietinum L.) is the second most important cool season food legume cultivated in arid and semiarid regions of the world. The objective of the present study was to study variation for protein content in chickpea germplasm, and to find markers associated with it. A set of 187 genotypes comprising both international and exotic collections, and representing both desi and kabuli types with protein content ranging from 13.25% to 26.77% was used. Twenty-three SSR markers representing all eight linkage groups (LG) amplifying 153 loci were used for the analysis. Population structure analysis identified three subpopulations, and corresponding Q values of principal components were used to take care of population structure in the analysis which was performed using general linear and mixed linear models. Marker-trait association (MTA) analysis identified nine significant associations representing four QTLs in the entire population. Subpopulation analyses identified ten significant MTAs representing five QTLs, four of which were common with that of the entire population. Two most significant QTLs linked with markers TR26.205 and CaM1068.195 were present on LG3 and LG5. Gene ontology search identified 29 candidate genes in the region of significant MTAs on LG3. The present study will be helpful in concentrating on LG3 and LG5 for identification of closely linked markers for protein content in chickpea and for their use in molecular breeding programme for nutritional quality improvement.

  9. A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Jain, Mukesh; Misra, Gopal; Patel, Ravi K; Priya, Pushp; Jhanwar, Shalu; Khan, Aamir W; Shah, Niraj; Singh, Vikas K; Garg, Rohini; Jeena, Ganga; Yadav, Manju; Kant, Chandra; Sharma, Priyanka; Yadav, Gitanjali; Bhatia, Sabhyata; Tyagi, Akhilesh K; Chattopadhyay, Debasis

    2013-06-01

    Cicer arietinum L. (chickpea) is the third most important food legume crop. We have generated the draft sequence of a desi-type chickpea genome using next-generation sequencing platforms, bacterial artificial chromosome end sequences and a genetic map. The 520-Mb assembly covers 70% of the predicted 740-Mb genome length, and more than 80% of the gene space. Genome analysis predicts the presence of 27,571 genes and 210 Mb as repeat elements. The gene expression analysis performed using 274 million RNA-Seq reads identified several tissue-specific and stress-responsive genes. Although segmental duplicated blocks are observed, the chickpea genome does not exhibit any indication of recent whole-genome duplication. Nucleotide diversity analysis provides an assessment of a narrow genetic base within the chickpea cultivars. We have developed a resource for genetic markers by comparing the genome sequences of one wild and three cultivated chickpea genotypes. The draft genome sequence is expected to facilitate genetic enhancement and breeding to develop improved chickpea varieties. © 2013 The Authors The Plant Journal © 2013 John Wiley & Sons Ltd.

  10. Genetic diversity and association mapping of iron and zinc concentrations in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Diapari, Marwan; Sindhu, Anoop; Bett, Kirstin; Deokar, Amit; Warkentin, Thomas D; Tar'an, Bunyamin

    2014-08-01

    Chickpea (Cicer arietinum L.) is the world's second most important pulse crop after common bean. Chickpea has historically been an important daily staple in the diet of millions of people, especially in the developing countries. Current chickpea breeding programs have mainly been directed toward high yield, biotic and abiotic stress resilience that has increased global production, but less attention has been directed toward improving micronutrient concentrations in seeds. In an effort to develop micronutrient-dense chickpea lines, a study to examine the variability and to identify SNP alleles associated with seed iron and zinc concentrations was conducted using 94 diverse accessions of chickpea. The results indicated that there is substantial variability present in chickpea germplasm for seed iron and zinc concentrations. In the current set of germplasm, zinc is negatively correlated with grain yield across all locations and years; whereas the negative correlation between iron and grain yield was only significant at the Elrose locality. Eight SNP loci associated with iron and (or) zinc concentrations in chickpea seeds were identified. One SNP located on chromosome 1 (chr1) is associated with both iron and zinc concentrations. On chr4, three SNPs associated with zinc concentration and two SNPs for iron concentration were identified. Two additional SNP loci, one on chr6 and the other on chr7, were also found to be associated with iron and zinc concentrations, respectively. The results show potential opportunity for molecular breeding for improvement of seed iron and zinc concentrations in chickpea.

  11. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Parween, Sabiha; Nawaz, Kashif; Roy, Riti; Pole, Anil K; Venkata Suresh, B; Misra, Gopal; Jain, Mukesh; Yadav, Gitanjali; Parida, Swarup K; Tyagi, Akhilesh K; Bhatia, Sabhyata; Chattopadhyay, Debasis

    2015-08-11

    Chickpea (Cicer arietinum L.) is an important pulse legume crop. We previously reported a draft genome assembly of the desi chickpea cultivar ICC 4958. Here we report an advanced version of the ICC 4958 genome assembly (version 2.0) generated using additional sequence data and an improved genetic map. This resulted in 2.7-fold increase in the length of the pseudomolecules and substantial reduction of sequence gaps. The genome assembly covered more than 94% of the estimated gene space and predicted the presence of 30,257 protein-coding genes including 2230 and 133 genes encoding potential transcription factors (TF) and resistance gene homologs, respectively. Gene expression analysis identified several TF and chickpea-specific genes with tissue-specific expression and displayed functional diversification of the paralogous genes. Pairwise comparison of pseudomolecules in the desi (ICC 4958) and the earlier reported kabuli (CDC Frontier) chickpea assemblies showed an extensive local collinearity with incongruity in the placement of large sequence blocks along the linkage groups, apparently due to use of different genetic maps. Single nucleotide polymorphism (SNP)-based mining of intra-specific polymorphism identified more than four thousand SNPs differentiating a desi group and a kabuli group of chickpea genotypes.

  12. Impact of five insecticides on chickpea (Cicer arietinum L. nodulation, yield and nitrogen fixing rhizospheric bacteria

    Directory of Open Access Journals (Sweden)

    H. Khan

    2009-05-01

    Full Text Available A field experiment was conducted to study the effect of five insecticides i.e. Lorsban (40% EC, Decis (25% EC, Pyrifos (40% EC, Karate (25% EC, and Ripcord (10% EC on the survival of rhizosphere N2-fixing microorganisms, nodulation, pod damage (by pod borer, and grain yield of chickpea (Cicer arietinum L. crop. The study revealed that Pyrifos suppressed nodulation in chickpea and specific rhizobial counts in the crop rhizosphere, indicating that this insecticide was harmful to rhizobial population in rhizosphere. All the other tested insecticides were safe as they did not affect nodulation of the crop and the specific rhizobial counts in the rhizosphere. The results also revealed that all the tested insecticides except Lorsban (40% EC suppressed Azotobacter population in the rhizospheric soil indicating that Lorsban was harmless to Azotobacter while all other tested insecticides were harmful to the survival of this important nitrogen fixing bacterium. Pyrifos proved to be the most effective insecticide in controlling the pod borer damage and also in increasing the grain yield significantly as compared to other tested insecticides.

  13. Transformation of gram positive bacteria by sonoporation

    Science.gov (United States)

    Yang, Yunfeng; Li, Yongchao

    2014-03-11

    The present invention provides a sonoporation-based method that can be universally applied for delivery of compounds into Gram positive bacteria. Gram positive bacteria which can be transformed by sonoporation include, for example, Bacillus, Streptococcus, Acetobacterium, and Clostridium. Compounds which can be delivered into Gram positive bacteria via sonoporation include nucleic acids (DNA or RNA), proteins, lipids, carbohydrates, viruses, small organic and inorganic molecules, and nano-particles.

  14. INFORME DE UNA MUTACIÓN EN LA COLECCIÓN CUBANA DE GARBANZO (Cicer arietinum L.)

    OpenAIRE

    T. Shagarodski

    2004-01-01

    Se describe una mutación en el cultivo del garbanzo (Cicer arietinum L.) a partir del cultivar Nacional-5HA, la cual no ha sido observada con anterioridad en la colección cubana del cultivo. El mutante se caracteriza por presentar una hoja multipinnada respecto a la hoja normal del garbanzo (imparipinnada) y muestra un ciclo a cosecha de 72 días. La característica foliar descrita en el mutante tiene un alto valor discriminante en la caracterización varietal y contribuye a ampliar la variabili...

  15. Future trends in urbanization and coastal water pollution in the Bay of Bengal: the lived experience

    NARCIS (Netherlands)

    Zinia, N.J.; Kroeze, C.

    2015-01-01

    The Bay of Bengal includes coastal seas of several countries, including Bangladesh, India, and Myanmar. We present scenarios for future river export of eutrophying nutrients into the Bay of Bengal, and the role of urbanization therein. We used NEWS (Nutrient Export from WaterSheds) model to analyze

  16. Seasonal variability of cyclone heat potential in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sadhuram, Y.; Rao, B.P.; Rao, D.P.; Shastri, P.N.M.; Subrahmanyam, M.V.

    Monthly maps of cyclone heat potential (CHP) in the Bay of Bengal have been prepared by using Levitus climatological data set. Seasonal variability of CHP in the Bay of Bengal has been studied using the CTD data sets collected during five cruises...

  17. A comparative study of vertical stabilities in the Arabian sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sastry, J.S.; Rao, D.P.

    Stabilities in the upper 300 m in the Arabian Sea and the Bay of Bengal are computed and presented seasonwise. The water column in the Bay of Bengal is more strongly stratified than that in the Arabian Sea. These studies suggest that the vertical...

  18. Complete genome sequence of two genotype III Japanese encephalitis virus isolates from West Bengal, India

    Directory of Open Access Journals (Sweden)

    Debjani Taraphdar

    2015-01-01

    Interpretation & conclusions: This study reports on complete gene based phylogenetic analysis of JEV isolates from the State of West Bengal. It was evident from the results that JEV was still under circulation in both vaccine covered and not covered districts of West Bengal.

  19. Wind stress, curl and vertical velocity in the Bay of Bengal during southwest monsoon, 1984

    Digital Repository Service at National Institute of Oceanography (India)

    Babu, M.T.; Heblekar, A.K.; Murty, C.S.

    Wind distribution observed during southwest monsoon of 1984 has used to derive the mean wind stress for the season at every 1 degree square grid and curl over the Bay of Bengal. Two regions of maximum wind stress are present over the Bay of Bengal...

  20. Enhanced particle fluxes in Bay of Bengal inducEd. by injection of freshwater

    Digital Repository Service at National Institute of Oceanography (India)

    Ittekkot, V.; Nair, R.R.; Honjo, S.; Ramaswamy, V.; Bartsch, M.; Manganini, S.J.; Desai, B.N.

    deployed three sediment-trap moorings (two traps in each mooring) in the northern, central and southern parts of the Bay of Bengal, respectively. The Bay of Bengal is suitable for such a study, because some of the world's largest rivers supply pulses...

  1. Anatomía Vascular de Plántulas de Cicer Arietinum: Genotipo M x WR-315-14 (Fabaceae Vascular anatomy of seedlings of Cicer aretinum M x WR-315-14 genotype (Fabaceae

    Directory of Open Access Journals (Sweden)

    N. S. Ateca

    2009-07-01

    Full Text Available Se estudiaron los caracteres anatómicos de la vascularización de plántulas de Cicer arietinum L. (Fabaceae, Faboideae, Cicereae pertenecientes al genotipo M x WR-315-14. La anatomía vascular de la raíz, hipocótilo, nudo cotiledonar, epicótilo, segundo y tercer entrenudo de plántulas normales con el protofilo desplegado, fueron analizados para determinar la localización y detalles sobre las variaciones en el desarrollo de los elementos conductores. Estos datos serán de interés para la identificación en estados juveniles de genotipos de la especie.We studied the vascular anatomy in seedlings of Cicer aretinum L. M x WR-315-14 genotype (Fabaceae, Faboideae, Cicereae, with the aim of determining the localization and development of conducting elements. We analyzed the vascular anatomy of roots, hypocotyls, cotyledonal nudes, epicotyls, second and third internodes of standard seedlings with unfolded protophylls. These data will contribute to the identification of different genotypes of the species in juvenile stages.

  2. Biogeochemistry of the Bay of Bengal: Physical, chemical and primary productivity characteristics of the central and western Bay of Bengal during summer monsoon 2001

    Digital Repository Service at National Institute of Oceanography (India)

    Madhupratap, M.; Gauns, M.; Ramaiah, N.; PrasannaKumar, S.; Muraleedharan, P.M.; DeSousa, S.N.; Sardessai, S.; Muraleedharan, U.D.

    Reliable data on biological characteristics from the Bay of Bengal are elusive. In this paper, we present results on physics, chemistry and biology simultaneously measured during the summer monsoon, 2001 from open ocean and coastal areas...

  3. n-Gram-Based Text Compression

    Directory of Open Access Journals (Sweden)

    Vu H. Nguyen

    2016-01-01

    Full Text Available We propose an efficient method for compressing Vietnamese text using n-gram dictionaries. It has a significant compression ratio in comparison with those of state-of-the-art methods on the same dataset. Given a text, first, the proposed method splits it into n-grams and then encodes them based on n-gram dictionaries. In the encoding phase, we use a sliding window with a size that ranges from bigram to five grams to obtain the best encoding stream. Each n-gram is encoded by two to four bytes accordingly based on its corresponding n-gram dictionary. We collected 2.5 GB text corpus from some Vietnamese news agencies to build n-gram dictionaries from unigram to five grams and achieve dictionaries with a size of 12 GB in total. In order to evaluate our method, we collected a testing set of 10 different text files with different sizes. The experimental results indicate that our method achieves compression ratio around 90% and outperforms state-of-the-art methods.

  4. n-Gram-Based Text Compression

    Science.gov (United States)

    Duong, Hieu N.; Snasel, Vaclav

    2016-01-01

    We propose an efficient method for compressing Vietnamese text using n-gram dictionaries. It has a significant compression ratio in comparison with those of state-of-the-art methods on the same dataset. Given a text, first, the proposed method splits it into n-grams and then encodes them based on n-gram dictionaries. In the encoding phase, we use a sliding window with a size that ranges from bigram to five grams to obtain the best encoding stream. Each n-gram is encoded by two to four bytes accordingly based on its corresponding n-gram dictionary. We collected 2.5 GB text corpus from some Vietnamese news agencies to build n-gram dictionaries from unigram to five grams and achieve dictionaries with a size of 12 GB in total. In order to evaluate our method, we collected a testing set of 10 different text files with different sizes. The experimental results indicate that our method achieves compression ratio around 90% and outperforms state-of-the-art methods. PMID:27965708

  5. Methods for distinguishing gram-positive from gram-negative bacteria.

    OpenAIRE

    Carlone, G M; Valadez, M J; Pickett, M J

    1982-01-01

    Lysis by KOH and hydrolysis of L-alanine-4-nitroanilide were compared with the Gram reaction of aerobic, microaerophilic, and anaerobic bacteria. Both tests correlated well with the Gram reaction with nonfermentative bacilli and Bacillus species, whereas they did not correlate with nonsporulating anaerobes. Only campylobacteria were KOH positive and L-alanine-4-nitroanilide and gram negative.

  6. Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement.

    Science.gov (United States)

    Gupta, Sonal; Nawaz, Kashif; Parween, Sabiha; Roy, Riti; Sahu, Kamlesh; Kumar Pole, Anil; Khandal, Hitaishi; Srivastava, Rishi; Kumar Parida, Swarup; Chattopadhyay, Debasis

    2017-02-01

    Cicer reticulatum L. is the wild progenitor of the fourth most important legume crop chickpea (C. arietinum L.). We assembled short-read sequences into 416 Mb draft genome of C. reticulatum and anchored 78% (327 Mb) of this assembly to eight linkage groups. Genome annotation predicted 25,680 protein-coding genes covering more than 90% of predicted gene space. The genome assembly shared a substantial synteny and conservation of gene orders with the genome of the model legume Medicago truncatula. Resistance gene homologs of wild and domesticated chickpeas showed high sequence homology and conserved synteny. Comparison of gene sequences and nucleotide diversity using 66 wild and domesticated chickpea accessions suggested that the desi type chickpea was genetically closer to the wild species than the kabuli type. Comparative analyses predicted gene flow between the wild and the cultivated species during domestication. Molecular diversity and population genetic structure determination using 15,096 genome-wide single nucleotide polymorphisms revealed an admixed domestication pattern among cultivated (desi and kabuli) and wild chickpea accessions belonging to three population groups reflecting significant influence of parentage or geographical origin for their cultivar-specific population classification. The assembly and the polymorphic sequence resources presented here would facilitate the study of chickpea domestication and targeted use of wild Cicer germplasms for agronomic trait improvement in chickpea. © The Author 2016. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

  7. Efficacy of Vermicompost against fertilizers on Cicer and Pisum and on population diversity of N2 fixing bacteria.

    Science.gov (United States)

    Sinha, Jayanta; Biswas, Chanchal Kumar; Ghosh, Arup; Saha, Amit

    2010-05-01

    Vermicompost is a very important biofertilizer produced through the artificial cultivation of worms i.e. Vermiculture. Vermicompost is enriched with all beneficial soil bacteria and also contain many of the essential plant nutrients like N, P, K and micronutrients. It increases soil aeration, texture and jilt. In this work, study is being carried out to find out the effect of different fertilizers such as DAF, FYM and Vermicompost on various morphological parameters and on the in vitro growth of bacterial colonies and its diversity in relation to two important leguminous plants such as Pisum sp. and Cicer sp. Results showed that plant grown in Vermicompost pretreated soil exhibited maximum increase in all morphological parameters such as root length, shoot length, number of root branches, number of stem branches, number of leaves, number of flowers, number of pods and number of root nodules in four months sampling in comparison to untreated, FYM treated and DAP treated soils. Further in Vermicompost pretreated soil, number of N2 fixing bacterial colony was maximum and showed highest diversity indices (1.6 and 0.99 and 2.0 and 0.99 for Cicer sp. and Pisum sp. respectively) than FYM, DAP and untreated control. Thus not only does the Vermicompost stimulate plant growth but also it increases the N2 fixing bacterial population in soil and also its diversity.

  8. Verecundia, risa y decoro: Cicerón y el arte de insultar

    Directory of Open Access Journals (Sweden)

    Mas, Salvador

    2015-12-01

    Full Text Available One can speak about laughter in many ways; one can take, for example, a physiological approach, or a psychological one, or even a third sociological one, which the ancients did not completely disregard. Cicero, however, preferred to focus on the rhetorical possibilities of laughter and humor. The relevance of jest and jokes in order to get an audience’s favor or to ridicule an adversary is undeniable; but, despite their effectiveness and given their effectiveness, that jest and jokes can also exceed the limits of what is acceptable or advisable is also undeniable. An issue that is all the more serious since the orator can and should make joke of matters which, taken in themselves, are not funny. Cicero's rhetoric on laughter raises the issue of, and flows into, the ethics and the tactics that are attentive to the study and possible codification of the guiding principles in using such a powerful resource as humor. It is a resource that should be used in an advisable, appropriate, and dignified manner (for all these manners can be translated the Greek prepon and the latin decorum, which presupposes that it is not always so used, and, with respect to this at the following pages, presupposes that there is laughter that inappropriate, that is almost shameful, and that can result in difficulties for whoever causes the laughter and uses that humor, since it is always dangerous to laugh at the powerful. Undoubtedly, Cicero was an individual who very much insulted others, with wit, humor, and sometimes with extraordinary aggressiveness.Sobre la risa puede hablarse de muchas maneras; cabe, por ejemplo, una aproximación fisiológica, otra psicológica o una tercera sociológica, que los antiguos no desatendieron por completo, si bien Cicerón prefirió investigar sus posibilidades retóricas. A nadie se le oculta la relevancia de chanzas y chistes para disponer a la audiencia de manera favorable o para ridiculizar al adversario; tampoco que esta

  9. Evaluación de cultivares de garbanzo (cicer arietinum l. en Cuba

    Directory of Open Access Journals (Sweden)

    Tom\\u00E1s Shagarodsky

    2001-01-01

    Full Text Available El garbanzo Cicer arietinum L. constituye una leguminosa ampliamente apreciada por la población cubana. En los últimos 10 años se han introducido en cultivares de garbanzo adaptados a las condiciones de suelo y clima del país. Sin embargo, la base genética actual no es muy amplia y resulta necesario continuar evaluando nuevas variedades para dar respuesta a las limitantes bióticas y abióticas del cultivo. Se realizó un estudio del comportamiento de 19 variedades y líneas de garbanzo en las condiciones de Cuba. Variables evaluadas: altura de planta, número de ramas primarias; número de vainas por planta, peso de 100 semillas, rendimiento por planta, rendimiento/área, porcentaje de incidencia de Heliothis virescens, porcentaje de proteína en la semilla y número de vainas vanas por planta. Se realizó un análisis de componentes principales partiendo de una matriz de datos estandarizada. Los tres primeras componentes permitieron describir el 64,3% de la variación total y las variables que más contribuyeron a la descripción fueron: rendimiento por área, rendimiento por planta, porcentaje de incidencia de Heliothis. Las variedades de mayor rendimiento se distribuyeron en dos grupos: uno caracterizado por el contenido de proteína inferior al 20% representado por el cultivar Nacional-5HA (con un rendimiento de 2190 kg/ha; y el otro grupo con un contenido de proteína superior al 20% representado por el cultivar Nacional-29 (con 2357,14 kg/ha

  10. Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Panday, Digvijay; Schumann, Peter; Das, Subrata K

    2011-11-01

    A novel bacterial strain, designated NRCPB10(T), was isolated from rhizosphere soil of chickpea (Cicer arietinum L.) in Pusa, New Delhi, India. The 16S rRNA gene sequence of strain NRCPB10(T) showed highest similarity (98.9 %) to that of Rhizobium radiobacter NCPPB 2437(T), followed by Rhizobium larrymoorei AF3-10(T) (97.7 %) and Rhizobium rubi IFO 13261(T) (97.4 %). Phylogenetic analysis of strain NRCPB10(T) based on the housekeeping genes recA and atpD confirmed its position as distinct from recognized Rhizobium species. Levels of DNA-DNA relatedness between strain NRCPB10(T) and R. radiobacter ICMP 5785(T), R. larrymoorei LMG 21410(T) and R. rubi ICMP 6428(T) were 51.0, 32.6 and 27.3 %, respectively. Cellular fatty acids of strain NRCPB10(T) were C(18 : 1)ω7c (58.9 %), C(16 : 0) (15.5 %), C(19 : 0) cyclo ω8c (11.5 %), iso-C(16 : 1) (5.8 %), C(16 : 0) 3-OH (4.5 %), C(16 : 1)ω7c (2.1 %) and C(18 : 0) (1.3 %). The G+C content of the genomic DNA of strain NRCPB10(T) was 59.0 mol%. Strain NRCPB10(T) did not nodulate chickpea plants or induce tumours in tobacco plants. Phenotypic and physiological properties along with SDS-PAGE of whole-cell soluble proteins differentiated strain NRCPB10(T) from its closest phylogenetic neighbours. On the basis of data from the present polyphasic taxonomic study, strain NRCPB10(T) is considered to represent a novel species of the genus Rhizobium, for which the name Rhizobium pusense sp. nov. is proposed. The type strain is NRCPB10(T) ( = LMG 25623(T) = JCM 16209(T) = NCIMB 14639(T)).

  11. Aluminum stress inhibits root growth and alters physiological and metabolic responses in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Choudhury, Shuvasish; Sharma, Parul

    2014-12-01

    Chickpea (Cicer arietinum L.) roots were treated with aluminum (Al3+) in calcium chloride (CaCl2) solution (pH 4.7) and growth responses along with physiological and metabolic changes were investigated. Al3+ treatment for 7d resulted in a dose dependent decline of seed germination and inhibition of root growth. A significant (p ≤ 0.05) decline in fresh and dry biomass were observed after 7d of Al3+ stress.The root growth (length) was inhibited after 24 and 48 h of stress imposition. The hydrogen peroxide (H2O2) levels increased significantly (p ≤ 0.05) with respect to control in Al3+ treated roots. The hematoxylin and Evans blue assay indicated significant (p ≤ 0.05) accumulation of Al3+ in the roots and loss of plasma membrane integrity respectively. The time-course evaluation of lipid peroxidation showed increase in malondialdehyde (MDA) after 12, 24 and 48 h of stress imposition. Al3+ treatment did not alter the MDA levels after 2 or 4 h of stress, however, a minor increase was observed after 6 and 10 h of treatment. The proton (1H) nuclear magnetic resonance (NMR) spectrum of the perchloric acid extracts showed variation in the abundance of metabolites and suggested a major metabolic shift in chickpea root during Al3+ stress. The key differences that were observed include changes in energy metabolites. Accumulation of phenolic compounds suggested its possible role in Al3+ exclusion in roots during stress. The results suggested that Al3+ alters growth pattern in chickpea and induces reactive oxygen species (ROS) production that causes physiological and metabolic changes.

  12. Cold stress alters transcription in meiotic anthers of cold tolerant chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Sharma, Kamal Dev; Nayyar, Harsh

    2014-10-11

    Cold stress at reproductive phase in susceptible chickpea (Cicer arietinum L.) leads to pollen sterility induced flower abortion. The tolerant genotypes, on the other hand, produce viable pollen and set seed under cold stress. Genomic information on pollen development in cold-tolerant chickpea under cold stress is currently unavailable. DDRT-PCR analysis was carried out to identify anther genes involved in cold tolerance in chickpea genotype ICC16349 (cold-tolerant). A total of 9205 EST bands were analyzed. Cold stress altered expression of 127 ESTs (90 up-regulated, 37 down-regulated) in anthers, more than two third (92) of which were novel with unknown protein identity and function. Remaining about one third (35) belonged to several functional categories such as pollen development, signal transduction, ion transport, transcription, carbohydrate metabolism, translation, energy and cell division. The categories with more number of transcripts were carbohydrate/triacylglycerol metabolism, signal transduction, pollen development and transport. All but two transcripts in these categories were up-regulated under cold stress. To identify time of regulation after stress and organ specificity, expression levels of 25 differentially regulated transcripts were also studied in anthers at six time points and in four organs (anthers, gynoecium, leaves and roots) at four time points. Limited number of genes were involved in regulating cold tolerance in chickpea anthers. Moreover, the cold tolerance was manifested by up-regulation of majority of the differentially expressed transcripts. The anthers appeared to employ dual cold tolerance mechanism based on their protection from cold by enhancing triacylglycerol and carbohydrate metabolism; and maintenance of normal pollen development by regulating pollen development genes. Functional characterization of about two third of the novel genes is needed to have precise understanding of the cold tolerance mechanisms in chickpea anthers.

  13. Approaches for enhancement of N₂ fixation efficiency of chickpea (Cicer arietinum L.) under limiting nitrogen conditions.

    Science.gov (United States)

    Esfahani, Maryam Nasr; Sulieman, Saad; Schulze, Joachim; Yamaguchi-Shinozaki, Kazuko; Shinozaki, Kazuo; Tran, Lam-Son

    2014-04-01

    Chickpea (Cicer arietinum) is an important pulse crop in many countries in the world. The symbioses between chickpea and Mesorhizobia, which fix N₂ inside the root nodules, are of particular importance for chickpea's productivity. With the aim of enhancing symbiotic efficiency in chickpea, we compared the symbiotic efficiency of C-15, Ch-191 and CP-36 strains of Mesorhizobium ciceri in association with the local elite chickpea cultivar 'Bivanij' as well as studied the mechanism underlying the improvement of N₂ fixation efficiency. Our data revealed that C-15 strain manifested the most efficient N₂ fixation in comparison with Ch-191 or CP-36. This finding was supported by higher plant productivity and expression levels of the nifHDK genes in C-15 nodules. Nodule specific activity was significantly higher in C-15 combination, partially as a result of higher electron allocation to N₂ versus H⁺. Interestingly, a striking difference in nodule carbon and nitrogen composition was observed. Sucrose cleavage enzymes displayed comparatively lower activity in nodules established by either Ch-191 or CP-36. Organic acid formation, particularly that of malate, was remarkably higher in nodules induced by C-15 strain. As a result, the best symbiotic efficiency observed with C-15-induced nodules was reflected in a higher concentration of the total and several major amino metabolites, namely asparagine, glutamine, glutamate and aspartate. Collectively, our findings demonstrated that the improved efficiency in chickpea symbiotic system, established with C-15, was associated with the enhanced capacity of organic acid formation and the activities of the key enzymes connected to the nodule carbon and nitrogen metabolism. © 2013 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

  14. A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L

    Directory of Open Access Journals (Sweden)

    Abbo Shahal

    2010-09-01

    Full Text Available Abstract Background Chickpea (Cicer arietinum L. is the third most important pulse crop worldwide. Despite its importance, relatively little is known about its genome. The availability of a genome-wide physical map allows rapid fine mapping of QTL, development of high-density genome maps, and sequencing of the entire genome. However, no such a physical map has been developed in chickpea. Results We present a genome-wide, BAC/BIBAC-based physical map of chickpea developed by fingerprint analysis. Four chickpea BAC and BIBAC libraries, two of which were constructed in this study, were used. A total of 67,584 clones were fingerprinted, and 64,211 (~11.7 × of the fingerprints validated and used in the physical map assembly. The physical map consists of 1,945 BAC/BIBAC contigs, with each containing an average of 28.3 clones and having an average physical length of 559 kb. The contigs collectively span approximately 1,088 Mb. By using the physical map, we identified the BAC/BIBAC contigs containing or closely linked to QTL4.1 for resistance to Didymella rabiei (RDR and QTL8 for days to first flower (DTF, thus further verifying the physical map and confirming its utility in fine mapping and cloning of QTL. Conclusion The physical map represents the first genome-wide, BAC/BIBAC-based physical map of chickpea. This map, along with other genomic resources previously developed in the species and the genome sequences of related species (soybean, Medicago and Lotus, will provide a foundation necessary for many areas of advanced genomics research in chickpea and other legume species. The inclusion of transformation-ready BIBACs in the map greatly facilitates its utility in functional analysis of the legume genomes.

  15. A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L.

    Science.gov (United States)

    Zhang, Xiaojun; Scheuring, Chantel F; Zhang, Meiping; Dong, Jennifer J; Zhang, Yang; Huang, James J; Lee, Mi-Kyung; Abbo, Shahal; Sherman, Amir; Shtienberg, Dani; Chen, Weidong; Muehlbauer, Fred; Zhang, Hong-Bin

    2010-09-17

    Chickpea (Cicer arietinum L.) is the third most important pulse crop worldwide. Despite its importance, relatively little is known about its genome. The availability of a genome-wide physical map allows rapid fine mapping of QTL, development of high-density genome maps, and sequencing of the entire genome. However, no such a physical map has been developed in chickpea. We present a genome-wide, BAC/BIBAC-based physical map of chickpea developed by fingerprint analysis. Four chickpea BAC and BIBAC libraries, two of which were constructed in this study, were used. A total of 67,584 clones were fingerprinted, and 64,211 (~11.7 x) of the fingerprints validated and used in the physical map assembly. The physical map consists of 1,945 BAC/BIBAC contigs, with each containing an average of 28.3 clones and having an average physical length of 559 kb. The contigs collectively span approximately 1,088 Mb. By using the physical map, we identified the BAC/BIBAC contigs containing or closely linked to QTL4.1 for resistance to Didymella rabiei (RDR) and QTL8 for days to first flower (DTF), thus further verifying the physical map and confirming its utility in fine mapping and cloning of QTL. The physical map represents the first genome-wide, BAC/BIBAC-based physical map of chickpea. This map, along with other genomic resources previously developed in the species and the genome sequences of related species (soybean, Medicago and Lotus), will provide a foundation necessary for many areas of advanced genomics research in chickpea and other legume species. The inclusion of transformation-ready BIBACs in the map greatly facilitates its utility in functional analysis of the legume genomes.

  16. Upper Ocean Stratification in the Bay of Bengal

    Science.gov (United States)

    2014-09-20

    are too cold and mixed layer depths that are too deep. The biases are large and likely reduce the intensity of air-sea interaction by overestimating...the thermal inertia of the upper ocean and thus the time scale on which the ocean can respond to the atmosphere. A likely reason for this bias is an...help refine their shipboard procedures. Eric D’Asaro was also a teacher at the ASIRI-OMM summer workshop on Upper Ocean Physics in the Bay of Bengal

  17. Hydroclimatic mechanisms of cholera transmission in the Bengal Delta

    Science.gov (United States)

    Tretkoff, Ernie

    2011-07-01

    Cholera, a deadly waterborne disease, remains a major threat in many areas of the world, including the Bengal Delta region. In this region, cholera outbreaks have two annual peaks; the first occurs during the dry season in the spring, and the second occurs in the fall following the wet season. However, the large-scale hydroclimatic processes underlying the propagation of the disease have not been well understood. Akanda et al. show that cholera outbreaks in the Bengal Delta region propagate from the coast to inland and from spring to fall following two distinct transmission cycles. The first outbreak begins in the spring near the coast when northward movement of plankton-rich seawater and increasing salinity promote the growth of cholera-causing bacteria in rivers, which are used for irrigation, sanitation, and consumption. The second outbreak begins in the fall, after summer floods and monsoons affect sanitation conditions that aid in bacterial transmission by contaminating waters over much of Bangladesh. (Water Resources Research, doi:10.1029/ 2010WR009914, 2011)

  18. Veillonella, Firmicutes: Microbes disguised as Gram negatives

    DEFF Research Database (Denmark)

    Vesth, Tammi Camilla; Ozen, Asli; Andersen, Sandra Christine

    2013-01-01

    to 20 other Firmicutes genomes; a further 101 prokaryotic genomes were included, covering 26 phyla. Thus a total of 145 prokaryotic genomes were analyzed by various methods to investigate the apparent conflict of the Veillonella Gram stain and their taxonomic position within the Firmicutes. Comparison......,350 shared proteins, although less than half of these are found in any given Clostridium genome. Only 27 proteins are found conserved in all analyzed prokaryote genomes. Veillonella has distinct metabolic properties, and significant similarities to genomes of Proteobacteria are not detected...... related to Gram-negative species. Though the Negativicutes stain Gram-negative and possess two membranes, the genome and proteome analysis presented here confirm their place within the (mainly) Gram positive phylum of the Firmicutes. Further studies are required to unveil the evolutionary history...

  19. Embedded Lattice and Properties of Gram Matrix

    Directory of Open Access Journals (Sweden)

    Futa Yuichi

    2017-03-01

    Full Text Available In this article, we formalize in Mizar [14] the definition of embedding of lattice and its properties. We formally define an inner product on an embedded module. We also formalize properties of Gram matrix. We formally prove that an inverse of Gram matrix for a rational lattice exists. Lattice of Z-module is necessary for lattice problems, LLL (Lenstra, Lenstra and Lov´asz base reduction algorithm [16] and cryptographic systems with lattice [17].

  20. Cetacean Community Ecology in the Waters of Sri Lanka and the Bay of Bengal

    Science.gov (United States)

    2013-09-30

    water (e.g., Bay of Bengal), by evaporation and low river runoff (e.g., Arabian Sea), as well as coastal currents, eddy activity, and large-scale...Bay of Bengal. What little research has been done in the region has focused on the river dolphins and near- shore porpoises (e.g., Smith et al. 2008...area in the central Bay of Bengal and the waters of Sri Lanka, including ASIRI cruise transects and mooring lines. Light yellow lines indicate national EEZs. 5

  1. A summer monsoon pump to keep the Bay of Bengal salty

    Digital Repository Service at National Institute of Oceanography (India)

    Vinayachandran, P.N.; Shankar, D; Vernekar, S.; Sandeep, K.K.; Amol, P.; Neema, C.P.; Chatterjee, A.

    Institute of Oceanography, Dona Paula, Goa 403004, India. D R A F T January 21, 2013, 11:04am D R A F T Geophys. Res. Lett., vol.40; 2013; 1777-1782 X - 2 VINAYACHANDRAN ET AL.: BAY OF BENGAL SALT PUMP The Bay of Bengal receives a large influx of freshwater... this saltier water into the rest of the basin, allowing the bay to stay salty despite a large net fresh- water input. D R A F T January 21, 2013, 11:04am D R A F T VINAYACHANDRAN ET AL.: BAY OF BENGAL SALT PUMP X - 3 1. Introduction The Northern Indian Ocean...

  2. Bay of Bengal Monsoon Experiment (BOBMEX) — A component of the Indian Climate Research Programme (ICRP)

    Indian Academy of Sciences (India)

    D R Sikka; P Sanjeeva Rao

    2000-06-01

    The Indian Climate Research Programme (ICRP) focuses on the study of climate variability and its impact on agriculture. To address the role of the Bay of Bengal in monsoon variability, a process study was organised during July-August 1999, deploying research ships, buoys, INSAT, coastal radar and conventional observational systems to collect information about the coupled ocean-atmosphere system over the warm waters of the Bay of Bengal. The paper gives the background of the ICRP and the organisation and implementation of the Bay of Bengal Monsoon Experiment (BOBMEX) in its field phase.

  3. Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.

    Directory of Open Access Journals (Sweden)

    Gowda Cholenahalli LL

    2008-10-01

    Full Text Available Abstract Background Plant genetic resources (PGR are the basic raw materials for future genetic progress and an insurance against unforeseen threats to agricultural production. An extensive characterization of PGR provides an opportunity to dissect structure, mine allelic variations, and identify diverse accessions for crop improvement. The Generation Challenge Program http://www.generationcp.org conceptualized the development of "composite collections" and extraction of "reference sets" from these for more efficient tapping of global crop-related genetic resources. In this study, we report the genetic structure, diversity and allelic richness in a composite collection of chickpea using SSR markers, and formation of a reference set of 300 accessions. Results The 48 SSR markers detected 1683 alleles in 2915 accessions, of which, 935 were considered rare, 720 common and 28 most frequent. The alleles per locus ranged from 14 to 67, averaged 35, and the polymorphic information content was from 0.467 to 0.974, averaged 0.854. Marker polymorphism varied between groups of accessions in the composite collection and reference set. A number of group-specific alleles were detected: 104 in Kabuli, 297 in desi, and 69 in wild Cicer; 114 each in Mediterranean and West Asia (WA, 117 in South and South East Asia (SSEA, and 10 in African region accessions. Desi and kabuli shared 436 alleles, while wild Cicer shared 17 and 16 alleles with desi and kabuli, respectively. The accessions from SSEA and WA shared 74 alleles, while those from Mediterranean 38 and 33 alleles with WA and SSEA, respectively. Desi chickpea contained a higher proportion of rare alleles (53% than kabuli (46%, while wild Cicer accessions were devoid of rare alleles. A genotype-based reference set captured 1315 (78% of the 1683 composite collection alleles of which 463 were rare, 826 common, and 26 the most frequent alleles. The neighbour-joining tree diagram of this reference set represents

  4. Antibacterial activities of β-glucan (laminaran) against gram-negative and gram-positive bacteria

    Science.gov (United States)

    Chamidah, A.; Hardoko, Prihanto, A. A.

    2017-05-01

    This study aimed to determine the antibacterial activity of β-Glucan (laminaran) of LAE and LME extracts from brown algae Sargassum crassifolium using HPMS and Ultrasonication against Gram-positive bacteria (Bacillus subtilis and Staphylococcus aureus) and Gram-negative bacteria (Salmonella typhimurium and Escherichia coli). The highest antibacterial activities of LME extract obtained using the HPMS method against Gram-positive bacteria (B. subtilis and S. aureus) were at 18:10 and 18.80 mm. The ultrasonication method showed a lower inhibition trend than the HPMS method, with MIC and MBC values of 250 mg/ml and 2-8 CFU/ml, respectively, in all Gram-negative and Gram-positive bacteria. The results showed that LME extract at a concentration of 250 mg/mL is bacteriostatic against Gram-positive and -negative bacteria.

  5. Assessment of the estrogenic activities of chickpea (Cicer arietinum L) sprout isoflavone extract in ovariectomized rats

    Institute of Scientific and Technical Information of China (English)

    Hai-rong MA; Jie WANG; Hong-xue QI; Yan-hua GAO; Li-juan PANG; Yi YANG; Zhen-hua WANG

    2013-01-01

    Aim:Chickpea (Cicer arietinum L) is a traditional Uighur herb.In this study we investigated the estrogenic activities of the isoflavones extracted from chickpea sprouts (ICS) in ovariectomized rats.Methods:Ten-week-old virgin Sprague-Dawley female rats were ovariectomized (OVX).The rats were administered via intragastric gavage 3 different doses of ICS (20,50,or 100 mg·kg-1.d-1) for 5 weeks.Their uterine weight and serum levels of 17β-estradiol (E2),follicle stimulating hormone (FSH) and luteinizing hormone (LH) were measured.The epithelial height,number of glands in the uterus,and number of osteoclasts in the femur were histologically quantified,and the expression of proliferating cell nuclear antigen (PCNA) was assessed immunohistochemically.Bone structural parameters,including bone mineral density (BMD),bone volume/tissue volume (BV/TV),trabecular thickness (Tb.Th) and trabecular separation (Tb.Sp) were measured using Micro-CT scanning.Results:Treatments of OVX rats with ICS (50 or 100 mg·kg-1.d-1) produced significant estrogenic effects on the uteruses,including the increases in uterine weight,epithelial height and gland number,as well as in the expression of the cell proliferation marker PCNA.The treatments changed the secretory profile of ovarian hormones and pituitary gonadotropins:serum E2 level was significantly increased,while serum LH and FSH levels were decreased compared with the vehicle-treated OVX rats.Furthermore,the treatments significantly attenuated the bone loss,increased BMD,BV/TV and Tb.Th and decreased Tb.Sp and the number of osteoclasts.Treatment of OVX rats with the positive control drug E2 (0.25 mg·kg-1.d-1) produced similar,but more prominent effects.Conclusion:ICS exhibits moderate estrogenic activities as compared to E2 in ovariectomized rats,suggesting the potential use of ICS for the treatment of menopausal symptoms and osteoporosis caused by estrogen deficiency.

  6. Genome-Wide Analysis of the Aquaporin Gene Family in Chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Deokar, Amit A; Tar'an, Bunyamin

    2016-01-01

    Aquaporins (AQPs) are essential membrane proteins that play critical role in the transport of water and many other solutes across cell membranes. In this study, a comprehensive genome-wide analysis identified 40 AQP genes in chickpea (Cicer arietinum L.). A complete overview of the chickpea AQP (CaAQP) gene family is presented, including their chromosomal locations, gene structure, phylogeny, gene duplication, conserved functional motifs, gene expression, and conserved promoter motifs. To understand AQP's evolution, a comparative analysis of chickpea AQPs with AQP orthologs from soybean, Medicago, common bean, and Arabidopsis was performed. The chickpea AQP genes were found on all of the chickpea chromosomes, except chromosome 7, with a maximum of six genes on chromosome 6, and a minimum of one gene on chromosome 5. Gene duplication analysis indicated that the expansion of chickpea AQP gene family might have been due to segmental and tandem duplications. CaAQPs were grouped into four subfamilies including 15 NOD26-like intrinsic proteins (NIPs), 13 tonoplast intrinsic proteins (TIPs), eight plasma membrane intrinsic proteins (PIPs), and four small basic intrinsic proteins (SIPs) based on sequence similarities and phylogenetic position. Gene structure analysis revealed a highly conserved exon-intron pattern within CaAQP subfamilies supporting the CaAQP family classification. Functional prediction based on conserved Ar/R selectivity filters, Froger's residues, and specificity-determining positions suggested wide differences in substrate specificity among the subfamilies of CaAQPs. Expression analysis of the AQP genes indicated that some of the genes are tissue-specific, whereas few other AQP genes showed differential expression in response to biotic and abiotic stresses. Promoter profiling of CaAQP genes for conserved cis-acting regulatory elements revealed enrichment of cis-elements involved in circadian control, light response, defense and stress responsiveness

  7. Agro-productive evaluation of 11 chickpea varieties (Cicer arietinum, L. in a oxisol soil in the municipality Las Tunas

    Directory of Open Access Journals (Sweden)

    Raquel Ruz Reyes

    2016-03-01

    Full Text Available A field experiment, in order to evaluate the performance of 11 chickpea (Cicer arietinum, L. cultivated varieties was carried out in the La Estrella farm, Cooperative of Credit and Service “Eduardo Pérez Sánchez”, Las Tunas municipaliaty during december 2010 to march 2011. The cultivars evaluate were N-5 HA, NAC-6, NAC-24, NAC-29, NAC-30 NAC-31, NAC-37, J-96, Mocorito-88, L-25 and JP-94, (local genotype as control. A random block design with four replicates was employed for evaluating physiological and field indicators. The dry plant mass, number pots and grain by plant, and weight of 100 grains of Mocorito-88 cultivar were larger.

  8. Differences between easy- and difficult-to-mill chickpea (Cicer arietinum L.) genotypes. Part I: broad chemical composition.

    Science.gov (United States)

    Wood, Jennifer A; Knights, Edmund J; Campbell, Grant M; Choct, Mingan

    2014-05-01

    Ease of milling is an important quality trait for chickpeas (Cicer arietinum L.) and involves two separate processes: removal of the seed coat and splitting of cotyledons. Four chickpea genotypes (two desi types, one kabuli type and one interspecific hybrid with 'wild' C. echinospermum parentage) of differing ease of milling were examined to identify associated seed composition differences in the seed coat, cotyledons and their junctions (abaxial and adaxial). Several components in different fractions were associated with ease of milling chickpea seeds: primarily soluble and insoluble non-starch polysaccharides (including pectins) and protein at the seed coat and cotyledon junctions, and the lignin content of the seed coat. This study shows that the chemical composition of chickpea does vary with seed type (desi and kabuli) and within desi genotypes in ways that are consistent with physical explanations of how seed structure and properties relate to milling behaviour. © 2013 Society of Chemical Industry.

  9. Distribution of some biochemical compounds in the sediments of the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Bhosle, N.B.; Dhople, V.M.

    Surficial sediment samples collected from the continental shelf and slope of the Bay of Bengal were studied for the distribution of organic carbon and its constituent fractions such as carbohydrates, proteins, amino acids and lipids. Organic carbon...

  10. Water characteristics, mixing and circulation in the Bay of Bengal during southwest monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Sarma, Y.V.B.; Rao, D.P.; Murty, C.S.

    Influence of the freshwater influx, the wind forcing and the Indian Ocean monsoon drift current on the property distributions and the circulation in the Bay of Bengal during southwest monsoon has been quantified. At the head of the Bay, waters...

  11. Subsurface oscillations at an oceanic station in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, Y.V.B.; Sarma, M.S.S.; Charyulu, R.J.K.; Rao, D.P.

    Surface wind, atmospheric pressure and the temperature profiles in the upper layers at an oceanic station off west of Andaman Island in the Bay of Bengal have been analysed to examine the causes for the observed subsurface oscillations...

  12. Can we predict the frequency of cyclones over Bay of Bengal during October-December?

    Digital Repository Service at National Institute of Oceanography (India)

    Sadhuram, Y.

    Forecasting cyclone activity in Australian (Nicholls, 1984; 1992) and southern Pacific (Revell and Goulter, 1986) regions with SO (Southern Oscillation) and the influence of El-Nino-Southern Oscillation (ENSO) on Bay of Bengal cyclones (Felton et al...

  13. Seasonal and spatial distribution of particulate organic matter in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, L.; Bhosle, N.B.; Matondkar, S.G.P.; Bhushan, R.

    The temporal, spatial and depth related variation of suspended particulate organic matter (POM) in the Bay of Bengal are assessed in this paper. For this purpose, suspended particulate matter (SPM) samples were collected from eight depths (2 to 1000...

  14. Subsurface chlorophyll maxima in the north-western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.; Aswanikumar, V.

    The depth profiles of phytoplankton pigments in the north-western Bay of Bengal are generally characterizEd. by a subsurface chlorophyll maximum. The occurrence of subsurface chlorophyll maxima is discussed in relation to other information on water...

  15. Natural isotopic composition of nitrogen in suspended particulate matter in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Kumar, S.; Ramesh, R.; Bhosle, N.B.; Sardessai, S.; Sheshshayee, M.S.

    The first measurements of nitrogen isotopic composition (delta sup(15) N) in suspended particulate matter (SPM) of the surface Bay of Bengal (BOB) at 24 different locations during pre- (April-May 2003) and post- (September-October 2002) monsoon...

  16. Estimates of vertical velocities and eddy coefficients in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Varkey, M.J.; Sastry, J.S.

    Vertical velocities and eddy coefficients in the intermediate depths of the Bay of Bengal are calculated from mean hydrographic data for 300 miles-squares. The linear current density (sigma- O) versus log-depth plots show steady balance between...

  17. Marine magnetic studies in the northern Bay of Bengal, preliminary results

    Digital Repository Service at National Institute of Oceanography (India)

    Ramana, M.V.; Subrahmanyam, V.; Krishna, K.S.; Chaubey, A.K.; Sarma, K.V.L.N.S.; Murty, G.P.S.; Murty, P.S.N.; Rao, D.G.; Mittal, G.S.; Drolia, R.K.

    The bathymetric and total magnetic intensity data collected along six E-W tracks were analysed and presented as stacked anomaly profiles. A first order basement configuration model was generated across the Bay of Bengal. The model studies indicate...

  18. Transport and potential vorticity in the Bay of Bengal during the southwest monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Murty, C.S.; Sarma, Y.V.B.; Rao, D.P.; Sastry, J.S.; Rao, G.R.L.

    In the Bay of Bengal, the water transport and potential vorticity (PV) during the southwest monsoon are examined through the prevailing thermohaline and wind-driven circulation. The Indian Monsoon Current (IMC) and the north flowing Eastern Boundary...

  19. Reference sound speed profile and related ray acoustics of Bay of Bengal for tomographic studies

    Digital Repository Service at National Institute of Oceanography (India)

    PrasannaKumar, S.; Murty, T.V.R.; Somayajulu, Y.K.; Chodankar, P.V.; Murty, C.S.

    Using the archived hydrographic data, a climatological mean sound speed profile has been developed for the Bay of Bengal which will serve as an input (reference profile) to acoustic models. This profile is depth limited with the effective acoustic...

  20. Particulate carbohydrate in the euphotic zone of the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Bhosle, N.B.; DeSilva, C.; Shirodkar, P.V.; Reddy, C.V.G.

    Particulate matter collected from the Bay of Bengal was analysed for carbohydrate and chlorophyll a. The distribution of chlorophyll a was different from that of carbohydrate. Chlorophyll a increased from north to south, whereas carbohydrate levels...

  1. A first note on Japanese encephalitis virus isolation from Culex quinquefasciatus Say in Northern West Bengal.

    Directory of Open Access Journals (Sweden)

    V. Thenmozhi

    2014-03-01

    Full Text Available Japanese encephalitis (JE is endemic in many parts of India including the state of West Bengal. In West Bengal, the first major outbreaks of JE occurred in the districts of Bankura and Burdwan in 1973. The Culex vishnui subgroup of mosquitoes has been implicated as major vectors of JE. However in India, JE virus (JEV has been isolated from 16 species of mosquitoes. During September 2011, JE cases were reported from four districts -Jalpaiguri, Darjeeling, Dinajpur and Cooch Behar of West Bengal (North. Adult mosquitoes were collected, identified, pooled and screened for JEV using antigen capture ELISA. Out of 279 mosquito pools tested, one pool of Cx. pseudovishnui and three pools of Cx. quinquefasciatus were found positive for JEV. The ELISA positive pools were further confirmed as JEV by insect bioassay (Toxo-IFA. Two pools of Cx. quinquefasciatus were confirmed as JEV. This represents the first report of JEV isolation from Cx. quinquefasciatus in West Bengal.

  2. Geomorphology and geology of the Bay of Bengal and the Andaman Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, V.P.; Kessarkar, P.M.

    -slope region. The 'Bengal Fan' is a major physiographic feature. The Andaman Sea consists of several seamounts, valleys and fracture zones. Reefal structures occur around the Andaman Islands and on the outer shelf off Visakhapatnam. Lithogenic sediments (clayey...

  3. Sound field computations in the Bay of Bengal using parabolic equation method

    Digital Repository Service at National Institute of Oceanography (India)

    Navelkar, G.S.; Somayajulu, Y.K.; Murty, C.S.

    Effect of the cold core eddy in the Bay of Bengal on acoustic propagation was analysed by parabolic equation (PE) method. Source depth, frequency and propagation range considered respectively for the two numerical experiments are 150 m, 400 Hz, 650...

  4. Contrasting phytoplankton community structure and associated light absorption characteristics of the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Pandi, S.R.; Kiran, R.; Sarma, N.S.; Srikanth, A.S.; Sarma, V.V.S.S.; Krishna, M.S.; Bandyopadhyay, D.; Prasad, V.R.; Acharyya, T.; Reddy, K.G.

    Absorption spectra, particulate pigments, and hydrochemical constituents were measured in the western Bay of Bengal (BoB) during July-August 2010 when influence of river discharge is at peak. Chromophoric dissolved organic matter (CDOM) absorption...

  5. Seasonal cycle of physical forcing and biological response in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    PrasannaKumar, S.; Nuncio, M.; Narvekar, J.; Ramaiah, N.; Sardessai, S.; Gauns, M.; Fernandes, V.; Paul, J.T.; Jyothibabu, R.; Jayaraj, K.A.

    supported an efficient nutrient supply by cold core eddies. It resulted in the highest mean column integrated chlorophyll as well as primary productivity. Perennially low surface chlorophyll in the Bay of Bengal was largely controlled by the physical...

  6. Biochemical composition and caloric potential of zooplankton from Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sreepada, R.A.; Rivonker, C.U.; Parulekar, A.H.

    Proximate composition and variations in protein, lipid, carbohydrate, ash and organic carbon in zooplankton from 42 stations in the Bay of Bengal are reported. Average percentages of moisture, protein, lipid, carbohydrate, ash and carbon were 85...

  7. Raman tomography of Himalayan-derived muds (Bengal Shelf)

    Science.gov (United States)

    Borromeo, Laura; Andò, Sergio; Aliatis, Irene; France-Lanord, Christian; Garzanti, Eduardo

    2013-04-01

    Raman mineral analysis (RaMAn) is an innovative, efficient and user-friendly technique representing the ideal tool to perform provenance analysis of silt-sized sediments, which represent most of the sediment flux in river systems and the predominant grain size in large deltas and submarine fans (Andò et al., 2011). RaMAn allows in fact the reliable recognition of detrital grains down to 5 μm in size. The Ganga-Brahmaputra estuary in Bangladesh represents the largest single entry point of detritus in the world oceans. Between 1 and 2 billion tons of sediment each year has been reaching the Bengal Sea during most of the Neogene, feeding the world largest submarine fan (Goodbred and Kuehl, 2000; Galy and France-Lanord 2001). In order to detect the compositional differences between the fluvial environment (Garzanti et al., 2010; 2011) and the deep sea (Thompson, 1974; Yokohama et al., 1990) as well as the mineralogical variability associated with hydrodynamic sorting in the delta plain and proximal shelf, we have determined the mineralogical composition of largely Himalayan-derived muds deposited on the Bengal Shelf. Mineralogical analyses were carried out separately for four grain-size classes of 4 samples: (5-10 μm, 10-15 μm, 15-32 μm, >32 μm). Each class was separated into low-density (2.90 g/cm3) by centrifuging in sodium polytungstate and recovered by partial freezing with liquid nitrogen. Accurate quantitative mineralogical data were obtained by identifying at least 100 grains on each slide. RaMAn resulted to be essential for confident mineral identification, and helped us to reveal the nature of altered and opaque grains that cannot be identified under the optical microscope. Andò S.,Vignola P., Garzanti E., (2011). Raman counting: a new method to determine provenance of silt. Rendiconti Lincei, 22, Issue 4, pp 327-347; Galy A., France-Lanord C., (2001), Higher erosion rates in the Himalaya geochemical constraints on riverine fluxes. Geology, 29, pp. 23

  8. Wind Atlas of Bay of Bengal with Satellite Wind Measurement

    DEFF Research Database (Denmark)

    Nadi, Navila Rahman

    The objective of this study is to obtain appropriate offshore location in the Bay of Bengal, Bangladesh for further development of wind energy. Through analyzing the previous published works, no offshore wind energy estimation has been found here. That is why, this study can be claimed as the first...... footstep towards offshore wind energy analysis for this region. Generally, it is difficult to find offshore wind data relative to the wind turbine hub heights, therefore a starting point is necessary to identify the possible wind power density of the region. In such scenario, Synthetic aperture radars (SAR......) have proven useful. In this study, SAR based dataset- ENVISAT ASAR has been used for Wind Atlas generation. Furthermore, a comparative study has been performed with Global Wind Atlas (GWA) to determine a potential offshore wind farm. Additionally, the annual energy production of that offshore windfarm...

  9. Protamine-induced permeabilization of cell envelopes of gram-positive and gram-negative bacteria

    DEFF Research Database (Denmark)

    Johansen, Charlotte; Verheul, A.; Gram, Lone;

    1997-01-01

    carboxyfluorescein and ATP after 2 to 5 min. Maximum antibacterial activity was reached at alkaline pH and in the absence of divalent cations. The efficient permeabilization of cell envelopes of both gram-positive and gram-negative bacteria suggests that protamine causes a general disruption of the cell envelope...

  10. Refining the Bengal Fan stratigraphy - A first correlation of IODP Expedition 354 results and seismic data from the Bay of Bengal

    Science.gov (United States)

    Schwenk, Tilmann; Spiess, Volkhard; Bergmann, Fenna; France-Lanord, Christian; Klaus, Adam

    2016-04-01

    The Bengal Fan covers the floor of the entire Bay of Bengal from the continental margins of India and Bangladesh to the sediment-filled Sunda Trench off Myanmar and the Andaman Islands, and along the west side of the Ninetyeast Ridge. The deposition and progradation of the Bengal Fan started in the Eocene after the collision of India with Asia resulting in the build-up of the Himalaya and the formation of a large proto-Bay of Bengal. Continued convergence of the Indian and Australian plates with the Southeast Asian plate reduced the size of the bay and focused the source of turbidites finally into the present Bengal Basin, Bangladesh shelf, and the shelf canyon "Swatch of no Ground". Today, the Bengal Fan is mainly fed by the sediment load of the Ganges and Brahmaputra rivers, which drain the Himalayas at its southern and northern slope, respectively, and deliver their load to the delta in the Bengal Basin, to the Bengal Shelf and to the deep sea fan. Thus the Bengal Fan is a suitable recorder to study interactions among the growth of the Himalaya and Tibet, the development of the Asian monsoon, and processes affecting the carbon cycle and global climate. Because sedimentation in the Bengal Fan responds to both, climate and tectonic processes, its terrigenous sediment records the past evolution of both the Himalaya and regional climate. This evolution is also expressed in the stratigraphy of the fan in terms of unconformities and key horizons, average sedimentation rates as a function of distance from the basement ridges at 85°E and 90°E and the presence or absence of channel-levee systems. The histories of the Himalaya/Tibetan system and the Asian monsoon require sampling different periods of time with different levels of precision. Therefore IODP Expedition 354 drilled in February-March 2015 a seven site, 320 km-long transect across the Bengal Fan at 8°N. This strategy has been chosen because sediment transport took place by turbidity currents following

  11. Revisiting the gram-negative lipoprotein paradigm

    Science.gov (United States)

    The processing of lipoproteins (lpps) in Gram-negative bacteria is generally considered to be an essential pathway. Mature lipoproteins in these bacteria are triacylated, with the final fatty acid addition performed by Lnt, an apolipoprotein n-acyltransferase. The mature lipoproteins are then sorted...

  12. Revisiting the Gram-Negative Lipoprotein Paradigm

    Science.gov (United States)

    LoVullo, Eric D.; Wright, Lori F.; Isabella, Vincent; Huntley, Jason F.

    2015-01-01

    ABSTRACT The processing of lipoproteins (Lpps) in Gram-negative bacteria is generally considered an essential pathway. Mature lipoproteins in these bacteria are triacylated, with the final fatty acid addition performed by Lnt, an apolipoprotein N-acyltransferase. The mature lipoproteins are then sorted by the Lol system, with most Lpps inserted into the outer membrane (OM). We demonstrate here that the lnt gene is not essential to the Gram-negative pathogen Francisella tularensis subsp. tularensis strain Schu or to the live vaccine strain LVS. An LVS Δlnt mutant has a small-colony phenotype on sucrose medium and increased susceptibility to globomycin and rifampin. We provide data indicating that the OM lipoprotein Tul4A (LpnA) is diacylated but that it, and its paralog Tul4B (LpnB), still sort to the OM in the Δlnt mutant. We present a model in which the Lol sorting pathway of Francisella has a modified ABC transporter system that is capable of recognizing and sorting both triacylated and diacylated lipoproteins, and we show that this modified system is present in many other Gram-negative bacteria. We examined this model using Neisseria gonorrhoeae, which has the same Lol architecture as that of Francisella, and found that the lnt gene is not essential in this organism. This work suggests that Gram-negative bacteria fall into two groups, one in which full lipoprotein processing is essential and one in which the final acylation step is not essential, potentially due to the ability of the Lol sorting pathway in these bacteria to sort immature apolipoproteins to the OM. IMPORTANCE This paper describes the novel finding that the final stage in lipoprotein processing (normally considered an essential process) is not required by Francisella tularensis or Neisseria gonorrhoeae. The paper provides a potential reason for this and shows that it may be widespread in other Gram-negative bacteria. PMID:25755189

  13. Surface layer temperature inversion in the Bay of Bengal

    Science.gov (United States)

    Thadathil, Pankajakshan; Gopalakrishna, V. V.; Muraleedharan, P. M.; Reddy, G. V.; Araligidad, Nilesh; Shenoy, Shrikant

    2002-10-01

    Surface layer temperature inversion occurring in the Bay of Bengal has been addressed. Hydrographic data archived in the Indian Oceanographic Data Center are used to understand various aspects of the temperature inversion of surface layer in the Bay of Bengal, such as occurrence time, characteristics, stability, inter-annual variability and generating mechanisms. Spatially organized temperature inversion occurs in the coastal waters of the western and northeastern Bay during winter (November-February). Although the inversion in the northeastern Bay is sustained until February (with remnants seen even in March), in the western Bay it becomes less organized in January and almost disappears by February. Inversion is confined to the fresh water induced seasonal halocline of the surface layer. Inversions of large temperature difference (of the order of 1.6-2.4°C) and thin layer thickness (10-20 m) are located adjacent to major fresh water inputs from the Ganges, Brahmaputra, Irrawaddy, Krishna and Godavari rivers. The inversion is stable with a mean stability of 3600×10 -8 m -1. Inter-annual variability of the inversion is significantly high and it is caused by the inter-annual variability of fresh water flux and surface cooling in the northern Bay. Fresh water flux leads the occurrence process in association with surface heat flux and advection. The leading role of fresh water flux is understood from the observation that the two occurrence regions of inversion (the western and northeastern Bay) have proximity to the two low salinity (with values about 28-29‰) zones. In the western Bay, the East India Coastal Current brings less saline and cold water from the head of the Bay to the south-west Bay, where it advects over warm, saline water, promoting temperature inversion in this region in association with the surface heat loss. For inversion occurring in the northeastern Bay (where the surface water gains heat from atmosphere), surface advection of the less saline

  14. Spectral aerosol optical depths over Bay of Bengal and Chennai: I—measurements

    Science.gov (United States)

    Ramachandran, S.; Jayaraman, A.

    A cruise experiment to study the aerosol optical characteristics was conducted in February-March 2001 over the Bay of Bengal, a data void region. An analysis of aerosol optical depths (AODs) measured onboard Sagar Kanya shows that the AODs are higher when compared to those measured over the west coast of India and the Arabian Sea. The mean AODs at 0.5 μm over the Bay of Bengal are in the range of 0.2-0.7, and are found to show a variation of about 40-50% in the wavelength region of 0.4- 0.85 μm. The mean wavelength exponent α over the Bay of Bengal is found to be 1.80, higher than the Arabian Sea value of 1.46, indicating a relatively higher concentration of submicron size particles. The mean Ångström coefficient β, which represents the columnar aerosol loading, over the Bay of Bengal is found to be 0.10. Measurements of AODs, made before and after the cruise in Chennai, an urban station located on the eastern coast of India, show higher values compared to the Bay of Bengal data. The mean α for Chennai is found to be 1.53, which is lower than the Bay of Bengal value while the mean β is higher at 0.18. While a higher α value indicates the dominance of smaller size particles over Bay of Bengal, a higher β and a higher AOD at all wavelengths indicate the dominance of both bigger and smaller particles over Chennai. A comparison of AODs obtained over a coastal station Trivandrum, located on the southwest coast of India, during March 2001 showed that in the smaller wavelength range the Chennai AODs are higher while above 0.6 μm the AODs are comparable. The day-to-day variations of AODs measured at Chennai are less significant when compared to Bay of Bengal and are below 10%. As Chennai is an urban, industrial and a well-populated city, and is a constant source of aerosol particles, there are lesser day-to-day variations in the AOD, while over the Bay of Bengal the air masses come from different source regions carrying aerosols of different chemical and

  15. The Antimicrobial Effect of Lactoferrin on Gram-Negative and Gram-Positive Bacteria

    Directory of Open Access Journals (Sweden)

    Jahani

    2015-07-01

    Full Text Available Background Lactoferrin is a multipurpose protein of the transferrin domestic. It is a spherical glycoprotein with a molecular weight of about 80 kDa which is widely found in secretory discharges, such as milk, saliva, tear, and nasal secretions. Lactoferrin is also found in secondary granules of polymorphonuclear leukocytes (PMN and is released by some acinar cells. It also shows antibacterial activity in vitro. The antimicrobial activity of lactoferrin is due to its ability to bind to iron and make it unavailable to bacteria. Lactoferrin is a major component of the immune system; antibacterial activity is an important component of the innate immunity of the body. Objectives The purpose of this study was to evaluate the effect of lactoferrin on two different species of Gram-negative and Gram-positive bacteria. Materials and Methods The purity of lactoferrin was assessed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE. Gram-positive and Gram-negative bacteria were collected from different clinical specimens such as wound, blood, secretions, urine, stool, and sputum from Namazi Hospital of Shiraz. The colony counting assays were conducted according to the Clinical and Laboratory Standards Institute (CLSI and American Society for Testing and Materials (ASTM G22-76 guidelines. Results The results showed lactoferrin to be effective on both Gram-positive (Staphylococcus epidermidis, Bacillus cereus and Gram-negative (Campylobacter jejuni, Salmonella bacteria. However, it was more effective on the Gram-positive rather than the Gram-negative bacteria. Conclusions Lactoferrin is able to bind to iron as one of its important features. It plays an important role in signal transduction and is anticancer, anti-adhesion, immune-modulatory, and antiviral. Regarding the increase of resistance to antibiotics, it is necessary to explore novel antimicrobial drugs.

  16. Assessing the suitability of benthic foraminiferal morpho-groups to reconstruct paleomonsoon from Bay of Bengal

    Indian Academy of Sciences (India)

    M Manasa; Rajeev Saraswat; Rajiv Nigam

    2016-04-01

    Temporal changes in benthic foraminiferal morpho-groups were suggested as an effective proxy to reconstructpast monsoon intensity from the Arabian Sea. Here, in order to test the applicability of temporalvariation in morpho-groups to reconstruct past monsoon intensity from the Bay of Bengal, we havedocumented recent benthic foraminiferal distribution from the continental shelf region of the northwesternBay of Bengal. Based on the external morphology, benthic foraminifera were categorized intorounded symmetrical (RSBF) and angular asymmetrical benthic foraminifera (AABF). Additionally, afew other dominant groups were also identified based on test composition (agglutinated, calcareous) andabundance (Asterorotalids and Nonions). The relative abundance of each group was compared with theambient physico-chemical conditions, including dissolved oxygen, organic matter, salinity and temperature.We report that the RSBF are abundant in comparatively warm and well oxygenated waters of lowsalinity, suggesting a preference for high energy environment, whereas AABF dominate relatively cold,hypersaline deeper waters with low dissolved oxygen, indicating a low energy environment. The agglutinatedforaminifera, Asterorotalids and Nonions dominate shallow water, low salinity regions, whereasthe calcareous benthic foraminiferal abundance increases away from the riverine influx regions. Foodavailability, as estimated from organic carbon abundance in sediments, has comparatively less influenceon faunal distribution in the northwestern Bay of Bengal, as compared to dissolved oxygen, temperatureand salinity. We conclude that the factors associated with freshwater influx affect the distributionof benthic foraminiferal morpho-groups in the northwestern Bay of Bengal and thus it can be used toreconstruct past monsoon intensity from the Bay of Bengal.

  17. Gram positive and Gram negative bacteria differ in their sensitivity to cold plasma

    Science.gov (United States)

    Mai-Prochnow, Anne; Clauson, Maryse; Hong, Jungmi; Murphy, Anthony B.

    2016-12-01

    Cold atmospheric-pressure plasma (CAP) is a relatively new method being investigated for antimicrobial activity. However, the exact mode of action is still being explored. Here we report that CAP efficacy is directly correlated to bacterial cell wall thickness in several species. Biofilms of Gram positive Bacillus subtilis, possessing a 55.4 nm cell wall, showed the highest resistance to CAP, with less than one log10 reduction after 10 min treatment. In contrast, biofilms of Gram negative Pseudomonas aeruginosa, possessing only a 2.4 nm cell wall, were almost completely eradicated using the same treatment conditions. Planktonic cultures of Gram negative Pseudomonas libanensis also had a higher log10 reduction than Gram positive Staphylococcus epidermidis. Mixed species biofilms of P. aeruginosa and S. epidermidis showed a similar trend of Gram positive bacteria being more resistant to CAP treatment. However, when grown in co-culture, Gram negative P. aeruginosa was more resistant to CAP overall than as a mono-species biofilm. Emission spectra indicated OH and O, capable of structural cell wall bond breakage, were present in the plasma. This study indicates that cell wall thickness correlates with CAP inactivation times of bacteria, but cell membranes and biofilm matrix are also likely to play a role.

  18. Assessment of Rose Bengal test in diagnosing Egyptian human brucellosis.

    Science.gov (United States)

    El-Fekhfakh, Effat Abdel-Monaem; Hassanain, Nawal Abdel-Hafiz; El-Folly, Runia Fouad; El-Hariri, Hazem

    2011-08-01

    A total of 30 patients suffering from brucellosis were suspected based on history taking, clinical manifestations and positive serum tube agglutination test (at titer > or = 1/160). The followings were done for all cases; complete blood picture (differential leucocytic count) and liver function tests, serodiagnosis of Brucella (serum tube agglutination test (STAT) as well as Rose Bengal test (RBT) and PCR. The study aimed to analyze the diagnostic value of RBT as compared to STAT and PCR for human brucellosis, and to evaluate the sensitivity, specificity, accuracy, the cost and the time consuming of RBT as compared to STAT and PCR. There was a significant difference between diagnosis by RBT and both STAT > or = 1/640, & STAT > or = 1/1280. Also, there was a significant difference between PCR and both STAT > or = 1/640, and STAT > or = 1/1280. No significant difference was detected between RBT in diagnosing acute and chronic infection. STAT > or = 1/320 proved to be better than STAT at other titers and RBT in diagnosis of brucellosis. RBT proved to be suitable as screening test regarding time (faster) and cost. But, STAT > or = 1/320 from a practical and economic point of views proved to be the best one in diagnosing human brucellosis.

  19. Distribution of particulate carbohydrate species in the Bay of Bengal

    Indian Academy of Sciences (India)

    Vishwas B Khodse; Narayan B Bhosle; V V Gopalkrishna

    2009-04-01

    Suspended particulate matter (SPM)of surface seawaters was collected during December 2003 to October 2004 at 10 stations in the Bay of Bengal,and analyzed for particulate organic carbon (POC),total particulate nitrogen (TPN),total particulate carbohydrate (TPCHO)and total particulate uronic acids (TPURA).The concentrations of POC,TPCHO and TPURA varied from 4.80 to 29.12,0.85 to 4.24,0.09 to 0.91 C,respectively.The TPCHO-C and TPURA-C accounted for 6.6 –32.5%and 0.87 –3.65%of POC.The trends observed for the distribution of these compounds were generally similar to those recorded for the distribution of chlorophyll (Chl ) .The C/N ratios varied from 3.2 to 22.3 with most of the values being > 10.This suggests that the organic matter was mostly derived from phytoplankton and bacteria.Relatively low C/N ratios and high TPCHO yield imply that freshly derived organic matter was present during SWM and FIM.Our data suggest that the quality and quantity of organic matter varied spatially and seasonally.

  20. Spatial and temporal variability of chlorophyll in Bay of Bengal.

    Science.gov (United States)

    Jutla, A.; Akanda, S.; Islam, S.

    2009-04-01

    The Bay of Bengal (BoB) receives approximately 628 km3/ year of freshwater discharge from the Ganges and Brahmaputra rivers. Freshwater discharge from rivers increases the nutrient load and thereby enhances phytoplankton production in the BoB. Cholera, an infectious water-borne disease caused by bacterium Vibrio cholerae, remains endemic in the BoB region. Phytoplankton provides favorable environment for survival of cholera bacteria. Therefore, for development of any predictive model for cholera, it is important to quantify the spatial and temporal variability of phytoplankton in the BoB. Satellite remote sensing is the most effective way to quantify this variability over a range of space and time scales. Using ten years (1998-2007) of daily, weekly and monthly SeaWiFs chlorophyll, a surrogate variable for measuring phytoplankton, imagery we explore the spatial pattern and dominant temporal variability of chlorophyll over the BoB region. We find that chlorophyll in the coastal waters has more variability, both in temporal and spatial scales, than the offshore waters. Mechanism of production and space-time variability of coastal chlorophyll is different from those of offshore chlorophyll. While coastal chlorophyll is dominated by influx of terrestrial nutrients through river discharge, chlorophyll in the offshore region is primarily controlled by oceanic processes. We will also explore issues related to dominant space and time scales of chlorophyll variations in the entire bay.

  1. Arsenic incorporation into authigenic pyrite, Bengal Basin sediment, Bangladesh

    Science.gov (United States)

    Lowers, H.A.; Breit, G.N.; Foster, A.L.; Whitney, J.; Yount, J.; Uddin, Md. N.; Muneem, Ad. A.

    2007-01-01

    Sediment from two deep boreholes (???400 m) approximately 90 km apart in southern Bangladesh was analyzed by X-ray absorption spectroscopy (XAS), total chemical analyses, chemical extractions, and electron probe microanalysis to establish the importance of authigenic pyrite as a sink for arsenic in the Bengal Basin. Authigenic framboidal and massive pyrite (median values 1500 and 3200 ppm As, respectively), is the principal arsenic residence in sediment from both boreholes. Although pyrite is dominant, ferric oxyhydroxides and secondary iron phases contain a large fraction of the sediment-bound arsenic between approximately 20 and 100 m, which is the depth range of wells containing the greatest amount of dissolved arsenic. The lack of pyrite in this interval is attributed to rapid sediment deposition and a low sulfur flux from riverine and atmospheric sources. The ability of deeper aquifers (>150 m) to produce ground water with low dissolved arsenic in southern Bangladesh reflects adequate sulfur supplies and sufficient time to redistribute the arsenic into pyrite during diagenesis.

  2. PHYSIOLOGICAL STRAIN AMONG WOMEN POTATO CULTIVATORS IN WEST BENGAL, INDIA.

    Science.gov (United States)

    Pal, Amitava; De, Sujaya; Sengupta, Piyali; Maity, Payel; Mahata, Hiranmoy; Shaikh, Saijuddin; Dhara, Prakash C

    2015-12-01

    The present study was aimed to evaluate physiological strain among women cultivators engaged in potato cultivation. The cross-sectional descriptive study was conducted on 150 women participants in different districts of West Bengal State, India. The physiological strain was evaluated by working heart rate, blood lactate and oxygen consumption. The average working heart rate was 109.97 ± 9.94 beats/min when all tasks were considered together. According to the working heart rate, oxygen consumption and energy cost, the potato cultivation job was categorized as a moderate work category. Whereas, according to cardiovascular stress index (CSI), all tasks of potato cultivation were categorized into a stressful category. The more experienced workers were more productive than their less experienced counterparts, and this increased productivity appeared to be a combination of greater efficiency and greater physical exertion. Stepwise multiple linear regression analyses revealed that work pace and work experience had significant association with all the indices of physiological strain. Work pace had strongest significant impact on these indices even after controlling the effect of age, work experience and efficiency. It was concluded that during performing potato cultivation tasks the workers had a great extent of physiological strain.

  3. Status of Bay of Bengal: An Ecological Point of View

    Directory of Open Access Journals (Sweden)

    Pai IK

    2010-04-01

    Full Text Available The marine resources are a major source of food, a reservoir of minerals, major suppliers of oxygen, regulator of climate. It is also an ultimate dumping ground for the mounting burden of human waste material. Due to unchecked anthropogenic activity in recent years, the physico-chemical and biological status of the marine environments have changed significantly. This has resulted in the changing environmental scenario of the world. The Bay of Bengal, is one of the largest Bay in the world known to receive large flow of sediments from several rivers and other water bodies from India, Bhutan, Bangladesh, Myanmar, Indonesia etc., Many of these rivers bring along with them, a large quantity of effluents from cities / towns located on either side of these rivers, thus making the Bay nutrient rich. This Bay also plays a major role in determining the climatic conditions of India and other South East Asian countries. Thus its ecology is of paramount interest. Further, the Bay is also known for its oligotrophic nature as well low productivity, thus resulting in high diversity of flora and fauna. The ecological status of the Bay has a direct bearing on the lifescape of the Bay, and therefore, a study was undertaken to understand abiotic and biotic factors with special reference to zooplankton. Based on the observations, the study recommends certain appropriate measures to be taken to conserve the ecology of one of the largest Bay in the world.

  4. Comparative accounts of biological productivity characteristics and estimates of carbon fluxes in the Arabian Sea and the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Gauns, M.; Madhupratap, M.; Ramaiah, N.; Jyothibabu, R.; Fernandes, V.; Paul, J.T.; PrasannaKumar, S.

    into the surface waters thereby reducing the primary production in the Bay of Bengal. The total living carbon content in the Bay of Bengal is much lower than in the Arabian Sea. Higher downward fluxes associated with deep mixed layer and high production...

  5. Identification of antibacterial secondary metabolite from marine Streptomyces sp. VITBRK4 and its activity against drug resistant Gram positive bacteria

    Directory of Open Access Journals (Sweden)

    Benita Mercy R

    2013-12-01

    Full Text Available Drug resistance by bacterial pathogens becomes a major health problem worldwide. Hence, it is important to search for broad spectrum of antibiotic from natural sources. Marine actinomycetes isolated from marine sediments collected at different sampling sites along the southeast coast of Bay of Bengal, India were investigated for antagonistic activity against selected drug resistant Gram positivebacterial pathogens. All actinomycetes isolates were screened for antibacterial activity against standard drug resistant ATCC strains. The potential isolate which showed higher inhibitory activity against drug resistant pathogens was mass cultured and the ethyl acetate (EA extract of the cell free culture broth was tested for antibacterial activity. The biochemical, morphological and physiological characterisation of the isolate revealed that it was Gram-positive rod, sporulating and produced grey aerial mycelium. The spore chain morphology, and smooth surface morphology showed that it belongs to the genus Streptomyces.Based on Nonomura’s key for classification of Streptomycesand Bergey’s Manual of Determinative Bacteriology, the isolatewas identified as Streptomyces species and designated as Streptomyces sp. VITBRK4.Purification and characterization of EA extract of the isolate by thin layer chromatography (TLC and HPLC-DAD analysis showed the presence of indolo compound along with few other unidentified metabolites. The result of this study showed that the antibacterial activity of the EA extract against drug resistant strains may be due to indolo compound present in the extract.

  6. Full case study report: Gram Slot/Rema1000 - Denmark

    OpenAIRE

    Laursen, Klaus Brønd; Noe, Egon; Kjeldsen, Chris

    2015-01-01

    The Gram Slot/Rema 1000 case is a food chain, which consists of organic dairy products made by Gram Slot and sold by the supermarket chain Rema 1000 Gram Slot has another branch of their enterprise, consisting of a number of leisure and cultural activities taking place at Gram Slot. In terms of agricultural products the food chain studied involves one major producer, Gram Slot. The distribution of the agricultural products takes place partly through Gram Slot’s own farm shop, but the bulk par...

  7. Differential effects of gram-positive and gram-negative bacterial products on morphine induced inhibition of phagocytosis.

    Science.gov (United States)

    Ninkovic, Jana; Jana, Ninkovic; Anand, Vidhu; Vidhu, Anand; Dutta, Raini; Raini, Dutta; Zhang, Li; Saluja, Anuj; Meng, Jingjing; Koodie, Lisa; Lisa, Koodie; Banerjee, Santanu; Santanu, Banerjee; Roy, Sabita; Sabita, Roy

    2016-02-19

    Opioid drug abusers have a greater susceptibility to gram positive (Gram (+)) bacterial infections. However, the mechanism underlying opioid modulation of Gram (+) versus Gram (-) bacterial clearance has not been investigated. In this study, we show that opioid treatment resulted in reduced phagocytosis of Gram (+), when compared to Gram (-) bacteria. We further established that LPS priming of chronic morphine treated macrophages leads to potentiated phagocytosis and killing of both Gram (+) and Gram (-) bacteria in a P-38 MAP kinase dependent signaling pathway. In contrast, LTA priming lead to inhibition of both phagocytosis and bacterial killing. This study demonstrates for the first time the differential effects of TLR4 and TLR2 agonists on morphine induced inhibition of phagocytosis. Our results suggest that the incidence and severity of secondary infections with Gram (+) bacteria would be higher in opioid abusers.

  8. Population vulnerability to biannual cholera outbreaks and associated macro-scale drivers in the Bengal Delta.

    Science.gov (United States)

    Akanda, Ali Shafqat; Jutla, Antarpreet S; Gute, David M; Sack, R Bradley; Alam, Munirul; Huq, Anwar; Colwell, Rita R; Islam, Shafiqul

    2013-11-01

    The highly populated floodplains of the Bengal Delta have a long history of endemic and epidemic cholera outbreaks, both coastal and inland. Previous studies have not addressed the spatio-temporal dynamics of population vulnerability related to the influence of underlying large-scale processes. We analyzed spatial and temporal variability of cholera incidence across six surveillance sites in the Bengal Delta and their association with regional hydroclimatic and environmental drivers. More specifically, we use salinity and flood inundation modeling across the vulnerable districts of Bangladesh to test earlier proposed hypotheses on the role of these environmental variables. Our results show strong influence of seasonal and interannual variability in estuarine salinity on spring outbreaks and inland flooding on fall outbreaks. A large segment of the population in the Bengal Delta floodplains remain vulnerable to these biannual cholera transmission mechanisms that provide ecologic and environmental conditions for outbreaks over large geographic regions.

  9. Geochemical evolution of groundwater in southern Bengal Basin: The example of Rajarhat and adjoining areas, West Bengal, India

    Indian Academy of Sciences (India)

    Paulami Sahu; P K Sikdar; Surajit Chakraborty

    2016-02-01

    Detailed geochemical analysis of groundwater beneath 1223 km2 area in southern Bengal Basin along with statistical analysis on the chemical data was attempted, to develop a better understanding of the geochemical processes that control the groundwater evolution in the deltaic aquifer of the region. Groundwater is categorized into three types: `excellent', `good' and `poor' and seven hydrochemical facies are assigned to three broad types: `fresh', `mixed' and `brackish' waters. The `fresh' water type dominated with sodium indicates active flushing of the aquifer, whereas chloride-rich `brackish' groundwater represents freshening of modified connate water. The `mixed' type groundwater has possibly evolved due to hydraulic mixing of `fresh' and `brackish' waters. Enrichment of major ions in groundwater is due to weathering of feldspathic and ferro-magnesian minerals by percolating water. The groundwater of Rajarhat New Town (RNT) and adjacent areas in the north and southeast is contaminated with arsenic. Current-pumping may induce more arsenic to flow into the aquifers of RNT and Kolkata cities. Future large-scale pumping of groundwater beneath RNT can modify the hydrological system, which may transport arsenic and low quality water from adjacent aquifers to presently unpolluted aquifer.

  10. Arsenic contamination in agricultural soils of Bengal deltaic region of West Bengal and its higher assimilation in monsoon rice.

    Science.gov (United States)

    Shrivastava, Anamika; Barla, Anil; Singh, Surjit; Mandraha, Shivanand; Bose, Sutapa

    2017-02-15

    In the Bengal deltaic region, the shallow groundwater laced with arsenic is used for irrigation frequently and has elevated the soil arsenic in agricultural soil. However, the areas with seasonal flooding reduce arsenic in top layers of the soils. Study shows arsenic accumulation in the deeper soil layers with time in the contaminated agricultural soil (19.40±0.38mg/kg in 0-5cm, 27.17±0.44mg/kg in 5-10cm and 41.24±0.48mg/kg in 10-15cm) in 2013 whereas depletion in 2014 and its buildup in different parts of monsoon rice plant in Nadia, India. Principal Component Analysis and Cluster Analysis were performed, and Enrichment Factor was calculated to identify the sources of arsenic in the soil. Potential Ecological Risk was also calculated to estimate the extent of risk posed by arsenic in soil, along with the potential risk of dietary arsenic exposure. Remarkably, the concentration of arsenic detected in the rice grain showed average value of 1.4mg/kg in 2013 which has increased to 1.6 in 2014, both being above the permissible limit (1mg/kg). These results indicate that monsoon flooding enhances the infiltration of arsenic in the deeper soil layer, which lead to further contamination of shallow groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

  11. Tiger, Bengal and Domestic Cat Embryos Produced by Homospecific and Interspecific Zona-Free Nuclear Transfer.

    Science.gov (United States)

    Moro, L N; Jarazo, J; Buemo, C; Hiriart, M I; Sestelo, A; Salamone, D F

    2015-10-01

    The aim of this study was to evaluate three different cloning strategies in the domestic cat (Felis silvestris) and to use the most efficient to generate wild felid embryos by interspecific cloning (iSCNT) using Bengal (a hybrid formed by the cross of Felis silvestris and Prionailurus bengalensis) and tiger (Panthera tigris) donor cells. In experiment 1, zona-free (ZP-free) cloning resulted in higher fusion and expanded blastocyst rates with respect to zona included cloning techniques that involved fusion or injection of the donor cell. In experiment 2, ZP-free iSCNT and embryo aggregation (2X) were assessed. Division velocity and blastocyst rates were increased by embryo aggregation in the three species. Despite fewer tiger embryos than Bengal and cat embryos reached the blastocyst stage, Tiger 2X group increased the percentage of blastocysts with respect to Tiger 1X group (3.2% vs 12.1%, respectively). Moreover, blastocyst cell number was almost duplicated in aggregated embryos with respect to non-aggregated ones within Bengal and tiger groups (278.3 ± 61.9 vs 516.8 ± 103.6 for Bengal 1X and Bengal 2X groups, respectively; 41 vs 220 ± 60 for Tiger 1X and Tiger 2X groups, respectively). OCT4 analysis also revealed that tiger blastocysts had higher proportion of OCT4-positive cells with respect to Bengal blastocysts and cat intracytoplasmic sperm injection blastocysts. In conclusion, ZP-free cloning has improved the quality of cat embryos with respect to the other cloning techniques evaluated and was successfully applied in iSCNT complemented with embryo aggregation.

  12. Reference intervals and allometric scaling of echocardiographic measurements in Bengal cats.

    Science.gov (United States)

    Scansen, Brian A; Morgan, Kyla L

    2015-12-01

    The Bengal is a relatively new hybrid breed, reported to develop hypertrophic cardiomyopathy. The aim of this study was to determine reference intervals for echocardiographic measurements in Bengal cats. Sixty-six apparently healthy Bengal cats. The study included a retrospective review of echocardiograms from 39 Bengal cats evaluated from March 2004 to June 2012 and reported to be normal by a board-certified cardiologist. An additional 27 cats were enrolled prospectively from June 2012 to June 2013. The effects of sex and body weight on linear cardiac dimensions were evaluated by regression analysis. Reference intervals were determined by the robust method with bootstrapping. Allometric equations scaled to body weight were derived for each echocardiographic variable. Intra- and interobserver variability were evaluated by coefficient of variation from 6 of the prospective studies. Reference intervals were determined from all 66 Bengal cats as no significant differences were observed between the retrospective and prospective data. An effect of sex, separate from body weight, was suggested and unique reference intervals for male and female cats were determined. Body weight was a significant co-variate and 95% prediction intervals for linear dimensions were determined by allometric scaling. Coefficients of variation were less than 10% for 2-dimensional variables and less than 18% for M-mode variables. These data provide reference intervals and weight-based 95% prediction intervals for echocardiographic measurements in the Bengal cat, potentially aiding cardiologists who screen this breed in detecting pathologic variants from normal dimensions. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Trichoderma inoculation augments grain amino acids and mineral nutrients by modulating arsenic speciation and accumulation in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Tripathi, Pratibha; Singh, Poonam C; Mishra, Aradhana; Tripathi, Rudra D; Nautiyal, Chandra S

    2015-07-01

    Trichoderma reesei is an industrially important fungi which also imparts stress tolerance and plant growth promotion in various crops. Arsenic (As) contamination of field soils is one of the challenging problems in agriculture, posing potential threats for both human health and the environment. Plants in association with microbes are a liable method to improve metal tolerance and enhance crop productivity. Chickpea (Cicer arietinum L.), is an important grain legume providing cheap source of protein in semi-arid regions including As affected areas. In this study we report the role of T. reesei NBRI 0716 (NBRI 0716) in supporting chickpea growth and improving soil quality in As simulated conditions. NBRI 0716 modulated the As speciation and its availability to improve grain yield and quality (amino acids and mineral content) in chickpea (C. arietinum L.) plants grown in As spiked soil (100 mg As kg(-1) soil). Arsenic accumulation and speciation results indicate that arsenate [As(V)] was the dominant species in chickpea seeds and rhizosphere soil. The Trichoderma reduced total grain inorganic As (Asi) by 66% and enhanced dimethylarsonic acid (DMA) and monomethylarsinic acid (MMA) content of seed and rhizosphere soil. The results indicate a probable role of NBRI 0716 in As methylation as the possible mechanism for maneuvering As stress in chickpea. Analysis of functional diversity using carbon source utilization (Biolog) showed significant difference in diversity and evenness indices among the soil microbial rhizosphere communities. Microbial diversity loss caused by As were prevented in the presence of Trichoderma NBRI 0716.

  14. Potential of recycling gamma-irradiated sewage sludge for use as a fertilizer: a study on chickpea (Cicer arietinum).

    Science.gov (United States)

    Pandya, G A; Sachidanand, S; Modi, V V

    1989-01-01

    The effects of gamma-irradiated sludge on the growth and yield of chickpea (Cicer arietinum) in pot cultures have been studied. Compared to plants grown only in soil, root length, fresh weight and dry weight of plants grown in soil supplemented with unirradiated sludge were found to be significantly reduced. This inhibition in growth was found to be nullified when plants were grown in soil supplemented with gamma-irradiated sludge, suggesting that gamma radiation induced inactivation of toxic substance(s) in sludge. The protein content of plants grown in soil supplemented with irradiated sludge was also found to be significantly increased compared to those grown with unirradiated or no sludge, after 45 days. There was no significant effect of gamma irradiated sludge on shoot length, total soluble sugars, starch content and yield of chickpea plants. The results obtained suggest that the sludge tested, and obtained from the digester of a conventional domestic sewage treatment plant, is inhibitory to several growth parameters. Gamma irradiation of sewage resulted in removal of this inhibition. This suggests a possibility of beneficial and safe recycling of gamma-irradiated sludge for agricultural uses.

  15. Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers.

    Directory of Open Access Journals (Sweden)

    Manish Roorkiwal

    Full Text Available To estimate genetic diversity within and between 10 interfertile Cicer species (94 genotypes from the primary, secondary and tertiary gene pool, we analysed 5,257 DArT markers and 651 KASPar SNP markers. Based on successful allele calling in the tertiary gene pool, 2,763 DArT and 624 SNP markers that are polymorphic between genotypes from the gene pools were analyzed further. STRUCTURE analyses were consistent with 3 cultivated populations, representing kabuli, desi and pea-shaped seed types, with substantial admixture among these groups, while two wild populations were observed using DArT markers. AMOVA was used to partition variance among hierarchical sets of landraces and wild species at both the geographical and species level, with 61% of the variation found between species, and 39% within species. Molecular variance among the wild species was high (39% compared to the variation present in cultivated material (10%. Observed heterozygosity was higher in wild species than the cultivated species for each linkage group. Our results support the Fertile Crescent both as the center of domestication and diversification of chickpea. The collection used in the present study covers all the three regions of historical chickpea cultivation, with the highest diversity in the Fertile Crescent region. Shared alleles between different gene pools suggest the possibility of gene flow among these species or incomplete lineage sorting and could indicate complicated patterns of divergence and fusion of wild chickpea taxa in the past.

  16. Preliminary results on evaluation of chickpea, Cicer arietinum, genotypes for resistance to the pulse beetle, Callosobruchus maculatus.

    Science.gov (United States)

    Erle, F; Ceylan, F; Erdemir, T; Toker, C

    2009-01-01

    Abstract The chickpea, Cicer arietinum L. (Fabales: Fabaceae), seeds are vulnerable, both in the field and in storage, to attack by seed-beetles. Beetles of the genus Callosobruchus are major storage pests of chickpea crops and cause considerable economic losses. In the present study, a total of 11 chickpea genotypes including five 'kabuli' (Mexican white, Diyar, CA 2969, ILC 8617 and ACC 245) and six 'desi' chickpeas (ICC 1069, ICC 12422, ICC 14336, ICC 4957, ICC 4969 and ICC 7509) were evaluated for resistance to the pulse beetle Callosobruchus maculatus F. (Coleoptera: Bruchidae). Resistance was evaluated by measuring percent damage to seeds. Damage to seeds by C. maculatus was manifested by the round exit holes with the 'flap' of seed coat made by emerging adults. Of the 11 genotypes tested, only one (ICC 4969) exhibited a complete resistance to C. maculatus in both free-choice and no-choice tests; no seed damage was found over the test period. In general, the 'desi' chickpeas were more resistant to C. maculatus than the 'kabuli' chickpeas. Among the tested chickpea genotypes, only ICC 4969 can be used as a source of C. maculatus resistance in breeding programmes that could then be grown in organic cultivation free from pesticides.

  17. Morphological Variability and Races of Fusarium oxysporum f.sp. ciceris Associated with Chickpea (Cicer arietinum Crops

    Directory of Open Access Journals (Sweden)

    Rosa M. Arvayo-Ortiz

    2011-01-01

    Full Text Available Problem statement: Mexico is the third largest producer and exporter of chickpea (Cicer arietinum, with the states of Sinaloa and Sonora accounting for 70 and 20% of Mexicos production, respectively. The most damaging disease affecting this species is caused by Fusarium oxysporum f.sp. Ciceris (FOC, which causes losses of up to 60% in Sonora. The objective of this study was to isolate and characterize the phenotype and genetics of FOC collected from affected chickpea plants in northwestern Mexico and to identify the abiotic factors that allow it to develop. Approach: Sampling focused on affected plants from 12 crops in Sonora and Sinaloa. Based on 355 isolated strains, using Polymerase Chain Reaction (PCR 161 were positive for FOC. Results: Of the 161 strains, 91 were identified as races previously recorded for the Americas: Yellowing (R0 (41%, R1B/C (15% and wilting (R5 (14% and R6 (28% reflecting the symptoms observed in the areas sampled. The other 70 isolates could be nonpathogenic, or could be races yet to be recorded for the Americas. Conclusion: Morphological variability in FOC was high in the main chickpea producing regions in northwestern Mexico and was not a function of the physical and chemical properties of the soil, nor of the geographic location of the cropfields. This is the first report of races of FOC in Mexico.

  18. Biostimulation of soil polluted by 40000 ppm of waste motor oil and phytoremediation with Cicer arietinum and Burkholderia cepacia

    Directory of Open Access Journals (Sweden)

    Meza-Ramírez Janitzi Yunuén

    2016-08-01

    Full Text Available Soil polluted by 40000 ppm of waste residual oil (WRO, is a relative high hydrocarbons mix concentration according to Mexican regulation related with as the well know NOM-138-SEMARNAT/SSA1-2003 (NOM-138. Due to cause lost soil´s fertility, inhibiting microbial life and reducing vegetal production. To NOM-138 the highest limit of hydrocarbons mix allowed in soil is equal to 4400 ppm/kg. Aims of this research were: i Biostimulation of soil polluted by 40000 ppm of WRO by vermicompost and/or bovine compost, ii Phytoremediation by Cicer arietinum and Burkholderia cepacia to reduce WRO at below value compared to highest according to NOM-138. Results showed that biostimulation of soil with bovine compost eliminated WRO at 24000 ppm in 49 days. Then phytoremediation by C. arietinum and B. cepacia decreased WRO at 2760 ppm value below to compare to highest concentration allowed to NOM-138. It´s concluded that biore-mediation of soil impacted by relatively high concentration of WRO, the best strategy was to apply both biostimulation/phytoremediation that separate.

  19. Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea.

    Science.gov (United States)

    Srivastava, Rishi; Bajaj, Deepak; Malik, Ayushi; Singh, Mohar; Parida, Swarup K

    2016-09-29

    The RNA-sequencing followed by de-novo transcriptome assembly identified 11621 genes differentially xpressed in roots vs. shoots of a wild perennial Cicer microphyllum. Comparative analysis of transcriptomes between microphyllum and cultivated desi cv. ICC4958 detected 12772 including 3242 root- and 1639 shoot-specific microphyllum genes with 85% expression validation success rate. Transcriptional reprogramming of microphyllum root-specific genes implicates their possible role in regulating differential natural adaptive characteristics between wild and cultivated chickpea. The transcript-derived 5698 including 282 in-silico polymorphic SSR and 127038 SNP markers annotated at a genome-wide scale exhibited high amplification and polymorphic potential among cultivated (desi and kabuli) and wild accessions suggesting their utility in chickpea genomics-assisted breeding applications. The functional significance of markers was assessed based on their localization in non-synonymous coding and regulatory regions of microphyllum root-specific genes differentially expressed predominantly in ICC 4958 roots under drought stress. A high-density 490 genic SSR- and SNP markers-anchored genetic linkage map identified six major QTLs regulating drought tolerance-related traits, yield per plant and harvest-index in chickpea. The integration of high-resolution QTL mapping with comparative transcriptome profiling delineated five microphyllum root-specific genes with non-synonymous and regulatory SNPs governing drought-responsive yield traits. Multiple potential key regulators and functionally relevant molecular tags delineated can drive translational research and drought tolerance-mediated chickpea genetic enhancement.

  20. Galactinol synthase enzyme activity influences raffinose family oligosaccharides (RFO) accumulation in developing chickpea (Cicer arietinum L.) seeds.

    Science.gov (United States)

    Gangola, Manu P; Jaiswal, Sarita; Kannan, Udhaya; Gaur, Pooran M; Båga, Monica; Chibbar, Ravindra N

    2016-05-01

    To understand raffinose family oligosaccharides (RFO) metabolism in chickpea (Cicer arietinum L.) seeds, RFO accumulation and corresponding biosynthetic enzymes activities were determined during seed development of chickpea genotypes with contrasting RFO concentrations. RFO concentration in mature seeds was found as a facilitator rather than a regulating step of seed germination. In mature seeds, raffinose concentrations ranged from 0.38 to 0.68 and 0.75 to 0.99 g/100 g, whereas stachyose concentrations varied from 0.79 to 1.26 and 1.70 to 1.87 g/100 g indicating significant differences between low and high RFO genotypes, respectively. Chickpea genotypes with high RFO concentration accumulated higher concentrations of myo-inositol and sucrose during early seed developmental stages suggesting that initial substrate concentrations may influence RFO concentration in mature seeds. High RFO genotypes showed about two to three-fold higher activity for all RFO biosynthetic enzymes compared to those with low RFO concentrations. RFO biosynthetic enzymes activities correspond with accumulation of individual RFO during seed development. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Study of phenological and morphological characteristics of chickpea (Cicer arietinum L. cold tolerant genotypes in fall planting

    Directory of Open Access Journals (Sweden)

    samane najib niya

    2009-06-01

    Full Text Available In order to evaluate phenological and morphological characteristics of chickpea (Cicer arietinum L. cold tolerant genotypes, a field trial carried out on 2004-2005 at the experimental field of College of Agriculture, Ferdowsi University of Mashhad. In this study 152 cold tolerant accessions with 4 checks (Karaj12-60-31, ILC482, ILC3279 and FLIP84-48C were evaluated in the Augmented preliminarily design in fall planting (9 October. There were considerable variations among genotypes with each other and with checks about phonological stages (days from sowing to emergence, emergence to flowering and flowering to ripening and morphological characteristics (plant height, number of branches and their length per plant. The differences in all cases were significant (p≤0.05. Vegetative growth period was more than 165 days in 84% of accessions and reproductive growth period was more than 29 days in 87% of them. The height of plant in 86% of accessions was more than 30cm, and total branch length per plant was more than 300cm in 82% of accessions. According to the results and regarding to the remarkable yield of some accessions, there is a suitable possibility for selecting genotypes with suitable agronomical characteristics in order to continue cold tolerance trials in replicated experiments.

  2. Genetic analysis of the role of phytoalexin detoxification in virulence of the fungus Nectria haematococca on chickpea (Cicer arietinum)

    Energy Technology Data Exchange (ETDEWEB)

    Miao, V.P.W.; Vanetten, H.D. (Cornell Univ., Ithaca, NY (United States))

    1992-03-01

    Chickpea (Cicer arietium L.) produces the antimicrobial compounds (phytoalexins) medicarpin and maackiain in response to infection by microorganisms. Nectria haematococca mating population (MP) VI, a fungus pathogenic on chickpea, can metabolize maackiain and medicarpin to less toxic products. These reactions are thought to be detoxification mechanisms in N. haematococca MP VI and required for pathogenesis by this fungus on chickpea. In the present study, these hypotheses were tested by examining the phenotypes of progeny from crosses of the fungus that segregated for genes (Mak genes) controlling phytoalexin metabolism. Mak1 and Mak2, two genes that individually confer the ability to convert maackiain to its 1a-hydroxydienone derivative, were linked to higher tolerance of the phytoalexins and high virulence on chickpea. These results indicate that this metabolic reaction is a mechanism for increased phytoalexin tolerance in the fungus, which thereby allows a higher virulence on chickpea. Mak3, a gene conferring the ability to convert maackiain to its 6a-hydroxypterocarpan derivative, also increased tolerance to maackiain in strains which carried it; however, the contribution of Mak3 to the overall level of pathogenesis could not be evaluated because most progeny from the cross segregating for this gene were low in virulence. Thus, metabolic detoxification of phytoalexins appeared to be necessary, as demonstrated in the Mak1 and Mak2 crosses, but not sufficient by itself, as in the Mak3 cross, for high virulence of N. haematococca MP VI on chickpea.

  3. Genetic variation of a global germplasm collection of chickpea (Cicer arietinum L.) including Italian accessions at risk of genetic erosion.

    Science.gov (United States)

    De Giovanni, C; Pavan, S; Taranto, F; Di Rienzo, V; Miazzi, M M; Marcotrigiano, A R; Mangini, G; Montemurro, C; Ricciardi, L; Lotti, C

    2017-01-01

    Chickpea (Cicer arietinum L.) is one of the most important legumes worldwide. We addressed this study to the genetic characterization of a germplasm collection from main chickpea growing countries. Several Italian traditional landraces at risk of genetic erosion were included in the analysis. Twenty-two simple sequence repeat (SSR) markers, widely used to explore genetic variation in plants, were selected and yielded 218 different alleles. Structure analysis and hierarchical clustering indicated that a model with three distinct subpopulations best fits the data. The composition of two subpopulations, named K1 and K2, broadly reflects the commercial classification of chickpea in the two types desi and kabuli, respectively. The third subpopulation (K3) is composed by both desi and kabuli genotypes. Italian accessions group both in K2 and K3. Interestingly, this study highlights genetic distance between desi genotypes cultivated in Asia and Ethiopia, which respectively represent the chickpea primary and the secondary centres of diversity. Moreover, European desi are closer to the Ethiopian gene pool. Overall, this study will be of importance for chickpea conservation genetics and breeding, which is limited by the poor characterization of germplasm collection.

  4. Salt sensitivity in chickpea (Cicer arietinum L.): ions in reproductive tissues and yield components in contrasting genotypes.

    Science.gov (United States)

    Kotula, Lukasz; Khan, Hammad A; Quealy, John; Turner, Neil C; Vadez, Vincent; Siddique, Kadambot H M; Clode, Peta L; Colmer, Timothy D

    2015-08-01

    The reproductive phase in chickpea (Cicer arietinum L.) is affected by salinity, but little is known about the underlying cause. We investigated whether high concentrations of Na(+) and Cl(-) in the reproductive structures influence reproductive processes. Chickpea genotypes contrasting in tolerance were subjected to 0, 35 or 50 mm NaCl applied to soil in pots. Flower production and abortion, pod number, percentage of empty pods, seed number and size were evaluated. The concentrations of Na(+) , K(+) and Cl(-) were measured in various plant tissues and, using X-ray microanalysis, in specific cells of developing reproductive structures. Genotypic variation in reproductive success measured as seed yield in saline conditions was associated with better maintenance of flower production and higher numbers of filled pods (and thus seed number), whereas seed size decreased in all genotypes. Despite the variation in reproductive success, the accumulation of Na(+) and Cl(-) in the early reproductive tissues of developing pods did not differ between a tolerant (Genesis836) and a sensitive (Rupali) genotype. Similarly, salinity tolerance was not associated with the accumulation of salt ions in leaves at the time of reproduction or in seeds at maturity. © 2015 John Wiley & Sons Ltd.

  5. DIRECT IN VITRO SHOOTS PROLIFERATION OF CHICK PEA (CICER ARIETINUM L. FROM SHOOT TIP EXPLANTS INDUCED BY THIDIAZURON

    Directory of Open Access Journals (Sweden)

    Shaheena Parveen

    2012-01-01

    Full Text Available A rapid, simple and efficient protocol for direct in vitro multiple shoot induction and plantlet regeneration was achieved from shoot tip explants of Cicer arietinum. The shoot tips were cultured on MS medium fortified with Thidiazuron (TDZ (1.0-7.0 mg/L for multiple shoot induction. Multiple shoots proliferation was best observed at 3.0 mg/L TDZ from the shoot tip explants within three weeks of culture. Shoot number per explant ranged between 2 and 10. Individual shoots were aseptically excised and sub cultured in the same media for shoot elongation. The elongated shoots were transferred to Indole Butyric Acid (IBA (1.0mg/L–5.0mg/L for root induction. Rooting was observed within two weeks of culture. Rooted plantlets were successfully hardened under culture conditions and subsequently established in the field conditions. The recorded survival rate of the plants was 86%. Plants looked healthy with no visually detectable phenotypic variations.

  6. Chickpea (Cicer arietinum L. responds to inoculation with Azotobacter vineladii and Burkholderia cepacia at reduced dose of nitrogen fertilizer

    Directory of Open Access Journals (Sweden)

    Juan Manuel Sánchez-Yáñez

    2014-09-01

    Full Text Available Chickpea (Cicer arietinum L. crop demands nitrogen fertilizer (NF applied in excess caused lost soil fertility and environmental pollution. An alternative for solving this problem are: to reduce and to optimize NF in chickpea using inoculants based on plant growth promoting bacteria (PGPB genus. Thus, the aim of this study was to analyze the response of chickpea to inoculation with Azotobacter vinelandii and Burkholderia cepacia at 50% reduced dose of NF. These PGPB were inoculated chickpea under an experimental design of randomized blocks. The response variables to measure the effect of PGPB on the legume were: the percent of germination, shoot and root phenotyping: plant height, root length and biomass: fresh and dry weight of shoot and root. Experimental data were analyzed by ANOVA and Tukey test. Results showed that a positive respond of chickpea to both PGPB on its germination as well as at seeding and flowering where chickpea had 0.82g total dry weight (TDW of this value was statistically different and significant compared to chickpea treated by NF 100% not inoculated used as relative control (RC with 0.71g TDW. This data suggests that chickpea optimized NF reduced dose by synergistic interaction of both genera PGPB in its root system. Which could to avoid in part soil lost fertility and environmental pollution for applying NF in excess.

  7. Exposure of seeds to static magnetic field enhances germination and early growth characteristics in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Vashisth, Ananta; Nagarajan, Shantha

    2008-10-01

    Seeds of chickpea (Cicer arietinum L.) were exposed in batches to static magnetic fields of strength from 0 to 250 mT in steps of 50 mT for 1-4 h in steps of 1 h for all fields. Results showed that magnetic field application enhanced seed performance in terms of laboratory germination, speed of germination, seedling length and seedling dry weight significantly compared to unexposed control. However, the response varied with field strength and duration of exposure without any particular trend. Among the various combinations of field strength and duration, 50 mT for 2 h, 100 mT for 1 h and 150 mT for 2 h exposures gave best results. Exposure of seeds to these three magnetic fields improved seed coat membrane integrity as it reduced the electrical conductivity of seed leachate. In soil, seeds exposed to these three treatments produced significantly increased seedling dry weights of 1-month-old plants. The root characteristics of the plants showed dramatic increase in root length, root surface area and root volume. The improved functional root parameters suggest that magnetically treated chickpea seeds may perform better under rainfed (un-irrigated) conditions where there is a restrictive soil moisture regime.

  8. Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea

    Science.gov (United States)

    Srivastava, Rishi; Bajaj, Deepak; Malik, Ayushi; Singh, Mohar; Parida, Swarup K.

    2016-01-01

    The RNA-sequencing followed by de-novo transcriptome assembly identified 11621 genes differentially xpressed in roots vs. shoots of a wild perennial Cicer microphyllum. Comparative analysis of transcriptomes between microphyllum and cultivated desi cv. ICC4958 detected 12772 including 3242 root- and 1639 shoot-specific microphyllum genes with 85% expression validation success rate. Transcriptional reprogramming of microphyllum root-specific genes implicates their possible role in regulating differential natural adaptive characteristics between wild and cultivated chickpea. The transcript-derived 5698 including 282 in-silico polymorphic SSR and 127038 SNP markers annotated at a genome-wide scale exhibited high amplification and polymorphic potential among cultivated (desi and kabuli) and wild accessions suggesting their utility in chickpea genomics-assisted breeding applications. The functional significance of markers was assessed based on their localization in non-synonymous coding and regulatory regions of microphyllum root-specific genes differentially expressed predominantly in ICC 4958 roots under drought stress. A high-density 490 genic SSR- and SNP markers-anchored genetic linkage map identified six major QTLs regulating drought tolerance-related traits, yield per plant and harvest-index in chickpea. The integration of high-resolution QTL mapping with comparative transcriptome profiling delineated five microphyllum root-specific genes with non-synonymous and regulatory SNPs governing drought-responsive yield traits. Multiple potential key regulators and functionally relevant molecular tags delineated can drive translational research and drought tolerance-mediated chickpea genetic enhancement. PMID:27680662

  9. Development of a phosphomannose isomerase-based Agrobacterium-mediated transformation system for chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Patil, Gunvant; Deokar, Amit; Jain, P K; Thengane, R J; Srinivasan, R

    2009-11-01

    To develop an alternative genetic transformation system that is not dependent on an antibiotic selection strategy, the phosphomannose isomerase gene (pmi) system was evaluated for producing transgenic plants of chickpea (Cicer arietinum L.). A shoot morphogenesis protocol based on the thidiazuron (TDZ)-induced shoot morphogenesis system was combined with Agrobacterium-mediated transformation of the pmi gene and selection of transgenic plants on mannose. Embryo axis explants of chickpea cv. C-235 were grown on a TDZ-supplemented medium for shoot proliferation. Embryo axis explants from which the first and second flush of shoots were removed were transformed using Agrobacterium carrying the pmi gene, and emerging shoots were allowed to regenerate on a zeatin-supplemented medium with an initial selection pressure of 20 g l(-1) mannose. Rooting was induced in the selected shoots on an indole-3-butyric acid (IBA)-supplemented medium with a selection pressure of 15 g l(-1) mannose. PCR with marker gene-specific primers and chlorophenol red (CPR) assay of the shoots indicated that shoots had been transformed. RT-PCR and Southern analysis of selected regenerated plants further confirmed integration of the transgene into the chickpea genome. These positive results suggest that the pmi/mannose selection system can be used to produce transgenic plants of chickpea that are free from antibiotic resistance marker genes.

  10. Prognostic factors and monomicrobial necrotizing fasciitis: gram-positive versus gram-negative pathogens

    Directory of Open Access Journals (Sweden)

    Hsu Wei-Hsiu

    2011-01-01

    Full Text Available Abstract Background Monomicrobial necrotizing fasciitis is rapidly progressive and life-threatening. This study was undertaken to ascertain whether the clinical presentation and outcome for patients with this disease differ for those infected with a gram-positive as compared to gram-negative pathogen. Methods Forty-six patients with monomicrobial necrotizing fasciitis were examined retrospectively from November 2002 to January 2008. All patients received adequate broad-spectrum antibiotic therapy, aggressive resuscitation, prompt radical debridement and adjuvant hyperbaric oxygen therapy. Eleven patients were infected with a gram-positive pathogen (Group 1 and 35 patients with a gram-negative pathogen (Group 2. Results Group 2 was characterized by a higher incidence of hemorrhagic bullae and septic shock, higher APACHE II scores at 24 h post-admission, a higher rate of thrombocytopenia, and a higher prevalence of chronic liver dysfunction. Gouty arthritis was more prevalent in Group 1. For non-survivors, the incidences of chronic liver dysfunction, chronic renal failure and thrombocytopenia were higher in comparison with those for survivors. Lower level of serum albumin was also demonstrated in the non-survivors as compared to those in survivors. Conclusions Pre-existing chronic liver dysfunction, chronic renal failure, thrombocytopenia and hypoalbuminemia, and post-operative dependence on mechanical ventilation represent poor prognostic factors in monomicrobial necrotizing fasciitis. Patients with gram-negative monobacterial necrotizing fasciitis present with more fulminant sepsis.

  11. Orator perfectus: la réplica de San Agustín al rétor ideal de Cicerón

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    Andrés Covarrubias Correa

    2007-01-01

    Full Text Available En este artículo muestro las semejanzas y disimilitudes en la caracterización del orador perfecto bajo las perspectivas de Cicerón y San Agustín, sobre todo desde el punto de vista ético. Mientras en Cicerón se pone en evidencia la dificultad de encontrar un modelo de orador ideal, producto de su preferencia por articular el arte retórico desde la retórica jurídica y su desconfianza en la posibilidad de encontrar la verdad en el marco de la palabra persuasiva, San Agustín opta por el modelo que debe imperar en el buen orador eclesiástico, que se establece a partir de los textos de las Sagradas Escrituras y de quienes los escribieron, donde la verdad está garantizada. Para este análisis me centro en el Orator ad M. Brutum de Cicerón y en el libro IV del De doctrina Christiana del filósofo de TagasteIn this article the author shows the similarities and dissimilarities in the characterization of the perfect orator from the perspectives of Cicero and St. Augustine, above all from the ethical point of view. While in Cicero the difficulty of finding a model for the ideal orator is evident, product of his preference for articulating rhetorical art from juridical rhetoric and his distrust of the possibility of finding the truth within the framework of the persuasive word, St. Augustine opts for the model that must predominate in the ecclesiastical orator, established from the texts of Sacred Scripture and from those who wrote them, where truth is guaranteed. For this analysis, the author focuses on Cicero's Orator ad M. Brutum and on Book IV of De doctrina Christiana of the philosopher of Tagaste

  12. DETECTION OF CLASSICAL SWINE FEVER VIRUS BY RT-PCR IN WEST BENGAL, INDIA

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    Sumit Chowdhury

    2016-12-01

    Full Text Available Classical swine fever is a deadly disease of swine, caused by a RNA virus. The present study has identified presence of the classical swine fever virus (CSFV in pigs of West Bengal by one step reverse transcriptase PCR (RT-PCR performed using 5’ NTR specific primers. Internal organs from clinically affected pigs were examined from three districts of West Bengal. RT-PCT has identified presence of CSFV in all the tissues examined confirming presence of CSFV in different parts of the state.

  13. Formation of the southern Bay of Bengal cold pool

    Science.gov (United States)

    Das, Umasankar; Vinayachandran, P. N.; Behara, Ambica

    2016-09-01

    A pool of relatively cooler water, called here as the southern Bay of Bengal cold pool, exists around Sri Lanka and southern tip of India during the summer monsoon. This cold pool is enveloped by the larger Indian Ocean warm pool and is believed to affect the intraseasonal variations of summer monsoon rainfall. In this study, we have investigated the mechanisms responsible for the formation of the cold pool using a combination of both satellite data sets and a general circulation model of the Indian Ocean. Sea surface temperature (SST) within the cold pool, after the steady increase during the February-April period, decreases first during a pre-monsoon spell in April and then with the monsoon onset during May. The onset cooling is stronger (~1.8°C) than the pre-monsoon cooling (~0.8°C) and culminates in the formation of the cold pool. Analysis of the model temperature equation shows that SST decrease during both events is primarily due to a decrease in incoming solar radiation and an increase in latent heat loss. These changes in the net heat flux are brought about by the arrival of cloud bands above the cold pool during both periods. During the pre-monsoon period, a cloud band originates in the western equatorial Indian Ocean and subsequently arrives above the cold pool. Similarly, during the monsoon onset, a band of clouds originating in the eastern equatorial Indian Ocean comes over the cold pool region. A lead-lag correlation calculation between daily SST and rainfall anomalies suggest that cooling in SST occurs in response to rainfall events with a lag of 5 days. These sequence of events occur every year with certain amount of interannual variability.

  14. Respuesta del garbanzo (Cicer arietinum L.) a la inoculación con Azotobacter vineladii y Burkholderia cepacia a dosis reducida de fertilizante nitrogenado

    OpenAIRE

    Juan Manuel Sánchez-Yáñez; Javier Villegas Moreno; Gerard Roland Vela-Muzquiz; Liliana Marquez-Benavides

    2014-01-01

    ResumenEl cultivo de garbanzo “Cicer arietinumL.” demanda fertilizante nitrogenado (FN), que aplicado en excesoprovoca pérdida de fertilidad del suelo y contaminación ambiental. Una alternativa para este problema es lareducción y optimización de la dosis de FN, con inoculantes a base de bacteriaspromotoras de crecimientovegetal (BPCV).Así, el objetivo de este trabajo fue analizar la respuesta del garbanzo a la inoculación conAzotobactervinelandiiyBurkholderiacepaciaa la dosis 50% del FN. Para...

  15. Quorum sensing in gram-negative bacteria

    DEFF Research Database (Denmark)

    Wu, H.; Song, Z.J.; Høiby, N.

    2004-01-01

    Bacteria can communicate with each other by means of signal molecules to coordinate the behavior of the entire community, and the mechanism is referred to as quorum sensing (QS). Signal systems enable bacteria to sense the size of their densities by monitoring the concentration of the signal...... molecules. Among Gram-negative bacteria N-acyl-L-homoserine lactone (acyl-HSL)-dependent quorum sensing systems are particularly widespread. These systems are used to coordinate expression of phenotypes that are fundamental to the interaction of bacteria with each other and with their environment...

  16. Regulatory mechanisms differ in UMP kinases from gram-negative and gram-positive bacteria.

    Science.gov (United States)

    Evrin, Cécile; Straut, Monica; Slavova-Azmanova, Neli; Bucurenci, Nadia; Onu, Adrian; Assairi, Liliane; Ionescu, Mihaela; Palibroda, Nicolae; Bârzu, Octavian; Gilles, Anne-Marie

    2007-03-09

    In this work, we examined the regulation by GTP and UTP of the UMP kinases from eight bacterial species. The enzyme from Gram-positive organisms exhibited cooperative kinetics with ATP as substrate. GTP decreased this cooperativity and increased the affinity for ATP. UTP had the opposite effect, as it decreased the enzyme affinity for ATP. The nucleotide analogs 5-bromo-UTP and 5-iodo-UTP were 5-10 times stronger inhibitors than the parent compound. On the other hand, UMP kinases from the Gram-negative organisms did not show cooperativity in substrate binding and catalysis. Activation by GTP resulted mainly from the reversal of inhibition caused by excess UMP, and inhibition by UTP was accompanied by a strong increase in the apparent K(m) for UMP. Altogether, these results indicate that, depending on the bacteria considered, GTP and UTP interact with different enzyme recognition sites. In Gram-positive bacteria, GTP and UTP bind to a single site or largely overlapping sites, shifting the T R equilibrium to either the R or T form, a scenario corresponding to almost all regulatory proteins, commonly called K systems. In Gram-negative organisms, the GTP-binding site corresponds to the unique allosteric site of the Gram-positive bacteria. In contrast, UTP interacts cooperatively with a site that overlaps the catalytic center, i.e. the UMP-binding site and part of the ATP-binding site. These characteristics make UTP an original regulator of UMP kinases from Gram-negative organisms, beyond the common scheme of allosteric control.

  17. Efeito da extrusão termoplástica no teor de usina disponível da farinha desengordurada de grão-de-bico (Cicer arietinum, L.)

    OpenAIRE

    Valim, Maria Filomena Claret Fernandes de Aguiar [UNESP; José Paschoal BATISTUTI

    2000-01-01

    The aim of this research was to evaluate lysine availability of chickpea (Cicer arietinum, L.) flour submitted to thermoplastic extrusion at three feed moisture levels (13%, 18% and 27%). It was verified that extrusion treatments reduced available lysine by 58% and 55% at 13% and 18% feed moisture levels. The major lysine loss, 71%, was verified at 27% feed moisture level.

  18. Textualidad y gramática argumentativa

    Directory of Open Access Journals (Sweden)

    RAÚL FIRACATIVE-RUIZ

    2014-01-01

    Full Text Available La argumentación es un modo de organizar el discurso, cuya orientación se da para lograr el convencimiento del otro. El presente artículo acoge este precepto para abordar la propuesta argumentativa del autor italiano Vincenzo Lo Cascio desde la noción de textualidad . Gramática argumentativa es el nombre dado a esta apuesta teórica y surge de las ideas de la Nueva Retórica de Perelman. Lo Cascio propone la existencia de categorías sintácticas finitas, denominadas reglas categoriales e indicadores de fuerza , las cuales permiten orientar la información de los enunciados y analizar multiplicidad de discursos; por ello, es una teoría que sigue la línea de la sintaxis generativa de Noam Chomsky. El artículo plantea la necesidad de reconocer, desde la Gramática argumentativa, el potencial enunciativo de la palabra en situaciones comunicativas cotidianas, donde es preciso que los enunciadores sean conscientes del uso que hacen de la palabra.

  19. Earth Global Reference Atmospheric Model 2007 (Earth-GRAM07)

    Science.gov (United States)

    Leslie, Fred W.; Justus, C. G.

    2008-01-01

    GRAM is a Fortran software package that can run on a variety of platforms including PC's. GRAM provides values of atmospheric quantities such as temperature, pressure, density, winds, constituents, etc. GRAM99 covers all global locations, all months, and heights from the surface to approx. 1000 km). Dispersions (perturbations) of these parameters are also provided and are spatially and temporally correlated. GRAM can be run in a stand-alone mode or called as a subroutine from a trajectory program. GRAM07 is diagnostic, not prognostic (i.e., it describes the atmosphere, but it does not forecast). The source code is distributed free-of-charge to eligible recipients.

  20. The Political Economy of English Education in Muslim Bengal: 1871-1912.

    Science.gov (United States)

    Rahim, Aminur

    1992-01-01

    Examines explanations for lack of progress by Muslims in English education in East Bengal, colonial British India (now Bangladesh). Argues that urban-based, elitist English education failed to provide opportunities to rural Muslim farmers, and that, after the British formulated educational policies meeting Muslim needs, that community responded…

  1. Trace metal concentrations in marine zooplankton from the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Rejomon, G.; Balachandran, K.K.; Nair, M.; Joseph, T.

    , Ni, Cu, Zn, Cd and Pb in zooplankton from the Bay of Bengal indicates that it is slightly enriched in coastal samples than offshore samples. The heavy river discharge in the east coast of India might be related to the increased metal bio...

  2. Variability of the oceanic boundary layer characteristics in the Northern Bay of Bengal during MONTBLEX-90

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Sarma, Y.V.B.; Rao, D.P.

    Variability of the ocean surface boundary layer characteristics on daily time-scale is studied utilizing the 3-hourly hydrographic data collected at a stationary location (20 degrees N, 89 degrees E) in the Bay of Bengal during August (18th-31st...

  3. T-S variability and volume transport in the central Bay of Bengal during southwest monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Gopalakrishna, V.V.; Pednekar, S.M.; Murty, V.S.N.

    The variability of temperature and salinity along 11 degrees N and 12 degrees N sections in the Bay of Bengal during southwest monsoon months (July-September) was found to be large in the upper 200 m west of 83 degrees E and east of 90 degrees E...

  4. Diurnal variability of surface fluxes at an oceanic station in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, Y.V.B.; Rao, D.P.

    Diurnal variability of the surface fluxes and ocean heat content was studied using the time-series data on marine surface meteorological parameters and upper ocean temperature collected at an oceanic station in the Bay of Bengal during 1st to 8th...

  5. Seasonal occurrence of unique sediment plume in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sridhar, P.N.; Ali, M.M.; Vethamony, P.; Babu, M.T.; Ramana, I.V.; Jayakumar, S.

    the Bay of Bengal whose movement is controlled by prevailing currents. The KGB is located in the central part of the east coast of India between 16 degrees 43 minutes, 17 degrees 00 minutes N and 82 degrees 15 minutes, 82 degrees 22 minutes E (Figure 1a...

  6. Determination of dynamic heights in the Bay of Bengal from XBT profiles and climatological salinities

    Digital Repository Service at National Institute of Oceanography (India)

    Ali, M.M.; Gopalakrishna, V.V.; Araligidad, N.; Reddy, G.V.; Salgaonkar, G.

    these voluminous temperature measurements from XBT observations in the computation of DHs, temperature/salinity relations were developed in many oceanic regions. Since such an exercise cannot be carried out in the Bay of Bengal due to the absence of adequate CTD...

  7. Lithosphere structure and upper mantle characteristics below the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, G.S.; Radhakrishna, M.; Sreejith, K.M.; Krishna, K.S.; Bull, J.M.

    ) and by the loading of ca. 20-km of sediments of the Bengal Fan. Here, we present the results of a combined spatial and spectral domain analysis of residual geoid, bathymetry and gravity data constrained by seismic reflection and refraction data. Self-consistent geoid...

  8. Studies on the planktonic Decapoda and Stomatopoda (Crustacea) from the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Paulinose, V.T.; Nair, V.R.; Goswami, S.C.

    Abundance and distribution of decapods and stomatopods were studied, based on 90 samples collected from the western Bay of Bengal (Lat. 09 degrees 58' and 20 degrees 50'N and long. 80 degrees 00'E) between 24 August and 2 October, 1976. The decapod...

  9. Chemical absorption of acoustic energy due to an eddy in the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    PrasannaKumar, S.; Navelkar, G.S.; Murty, T.V.R.; Somayajulu, Y.K.; Murty, C.S.

    Acoustic energy losses due to chemical absorption, within the western Bay of Bengal, in the presence of a subsurface meso-scale cold core eddy has been analysed. These estimates, for two different frequencies - 400 Hz and 10 kHz, find applications...

  10. Particle fluxes in the Bay of Bengal measurEd. by sediment traps

    Digital Repository Service at National Institute of Oceanography (India)

    Ramaswamy, V.; Parthiban, G.

    Particle fluxes were measured between October, 1987 and March, 1988 using six automated time series sediment traps at three locations in the northern, central and southern Bay of Bengal. Particle fluxes varied between 16.8 and 345 mg m/2 day/1...

  11. Seasonal wave characteristics of the Arabian Sea and the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Vijayarajan, P.K.; Varkey, M.J.; Joseph, M.X.

    Wave data reported in the Indian Daily Weather Reports for the period 1960-64 have been used to evaluate seasonal wave characteristics for each 2-degree square areas of the Arabian Sea and the Bay of Bengal. These results are presented in the form...

  12. Distribution and retention of rose bengal and disulphonated aluminium phthalocyanine: a comparative study in unicellular eukaryote.

    Science.gov (United States)

    Croce, A C; Wyroba, E; Bottiroli, G

    1992-12-01

    Enhanced video-fluorescence microscopy and microspectrofluorometry were used to characterize the internalization, distribution and retention of two photosensitizers, rose bengal--a xanthene dye--and disulphonated aluminium phthalocyanine in eukaryote Paramecium aurelia. Rose bengal, because of its anionic nature, cannot diffuse across the cell membrane and accumulates there preferentially. In a drug-free medium the membrane fluorescence disappears after a few minutes. Complexation of rose bengal with low density lipoproteins gives rise to a different fluorescence pattern, where, in addition to membrane localization and diffuse cytoplasmic fluorescence, highly fluorescent endosomes are observed, which persisted for at least 1 h after drug treatment. Disulphonated aluminium phthalocyanine, on the contrary, seems to be directly internalized through an endocytotic process leading to the appearance of fluorescent endosomes, exhibiting a long persistence, together with cytoplasmic diffuse fluorescence. The presence of low density lipoproteins does not modify the internalization of the drug significantly, because of the very low yield of the complexation reaction. The potential of rose bengal as a photosensitizer for photodynamic therapy is discussed.

  13. Structure of the oceanic mixed layer in western Bay of Bengal during MONEX

    Digital Repository Service at National Institute of Oceanography (India)

    Anto, A.F.; Somayajulu, Y.K.

    Based on the hourly BT and six hourly CSTD data, collected from two stations in the western Bay of Bengal during July 1979, the diurnal variations of temperature in the oceanic mixed layer (OML) were analysed as a function of the prevailing surface...

  14. Sighting of Elymnias panthera (Lepidoptera: Nymphalidae: Satyrinae in West Bengal, eastern India

    Directory of Open Access Journals (Sweden)

    A.B. Roy

    2010-01-01

    Full Text Available The Tawny Palmfly butterfly, Elymnias panthera (Lepidoptera: Nymphalidae: Satyrinae, is a Malayan species that is also known from the Nicobar Islands. Here we report sighting of E. panthera from the Bethuadahari Wildlife Sanctuary in West Bengal, eastern India. This is the first sighting of the species from mainland India, and is a possible range extension of the species into northeastern India.

  15. Dissolved petroleum hydrocarbons along the oil tanker route in the southern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Topgi, R.S.; Noronha, R.J.; Fondekar, S.P.; SenGupta, R.

    Concentrations of dissolved petroleum hydrocarbons during 3 cruises (Nos. 51, 66 and 68) of R V Gaveshani, along the oil tanker route, in the southern Bay of Bengal at 0, 10 and 20 m were 19.95 + or - 3.38, 16.78 + or - 2.53 and 13.45 + or - 2.17 mu...

  16. Distribution of calanoid copepods in the Arabian sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Stephen, R.

    . Numerical abundance was high in the shelf stations. Secondary production considered in terms of copepod density showed the ratio 2:1 between the Arabian Sea and Bay of Bengal. The water column from the top layer of thermocline to surface was dominated...

  17. Acoustic propagation within a surface duct in the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    PrasannaKumar, S.; Navelkar, G.S.; Murty, T.V.R.; Murty, C.S.

    Sound speed structure forms a surface duct in the upper 50 m layer in the western Bay of Bengal during late July. A range-dependent acoustic ray computation shows that some rays emanating from a source within the upper 30 m, get trapped within...

  18. Iodate in inshore and offshore waters of Central Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.

    Biological stripping of iodate in the surface waters is noticed in the inshore and offshore waters of Bay of Bengal. A good correlation is observed between iodate and phosphate and nitrate and the molar ratios determined being NO3: PO4: IO3 = 88...

  19. Transportation scenario of Black Bengal goats in Gabtoli and Sirajganj markets of Bangladesh

    Directory of Open Access Journals (Sweden)

    Mohammed Nazmus sakib

    2016-03-01

    Conclusion: From this study it is concluded that Black Bengal goats became physically unfit during long time transportation although majority of the farmers took proper management practices. Therefore, changes in behavioral responses might be alleviated through creating awareness to animal raiser as well transporter. [J Adv Vet Anim Res 2016; 3(1.000: 38-44

  20. Determinants of Rural Industrial Entrepreneurship of Farmers in West Bengal : A Structural Equations Approach

    NARCIS (Netherlands)

    Folmer, Henk; Dutta, Subrata; Oud, Han

    2010-01-01

    This article presents a structural equations model of rural industrial entrepreneurship (RIE) among farmers in the Bardhaman district, West Bengal, India. It identifies the determinants of RIE but also analyzes impacts of RIE on its endogenous determinants. Age, education, marital status, number of

  1. Distribution and seasonal abundance of carangid larvae in the Arabian sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Peter, K.J.; Balachandran, T.

    Carangid larvae were recorded from 8.8% of the International Indian Ocean Expedition (IIOE) stations in the Arabian Sea and 13.2% in the Bay of Bengal. Their total contribution was 1.1% of the total larvae collected. The highest number of larvae...

  2. Sighting of Elymnias panthera (Lepidoptera: Nymphalidae: Satyrinae in West Bengal, eastern India

    Directory of Open Access Journals (Sweden)

    A.B. Roy

    2010-01-01

    Full Text Available The Tawny Palmfly butterfly, Elymnias panthera (Lepidoptera: Nymphalidae: Satyrinae, is a Malayan species that is also known from the Nicobar Islands. Here we report sighting of E. panthera from the Bethuadahari Wildlife Sanctuary in West Bengal, eastern India. This is the first sighting of the species from mainland India, and is a possible range extension of the species into northeastern India.

  3. Curstal evolution and sedimentation history of the Bay of Bengal since the cretaceous

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, D.G.; Krishna, K.S.; Sar, D.

    on three latitudinal profiles) in the Bay of Bengal. The trend of the fracture zones, the locations of the magnetic chron 34, and the Cretaceous Magnetic Quiet Zone suggest that Greater India separated from Antarctica after a period of transform motion...

  4. The Sex Education Debates: Teaching "Life Style" in West Bengal, India

    Science.gov (United States)

    Chakravarti, Paromita

    2011-01-01

    This paper examines the recent controversies surrounding the decision to introduce sex education in secondary schools in India to combat the rapid spread of HIV and AIDS in the country. While 11 Indian states have banned it, the Left-ruled state of West Bengal has designed a teachers' manual to impart sex education. However, a close analysis of…

  5. Atypical ferromanganese micronodules from middle fan-valley system, Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Chauhan, O.S.; Gujar, A.R.; Rao, Ch.M.

    Ferromanganese micronodules having botryoidal and spheroidal morphogroups have been observed over a 0.22 million km@u2@@ area from the middle fan region of the Bay of Bengal. The bulk micronodules have 26.26% Mn, 1.02% Fe, 1.82% Ca, 0.12% Ni, 0...

  6. Meso-scale atmospheric events promote phytoplankton blooms in the coastal Bay of Bengal

    Indian Academy of Sciences (India)

    K Maneesha; V V S S Sarma; N P C Reddy; Y Sadhuram; T V Ramana Murty; V V Sarma; M Dileep Kumar

    2011-08-01

    The Bay of Bengal is considered to be a low productive region compared to the Arabian Sea based on conventional seasonal observations. Such seasonal observations are not representative of a calendar year since the conventional approach might miss episodic high productive events associated with extreme atmospheric processes. We examined here the influence of extreme atmospheric events, such as heavy rainfall and cyclone Sidr, on phytoplankton biomass in the western Bay of Bengal using both in situ time-series observations and satellite derived Chlorophyll (Chl ) and sea surface temperature (SST). Supply of nutrients through the runoff driven by episodic heavy rainfall (234 mm) on 4–5 October 2007 caused an increase in Chl concentration by four times than the previous in the coastal Bay was observed within two weeks. Similar increase in Chl , by 3 to 10 times, was observed on the right side of the cyclone Sidr track in the central Bay of Bengal after the cyclone Sidr. These two episodic events caused phytoplankton blooms in the western Bay of Bengal which enhanced ∼40% of fishery production during October–December 2007 compared to that in the same period in 2006.

  7. Seasonal cyclogenesis and the role of near-surface stratified layer in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Sarma, M.S.S.; Tilvi, V.

    The role of the near-surface stratified layer developed due to the spread of low salinity waters under the influence of freshwater influx on the cyclogenesis over the Bay of Bengal is addressed. The seasonal variation of the Effective Oceanic Layer...

  8. Hydrography and circulation of the Bay of Bengal during early winter, 1983

    Digital Repository Service at National Institute of Oceanography (India)

    Suryanarayana, A.; Murty, V.S.N.; Rao, D.P.

    . K. Dns (1968) On the level of least motion and the circulation in the upper layers of the Bay of Bengal. Bulletin of National Institute of Oceanography. 38.30 t-307. WYaTKI K. (1971) Oceanographic Atlas of the International Indian Ocean Expedition...

  9. Bioengineered nisin A derivatives with enhanced activity against both Gram positive and Gram negative pathogens.

    Directory of Open Access Journals (Sweden)

    Des Field

    Full Text Available Nisin is a bacteriocin widely utilized in more than 50 countries as a safe and natural antibacterial food preservative. It is the most extensively studied bacteriocin, having undergone decades of bioengineering with a view to improving function and physicochemical properties. The discovery of novel nisin variants with enhanced activity against clinical and foodborne pathogens has recently been described. We screened a randomized bank of nisin A producers and identified a variant with a serine to glycine change at position 29 (S29G, with enhanced efficacy against S. aureus SA113. Using a site-saturation mutagenesis approach we generated three more derivatives (S29A, S29D and S29E with enhanced activity against a range of Gram positive drug resistant clinical, veterinary and food pathogens. In addition, a number of the nisin S29 derivatives displayed superior antimicrobial activity to nisin A when assessed against a range of Gram negative food-associated pathogens, including E. coli, Salmonella enterica serovar Typhimurium and Cronobacter sakazakii. This is the first report of derivatives of nisin, or indeed any lantibiotic, with enhanced antimicrobial activity against both Gram positive and Gram negative bacteria.

  10. Mechanistic antimicrobial approach of extracellularly synthesized silver nanoparticles against gram positive and gram negative bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Tamboli, Dhawal P.; Lee, Dae Sung, E-mail: daesung@knu.ac.kr

    2013-09-15

    Highlights: • Bacterial extracelluar enzymes stabilized the silver nanoparticles (AgNPs). • AgNPs formation was characterized by analytical techniques such as UV–vis, TEM, and FTIR. • AgNPs showed obvious antimicrobial activity against both gram positive and gram negative microorganisms. • A mechanism of AgNPs’ antimicrobial activity was proposed. -- Abstract: The development of eco-friendly and reliable processes for the synthesis of nanoparticles has attracted considerable interest in nanotechnology. In this study, an extracellular enzyme system of a newly isolated microorganism, Exiguobacterium sp. KNU1, was used for the reduction of AgNO{sub 3} solutions to silver nanoparticles (AgNPs). The extracellularly biosynthesized AgNPs were characterized by UV–vis spectroscopy, Fourier transform infra-red spectroscopy and transmission electron microscopy. The AgNPs were approximately 30 nm (range 5–50 nm) in size, well-dispersed and spherical. The AgNPs were evaluated for their antimicrobial effects on different gram negative and gram positive bacteria using the minimum inhibitory concentration method. Reasonable antimicrobial activity against Salmonella typhimurium, Pseudomonas aeruginosa, Escherichia coli and Staphylococcus aureus was observed. The morphological changes occurred in all the microorganisms tested. In particular, E. coli exhibited DNA fragmentation after being treated with the AgNPs. Finally, the mechanism for their bactericidal activity was proposed according to the results of scanning electron microscopy and single cell gel electrophoresis.

  11. Active faulting in Raghunandan Anticline, NE Bengal Basin, implications for future earthquake hazards

    Science.gov (United States)

    Ahsan, A.; Kali, E.; Coudurier Curveur, A.; van der Woerd, J.; Tapponnier, P.; Alam, A. K.; Ildefonso, S.; Banerjee, P.; Dorbath, C.

    2015-12-01

    The Bengal basin is situated in a complex tectonic zone where the Indian-Eurasian Plates and Indian-Burmese Plates are colliding. This region is known for some of the largest intra-continental seismic events of the last 500 years, the 1548 Bengal earthquake of magnitude M>8?, the 1762 Arakan earthquake of magnitude M>8?, the 1897 Shillong earthquakes of magnitude Ms 8.7, the 1918 Srimangal earthquake of magnitude Ms 7.6 and the 1950 Assam earthquake of magnitude Mw 8.6. The source faults of these events and whether these large earthquakes occurred on faults that reached the surface or reminded blind remain controversial. The Bengal basin still needs to be better understood in terms of active faulting and seismicity. The Eastern boundary of Bengal basin is marked by numerous NS trending folds of the Indo-Burma Ranges. We focused on the Raghunandan Anticline, NE Bengal basin, a broad, asymmetric, growing ramp anticline, steep west-facing front and bounded westwards by a steep tectonic scarp truncating gently east dipping Quaternary sandstone beds. The scarp morphology is suggestive of a still preserved co-seismic free face above a colluvial wedge. We carried out more than 20 topographic profiles to document the precise height and shape of this 12-15 m high scarp (above alluvial surface) and to survey a set of uplifted alluvial terraces located along the Shahapur River behind the scarp. The analysis of the topographic profiles around the Shajibazar area reveals the presence of 5 alluvial terraces hanging 3 m to 19 m above Shahapur River bed. T1 and T2 terraces are the best-preserved terraces on both sides of the Shahapur River. C14 and Be 10 ages allow to date the lowest abandonned terrace and to estimate the uplift rate of this area.

  12. Assessing the suitability of benthic foraminiferal morpho-groups to reconstruct paleomonsoon from Bay of Bengal

    Science.gov (United States)

    Manasa, M.; Saraswat, Rajeev; Nigam, Rajiv

    2016-04-01

    Temporal changes in benthic foraminiferal morpho-groups were suggested as an effective proxy to reconstruct past monsoon intensity from the Arabian Sea. Here, in order to test the applicability of temporal variation in morpho-groups to reconstruct past monsoon intensity from the Bay of Bengal, we have documented recent benthic foraminiferal distribution from the continental shelf region of the northwestern Bay of Bengal. Based on the external morphology, benthic foraminifera were categorized into rounded symmetrical (RSBF) and angular asymmetrical benthic foraminifera (AABF). Additionally, a few other dominant groups were also identified based on test composition (agglutinated, calcareous) and abundance (Asterorotalids and Nonions). The relative abundance of each group was compared with the ambient physico-chemical conditions, including dissolved oxygen, organic matter, salinity and temperature. We report that the RSBF are abundant in comparatively warm and well oxygenated waters of low salinity, suggesting a preference for high energy environment, whereas AABF dominate relatively cold, hypersaline deeper waters with low dissolved oxygen, indicating a low energy environment. The agglutinated foraminifera, Asterorotalids and Nonions dominate shallow water, low salinity regions, whereas the calcareous benthic foraminiferal abundance increases away from the riverine influx regions. Food availability, as estimated from organic carbon abundance in sediments, has comparatively less influence on faunal distribution in the northwestern Bay of Bengal, as compared to dissolved oxygen, temperature and salinity. We conclude that the factors associated with freshwater influx affect the distribution of benthic foraminiferal morpho-groups in the northwestern Bay of Bengal and thus it can be used to reconstruct past monsoon intensity from the Bay of Bengal.

  13. Quorum sensing in gram-negative bacteria

    DEFF Research Database (Denmark)

    Wu, H.; Song, Z.J.; Høiby, N.

    2004-01-01

    Bacteria can communicate with each other by means of signal molecules to coordinate the behavior of the entire community, and the mechanism is referred to as quorum sensing (QS). Signal systems enable bacteria to sense the size of their densities by monitoring the concentration of the signal...... molecules. Among Gram-negative bacteria N-acyl-L-homoserine lactone (acyl-HSL)-dependent quorum sensing systems are particularly widespread. These systems are used to coordinate expression of phenotypes that are fundamental to the interaction of bacteria with each other and with their environment...... and particularly higher organisms, covering a variety of functions ranging from pathogenic to symbiotic interactions. The detailed knowledge of these bacterial communication systems has opened completely new perspectives for controlling undesired microbial activities....

  14. Quorum sensing in Gram-negative bacteria

    Institute of Scientific and Technical Information of China (English)

    WU Hong; SONG Zhijun; Niels HФIBY; Michael GIVSKOV

    2004-01-01

    Bacteria can communicate with each other by means of signal molecules to coordinate the behavior of the entire community,and the mechanism is referred to as quorum sensing (QS).Signal systems enable bacteria to sense the size of their densities by monitoring the concentration of the signal molecules.Among Gram-negative bacteria N-acyl-L-homoserine lactone (acyl-HSL)-dependent quorum sensing systems are particularly widespread.These systems are used to coordinate expression of phenotypes that are fundamental to the interaction of bacteria with each other and with their environment and particularly higher organisms,covering a variety of functions ranging from pathogenic to symbiotic interactions.The detailed knowledge of these bacterial communication systems has opened completely new perspectives for controlling undesired microbial activities.

  15. Selenium accumulation and speciation in biofortified chickpea (Cicer arietinum L.) under Mediterranean conditions.

    Science.gov (United States)

    Poblaciones, Maria J; Rodrigo, Sara; Santamaria, Oscar; Chen, Yi; McGrath, Steve P

    2014-04-01

    Millions of people have Se-deficient diets and Se-biofortified crops could prevent such deficiency. The aim of the present study was to evaluate the potential of chickpea for use in Se fertilization programs in order to increase available Se. Two foliar Se fertilizers (sodium selenate and sodium selenite) at four rates (0, 10, 20, 40 g ha(-1)) were tested in the 2010/2011 and 2011/2012 growing seasons in a field experiment conducted under semiarid Mediterranean conditions. Sodium selenate was much more effectively taken by plants than sodium selenite, and there was a strong and linear relationship between total Se content and Se rate for both. For each gram of Se fertilizer, applied either as sodium selenate or sodium selenite, the increases of total Se concentration in grain were 126 and 87, and 25 and 19 µg Se kg(-1) dry weight, in 2010/2011 and 2011/2012, respectively. Se was found to be incorporated into chickpea grains mainly (>70%) as selenomethionine. Se-enriched chickpeas would be a good candidate for inclusion in biofortification programs under semiarid Mediterranean conditions and for promotion as a 'functional food'. © 2013 Society of Chemical Industry.

  16. Agronomic importance of first development of chickpea (Cicer arietinum L.) under semi-arid conditions: II. Seed imbibition.

    Science.gov (United States)

    Ulukan, H; Bayraktar, N; Oksel, A; Gursoy, M; Kocak, N

    2012-02-15

    Due to the slowness growth and weakness of the first developments of chickpea (Cicer arietinum L.), it could not combated with weeds and easily caught up by Ascochyta blight (Ascochyta rabiei (Pass) Labr.) disease. Additionally, due to biotic and abiotic stress factors, esp. at the late sowing, important seed yield losses could be happened. To be able to avoid from them is only possible to accelerate of its first development as possible as. So, one of the best solutions to is to use chemical compounds such as Humic Acid (HA) known soil regulator under the semi-arid conditions. With this aim this research was performed in a Randomized Complete Block Design (RCBD) with four replications under semi-arid field conditions during (2008/2009) and (2009/2010) in Turkiye. Two cultivars (V1 = Gokce and V2 = Ispanyol) and four seed imbibition methods (A0 = 0, A1 = Tap Water, A2 = 1/2 Tap Water + 1/2 Humic acid (HA), A3 = Full HA, as w/w) and seven yield components Plant Height (PH), Number of Branches per Plant (NBP), Number of Pods per Plant (NPP), First Pod Height (NFP), Number of Seeds per Pod (NSP), Seed Weight per Plant (SWP) and 100-Seed weight (HSW) were investigated. The PH and FPH were affected the A0, the NBP, NPP and NSP were affected the A2 and the SWP and HSW were given the varied but not clear responses according to varieties for all the parameters in A1. The A0 and A1 were encouraged the germination and top soil of the plant but, the A2 to A3 were encouraged root system's development. It was concluded that the A2 is a promising method which makes the maximum and positive effect to the first development of the chickpea agronomy under the semi-arid conditions.

  17. Identification of putative and potential cross-reactive chickpea (Cicer arietinum) allergens through an in silico approach.

    Science.gov (United States)

    Kulkarni, Anuja; Ananthanarayan, Laxmi; Raman, Karthik

    2013-12-01

    Allergy has become a key cause of morbidity worldwide. Although many legumes (plants in the Fabaceae family) are healthy foods, they may have a number of allergenic proteins. A number of allergens have been identified and characterized in Fabaceae family, such as soybean and peanut, on the basis of biochemical and molecular biological approaches. However, our understanding of the allergens from chickpea (Cicer arietinum L.), belonging to this family, is very limited. In this study, we aimed to identify putative and cross-reactive allergens from Chickpea (C. arietinum) by means of in silico analysis of the chickpea protein sequences and allergens sequences from Fabaceae family. We retrieved known allergen sequences in Fabaceae family from the IUIS Allergen Nomenclature Database. We performed a protein BLAST (BLASTp) on these sequences to retrieve the similar sequences from chickpea. We further analyzed the retrieved chickpea sequences using a combination of in silico tools, to assess them for their allergenicity potential. Following this, we built structure models using FUGUE: Sequence-structure homology; these models generated by the recognition tool were viewed in Swiss-PDB viewer. Through this in silico approach, we identified seven novel putative allergens from chickpea proteome sequences on the basis of similarity of sequence, structure and physicochemical properties with the known reported legume allergens. Four out of seven putative allergens may also show cross reactivity with reported allergens since potential allergens had common sequence and structural features with the reported allergens. The in silico proteomic identification of the allergen proteins in chickpea provides a basis for future research on developing hypoallergenic foods containing chickpea. Such bioinformatics approaches, combined with experimental methodology, will help delineate an efficient and comprehensive approach to assess allergenicity and pave the way for a better understanding of

  18. High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Gaur, Rashmi; Azam, Sarwar; Jeena, Ganga; Khan, Aamir Waseem; Choudhary, Shalu; Jain, Mukesh; Yadav, Gitanjali; Tyagi, Akhilesh K; Chattopadhyay, Debasis; Bhatia, Sabhyata

    2012-10-01

    The present study reports the large-scale discovery of genome-wide single-nucleotide polymorphisms (SNPs) in chickpea, identified mainly through the next generation sequencing of two genotypes, i.e. Cicer arietinum ICC4958 and its wild progenitor C. reticulatum PI489777, parents of an inter-specific reference mapping population of chickpea. Development and validation of a high-throughput SNP genotyping assay based on Illumina's GoldenGate Genotyping Technology and its application in building a high-resolution genetic linkage map of chickpea is described for the first time. In this study, 1022 SNPs were identified, of which 768 high-confidence SNPs were selected for designing the custom Oligo Pool All (CpOPA-I) for genotyping. Of these, 697 SNPs could be successfully used for genotyping, demonstrating a high success rate of 90.75%. Genotyping data of the 697 SNPs were compiled along with those of 368 co-dominant markers mapped in an earlier study, and a saturated genetic linkage map of chickpea was constructed. One thousand and sixty-three markers were mapped onto eight linkage groups spanning 1808.7 cM (centiMorgans) with an average inter-marker distance of 1.70 cM, thereby representing one of the most advanced maps of chickpea. The map was used for the synteny analysis of chickpea, which revealed a higher degree of synteny with the phylogenetically close Medicago than with soybean. The first set of validated SNPs and map resources developed in this study will not only facilitate QTL mapping, genome-wide association analysis and comparative mapping in legumes but also help anchor scaffolds arising out of the whole-genome sequencing of chickpea.

  19. Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications.

    Science.gov (United States)

    Kudapa, Himabindu; Azam, Sarwar; Sharpe, Andrew G; Taran, Bunyamin; Li, Rong; Deonovic, Benjamin; Cameron, Connor; Farmer, Andrew D; Cannon, Steven B; Varshney, Rajeev K

    2014-01-01

    A comprehensive transcriptome assembly of chickpea has been developed using 134.95 million Illumina single-end reads, 7.12 million single-end FLX/454 reads and 139,214 Sanger expressed sequence tags (ESTs) from >17 genotypes. This hybrid transcriptome assembly, referred to as Cicer arietinumTranscriptome Assembly version 2 (CaTA v2, available at http://data.comparative-legumes.org/transcriptomes/cicar/lista_cicar-201201), comprising 46,369 transcript assembly contigs (TACs) has an N50 length of 1,726 bp and a maximum contig size of 15,644 bp. Putative functions were determined for 32,869 (70.8%) of the TACs and gene ontology assignments were determined for 21,471 (46.3%). The new transcriptome assembly was compared with the previously available chickpea transcriptome assemblies as well as to the chickpea genome. Comparative analysis of CaTA v2 against transcriptomes of three legumes - Medicago, soybean and common bean, resulted in 27,771 TACs common to all three legumes indicating strong conservation of genes across legumes. CaTA v2 was also used for identification of simple sequence repeats (SSRs) and intron spanning regions (ISRs) for developing molecular markers. ISRs were identified by aligning TACs to the Medicago genome, and their putative mapping positions at chromosomal level were identified using transcript map of chickpea. Primer pairs were designed for 4,990 ISRs, each representing a single contig for which predicted positions are inferred and distributed across eight linkage groups. A subset of randomly selected ISRs representing all eight chickpea linkage groups were validated on five chickpea genotypes and showed 20% polymorphism with average polymorphic information content (PIC) of 0.27. In summary, the hybrid transcriptome assembly developed and novel markers identified can be used for a variety of applications such as gene discovery, marker-trait association, diversity analysis etc., to advance genetics research and breeding applications in

  20. Role of indole-3-butyric acid or/and putrescine in improving productivity of chickpea (Cicer arientinum L.) plants.

    Science.gov (United States)

    Amin, A A; Gharib, F A; Abouziena, H F; Dawood, Mona G

    2013-12-15

    The response of chickpea (Cicer arientinum L. cv. Giza 3) to treatment with two plant growth regulators putrescine (Put) and Indole-3-butyric acid (IBA) at 25, 50 and 100 mg L(-1) applied either alone or in combinations was studied. Spraying of Put and IBA either individually or in combination significantly increased the plant height, number and dry weight of branches, leaves and pods/plant and leaf area/plant at the two growth stages. Total photosynthetic pigments in fresh leaves were significantly promoted as a result of application of Put or IBA. Generally, application of Put and/or IBA at 100 mg L(-1) produced the highest numbers of pods which resulted in substantially the highest seed yield. Put and IBA increased the seed yield by 21.3 and 19.2%, respectively, while the combination of Put at 100 mgL(-1) and IBA at 50 mgL(-1) increased it by 27.4%. Greatest increases in straw and biological yield/fed (38.3 and 30.4%, respectively) were noted with the combination treatment of IBA 100 mg L(-1) plus Put at 100 mg L(-1). Put and IBA significantly increased the nitrogen, phosphorus, potassium, total soluble sugars and total free amino acids in chickpea seeds over control, but the effects were less marked than those of their combination. This response was greater following treatment with IBA than with Put. It could be conclude that spraying Put or/and IBA on chickpea plants have promotion effects on the seeds yield criteria which have promising potential as sources of low-cost protein and minerals for possible use as food/feed supplements.

  1. High-efficiency Agrobacterium-mediated transformation of chickpea (Cicer arietinum L.) and regeneration of insect-resistant transgenic plants.

    Science.gov (United States)

    Mehrotra, Meenakshi; Sanyal, Indraneel; Amla, D V

    2011-09-01

    To develop an efficient genetic transformation system of chickpea (Cicer arietinum L.), callus derived from mature embryonic axes of variety P-362 was transformed with Agrobacterium tumefaciens strain LBA4404 harboring p35SGUS-INT plasmid containing the uidA gene encoding β-glucuronidase (GUS) and the nptII gene for kanamycin selection. Various factors affecting transformation efficiency were optimized; as Agrobacterium suspension at OD(600) 0.3 with 48 h of co-cultivation period at 20°C was found optimal for transforming 10-day-old MEA-derived callus. Inclusion of 200 μM acetosyringone, sonication for 4 s with vacuum infiltration for 6 min improved the number of GUS foci per responding explant from 1.0 to 38.6, as determined by histochemical GUS assay. For introducing the insect-resistant trait into chickpea, binary vector pRD400-cry1Ac was also transformed under optimized conditions and 18 T(0) transgenic plants were generated, representing 3.6% transformation frequency. T(0) transgenic plants reflected Mendelian inheritance pattern of transgene segregation in T(1) progeny. PCR, RT-PCR, and Southern hybridization analysis of T(0) and T(1) transgenic plants confirmed stable integration of transgenes into the chickpea genome. The expression level of Bt-Cry protein in T(0) and T(1) transgenic chickpea plants was achieved maximum up to 116 ng mg(-1) of soluble protein, which efficiently causes 100% mortality to second instar larvae of Helicoverpa armigera as analyzed by an insect mortality bioassay. Our results demonstrate an efficient and rapid transformation system of chickpea for producing non-chimeric transgenic plants with high frequency. These findings will certainly accelerate the development of chickpea plants with novel traits.

  2. Genetic characterization of the acetohydroxyacid synthase (AHAS) gene responsible for resistance to imidazolinone in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Thompson, Courtney; Tar'an, Bunyamin

    2014-07-01

    A point mutation in the AHAS1 gene leading to resistance to imidazolinone in chickpea was identified. The resistance is inherited as a single gene. A KASP marker targeting the mutation was developed. Weed control in chickpea (Cicer arietinum L.) is challenging due to poor crop competition ability and limited herbicide options. A chickpea genotype with resistance to imidazolinone (IMI) herbicides has been identified, but the genetic inheritance and the mechanism were unknown. In many plant species, resistance to IMI is caused by point mutation(s) in the acetohydroxyacid synthase (AHAS) gene resulting in an amino acid substitution preventing herbicide attachment to the molecule. The main objective of this research was to characterize the resistance to IMI herbicides in chickpea. Two homologous AHAS genes namely AHAS1 and AHAS2 sharing 80 % amino acid sequence similarity were identified in the chickpea genome. Cluster analysis indicated independent grouping of AHAS1 and AHAS2 across legume species. A point mutation in the AHAS1 gene at C675 to T675 resulting in an amino acid substitution from Ala205 to Val205 confers the resistance to IMI in chickpea. A KASP marker targeting the point mutation was developed and effectively predicted the response to IMI herbicides in a recombinant inbred (RI) population of chickpea. The RI population was used in molecular mapping where the major locus for the reaction to IMI herbicide was mapped to chromosome 5. Segregation analysis across an F2 population and RI population demonstrated that the resistance is inherited as a single gene in a semi-dominant fashion. The simple genetic inheritance and the availability of KASP marker generated in this study would speed up development of chickpea varieties with resistance to IMI herbicides.

  3. Organic and Inorganic Nitrogen Fertilization Effects on Some Physiological and Agronomical Traits of Chickpea (Cicer arietinum L. in Irrigated Condition

    Directory of Open Access Journals (Sweden)

    Ali Namvar

    2013-09-01

    Full Text Available The effects of organic and inorganic nitrogen fertilization on some physiological and agronomical traits of chickpea (Cicer arietinum L. cv. ILC 482, investigated at the Experimental Farm of the Agriculture Faculty, University of Mohaghegh Ardabili. The trial was laid out in spilt plot design based on randomized complete block with four replications. Experimental factors were mineral nitrogen fertilizer at four levels (0, 50, 75 and 100 kg urea/ha in the main plots, and two levels of inoculation with Rhizobium bacteria (with and without inoculation as sub plots. N application and Rh. inoculation showed positive effects on physiological and agronomical traits of chickpea. The highest value of leaf RWC recorded in 50 kg urea/ha that was statistically in par with 75 kg urea/ha application while, usage of 75 kg urea/ha showed the maximum stem RWC. The maximum CMS obtained form application of 75 kg urea/ha. Chlorophyll content, leaf area index and grains protein content showed their maximum values in the highest level of nitrogen usage (100 kg urea/ha. Moreover, inoculated plants had the highest magnitudes of all physiological traits. In the case of agronomical traits, the highest values of plant height, number of primary and secondary branches, number of pods per plant, number of grains per plant, grain and biological yield were obtained from the highest level of nitrogen fertilizer (100 kg urea/ha and Rh. inoculation. Application of 75 kg urea/ha was statistically in par with 100 kg urea/ha in all of these traits. The results pointed out that some N fertilization (i.e. between 50 and 75 kg urea/ha as starter can be beneficial to improve growth, development, physiological traits and total yield of inoculated chickpea.

  4. Evaluation of post-antibiotic effect in Gram-negative and Gram-positive bacteria

    Directory of Open Access Journals (Sweden)

    Elisa Tavella

    2008-03-01

    Full Text Available Although the postantibiotic effect (PAE is a well recognized phenomenon, the mechanism by which it is induced has not fully elucidated yet. It has been suggested that PAE is the time required by bacteria to synthesize proteins or mRNA characterized by a short half-life that are consumed during antibiotic treatment.This phenomenon is widely studied on Gram-positive cocci and Gram-negative rods, while information about Gram-positive rods and Gram-negative cocci are scanty.To gain new insights on the PAE, this study was addressed to evaluated the time required by Moraxella catarrhalis and Lactobacillus planctarum to resume their physiological growth rate after exposure to various antibiotics. Methods PAE was estimated in accordance with the method of Craig and Gudmundsson using the following drugs: penicillin, piperacillin-tazobactam, cefalotin, ceftazidime, imipenem, ciprofloxacin, gentamycin and azithromycin. Log-phase bacteria were exposed to drug at a concentration corresponding to 4 times the MIC value for 1h.The drug was inactivated by 1:1000 dilution. Bacterial counts were determined at time zero, immediately after drug dilution, and at each hour after removal for 6 - 7h by a pour-plate technique. The PAE was defined as the difference in time required by test and control cultures to increase by 1 log in CFU number. Results All drugs tested induced a PAE on the strains studied. M. catarrhalis registered PAE values ranging between 0,5 (gentamycin and 2 (ceftazidime, imipenem and azithromycin.With respect to L. plantarum a PAE between 0,8 (cefalotin and 3 hours (ciprofloxacin were detected. Conclusion. These findings demonstrated that all the drugs tested were able to induce a PAE on the strains tested.This observation differs from that observed on Gram-negative rods characterised by negative PAE values induced by penicillins and cephalosporins.This results might reflect the different target of these compounds on these Gram-positive rods or the

  5. Investigation of XBT and XCTD biases in the Arabian Sea and the Bay of Bengal with implications for climate studies

    Digital Repository Service at National Institute of Oceanography (India)

    Boyer, T.; Gopalakrishna, V.V.; Reseghetti, F.; Naik, A.; Suneel, V.; Ravichandran, M.; Ali, N.P.M.; Rafeeq, M.M.M.; Chico, R.A.

    XCTD, basin-specific FREs are possible for the Bay of Bengal, but not for the Arabian Sea. The XCTD FRE velocity coefficients are significantly higher than the XCTD manufacturers’ FRE coefficient or those from previous tests, possibly resulting from...

  6. Impact of freshwater influx on the cyclogenesis, tracks of cyclones and air-sea coupling over the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Sarma, M.S.S.; Jenson, G.V.; Vidya, P.J.

    Over the Bay of Bengal weather disturbances of considerable seasonal variability in their zones of genesis, intensity, frequency and path across the Bay generate during May-November. This variability in the zones of cyclogenesis and paths of weather...

  7. Impact of atmospheric and physical forcings on biogeochemical cycling of dissolved oxygen and nutrients in the coastal Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.S.S.; Sridevi, B.; Maneesha, K.; Sridevi, T.; Naidu, S.A.; Prasad, V.R.; Venkataramana, V.; Acharya, T.; Bharati, M.D.; Subbaiah, C.V.; Kiran, B.S.; Reddy, N.P.C.; Sarma, V.V.; Sadhuram, Y.; Murty, T.V.R.

    Time-series observations were conducted off Visakhapatnam, central west coast of Bay of Bengal, from October 2007 to April 2009 to examine the influence of physical and atmospheric processes on water column nutrients biogeochemistry. The thermal...

  8. Lack of seasonality in phytoplankton standing stock (chlorophyll a) and production in the western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Madhu, N.V.; Jyothibabu, R.; Maheswaran, P.A.; Gerson, V.J.; Gopalakrishnan, T.C.; Nair, K.K.C.

    The investigations in the western Bay of Bengal (BoB) during summer, winter and spring intermonsoon periods evidenced lack of pronounced seasonal variation in phytoplankton standing stock (chlorophyll a) and primary production. The supply...

  9. Some geodynamic complexities related to the evolution of Bengal Fan and the neotectonic activity of the south Indian shield

    Digital Repository Service at National Institute of Oceanography (India)

    Murthy, K.S.R.

    After three decades of the International Indian Ocean Expedition (IIOE) and in spite of extensive geophysical data collected during the last one decade, the geodynamics of the Bengal Fan and the Peninsular shield at the northern end of the Indian...

  10. Cathodic protection of mild steel and copper in deep waters of the Arabian Sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Venkat, K.; Wagh, A.B.

    Performance of cathodic protection system to mild steel and copper in deep (> 1000 m) oceanic waters of the Arabian Sea and Bay of Bengal has been assessed using aluminium and mild steel sacrificial anodes. The corrosion rates of unprotected metals...

  11. Relationship between summer monsoon rainfall and cyclogenesis over Bay of Bengal during post-monsoon (October-December) season

    Digital Repository Service at National Institute of Oceanography (India)

    Sadhuram, Y.; Maneesha, K.

    seasontransport moisture over the subdivisions towards Bay of Bengal due to cyclonic circulation. This circulation favours upward motion and hence transport moisture vertically to mid-troposphere which causes convective instability and this in turn favour more...

  12. Prediction of lipoprotein signal peptides in Gram-negative bacteria

    DEFF Research Database (Denmark)

    Juncker, Agnieszka; Willenbrock, Hanni; Von Heijne, G.

    2003-01-01

    A method to predict lipoprotein signal peptides in Gram-negative Eubacteria, LipoP, has been developed. The hidden Markov model (HMM) was able to distinguish between lipoproteins (SPaseII-cleaved proteins), SPaseI-cleaved proteins, cytoplasmic proteins, and transmembrane proteins. This predictor...... was able to predict 96.8% of the lipoproteins correctly with only 0.3% false positives in a set of SPaseI-cleaved, cytoplasmic, and transmembrane proteins. The results obtained were significantly better than those of previously developed methods. Even though Gram-positive lipoprotein signal peptides differ...... from Gram-negatives, the HMM was able to identify 92.9% of the lipoproteins included in a Gram-positive test set. A genome search was carried out for 12 Gram-negative genomes and one Gram-positive genome. The results for Escherichia coli K12 were compared with new experimental data, and the predictions...

  13. Monotonic trends in spatio-temporal distribution and concentration of monsoon precipitation (1901-2002), West Bengal, India

    Science.gov (United States)

    Chatterjee, Soumendu; Khan, Ansar; Akbari, Hashem; Wang, Yupeng

    2016-12-01

    This paper intended to investigate spatio-temporal monotonic trend and shift in concentration of monsoon precipitation across West Bengal, India, by analysing the time series of monthly precipitation from 18 weather stations during the period from 1901 to 2002. In dealing with, the inhomogeneity in the precipitation series, RHtestsV4 software package is used to detect, and adjust for, multiple change points (shifts) that could exist in data series. Finally, the cumulative deviation test was applied at 5% significant level to check the homogeneity (presence of historic changes by cumulative deviations test). Afterward, non-parametric Mann-Kendall (MK) test and Theil-Sen estimator (TSE) was applied to detect of nature and slope of trends; and, Sequential Mann Kendall (SQMK) test was applied for detection of turning point and magnitude of change in trends. Prior to the application of statistical tests, the pre-whitening technique was used to eliminate the effect of autocorrelation in precipitation data series. Four indices- precipitation concentration index (PCI), precipitation concentration degree (PCD), precipitation concentration period (PCP) and fulcrum (centre of gravity) were used to detect precipitation concentration and the spatial pattern in it. The application of the above-mentioned procedures has shown very notable statewide monotonic trend for monsoon precipitation time series. Regional cluster analysis by SQMK found increasing precipitation in mountain and coastal regions in general, except during the non- monsoon seasons. The results show that higher PCI values were mainly observed in South Bengal, whereas lower PCI values were mostly detected in North Bengal. The PCI values are noticeably larger in places where both monsoon total precipitation and span of rainy season are lower. The results of PCP reveal that precipitation in Gangetic Bengal mostly occurs in summer (monsoon season), and the rainy season arrives earlier in North Bengal than South Bengal

  14. Gram-positive and gram-negative bacterial toxins in sepsis: a brief review.

    Science.gov (United States)

    Ramachandran, Girish

    2014-01-01

    Bacterial sepsis is a major cause of fatality worldwide. Sepsis is a multi-step process that involves an uncontrolled inflammatory response by the host cells that may result in multi organ failure and death. Both gram-negative and gram-positive bacteria play a major role in causing sepsis. These bacteria produce a range of virulence factors that enable them to escape the immune defenses and disseminate to remote organs, and toxins that interact with host cells via specific receptors on the cell surface and trigger a dysregulated immune response. Over the past decade, our understanding of toxins has markedly improved, allowing for new therapeutic strategies to be developed. This review summarizes some of these toxins and their role in sepsis.

  15. Orbit Classification of Qutrit via the Gram Matrix

    Institute of Scientific and Technical Information of China (English)

    B. A. Tay; Hishamuddin Zainuddin

    2008-01-01

    We classify the orbits generated by unitary transformation on the density matrices of the three-state quantum systems (qutrits) via the Gram matrix. The Gram matrix is a real symmetric matrix formed from the Hilbert-Schmidt scalar products of the vectors lying in the tangent space to the orbits. The rank of the Gram matrix determines the dimensions of the orbits, which fall into three classes for qutrits.

  16. Classification of Bacteriocins from Gram-Positive Bacteria

    Science.gov (United States)

    Rea, Mary C.; Ross, R. Paul; Cotter, Paul D.; Hill, Colin

    Bacteriocins are ribosomally synthesised antimicrobial peptides produced by bacteria, including many Gram-positive species. The classification of bacteriocins from Gram-positive bacteria is complicated by their heterogeneity and thus, as the number of Gram-positive bacteriocins identified has continued to increase, classification schemes have had to continuously evolve. Here, we review the various classification approaches, both historical and current, their underlying scientific basis and their relative merit, and suggest a rational scheme given the state of the art.

  17. Approximate N-Gram Markov Model for Natural Language Generation

    CERN Document Server

    Chen, H H; Chen, Hsin-Hsi; Lee, Yue-Shi

    1994-01-01

    This paper proposes an Approximate n-gram Markov Model for bag generation. Directed word association pairs with distances are used to approximate (n-1)-gram and n-gram training tables. This model has parameters of word association model, and merits of both word association model and Markov Model. The training knowledge for bag generation can be also applied to lexical selection in machine translation design.

  18. Influence of bentonite particles on representative gram negative and gram positive bacterial deposition in porous media.

    Science.gov (United States)

    Yang, Haiyan; Tong, Meiping; Kim, Hyunjung

    2012-11-06

    The significance of clay particles on the transport and deposition kinetics of bacteria in irregular quartz sand was examined by direct comparison of both breakthrough curves and retained profiles with clay particles in bacteria suspension versus those without clay particles. Two representative cell types, Gram-negative strain E. coli DH5α and Gram-positive strain Bacillus subtilis were utilized to systematically determine the influence of clay particles (bentonite) on cell transport behavior. Packed column experiments for both cell types were conducted in both NaCl (5 and 25 mM ionic strengths) and CaCl(2) (5 mM ionic strength) solutions at pH 6.0. The breakthrough plateaus with bentonite in solutions (30 mg L(-1) and 50 mg L(-1)) were lower than those without bentonite for both cell types under all examined conditions, indicating that bentonite in solutions decreased cell transport in porous media regardless of cell types (Gram-negative or Gram-positive) and solution chemistry (ionic strength and ion valence). The enhanced cell deposition with bentonite particles was mainly observed at segments near to column inlet, retained profiles for both cell types with bentonite particles were therefore steeper relative to those without bentonite. The increased cell deposition with bentonite observed in NaCl solutions was attributed to the codeposition of bacteria with bentonite particles whereas, in addition to codeposition of bacteria with bentonite, the bacteria-bentonite-bacteria cluster formed in suspensions also contributed to the increased deposition of bacteria with bentonite in CaCl(2) solution.

  19. Wind-driven coastal upwelling along the western boundary of the Bay of Bengal during the southwest monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Shetye, S.R.; Shenoi, S.S.C.; Gouveia, A.D.; Michael, G.S.; Sundar, D.; Nampoothiri, G.

    monsoon. Occur- rence of shelf waves can have important implications for upwelling along the coast. In their presence, the upwelling intensity at any location is determined not only by the local longshore wind stress, but also by the history of shelf... of Bengal. In: The encyclopedia of oceanography, R. W. FAXRaR~D~E. editor, Dowden, Hutchinson and Ross, Stroudburg, 1021 pp. LEGECKIS R. (1987) Satellite observations of a western boundary current in the Bay of Bengal. Journal of Geophysical Research, 92...

  20. Anopheline Diversity: Morphological and Molecular Variation of An. subpictus in Rural and Urban Areas of West Bengal

    Directory of Open Access Journals (Sweden)

    Satarupa Paul

    2013-04-01

    Full Text Available A systematic survey (March 2012- Feb 2013of Anopheline population in rural(Mogra and urban(Dumdum areas of West Bengal has been conducted to know the present population load of Anopheles subpictus. A reliminary attempt has been made to assess the potential morphological (wing as well as molecular variation of Anopheles subpictus by using ITS-2 sequence primer. A considerable sequence variation is observed between the rural and urban population of West Bengal.

  1. Studies on reproductive biology of Mystus tengara (Ham.-Buch., 1822), a freshwater catfish of West Bengal, India

    OpenAIRE

    Sandipan Gupta; Samir Banerjee

    2013-01-01

    Studies on reproductive biology are essential to assess culture potential of a fish species. Mystus tengara is a popular food fish as well as preferred as an ornamental fish in West Bengal. Till date detailed report on reproductive biology of this fish species in the agro-climatic context of West Bengal is lacking. Therefore, the present work was aimed to study the detailed reproductive biology of Mystus tengara with an emphasis on sex ratio, length at first sexual maturity, cycle of gonadal ...

  2. La Gramática Funcional de Dik Dik's Functional Gram

    Directory of Open Access Journals (Sweden)

    Ligia Ochoa Sierra

    2011-12-01

    Full Text Available Resumen Este artículo da cuenta del modelo lingüístico denominado gramática funcional de Dik. Este modelo ha sido empleado en los últimos sesenta años para hacer descripciones de varias lenguas. Se pretende presentar una visión sistemática y coherente de este modelo. Para ello, se presentan inicialmente las características generales de lo que se denomina gramática funcional, luego se describen la estructura del modelo y los principios metodológicos; por último, se hace una breve alusión al modelo funcional denominado gramática del rol y la referencia. La revisión se basa principalmente en los trabajos pioneros de Dik.Abstract This article presents the linguistic model called Dik's «Functional Grammar». This model has been used in the past sixty years to describe various languages. We try to present a systematic and coherent model. In this way, the general characteristics of what is called Functional Grammar are initially presented. Then we are going to describe the structure of the model and the methodological principles, and finally, a brief reference to the functional model called Grammar Role and Reference. The review is mainly based on the pioneering Dik's work.

  3. Profile of hemoglobin D trait in West Bengal, India

    Directory of Open Access Journals (Sweden)

    Tuphan K. Dolai

    2014-04-01

    Full Text Available Hemoglobin (Hb D Punjab is one of the most commonly observed abnormal hemoglobinopathy worldwide. There was no systematic large published study to investigate the characteristic of Hb D Punjab trait in India. This study was conducted in school and college students, newly married couples and pregnant women after proper counseling in the rural areas of West Bengal state in eastern India. Complete blood count was done by Sysmax Automated Hematology Analyzer KX 21 (Sysmex Corp., Kobe, Japan and thalassemia testing was done using high-performance liquid chromatography (Variant TM - Bio-Rad Lab., Hercules, CA, USA. A total of 46,139 individuals were screened for hemoglobinopathies. Hb D trait was found in 0.35%. Hypochromia rather than microcytosis is consistent finding in Hb D trait. Anisocytosis is absent in Hb D trait. In almost all (99.37% cases, Hb D is within 40% of total hemoglobin. This data is likely to be helpful for screening of hemoglobinopathy in resource poor setting.  血红蛋白(Hb D Punjab是全球最普遍的异常血红蛋白病之一。在印度,之前并没有研究D型特征血红蛋白病的大型出版物。本研究在印度东部的西孟加拉邦的农村地区进行,研究对象是接受过相关咨询后的在校生,大学生,新婚夫妇和孕妇。完整的血细胞计数由日本神户市Sysmex公司的KX21自动化血液分析仪完成,血液测试由美国加州赫拉克勒斯Variant-Bio-Rad实验室通过高效液相色谱法完成。总计46139人被筛查,D型特征血红蛋白病的发现率为0.35%。血红蛋白过少而非小红细胞症,是D型特征血红蛋白病的主要症状。红细胞大小不均没有在D型特征血红蛋白病中被检测出。在所有的情况中(99.37%),D型特征血红蛋白占所有血红蛋白总数的40%。这些数据有利于在资源匮乏地区对血红蛋白病的筛查。

  4. Characterization of fluoride-tolerant halophilic Bacillus flexus NM25 (HQ875778) isolated from fluoride-affected soil in Birbhum District, West Bengal, India.

    Science.gov (United States)

    Pal, Kartick Chandra; Mondal, Naba Kumar; Chatterjee, Soumendranath; Ghosh, Tuhin Subhra; Datta, Jayanta Kumar

    2014-02-01

    A new Gram-positive, nonpigmented, rod-shaped fluoride-tolerant bacterial strain, NM25, was isolated from waterlogged muddy field soil collected from the fluoride endemic area of Rampurhat II block (average fluoride in water, 4.7 mg/l, and in soil, 1.5 mg/kg) in Birbhum District, West Bengal, India. The study was undertaken to characterize the fluoride-tolerant bacterial isolate, to determine its role in bioaccumulation of fluoride, and to analyze the water and soil quality of the bacterial environment. The isolate was positive for catalase, lipase, urease, protease, oxidase, and H2S production, but negative for indole production, nitrate reduction, and Vogues-Proskauer test. The organisms were sensitive to recommended doses of ofloxacin, kanamycin, rifampicin, levofloxacin, vancomycin, gatifloxacin, gentamicin, doxycycline, streptomycin, and nalidixic acid but resistant to ampicillin. Based on the phenotypic characteristics, 16S rRNA gene sequence, and phylogenetic analysis, the bacterial isolate NM25 was identified as Bacillus flexus. The G+C content of the 16S rDNA was 53.14 mol%. This strain tolerated up to 20% (w/v) NaCl in nutrient agar medium and was grown at the pH range 4-12. It reduced fluoride concentration up to 67.45% and tolerated more than 1,500 ppm of fluoride in brain-heart infusion agar medium.

  5. Gram-positive toxic shock syndromes.

    Science.gov (United States)

    Lappin, Emma; Ferguson, Andrew J

    2009-05-01

    Toxic shock syndrome (TSS) is an acute, multi-system, toxin-mediated illness, often resulting in multi-organ failure. It represents the most fulminant expression of a spectrum of diseases caused by toxin-producing strains of Staphylococcus aureus and Streptococcus pyogenes (group A streptococcus). The importance of Gram-positive organisms as pathogens is increasing, and TSS is likely to be underdiagnosed in patients with staphylococcal or group A streptococcal infection who present with shock. TSS results from the ability of bacterial toxins to act as superantigens, stimulating immune-cell expansion and rampant cytokine expression in a manner that bypasses normal MHC-restricted antigen processing. A repetitive cycle of cell stimulation and cytokine release results in a cytokine avalanche that causes tissue damage, disseminated intravascular coagulation, and organ dysfunction. Specific therapy focuses on early identification of the illness, source control, and administration on antimicrobial agents including drugs capable of suppressing toxin production (eg, clindamycin, linezolid). Intravenous immunoglobulin has the potential to neutralise superantigen and to mitigate subsequent tissue damage.

  6. High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria.

    Science.gov (United States)

    Schäfer, A; Kalinowski, J; Simon, R; Seep-Feldhaus, A H; Pühler, A

    1990-03-01

    We report on the mobilization of shuttle plasmids from gram-negative Escherichia coli to gram-positive corynebacteria mediated by P-type transfer functions. Introduction of plasmids into corynebacteria was markedly enhanced after heat treatment of the recipient cells. High-frequency plasmid transfer was also observed when the restriction system of the recipient was mutated. On the basis of our data, we conclude that efficient DNA transfer from gram-negative to gram-positive bacteria, at least to coryneform bacteria, is conceivable in certain natural ecosystems.

  7. Antimicrobial Activity of Carbon Nanoparticles Isolated from Natural Sources against Pathogenic Gram-Negative and Gram-Positive Bacteria

    Directory of Open Access Journals (Sweden)

    Sheena Varghese

    2013-01-01

    Full Text Available This paper describes the isolation of carbon nanoparticles (CNPs from kitchen soot, characterization of the CNPs by UV/visible spectroscopy, SEM and XRD, and their antimicrobial action. The antibacterial activity of the isolated carbon nanoparticles was tested against various pathogenic bacterial strains such as Gram-negative Proteus refrigere and Pseudomonas aeruginosa and Gram-positive Staphylococcus aureus and Streptococcus haemolyticus. The inhibition zones were measured, and it was found that the carbon nanoparticles isolated from natural sources are active against these Gram-negative and Gram-positive bacterial strains.

  8. Lenguaje, belleza y verdad en Cicerón y San Agustín: las encrucijadas de la persuasión

    Directory of Open Access Journals (Sweden)

    Andrés Covarrubias C.

    2002-01-01

    Full Text Available En este artículo me propongo mostrar las profundas diferencias entre Cicerón y San Agustín, desde el punto de vista de sus respectivas visiones del arte retórico. Mientras que, para el primero, la oratoria se ampara en el horizonte de las meras probabilidades, teniendo como fin la persuasión del auditorio, para el Obispo de Hipona, en cambio, el referente último está marcado por el hallazgo de la verdad, a partir de las Sagradas Escrituras. En efecto, Cicerón construye una teoría retórica compatible con la argumentación que debe dominar un buen abogado, sin las limitaciones de la obligación a la verdad y la prohibición del encubrimiento punible, mientras que San Agustín, en el De doctrina christiana, busca el establecimiento de una retórica consecuente con las aspiraciones de un auténtico orador eclesiástico. Debido a la diferencia de objetivos propuestos por cada uno de estos filósofos, mientras Cicerón se aproxima cada vez más a una posición relativista, San Agustín, aceptando la relatividad, busca, sin embargo, una práctica oratoria compatible con la expresión más pura y fidedigna de la verdadIn this article, I attempt to show the profound differences between Cicero and Saint Augustine concerning the rhetorical art. According to Cicero the oratory makes sense in the context of mere probabilities and aims at convincing the audience. Saint Augustine, on the contrary, thinks the scope of the oratory is given by finding truth in the Holy Scriptures. Indeed, Cicero states his theory as compatible with the arguments which a good lawyer should have, no matter they do not follow truth or hide what is against law. In De doctrina christiana, Saint Augustine prefers to state a rhetoric coherent to the aspirations of the authentic ecclesiastical orator. So, it is due to their different theories that Cicero approaches to a relativism, but Saint Augustine, though he accepts relativity, seeks an oratory practice compatible to the

  9. Latitudinal and longitudinal variation in aerosol characteristics from Sun photometer and MODIS over the Bay of Bengal and Arabian Sea during ICARB

    Indian Academy of Sciences (India)

    Sumita Kedia; S Ramachandran

    2008-07-01

    Spatial variations in aerosol optical properties as function of latitude and longitude are analysed over the Bay of Bengal and Arabian Sea during ICARB cruise period of March–May 2006 from in situ sun photometer and MODIS (Terra, Aqua) satellite measurements. Monthly mean 550 nm aerosol optical depths (AODs) over the Bay of Bengal and Arabian Sea show an increase from March to May both in spatial extent and magnitude. AODs are found to increase with latitude from 4°N to 20°N over the Bay of Bengal while over Arabian Sea, variations are not significant. Sun photometer and MODIS AODs agree well within ± 1 variation. Bay of Bengal AOD (0.28) is higher than the Arabian Sea (0.24) latitudinally. Aerosol fine mode fraction (FMF) is higher than 0.6 over Bay of Bengal, while FMF in the Arabian Sea is about 0.5. Bay of Bengal (∼1) is higher than the Arabian Sea value of 0.7, suggesting the dominance of fine mode aerosols over Bay of Bengal which is corroborated by higher FMF values over Bay of Bengal. Air back trajectory analyses suggest that aerosols from different source regions contribute differently to the optical characteristics over the Bay of Bengal and Arabian Sea.

  10. Childhood acute leukemia in West Bengal, India with an emphasis on uncommon clinical features.

    Science.gov (United States)

    Biswas, Saumitra; Chakrabarti, Sudipta; Chakraborty, Jayati; Paul, Prabir Chandra; Konar, Abantika; Das, Shikha

    2009-01-01

    Leukemias are the commonest childhood malignancy in West Bengal. This study was undertaken on 75 children at NRS Medical College, West Bengal to determine the distribution of signs and symptoms of leukemia and to identify unusual clinical features. After obtaining clinical history, physical examination, hematological and radiological investigations were performed. Acute lymphoblastic leukaemia (ALL, 72%) was the commonest followed by acute myeloid leukaemia (AML, 18.7%). Common symptoms and signs were fever (85.3%), pallor (64%), hepatomegaly (72%), splenomegaly (60%) and lymphadenopathy (50.7%). The uncommon signs and symptoms were abdominal pain (9.3%), joint pain (9.3%), hematemesis and malena (8%), diarrhea (5.3%), proptosis (2 cases), dysphagia, mediastinal mass and parotid swelling (1 case each). Uncommon clinical presentations lead to delay in diagnosis in some cases. Awareness of uncommon signs and symptoms of childhood leukemia together with laboratory tests may help in earlier diagnosis and proper management of the patients.

  11. Subclinical arsenicosis in cattle in arsenic endemic area of West Bengal, India.

    Science.gov (United States)

    Rana, Tanmoy; Bera, Asit Kumar; Das, Subhashree; Bhattacharya, Debasis; Pan, Diganta; Das, Subrata Kumar

    2014-05-01

    Arsenic is ubiquitously found metalloid that commonly contaminates drinking water and agricultural food. To minimise the ecotoxicological effect of arsenic in the environment, it is important to ameliorate the deleterious effects on human and animal health. We investigated the effects of arsenic on cattle by estimating arsenic concentration in biological samples of cattle that consumed contaminated drinking water and feedstuffs directly or indirectly. We have selected arsenic prone village that is Ghentugachi, Nadia district, West Bengal, India, along with arsenic safe control village, Akna in Hoogli district, West Bengal, India. It is found that arsenic is deposited highly in blood, urine and faeces. Agricultural field is contaminated through cattle urine, hair, faeces, cow dung cakes and farmyard manure. Bioconcentration factor and biotransfer factor are two important biomarkers to assess the subclinical toxicity in cattle, as they do not exhibit clinical manifestation like human beings.

  12. A large outbreak of Japanese encephalitis predominantly among adults in northern region of West Bengal, India.

    Science.gov (United States)

    Gurav, Yogesh K; Bondre, Vijay P; Tandale, Babasaheb V; Damle, Rekha G; Mallick, Sanjay; Ghosh, Uday S; Nag, Shankha S

    2016-11-01

    Unusual rise of acute encephalitis syndrome cases (AES) were reported in July 2014 in the northern region of West Bengal, India. Investigations were carried out to characterize the outbreak and to identify the associated virus etiology. This observational study is based on 398 line listed AES cases, mostly (70.8%, 282/398) adults, with case fatality ratio of 28.9% (115/398). Japanese encephalitis virus infection was detected in 134 (49.4%) among 271 AES cases tested and most of them (79.1%, 106/134) were adults. The study reports a large outbreak of genotype III Japanese encephalitis among adults in northern region of West Bengal, India. J. Med. Virol. 88:2004-2011, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  13. Gram-positive bacteria persisting in the food production environment

    DEFF Research Database (Denmark)

    Knøchel, Susanne; Harmsen, Morten; Knudsen, Bettina;

    2008-01-01

    Many gram-positive bacteria are able to form aggregates or biofilms and resist external stress factors and some gram-positive pathogenic bacteria such as Listeria monocytogenes and Bacillus cereus may persist in the food production environment for extended periods. Most research has focussed...

  14. Methods for targetted mutagenesis in gram-positive bacteria

    Science.gov (United States)

    Yang, Yunfeng

    2014-05-27

    The present invention provides a method of targeted mutagenesis in Gram-positive bacteria. In particular, the present invention provides a method that effectively integrates a suicide integrative vector into a target gene in the chromosome of a Gram-positive bacterium, resulting in inactivation of the target gene.

  15. Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L. using sanger and next generation sequencing platforms: development and applications.

    Directory of Open Access Journals (Sweden)

    Himabindu Kudapa

    Full Text Available A comprehensive transcriptome assembly of chickpea has been developed using 134.95 million Illumina single-end reads, 7.12 million single-end FLX/454 reads and 139,214 Sanger expressed sequence tags (ESTs from >17 genotypes. This hybrid transcriptome assembly, referred to as Cicer arietinumTranscriptome Assembly version 2 (CaTA v2, available at http://data.comparative-legumes.org/transcriptomes/cicar/lista_cicar-201201, comprising 46,369 transcript assembly contigs (TACs has an N50 length of 1,726 bp and a maximum contig size of 15,644 bp. Putative functions were determined for 32,869 (70.8% of the TACs and gene ontology assignments were determined for 21,471 (46.3%. The new transcriptome assembly was compared with the previously available chickpea transcriptome assemblies as well as to the chickpea genome. Comparative analysis of CaTA v2 against transcriptomes of three legumes - Medicago, soybean and common bean, resulted in 27,771 TACs common to all three legumes indicating strong conservation of genes across legumes. CaTA v2 was also used for identification of simple sequence repeats (SSRs and intron spanning regions (ISRs for developing molecular markers. ISRs were identified by aligning TACs to the Medicago genome, and their putative mapping positions at chromosomal level were identified using transcript map of chickpea. Primer pairs were designed for 4,990 ISRs, each representing a single contig for which predicted positions are inferred and distributed across eight linkage groups. A subset of randomly selected ISRs representing all eight chickpea linkage groups were validated on five chickpea genotypes and showed 20% polymorphism with average polymorphic information content (PIC of 0.27. In summary, the hybrid transcriptome assembly developed and novel markers identified can be used for a variety of applications such as gene discovery, marker-trait association, diversity analysis etc., to advance genetics research and breeding

  16. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Gujaria, Neha; Kumar, Ashish; Dauthal, Preeti; Dubey, Anuja; Hiremath, Pavana; Bhanu Prakash, A; Farmer, Andrew; Bhide, Mangla; Shah, Trushar; Gaur, Pooran M; Upadhyaya, Hari D; Bhatia, Sabhyata; Cook, Douglas R; May, Greg D; Varshney, Rajeev K

    2011-05-01

    A transcript map has been constructed by the development and integration of genic molecular markers (GMMs) including single nucleotide polymorphism (SNP), genic microsatellite or simple sequence repeat (SSR) and intron spanning region (ISR)-based markers, on an inter-specific mapping population of chickpea, the third food legume crop of the world and the first food legume crop of India. For SNP discovery through allele re-sequencing, primer pairs were designed for 688 genes/expressed sequence tags (ESTs) of chickpea and 657 genes/ESTs of closely related species of chickpea. High-quality sequence data obtained for 220 candidate genic regions on 2-20 genotypes representing 9 Cicer species provided 1,893 SNPs with an average frequency of 1/35.83 bp and 0.34 PIC (polymorphism information content) value. On an average 2.9 haplotypes were present in 220 candidate genic regions with an average haplotype diversity of 0.6326. SNP2CAPS analysis of 220 sequence alignments, as mentioned above, provided a total of 192 CAPS candidates. Experimental analysis of these 192 CAPS candidates together with 87 CAPS candidates identified earlier through in silico mining of ESTs provided scorable amplification in 173 (62.01%) cases of which predicted assays were validated in 143 (82.66%) cases (CGMM). Alignments of chickpea unigenes with Medicago truncatula genome were used to develop 121 intron spanning region (CISR) markers of which 87 yielded scorable products. In addition, optimization of 77 EST-derived SSR (ICCeM) markers provided 51 scorable markers. Screening of easily assayable 281 markers including 143 CGMMs, 87 CISRs and 51 ICCeMs on 5 parental genotypes of three mapping populations identified 104 polymorphic markers including 90 markers on the inter-specific mapping population. Sixty-two of these GMMs together with 218 earlier published markers (including 64 GMM loci) and 20 other unpublished markers could be integrated into this genetic map. A genetic map developed here

  17. Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Gaur, Rashmi; Sethy, Niroj K; Choudhary, Shalu; Shokeen, Bhumika; Gupta, Varsha; Bhatia, Sabhyata

    2011-02-17

    Chickpea (Cicer arietinum L.) is an economically important cool season grain legume crop that is valued for its nutritive seeds having high protein content. However, several biotic and abiotic stresses and the low genetic variability in the chickpea genome have continuously hindered the chickpea molecular breeding programs. STMS (Sequence Tagged Microsatellite Sites) markers which are preferred for the construction of saturated linkage maps in several crop species, have also emerged as the most efficient and reliable source for detecting allelic diversity in chickpea. However, the number of STMS markers reported in chickpea is still limited and moreover exhibit low rates of both inter and intraspecific polymorphism, thereby limiting the positions of the SSR markers especially on the intraspecific linkage maps of chickpea. Hence, this study was undertaken with the aim of developing additional STMS markers and utilizing them for advancing the genetic linkage map of chickpea which would have applications in QTL identification, MAS and for de novo assembly of high throughput whole genome sequence data. A microsatellite enriched library of chickpea (enriched for (GT/CA)n and (GA/CT)n repeats) was constructed from which 387 putative microsatellite containing clones were identified. From these, 254 STMS primers were designed of which 181 were developed as functional markers. An intraspecific mapping population of chickpea, [ICCV-2 (single podded) × JG-62 (double podded)] and comprising of 126 RILs, was genotyped for mapping. Of the 522 chickpea STMS markers (including the double-podding trait, screened for parental polymorphism, 226 (43.3%) were polymorphic in the parents and were used to genotype the RILs. At a LOD score of 3.5, eight linkage groups defining the position of 138 markers were obtained that spanned 630.9 cM with an average marker density of 4.57 cM. Further, based on the common loci present between the current map and the previously published chickpea

  18. A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Varshney, Rajeev K; Hiremath, Pavana J; Lekha, Pazhamala; Kashiwagi, Junichi; Balaji, Jayashree; Deokar, Amit A; Vadez, Vincent; Xiao, Yongli; Srinivasan, Ramamurthy; Gaur, Pooran M; Siddique, Kadambot Hm; Town, Christopher D; Hoisington, David A

    2009-11-15

    Chickpea (Cicer arietinum L.), an important grain legume crop of the world is seriously challenged by terminal drought and salinity stresses. However, very limited number of molecular markers and candidate genes are available for undertaking molecular breeding in chickpea to tackle these stresses. This study reports generation and analysis of comprehensive resource of drought- and salinity-responsive expressed sequence tags (ESTs) and gene-based markers. A total of 20,162 (18,435 high quality) drought- and salinity- responsive ESTs were generated from ten different root tissue cDNA libraries of chickpea. Sequence editing, clustering and assembly analysis resulted in 6,404 unigenes (1,590 contigs and 4,814 singletons). Functional annotation of unigenes based on BLASTX analysis showed that 46.3% (2,965) had significant similarity (chickpea. Of 2,965 (46.3%) significant unigenes, only 2,071 (32.3%) unigenes could be functionally categorised according to Gene Ontology (GO) descriptions. A total of 2,029 sequences containing 3,728 simple sequence repeats (SSRs) were identified and 177 new EST-SSR markers were developed. Experimental validation of a set of 77 SSR markers on 24 genotypes revealed 230 alleles with an average of 4.6 alleles per marker and average polymorphism information content (PIC) value of 0.43. Besides SSR markers, 21,405 high confidence single nucleotide polymorphisms (SNPs) in 742 contigs (with > or = 5 ESTs) were also identified. Recognition sites for restriction enzymes were identified for 7,884 SNPs in 240 contigs. Hierarchical clustering of 105 selected contigs provided clues about stress- responsive candidate genes and their expression profile showed predominance in specific stress-challenged libraries. Generated set of chickpea ESTs serves as a resource of high quality transcripts for gene discovery and development of functional markers associated with abiotic stress tolerance that will be helpful to facilitate chickpea breeding. Mapping of

  19. Evaluating the Magnetic Field effects on Growth and Yield of Chickpea (Cicer arietinum under Mashhad Climatic Conditions

    Directory of Open Access Journals (Sweden)

    Gh Mahmoudi

    2016-10-01

    Full Text Available Introduction Effect of magnetic fields is now the subject of an increasingly large research effort because it is known to induce biochemical changes in plant species. In physic science, it is well established that by passing water through a magnetic device, the water can be influenced. On the other hand, the literature review in physical science in different country indicated also that magnetized water induced a change in water physicochemical properties such as conductivity, surface tension, viscosity, vaporization rate, and pH. The magnetic properties of the cells determine their capability in order to absorb and transfer the magnetic energy to other types of energy, transferring these energies within the plant. Therefore, this technology was used in different countries which all reported the successful use of magnets in treating water for irrigation use. Magnetic fields on seeds lead to better germination rate and plant growth than chemical fertilizers. Magnetic fields have been to apply a stimulus effect on growth and germination and on crop yield. Materials and Methods In order to study the effect of magnetic field on growth and total dry matter of chickpea (Cicer arietinum L., an strip plot experiment based on randomized complete block design was conducted at the Agronomy Research Field of Ferdowsi University of Mashhad ( Lat 36˚15' N, Long 59˚28' E; 985 m Altitude during 2013-2014. The first treatment was the exposure of seed to magnetic field in three levels (normal, 100 and 150 mT magnetic field with 120 minutes durations.The magnetic field exert by a device consists of two magnets and the two opposite poles of two magnets that attract each other. Moreover, the intensity of magnetic field changed by adjusting the distance between the poles. It was measured by using a micrometer Tesla meter Leybold- Heraeus51652. The second treatment consisted of water irrigation types as two levels (normal water and magnetized water with 650 m

  20. Cetacean Community Ecology in the Waters of Sri Lanka and the Bay of Bengal

    Science.gov (United States)

    2015-09-30

    1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Cetacean Community Ecology in the Waters of Sri Lanka...novaeangliae in the Arabian Sea. Marine Ecology Progress Series 149:13-21. Smith, B. D., B. Ahmed, R. M. Mowgli and S. Strindberg. 2008. Species occurrence...and distributional ecology of nearshore cetaceans in the Bay of Bengal, Bangladesh, with abundance estimates for Irrawaddy dolphins Orcaella

  1. Enhanced abundance of tintinnids under elevated CO2 level from coastal Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Biswas, H.; Gadi, S.D.; Venkataramana, V.; Bharathi, M.D.; Priyan, R.K.; Manjari, D.T.; DileepKumar, M.

    between 20 and 200µm) are taxonomically diverse and include mainly ciliates, flagellates, dianoflagellates, sarcodines and metazoans (Capriulo et al. 1991). They mostly feed on smaller phytoplankton (nano and pico plankton) and play an important role... the microzooplankton community with very few other groups like mixotrophic dianoflagellates (Peridinium sp., Proocentrun sp.), planktonic foraminifera, micro-gastropod etc. The present study shows that in the coastal water of Bay of Bengal, microzooplankton...

  2. On the distribution of sound velocity in a section of Vzag in the Bay of Bengal

    Directory of Open Access Journals (Sweden)

    J.Siva Rama Sastry

    1956-04-01

    Full Text Available The vertical sound velocity distribution in a section of Visakhapatnam in the Bay of Bengal has been computed making use of Kuwahara's tables. In an attempt to find out the corrections to the echo-sounder readings the average sound velocity distribution is computed together with the sound velocity profiles taking the spot values only. The physical oceanography of the area in relation to the sound velocity distribution is discussed.

  3. Mesozooplankton production, grazing and respiration in the Bay of Bengal: Implications for net heterotrophy

    Science.gov (United States)

    Fernandes, Veronica; Ramaiah, N.

    2016-03-01

    Mesozooplankton samples were collected from the mixed layer along a central (along 88°E) and a western transect in the Bay of Bengal during four seasons covered between 2001 and 2006 in order to investigate spatio-temporal variability in their biomass. At these stations, grazing and respiration rates were measured from live zooplankton hauled in from the surface during December 2005. Akin to the mesozooplankton "paradox" in the central and eastern Arabian Sea, biomass in the mixed layer was more or less invariant in the central and western Bay of Bengal, even as the chl a showed marginal temporal variation. By empirical equation, the mesozooplankton production rate calculated to be 70-246 mg C m- 2 d- 1 is on par with the Arabian Sea. Contrary to the conventional belief, mesozooplankton grazing impact was up to 83% on primary production (PP). Low PP coupled with very high zooplankton production (70% of PP) along with abundant bacterial production (50% of the PP; Ramaiah et al., 2009) is likely to render the Bay of Bengal net heterotrophic, especially during the spring intermonsoon. Greater estimates of fecal pellet-carbon egestion by mesozooplankton compared to the average particulate organic carbon flux in sediment traps, implies that much of the matter is recycled by heterotrophic communities in the mixed layer facilitating nutrient regeneration for phytoplankton growth. We also calculated that over a third of the primary production is channelized for basin-wide zooplankton respiration that accounts for ~ 52 Mt C annually. In the current scenario of global warming, if low (primary) productive warm pools like the Bay of Bengal continue to be net heterotrophic, negative implications like enhanced emission of CO2 to the atmosphere, increased particulate flux to the deeper waters and greater utilization of dissolved oxygen resulting in expansion of the existing oxygen minimum zone are imminent.

  4. Oncogenic HPV among HIV infected female population in West Bengal, India

    OpenAIRE

    Sengupta Sharmila; Bhattacharya Subhasish; Saha Bibhuti; Bal Baishali; Pal Reshmi; Sarkar Kamalesh; Mazumdar Partha; Chakraborti Shekhar

    2011-01-01

    Abstract Background Prevalence of both cervical cancer and Human Immunodeficiency Virus (HIV) infection are very high in India. Natural history of Human Papilloma Virus (HPV) infection is known to be altered in HIV positive women and there is an increased possibility of persistence of HPV infections in this population. Therefore, this study was conducted to understand the epidemiology and circulating genotypes of oncogenic HPV among HIV positive and negative female population in West Bengal, ...

  5. Periodontal status of a given population of West Bengal: An epidemiological study

    OpenAIRE

    2011-01-01

    Background: This paper presents the prevalence and severity of periodontal disease in a given population of West Bengal and its relationship with their age, sex, socioeconomic status, educational background, and dietary habits. Also, the treatment needs on the basis of Community Periodontal Index of Treatment Needs (CPITN), which might be helpful for future planning of dental services. Materials and Methods: A sample of 22,452 individuals aged 15 years and above was selected using a random cl...

  6. Photocatalytic degradation of rose Bengal by semiconducting zinc sulphide used as a photocatalyst

    Directory of Open Access Journals (Sweden)

    Sharma Shweta

    2013-01-01

    Full Text Available Various semiconductors have been used as photocatalysts for removal of different dyes from their aqueous solutions. Zinc sulphide semiconductor is used in the present investigation as a photocatalyst for the removal of rose Bengal dye. Effect of different parameters, which affect the rate of reaction; like pH, concentration of dye, amount of semiconductor and light intensity have been studied. A mechanism has also been proposed in which hydroxyl radicals are shown as an active oxidizing species.

  7. A Study on Problems of Hijras in West Bengal Based on Neutrosophic Cognitive Maps

    OpenAIRE

    Kalyan Mondal; Surapati Pramanik

    2014-01-01

    This paper deals with the problems faced by Hijras in West Bengal in order to find its solutions using neutrosophic cognitive maps. Florentin Smarandache and Vasantha Kandasamy studied neutrosophic cognitive map which is an extension of fuzzy cognitive map by incorporating indeterminacy. Hijras is considered as neither man nor woman in biological point of view. They are in special gender identity (third gender) in Indian society. In their daily life, they have to fac...

  8. Incidence of Japanese Encephalitis among Acute Encephalitis Syndrome Cases in West Bengal, India

    Directory of Open Access Journals (Sweden)

    Bhaswati Bandyopadhyay

    2013-01-01

    Full Text Available Background and Objectives. Japanese encephalitis (JE is the most important cause of acute and epidemic viral encephalitis. Every year sporadic JE cases are reported from the various districts of West Bengal, indicating its endemicity in this state. JE vaccination programme has been undertaken by the State Health Department of West Bengal. This study was aimed at seeing the present scenario of JE among acute encephalitis syndrome (AES cases in West Bengal. Materials and Methods. Blood and/or CSF samples were referred from suspected AES cases to the referral virology laboratory of the Calcutta School of Tropical Medicine from different hospitals of Kolkata. IgM antibody capture ELISA was performed on the CSF and serum samples by JE virus MAC ELISA kit supplied by the National Institute of Virology, Pune. Results. The present study reveals that 22.76% and 5% of the AES cases were positive for JE IgM in 2011 and 2012, respectively. JE is mainly prevalent in children and adolescents below 20 years of age with no gender predilection. Although the percentages of JE positive cases were high in 2011, it sharply decreased thereafter possibly due to better awareness programs, due to mass vaccination, or simply due to natural epidemiological niche periodicity due to herd immunity.

  9. Evaluation of egg production after adoption of biosecurity strategies by backyard poultry farmers in West Bengal

    Directory of Open Access Journals (Sweden)

    I. Samanta

    2015-02-01

    Full Text Available Aim: On the basis of identified source of major bacterial infections at four agro-climatic zones in West Bengal the cost-effective biosecurity strategy was formulated for backyard poultry farmers. The aim of the present study was to assess the adoption. So, the study was aimed to detect the adoption level of the formulated biosecurity strategy to mitigate the Salmonella and Escherichia coli contamination level in the sources and its correlation with egg production in West Bengal. Materials and Methods: A questionnaire was prepared querying regarding the biosecurity measures presently followed by the farmers, if any and egg production of their birds. Subsequent to the interview the formulated biosecurity strategy was conveyed. After 3 months, the interview with the same questionnaire was conducted to the same farmers to detect their adoption level. Results: The change in practices were noted in certain parameters which differs significantly (p<0.01 or p<0.05. As a consequence, the average egg production/flock was increased in 3 months after adoption of the strategy (618.2±37.77/flock in comparison to last 3 months average before adoption of the strategy (495.3±30.00/flock which also differs significantly (p<0.01. Conclusion: The present study detected the implementation of the biosecurity strategy in backyard poultry farming in West Bengal can substantially benefit the farmers in terms of increased egg production.

  10. Ethnobotanical survey of folklore plants used in treatment of snakebite in Paschim Medinipur district, West Bengal

    Institute of Scientific and Technical Information of China (English)

    Sumana Sarkhel

    2014-01-01

    Objective: To investigate and collect information from traditional health healers/tribal communities on the use of medicinal plants for treatment of snakebite. Methods:The ethno-medicinal study was conducted in 8 villages of the Paschim Medinipur district of West Bengal in 2012-2013 through questionnaire and personal interviews. Following the method of Martin, information about medicinal plants used in snake bite, precise plant parts used, methods of treatment and administration was enquired from the tribal communities (Santhals, Mundas, Lodhas, Bhumijs, Oraon Kherias) of the region. Results:The present study enumerates 20 ethnomedicinal plant species belonging to 16 families used by the tribal communities and medicinal healers of Paschim Medinipur district, West Bengal in treatment of snakebite. Each plant species has been listed alphabetically according to its botanical name, family, vernacular name, part(s) used, mode of preparation/administration. Conclusions:The importance of traditional medicinal system among the tribal communities of Paschim Medinipur district of West Bengal has been highlighted in the present study.

  11. Distribution of Heavy Metals in Surface Sediments of the Bay of Bengal Coast

    Directory of Open Access Journals (Sweden)

    M. Z. H. Khan

    2017-01-01

    Full Text Available The concentrations of major (Si, Al, Ca, Fe, and K and minor (Cd, Mn, Ni, Pb, U, Zn, Co, Cr, As, Cu, Rb, Sr, and Zr, elements in the surficial sediments were studied in an attempt to establish their concentration in the Bengal coast. It was revealed that the majority of the trace elements have been introduced into the Bengal marine from the riverine inflows that are also affected by the impact of industrial, ship breaking yard, gas production plant, and urban wastes. The concentration of heavy metals was measured using Atomic Absorption Spectroscopy and Energy Dispersive X-ray fluorescence instruments. The highest concentrations for several trace elements were thus recorded which generally decrease with distance from the coast. It was observed that the heavy metal concentrations in the sediments generally met the criteria of international marine sediment quality. However, both the contamination factor and pollution load index values suggested the elevation of some metals’ concentrations in the region. Constant monitoring of the Bengal coast water quality needs to be recorded with a view to minimizing the risk of health of the population and the detrimental impacts on the aquatic ecosystem.

  12. Distribution of Heavy Metals in Surface Sediments of the Bay of Bengal Coast

    Science.gov (United States)

    Hasan, M. R.; Khan, M.; Aktar, S.; Fatema, K.

    2017-01-01

    The concentrations of major (Si, Al, Ca, Fe, and K) and minor (Cd, Mn, Ni, Pb, U, Zn, Co, Cr, As, Cu, Rb, Sr, and Zr,) elements in the surficial sediments were studied in an attempt to establish their concentration in the Bengal coast. It was revealed that the majority of the trace elements have been introduced into the Bengal marine from the riverine inflows that are also affected by the impact of industrial, ship breaking yard, gas production plant, and urban wastes. The concentration of heavy metals was measured using Atomic Absorption Spectroscopy and Energy Dispersive X-ray fluorescence instruments. The highest concentrations for several trace elements were thus recorded which generally decrease with distance from the coast. It was observed that the heavy metal concentrations in the sediments generally met the criteria of international marine sediment quality. However, both the contamination factor and pollution load index values suggested the elevation of some metals' concentrations in the region. Constant monitoring of the Bengal coast water quality needs to be recorded with a view to minimizing the risk of health of the population and the detrimental impacts on the aquatic ecosystem. PMID:28255298

  13. Increasing trend of Japanese encephalitis cases in West Bengal, India - a threat to paediatric population

    Directory of Open Access Journals (Sweden)

    Debjani Taraphdar

    2012-10-01

    Full Text Available Objective: To detect the Japanese encephalitis virus (JEV as the etiologic agent from the acute encephalitis syndrome (AES cases mainly amongst the children and young adults from vaccinated and non-vaccinated districts of West Bengal. Methods: For the detection of JEV, a total of 828 sera were referred from vaccinated and non vaccinated districts of West Bengal during 2005-2011. Japanese encephalitis (JE positive cases were confirmed by ELISA and RT-PCR method. Results: Out of 828 cases, 245 samples were positive by ELISA method and 46 samples were positive by RT-PCR method. Out of 291 total positive cases, 162 (55.6% were below 20 years of age. Initially in 2005, JE cases were highest amongst the children and young adults (0-20 years. After vaccination, although the JE cases declined gradually in the vaccinated districts, but again from 2010, JE cases from the said age group showed an increasing trend from those districts. JE cases were also reported from other endemic zones of this state, which were still non-vaccinated. Conclusions: In West Bengal, JE cases are still predominated among children and young adults till the year 2011. Mass scale vaccination programme and investigation on the circulating strains are essentially required to find out the reasons of increasing tendency of JE cases in this state.

  14. Distribution of Heavy Metals in Surface Sediments of the Bay of Bengal Coast.

    Science.gov (United States)

    Khan, M Z H; Hasan, M R; Khan, M; Aktar, S; Fatema, K

    2017-01-01

    The concentrations of major (Si, Al, Ca, Fe, and K) and minor (Cd, Mn, Ni, Pb, U, Zn, Co, Cr, As, Cu, Rb, Sr, and Zr,) elements in the surficial sediments were studied in an attempt to establish their concentration in the Bengal coast. It was revealed that the majority of the trace elements have been introduced into the Bengal marine from the riverine inflows that are also affected by the impact of industrial, ship breaking yard, gas production plant, and urban wastes. The concentration of heavy metals was measured using Atomic Absorption Spectroscopy and Energy Dispersive X-ray fluorescence instruments. The highest concentrations for several trace elements were thus recorded which generally decrease with distance from the coast. It was observed that the heavy metal concentrations in the sediments generally met the criteria of international marine sediment quality. However, both the contamination factor and pollution load index values suggested the elevation of some metals' concentrations in the region. Constant monitoring of the Bengal coast water quality needs to be recorded with a view to minimizing the risk of health of the population and the detrimental impacts on the aquatic ecosystem.

  15. A Statistical Cyclone Intensity Prediction (SCIP) model for the Bay of Bengal

    Indian Academy of Sciences (India)

    S D Kotal; S K Roy Bhowmik; P K Kundu; Ananda Kumar Das

    2008-04-01

    A statistical model for predicting the intensity of tropical cyclones in the Bay of Bengal has been proposed. The model is developed applying multiple linear regression technique. The model parameters are determined from the database of 62 cyclones that developed over the Bay of Bengal during the period 1981–2000. The parameters selected as predictors are: initial storm intensity, intensity changes during past 12 hours, storm motion speed, initial storm latitude position, vertical wind shear averaged along the storm track, vorticity at 850 hPa, Divergence at 200 hPa and sea surface temperature (SST). When the model is tested with the dependent samples of 62 cyclones, the forecast skill of the model for forecasts up to 72 hours is found to be reasonably good. The average absolute errors (AAE) are less than 10 knots for forecasts up to 36 hours and maximum forecast error of order 14 knots occurs at 60 hours and 72 hours. When the model is tested with the independent samples of 15 cyclones (during 2000 to 2007), the AAE is found to be less than 13 knots (ranging from 5.1 to 12.5 knots) for forecast up to 72 hours. The model is found to be superior to the empirical model proposed by Roy Bhowmik et al (2007) for the Bay of Bengal.

  16. Periodontal conditions and treatment in urban and rural population of West Bengal, India

    Institute of Scientific and Technical Information of China (English)

    Mehta R; Kundu D; Chakrabarty S; Bharati P

    2010-01-01

    Objective:To search adequate epidemiological data on periodontal conditions for the planning of oral health programs in Indian population, and to determine the prevalence of periodontal diseases, in regards to age and gender of urban and rural population in West Bengal, India. Methods: 22 542 subjects aged 15 years onwards, representative of rural and urban areas of West Bengal were examined for their periodontal conditions using the community periodontal index (CPI).Results: Supra and/or sub gingival calculus dominated as the most frequent score (score 2) among males (76.51%) and females (76.58%), which was least affected in young age group and higher in rural population. Severity of highest score were significant (P<0.001) according to their gender, age group and habitation and had independent effects (P<0.001) on it. Mean number of sextants affected by scores 1, 2, 3, & 4 were more in the rural areas. Assessed treatment needed was predominantly type II (Scaling and improved oral hygiene).Conclusions:The severe periodontal condition (Score 2, 3 and 4) is observed among rural males in older age group more than its urban counterparts of West Bengal, India.

  17. Non-HACEK gram-negative bacillus endocarditis.

    Science.gov (United States)

    Morpeth, Susan; Murdoch, David; Cabell, Christopher H; Karchmer, Adolf W; Pappas, Paul; Levine, Donald; Nacinovich, Francisco; Tattevin, Pierre; Fernández-Hidalgo, Núria; Dickerman, Stuart; Bouza, Emilio; del Río, Ana; Lejko-Zupanc, Tatjana; de Oliveira Ramos, Auristela; Iarussi, Diana; Klein, John; Chirouze, Catherine; Bedimo, Roger; Corey, G Ralph; Fowler, Vance G

    2007-12-18

    Infective endocarditis caused by non-HACEK (species other than Haemophilus species, Actinobacillus actinomycetemcomitans, Cardiobacterium hominis, Eikenella corrodens, or Kingella species) gram-negative bacilli is rare, is poorly characterized, and is commonly considered to be primarily a disease of injection drug users. To describe the clinical characteristics and outcomes of patients with non-HACEK gram-negative bacillus endocarditis in a large, international, contemporary cohort of patients. Observations from the International Collaboration on Infective Endocarditis Prospective Cohort Study (ICE-PCS) database. 61 hospitals in 28 countries. Hospitalized patients with definite endocarditis. Characteristics of non-HACEK gram-negative bacillus endocarditis cases were described and compared with those due to other pathogens. Among the 2761 case-patients with definite endocarditis enrolled in ICE-PCS, 49 (1.8%) had endocarditis (20 native valve, 29 prosthetic valve or device) due to non-HACEK, gram-negative bacilli. Escherichia coli (14 patients [29%]) and Pseudomonas aeruginosa (11 patients [22%]) were the most common pathogens. Most patients (57%) with non-HACEK gram-negative bacillus endocarditis had health care-associated infection, whereas injection drug use was rare (4%). Implanted endovascular devices were frequently associated with non-HACEK gram-negative bacillus endocarditis compared with other causes of endocarditis (29% vs. 11%; P gram-negative bacilli was high (24%) despite high rates of cardiac surgery (51%). Because of the small number of patients with non-HACEK gram-negative bacillus endocarditis in each treatment group and the lack of long-term follow-up, strong treatment recommendations are difficult to make. In this large, prospective, multinational cohort, more than one half of all cases of non-HACEK gram-negative bacillus endocarditis were associated with health care contact. Non-HACEK gram-negative bacillus endocarditis is not primarily a disease

  18. Gramática cognitiva y enseñanza de la gramática de ele

    OpenAIRE

    Castañeda Castro, Alejandro

    2015-01-01

    La enseñanza de algunos aspectos especialmente escurridizos de la gramática de segundas lenguas puede beneficiarse de la concepción del lenguaje y los instrumentos descriptivos de este que ofrece la Gramática Cognitiva (GC) (Langacker). Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech.

  19. Criblage et performances agronomiques de 45 génotypes de pois chiche (Cicer arietinum L. soumis à un régime hydrique limité

    Directory of Open Access Journals (Sweden)

    Ben Mbarek K.

    2009-01-01

    Full Text Available Screening and agronomic performances of 45 chickpea genotypes (Cicer arietinum L. submitted to a limited hydrous pattern. In Tunisia, chickpea (Cicer arietinum L. is one of the most important legume grain crops. It is conducted during two periods of the year either as winter crop or as spring crop. The last type has the advantage to occupy the soil in a short period of time (February to June. However, it exposes plants to water stress. Consequently, vegetative development and grain yield are negatively affected in quantity and quality. In order to study plant reactions to drought conditions, 45 genotypes of chickpea (C. arietinum were tested in delayed spring culture under a water stressed treatment. A field trial was carried out in the region of Chott Mariem belonging to the semi-arid superior. The drought stress is established at the beginning of flowering stage and was accentuated during the grain filling and the seed maturity phases. To evaluate the chickpea genotypes stress tolerance, parameters related to the vegetative development, the seed yield, the water use efficiency and the thermal duration were measured. The analysis of the grain yield and its components revealed that there is a biological diversity among the genotypes tested. The 45 accessions can be divided into three groups. The first one is composed of ‘Kabuli’ chickpea genotypes which are sensitive to drought stress. They are not appropriate for spring crop in semi-arid regions. The second group is composed of genotypes, of which two are of ‘Dési’ type, that are tolerant to drought stress and can be recommended for a spring crop in the superior semi-arid zones. The last group of genotypes is moderately sensitive to drought stress. They can be led as spring crop in the semi-arid superior zones with complementary irrigations.

  20. The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes.

    Science.gov (United States)

    Misra, Gopal; Priya, Piyush; Bandhiwal, Nitesh; Bareja, Neha; Jain, Mukesh; Bhatia, Sabhyata; Chattopadhyay, Debasis; Tyagi, Akhilesh K; Yadav, Gitanjali

    2014-12-18

    Availability of the draft nuclear genome sequences of small-seeded desi-type legume crop Cicer arietinum has provided an opportunity for investigating unique chickpea genomic features and evaluation of their biological significance. The increasing number of legume genome sequences also presents a challenge for developing reliable and information-driven bioinformatics applications suitable for comparative exploration of this important class of crop plants. The Chickpea Genomic Web Resource (CGWR) is an implementation of a suite of web-based applications dedicated to chickpea genome visualization and comparative analysis, based on next generation sequencing and assembly of Cicer arietinum desi-type genotype ICC4958. CGWR has been designed and configured for mapping, scanning and browsing the significant chickpea genomic features in view of the important existing and potential roles played by the various legume genome projects in mutant mapping and cloning. It also enables comparative informatics of ICC4958 DNA sequence analysis with other wild and cultivated genotypes of chickpea, various other leguminous species as well as several non-leguminous model plants, to enable investigations into evolutionary processes that shape legume genomes. CGWR is an online database offering a comprehensive visual and functional genomic analysis of the chickpea genome, along with customized maps and gene-clustering options. It is also the only plant based web resource supporting display and analysis of nucleosome positioning patterns in the genome. The usefulness of CGWR has been demonstrated with discoveries of biological significance made using this server. The CGWR is compatible with all available operating systems and browsers, and is available freely under the open source license at http://www.nipgr.res.in/CGWR/home.php.

  1. Bacteremias por bacilos gram-negativos

    Directory of Open Access Journals (Sweden)

    Adrelírio J. R. Gonçalves

    1969-01-01

    Full Text Available São apresentados 31 casos de bacteremia por gram-negativos, assunto que vem merecendo muita atenção dos pesquisadores nos últimos anos. Os organismos etiológicos mais importantes que apareceram em igualdade de freqüência foram Escherichia coli e Klebsiella-Aerobacter, sendo responsáveis por 58% do total das infecções, seguidos por Pseudomonas. A porta de entrada mais freqüente foi o trato urinário em 61,3% dos casos. A infecção foi mais comum no sexo masculino e a faixa etária de 50 a 60 anos predominou. O uso prévio de antibióticos foi um fator predisponente muito importante, seguido pelo uso de esteróides e citostáticos. As principais doenças predisponentes foram diabetes mellitus e neoplasias malignas. Os principais fatores precipitantes foram a manipulação do aparelho urinário, com infecção prévia ou desencadeada, cirurgia do aparelho digestivo, uronatia obstrutiva e obstrução biliar. As principais manifestações clínicas foram a presença de febre, calafrios e hipotensão arterial. A complicação mais freqüente foi o choque bacteriano que incidiu em 58% dos casos, aproximadamente três vêzes aquela relatada na literatura. As outras foram a insuficiência renal aguda, superinfecção e infecção pulmonar metastática. Considerações terapêuticas gerais e esquemas de antibióticos são propostos para estes casos. A mortalidade da bacteremia simples foi de 30,7% e quando associada ao choque elevou-se para 72,2% . As infecções por Pseudomonas foram 100% fatais.

  2. Effect of betamethasone in combination with antibiotics on gram positive and gram negative bacteria.

    Science.gov (United States)

    Artini, M; Papa, R; Cellini, A; Tilotta, M; Barbato, G; Koverech, A; Selan, L

    2014-01-01

    Betamethasone is an anti-inflammatory steroid drug used in cases of anaphylactic and allergic reactions, of Alzheimer and Addison diseases and in soft tissue injuries. It modulates gene expression for anti-inflammatory activity suppressing the immune system response. This latter effect might decrease the effectiveness of immune system response against microbial infections. Corticosteroids, in fact, mask some symptoms of infection and during their use superimposed infections may occur. Thus, the use of glucocorticoids in patients with sepsis remains extremely controversial. In this study we analyzed the in vitro effect of a commercial formulation of betamethasone (Bentelan) on several Gram positive and Gram negative bacteria of clinical relevance. It was found to be an inhibitor of the growth of most of the strains examined. Also the effect of betamethasone in combination with some classes of antibiotics was evaluated. Antibiotic-steroid combination therapy is, in such cases, superior to antibiotic-alone treatment to impair bacterial growths. Such effect was essentially not at all observable on Staphylococcus aureus or Coagulase Negative Staphylococci (CoNS).

  3. Cytokine profile in severe Gram-positive and Gram-negative abdominal sepsis.

    Science.gov (United States)

    Surbatovic, Maja; Popovic, Nada; Vojvodic, Danilo; Milosevic, Ivan; Acimovic, Gordana; Stojicic, Milan; Veljovic, Milic; Jevdjic, Jasna; Djordjevic, Dragan; Radakovic, Sonja

    2015-06-16

    Sepsis is a principal cause of death in critical care units worldwide and consumes considerable healthcare resources. The aim of our study was to determine whether the early cytokine profile can discriminate between Gram-positive and Gram-negative bacteraemia (GPB and GNB, respectively) and to assess the prognostic value regarding outcome in critically ill patients with severe abdominal sepsis. The outcome measure was hospital mortality. Blood samples were obtained from 165 adult patients with confirmed severe abdominal sepsis. Levels of the proinflammatory mediators TNF-α, IL-8, IL-12 and IFN-γ and the anti-inflammatory mediators IL-1ra, IL-4, IL-10 and TGF-β1 were determined and correlated with the nature of the bacteria isolated from the blood culture and outcome. The cytokine profile in our study indicated that the TNF-α levels were 2-fold, IL-8 were 3.3-fold, IFN-γ were 13-fold, IL-1ra were 1.05-fold, IL-4 were 1.4-fold and IL-10 were 1.83-fold higher in the GNB group compared with the GPB group. The TNF-α levels were 4.7-fold, IL-8 were 4.6-fold, IL-1ra were 1.5-fold and IL-10 were 3.3-fold higher in the non-survivors compared with the survivors.

  4. Defining a role for Hfq in Gram-positive bacteria

    DEFF Research Database (Denmark)

    Nielsen, Jesper Sejrup; Lei, Lisbeth Kristensen; Ebersbach, Tine

    2010-01-01

    Small trans-encoded RNAs (sRNAs) modulate the translation and decay of mRNAs in bacteria. In Gram-negative species, antisense regulation by trans-encoded sRNAs relies on the Sm-like protein Hfq. In contrast to this, Hfq is dispensable for sRNA-mediated riboregulation in the Gram-positive species...... mechanism, and that Hfq facilitates the binding of LhrA to its target. The work presented here provides the first experimental evidence for Hfq-dependent riboregulation in a Gram-positive bacterium. Our findings indicate that modulation of translation by trans-encoded sRNAs may occur by both Hfq...

  5. Antioxidant activity via DPPH, gram-positive and gram-negative antimicrobial potential in edible mushrooms.

    Science.gov (United States)

    Ahmad, Nisar; Mahmood, Fazal; Khalil, Shahid Akbar; Zamir, Roshan; Fazal, Hina; Abbasi, Bilal Haider

    2014-10-01

    Edible mushrooms (EMs) are nutritionally rich source of proteins and essential amino acids. In the present study, the antioxidant activity via 1,1-diphenyl-2-picrylhydrazyl (DPPH) and antimicrobial potential in EMs (Pleurotus ostreatus, Morchella esculenta, P. ostreatus (Black), P. ostreatus (Yellow) and Pleurotus sajor-caju) were investigated. The DPPH radical scavenging activity revealed that the significantly higher activity (66.47%) was observed in Morchella esculenta at a maximum concentration. Similarly, the dose-dependent concentrations (200, 400, 600, 800 and 1000 µg) were also used for other four EMs. Pleurotus ostreatus exhibited 36.13% activity, P. ostreatus (Black (B)) exhibited 30.64%, P. ostreatus (Yellow (Y)) exhibited 40.75% and Pleurotus sajor-caju exhibited 47.39% activity at higher concentrations. Furthermore, the antimicrobial potential were investigated for its toxicity against gram-negative bacterial strains (Escherichia coli, Pseudomonas aeroginosa, Salmonella typhi, Klebsiella pneumonia, Erwinia carotovora and Agrobacterium tumifaciens), gram-positive bacterial strains (Bacillus subtilis, Bacillus atrophaeus and Staphylococcus aureus) and a fungal strain (Candida albicans) in comparison with standard antibiotics. Antimicrobial screening revealed that the ethanol extract of P. ostreatus was active against all microorganism tested except E. coli. Maximum zone of inhibition (13 mm) was observed against fungus and A. tumifaciens. P. sajor-caju showed best activities (12.5 mm) against B. subtilis, B. atrophaeus and K. pneumonia. P. ostreatus (Y) showed best activities against P. aeroginosa (21.83 mm), B. atrophaeus (20 mm) and C. albicans (21 mm). P. ostreatus (B) exhibited best activities against C. albicans (16 mm) and slightly lower activities against all other microbes except S. typhi. M. esculenta possess maximum activities in terms of inhibition zone against all microorganisms tested except S. typhi.

  6. Diverse Gram-positive bacteria identified from raw and pasteurized ...

    African Journals Online (AJOL)

    Bacterial agents, especially gram-positive bacteria as they are widely distributed in the environment, may ... by the dominant presence of Staphylococcus aureus and Bacillus cereus that can lead to public health ... coagulase negative (15.

  7. Biodegradative activities of some gram- negative bacilli isolated ...

    African Journals Online (AJOL)

    The biodegradative activities of three Gram negative bacilli (Aeromonas ... Cowpea seeds of the variety Samaru-40 were cultivated and observed for eight weeks. ... of germination, plant height, number of leaves, leaf area and root nodules.

  8. IN VZTRO SUSCEPTIBILITY OF GRAM-NEGATIVE BACTERIAL ...

    African Journals Online (AJOL)

    IN VITRO SUSCEPTIBlLlTY OF GRAM-NEGATTVE BACTERIAL ISOLATES TO CHLORHEXIDINE GLUCONATE. Y. Mengisru ... isolates to CHG was determined by agar dilution method .... Principles and practice of disinfection preservation.

  9. Volatile metabolites from some gram-negative bacteria

    DEFF Research Database (Denmark)

    Schöller, Charlotte; Molin, Søren; Wilkins, Ken

    1997-01-01

    A survey of volatile organic compounds (VOCs) excreted from various Gram-negative bacteria (Pseudomonas spp., Serratia spp. and Enterobacter spp.) was carried out. Compounds were identified by gas chromatography-mass spectrometry. VOCs identified included dimethyl disulphide, dimethyl trisulphide...

  10. LexGram - a practical categorial grammar formalism -

    OpenAIRE

    1995-01-01

    We present the LexGram system, an amalgam of (Lambek) categorial grammar and Head Driven Phrase Structure Grammar (HPSG), and show that the grammar formalism it implements is a well-structured and useful tool for actual grammar development.

  11. Hierarchical Classification of Chinese Documents Based on N-grams

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    We explore the techniques of utilizing N-gram informatio n tocategorize Chinese text documents hierarchically so that the classifier can shak e off the burden of large dictionaries and complex segmentation processing, and subsequently be domain and time independent. A hierarchical Chinese text classif ier is implemented. Experimental results show that hierarchically classifying Chinese text documents based N-grams can achieve satisfactory performance and outperforms the other traditional Chinese text classifiers.

  12. Pulmonary infiltrates during community acquired Gram-negative bacteremia

    DEFF Research Database (Denmark)

    Fjeldsøe-Nielsen, Hans; Gjeraa, Kirsten; Berthelsen, Birgitte G

    2013-01-01

    The primary aim of this study was to describe the frequency of pulmonary infiltrates on chest X-ray (CXR) during community acquired Gram-negative bacteremia at a single centre in Denmark.......The primary aim of this study was to describe the frequency of pulmonary infiltrates on chest X-ray (CXR) during community acquired Gram-negative bacteremia at a single centre in Denmark....

  13. Dustborne and Airborne Gram-Positive and Gram-Negative Bacteria in High versus Low ERMI Homes

    Science.gov (United States)

    Adhikari, Atin; Kettleson, Eric M.; Vesper, Stephen; Kumar, Sudhir; Popham, David L.; Schaffer, Christopher; Indugula, Reshmi; Chatterjee, Kanistha; Allam, Karteek K.; Grinshpun, Sergey A.; Reponen, Tiina

    2014-01-01

    The study aimed at investigating Gram-positive and Gram-negative bacteria in moldy and non-moldy homes, as defined by the home’s Environmental Relative Moldiness Index (ERMI) value. The ERMI values were determined from floor dust samples in 2010 and 2011 and homes were classified into low (5) ERMI groups based on the average ERMI values as well as 2011 ERMI values. Dust and air samples were collected from the homes in 2011 and all samples were analyzed for Gram-positive and Gram-negative bacteria using QPCR assays, endotoxin by the LAL assay, and N-acetyl-muramic acid using HPLC. In addition, air samples were analyzed for culturable bacteria. When average ERMI values were considered, the concentration and load of Gram-positive bacteria determined with QPCR in house dust, but not air, were significantly greater in high ERMI homes than in low ERMI homes. Furthermore, the concentration of endotoxin, but not muramic acid, in the dust was significantly greater in high ERMI than in low ERMI homes. In contrast, when ERMI values of 2011 were considered, Gram-negative bacteria determined with QPCR in air, endotoxin in air, and muramic acid in dust were significantly greater in high ERMI homes. The results suggest that both short-term and long-term mold contamination in homes could be linked with the bacterial concentrations in house dust, however, only the current mold status was associated with bacterial concentrations in air. Although correlations were found between endotoxin and Gram-negative bacteria as well as between muramic acid and Gram-positive bacteria in the entire data set, diverging associations were observed between the different measures of bacteria and the home moldiness. It is likely that concentrations of cells obtained by QPCR and concentrations of cell wall components are not equivalent and represent too broad categories to understand the bacterial composition and sources of the home microbiota. PMID:24642096

  14. Assessment of oral health status of Santal (Tribal children of West Bengal

    Directory of Open Access Journals (Sweden)

    Shyamapada Mandal

    2015-01-01

    Full Text Available Context: Santal is the third largest tribal community of India leading a very poor standard of education and life style. There are, however, few population-based studies evaluating the oral health status among Santal children in West Bengal. Aims: The aim of the study was to evaluate the oral health status of Santal children of West Bengal by assessing prevalence of dental caries and inflammatory condition of gingival. Settings and Design: Santal children aged between 2-14 years (N = 1205 were randomly selected from different Santal communities of West Bengal for this study. The children were divided into three different groups according to dentition. Materials and Methods: Caries for permanent dentition Decayed Missing Filled Tooth (DMFT, for deciduous dentition decayed extracted filled (def index was used. For mixed dentition DMF and def was measured respectively and then added together. Inflammatory condition of gingival was assessed by papillary marginal attachment (PMA index. Statistical Analysis Used: the data was analyzed statistically by SPSS software version 11. Results: The study showed there was no significant difference (P > 0.05 between the average decayed extracted filled teeth (deft/DMFT for boys and girls in deciduous and permanent dentition. But in mixed dentition this value for the boys was significantly higher (P < 0.001 than girls. ′Z′ values were found to be non significant when compared mild, moderate and severe gingivitis between boys and girls in each dentition group, but mild gingivitis significantly increases from deciduous dentition to mixed to permanent dentition (P <0.001.

  15. Epidemiological and Microbiological Diagnosis of Suppurative Keratitis in Gangetic West Bengal, Eastern India

    Directory of Open Access Journals (Sweden)

    Basak Samar

    2005-03-01

    Full Text Available PURPOSE: To determine the epidemiologcial pattern and risk factors involved in suppurative corneal ulceration in Gangetic West Bengal, eastern India, and to identify the specific microbial agents responsible for corneal infections. METHODS: All patients with suspected microbial keratitis presenting to the corneal clinic at Disha Eye Hospital, Barrackpore, West Bengal, India, from January 2001 to December 2003 were evaluated. Sociodemographic data and information pertaining to the risk factors were recorded. After diagnosing infective corneal ulcer clinically, corneal scraping and cultures were performed. RESULTS: Over a three-year period, 1198 patients with suppurative keratitis were evaluated. Ocular trauma was the most common predisposing factor in 994 (82.9% patients (P< 0.0001, followed by use of topical corticosteroids in 231 (19.28% patients. Cultures were positive in 811 (67.7% patients. Among these culture positive cases, 509 (62.7% patients had pure fungal infections (P< 0.001, 184 (22.7% patients had pure bacterial infections and 114 (14.1% had mixed fungal with bacterial infections. Acanthamoeba was detected in 4 (0.49% patients. The most common fungal pathogen was Aspergillus spp representing 373 (59.8% of all positive fungal cultures (P< 0.0001, followed by Fusarium spp in 132 (21.2% instances. Most common bacterial isolate was Staphylococcus aureus, representing 127 (42.6% of all the bacterial culture (P< 0.0001 followed by Pseudomonas spp 63 (21.1%. CONCLUSION: Suppurative keratitis in Gangetic West Bengal, most often occurs after a superficial corneal trauma with vegetative or organic materials. Fungal ulcers are more common than bacterial ulcers. Aspergillus spp and Staphylococcus aureus were the most common fungus and bacteria respectively. These ′regional′ findings have important public health implications for the treatment and prevention of suppurative corneal ulceration in this region of India.

  16. CUMIN (CUMINUM CYMINUM L.; UMBELLIFERAE CULTIVATION IN WEST BENGAL PLAINS, KALYANI, NADIA

    Directory of Open Access Journals (Sweden)

    Paul Rita

    2012-02-01

    Full Text Available Cumin (Cuminum cyminum L.; Family: Umbelliferae is a seed spice of commercial importance as well as it is a potential medicinal herb with immense therapeutic uses not withstanding its significance in health food formulations. Seeds (fruits yield essential oil cuminaldehyde, and it is used in perfume industry. The species is reported to be widely cultivated (major states: Rajasthan and Gujrat in India, excepting West Bengal and Assam. Good field and viable seeds (evidenced from Scanning Electron Microscopy and viability test performed following the use of 1% tetrazolium chloride of cumin (seed moisture content – 8.2% collected from Zonal Adaptive Govt. Research Station, Krishnanagar, West Bengal were grown in the Experimental field plots of University of Kalyani, Nadia (latitude 22º 50´ to 24º 11´ N, longitude 88º 09´ to 88º 48´ E, elevation 48 feet above sea level; sandy loamy soil, pH – 6.8 during the months of December to April 2009-2010. Seeds of mother stock germinated (petriplate – 100.0%; field – 54.0%, survivality – 55.56% and plants were raised and flowers started from early February. Male meiosis (2n=14; mean chromosome association/cell at metaphase- 6.80II+0.35I, chiasma/nucleus- 10.4±0.3, coefficient of chiasma terminalization– 0.66, predominance of rod bivalents at MI; 100.0% anaphase I cells were cytologically balanced and pollen grains (assessed following 1% acetocarmine staining technique fertility (84.8% were nearly normal. On histological examinations of mother fruit stock it was found that it possessed distinct fruit wall layers, endosperm, embryo and oil vittae but fruits of raised plants were devoid of embryo and endosperm. The present investigation possibly provided some evidences regarding failure of cumin cultivation in West Bengal though a representative location was considered.

  17. Evaluation of chronic arsenic poisoning due to consumption of contaminated ground water in West Bengal, India

    Directory of Open Access Journals (Sweden)

    Asutosh Ghosh

    2013-01-01

    Full Text Available Background: Chronic arsenic poisoning is an important public health problem and most notable in West Bengal and Bangladesh. In this study different systemic manifestations in chronic arsenic poisoning were evaluated. Methods: A nonrandomized, controlled, cross-sectional, observational study was carried out in Arsenic Clinic, Institute of Postgraduate Medical Education and Research, Kolkata, West Bengal, over a period of 1 year 4 months. Seventy-three cases diagnosed clinically, consuming water containing arsenic ≥50 μg/L and having hair and nail arsenic level >0.6 μg/L, were included. Special investigations included routine parameters and organ-specific tests. Arsenic levels in the drinking water, hair, and nail were measured in all. Twenty-five nonsmoker healthy controls were evaluated. Results: Murshidabad and districts adjacent to Kolkata, West Bengal, were mostly affected. Middle-aged males were the common sufferers. Skin involvement was the commonest manifestation (100%, followed by hepatomegaly [23 (31.5%] with or without transaminitis [7 (9.58%]/portal hypertension [9 (12.33%]. Restrictive abnormality in spirometry [11 (15.06%], bronchiectasis [4 (5.47%], interstitial fibrosis [2 (2.73%], bronchogenic carcinoma [2 (2.73%], oromucosal plaque [7 (9.58%], nail hypertrophy [10 (13.69%], alopecia [8 (10.95%], neuropathy [5 (6.84%], and Electrocardiography abnormalities [5 (6.84%] were also observed. Conclusions: Mucocutaneous and nail lesions, hepatomegaly, and restrictive change in spirometry were the common and significant findings. Other manifestations were characteristic but insignificant.

  18. Air-sea CO2 flux pattern along the southern Bay of Bengal waters

    Science.gov (United States)

    Shanthi, R.; Poornima, D.; Naveen, M.; Thangaradjou, T.; Choudhury, S. B.; Rao, K. H.; Dadhwal, V. K.

    2016-12-01

    Physico-chemical observations made from January 2013 to March 2015 in coastal waters of the southwest Bay of Bengal show pronounced seasonal variation in physico-chemical parameters including total alkalinity (TA: 1927.390-4088.642 μmol kg-1), chlorophyll (0.13-19.41 μg l-1) and also calculated dissolved inorganic carbon (DIC: 1574.219-3790.954 μmol kg-1), partial pressure of carbon dioxide (pCO2: 155.520-1488.607 μatm) and air-sea CO2 flux (FCO2: -4.808 to 11.255 mmol Cm-2 d-1). Most of the physical parameters are at their maximum during summer due to the increased solar radiation at cloud free conditions, less or no riverine inputs, and lack of vertical mixing of water column which leads to the lowest nutrients concentration, dissolved oxygen (DO), biological production, pCO2 and negative flux of CO2 to the atmosphere. Chlorophyll and DO concentrations enhanced due to increased nutrients during premonsoon and monsoon season due to the vertical mixing of water column driven by the strong winds and external inputs at respective seasons. The constant positive loading of nutrients, TA, DIC, chlorophyll, pCO2 and FCO2 against atmospheric temperature (AT), lux, sea surface temperature (SST), pH and salinity observed in principal component analysis (PCA) suggested that physical and biological parameters play vital role in the seasonal distribution of pCO2 along the southwest Bay of Bengal. The annual variability of CO2 flux clearly depicted that the southwest Bay of Bengal switch from sink (2013) to source status in the recent years (2014 and 2015) and it act as significant source of CO2 to the atmosphere with a mean flux of 0.204 ± 1.449 mmol Cm-2 d-1.

  19. Thermohaline features of the subsurface cyclonic eddy in the south central Bay of Bengal during August 1999

    Indian Academy of Sciences (India)

    P Madhusoodanan; V V James

    2003-06-01

    Analysis of the spatial data collected along two sections of temperature and salinity from Chennai to 13°N and 87°E and back to Chennai onboard INS Sagardhwani during the Bay of Bengal Monsoon Experiment (BOBMEX) from 10th to 20th August 1999 revealed the presence of a prominent cyclonic eddy centered around 280km away from the coast. Analysis of the dissipation rate of the cyclonic eddy from transect one to transect two and from the analysis of the TOPEX data, it may be inferred that the cyclonic eddy is possibly due to the presence of westward propagating Rossby waves in the Bay of Bengal.

  20. A brief study on the imprints of seismo tectonic activities in the crust of central and southern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, K.V.L.N.S.; Subrahmanyam, A.S.; Subrahmanyam, V.; Murty, G.P.S.; Rao, K.M.

    and structural re-adjustments (ii) earth tremors and sedimentary layerand basement beforeGSE of Dec2004 Southern Bay of Bellgal The effect of GSE is more in southern Bayof Bengal between Nagapattinam and Pondicherry. This pan is a structurally controlled basin....Previousresults indicate that IT Imprintsof seismo tectonicactivities inthe crustof pans of Bay of Bengal --~ . i' . " " "'. ,. Fig.S. Sarellirederil'ed gral'iry allomaly data of Hm' of BellRalsho'A'i1ll!the imprillls of cru.\\.talstructure alld glm'in' lows (After Salld...

  1. Sound-Speed Prediction as a Function of Temperature at Discrete Depths in the Bay of Bengal

    Directory of Open Access Journals (Sweden)

    P. K. Dineshkumar

    1988-07-01

    Full Text Available Through regression analysis, temperature dependent relationships are developed to predict sound-speed. at discrete depths in the Bay of Bengal, thereby demonstrating the feasibility of sound-speed prediction through polynomial expressions in temperature disregarding salinity variations. A separate regression equation is develbped for the historical sound-speed and temperature data at the standard depths upto 250 m. At specific depths and in the given geographic area in the Bay of Bengal (5-8" N, 90-93" E polynomials of temperature are proved to be a precise way to predict sound-speed.

  2. Studies on mid gut microbiota of wild caught Culex (Culex quinquefasciatus mosquitoes from Barasat (North 24 Parganas of West Bengal.

    Directory of Open Access Journals (Sweden)

    Abhishek Pal

    2014-06-01

    Full Text Available Mosquitoes are haematophagous insects that serve as obligate intermediate host for numerous diseases like Filaria, Malaria, Dengue, etc. Mosquitoes can be considered as a holobiont units in which host (mosquitoes and its gut microbiota are involved in a complex reciprocal interaction. The naturally acquired microbiota can modulate mosquitos’ vectorial capacity by inhibiting the development of pathogens. But, enough care has not been taken in West Bengal to investigate on the midgut microbiota of Culex mosquitoes. Therefore, a preliminary attempt has been undertaken to study the morphology, growth pattern and antibiotic susceptibility of midgut microbiota of Culex (Culex quinquefasciatus mosquitoes collected from Barasat areas (North 24 Parganas of West Bengal..

  3. Drifting and meandering of Olive Ridley Sea turtles in the Bay of Bengal: Role of oceanic Rossby waves

    Digital Repository Service at National Institute of Oceanography (India)

    Ram, P.S.; Rao, S.A.; Sadhuram, Y.

    in the direction of geostrophic currents. It is found that the locations of these thermal fronts in the Bay of Bengal are primarily determined by the Oceanic Rossby waves and local Ekman pumping. Key Words: Bay of Bengal, Circulation, Cyclonic and Anti... drawn with black dots shows the meandering path of the rest of the three turtles. Locations of the turtles at different times are also shown as white stars. A strong anti-cyclonic gyre (warm core eddy) centered at 17º N with SSHD above 30 cm...

  4. Study of HLA Class I gene in Indian schizophrenic patients of Siliguri, West Bengal.

    Science.gov (United States)

    Singh, Bisu; Bera, Nirmal Kumar; De, Santanu; Nayak, Chittaranjan; Chaudhuri, Tapas Kumar

    2011-09-30

    The authors studied the prevalence of the human leukocyte antigen (HLA) Class I gene in 136 (85 male, 51 female) India-born schizophrenia patients residing in and around the Siliguri subdivision of West Bengal by the PCR-SSP method. The control group consisted of 150 age- and sex-matched healthy individuals from the same ethnic group as the patients. Increased frequency of HLA A*03 as well as decreased frequencies of HLA A*31 and HLA B*51, was noted. The study suggests the possible existence of a susceptibility locus for schizophrenia within the HLA region.

  5. Controls of dimethyl sulphide in the Bay of Bengal during BOBMEX-Pilot cruise 1998

    Digital Repository Service at National Institute of Oceanography (India)

    Shenoy, D.M.; DileepKumar, M.; Sarma, V.V.S.S.

    the attention of those studying the boundary layer. The Indian Ocean is the least studied in this respect (Kettle et al 1999). The surface mixed layer in the bay of Bengal is maintained through the combined effects of wind forcing and fresh water run-off (Shetye... Chromatograph equipped with Chromosil 330 separator column and Flame Photometric Detector. The precision of DMS analysis was found to be 8--10%. Samples for DMSP were immediately subjected to alkali hydrolysis (Turner et al 1990) during which it decomposed...

  6. Variations in long term wind speed during different decades in Arabian Sea and Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    SanilKumar, V.; Philip, C.S.

    in long term wind speed during different decades in Arabian Sea and Bay of Bengal V Sanil Kumar ∗ and C Sajiv Philip Ocean Engineering, National Institute of Oceanography (Council of Scientific & Industrial Research), Goa 403 004, India. ∗ e-mail: sanil... enhancing measurements from com- mercial aircrafts. Thus this reanalysis data which covers the period from January 1958 to December 2000 is selected for the study. The grid covering the study locations are given in table 1. NCEP reanalysis data has a spatial...

  7. East India Coastal Current induced eddies and their interaction with tropical storms over Bay of Bengal.

    Digital Repository Service at National Institute of Oceanography (India)

    Patnaik, K.V.K.R.K.; Maneesha, K.; Sadhuram, Y.; Prasad, K.V.S.R.; Murty, T.V.R.; Rao, V.B.

    feedback to the atmosphere (Namias and Canyan, 1981). For example the hurricane “Opal” that occurred in 1995 intensified rapidly from Category 1 to Category 4 status within 14 hours as it passed over a warm core eddy and encountered a deeper and warmer...’s negative feedback, helps to maintain and even boost the TC intensity. Though Bay of Bengal is well known for eddies, quantitative analysis on the role of these eddies in the intensification of storms is still lacking. Ali et al. (2007...

  8. Evolution of cyclonic eddies and biogenic fluxes in the northern Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Nuncio, M.; PrasannaKumar, S.

    1 Author version: Biogeosciences Discuss., vol.10; 2013; 16213-16236 Evolution of cyclonic eddies and biogenic fluxes in the northern Bay of Bengal M. Nuncio1 and S. Prasanna Kumar2* 1 National Centre for Antarctic and Ocean Research, Head Land... from 1994 to 1998 as satellite derived sea-level anomaly (SLA) was available only from 1994. Evolution of eddies in relation to the biogenic flux was studied by analysing 7 day merged SLA of Topex-Posiedon/ERS/Jason satellites obtained from AVISO...

  9. Chikungunya virus infection amongst the acute encephalitis syndrome cases in West Bengal, India

    Directory of Open Access Journals (Sweden)

    D Taraphdar

    2015-01-01

    Full Text Available Chikungunya virus (CHIKV infection from the acute encephalitis syndrome cases is an uncommon form and has been observed in the year 2010-11 from West Bengal, India. The case-1 and case-2 had the acute encephalitis syndrome; case-3 was of acute disseminated encephalomyelitis whereas the case-4 had the symptoms of meningo-encephalopathy with bulbar involvement. We are reporting four cases with neurological complications involving central nervous system (CNS due to CHIKV infection from this state for the first time. The virus has spread almost every districts of this state rapidly. At this stage, these cases are public health threat.

  10. Channa andrao, a new species of dwarf snakehead from West Bengal, India (Teleostei: Channidae).

    Science.gov (United States)

    Britz, Ralf

    2013-10-30

    Channa andrao, new species, from Lefraguri swamp, West Bengal, India, differs from all its congeners except, C. asiatica, C. bleheri and C. burmanica and the recently described C. hoaluensis and C. ninhbinhensis by the absence of pelvic fins. It can be distinguished from all other pelvic fin-less species of snakeheads by its colour pattern, and differs further in its number of vertebrae, dorsal- and anal-fin rays, and lateral-line scales from individual snakehead species in this complex. Channa andrao raises the number of snakehead species endemic to the Eastern Himalaya biodiversity hotspot to ten, representing almost one third of the known species in the genus.

  11. Natural peste des petits ruminants virus infection in Black Bengal goats: virological, pathological and immunohistochemical investigation.

    Science.gov (United States)

    Chowdhury, Emdadul Haque; Bhuiyan, Ataur Rahman; Rahman, Mohammad Mushfiqur; Siddique, Mohammad Sahinur Alam; Islam, Mohammad Rafiqul

    2014-11-14

    Peste des Petits Ruminants (PPR), also known as Goat Plague, occurs in goats, sheep and related species. It is caused by a morbillivirus in the family Paramyxoviridae. In Bangladesh PPR is endemic and it causes serious economic losses. Pathology of PPR has been reported in different goat and sheep breeds from natural and experimental infections. Field results are better indicators of pathogenicity of the circulating virus. The severity of the disease varies with species, breed and immune status of the host. Pathological investigations of natural outbreaks of PPR in Balck Bengal goats are very limited. The current investigation was aimed at describing pathology and antigen localization in natural PPR infections in Black Bengal goats. A total of 28 outbreaks were investigated clinically and virologically. Average flock morbidity and mortality were 75% and 59%, respectively, with case fatality rate of 74%. Necropsy was conducted on 21 goats from 15 outbreaks. The major gross lesions were congestion of gastrointestinal tract, pneumonia, engorged spleen, and oedematous lymphnodes. Histopathological examination revealed severe enteritis with denudation of intestinal epithelium, severe broncho-interstitial pneumonia with macrophages within lung alveoli and extensive haemorrhages with depletion of lymphoid cells and infiltration of macrophages in the sinuses of spleen. In lymph nodes, the cortical nodules were replaced by wide sinusoids with severe depletion of lymphocytes, infiltration of mononuclear cells and some giant cells in sub-capsular areas and medullary sinuses. PPR virus antigen was found in pneumocytes and alveolar macrophages in lungs. Viral RNA could be detected by RT-PCR in 69 out of 84 nasal swab, 59 out of 84 blood and 21 out of 21 lymph node samples. Sequence analyses revealed closeness of Bangladeshi strains with other recent Asian isolates. Natural outbreaks of PPR in Black Bengal goats in Bangladesh resulted in 75% and 59% flock morbidity and mortality

  12. A study on bed utilization in the gynaecological ward of a district hospital in West Bengal.

    Science.gov (United States)

    Dutta, S; Biswas, R; Lahiri, A

    2005-01-01

    A study was conducted in a non-paying gynaecological ward of the district hospital, South 24 Parganas, West Bengal to assess different bed efficiency indicators. Total 331 patients were admitted in 23 study beds (12 OPD beds and 11 emergency beds) during an observation period of six months. Overall average number of admissions were 14.4 and average length of stay 14.7days. Bed turnover rate was 13.8 and was higher for emergency beds (22.1) compared to OPD beds (9). Bed occupancy rate was 61.3% with significant difference between OPD beds (57.5%) and emergency beds (65.4%).

  13. Inbreeding effects on palmar dermatoglyphic characters in three endogamous social groups of West Bengal, India.

    Science.gov (United States)

    Banik, S Datta

    2014-02-01

    The present study reports inbreeding effects on mean palmar dermatoglyphic characteristics: triradial count on palm, maximal atd angle, adt angle, td ridge count, ab ridge count, main line index (MLI) and ab ridge breadth. Samples were drawn from adult males belonging to three endogamous sections representing Hindu caste Telaga of Kharagpur (West Midnapore), Ansari Muslims of Nandigram (East Midnapore) and Sheik-Sunni Muslims of Braddhaman in West Bengal, India. Consistent trend of higher mean triradial number, adt angle, and lower mean td ridge count, ab ridge count, and ab ridge breadth was observed in inbred sections compared to their non-inbred relatives in three social groups.

  14. Auto-correlation analysis of wave heights in the Bay of Bengal

    Indian Academy of Sciences (India)

    Abhijit Sarkar; Jignesh Kshatriya; K Satheesan

    2006-04-01

    Time series observations of significant wave heights in the Bay of Bengal were subjected to auto-correlation analysis to determine temporal variability scale.The analysis indicates an exponential fall of auto-correlation in the first few hours with a decorrelation time scale of about six hours.A similar figure was found earlier for ocean surface winds.The nature of variation of auto-correlation with time lags was also found to be similar for winds and wave heights.

  15. A chromatographic approach to distinguish Gram-positive from Gram-negative bacteria using exogenous volatile organic compound metabolites.

    Science.gov (United States)

    Ramírez-Guízar, Susana; Sykes, Hannah; Perry, John D; Schwalbe, Edward C; Stanforth, Stephen P; Perez-Perez, Ma Cristina I; Dean, John R

    2017-06-09

    This paper utilized L-alanine aminopeptidase activity as a useful approach to distinguish between Gram-negative and Gram-positive bacteria. This was done using two enzyme substrates, specifically 2-amino-N-phenylpropanamide and 2-amino-N-(4-methylphenyl)propanamide which liberated the volatile compounds aniline and p-toluidine, respectively. Two complementary analytical techniques have been used to identify and quantify the VOCs, specifically static headspace multicapillary column gas chromatography ion mobility spectrometry (SHS-MCC-GC-IMS) and headspace solid phase microextraction gas chromatography mass spectrometry (HS-SPME-GC-MS). Superior limits of detection were obtained using HS-SPME-GC-MS, typically by a factor of x6 such that the LOD for aniline was 0.02μg/mL and 0.01μg/mL for p-toluidine. In addition, it was also possible to determine indole interference-free by HS-SPME-GC-MS at an LOD of 0.01μg/mL. The approach was applied to a range of selected bacteria: 15 Gram-negative and 7 Gram-positive bacteria. Use of pattern recognition, in the form of Principal Component Analysis, confirmed that it is possible to differentiate between Gram-positive and Gram-negative bacteria using the enzyme generated VOCs, aniline and p-toluidine. The exception was Stenotrophomonas maltophilia which showed negligible VOC concentrations for both aniline and p-toluidine, irrespective of the analytical techniques used and hence was not characteristic of the other Gram-negative bacteria investigated. The developed methodology has the potential to be applied for clinical and food applications. Copyright © 2017 Elsevier B.V. All rights reserved.

  16. Comparison of rose bengal-chloramphenicol and modified aureomycin-rose bengal-glucose-peptone agar as media for the enumeration of molds and yeasts in water by membrane filtration techniques.

    Science.gov (United States)

    Albaum, Silva; Masaphy, Segula

    2009-03-01

    The present study compares the suitability of rose bengalchloramphenicol (RBCh) and modified aureomycin-rose bengal glucose-peptone agar for enumerating fungi recovered from diverse water sources using the membrane filtration method. Both mold and yeast colonies were established more rapidly, with more intensified colony colors and higher RBCh counts.

  17. Molecular Characterization of Black Bengal and Jamuna Pari Goat Breeds By RAPD Markers

    Directory of Open Access Journals (Sweden)

    M. A. Rahman

    2006-01-01

    Full Text Available This experiment was conducted in the Genetics, Breeding and Reproductive Biotechnology Laboratory under Goat and Sheep Production Research Division, Bangladesh Livestock Research Institute (BLRI, Saver, Dhaka, Bangladesh. DNA was extracted from 14 goat breeds and the extracted DNA was observed by gel electrophoresis. Eight goat specific primers were synthesized by ASM-800 DNA synthesizer and screened in the study and all these primers were capable of priming polymorphic amplification pattern in both the breeds. Random amplification of polymorphic DNA – Polymerase Chain Reaction (RAPD-PCR analysis was carried out using DNA samples of 14 black bengal goat and Jamuna pari goat breeds. Only unambiguous, reproducible and scorable polymorphic fragments were taken into consideration for analysis. Data were analyzed by using a computer programe POPGENE (Version 1.31. Highest level of Nei's[1] gene diversity value (0.4898 was observed in BMS 1494 locus and the mean genetic diversity was obtained 0.3724 among the 14 goat breeds. The highest number of polymorphism obserbed in primer BM1818.The pair-wise genetic distance value ranged from 0.2500 to 1.000. Dendrogram based on Nei's[1] genetic distance using Unweighted Pair Group Method of Arithmetic Means (UPGMA indicated segregation of the 14 goat breeds. Within Jamuna pari goat genetic similarity is low as well as black Bengal goat.

  18. Population Growth, Socio-economy and Quality of life in Birbhum District, West Bengal, India

    Directory of Open Access Journals (Sweden)

    Piyal Basu Roy

    2011-09-01

    Full Text Available The present study attempts to analyze the decadal variation of population growth, socio-economic condition and quality of life of the people in Birbhum District, West Bengal, India. It has been well accepted that if the amount of resource available within a country does not feed its total inhabitants due to excessive population in comparison to existing resource, quality of life of individual and socio-economy of that area collapse, which is very often found in developing nations of the world. Consequently, well being of common people through provision of basic needs like food, clothing, shelter, education, and health is obstructed. This adversely affects the quality of life of an individual. Increasing rate of population growth brings reduction in per capita income of people by creating pressure on land, making consumer product costlier and decreasing national capital. Moreover, the increase in the population growth rate due to high fertility, low mortality and inflow of migrants prevent improved quality of life also. Among others factors influencing Quality of Life (QOL in particular and socio-economic development and human well being in general are literacy, dietary pattern, transportation, and health service etc., the assessment of which reveals that study area turns out to be one of the backward districts of West Bengal where socio-economy and quality of life are of unfortunate character due to excessive population growth and inconsistent infrastructural development that cannot keep pace with the population increase.

  19. Present scenario of hemoglobinopathies in West Bengal, India: An analysis of a large population

    Directory of Open Access Journals (Sweden)

    Prakas Kumar Mandal

    2014-10-01

    Full Text Available Background: To find out the prevalence of hemoglobinopathies by screening large population in West Bengal from Eastern India. Materials and Methods: A total of 50,487 subjects are screened for hemoglobinopathies from June 2010 to August 2013. A 2.5 ml of venous blood samples were collected in the tri-potassium EDTA vacuum container from each subject and tested with automated blood cell counter (Sysmex KX21 for red cell indices. Diagnosis of hemoglobinopathies was done by VARIANT TM (Bio-Rad Laboratories, Hercules, CA, USA high performance liquid chromatography (HPLC. Results: Out of 50,487 cases, 44,620 (88.38% had normal and 5,867(11.62% showed abnormal hemoglobin fractions on HPLC. Of these, 5,180(10.26% were heterozygotes (traits and 687(1.36% cases were either homozygotes or compound heterozygote for different types of hemoglobinopathies. The following hemoglobinopathies were present: β-thalassemia trait 6.61%, HbE trait 2.78%, sickle cell trait 0.56%, HbD-Punjab trait 0.21%, β-thalassemia major 0.73%, HbEE 0.05%, compound heterozygosity for HbE-β-thalassemia 0.42%, and HbS-β-thalassemia 0.15%. Conclusion: Among the hemoglobinopathies, β-thalassemia trait (6.61% and HbE trait (2.78% are prevalent in rural Bengal.

  20. Nature of solute loads in the rivers of the Bengal drainage basin, Bangladesh

    Science.gov (United States)

    Datta, Dilip K.; Subramanian, V.

    1997-11-01

    The Bengal drainage basin is geologically one of the youngest and tectonically most active denudation regimes of the world, and encompasses the total lower reaches of the Ganges-Brahmaputra-Meghna (GBM) drainage basin. The GBM river system contributes around 4.5% of the total annual global freshwater flux to the oceans. The solute load of the GBM river system is dominated by the carbonate weathering products of the transport-limited denudation regime. However, in the Meghna basin, which drains a mountainous region, silicate weathering is slightly more predominant, and the solute load tends to be more influenced by the atmospheric contribution. The river system represents about 5% (152×10 6 t yr -1) of the annual global chemical flux to the world's oceans. The chemical denudation rate of the GBM system in the Bengal basin, is one of the world's highest (79-114 t km -2 yr -1), suggesting intensive weathering and erosion in the drainage basin both in Bangladesh as well as in the hinterlands of India and China.

  1. Serum Chemistry Variables of Bengal Tigers (Panthera tigris tigris Kept in Various Forms of Captivity

    Directory of Open Access Journals (Sweden)

    U. Farooq*, S. Sajjad1, M. Anwar1 and B.N. Khan2

    2012-05-01

    Full Text Available There is a dearth of published literature regarding the effect of captivity on serum chemistry variables of tigers kept in the zoos and wildlife sanctuaries. The present study was hence conducted to determine and compare serum chemistry values in tigers of Bengal origin (Panthera tigris tigris kept in captivity at Lahore zoo (LZ (n=4 and in semi natural environment of Lahore Wildlife Park (LWP (n=6, Pakistan. The tigers kept at LZ had significantly (P<0.05 higher mean concentrations of Cl- (108.6±0.57 versus 105.6±0.49 mmol/l and a significantly lower creatinine (1.78±0.06 versus 3.04±0.35mg/dl and AST values (41.66±0.77 versus 54.88±4.22 U/l than tigers kept at LWP. No other significant differences in serum chemistry were observed for both forms of captivity. Results would be useful for the evaluation of physiological and pathological alterations in wild and captive tiger individuals and populations not only in Pakistan but also for other countries harboring the Bengal tigers.

  2. Relative Sea Level Trends Along the Coast of the Bay of Bengal

    Science.gov (United States)

    Becker, M.; Calmant, S.; Papa, F.; Delebecque, C.; Islam, A. S.; Shum, C. K.

    2016-12-01

    In the coastal belt of the Bay of Bengal, the sea level rise is one of a major threat, linked to climate change, which drastically affects the livelihoods of millions of people. A comprehensive understanding of sea level trends and its variability in this region is therefore crucial and should help to anticipate the impacts of climate change and implement adaptation strategies. This region is bordered mostly by Bangladesh, India, Malaysia, Myanmar, and Thailand. Here, we revisit the sea level changes in the Bay of Bengal region from tide gauges and satellite altimetry over the period 1993-2014. The 23 monthly mean tide gauge records, used in this study, are retrieved from PSMSL (15 records) and supplemented with Bangladeshi observations (8 records). We show that, over the satellite altimetry era, the sea level interannual/decadal variability is mainly due to ocean thermal expansion variability driven by IOD/ENSO events and their low frequency modulation. We focus on relative sea level rise at major coastal cities and try to separate the climatic signal (long term trend plus interannual/decadal variability) from local effects, in particular vertical land movements. Results from GPS are analysed where available. When no such data exist, vertical land movements are deduced from the combined use of tide gauge and altimetry data. While the analysis is performed over the whole region, a particular attention is given to the low-lyingBangladesh's coastal area.

  3. An experimental study of radiative fluxes in the south Bay of Bengal during BOBMEX 1999

    Indian Academy of Sciences (India)

    K Gopala Reddy; G Bharathi; A Ravi Kumar; M V Subrahmanyam; K Muni Krishna

    2003-06-01

    Time series measurements of radiative fluxes were made onboard INS Sagardhwani (SD) in the south Bay of Bengal near DS3 (13°N and 87°E) during the BOBMEX field experiment. An inter- comparison experiment conducted at DS3 showed that the radiative fluxes measured by Kipp and Zonen, Albedo meter and net Pyrgeometer onboard SD and by Eppley radiometers onboard ORV Sagar Kanya (SK) are well matched. It may be mentioned that the measurements showed consistency and good agreement between SD and SK ships, even though no Gimbal mounting was used for radiation instruments onboard SD. The main aim of the experiment was collection of high quality radiation data during the monsoon period, which can give an insight into the nature of the ocean-atmosphere coupling. The data on the four radiative fluxes collected on SD are averaged at 5 minute intervals and then hourly and daily averages have been computed. The hourly shortwave albedo and the atmospheric transmission factor are also computed and the variation of albedo in relation to the solar altitude and the transmissivity factor (TF) are studied. The mean albedo over the south Bay of Bengal under clear, partly cloudy and overcast skies are found to be 0.05, 0.07 and 0.2 respectively.

  4. Shift in detrital sedimentation in the eastern Bay of Bengal during the late Quaternary

    Indian Academy of Sciences (India)

    C Prakash Babu; J N Pattan; K Dutta; N Basavaiah; G V Ravi Prasad; D K Ray; P Govil

    2010-06-01

    Down-core variations of granulometric, geochemical and mineral magnetism of a 70-cm long sediment core retrieved from the eastern Bay of Bengal abyssal region were studied to understand sedimentation pattern and sediment provenance during the last ∼12 kyr BP. Based on down-core physical and elemental variations, three units were identified: unit 3 (70–43 cm) is a ∼30 cm thick clayey silt organic carbon-rich (0.5–0.92%) turbidite probably delivered by the Brahmaputra River during the late Quaternary period. Units 2 (43–24 cm) and 1 (24–0 cm) represent enhanced and reduced supply of coarse-grained detrital sediments from the Ganges River during early and late Holocene period, respectively. Increased terrigenous supply dilutes calcium carbonate (CaCO3) and biogenic elements (P, Ba and Cu) in units 3 and 2. On the contrary, a reduction in detrital input enhances CaCO3 and biogenic elements in unit 1. Lithogenic elements (Ti, Al, K and Rb) and shale-normalized REE patterns in all three units suggest terrigenous source. The shift in provenance from the Brahmaputra to the Ganges derived sediments is evident by a sharp increase in sediment grain size, increased concentration and grain size assemblages of magnetic minerals, lithogenic elements concentration and Lan/Ybn ratio. This study highlights terrigenous dilution on biogenic sedimentation in the eastern Bay of Bengal sediments.

  5. Association between prevalence of pyrimethamine resistance and double mutation in pfdhfr gene in West Bengal, India

    Directory of Open Access Journals (Sweden)

    Sabyasachi Das

    2012-02-01

    Full Text Available Objective: To find whether antifolate drug (pyrimethamine resistance has occurred in the two malaria endemic zones (Kolkata and Purulia of West Bengal, India. Methods: Parasitic bloods were collected from patients of Kolkata and Purulia, in vitro susceptibility test were performed in those 90 isolates. Now parasitic DNA was isolated by phenol chloroform extraction method and then polymerase chain reaction and restriction fragment length polymorphism analysis of different codons of pfdhfr gene (51, 59, and 108 were assessed in Plasmodium falciparum isolates from patients in India. Results: Among 45 isolates from Kolkata dhfr mutant isolates at codons 108, 51 and 59 were found in 71.11 %, 100% and 15.55% isolates respectively while in Purulia mutation found in those codons were 42.22%, 57.77% and 0%, respectively. In Kolkata, the isolate having double mutation (N108 + 51I were resistant to pyrimethamine (P < 0.01 whereas in Purulia N108 mutation is occurred with both mixed and mutant 51I mutation. Conclusions: Our present findings implicate that due to enormous drug (pyrimethamine pressure double mutation with dhfr S108N/T and N51I was highly correlated (P < 0.01 with in vitro pyrimethamine resistance in two malaria endemic region of West Bengal. The increase in the number of dhfr mutations was strongly correlated to resistance to pyrimethamine.

  6. Menstruation and menstrual hygiene among adolescent girls of West Bengal, India: A school based comparative study

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    Adrija Datta

    2012-11-01

    Full Text Available Background: Adolescents are often less informed, less experienced, and less comfortable accessing reproductive health information and services than adults. In many developing countries, a culture of silence surrounds the topic of menstruation and related issues; as a result many young girls lack appropriate and sufficient information regarding menstrual hygiene. This may result in incorrect and unhealthy behaviour during their menstrual period. Objectives: To assess and compare knowledge, belief, ideas, source of knowledge and practice of menstrual hygiene between school-going adolescents in an urban and a rural school of West Bengal, India. Methods: Cross-sectional, descriptive study was conducted among adolescent female students of Howrah district of West Bengal, India in the year 2011. Data was collected by pre-designed, pre-tested semi-structured self administered questionnaire. Results: The mean age at menarche was 12.1 years among urban and 12.2 years among the rural participants. More than 80% participants had some restrictions imposed during menstruation. Significantly higher number of urban girls had pre-menarchal knowledge on menstruation and used sanitary napkins. Conclusions: Menstrual hygiene is a vital aspect of health education for adolescent girls. For improvement of menstrual hygiene, sanitary napkins should be made universally available and affordable.

  7. Local Governments in Rural West Bengal, India and their Coordination with Line Departments

    Directory of Open Access Journals (Sweden)

    Bhaskar Chakrabarti

    2011-12-01

    Full Text Available In India, the 73rd constitutional amendment of 1992 decentralises agriculture, irrigation, health, education along with 23 other items to the Panchayats, the village level self-government body. It is envisaged that the three-tier Panchayat system at the District, Block and the Village level would coordinate with different ‘line departments’ of the government for planning various schemes and their implementation. In West Bengal, a state in eastern India, where the Panchayats were revitalised before the constitutional amendment, the initial years were marked by strong coordination between the Panchayats and other departments, especially land and agriculture, making West Bengal a ‘model’ case for the Panchayats. However, where service delivery through the Panchayats has been criticised in recent years, the disjuncture between Panchayats and the line departments is a cause for alarm. In this paper, we search for the causes behind the low level of coordination between government departments and the Panchayat at each tier. We analyse the complex process of organisational coordination that characterises decentralisation, and show how decision making in local governments is nested within various levels of hierarchy. The study focuses on the formal structures of coordination and control with regard to decision-making between the Panchayats and the line departments. We show how these processes work out in practice. These involve lack of role definition, problems of accountability, and politics over access to resources and relations of power within, as well as outside, the Panchayat.

  8. Establishment and cryopreservation of a fibroblast cell line derived from Bengal tiger (Panthera tigris tigris).

    Science.gov (United States)

    Guan, W J; Liu, C Q; Li, C Y; Liu, D; Zhang, W X; Ma, Y H

    2010-01-01

    The Bengal tiger ear marginal tissue fibroblasts cell line (BTF22), containing 157 tubes of frozen cells, was successfully established by using primary explants technique and cell cryoconservation technology. Biological analysis showed that the population doubling time (PDT) for revival cells was approximately 28 h. Measurement of LDH and MDH isoenzymes showed no cross-contamination among the cells. Karyotyping showed that the frequency of cells with chromosome number 2n = 38 was 90.6-92.2%. Tests for bacteria, fungi, viruses and mycoplasma were negative. Plasmids encoding the fluorescent proteins pEGFP-N3, pEGFP-C1, pECFP-N1, pECFP-mito, pDsRed1-N1, and pEYFP-N1 were transfected into cells to study exogenous gene expression in the cells. The plasmid transfection efficiency was between 4.4% and 31.9%. Every index of the BTF22 cell line meets all the standard quality controls of American type Culture Collection (ATCC). Not only has the germline of this important Bengal tiger species been preserved at the cell level, but also valuable material had been provided for genome, postgenome and somacloning research. Moreover, the establishment of this technical platform would provide both technical and theoretical support for storing the genetic resources of other animals and poultry at the cell level.

  9. Profile of Nutrition among 24-59 Months Children in a Rural Area of Bengal, India

    Directory of Open Access Journals (Sweden)

    Mausumi Basu, Kumaresh Chandra Sarkar, Biman Roy, Palash Das, Jayanta Kumar Barua, Sukanta Biswas

    2014-01-01

    Full Text Available Introduction: Globally, 162 million under-five children were suffering from stunting; 99 million from underweight and 51 million from wasting in 2012. The Government of India has introduced NewWHO 2006 Child Growth Standards in India for monitoring growth of children. This study wasconducted with the objective to assess the magnitude of under-nutrition among 24-59 months children in a rural area of West Bengal and some social factors influencing their nutritional status. Materials and methods: A community based cross sectional study was conducted among 360 children of 24 – 59 months in ten randomly selected villages of West Bengal in March 2013 using a predesigned pretested schedule. Results: The prevalence of underweight, stunting and wasting was 49.17%, 59.44% and 20.28% respectively. Boys suffered more than girls in all indicators. The prevalence of under-weight, stunting and wasting was significantly associated with age of the study population, literacy status of parents and socio economic status but not with sex. Conclusion: The problem of under-nutrition amongst under-five children needs to be addressed through comprehensive preventive, promotive, curative and social measures.

  10. Child Immunization and Vitamin A Supplementation in the District of Bankura, West Bengal

    Directory of Open Access Journals (Sweden)

    Nirmal Kumar Mandal

    2011-07-01

    Full Text Available Background: District Health Authority of Bankura in the state of West Bengal desired to estimate the coverage of childhood vaccination and vitamin A prophylaxis by an independent body. To address these issues the present study was undertaken. Objectives: To estimate immunization coverage and vitamin A supplementation in 12-23 months children. Methods: A Cross sectional observational study was conducted in the district of Bankura, West Bengal among children aged between 12-23 months with sample size 320. Study variables were sex, residence, antigen-wise immunization coverage, proportion of fully immunized children, immunization drop-out rate, Vitamin-A (first dose supplementation etc. Coverage was estimated by proportions and Chi-square (c2 was applied as a test of significance. Results: 99.0%, 94.8% and 91.4% of studied children received BCG, DPT-3/OPV-3 and Measles vaccination respectively. 80.3% of children (80.9% male and 79.7% of female were fully immunized. The drop out rate for highest covered antigen dose (DPT1/OPV1 to lowest covered antigen dose (measles was 8.1%. Fully immunized children were found more in rural area (81.7% than the urban area (62.5 of the district. Difference was statistically significant. Almost 92% children received first dose of Vitamin-A. Conclusion: Immunization coverage of Bankura district was higher than that of the state and national figures. Rural coverage is better than urban.

  11. Local Governments in Rural West Bengal, India and their Coordination with Line Departments

    Directory of Open Access Journals (Sweden)

    Bhaskar Chakrabarti

    2011-12-01

    Full Text Available In India, the 73rd constitutional amendment of 1992 decentralises agriculture, irrigation, health, education along with 23 other items to the Panchayats, the village level self-government body. It is envisaged that the three-tier Panchayat system at the District, Block and the Village level would coordinate with different ‘line departments’ of the government for planning various schemes and their implementation. In West Bengal, a state in eastern India, where the Panchayats were revitalised before the constitutional amendment, the initial years were marked by strong coordination between the Panchayats and other departments, especially land and agriculture, making West Bengal a ‘model’ case for the Panchayats. However, where service delivery through the Panchayats has been criticised in recent years, the disjuncture between Panchayats and the line departments is a cause for alarm. In this paper, we search for the causes behind the low level of coordination between government departments and the Panchayat at each tier. We analyse the complex process of organisational coordination that characterises decentralisation, and show how decision making in local governments is nested within various levels of hierarchy. The study focuses on the formal structures of coordination and control with regard to decision-making between the Panchayats and the line departments. We show how these processes work out in practice. These involve lack of role definition, problems of accountability, and politics over access to resources and relations of power within, as well as outside, the Panchayat.

  12. Understanding the Patterns of Antibiotic Susceptibility of Bacteria Causing Urinary Tract Infection in West Bengal, India

    Directory of Open Access Journals (Sweden)

    Sunayana eSaha

    2014-09-01

    Full Text Available Urinary tract infection (UTI is one of the most common infectious diseases at the community level. In order to assess the adequacy of empirical therapy, the susceptibility of antibiotics and resistance pattern of bacteria responsible for UTI in West Bengal, India, were evaluated throughout the period of 2008-2013. The infection reports belonging to all age groups and both sexes were considered. E. coli was the most abundant uropathogen with a prevalence rate of 67.1%, followed by Klebsiella spp. (22% and Pseudomonas spp. (6%. Penicillin was least effective against UTI-causing E. coli and maximum susceptibility was recorded for the drugs belonging to fourth generation cephalosporins. Other abundant uropathogens, Klebsiella spp., were maximally resistant to broad-spectrum penicillin, followed by aminoglycosides and third generation cephalosporin. The antibiotic resistance pattern of two principal UTI pathogens, E. coli and Klebsiella spp. in West Bengal, appears in general to be similar to that found in other parts of the Globe. Higher than 50% resistance were observed for broad-spectrum penicillin. Fourth generation cephalosporin and macrolides seems to be the choice of drug in treating UTIs in Eastern India. Furthermore, improved maintenance of infection incident logs is needed in Eastern Indian hospitals in order to facilitate regular surveillance of the occurrence of antibiotic resistance patterns, since such levels continue to change.

  13. Characterization of Aeromonas trota strains that cross-react with Vibrio cholerae O139 Bengal.

    Science.gov (United States)

    Albert, M J; Ansaruzzaman, M; Shimada, T; Rahman, A; Bhuiyan, N A; Nahar, S; Qadri, F; Islam, M S

    1995-12-01

    It has previously been shown that Vibrio cholerae O139 Bengal shares antigens with V. cholerae serogroups O22 and O155. We detected six surface water isolates of Aeromonas trota that agglutinated in polyclonal antisera to V. cholerae O139 and V. cholerae O22 but not in antiserum to V. cholerae O155. On the basis of agglutinin-absorption studies, the antigenic relationship between the cross-reacting bacteria were found to be in an a,b-a,c fashion, where a is the common antigenic epitope and b and c are unique epitopes. The antigen sharing between A. trota strains and V. cholerae O139 was confirmed in immunoblot studies. However, A. trota strains did not react with two monoclonal antibodies specific for V. cholerae O139 and, consequently, tested negative in the Bengal SMART rapid diagnostic test for V. cholerae O139 which uses one of the monoclonal antibodies. A polyclonal antiserum to a cross-reacting A. trota strain cross-protected infant mice against cholera on challenge with virulent V. cholerae O139. All A. trota strains were cytotoxic for HeLa cells, positive for adherence to HEp-2 cells, and weakly invasive for HEp-2 cells; one strain was heat-stable toxin positive in the suckling mouse assay; however, all strains were negative for cholera toxin-like enterotoxin. Studies on bacteria that share somatic antigen with V. cholerae O139 may shed further light on the genesis of V. cholerae O139.

  14. Periodontal status of a given population of West Bengal: An epidemiological study

    Directory of Open Access Journals (Sweden)

    Debabrata Kundu

    2011-01-01

    Full Text Available Background: This paper presents the prevalence and severity of periodontal disease in a given population of West Bengal and its relationship with their age, sex, socioeconomic status, educational background, and dietary habits. Also, the treatment needs on the basis of Community Periodontal Index of Treatment Needs (CPITN, which might be helpful for future planning of dental services. Materials and Methods: A sample of 22,452 individuals aged 15 years and above was selected using a random cluster sampling from the population. All the subjects sampled were weighed by age, sex, community, income group, educational level, diet pattern, and habitation. The WHO CPITN was used to assess the levels of periodontal condition and treatment needs. Results: Score 2 was most prevalent in all the groups. Periodontal disease is widespread in West Bengal and a positive relation appears to exist between age, sex, socio-economic status, education level, and dietary habits with periodontal status. Comprehensive oral hygiene instruction and dental prophylaxis need to be initiated. Conclusion: The data on periodontal conditions presented in this study are similar to data available from WHO on global oral health. These estimates are important for the future planning of dental services in the state.

  15. Characterization of an Early-Onset, Autosomal Recessive, Progressive Retinal Degeneration in Bengal Cats

    Science.gov (United States)

    Ofri, Ron; Reilly, Christopher M.; Maggs, David J.; Fitzgerald, Paul G.; Shilo-Benjamini, Yael; Good, Kathryn L.; Grahn, Robert A.; Splawski, Danielle D.; Lyons, Leslie A.

    2015-01-01

    Purpose A form of retinal degeneration suspected to be hereditary was discovered in a family of Bengal cats. A breeding colony was established to characterize disease progression clinically, electrophysiologically, and morphologically, and to investigate the mode of inheritance. Methods Affected and related cats were donated by owners for breeding trials and pedigree analysis. Kittens from test and complementation breedings underwent ophthalmic and neuro-ophthalmic examinations and ERG, and globes were evaluated using light microscopy. Results Pedigree analysis, along with test and complementation breedings, indicated autosomal recessive inheritance and suggested that this disease is nonallelic to a retinal degeneration found in Persian cats. Mutation analysis confirmed the disease is not caused by CEP290 or CRX variants found predominantly in Abyssinian and Siamese cats. Ophthalmoscopic signs of retinal degeneration were noted at 9 weeks of age and became more noticeable over the next 4 months. Visual deficits were behaviorally evident by 1 year of age. Electroretinogram demonstrated reduced rod and cone function at 7 and 9 weeks of age, respectively. Rod responses were mostly extinguished at 14 weeks of age; cone responses were minimal by 26 weeks. Histologic degeneration was first observed at 8 weeks, evidenced by reduced photoreceptor numbers, then rapid deterioration of the photoreceptor layer and, subsequently, severe outer retinal degeneration. Conclusions A recessively inherited primary photoreceptor degeneration was characterized in the Bengal cat. The disease is characterized by early onset, with histologic, ophthalmoscopic, and electrophysiological signs evident by 2 months of age, and rapid progression to blindness. PMID:26258614

  16. Pandemic management and developing world bioethics: bird flu in West Bengal.

    Science.gov (United States)

    Chakraborti, Chhanda

    2009-12-01

    This paper examines the case of a recent H5N1virus (avian influenza) outbreak in West Bengal, an eastern state of India, and argues that poorly executed pandemic management may be viewed as a moral lapse. It further argues that pandemic management initiatives are intimately related to the concept of health as a social 'good' and to the moral responsibility of protection from foreseeable social harm from an infectious disease. The initiatives, therefore, have to be guided by special moral obligations towards biorisk reduction, obligations which remain unfulfilled when a public body entrusted with the responsibility fails to manage satisfactorily the prevention and control of the infection. The overall conclusion is that pandemic management has a moral dimension. The gravity of the threat that fatal infectious diseases pose for public health creates special moral obligations for public bodies in pandemic situations. However, the paper views the West Bengal case as a learning opportunity, and considers the lapses cited as challenges that better, more effectively conducted pandemic management can prepare for. It is hoped that this paper will provoke constructive bioethical deliberations, particularly pertinent to the developing world, on how to ensure that the obligations towards health are fulfilled ethically and more effectively.

  17. Inertial-Dissipation flux measurements over south Bay of Bengal during BOBMEX— Pilot experiment

    Indian Academy of Sciences (India)

    M Venkataramana; K SenGupta; G S Bhat; S Ameenulla; J V S Raju

    2000-06-01

    This paper describes measurement of air-sea parameters and estimation of sensible and latent heat fluxes by the ``Inertial-Dissipation'' technique over south Bay of Bengal. The data were collected on ORV Sagar Kanya during BOBMEX-Pilot cruise during the period 23rd October 1998 to 12th November 1998 over south Bay of Bengal. The fluxes are estimated using the data collected through fast response sensors namely Gill anemometer, Sonic anemometer and IR Hygrometer. In this paper the analyses carried out for two days, one relatively cloud free day on November 3rd and the other cloudy with rain on November 1st, are presented. Sea surface and air temperatures are higher on November 3rd than on November 1st. Sensible heat flux for both the days does not show any significant variation over the period of estimation, whereas latent heat flux is more for November 3rd than November 1st. An attempt is made to explain the variation of latent heat flux with a parameter called thermal stability on the vapor transfer from the water surface, which depends on wind speed and air to sea surface temperature difference.

  18. Dental Practice Scenario in a Government Homeopathic Hospital in West Bengal, India.

    Science.gov (United States)

    Ghosh, Shubhamoy; Panja, Shamik; Ghosh, Tarak Nath; Sharma, Pawan; Sarkar, Piyali; Koley, Munmun; Saha, Subhranil

    2014-07-01

    This pilot investigation initiated a research-targeted systematic dental homeopathy data collection in the dental outpatient section in a government homeopathic hospital in West Bengal, India. One conventionally trained dentist and 3 homeopathic doctors collected data from 949 appointments of 411 patients over 3 months. A specifically designed Excel spreadsheet enabled recording of consecutive dental appointments that was subjected to data synthesis and analysis in the end. A total of 87.3% conditions were chronic, and chronic periodontitis was most frequent (27.5%). Positive outcome was observed in 72.3% appointments. Strongly positive outcomes (scores of +2 or +3) were achieved most notably in toothache (84.6%). Single medicines were prescribed in 83.5% encounters, and mostly in tincture form (29.9%). Arnica montana constituted of 17.8% prescriptions. Considerable insight was gained into the homeopathic dental practice scenario in West Bengal, India. Positive findings suggest that dental homeopathy is a promising area for research in near future.

  19. Compact q-gram profiling of compressed strings

    DEFF Research Database (Denmark)

    Bille, Philip; Cording, Patrick Hagge; Gørtz, Inge Li

    2014-01-01

    We consider the problem of computing the q-gram profile of a string T of size N compressed by a context-free grammar with n production rules. We present an algorithm that runs in O(N−α) expected time and uses O(n+q+kT,q) space, where N−α≤qnN−α≤qn is the exact number of characters decompressed...... by the algorithm and kT,q≤N−α is the number of distinct q-grams in T . This simultaneously matches the current best known time bound and improves the best known space bound. Our space bound is asymptotically optimal in the sense that any algorithm storing the grammar and the q-gram profile must use Ω...

  20. Compact q-gram Profiling of Compressed Strings

    DEFF Research Database (Denmark)

    Bille, Philip; Cording, Patrick Hagge; Gørtz, Inge Li

    2013-01-01

    We consider the problem of computing the q-gram profile of a string T of size N compressed by a context-free grammar with n production rules. We present an algorithm that runs in O(N − α) expected time and uses O(n + k T , q ) space, where N − α ≤ qn is the exact number of characters decompressed...... by the algorithm and k T , q  ≤ N − α is the number of distinct q-grams in T . This simultaneously matches the current best known time bound and improves the best known space bound. Our space bound is asymptotically optimal in the sense that any algorithm storing the grammar and the q-gram profile must use Ω(n + k...

  1. Sedimentology and arsenic pollution in the Bengal Basin: insight into arsenic occurrence and subsurface geology.

    Science.gov (United States)

    Hills, Andrew; McArthur, John

    2014-05-01

    The Bengal delta system is a geologically recent feature overlying a deeply incised palaeo-surface formed during the Last Glacial Maximum. This surface is a series of terraces and valleys created by river incision (Goodbred & Kuehl 2003). The terraces were weathered, forming a thin, indurated laterite deposit (Goodbred & Kuehl 2000) at depths greater than 50 m. McArthur et al. (2008) define this as a palaeosol and have identified it at depths greater than 30 m though out Bangladesh and West Bengal. It has been observed that arsenic concentrations at these sites are lower than the rest of the delta. It has been assumed that the surface morphology at sites where there is a palaeosol are similar and can therefore be characterised by remote sensing, in the form of Google Earth images. Sites were selected in Bangladesh and West Bengal, from work by McArthur et al. (2011); Hoque et al. (2012), where groundwater chemistry and sedimentology data are available making it possible to determine if the subsurface is a palaeo-channel or palaeo-interfluve. Arsenic concentration data have been inputted into Google Earth and the palaeo-channels marked where the arsenic concentration is greater than 10 µg/L, and palaeo-interfluves where arsenic concentration is less than 10 µg/L. The surface morphologies in these domains have been examined for similarities, and it was shown that avulsion scars and abandoned river channels are found where arsenic concentrations are greater than 10 µg/L. Conversely the surrounding areas that are devoid of channel scars have arsenic concentrations less than 10 µg/L. Using the correlation between avulsion features being representative of palaeo-channels and high arsenic concentrations, sites were selected that had a similar surface morphology to the type localities. A comparison of these images and arsenic concentrations showed that the postulate is valid for over 80 percent of cases. Where this is not valid, this could indicate that the subsurface

  2. Glycosaminoglycans are involved in pathogen adherence to corneal epithelial cells differently for Gram-positive and Gram-negative bacteria

    Directory of Open Access Journals (Sweden)

    Beatriz García

    2016-11-01

    Full Text Available The epithelium of the cornea is continuously exposed to pathogens, and adhesion to epithelial cells is regarded as an essential first step in bacterial pathogenesis. In this article, the involvement of glycosaminoglycans in the adhesion of various pathogenic bacteria to corneal epithelial cells is analyzed. All microorganisms use glycosaminoglycans as receptors, but arranged in different patterns depending on the Gram-type of the bacterium. The heparan sulfate chains of syndecans are the main receptors, though other molecular species also seem to be involved, particularly in Gram-negative bacteria. Adherence is inhibited differentially by peptides, including heparin binding sequences, indicating the participation of various groups of Gram-positive and -negative adhesins. The length of the saccharides produces a major effect, and low molecular weight chains inhibit the binding of Gram-negative microorganisms but increase the adherence of Gram-positives. Pathogen adhesion appears to occur preferentially through sulfated domains, and is very dependent on N- and 6-O-sulfation of the glucosamine residue and, to a lesser extent, 2-O sulfation of uronic acid. These data show the differential use of corneal receptors, which could facilitate the development of new anti-infective strategies.

  3. The fauna of brackish ponds at Port Canning, Lower Bengal Part 1 - Introduction and Preliminary Account of the Fauna

    Digital Repository Service at National Institute of Oceanography (India)

    Annandale, N.

    A general survey the fauna of brackishwater ponds at Port Canning, Lower Bengal, India, was carried out The Port Canning is situated on the Matla river having numerous creeks which runup into the delta of the Ganges about sixty miles from the open...

  4. Five years of coastal sea level monitoring in the Bay of Bengal with CryoSat-2

    DEFF Research Database (Denmark)

    Andersen, Ole Baltazar

    A continuous monitoring of sea level is particularly necessary along the coastal zones as these areas are the most exposed to flooding and storm surges that dramatically affect local economy and society. The aim of this project is to study the annual sea level variability in the Bay of Bengal...

  5. The increasing impact of food production on nutrient export by rivers to the Bay of Bengal 1970–2050

    NARCIS (Netherlands)

    Sattar, M.A.; Kroeze, C.; Strokal, M.

    2014-01-01

    The objective of this study is to assess the impact of food production on river export of nutrients to the coastal waters of the Bay of Bengal in the past (1970 and 2000) and the future (2030 and 2050), and the associated potential for coastal eutrophication. We model nutrient export from land to se

  6. Observed year-to-year sea surface salinity variability in the Bay of Bengal during the 2009–2014 period

    Digital Repository Service at National Institute of Oceanography (India)

    Chaitanya, A.V.S.; Durand, F.; Mathew, S.; Gopalakrishna, V.V.; Papa, F.; Lengaigne, M.; Vialard, J.; KranthiKumar, C.; Venkatesan, R.

    The present study describes the observed sea surface salinity (SSS) interannual variability in the Bay of Bengal over the 2009–2014 period. It is based on an original compilation of all available in situ SSS observations in that region, assembled...

  7. Coupling between suboxic condition in sediments of the western Bay of Bengal and southwest monsoon intensification: A geochemical study

    Digital Repository Service at National Institute of Oceanography (India)

    Pattan, J.N; Mir, I.A; Parthiban, G.; Karapurkar, S.G.; Matta, V.M.; Naidu, P.D.; Naqvi, S.W.A

    Reconstruction of paleo-redox conditions in a radiocarbon (14C) dated sediment core (SK-218/1), covering the past 45 ka (thousand calendar years), collected from the western Bay of Bengal (Lat: 14 degrees 02′N; Long: 82 degrees 00′E) at a water...

  8. The ocean floor morphostructure of the Bay of Bengal (Indian Ocean) and the problem of its origin

    Science.gov (United States)

    Illarionov, V. K.; Boyko, A. N.; Udintsev, G. B.

    2016-05-01

    This study is based on the geological and geophysical data obtained in the Bay of Bengal and adjacent part of the Mid-Indian Ocean Basin by different Russian scientific and industrial institutions in the 1980s and 1990s. The results of the more recent foreign investigations are also involved. The analysis of the collected data provided a new insight into the geological structure and evolution of the region indicating that a large dry-land area—the Bengal elevation—existed in the Cretaceous at the location of the present-day Bay of Bengal. During the Cretaceous, the geological evolution of this area was controlled by epicontinental sedimentation and active volcanism. In the Late Cretaceous, progressive submersion with the inception of the Central Basin took place in the region. The subsidence of the basement was accompanied by active differentiated tectonic movements in the southern part of the Bay of Bengal. As a result, the basement experienced fragmentation into blocks with the formation of horst and graben structures. The horst relics eventually submerged to the current depths in the Late Miocene-Pliocene. The maximal amplitude of basement submersion within the bay is more than 11 km.

  9. Tectonics of the Bay of Bengal: New insights from satellite-gravity and ship-borne geophysical data

    Digital Repository Service at National Institute of Oceanography (India)

    Subrahmanyam, C.; Thakur, N.K.; Rao, T.G.; Khanna, R.; Ramana, M.V.; Subrahmanyam, V.

    the Rajmahal and Sylhet Traps and volcanics in the Bengal and Mahanadi basins, almost on the scale of the Deccan volcanic province along the west coast, can be envisaged taking into account the occurrences of intrusive rocks around the age of 117 Ma. Gravity...

  10. Utilization of high resolution satellite geoid data for estimation of lithospheric thickness in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Majumdar, T.J.; Bhattacharyya, R.; Chatterjee, S.; Krishna, K.S.

    height anomalies have been analyzed across the Ninetyeast and 85 degrees E Ridges within the Bay of Bengal. Present data sets are more accurate and detailed (off-track resolution: about 3.33 km and grid size: about 3.5 km). Observed geoid height - age...

  11. Past 20,000-year history of Himalayan aridity: Evidence from oxygen isotope records in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Chauhan, O.S.

    Late Quaternary climate history of the Himalayas is inferred from sea surface salinity (SSS) changes determined from the oxygen isotope in planktonic foraminifers, in a turbidity-free, 14C-dated core from the Bay of Bengal. The heaviest d18O...

  12. Thermal response of upper layers of Bay of Bengal to forcing of a severe cyclonic storm: A case study

    Digital Repository Service at National Institute of Oceanography (India)

    Gopalakrishna, V.V.; Murty, V.S.N.; Sarma, M.S.S.; Sastry, J.S.

    Upper ocean response to forcing of a severe cyclonic storm during May 1990 in the western Bay of Bengal was studied using the XBT data sets collected (4 d after passage of storm) under Indian TOGA programme. A maximum lowering in the sea surface...

  13. Impact of Ganges–Brahmaputra interannual discharge variations on Bay of Bengal salinity and temperature during 1992–1999 period

    Indian Academy of Sciences (India)

    Fabien Durand; Fabrice Papa; Atiqur Rahman; Sujit Kumar Bala

    2011-10-01

    This study investigates the impact of monthly Ganges–Brahmaputra river discharge variations on Bay of Bengal salinity and temperature during the period 1992–1999. The Ganges–Brahmaputra river discharge is characterized by a well-defined seasonal cycle with strong interannual variations. The highest/lowest yearly peak discharge occurs in summer 1998/summer 1992, with 1998 value amounting to twice that of 1992. This river discharge is then used to force an ocean general circulation model. Our main result is that the impact of these rivers on the variability of Bay of Bengal sea surface salinity is strong in the northern part, with excess run-off forcing fresh anomalies, and vice versa. Most of the years, the influence of the interannual variability of river discharge on the Bay salinity does not extend south of ∼10° N. This stands in contrast with the available observations and is probably linked to the relatively coarse resolution of our model. However, the extreme discharge anomaly of 1998 is exported through the southern boundary of the Bay and penetrates the south-eastern Arabian Sea a few months after the discharge peak. In response to the discharge anomalies, the model simulates significant mixed-layer temperature anomalies in the northern Bay of Bengal. This has the potential to influence the climate of the area. From our conclusions, it appears necessary to use a numerical model with higher resolution (both on the horizontal and vertical) to quantitatively investigate the upper Bay of Bengal salinity structure.

  14. Differences in heat budgets of the near-surface Arabian Sea and Bay of Bengal: Implications for the summer monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Shenoi, S.S.C.; Shankar, D.; Shetye, S.R.

    An analysis of the heat budgets of the near-surface Arabian Sea and Bay of Bengal shows significant differences between them during the summer monsoon (June-September). In the Arabian Sea the winds associated with the summer monsoon are stronger...

  15. On the level of least motion and the circulation in the upper layers of the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Varadachari, V.V.R.; Murty, C.S.; Das, P

    The paper presents the circulation pattern in the upper 500 metres of the western Bay of Bengal between 9 degrees N and 16 degrees N during the south-west monsoon period, based on the geo-potential anomalies computed from the hydrographic data...

  16. On the occurrence of ferromanganese micronodules from the sediments of the Bengal Fan: A high terrigenous sediment input region

    Digital Repository Service at National Institute of Oceanography (India)

    Chauhan, O.S.; Gujar, A.R.; Rao, Ch.M.

    Studies of 13 samples (10 surface sediments and 3 cores) from across the middle fan region of the Bay of Bengal reveal the presence of micronodules (area 0.22 million km@u2@@) over the entire bay. These micronodules have two dominant morphological...

  17. Salinity maxima associated with some sub-surface water masses in the upper layers of the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Varadachari, V.V.R.; Murty, C.S.; Reddy, C.V.G.

    The distribution of some sub-surface water masses in the western bay of Bengal during the south-west monsoon period is presented. Based on the salinity maxima and sigma t values the existence of waters of Persian Gulf and Red Sea origin could...

  18. Hydrographical features of the southern and central Bay of Bengal during the transition period between winter and summer

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, L.V.G.; Jayaraman, R.

    mass, which resembles the "Southern Bay of Bengal Water" with the salinity range 33.0-34.0 ppt and sigma t range 21.0-22.0 is identified in the upper 100 metres of the Southern Bay and the western and middle parts of the Central Bay. Throughout...

  19. Corrosion of metals and alloys in the coastal and deep waters of the Arabian Sea and the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Venkat, K.; Wagh, A.B.

    Corrosion rate of mild steel (MS), stainless steel (SS), copper, brass and cupro-nickel has been determinEd. by exposing metallic coupons in coastal and oceanic waters of the Arabian Sea and Bay of Bengal. Amongst the metals and alloys under study...

  20. Acoustic propagations in the presence of a subsurface cold core eddy in the Bay of Bengal - A case study

    Digital Repository Service at National Institute of Oceanography (India)

    PrasannaKumar, S.; Navelkar, G.S.; Murty, T.V.R.; Murty, C.S.

    Acoustic characteristics of a cold core eddy, observed in the Bay of Bengal during southwest monsoon period is studied using CTD data along the western boundary. The presence of eddy brings about a reduction in the ambient sound speEd. by 10 m.s sup...

  1. Simulation of barotropic wind-driven circulation in tbe Bay of Bengal and Andaman Sea during premonsoon and postmonsoon seasons

    Digital Repository Service at National Institute of Oceanography (India)

    Unnikrishnan, A.S.; Bahulayan, N.

    Two-dimensional vertically integrated model has been used to simulate depth-mean wind-driven circulation during premonsoon and postmonsoon seasons in the upper layers of the Bay of Bengal and Andaman Sea. The model is integrated for 365 d, forcEd...

  2. Una gramática general de la superficie musical

    OpenAIRE

    Fessel, Pablo

    1996-01-01

    La gramática musical tiene la forma de un conjunto de componentes que asignan, a una obra musical,una descripción estructural apropiada. Esa descripción estructural representa las propiedades estructurales de una obra en diferentes niveles (denominados niveles de representación), para cada uno de los cuales la gramática define un cierto número de unidades mínimas (primitivos), y ciclicas reglas y/o principios sintácticos que los afectan de uno u otro modo (por ejemplo, que establecen sus comb...

  3. Multidrug-Resistant Gram-Negative Bacilli: Infection Control Implications.

    Science.gov (United States)

    Adler, Amos; Friedman, N Deborah; Marchaim, Dror

    2016-12-01

    Antimicrobial resistance is a common iatrogenic complication of both modern life and medical care. Certain multidrug resistant and extensively drug resistant Gram-negative organisms pose the biggest challenges to health care today, predominantly owing to a lack of therapeutic options. Containing the spread of these organisms is challenging, and in reality, the application of multiple control measures during an evolving outbreak makes it difficult to measure the relative impact of each measure. This article reviews the usefulness of various infection control measures in containing the spread of multidrug-resistant Gram-negative bacilli. Copyright © 2016 Elsevier Inc. All rights reserved.

  4. Cellular reprogramming by gram-positive bacterial components: a review.

    LENUS (Irish Health Repository)

    Buckley, Julliette M

    2012-02-03

    LPS tolerance has been the focus of extensive scientific and clinical research over the last several decades in an attempt to elucidate the sequence of changes that occur at a molecular level in tolerized cells. Tolerance to components of gram-positive bacterial cell walls such as bacterial lipoprotein and lipoteichoic acid is a much lesser studied, although equally important, phenomenon. This review will focus on cellular reprogramming by gram-positive bacterial components and examines the alterations in cell surface receptor expression, changes in intracellular signaling, gene expression and cytokine production, and the phenomenon of cross-tolerance.

  5. Mechanisms of Antimicrobial Peptide Resistance in Gram-Negative Bacteria

    Directory of Open Access Journals (Sweden)

    Victor I. Band

    2014-12-01

    Full Text Available Cationic antimicrobial peptides (CAMPs are important innate immune defenses that inhibit colonization by pathogens and contribute to clearance of infections. Gram-negative bacterial pathogens are a major target, yet many of them have evolved mechanisms to resist these antimicrobials. These resistance mechanisms can be critical contributors to bacterial virulence and are often crucial for survival within the host. Here, we summarize methods used by Gram-negative bacteria to resist CAMPs. Understanding these mechanisms may lead to new therapeutic strategies against pathogens with extensive CAMP resistance.

  6. The COHERENT Methodology in FunGramKB

    Directory of Open Access Journals (Sweden)

    Carlos Periñán-Pascual

    2011-12-01

    Full Text Available Recent research has been done synergistically between FunGramKB, a lexical-conceptual knowledge base, and the Lexical Constructional Model, a linguistic meaning construction model. since concepts are claimed to play an important role in the design of the cognitive-linguistic interface, this paper discusses the methodology adopted in structuring the basic conceptual level in the FunGramKB Core Ontology. more particularly, we describe our four-phase COHERENT methodology (i.e. COnceptualization + HiErarchization + REmodelling + refinemeNT, which guided the cognitive mapping of the defining vocabulary in Longman Dictionary of Contemporary English.

  7. New technique using ( sup 125 I)labeled rose bengal for the quantification in blood samples of pipecuronium bromide, a muscle relaxant drug

    Energy Technology Data Exchange (ETDEWEB)

    Schopfer, C.; Benakis, A.; Pittet, J.-F.; Tassonyi, E. (Centre Medical Universitaire, Geneva (Switzerland))

    1991-05-01

    A new technique involving the use of ({sup 125}I)labeled rose bengal for the quantification of pipecuronium bromide (a muscle relaxant drug) is presented. This technique, which is based on the ability of rose bengal to react with pipecuronium and then form a complex which can be extracted into an organic solvent, involves two steps: the purification and labeling of rose bengal with {sup 125}I, and the quantification of pipecuronium. The specific activity of the compound (106 {mu}Ci/mg) allows for the quantification of pipecuronium in biological samples at concentrations as low as 5 ng/ml. (author).

  8. 环糊精对鹰嘴豆异黄酮的包合作用%Inclusion of Cyclodextrin with Cicer Arietinum Isoflavones

    Institute of Scientific and Technical Information of China (English)

    肖飞; 赵曙辉; 黄芳; 王俊

    2011-01-01

    用研磨法制备β-环糊精(β-CD)及羟丙基-β-环糊精(HP-β-CD)与鹰嘴豆异黄酮(CAI)的包合物,由红外吸收光谱对包合物进行表征,并运用紫外分光光度法测试包合体系吸光度的变化.根据Bencsi-Hildebrand方程确定了包合反应的表观包合稳定常数Kθi和包合反应的热力学参数△Gθ,△Hθ和△Sθ,并由此得出包合反应主要由焓变控制,推动力为范德华力.%The inclusion complexes of ,β- cyclodextrin(β- CD) and hydroxypropyl -β- cyclodcxtrin( HP -β-CD) with cicer arietinum isoflavones(CAI) were prepared by the grinding method and characterized by infrarcd absorption spectrum, the changes of absorbance were measured by UV absorption spectrum.The inclusion equilibrium constant(K0f)of inclusion complex was determined by Benesi-Hildcbrand equation and the thermodynamic parameters of the inclusion reaction, such as △G0, △H0 and △Sθ were obtained from the inclusion constants at different temperatures.The whole inclusion proccss was controlled mainly by enthalpy and driven by Van Der Waals Forces.

  9. Isolation, cytotoxic evaluation, and simultaneous quantification of eight bioactive secondary metabolites from Cicer microphyllum by high-performance thin-layer chromatography.

    Science.gov (United States)

    Dar, Alamgir A; Rath, Santosh K; Qaudri, Afnan; Singh, Buddh; Tasduq, Sheikh A; Kumar, Anil; Sangwan, Payare L

    2015-12-01

    Chemical investigation of Cicer microphyllum resulted in the isolation and characterization of eight natural products viz. Stigmasterol, Oleanolic acid-3-acetate, Oleanolic acid, Biochanin A, Genistein, Pratensein, Chrysoeriol, and Luteolin. Herein, we report a novel, accurate, and cost-effective high-performance thin-layer chromatography method for the simultaneous quantification of the isolated natural products on silica-gel 60F254 plates using the solvent system n-hexane/ethyl acetate/formic acid (9.0:6.5:0.8, v/v/v). Natural products were quantified after postchromatographic derivatization with ceric ammonium sulfate. The method was validated as per the International Conference on Harmonization guidelines. All calibration curves showed a good linear relationship (r > 0.9943) within the test range. Precision was assessed by intra- and interday tests with relative standard deviations <1.82%, accuracy validation recovery 98.38-99.57% with relative standard deviations <1.00%. On quantification, Pratensein was a major constituent (0.921%). The screening for cytotoxic activity using a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay resulted into identification of Luteolin as potent molecule with IC50 3.5 and 25.6 μg/mL against murine melanoma and human epidermoid carcinoma cell lines, respectively. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  10. Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population.

    Science.gov (United States)

    Pirovano, Walter; Miozzi, Laura; Boetzer, Marten; Pantaleo, Vitantonio

    2014-01-01

    Over the past years deep sequencing experiments have opened novel doors to reconstruct viral populations in a high-throughput and cost-effective manner. Currently a substantial number of studies have been performed which employ next generation sequencing techniques to either analyze known viruses by means of a reference-guided approach or to discover novel viruses using a de novo-based strategy. Taking advantage of the well-known Cymbidium ringspot virus we have carried out a comparison of different bioinformatics tools to reconstruct the viral genome based on 21-27 nt short (s)RNA sequencing with the aim to identify the most efficient pipeline. The same approach was applied to a population of plants constituting an ancient variety of Cicer arietinum with red seeds. Among the discovered viruses, we describe the presence of a Tobamovirus referring to the Tomato mottle mosaic virus (NC_022230), which was not yet observed on C. arietinum nor revealed in Europe and a viroid referring to Hop stunt viroid (NC_001351.1) never reported in chickpea. Notably, a reference sequence guided approach appeared the most efficient in such kind of investigation. Instead, the de novo assembly reached a non-appreciable coverage although the most prominent viral species could still be identified. Advantages and limitations of viral metagenomics analysis using sRNAs are discussed.

  11. COMPORTAMIENTO AGRONÓMICO DE CULTIVARES DE GARBANZO (Cicer arietinum L., EN CONDICIONES DEL MUNICIPIO LOS PALACIOS, PINAR DEL RÍO

    Directory of Open Access Journals (Sweden)

    Anayza Echevarría

    2014-01-01

    Full Text Available Se realizó un estudio sobre el comportamiento de cinco líneas de garbanzo (Cicer arietinum L., procedentes del Instituto de Investigaciones en Áreas Secas (ICARDA, de la República Árabe de Siria, para las condiciones del municipio Los Palacios. La siembra se realizó en diciembre del año 2008. Se empleó un diseño experimental de bloques al azar con tres repeticiones, utilizando tres variedades nacionales como testigos. Se evaluó altura de las plantas (cm, número de ramas/planta, número de vainas/planta, vainas llenas y vainas vanas por planta, peso de 100 granos (g, rendimiento agrícola (t.ha-1 y la incidencia de enfermedades (%. Los valores obtenidos se analizaron mediante un ANOVA simple y las medias se compararon a través de la prueba de Tukey. Los resultados indicaron que todas las líneas respondieron a las exigencias edafoclimáticas del lugar. Se destacan las líneas 1 y 3 con mejor comportamiento en todos los caracteres evaluados y en el rendimiento, que superó las 2 t.ha-1, y fueron altamente resistentes a la fusariosis.

  12. Biostimulation of soil polluted 10000 ppm of waste motor oil and phytoremediation with Cicer arietinum improved by Bacillus cereus/Rhizobium etli

    Directory of Open Access Journals (Sweden)

    Juárez-Cisneros Gladys

    2016-08-01

    Full Text Available Soil pollution by waste motor oil (WMO is reducing its productivity. An alternative for removing WMO from soil is by biostimulation (BIS applying animal manure and then phytoremediation (PR by legume improving with plant growth promoting bacteria (PGPB to reduce WMO concentration at level below 4400 ppm limit permit for the NOM-138-SEMARNAT/SSA1-2012 (NOM-138. The aims of this re-search were: i to analyze soil biostimulation polluted by 10000 ppm of WMO applying vermicompost, then subsequent soil phytoremediation with Cicer arietinum inoculated by Bacillus cereus and/or Rhizo-bium etli. In soil after applying BS by VC was measured WMO soil concentration and ii for PR was regarded phenology and biomass of C. arietinum and WMO concentration remaining at the end of this step. The results showed that soil biostimulated by VC, WMO was reduced at 1370 ppm, subsequent PR sowing C. arietinum with R. etli, WMR was reduced at 30 ppm concentration both values below to maxi-mum value accepted by NOM-138. Those data indicate that in soil polluted by WMO the best way to biorecovery soil was to integrate strategy BS/PR the last one improved by genus of PGPB.

  13. Studies on the development of infant foods from plant protein sources. Part II. Effect of processing conditions on the chemical and nutritive properties of chickpea (Cicer arietinum).

    Science.gov (United States)

    Khaleque, A; Elías, L G; Braham, J E; Bressani, R

    1985-09-01

    In order to improve the taste, flavor and nutritional quality of chickpea (Cicer arietinum), various processing conditions were studied. The decorticated samples were processed under various conditions, either by presoaking or non-soaking in water or sodium carbonate solution. The proteins were also isolated from water or carbonate-presoaked chickpea and subjected to various processing. Carbonate-presoaked samples gave slightly lower protein and ash values. No major changes in other constituents were observed. Subjective analysis of the intensity of characteristic chickpea flavor in processed samples was carried out, indicating some improvement in the carbonate-presoaked samples. Carbonate-treated samples exhibited a lighter color. The carbonate presoaking procedure had no adverse effect on the availability of lysine and nitrogen solubility index (NSI), as compared to the water-presoaking procedure. The time required to inactivate trypsin inhibitors in carbonate-presoaked chickpea at boiling temperature, was half that required in the case of water-presoaked ones. Under the conditions used in treating chickpea with sodium carbonate, no beneficial effect was observed in reducing the tannin content. No significant differences were observed in net protein ratio (NPR) among the various processed chickpea samples, even though in some cases isolated protein gave significantly lower NPR values. Digestibility values were higher for isolated protein than for whole chickpea samples.

  14. Pre-sowing static magnetic field treatment for improving water and radiation use efficiency in chickpea (Cicer arietinum L.) under soil moisture stress.

    Science.gov (United States)

    Mridha, Nilimesh; Chattaraj, Sudipta; Chakraborty, Debashis; Anand, Anjali; Aggarwal, Pramila; Nagarajan, Shantha

    2016-09-01

    Soil moisture stress during pod filling is a major constraint in production of chickpea (Cicer arietinum L.), a fundamentally dry land crop. We investigated effect of pre-sowing seed priming with static magnetic field (SMF) on alleviation of stress through improvement in radiation and water use efficiencies. Experiments were conducted under greenhouse and open field conditions with desi and kabuli genotypes. Seeds exposed to SMF (strength: 100 mT, exposure: 1 h) led to increase in root volume and surface area by 70% and 65%, respectively. This enabled the crop to utilize 60% higher moisture during the active growth period (78-118 days after sowing), when soil moisture became limiting. Both genotypes from treated seeds had better water utilization, biomass, and radiation use efficiencies (17%, 40%, and 26% over control). Seed pre-treatment with SMF could, therefore, be a viable option for chickpea to alleviate soil moisture stress in arid and semi-arid regions, helping in augmenting its production. It could be a viable option to improve growth and yield of chickpea under deficit soil moisture condition, as the selection and breeding program takes a decade before a tolerant variety is released. Bioelectromagnetics. 37:400-408, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  15. Effects of salinity and ozone, individually and in combination, on the growth and ion contents of two chickpea (Cicer arietinum L.) varieties

    Energy Technology Data Exchange (ETDEWEB)

    Welfare, Karen; Yeo, A.R.; Flowers, T.J

    2002-12-01

    Plants exposed to ozone, under high salinity conditions, further decline in growth. - The aim of this study was to determine the effects of ozone and salinity, singly and in combination, on the growth and ion contents of two chickpea (Cicer arietinum L.) varieties. Chickpea plants were grown in non-saline and saline conditions, with and without a repeated exposure to ozone. Salinity at a concentration of 30 mM NaCl caused a substantial reduction in plant height, number of leaves and the dry weights of the leaves, stems and roots. Biomass allocation to the leaves increased, predominantly at the expense of the roots. Ozone at a concentration of 85 nmol mol{sup -1} for 6 h per day for 25 days reduced plant height and dry weights but had no effect on leaf number. The results show substantial effects of salinity and ozone on chickpea growth and ion concentrations. When ozonated plants are grown in the presence of salinity, further reductions in growth occur.

  16. Genome-wide identification and tissue-specific expression analysis of UDP-glycosyltransferases genes confirm their abundance in Cicer arietinum (Chickpea) genome.

    Science.gov (United States)

    Sharma, Ranu; Rawat, Vimal; Suresh, C G

    2014-01-01

    UDP-glycosyltransferases (EC 2.4.1.x; UGTs) are enzymes coded by an important gene family of higher plants. They are involved in the modification of secondary metabolites, phytohormones, and xenobiotics by transfer of sugar moieties from an activated nucleotide molecule to a wide range of acceptors. This modification regulates various functions like detoxification of xenobiotics, hormone homeostasis, and biosynthesis of secondary metabolites. Here, we describe the identification of 96 UGT genes in Cicer arietinum (CaUGT) and report their tissue-specific differential expression based on publically available RNA-seq and expressed sequence tag data. This analysis has established medium to high expression of 84 CaUGTs and low expression of 12 CaUGTs. We identified several closely related orthologs of CaUGTs in other genomes and compared their exon-intron arrangement. An attempt was made to assign functional specificity to chickpea UGTs by comparing substrate binding sites with experimentally determined specificity. These findings will assist in precise selection of candidate genes for various applications and understanding functional genomics of chickpea.

  17. Genotype and growing environment interaction shows a positive correlation between substrates of raffinose family oligosaccharides (RFO) biosynthesis and their accumulation in chickpea ( Cicer arietinum L.) seeds.

    Science.gov (United States)

    Gangola, Manu P; Khedikar, Yogendra P; Gaur, Pooran M; Båga, Monica; Chibbar, Ravindra N

    2013-05-22

    To develop genetic improvement strategies to modulate raffinose family oligosaccharides (RFO) concentration in chickpea ( Cicer arietinum L.) seeds, RFO and their precursor concentrations were analyzed in 171 chickpea genotypes from diverse geographical origins. The genotypes were grown in replicated trials over two years in the field (Patancheru, India) and in the greenhouse (Saskatoon, Canada). Analysis of variance revealed a significant impact of genotype, environment, and their interaction on RFO concentration in chickpea seeds. Total RFO concentration ranged from 1.58 to 5.31 mmol/100 g and from 2.11 to 5.83 mmol/100 g in desi and kabuli genotypes, respectively. Sucrose (0.60-3.59 g/100 g) and stachyose (0.18-2.38 g/100 g) were distinguished as the major soluble sugar and RFO, respectively. Correlation analysis revealed a significant positive correlation between substrate and product concentration in RFO biosynthesis. In chickpea seeds, raffinose, stachyose, and verbascose showed a moderate broad sense heritability (0.25-0.56), suggesting the use of a multilocation trials based approach in chickpea seed quality improvement programs.

  18. Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines.

    Science.gov (United States)

    Pushpavalli, Raju; Krishnamurthy, Laxmanan; Thudi, Mahendar; Gaur, Pooran M; Rao, Mandali V; Siddique, Kadambot H M; Colmer, Timothy D; Turner, Neil C; Varshney, Rajeev K; Vadez, Vincent

    2015-05-22

    Although chickpea (Cicer arietinum L.), an important food legume crop, is sensitive to salinity, considerable variation for salinity tolerance exists in the germplasm. To improve any existing cultivar, it is important to understand the genetic and physiological mechanisms underlying this tolerance. In the present study, 188 recombinant inbred lines (RILs) derived from the cross ICCV 2 × JG 11 were used to assess yield and related traits in a soil with 0 mM NaCl (control) and 80 mM NaCl (salinity) over two consecutive years. Salinity significantly (P chickpea genetic maps showed that these regions conferred salinity tolerance across two other populations and the markers can be deployed for enhancing salinity tolerance in chickpea. Based on the gene ontology annotation, forty eight putative candidate genes responsive to salinity stress were found on CaLG05 (31 genes) and CaLG07 (17 genes) in a distance of 11.1 Mb and 8.2 Mb on chickpea reference genome. Most of the genes were known to be involved in achieving osmoregulation under stress conditions. Identification of putative candidate genes further strengthens the idea of using CaLG05 and CaLG07 genomic regions for marker assisted breeding (MAB). Further fine mapping of these key genomic regions may lead to novel gene identification for salinity stress tolerance in chickpea.

  19. Arsenic accumulation in root and shoot vis-a-vis its effects on growth and level of phytochelatins in seedlings of Cicer arietinum L.

    Science.gov (United States)

    Gupta, D K; Tripathi, R D; Mishra, S; Srivastava, S; Dwivedi, S; Rai, U N; Yang, X E; Huanji, H; Inouhe, M

    2008-05-01

    Arsenic (As) contamination of water and soil has become a subject of prime interest due to its direct effect on human health through drinking water and food. In present study two varieties (CSG-8962 and C-235) of chickpea, Cicer arietinum L., which is a major supplementary food in many parts of India and a valuable source of protein, has been selected to estimate the level of arsenate in root and shoot of five day old seedlings vis-à-vis effect of arsenate on seedling growth and induction of thiols including glutathione (GSH) and phytochelatins (PCs) and their homologues. Both varieties accumulated arsenate to similar levels and most of the metalloid was confined to roots, only about 2.5% was translocated to shoot. Plant growth was also not affected significantly in both the varieties. Arsenate exposure significantly induced the levels of thiols including PCs and homophytochelatins (hPCs). The induction of thiols was much higher in roots than shoots and was greater in var C-235 between the two tested ones. Thus, both varieties tolerated and detoxified arsenic through chelation with GSH, PCs and hPCs, primarily in roots, however var C-235 performed better

  20. Increased protein content of chickpea (Cicer arietinum L.) inoculated with arbuscular mycorrhizal fungi and nitrogen-fixing bacteria under water deficit conditions.

    Science.gov (United States)

    Oliveira, Rui S; Carvalho, Patrícia; Marques, Guilhermina; Ferreira, Luís; Nunes, Mafalda; Rocha, Inês; Ma, Ying; Carvalho, Maria F; Vosátka, Miroslav; Freitas, Helena

    2017-10-01

    Chickpea (Cicer arietinum L.) is a widely cropped pulse and an important source of proteins for humans. In Mediterranean regions it is predicted that drought will reduce soil moisture and become a major issue in agricultural practice. Nitrogen (N)-fixing bacteria and arbuscular mycorrhizal (AM) fungi have the potential to improve plant growth and drought tolerance. The aim of the study was to assess the effects of N-fixing bacteria and AM fungi on the growth, grain yield and protein content of chickpea under water deficit. Plants inoculated with Mesorhizobium mediterraneum or Rhizophagus irregularis without water deficit and inoculated with M. mediterraneum under moderate water deficit had significant increases in biomass. Inoculation with microbial symbionts brought no benefits to chickpea under severe water deficit. However, under moderate water deficit grain crude protein was increased by 13%, 17% and 22% in plants inoculated with M. mediterraneum, R. irregularis and M. mediterraneum + R. irregularis, respectively. Inoculation with N-fixing bacteria and AM fungi has the potential to benefit agricultural production of chickpea under water deficit conditions and to contribute to increased grain protein content. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  1. Discriminatory antibacterial effects of calix[n]arene capped silver nanoparticles with regard to gram positive and gram negative bacteria.

    Science.gov (United States)

    Boudebbouze, Samira; Coleman, Anthony W; Tauran, Yannick; Mkaouar, Hela; Perret, Florent; Garnier, Alexandrine; Brioude, Arnaud; Kim, Beomjoon; Maguin, Emmanuelle; Rhimi, Moez

    2013-08-18

    Silver nanoparticles capped with nine different sulphonated calix[n]arenes were tested for their anti-bacterial effects against B. subtilis and E. coli at an apparent concentration of 100 nM in calix[n]arene. The results show the para-sulphonato-calix[n]arenes are active against Gram positive bacteria and the derivatives having sulphonate groups at both para and alkyl terminal positions are active against Gram negative bacteria. The calix[6]arene derivative with only O-alkyl sulphonate groups shows bactericidal activity.

  2. Cyclic diguanylate signaling in Gram-positive bacteria.

    Science.gov (United States)

    Purcell, Erin B; Tamayo, Rita

    2016-09-01

    The nucleotide second messenger 3'-5' cyclic diguanylate monophosphate (c-di-GMP) is a central regulator of the transition between motile and non-motile lifestyles in bacteria, favoring sessility. Most research investigating the functions of c-di-GMP has focused on Gram-negative species, especially pathogens. Recent work in Gram-positive species has revealed that c-di-GMP plays similar roles in Gram-positives, though the precise targets and mechanisms of regulation may differ. The majority of bacterial life exists in a surface-associated state, with motility allowing bacteria to disseminate and colonize new environments. c-di-GMP signaling regulates flagellum biosynthesis and production of adherence factors and appears to be a primary mechanism by which bacteria sense and respond to surfaces. Ultimately, c-di-GMP influences the ability of a bacterium to alter its transcriptional program, physiology and behavior upon surface contact. This review discusses how bacteria are able to sense a surface via flagella and type IV pili, and the role of c-di-GMP in regulating the response to surfaces, with emphasis on studies of Gram-positive bacteria.

  3. Kinase Activity Profiling of Gram-Negative Pneumonia

    NARCIS (Netherlands)

    Hoogendijk, Arie J.; Diks, Sander H.; Peppelenbosch, Maikel P.; van der Poll, Tom; Wieland, Catharina W.

    2011-01-01

    Pneumonia is a severe disease with high morbidity and mortality. A major causative pathogen is the Gram-negative bacterium Klebsiella (K.) pneumoniae Kinases play an integral role in the transduction of intracellular signaling cascades and regulate a diverse array of biological processes essential t

  4. Kinase activity profiling of gram-negative pneumonia

    NARCIS (Netherlands)

    A.J. Hoogendijk (Arie); S.H. Diks (Sander); M.P. Peppelenbosch (Maikel); T. van der Poll (Tom); C.W. Wieland (Catharina )

    2011-01-01

    textabstractPneumonia is a severe disease with high morbidity and mortality. A major causative pathogen is the Gram-negative bacterium Klebsiella (K.) pneumoniae. Kinases play an integral role in the transduction of intracellular signaling cascades and regulate a diverse array of biological processe

  5. Kinase activity profiling of gram-negative pneumonia

    NARCIS (Netherlands)

    A.J. Hoogendijk; S.H. Diks; M.P. Peppelenbosch; T. van der Poll; C.W. Wieland

    2011-01-01

    Pneumonia is a severe disease with high morbidity and mortality. A major causative pathogen is the Gram-negative bacterium Klebsiella (K.) pneumoniae. Kinases play an integral role in the transduction of intracellular signaling cascades and regulate a diverse array of biological processes essential

  6. Genome Sequences of Nine Gram-Negative Vaginal Bacterial Isolates

    Science.gov (United States)

    Deitzler, Grace E.; Ruiz, Maria J.; Lu, Wendy; Weimer, Cory; Park, SoEun; Robinson, Lloyd S.; Hallsworth-Pepin, Kymberlie; Wollam, Aye; Mitreva, Makedonka

    2016-01-01

    The vagina is home to a wide variety of bacteria that have great potential to impact human health. Here, we announce reference strains (now available through BEI Resources) and draft genome sequences for 9 Gram-negative vaginal isolates from the taxa Citrobacter, Klebsiella, Fusobacterium, Proteus, and Prevotella. PMID:27688330

  7. Sinus surgery postpones chronic gram-negative lung infection

    DEFF Research Database (Denmark)

    Alanin, M C; Aanaes, K; Høiby, N

    2016-01-01

    Background: In patients with cystic fibrosis (CF) the sinuses are a bacterial reservoir for Gram-negative bacteria (GNB). From the sinuses the GNB can repeatedly migrate to the lungs. In a one-year follow-up study, endoscopic sinus surgery (ESS) with adjuvant therapy reduced the frequency...

  8. Valorização de alimentos tradicionais da terra de Miranda: caracterização morfológica e valor nutricional de Cicer arietinum L. e Lathyrus sativus

    OpenAIRE

    Sarmento, Alzira Esteves Fernandes; Carvalho, Ana Maria; Barros, Lillian; Isabel C. F. R. Ferreira

    2013-01-01

    O uso de alimentos e receitas tradicionais pode enriquecer e beneficiar a dieta atual, promovendo e valorizando em simultâneo os saberes e tradições locais que passaram de geração em geração. Algumas espécies de leguminosas (Família Fabaceae) tiveram um importante papel na história da agricultura Portuguesa. O grão-de-bico (Cicer arietinum L). e o chicharão (Lathyrus sativus L.) são bons exemplos de espécies frequentemente cultivadas em épocas antigas para consumo humano e forr...

  9. Sediment velocities from sonobuoys: Bengal Fan, Sunda Trench, Andaman Basin, and Nicobar Fan

    Energy Technology Data Exchange (ETDEWEB)

    Hamilton, E.L.; Bachman, R.T.; Curray, J.R.; Moore, D.G.

    1977-07-10

    New measurements of interval compressional wave velocities were made in the first sediment layer using the sonobuoy technique during two expeditions in the Bay of Bengal, in the Andaman Sea, and over the Nicobar Fan and Sunda Trench. Sediment interval velocities from these areas were added to those previously reported, and revised diagrams and regression equations of instantaneous and mean velocity versus one-way travel time are furnished for four areas of the Bengal Fan, and for the Anadman Basin, Nicobar Fan, Sunda Trench. The velocity gradients directly below the sea floor were used to separate the Bengal Fan into four geoacoustic provinces. In the north and west the velocity gradients are 0.86 and 1.28 s/sup -1/, respectively, whereas in the central part of the fan the gradient is 1.87 s/sup -1/. These variations indicate lesser increases of velocity with depth in the sea floor in the north and west, and they are probably due to more rapid deposition, less consolidation, and less lithification near the riverine source areas of the sediments. The near-surface velocity gradients in the other areas are the Andaman Basin, 1.53 s/sup -1/, the Nicobar Fan 1.63 s/sup -1/, and the Sunda Trench, 1.41 s/sup -1/. The linear velocity gradients (from the sediment surface to a given travel time) in 17 areas of the Indian Ocean, Pacific area, Atlantic Ocean, and Gulf of Mexico were averaged at each 0.1 s from 0 to 0.5 s of one-way travel time. These averaged gradients ranged from 1.32 s/sup -1/ at t=0 to 0.76 s/sup -1/ at t=0.5 s. The regression equation for the velocity gradients a, in s/sup -1/, as a function of one-way travel time t, in seconds, is a=1.316-1.117t (for use from t=0 to 0.5 s). These average velocity gradients can be used with sediment surface velocities and one-way travel times (measured from reflection records) to compute sediment layer thickness in areas of turbidites lacking interval velocity measurements in the first sediment layer.

  10. Respiration rates in subsurface waters of the northern Indian Ocean: Evidence for low decomposition rates of organic matter within the water column in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Naqvi, S.W.A.; Shailaja, M.S.; DileepKumar, M.; Sengupta, R.

    Depth profiles of activity of the respirtory Electron Transport System (ETS) have been generated at several locations in the northern Indian Ocean. The results reveal much lower ETS activities in subsurface waters of the Bay of Bengal than those...

  11. Seasonal variation of sea surface temperature in the Bay of Bengal during 1992 as derived from NOAA-AVHRR SST data

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Subrahmanyam, B.; Rao, L.V.G.; Reddy, G.V.

    Monthly maps of sea surface temperature (SST) derived for NOAA (National Oceanic and Atmospheric Administration)-AVHRR (Advanced Very High Resolution Radiometer) data during 1992 for the Bay of Bengal are analysed and compared with the available...

  12. Geoid and gravity anomaly data of conjugate regions of Bay of Bengal and Enderby Basin: New constraints on breakup and early spreading history between India and Antarctica

    Digital Repository Service at National Institute of Oceanography (India)

    Krishna, K.S.; Michael, L.; Bhattacharyya, R.; Majumdar, T.J.

    Enderby Basin as conjugate FZs that trace the early Cretaceous rifting of south ECMI from Enderby Land. Structural rises between the FZs of Bay of Bengal may either represent fossil ridge segments, possibly have extinct during the early evolution...

  13. Estimation of tropical cyclone heat potential in the Bay of Bengal and its role in the genesis and intensification of storms

    Digital Repository Service at National Institute of Oceanography (India)

    Sadhuram, Y.; Murthy, T.V.R.; Somayajulu, Y.K.

    In the present study, cyclone heat potential (CHP) in the Bay of Bengal has been estimated for different seasons using Levitus climatology. A good association was noticed between CHP and the efficiency of intensification (i.e the ratio between...

  14. KESEPADANAN PADA PENERJEMAHAN KATA BERMUATAN BUDAYA JEPANG KE DALAM BAHASA INDONESIA : Studi Kasus dalam Novel Botchan Karya Natsume Soseki dan Terjemahannya Botchan Si Anak Bengal oleh Jonjon Johana

    National Research Council Canada - National Science Library

    Dewi Puspitasari; Eka Marthanty Indah Lestari; Nadya Inda Syartanti

    2015-01-01

    .... Botchan is one of the best literary works from Natsume Soseki that was translated into several languages, including Indonesian language, with the title of the translation Botchan Si Anak Bengal by Jonjon Johana...

  15. Hydrographic features of the western Bay of Bengal in the upper 500 m under the influence of NE and SW monsoon

    Digital Repository Service at National Institute of Oceanography (India)

    Suryanarayana, A.; Murty, V.S.N.; Sarma, Y.V.B.; Babu, M.T.; Rao, D.P.; Sastry, J.S.

    The distribution of temperature, salinity, density and geostrophic currents in the upper 500 m of the western Bay of Bengal within 500 km adjoining the East Coast of India for NE and SW monsoons have been studied. These distributions show...

  16. Hydrochemistry of the Bay of Bengal: Possible reasons for a different water-column cycling of carbon and nitrogen from the Arabian Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Rao, C.K.; Naqvi, S.W.A.; DileepKumar, M.; Varaprasad, S.J.D; Jayakumar, D; George, M.D; Singbal, S.Y.S.

    A study on biogeochemical cycling in the western Bay of Bengal was undertaken during two seasons (pre-southwest monsoon and northeast monsoon of 1991). Relationships of the conservative tracers NO and PO with potential temperature (~f) are used...

  17. Antimicrobial activity against Gram-positive and Gram-negative bacteria during gatifloxacin degradation by hydroxyl radicals.

    Science.gov (United States)

    Caianelo, Marlon; Rodrigues-Silva, Caio; Maniero, Milena Guedes; Guimarães, José Roberto

    2017-03-01

    Gatifloxacin, an antimicrobial drug belonging to the fluoroquinolone family, is active against Gram-positive and Gram-negative bacteria and is extensively used for the control of infections in humans. The presence of the drug in environmental matrices has already been reported. This study investigated the degradation of gatifloxacin in water by hydroxyl radicals generated by the UV254 nm/H2O2 process ([Formula: see text] 0.4-2.4 mmol L(-1)) and evaluated the capacity of the radicals to reduce the antimicrobial activity against Gram-positive and Gram-negative bacteria. Acute toxicity assays were performed with Vibrio fischeri, and the degradation products were proposed. The hydroxyl radicals formed in the processes were able to degrade the fluoroquinolone and remove the antimicrobial activity from the aqueous solution. Approximately 97 % gatifloxacin degradation was observed after applying 2.4 mmol L(-1) of initial H2O2 concentration and 20 min of UVC254nm irradiation (130 J s(-1)). The acute toxicity assays showed that the toxicity of the treated solution for V. fischeri increased as the gatifloxacin concentration in the solution decreased.

  18. Antimicrobial Activities of Leaf Extracts of Guava (Psidium guajava L. on Two Gram-Negative and Gram-Positive Bacteria

    Directory of Open Access Journals (Sweden)

    Bipul Biswas

    2013-01-01

    Full Text Available Aim. To determine the antimicrobial potential of guava (Psidium guajava leaf extracts against two gram-negative bacteria (Escherichia coli and Salmonella enteritidis and two gram-positive bacteria (Staphylococcus aureus and Bacillus cereus which are some of foodborne and spoilage bacteria. The guava leaves were extracted in four different solvents of increasing polarities (hexane, methanol, ethanol, and water. The efficacy of these extracts was tested against those bacteria through a well-diffusion method employing 50 μL leaf-extract solution per well. According to the findings of the antibacterial assay, the methanol and ethanol extracts of the guava leaves showed inhibitory activity against gram-positive bacteria, whereas the gram-negative bacteria were resistant to all the solvent extracts. The methanol extract had an antibacterial activity with mean zones of inhibition of 8.27 and 12.3 mm, and the ethanol extract had a mean zone of inhibition of 6.11 and 11.0 mm against B. cereus and S. aureus, respectively. On the basis of the present finding, guava leaf-extract might be a good candidate in the search for a natural antimicrobial agent. This study provides scientific understanding to further determine the antimicrobial values and investigate other pharmacological properties.

  19. Um protótipo de gramática gerativa portuguesa: a gramática de Soares Barbosa

    Directory of Open Access Journals (Sweden)

    Edward Lopes

    2001-01-01

    Full Text Available

    Este trabalho estuda os aspectos doutrinários da Grammatica Philosophica da Lingua Portugueza, de Jerônimo Soares Barbosa, elaborada com base na doutrina da Grammaire générale et raisonnée de Port-Royal, para mostrar que ela é o protótipo iluminista de uma gramática gerativa da língua portuguesa. Essa gramática é a expressão das idéias iluministas no domínio da ciência da linguagem. Insere-se assim no embate ideológico que se travava, nessa época, entre as idéias absolutistas e a filosofia das Luzes. Essas posições manifestam-se, no nível dos estudos lingüísticos, pela gramática normativa, que estabelece um saber fazer, e pela gramática filosófica, que constrói um fazer.

  20. GRAPHENE OXIDE AS ANTIMICROBIAL AGAINST TWO GRAM-POSITIVE AND TWO GRAM-NEGATIVE BACTERIA IN ADDITION TO ONE FUNGUS

    Directory of Open Access Journals (Sweden)

    Roda F. Al-Thani

    2014-01-01

    Full Text Available Graphene based materials have wide potential applications in biology, biomedical, agriculture environmental and biotechnology. Graphene Oxide (GO is one of those materials and has a promising substance as antimicrobial agents. GO in this study was prepared by a modified Hummers method and was characterized by different techniques for confirmation of formation of GO. To study the antimicrobial activities of GO, it was tested against these microorganisms, one eukaryotic fungus (Candida albicans, C. albicans two Gram negative bacteria (Escherichia coli (E. coli ATCC 41570 and Pseudomonas aeruginosa (P. aeruginosa ATCC 25619 and two Gram positive bacteria (Streptococcus faecalis (S. faecalis ATCC 19433 and Staphylococcus aureus (S. aureus ATCC 11632. Anti-microbial activity of GO was detected by spectrophotometer as indirect method to measure the growth and viable cell count as direct method. Readings were taken at successive incubated times. Results revealed that GO has antibacterial and anti-fungal activity against microorganisms used in this study. In conculosion the developed GO exhibit excellent antimicrobial property and GO affects more on Gram positive bacteria than Gram negative bacteria and fungi.

  1. Tryptophan-containing lipopeptide antibiotics derived from polymyxin B with activity against Gram positive and Gram negative bacteria.

    Science.gov (United States)

    Grau-Campistany, Ariadna; Manresa, Ángeles; Pujol, Montserrat; Rabanal, Francesc; Cajal, Yolanda

    2016-02-01

    Resistance to all known antibiotics is a growing concern worldwide, and has renewed the interest in antimicrobial peptides, a structurally diverse class of amphipathic molecules that essentially act on the bacterial membrane. Propelled by the antimicrobial potential of this compound class, we have designed three new lipopeptides derived from polymyxin B, sp-34, sp-96 and sp-100, with potent antimicrobial activity against both Gram positive and Gram negative bacteria. The three peptides bind with high affinity to lipopolysaccharide as demonstrated by monolayer penetration and dansyl-displacement. The interaction with the cytoplasmic membrane has been elucidated by biophysical experiments with model membranes of POPG or POPE/POPG (6:4), mimicking the Gram positive and Gram negative bacterial membrane. Trp-based fluorescence experiments including steady-state, quenching, anisotropy and FRET, reveal selectivity for anionic phospholipids and deep insertion into the membrane. All three lipopeptides induce membrane fusion and leakage from anionic vesicles, a process that is favored by the presence of POPE. The molecules bind to zwitterionic POPC vesicles, a model of the eukaryotic membrane, but in a different way, with lower affinity, less penetration into the bilayer and no fusion or permeabilization of the membrane. Results in model membranes are consistent with flow cytometry experiments in Escherichia coli and Staphylococcus aureus using a membrane potential sensitive dye (bis-oxonol) and a nucleic acid dye (propidium iodide), suggesting that the mechanism of action is based on membrane binding and collapse of membrane integrity by depolarization and permeabilization.

  2. Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria

    Science.gov (United States)

    Kocurek, Klaudia I.; Stones, Leanne; Bunch, Josephine; May, Robin C.; Cooper, Helen J.

    2017-10-01

    We have previously shown that liquid extraction surface analysis (LESA) mass spectrometry (MS) is a technique suitable for the top-down analysis of proteins directly from intact colonies of the Gram-negative bacterium Escherichia coli K-12. Here we extend the application of LESA MS to Gram-negative Pseudomonas aeruginosa PS1054 and Gram-positive Staphylococcus aureus MSSA476, as well as two strains of E. coli (K-12 and BL21 mCherry) and an unknown species of Staphylococcus. Moreover, we demonstrate the discrimination between three species of Gram-positive Streptococcus ( Streptococcus pneumoniae D39, and the viridans group Streptococcus oralis ATCC 35037 and Streptococcus gordonii ATCC35105), a recognized challenge for matrix-assisted laser desorption ionization time-of-flight MS. A range of the proteins detected were selected for top-down LESA MS/MS. Thirty-nine proteins were identified by top-down LESA MS/MS, including 16 proteins that have not previously been observed by any other technique. The potential of LESA MS for classification and characterization of novel species is illustrated by the de novo sequencing of a new protein from the unknown species of Staphylococcus. [Figure not available: see fulltext.

  3. Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria

    Science.gov (United States)

    Kocurek, Klaudia I.; Stones, Leanne; Bunch, Josephine; May, Robin C.; Cooper, Helen J.

    2017-07-01

    We have previously shown that liquid extraction surface analysis (LESA) mass spectrometry (MS) is a technique suitable for the top-down analysis of proteins directly from intact colonies of the Gram-negative bacterium Escherichia coli K-12. Here we extend the application of LESA MS to Gram-negative Pseudomonas aeruginosa PS1054 and Gram-positive Staphylococcus aureus MSSA476, as well as two strains of E. coli (K-12 and BL21 mCherry) and an unknown species of Staphylococcus. Moreover, we demonstrate the discrimination between three species of Gram-positive Streptococcus (Streptococcus pneumoniae D39, and the viridans group Streptococcus oralis ATCC 35037 and Streptococcus gordonii ATCC35105), a recognized challenge for matrix-assisted laser desorption ionization time-of-flight MS. A range of the proteins detected were selected for top-down LESA MS/MS. Thirty-nine proteins were identified by top-down LESA MS/MS, including 16 proteins that have not previously been observed by any other technique. The potential of LESA MS for classification and characterization of novel species is illustrated by the de novo sequencing of a new protein from the unknown species of Staphylococcus.

  4. 12. Chromosomal aberrations and sister chromatid exchanges in the symptomatic individuals exposed to arsenic through drinking water in West Bengal, India

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@In the seven districts of West Bengal, India arsenic in ground water has been found to be above the permissible limit. The concentrations of arsenic is ranging from 200-800 (g/l according to latest reports. More than 200,000 people have already shown different types of arsenical skin lesions in these seven districts of West Bengal. It has been regarded as the biggest arsenic calamity in the world. However, there is

  5. Evidence for Wolbachia symbiosis in microfilariae of Wuchereria bancrofti from West Bengal, India

    Indian Academy of Sciences (India)

    Prajna Gayen; Sudipta Maitra; Sutapa Datta; Santi P Sinha Babu

    2010-03-01

    Wolbachia are symbiotic endobacteria that infect the majority of filarial nematodes, including Wuchereria bancrofti, Brugia malayi and Onchocerca volvulus. Recent studies have suggested that Wolbachia are necessary for the reproduction and survival of filarial nematodes and have highlighted the use of antibiotic therapy such as tetracycline/doxycycline as a novel method of treatment for infections caused by these organisms. Before such therapy is conceived and implemented on a large scale, it is necessary to assess the prevalence of the endosymbiont in W. bancrofti from different geographical locations. We present data from molecular and electron microscopic studies to provide evidence for Wolbachia symbiosis in W. bancrofti microfilariae collected from two districts (Bankura and Birbhum) of West Bengal, India.

  6. HIV/AIDS related deaths from three district hospitals of West Bengal: An observation

    Directory of Open Access Journals (Sweden)

    MK Bhattacharya

    2014-01-01

    Full Text Available Data on HIV/AIDS incidence or deaths are limited in poor-resource country like India and non-existent in state of West Bengal. These data are essential for formulating policies for HIV intervention strategies to curb HIV epidemic. In present study, a descriptive analysis of all registered cases from three district hospitals (Maldah, North 24 Parganas and Darjeeling during July 2006-December 2007 was conducted. HIV/AIDS related deaths were found to be higher in Darjeeling district compare to other two districts. A comprehensive and well-coordinated survey is needed to explore further HIV/AIDS mortality data in India for providing necessary information in developing HIV prevention programs.

  7. The dopant dependent photocatalytic activity of polyaniline towards the degradation of Rose Bengal dye

    Science.gov (United States)

    Chatterjee, Mukulika Jana; Banerjee, Dipali; Ghosh, Amrita; Mondal, Anup

    2016-05-01

    Polyaniline (PANI) with two different dopants, hydrochloric acid (HCl) and bismuth nitrate (Bi (NO3)3), were synthesized to investigate the effect of dopant on photocatalytic degradation of Rose Bengal, an organic dye, in presence of sunlight. PANI, synthesized by in situ polymerization was characterized by FESEM images, FTIR and UV-Vis spectra. FESEM images show rod like structures obtained for both the dopants. FTIR spectra confirms the formation of conducting PANI with the presence of C=N, C=C stretching modes in quinoid and benzenoid units. Band gap of PANI has been obtained from UV-Vis spectrum. Doped polyaniline exhibited a fast degradation of dye by 98.62 % & 98.12 % within 5 min & 8 min under visible light illumination for the dopant HCl & Bi (NO3)3 respectively.

  8. Effect of Environmental Exposure of Arsenic on Cattle and Poultry in Nadia District, West Bengal, India

    Science.gov (United States)

    Datta, Bakul Kumar; Bhar, Moloy Kumar; Patra, Pabitra Hriday; Majumdar, Debasish; Dey, Radha Raman; Sarkar, Samar; Mandal, Tapan Kumar; Chakraborty, Animesh Kumar

    2012-01-01

    A study was undertaken to evaluate an alternative source of arsenicosis in human food chain through livestock. Thirty milch cattle and 20 poultry birds along with their eggs were selected randomly from two endemic villages of Nadia district and one nonendemic villages of Hooghly district in West Bengal, India. Milk, feces, urine, and hair samples of cattle and feed materials, such as water and straw, were collected to analyze arsenic status. Arsenic concentration in egg yolk and albumen from poultry eggs and different poultry organs after culling was estimated. Distribution of arsenic in animal body indicates that major portion of arsenic was eliminated through feces, urine, and milk. Poultry egg yolk, albumen, and poultry products retain arsenic in all organs. Cows and poultry birds reared in endemic zone retain significantly higher concentration of arsenic. Consumption of egg, agricultural produces grown in contaminated soil, and milk might have produced arsenicosis and may be considered as alternative source of arsenic contamination. PMID:22736905

  9. An outbreak of Koro among 19 workers in a jute mill in south Bengal.

    Science.gov (United States)

    Chakraborty, Suddhendu; Sanyal, Debasish

    2011-01-01

    Koro is a culture-bound syndrome that is characterized by the belief of retraction of genitals into the abdomen. It was initially reported in Asian countries, as having a usual acute and brief course. Two case clusters have been described in this article. Both occurred in the same jute mill in southern West Bengal among the workers. The case clusters depict unique socioeconomic factors and interesting health-seeking behavior toward koro. All the cases had a self-limiting course and reasonably good outcome. The case cluster yet again confirms that koro is not as rare as it is thought of and social and economic factors continue to play an important role in the etiology of the disease.

  10. An outbreak of Koro among 19 workers in a jute mill in south Bengal

    Directory of Open Access Journals (Sweden)

    Suddhendu Chakraborty

    2011-01-01

    Full Text Available Koro is a culture-bound syndrome that is characterized by the belief of retraction of genitals into the abdomen. It was initially reported in Asian countries, as having a usual acute and brief course. Two case clusters have been described in this article. Both occurred in the same jute mill in southern West Bengal among the workers. The case clusters depict unique socioeconomic factors and interesting health-seeking behavior toward koro. All the cases had a self-limiting course and reasonably good outcome. The case cluster yet again confirms that koro is not as rare as it is thought of and social and economic factors continue to play an important role in the etiology of the disease.

  11. An ergonomic study on posture-related discomfort among preadolescent agricultural workers of West Bengal, India.

    Science.gov (United States)

    Gangopadhyay, Somnath; Das, Banibrata; Das, Tamal; Ghoshal, Goutam

    2005-01-01

    In India, particularly in West Bengal, preadolescents are primarily associated with agricultural work in rural areas. Owing to poor socio-economic conditions, they are compelled to carry out a considerable number of manual, rigorous tasks in agricultural fields. The main aim of this study was to investigate postures adopted by preadolescent agricultural workers during individual agricultural activities and to analyze the causes of discomfort related to those postures. Fifty male and 50 female preadolescent agricultural workers were randomly selected and a detailed posture analysis was performed with the Ovako Working Posture Analysis System (OWAS). It was observed that those workers worked continuously in awkward postures during certain agricultural activities. Consequently they suffered from discomfort in different parts of their body. Even though they were very young, they were likely to suffer from serious musculoskeletal disorders in the future.

  12. Chordoma of the thoracic vertebrae in a Bengal tiger (Panthera tigris tigris).

    Science.gov (United States)

    Kuramochi, Mizuki; Izawa, Takeshi; Hori, Mayuka; Kusuda, Kayo; Shimizu, Junichiro; Iseri, Toshie; Akiyoshi, Hideo; Ohashi, Fumihito; Kuwamura, Mitsuru; Yamate, Jyoji

    2015-07-01

    A 19-year-old female Bengal tiger (Panthera tigris tigris) was presented with hind limb weakness, ataxia and respiratory distress. Computed tomography revealed a mass between the left side of the T7 vertebra and the base of the left 7th rib. The tiger then died, and necropsy was performed. Grossly, the vertebral mass was 6 × 5.7 × 3 cm, and invaded the adjacent vertebral bone and compressed the T7 spinal cord. Histologically, the mass was composed of large, clear, vacuolated and polygonal cells with osteochondral matrix. Cellular and nuclear atypia were moderate. The vacuolated cells stained positively for cytokeratin and vimentin and negatively for S-100. Based on these findings, the present case was diagnosed as a vertebral chordoma; the first report in a tiger.

  13. Conductance switching mechanism of Rose Bengal organic thin films in ambient conditions

    Institute of Scientific and Technical Information of China (English)

    Cai Li; Guo Hai-Ming; Zhu Xi; Du Shi-Xuan; Shi Dong-Xia; Gao Hong-Jun

    2009-01-01

    The molecular thin films of Rose Bengal(RB)embedded in polymethyl methacrylate matrix are fabricated by using the spin-coating technique.The macroscopic current-voltage(I-V)characterization of the film shows that the RB molecule has two conductance switching states with a high ON/OFF ratio in ambient conditions.The infrared spectra indicate that intermolecular hydrogen bonds can form in the RB thin films after their hydrolysis in air.With the first-principles calculations,we demonstrate that the hydrogen bonds will be destroyed in concomitance with the conformational change when the RB molecule switches to its high-conductance state after applying a voltage.

  14. A Study on Problems of Hijras in West Bengal Based on Neutrosophic Cognitive Maps

    Directory of Open Access Journals (Sweden)

    Kalyan Mondal

    2014-09-01

    Full Text Available This paper deals with the problems faced by Hijras in West Bengal in order to find its solutions using neutrosophic cognitive maps. Florentin Smarandache and Vasantha Kandasamy studied neutrosophic cognitive map which is an extension of fuzzy cognitive map by incorporating indeterminacy. Hijras is considered as neither man nor woman in biological point of view. They are in special gender identity (third gender in Indian society. In their daily life, they have to face many of problems in social aspects. Some of the problems namely, absence of social security, education problem, bad habits, health problem, stigma and discrimination, access to information and service problem, violence, Hijra community issues, and sexual behavior problem are considered in this study. Based on the expert’s opinion and the notion of indeterminacy, we formulate neutrosophic cognitive map. Then we studied the effect of two instantaneous state vectors separately on connection matrix E and neutrosophic adjacency matrix N(E.

  15. A comparison of palmar dermatoglyphics in two ethnic Indian populations of north Bengal, India.

    Science.gov (United States)

    Sen, Jaydip; Kanchan, Tanuj; Mondal, Nitish

    2011-01-01

    Dermatoglyphic print comparisons can be utilized to establish personal identification in forensic cases. The northern part of the state of West Bengal, India, is the home to many ethnic populations. Two such populations are the Rajbanshi and the Mech. Palm prints were collected from 192 adult Rajbanshi (105 men and 87 women) and 100 adult Mech (50 men and 50 women) individuals for print comparison using the standard ink and roll print method. The dermatoglyphic variables studied were mainline formulae, termination of mainline, positional variation of axial triradii, and true pattern of hypothenar and thenar configuration area. There were differences between the Rajbanshi and Mech individuals with respect to these dermatoglyphic variables. The uses of these variables appear to be limited only to ethnic identification, not personal identification. The present investigation further highlights the racial affinity, sex, and bilateral differences among Rajbanshi individuals using dermatoglyphic palmar variables.

  16. Environmental arsenic toxicity in West Bengal, India: A brief policy review

    Directory of Open Access Journals (Sweden)

    Atreyee Basu

    2015-01-01

    Full Text Available High-level arsenic contamination of drinking water in West Bengal (WB, India is a grave public health concern, with 26 million people remaining affected. Two decades of research has provided detailed information on multiple aspects of exposure assessment and risk characterization. However, policy paralysis due to lack of finances and lack of any administrative coordination between the Central and State Governments has hampered the implementation of long-term solutions. Household- and community-level arsenic removal units have provided some relief to the suffering population. In view of the increased funding through the 12th Five-Year Plan period, it is the responsibility of the authorities to implement piped water supply schemes with single-point treatment facilities as the permanent solution to this three-decade-long crisis. Incorporating research evidence into policy and focusing on behavior change communication would be crucial to that end.

  17. Optimization of lipase production from an indigenously isolated marine Aspergillus sydowii of Bay of Bengal

    Directory of Open Access Journals (Sweden)

    Panch Agnula Bindiya

    2012-08-01

    Full Text Available A total of 44 marine sediments from 8 locations along the South East Coast of Bay of Bengal were screened for lipolytic fungal isolates by tributyrin agar clearing method and submerged fermentation. Marine fungus BTSS 1005, isolated from Divipoint location was identified as Aspergillus sydowii. Further studies confirmed that BTSS105 produces higher extracellular lipase when compared with other isolates. Efforts to increase the yield were achieved by optimizing the production medium and growth conditions, which would fully exploit the potential of the microorganism. The optimum medium composition at 32°C, 8.0 pH, 80 rpm, 40% volume ratio, 96hr incubation time and 10% (v/v inoculum, under submerged fermentation was sucrose-2% (w/v; ammonium chloride-3.5% (w/v; olive oil-3% (v/v and tween 80-0.2% (v/v.

  18. Morphology dependent catalytic activity of TiO{sub 2} nanostructures towards photodegradation of Rose Bengal

    Energy Technology Data Exchange (ETDEWEB)

    Malik, Ritu; Kumar, Ashok; Rana, Pawan S., E-mail: drpawansrana.phy@dcrustm.org [Department of Physics, D.C.R. University of Science & Technology, Murthal (Sonepat) Haryana, 131039 (India); Nehra, S. P. [Centre of Excellence for Energy and Environmental Studies, D.C.R. University of Science & Technology, Murthal (Sonepat) Haryana, 131039 (India)

    2015-08-28

    This work deals with the synthesis of TiO{sub 2} nanostructures using sol-gel and hydrothermal method for evaluating their photodegradation performance towards decolorization of Rose Bengal (RB). A combination of characterization techniques including X-ray diffraction (XRD), Field emission scanning electron microscopy (FESEM) and UV–Vis spectroscopy were utilized to evaluate the structural, morphological and optical properties of the obtained nanostructures. It was observed that the TiO{sub 2} nanoparticles prepared using hydrothermal method were highly crystalline and possess higher band gap value, even when same conditions of temperature, pressure, precursor ratios and solvent amount was kept constant while synthesizing TiO{sub 2} nanostructures via sol-gel method. The obvious effect of porous morphology exhibited by TiO{sub 2} nanoparticles prepared using hydrothermal route is reflected in its decolorization performance whereby 92.5% of the RB dye solution was degraded in 70 min of irradiation time.

  19. Human and cattle population changes in deltaic West Bengal, India between 1977-1987

    Energy Technology Data Exchange (ETDEWEB)

    Odend' hal, S.

    1988-03-01

    In 1967-1970, 3.81 km/sup 2/ of a densely populated deltaic area of Hooghly district in West Bengal, India was intensively studied. This same area was resurveyed in 1977 and 1987. From 1977-1987, the human population has increased 10.1%, while the number of households has increased 25%. The total number of children below 10 years of age has diminished. The cattle have increased 26.5%. The number of working-age male cattle has dropped significantly with reliance, primarily on hand tractor power for field cultivation. The number of female cattle has increased substantially. Artificial insemination and the use of temperate breeds of bulls have had an obvious impact. Improvements in the general environment were observed.

  20. Assessment of alpha activity of building materials commonly used in West Bengal, India.

    Science.gov (United States)

    Ghosh, Dipak; Deb, Argha; Bera, Sukumar; Sengupta, Rosalima; Patra, Kanchan Kumar

    2008-02-01

    This paper, reports for the first time, an extensive study of alpha activity of all widely used building materials (plaster of Paris, stone chips, marble, white cement, mosaic stone, limestone, sand, granite, cement brick, asbestos, red brick, cement tile, ceramic tile and ceramics) in West Bengal, India. The alpha activities have been measured using Solid State Nuclear Track Detector (SSNTD), a very sensitive detector for alpha particles. The samples were collected from local markets of Kolkata. The measured average alpha activities ranged from 22.7+/-2.5 to 590.6+/-16.8Bqkg(-1). The alpha activity of ceramic tiles was highest and provides additional data to estimate the effect of environmental radiation exposure on human health.

  1. Synoptic Weather Conditions during the Pilot Study of Bay of Bengal Monsoon Experiment (BOBMEX)

    Indian Academy of Sciences (India)

    S R Kalsi

    2000-06-01

    BOBMEX-Pilot was organised from 23rd October - 11th November, 1998 when the seasonal trough had already shifted to south Bay of Bengal. The activity during this period was marked by the development of a monsoon depression from 26th-29th October that weakened over the sea; onset of northeast monsoon along the east coast of India on 29th October; a low pressure area that formed on 2nd November over southwest Bay off Sri Lanka -southTamilnadu coast; and another cyclonic circulation that formed towards the end of the BOBMEX-Pilot period. This paper describes the development of these synoptic systems through synoptic charts and satellite data.

  2. Evaluation of registered visually disabled individuals in a district of West Bengal, India

    Directory of Open Access Journals (Sweden)

    Ghosh Sambuddha

    2008-01-01

    Full Text Available Objective: To identify the sociodemographic characteristics, degree and cause of visual disability among certified visually disabled individuals in a rural district of West Bengal, India and to identify possible lacunae, if any, in the existing certification system. Materials and Methods: A cross-sectional study by secondary data analysis of medical records of 155 visually disabled individuals and their 310 eyes. Demographical features, diagnosis, percentage of visual disability and work activity status of each individual were analyzed. Results: One hundred and thirty one (84.52% individuals had 100% disability. The number of males was significantly higher than that of females. Fifty eight (37.42% individuals were below 21 years of age. Phthisis bulbi was the most common cause followed by microphthalmos. Further, 81.29% patients had the same lesion bilaterally. Conclusion: Patients with higher grades of disability have attended certification boards. A large number of disabled individuals comprised children and young adults. Male gender bias demands concern.

  3. Diversity of arsenite oxidizing bacterial communities in arsenic-rich deltaic aquifers in West Bengal, India

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    Devanita eGhosh

    2014-11-01

    Full Text Available High arsenic (As concentration in groundwater has affected human health, particularly in South-East Asia putting millions of people at risk. Biogeochemical cycling of As carried out by different bacterial groups are suggested to control the As fluxes in aquifers. A functional diversity approach in link with As precipitation was adopted to study bacterial community structures and their variation within the As contaminated Bengal Delta Plain (BDP aquifers of India. Groundwater samples collected from two shallow aquifers in Karimpur II (West Bengal, India, during years 2010 and 2011, were investigated to trace the effects of inter-annual variability in precipitation on community structure and diversity of bacterial assemblages. The study focused on amplification, clone library generation and sequencing of the arsenite oxidase large sub-unit gene aioA and 16S rRNA marker, with respect to changes in elemental concentrations. New set of primers were designed to amplify the aioA gene as a phylogenetic marker to study taxonomically diverse arsenite oxidizing bacterial groups in these aquifers. Overall narrow distribution of bacterial communities based on aioA and 16S rRNA sequences observed was due to poor nutrient status and anoxic conditions in these As contaminated aquifers. Proteobacteria was the dominant phylum detected, within which Acidovorax, Hydrogenophaga, Albidiferax, Bosea and Polymorphum were the major arsenite oxidizing bacterial genera. The structure of bacterial assemblages including those of arsenite oxidizing bacteria were affected by an increase in major elemental concentrations (e.g., As, iron, sulfur, and silica within two sampling sessions, which was supported by PCA analysis. One of the significant findings of this study is detection of novel lineages of 16S rRNA-like bacterial sequences indicating presence of indigenous bacterial communities across both wells of BDP that can play important role in biogeochemical cycling of

  4. Evaluation of some selected herbs on arsenic-affected cattle in Nadia District, West Bengal, India.

    Science.gov (United States)

    Hazarika, Jantu M; Sarkar, Prasanta K; Chattopadhyay, Abichal; Mandal, Tapan K; Sarkar, Samar

    2015-04-01

    Arsenic poisoning due to contaminated subsoil water is one of the most alarming environment hazards in West Bengal, India. Cattle are also affected by arsenic due to ingestion of arsenic contaminated water, paddy straw, crops and vegetables. Thirty milch cattle having arsenic content in the range of 3.5 to 4.5 mg/kg in hair were chosen for this experiment from cattle of five respective villages in Nadia District, West Bengal, India. The cattle were divided into three groups containing 10 animals each. Group I cattle were treated with turmeric powder (Curcuma longa) 20 g/day orally for 60 days. Group II cattle were treated with turmeric powder (10 g/day) and Amaranthus spinosus powder (10 g/day) orally for 60 days. Group III cattle were treated with turmeric powder (10 g/day) and Eclipta alba powder (10 g/day) orally for 60 days. Ten apparently healthy milch cows with no history of exposure to arsenic were selected and kept as control group (group IV). Arsenic content in hair, faeces, urine and milk; different biochemical and haematological parameters and DNA fragmentation percentage assay were carried out before commencement of the treatment, after 30 days and after 60 days of treatment. The test drugs were found significantly (p arsenic from the body and lead to significant improvement in different biochemistry, pathology and DNA fragmentation assay. These drugs also give protection from possible damage caused by arsenic exposure.

  5. Corneal Wound Repair After Rose Bengal and Green Light Crosslinking: Clinical and Histologic Study.

    Science.gov (United States)

    Gallego-Muñoz, Patricia; Ibares-Frías, Lucía; Lorenzo, Elvira; Marcos, Susana; Peréz-Merino, Pablo; Bekesi, Nandor; Kochevar, Irene E; Martínez-García, M Carmen

    2017-07-01

    To evaluate corneal wound healing after treatment with a new collagen crosslinking protocol using rose bengal dye and green light (RGX). One cornea of 20 New Zealand rabbits was de-epithelialized (DE) in an 8-mm diameter circle and, in another group (n = 25), the DE corneas were then stained with 0.1% rose bengal for 2 minutes and exposed to green light (532 nm) for 7 minutes (RGX). The contralateral eyes without treatment acted as controls. The animals were clinically followed including fluorescein staining and pachymetry. Healing events were analyzed after euthanasia at 2, 30, and 60 days. Cell death (TUNEL assay), cell proliferation (5-bromo-2'-deoxyuridine incorporation), and cell differentiation to myofibroblasts (α-SMA labeling) were carried out. In addition, loss of keratocytes and subsequent repopulation of the corneal stroma were quantified on hematoxylin-eosin-stained sections. Wound closure was slower after RGX (4.4 days) then after DE (3.3 days). Cell death was restricted to the anterior central stroma, and the cellular decrease did not differ significantly between RGX and DE corneas. Cell proliferation in the epithelium and stroma appeared at 2 days. In both DE and RGX corneas, recovery of the epithelium was complete at day 30, although cell repopulation of the stroma was not complete at 60 days. The healing response in corneas after RGX is very similar to that observed after DE alone, suggesting that, along with its short treatment time and limited effect on keratocytes, RGX displays good potential for clinical cornea stiffening.

  6. Collagen cross-linking using rose bengal and green light to increase corneal stiffness.

    Science.gov (United States)

    Cherfan, Daniel; Verter, E Eri; Melki, Samir; Gisel, Thomas E; Doyle, Francis J; Scarcelli, Giuliano; Yun, Seok Hyun; Redmond, Robert W; Kochevar, Irene E

    2013-05-13

    Photochemical cross-linking of corneal collagen is an evolving treatment for keratoconus and other ectatic disorders. We evaluated collagen cross-linking by rose bengal plus green light (RGX) in rabbit eyes and investigated factors important for clinical application. Rose bengal (RB, 0.1%) was applied to deepithelialized corneas of enucleated rabbit eyes for 2 minutes. The diffusion distance of RB into the stroma was measured by fluorescence microscopy on frozen sections. RB-stained corneas were exposed to green (532-nm) light for 3.3 to 9.9 minutes (50-150 J/cm(2)). Changes in the absorption spectrum during the irradiation were recorded. Corneal stiffness was measured by uniaxial tensiometry. The spatial distribution of the stromal elastic modulus was assessed by Brillouin microscopy. Viable keratocytes were counted on H&E-stained sections 24 hours posttreatment. RB penetrated approximately 100 μm into the corneal stroma and absorbed >90% of the incident green light. RGX (150 J/cm(2)) increased stromal stiffness by 3.8-fold. The elastic modulus increased in the anterior approximately 120 μm of stroma. RB was partially photobleached during the 2-minute irradiation, but reapplication of RB blocked light transmission by >70%. Spectral measurements suggested that RGX initiated cross-linking by an oxygen-dependent mechanism. RGX did not decrease keratocyte viability. RGX significantly increases cornea stiffness in a rapid treatment (≅12 minutes total time), does not cause toxicity to keratocytes and may be used to stiffen corneas thinner than 400 μm. Thus, RGX may provide an attractive approach to inhibit progression of keratoconus and other ectatic disorders.

  7. Lithosphere structure and upper mantle characteristics below the Bay of Bengal

    Science.gov (United States)

    Rao, G. Srinivasa; Radhakrishna, M.; Sreejith, K. M.; Krishna, K. S.; Bull, J. M.

    2016-07-01

    The oceanic lithosphere in the Bay of Bengal (BOB) formed 80-120 Ma following the breakup of eastern Gondwanaland. Since its formation, it has been affected by the emplacement of two long N-S trending linear aseismic ridges (85°E and Ninetyeast) and by the loading of ca. 20-km of sediments of the Bengal Fan. Here, we present the results of a combined spatial and spectral domain analysis of residual geoid, bathymetry and gravity data constrained by seismic reflection and refraction data. Self-consistent geoid and gravity modelling defined by temperature-dependent mantle densities along a N-S transect in the BOB region revealed that the depth to the lithosphere-asthenosphere boundary (LAB) deepens steeply from 77 km in the south to 127 km in north, with the greater thickness being anomalously thick compared to the lithosphere of similar-age beneath the Pacific Ocean. The Geoid-Topography Ratio (GTR) analysis of the 85°E and Ninetyeast ridges indicate that they are compensated at shallow depths. Effective elastic thickness (Te) estimates obtained through admittance/ coherence analysis as well as the flexural modelling along these ridges led to the conclusions: (i) 85°E Ridge was emplaced in off-ridge environment (Te = 10-15 km); (ii) the higher Te values of ˜25 km over the Afanasy Nikitin Seamount (ANS) reflect the secondary emplacement of the seamount peaks in off-ridge environment, (iii) that the emplacement of the Ninetyeast Ridge north of 2°N occurred in an off-ridge environment as indicated by higher Te values (25-30 km). Furthermore, the admittance analysis of geoid and bathymetry revealed that the admittance signatures at wavelengths >800 km are compensated by processes related to upper mantle convection.

  8. Seasonality of tuberculosis in rural West Bengal: A time series analysis

    Directory of Open Access Journals (Sweden)

    Ranadip Chowdhury

    2013-01-01

    Full Text Available Background: There is a recent concern about the global climatic change that is expected to have broad health impacts. The health effects of extreme weather events include a spectrum of wide variety of impacts. According to a study in Northern India, tuberculosis (TB diagnosis peaked between April and June, and it reached a nadir between October and December. However, no seasonality was reported from South India. Aims: This study is aimed to assess the seasonality of TB in rural West Bengal and to develop a univariate time series model. Settings and Design: Retrospective record-based study was carried out at Amdanga tuberculosis unit (TU, North 24-parganas, West Bengal. Materials and Methods: A total of 1507 new TB cases were registered in the TB register of the TU during January-2008 to December-2011 period were taken for this study. Statistical Analysis: Seasonal adjusted factor (SAF, autocorrelation function (ACF, partial autocorrelation function (PACF, and seasonal autoregressive integrated moving average (SARIMA methods were applied by using the SPSS 16.0 version. Results: ACF and PACF at lag 12 shows significant pick suggesting seasonal component of the TB series. SAF showed peak seasonal variation from March to June and nadir from October to December in additive model. Univariate model by expert-modeler in the SPSS showed SARIMA ((0,0,0(1,2,0 12 could best predict the model with 54.3% variability. Conclusion: A seasonal pattern of TB was observed. This information would be usefulfor administration and managers to take extra care to arrange and provide extra facilities during the peak seasons.

  9. Towards improved storm surge models in the northern Bay of Bengal

    Science.gov (United States)

    Krien, Y.; Testut, L.; Islam, A. K. M. S.; Bertin, X.; Durand, F.; Mayet, C.; Tazkia, A. R.; Becker, M.; Calmant, S.; Papa, F.; Ballu, V.; Shum, C. K.; Khan, Z. H.

    2017-03-01

    The northern Bay of Bengal is home to some of the deadliest cyclones recorded during the last decades. Storm surge models developed for this region significantly improved in recent years, but they still fail to predict patterns of coastal flooding with sufficient accuracy. In the present paper, we make use of a state-of-the art numerical modeling system with improved bathymetric and topographic data to identify the strengths, weaknesses, and to suggest areas for improvement of current storm surge models in this area. The new model is found to perform relatively well in reproducing waves characteristics and maximum water levels for the two extreme cyclones studied here: Phailin (2013) and Sidr (2007). The wave setup turns out to be small compared to the wind-driven surge, although it still plays a significant role for inland flooding. Relatively large tide-surge interactions mainly due to shallow water effects are also evidenced by the model. These findings plead in favor of further efforts to improve the representation of the bathymetry, especially in the nearshore area, and the implementation of models including tides and radiation stresses explicitly. The main limit of the model is its inability to predict the detailed patterns of coastal flooding satisfactorily. The reason lies mainly in the fact that topographic data also need to be further improved. In particular, a good knowledge of embankments characteristics (crest elevation and their condition) is found to be of primary importance to represent inland flooding correctly. Public authorities should take urgent action to ensure that better data are available to the scientific community, so that state-of-the-art storm surge models reaching a sufficiently high level of confidence can be used for emergency preparedness and to implement mitigation strategies in the northern Bay of Bengal.

  10. Clinical management of maggot wounds in Bengal Tigers (Panthera tigris tigris

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    Anup Kumar Talukder

    2017-03-01

    Full Text Available Objecitve: Maggot wound is common in domestic and pet animals but report on maggot wound treatment in wildlife species is scanty. The study reported here the surgical and conservative management of maggot wounds including anesthetic protocol and postoperative care in two Bengal tigers (Panthera tigris tigris. Materials and methods: One female and one male tiger were presented with maggot wounds for treatment at the Bangabandhu Sheikh Mujib Safari Park, Gazipur, Bangladesh. Tigers were anesthetized with combined injection of xylazine (dosed at 1.0 mg/kg bwt, IM and ketamine hydrochloride (dosed at 3.5 mg/kg bwt, IM. Superficial maggots were removed from wounds using sterile tissue forceps. Gauze soaked in oil of turpentine was allowed to remain in each wound pocket for 5 min for the removal of deep-seated maggots. Finally, wounds were dressed with tincture iodine to clean out the dead tissue debris and to induce inflammation for rapid healing. A single subcutaneous injection of ivermectin (dosed at 200 µg/kg bwt, IM was given in each tiger. In addition, long acting oxytetracycline (dosed at 10 mg/kg bwt, IM on 48 h interval for six days, chlorpheniramine maleate (dosed at 1 mg/kg bwt, IM once daily for three days, and ascorbic acid (dosed at 250 mg/tiger, IM once daily for seven days were administered in both tigers. Results: The tigers were recovered successfully without any complications in two weeks following treatment. Conclusion: Surgical management using oil of turpentine and tincture iodine along with parenteral administration of ivermectin, long acting oxytetracycline and chlorpheniramine maleate are effective for successful management of maggot wounds in Bengal tigers. [J Adv Vet Anim Res 2017; 4(1.000: 104-109

  11. Vertical variation of oxygen isotope in Bay of Bengal and its relationships with water masses

    Science.gov (United States)

    Sengupta, S.; Parekh, Anant; Chakraborty, S.; Ravi Kumar, K.; Bose, T.

    2013-12-01

    We present here, for the first time, comprehensive depth specific (near surface to 1800 m) oxygen isotope (δ18O) data set of 175 water samples collected from 22 different locations in the Bay of Bengal (BoB) during July-August 2009 and December-January 2012-2013. The study is aimed to constrain the water mass parameters using oxygen isotope and salinity. Four water masses are identified on the basis of temperature-salinity relationship: (a) Bay of Bengal Water (BoBW; 0-50 m), (b) Mixed Zone (MZ; 60-120 m), (c) Indonesian Throughflow (ITF; 200-500 m), and (d) Indian Ocean Deep Water (IDW; 600-1800 m). Our study shows: (1) δ18O-salinity correlation (slope = 0.15 ± 0.01; intercept = -4.58 ± 0.24; r2 = 0.89; n = 54) for the BoBW is found to be consistent with surface BoB water reported earlier, (2) relatively lower correlation (r2 = 0.24; n = 47) in underlying mixed zone suggesting mixing of various water masses, (3) significant linear correlation between δ18O and salinity in IDW (r2 = 0.70) indicating depleted less saline water from southern hemisphere spread up to 18°N, and (4) vertical profiles at various sampling locations showing a continuous enrichment of δ18O (0.6-0.8‰) within top 60-100 m irrespective of their proximity to coastline. In conjunction with a sharp decrease in Δ14C data below the same depth zone (60-100 m) as reported earlier, we suggest the δ18O value reaches to its acme at a zone of mixing between younger BoBW and relatively older ITF. This preliminary study indicates oxygen isotope and salinity together can be used to identify different water masses in the BoB.

  12. BLOOD PRESSURE AWARENESS AMONG GENERAL POPULATION: A RURAL WEST BENGAL EXPERIENCE WITH LOGISTIC REGRESSION

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    Sanjoy Kumar Sadhukhan

    2012-02-01

    Full Text Available Objectives: The study was conducted with an objective to find out the awareness of self blood pressure in a rural community of West Bengal and factors associated with it. Methods: A community based cross-sectional study on self BP awareness among adults (≥18 years was carried out in a rural community of West Bengal through house to house visits. Total study subjects were1201 (Male=598; Female=603 of which 132 (11% were hypertensive. Results: Only 17.2% of all study subjects were aware of their own BP readings with no male-female difference. This awareness was significantly associated with age, education, economic status and hypertension, which remained significant, even after multiple logistic regressions. Even among hypertensives, only 38% were aware of their self BP. Nearly 67.11% of the study subjects had no knowledge about complications of hypertension. About 86.92% of the study subjects were ignorant about the life style changes required to prevent hypertension. Regarding hypertension control/treatment, 72.85% of study subjects were unaware. In general, males had better knowledge compared to females,although not always statistically significant. Conclusion: Self BP awareness among this study population was very poor even among the hypertensives leading to a high risk of cerebrovascular accidents and coronary heart diseases. Interpersonal communication in medical facilities as well as other strategies like group-discussions (general and focal, mass media and general education system can be utilized to improve the situation. [National J of Med Res 2012; 2(1.000: 55-58

  13. CHANGING EPIDEMIOLOGICAL TREND OF CHOLERA IN WEST BENGAL: THE GIANT IS BACK

    Directory of Open Access Journals (Sweden)

    Indrani

    2013-11-01

    Full Text Available ABSTRACT: Choler a is a devastating diarrheal disease caused by V. cholera. Two biotypes of V. cholerae O1, classical and El - Tor, are distinguished. Each biotype is further subdivided into two serotypes, termed Inaba and Ogawa. As large deltaic areas of the Ganges and Brah maputra rivers are considered to be the homeland of cholera, objective of our study was to detect the circulating strain of Vibrio causing Cholera outbreaks in different pockets of West Bengal. Water samples collected from the water sources of the affected areas and stool samples and or rectal swabs of suspected cases were tested according to standard bacteriological protocol. In July 2008, Cholera outbreak was caused by Vibrio cholera e O1 El - Tor Inaba serotype in Darjeeling district affecting 176 persons. Mean age of the affected people was 15years. Thereafter in the June, 2010, there was an outbreak of Vibrio cholerae El Tor Ogawa affecting 87 people in Maldah. Mean age of the cases was 25years. Similar type of Vibrio cholerae O1 El - Tor Ogawa strain was is olated in the outbreak of June to September 2012 in Maldah with lower mean age of cases i.e.7years. A total of 93 patients suffered from Cholera during this outbreak. Cholera outbreak in West Bengal was caused by classical Vibrio cholerae O1 Ogawa serotype affecting 803 people in North 24 Paragana in October, 2013. Mean age of the patients was 31year. As classical Vibrio causes more severe disease than El - Tor, its reemergence with multidrug resistant properties is no doubt an upcoming threat

  14. Some salient features of the atmosphere observed over the north Bay of Bengal during BOBMEX

    Indian Academy of Sciences (India)

    G S Bhat

    2003-06-01

    This paper describes the near surface characteristics and vertical variations based on the observations made at 17.5°N and 89°E from ORV Sagar Kanya in the north Bay of Bengal during the Bay of Bengal Monsoon Experiment (BOBMEX) carried out in July-August 1999. BOBMEX captured both the active and weak phases of convection. SST remained above the convection threshold throughout the BOBMEX. While the response of the SST to atmospheric forcing was clearly observed, the response of the atmosphere to SST changes was not clear. SST decreased during periods of large scale precipitation, and increased during a weak phase of convection. It is shown that the latent heat flux at comparable wind speeds was about 25-50% lower over the Bay during BOBMEX compared to that over the Indian Ocean during other seasons and tropical west Pacific. On the other hand, the largest variations in the surface daily net heat flux are observed over the Bay during BOBMEX. SST predicted using observed surface fluxes showed that 1-D heat balance model works sometime but not always, and horizontal advection is important. The high resolution Vaisala radiosondes launched during BOBMEX could clearly bring out the changes in the vertical structure of the atmosphere between active and weak phases of convection. Convective Available Potential Energy of the surface air decreased by 2-3 kJ kg−1 following convection, and recovered in a time period of one or two days. The mid tropospheric relative humidity and water vapor content, and wind direction show the major changes between the active and weak phases of convection.

  15. Nomophobic behaviors among smartphone using medical and engineering students in two colleges of West Bengal.

    Science.gov (United States)

    Dasgupta, Pallabi; Bhattacherjee, Sharmistha; Dasgupta, Samir; Roy, Jayanta Kumar; Mukherjee, Abhijit; Biswas, Romy

    2017-01-01

    Growing smartphone usage among global and Indian college students has resulted in considerable issues of "nomophobia" (NMP) or feelings of discomfort or anxiety experienced by individuals whenever unable to use their smartphones. This significantly impacts their health, work, and study. The objective of this study is to find out the prevalence of NMP among smartphone using medical and engineering undergraduates of West Bengal and to compare the nomophobic behaviors, its predictors, and smartphone usage among them. A cross-sectional study was conducted among 303 medical and 305 engineering undergraduates in West Bengal using a validated NMP questionnaire consisting of four factors. Comparison of means of individual questions and factor scores was done. Nomophobic clusters among the two groups were identified using two-stage cluster analysis. Binary logistic regression was used for comparison of predictors of NMP. Engineering students showed a higher proportion of nomophobics (44.6%) than medical students (42.6%). Significant higher means was observed among engineering students for the factor "giving upconvenience" and individual variables like "scared due to running out of battery," "nervous due to disconnection from online identity," "uncomfortable when unable stay up-to-date with social media" and "anxious when unable to check E-mails." A Higher proportion of nomophobics among both groups were females, those owning smartphone beyond 2 years, having monthly mobile bill above Rs. 200 and spending over 4 h daily on smartphone. NMP has emerged as a significant cause of concern among both the groups. Standardized measures for identification and appropriate psychobehavioral therapy for those seeking help might alleviate the problem.

  16. How bacterial cell division might cheat turgor pressure - a unified mechanism of septal division in Gram-positive and Gram-negative bacteria.

    Science.gov (United States)

    Erickson, Harold P

    2017-08-01

    An important question for bacterial cell division is how the invaginating septum can overcome the turgor force generated by the high osmolarity of the cytoplasm. I suggest that it may not need to. Several studies in Gram-negative bacteria have shown that the periplasm is isoosmolar with the cytoplasm. Indirect evidence suggests that this is also true for Gram-positive bacteria. In this case the invagination of the septum takes place within the uniformly high osmotic pressure environment, and does not have to fight turgor pressure. A related question is how the V-shaped constriction of Gram-negative bacteria relates to the plate-like septum of Gram-positive bacteria. I collected evidence that Gram-negative bacteria have a latent capability of forming plate-like septa, and present a model in which septal division is the basic mechanism in both Gram-positive and Gram-negative bacteria. © 2017 WILEY Periodicals, Inc.

  17. Postantibiotic effect of ceftaroline against gram-positive organisms.

    Science.gov (United States)

    Pankuch, G A; Appelbaum, P C

    2009-10-01

    The postantibiotic effects (PAEs), postantibiotic sub-MIC effects (PA-SMEs), and sub-MIC effects (SMEs) of ceftaroline, a novel injectable cephalosporin, were determined for 15 gram-positive organisms. The pneumococcal, staphylococcal, and enterococcal PAEs were 0.8 to 1.8 h, 0.7 to 2.2 h, and 0.2 to 1.1 h, respectively. The corresponding PA-SMEs (0.4 times the MIC) were 2.5 to 6.7 h, 2.9 to >0.0 h, and 7.9 to >10.3 h, respectively. The PA-SMEs were longer than the PAEs, suggesting that sub-MIC levels extend the PAE of ceftaroline against gram-positive cocci.

  18. Bovine mastitis caused by gram negative bacteria in Mosul

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    S. Y. A. Al-Dabbagh

    2012-01-01

    Full Text Available A total of 90 milk samples were collected from cows with clinical and subclinical mastitis from different areas in Mosul city, in a period from October 2009 to June 2010, for the detection of gram negative bacteriological causative agents. The bacteria were identified using morphological, cultural and biochemical characteristics. thirty tow (35.3% gram negative bacterial isolates were obtained from the total count which included 14 isolates (15.5% for Escherichia coli, 7 isolates (7.7% for Klebsiella spp, 4 isolates (4.4% for Pseudomonas aeruginosa, 3 isolates (3.3% for Enterobacter aerogenes ,2 isolates for Serratia marcescens and one isolates (1.1% for each of Aeromonas hydrophila and Pasteurella multocida. Results of antibiotic sensitivity test indicated that most of these isolates were sensitive to Ciprofloxacin following by Gentamycin and Cotrimoxazole, while most of these organisms were resistant to Ampicillin, the isolates showed different percentages of sensitivity to Doxycycline, Tetracycline, Neomycin and Chloramphenicol.

  19. Bacteriocins from Gram-Negative Bacteria: A Classification?

    Science.gov (United States)

    Rebuffat, Sylvie

    Bacteria produce an arsenal of toxic peptides and proteins, which are termed bacteriocins and play a role in mediating the dynamics of microbial populations and communities. Bacteriocins from Gram-negative bacteria arise mainly from Enterobacteriaceae. They assemble into two main families: high molecular mass modular proteins (30-80 kDa) termed colicins and low molecular mass peptides (between 1 and 10 kDa) termed microcins. The production of colicins is mediated by the SOS response regulon, which plays a role in the response of many bacteria to DNA damages. Microcins are highly stable hydrophobic peptides that are produced under stress conditions, particularly nutrient depletion. Colicins and microcins are found essentially in Escherichia coli, but several other Gram-negative species also produce bacteriocin-like substances. This chapter presents the basis of a classification of colicins and microcins.

  20. An Eco-friendly, Scaled-down Gram Stain Protocol

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    Ruth A. Gyure

    2010-04-01

    Full Text Available Currently, flushing large volumes of Gram stain reagents into sanitary sewage systems is no longer acceptable. These chemical wastes are highly regulated and must be collected, labeled, and disposed of in a responsible manner, usually by paying a commercial service to remove them to an authorized off-site facility. Such services are costly and, as expected, costs are proportional to volume of collected waste. This “old” method of Gram staining, even if effluent is collected, generates a high volume of liquid waste which is unnecessarily diluted with additional large volumes of water from the rinsing steps. The purpose of using this scaled-down and eco-friendly protocol is to dramatically reduce the amount of liquid waste produced without sacrificing quality of results. This protocol is flexible, practical, and easy to implement. It does not require students to work at a bench sink, reduces user cost, and lowers environmental impact overall.

  1. La Gramática Discursivo-Funcional

    NARCIS (Netherlands)

    Hengeveld, K.; Mackenzie, J.L.

    2011-01-01

    La Gramática Discursivo-Funcional (GDF) es una teoría funcional del lenguaje de inspiración tipológica que presenta una organización descendente (top-down) con el objeto de alcanzar la adecuación psicológica y que toma el Acto Discursivo como unidad básica de análisis para lograr la adecuación

  2. Gram-negative bacterial molecules associate with Alzheimer disease pathology

    Science.gov (United States)

    Stamova, Boryana; Jin, Lee-Way; DeCarli, Charles; Phinney, Brett; Sharp, Frank R.

    2016-01-01

    Objective: We determined whether Gram-negative bacterial molecules are associated with Alzheimer disease (AD) neuropathology given that previous studies demonstrate Gram-negative Escherichia coli bacteria can form extracellular amyloid and Gram-negative bacteria have been reported as the predominant bacteria found in normal human brains. Methods: Brain samples from gray and white matter were studied from patients with AD (n = 24) and age-matched controls (n = 18). Lipopolysaccharide (LPS) and E coli K99 pili protein were evaluated by Western blots and immunocytochemistry. Human brain samples were assessed for E coli DNA followed by DNA sequencing. Results: LPS and E coli K99 were detected immunocytochemically in brain parenchyma and vessels in all AD and control brains. K99 levels measured using Western blots were greater in AD compared to control brains (p < 0.01) and K99 was localized to neuron-like cells in AD but not control brains. LPS levels were also greater in AD compared to control brain. LPS colocalized with Aβ1-40/42 in amyloid plaques and with Aβ1-40/42 around vessels in AD brains. DNA sequencing confirmed E coli DNA in human control and AD brains. Conclusions: E coli K99 and LPS levels were greater in AD compared to control brains. LPS colocalized with Aβ1-40/42 in amyloid plaques and around vessels in AD brain. The data show that Gram-negative bacterial molecules are associated with AD neuropathology. They are consistent with our LPS-ischemia-hypoxia rat model that produces myelin aggregates that colocalize with Aβ and resemble amyloid-like plaques. PMID:27784770

  3. Multiple antibiotic resistance among gram negative bacteria isolated from poultry.

    Science.gov (United States)

    Ansari, F A; Khatoon, H

    1994-03-01

    Gram negative bacteria, including species of Salmonella, Escherichia, Pseudomonas and Klebsiella, isolated from poultry, were screened for their resistance to the commonly used antibiotics: ampicillin, chloramphenicol, gentamycin, kanamycin, neomycin, polymyxin B, streptomycin and tetracycline. Of the 500 bacteria screened, 351 were found to be resistant to one or more antibiotics at the level of 50 micrograms/ml. Various patterns of antibiotic resistance observed during these studies have been reported.

  4. THERAPEUTIC IMPORTANCE OF OLDER GENERATION ANTIBIOTICS ON GRAM NEGATIVE ISOLATES

    OpenAIRE

    B.Lakshmi, M.Swarajya Lakshmi, Rohini

    2015-01-01

    Introduction: Drug resistance is a serious medical problem. Indiscriminate use of antibiotics has led to a state where multi drug resistant bacteria have become increasingly prevalent. Therefore regular surveillance of important pathogens and their resistant pattern is mandatory. Aim: To find out prevalence of organisms causing infection and their sensitivity pattern. Material and methods: 676 clinical samples were screened among which 156 Gram Negative(GN) Isolates were processed for their a...

  5. THERAPEUTIC IMPORTANCE OF OLDER GENERATION ANTIBIOTICS ON GRAM NEGATIVE ISOLATES

    OpenAIRE

    Lakshmi; Swarajya Lakshmi; Rohini,

    2015-01-01

    Drug resistance is a serious medical problem. Indiscriminate use of antibiotics has led to a state where multi-drug resistant bacteria have become increasingly prevalent. Therefore regular surveillance of important pathogens and their resistant pattern is mandatory. AIM To find out prevalence of organisms causing infection and their sensitivity pattern. MATERIAL AND METHODS 676 clinical samples were screened, among which 156 Gram Negative (GN) Isolates were ...

  6. La Gramática Discursivo-Funcional

    NARCIS (Netherlands)

    Hengeveld, K.; Mackenzie, J.L.

    2011-01-01

    La Gramática Discursivo-Funcional (GDF) es una teoría funcional del lenguaje de inspiración tipológica que presenta una organización descendente (top-down) con el objeto de alcanzar la adecuación psicológica y que toma el Acto Discursivo como unidad básica de análisis para lograr la adecuación pragm

  7. Antimicrobial activity of metal oxide nanoparticles against Gram-positive and Gram-negative bacteria: a comparative study

    Directory of Open Access Journals (Sweden)

    Azam A

    2012-12-01

    Full Text Available Ameer Azam,1,2 Arham S Ahmed,2 Mohammad Oves,3 Mohammad S Khan,3 Sami S Habib,1 Adnan Memic11Centre of Nanotechnology, King Abdulaziz University, Jeddah, Saudi Arabia; 2Centre of Excellence in Materials Science (Nanomaterials, 3Department of Agricultural Microbiology, Aligarh Muslim University, Aligarh, IndiaBackground: Nanomaterials have unique properties compared to their bulk counterparts. For this reason, nanotechnology has attracted a great deal of attention from the scientific community. Metal oxide nanomaterials like ZnO and CuO have been used industrially for several purposes, including cosmetics, paints, plastics, and textiles. A common feature that these nanoparticles exhibit is their antimicrobial behavior against pathogenic bacteria. In this report, we demonstrate the antimicrobial activity of ZnO, CuO, and Fe2O3 nanoparticles against Gram-positive and Gram-negative bacteria.Methods and results: Nanosized particles of three metal oxides (ZnO, CuO, and Fe2O3 were synthesized by a sol–gel combustion route and characterized by X-ray diffraction, Fourier-transform infrared spectroscopy, and transmission electron microscopy techniques. X-ray diffraction results confirmed the single-phase formation of all three nanomaterials. The particle sizes were observed to be 18, 22, and 28 nm for ZnO, CuO, and Fe2O3, respectively. We used these nanomaterials to evaluate their antibacterial activity against both Gram-negative (Escherichia coli and Pseudomonas aeruginosa and Gram-positive (Staphylococcus aureus and Bacillus subtilis bacteria.Conclusion: Among the three metal oxide nanomaterials, ZnO showed greatest antimicrobial activity against both Gram-positive and Gram-negative bacteria used in this study. It was observed that ZnO nanoparticles have excellent bactericidal potential, while Fe2O3 nanoparticles exhibited the least bactericidal activity. The order of antibacterial activity was demonstrated to be the following: ZnO > CuO > Fe2O3

  8. Sensitization of Gram-Negative Bacilli to Host Antibacterial Proteins.

    Science.gov (United States)

    Jammal, Joanna; Zaknoon, Fadia; Kaneti, Galoz; Hershkovits, Ayelet S; Mor, Amram

    2017-05-15

    To address the need for novel alternatives to antibiotics, we attempted to sensitize gram-negative bacilli to innate antibacterial protagonists. We report a lipopeptide-like sequence (C10OOc12O) that inflicted outer membrane damage at a low micromolar range, whereas measurable bacterial growth inhibition in broth medium required >10-fold higher concentrations. In serum, however, C10OOc12O induced antibacterial activity in a manner suppressible by anticomplement antibodies or heat treatment and acted synergistically with exogenous lysozyme in broth and serum media. Upon subcutaneous administration, C10OOc12O exhibited high circulating levels that correlated with significant therapeutic efficacies, using either the mouse peritonitis-sepsis model or the thigh infection model. These findings are consistent with the view that, by damaging the outer membrane, C10OOc12O was able to enhance gram-negative bacilli susceptibility to antibacterial components of the immune humoral arm. Such lipopeptides may therefore be useful in fighting gram-negative bacilli threats through sensitization to endogenous and/or exogenous antibacterial proteins such as lysozyme and complements. © The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

  9. Keywords in Context (Using n-grams with Python

    Directory of Open Access Journals (Sweden)

    William J. Turkel

    2012-07-01

    Full Text Available Like in Output Data as HTML File, this lesson takes the frequency pairs collected in Counting Frequencies and outputs them in HTML. This time the focus is on keywords in context (KWIC which creates n-grams from the original document content – in this case a trial transcript from the Old Bailey Online. You can use your program to select a keyword and the computer will output all instances of that keyword, along with the words to the left and right of it, making it easy to see at a glance how the keyword is used. Once the KWICs have been created, they are then wrapped in HTML and sent to the browser where they can be viewed. This reinforces what was learned in Output Data as HTML File, opting for a slightly different output. At the end of this lesson, you will be able to extract all possible n-grams from the text. In the next lesson, you will be learn how to output all of the n-grams of a given keyword in a document downloaded from the Internet, and display them clearly in your browser window.

  10. Antibiotic Resistance Pattern of Gram-Negative Bacteria in Gorgan

    Directory of Open Access Journals (Sweden)

    Golsha, R. (MD

    2014-06-01

    Full Text Available Background and Objective: The excessive use of broad-spectrum antibiotics will lead to drug resistance of microorganism and specially nosocomial organisms. Because of high incidence of antibiotic resistance in hospitals, we aimed to study antibiotic resistance to gram negative bacteria. Material and Methods: This cross-sectional study was conducted on the data of biological samples (2006-2008, with positive culture result. Using antibiogram, microbial resistance to isolated microorganism was determined, and after culturing the samples, bacteria were identified by using differential media and antiserum. Then, antibiotic resistance was performed by disk diffusion. Results: The most common gram-negative microorganism obtained from all cultures was E.coli with the lowest drug resistance to Nitrofurantoin. Conclusion: Based on the results, antimicrobial resistance pattern is not the same in different places and furthermore it is ever changing. Therefore, further research is needed to be done to have an accurate pattern of antibiotic resistance to provide effective treatment regimens. Key words: Antibiotic Resistance; Disk Diffusion; Gram Negative Bacteria; Gorgan

  11. [The rise of resistant gram-negative bacteria].

    Science.gov (United States)

    Kuijper, Ed J; van Dissel, Jaap T

    2010-01-01

    During the past few years there has been a global spread of resistant gram-negative bacteria that are insensitive to cephalosporins and carbapenems. Extended spectrum beta-lactamase (ESBL)-producing bacteria are capable of inactivating the newest generation of cephalosporins. It is notable that ESBL-producing bacteria are found predominantly outside the hospital situation in the environment, in food and in meat products, which leads to the presumption that the food chain is contributing to the rapid spread of these bacteria. Several types of carbapenemase-producing bacteria have been distinguished, of which the 'New Delhi metallo beta-lactamase 1 (NDM-1)' type seems to be prevalent in Asia outside the hospital situation in the community, and is now being transmitted to other continents as a result of migration and tourism. With the rise of ESBL- and carbapenemase-producing gram-negative bacteria (which are also often resistant to most other antibiotics) comes the very real concern that treatment of infections such as urinary tract infections that are currently simple to treat with common oral antibiotics will be problematic in the future. The widespread use of antibiotics in animal husbandry is an important factor in the problem of antibiotic resistance. Since economic motives are of importance, a coordinated approach from many parties concerned will be necessary, not just from the medical sector but also from the veterinary and agricultural world, and from food producers and pharmaceutical companies to combat the spread of multiresistant gram-negative bacteria effectively.

  12. Development of nested polymerase chain reaction-based diagnosis of duck enteritis virus and detection of DNA polymerase gene from non-descriptive duck breeds of West Bengal, India

    National Research Council Canada - National Science Library

    Partha Sarathi Mandal; Sunit Kumar Mukhopadhayay; Saktipada Pradhan; Samiran Mondal; Chandrakanta Jana; Nimai Chandra Patra; Rabindra Nath Hansda

    2017-01-01

    ...) infected eggs, and histopathological changes of chorioallantoic membrane (CAM) in non-descriptive ducks of West Bengal with special reference to standardize nested polymerase chain reaction (PCR...

  13. Screening of mercury-resistant and indole-3-acetic acid producing bacterial-consortium for growth promotion of Cicer arietinum L.

    Science.gov (United States)

    Amin, Aatif; Latif, Zakia

    2017-03-01

    Mercury resistant (Hg(R) ) bacteria were screened from industrial effluents and effluents-polluted rhizosphere soils near to districts Kasur and Sheikhupura, Pakistan. Out of 60 isolates, three bacterial strains, Bacillus sp. AZ-1, Bacillus cereus AZ-2, and Enterobacter cloacae AZ-3 showed Hg-resistance as 20 μg ml(-1) of HgCl2 and indole-3-acetic acid (IAA) production as 8-38 μg ml(-1) . Biochemical and molecular characterization of selected bacteria was confirmed by 16S ribotyping. Mercury resistant genes merA, merB, and merE of mer operon in Bacillus spp. were checked by PCR amplification. The merE gene involved in the transportation of elemental mercury (Hg(0) ) via cell membrane was first time cloned into pHLV vector and transformed in C43(DE3) Escherichia coli cells. The recombinant plasmid (pHLMerE) was expressed and purified by nickel (Ni(+2) ) affinity chromatography. Chromatographic techniques viz. thin layer chromatography (TLC), high performance liquid chromatography (HPLC), and Gas chromatography-mass spectrometry (GC-MS) confirmed the presence of Indole-3-acetic acid (IAA) in supernatant of selected bacteria. The strain E. cloacae AZ-3 detoxified 88% of mercury (Hg(+2) ) from industrial effluent (p mercury amended soil with 20 μg ml(-1) HgCl2 resulted 80, 22, 64, 116, 50, 75, 30, and 100% increase as compared to control plants in seed germination, shoot and root length, shoot and root fresh weight, number of pods per plant, number of seeds and weight of seeds, respectively, of chickpea (Cicer arietinum L.) in pot experiments (p < 0.05).

  14. Respuesta del garbanzo (Cicer arietinum L. a la inoculación con Azotobacter vineladii y Burkholderia cepacia a dosis reducida de fertilizante nitrogenado

    Directory of Open Access Journals (Sweden)

    Juan Manuel Sánchez-Yáñez

    2014-01-01

    Full Text Available ResumenEl cultivo de garbanzo “Cicer arietinumL.” demanda fertilizante nitrogenado (FN, que aplicado en excesoprovoca pérdida de fertilidad del suelo y contaminación ambiental. Una alternativa para este problema es lareducción y optimización de la dosis de FN, con inoculantes a base de bacteriaspromotoras de crecimientovegetal (BPCV.Así, el objetivo de este trabajo fue analizar la respuesta del garbanzo a la inoculación conAzotobactervinelandiiyBurkholderiacepaciaa la dosis 50% del FN. Para ello se utilizó un diseñoexperimental de bloques al azar. Con nitrato de amonio (NO3NH4 como FN a las dosis 100% (10g/L y 50 %(5g/L para el garbanzo inoculado con las BPCV; con las variables/respuesta en su semilla: por ciento (% degerminación; luego su fenotípia y biomasa aérea y radical, los datos experimentales se analizaron por ANOVAy Tukey. Los resultados indicaron una respuesta positiva de la semilla de garbanzo a la doble inoculación conambas BPCV, al igual que aplántula y floración, donde el garbanzo alcanzo un peso seco total (PST de 0,82g, valor estadísticamente diferente y significativo, comparado con los 0,71g de PST del garbanzo sin inocularcon el FN al 100% o control relativo (CR. Lo anterior sugiereuna respuesta positiva del garbanzo queoptimizó la dosis 50% del FN, por una acción sinérgica de los dos géneros de BPCV en sus raíces, lo quepodría evitar en parte la perdida de fertilidad del suelo y la contaminación ambiental, por la aplicación enexceso del FN.

  15. Endophytic Bacteria Improve Plant Growth, Symbiotic Performance of Chickpea (Cicer arietinum L. and Induce Suppression of Root Rot Caused by Fusarium solani under Salt Stress

    Directory of Open Access Journals (Sweden)

    Dilfuza Egamberdieva

    2017-09-01

    Full Text Available Salinity causes disturbance in symbiotic performance of plants, and increases susceptibility of plants to soil-borne pathogens. Endophytic bacteria are an essential determinant of cross-tolerance to biotic and abiotic stresses in plants. The aim of this study was to isolate non–rhizobial endophytic bacteria from the root nodules of chickpea (Cicer arietinum L., and to assess their ability to improve plant growth and symbiotic performance, and to control root rot in chickpea under saline soil conditions. A total of 40 bacterial isolates from internal root tissues of chickpea grown in salinated soil were isolated. Four bacterial isolates, namely Bacillus cereus NUU1, Achromobacter xylosoxidans NUU2, Bacillus thuringiensis NUU3, and Bacillus subtilis NUU4 colonizing root tissue demonstrated plant beneficial traits and/or antagonistic activity against F. solani and thus were characterized in more detail. The strain B. subtilis NUU4 proved significant plant growth promotion capabilities, improved symbiotic performance of host plant with rhizobia, and promoted yield under saline soil as compared to untreated control plants under field conditions. A combined inoculation of chickpea with M. ciceri IC53 and B. subtilis NUU4 decreased H2O2 concentrations and increased proline contents compared to the un-inoculated plants indicating an alleviation of adverse effects of salt stress. Furthermore, the bacterial isolate was capable to reduce the infection rate of root rot in chickpea caused by F. solani. This is the first report of F. solani causing root rot of chickpea in a salinated soil of Uzbekistan. Our findings demonstrated that the endophytic B. subtilis strain NUU4 provides high potentials as a stimulator for plant growth and as biological control agent of chickpea root rot under saline soil conditions. These multiple relationships could provide promising practical approaches to increase the productivity of legumes under salt stress.

  16. Purfication and properties of a specific isoflavone 7-O-glucoside-6''-malonate malonyestrase from roots of chickpea (Cicer arietinum L.).

    Science.gov (United States)

    Hinderer, W; Köster, J; Barz, W

    1986-08-01

    Protein extracts from roots of chickpea (Cicer arietinum L.) plants contained high esterase activity hydrolyzing malonate hemiesters of isoflavone 7-O-glucosides. Using 5,7-dihydroxy-4'-methoxyisoflavone (biochanin A) 7-O-glucoside-6"-malonate as a substrate, a specific malonylesterase was purified about 700-fold to near homogeneity. The purified enzyme possesses an extremely low enzyme activity with synthetic esterase substrates. Various putative nonspecific esterases, as tested with alpha-naphthylacetate, were removed during enzyme purification. The malonylesterase demonstrated a very high molecular mass in gel chromatography and in sedimentation analyses with sucrose gradients (greater than or equal to 2 X 10(6)). Analytical sodium dodecyl sulfate-polyacrylamide gel electrophoresis pointed to a single subunit of 32,000. The catalyzed reaction showed a pH optimum at 7.5 and a temperature optimum between 30 and 35 degrees C. The apparent Km for biochanin A 7-O-glucoside-6"-malonate was (4.2 +/- 1.2) X 10(-4) M. The malonylesterase was insensitive to the esterase inhibitors eserine and neostigmine (10(-3) M) as well as phenylmethylsulfonyl fluoride, paraoxon, and diisopropylfluorophosphate (10(-4) M). On the other hand enzyme activity was totally inhibited by Hg2+ ions (10(-5) M) and p-hydroxymercuribenzoate (10(-4) M), whereas iodoacetamide (10(-6)-10(-4) M) inhibited only partially. Di- and tricarboxylic acids strongly stimulated enzyme activity at 10(-2) M. These properties indicate that the malonylesterase from chickpea roots greatly differs from other known esterases. The possible biological function of the specific malonylesterase is discussed in relation to isoflavone conjugate metabolism in chickpea.

  17. WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis with Medicago truncatula WRKY family and characterization of group-III gene(s).

    Science.gov (United States)

    Kumar, Kamal; Srivastava, Vikas; Purayannur, Savithri; Kaladhar, V Chandra; Cheruvu, Purnima Jaiswal; Verma, Praveen Kumar

    2016-06-01

    The WRKY genes have been identified as important transcriptional modulators predominantly during the environmental stresses, but they also play critical role at various stages of plant life cycle. We report the identification of WRKY domain (WD)-encoding genes from galegoid clade legumes chickpea (Cicer arietinum L.) and barrel medic (Medicago truncatula). In total, 78 and 98 WD-encoding genes were found in chickpea and barrel medic, respectively. Comparative analysis suggests the presence of both conserved and unique WRKYs, and expansion of WRKY family in M. truncatula primarily by tandem duplication. Exclusively found in galegoid legumes, CaWRKY16 and its orthologues encode for a novel protein having a transmembrane and partial Exo70 domains flanking a group-III WD. Genomic region of galegoids, having CaWRKY16, is more dynamic when compared with millettioids. In onion cells, fused CaWRKY16-EYFP showed punctate fluorescent signals in cytoplasm. The chickpea WRKY group-III genes were further characterized for their transcript level modulation during pathogenic stress and treatments of abscisic acid, jasmonic acid, and salicylic acid (SA) by real-time PCR. Differential regulation of genes was observed during Ascochyta rabiei infection and SA treatment. Characterization of A. rabiei and SA inducible gene CaWRKY50 showed that it localizes to plant nucleus, binds to W-box, and have a C-terminal transactivation domain. Overexpression of CaWRKY50 in tobacco plants resulted in early flowering and senescence. The in-depth comparative account presented here for two legume WRKY genes will be of great utility in hastening functional characterization of crop legume WRKYs and will also help in characterization of Exo70Js. © The Author 2016. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

  18. Mechanisms of physiological adjustment of N2 fixation in Cicer arietinum L. (chickpea) during early stages of water deficit: single or multi-factor controls.

    Science.gov (United States)

    Nasr Esfahani, Maryam; Sulieman, Saad; Schulze, Joachim; Yamaguchi-Shinozaki, Kazuko; Shinozaki, Kazuo; Tran, Lam-Son Phan

    2014-09-01

    Drought negatively impacts symbiotic nitrogen fixation (SNF) in Cicer arietinum L. (chickpea), thereby limiting yield potential. Understanding how drought affects chickpea nodulation will enable the development of strategies to biotechnologically engineer chickpea varieties with enhanced SNF under drought conditions. By analyzing carbon and nitrogen metabolism, we studied the mechanisms of physiological adjustment of nitrogen fixation in chickpea plants nodulated with Mesorhizobium ciceri during both drought stress and subsequent recovery. The nitrogenase activity, levels of several key carbon (in nodules) and nitrogen (in both nodules and leaves) metabolites and antioxidant compounds, as well as the activity of related nodule enzymes were examined in M. ciceri-inoculated chickpea plants under early drought stress and subsequent recovery. Results indicated that drought reduced nitrogenase activity, and that this was associated with a reduced expression of the nifK gene. Furthermore, drought stress promoted an accumulation of amino acids, mainly asparagine in nodules (but not in leaves), and caused a cell redox imbalance in nodules. An accumulation of organic acids, especially malate, in nodules, which coincided with the decline of nodulated root respiration, was also observed under drought stress. Taken together, our findings indicate that reduced nitrogenase activity occurring at early stages of drought stress involves, at least, the inhibition of respiration, nitrogen accumulation and an imbalance in cell redox status in nodules. The results of this study demonstrate the potential that the genetic engineering-based improvement of SNF efficiency could be applied to reduce the impact of drought on the productivity of chickpea, and perhaps other legume crops. © 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.

  19. The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor.

    Science.gov (United States)

    Deokar, Amit A; Kondawar, Vishwajith; Kohli, Deshika; Aslam, Mohammad; Jain, Pradeep K; Karuppayil, S Mohan; Varshney, Rajeev K; Srinivasan, Ramamurthy

    2015-01-01

    The AP2/ERF family is one of the largest transcription factor gene families that are involved in various plant processes, especially in response to biotic and abiotic stresses. Complete genome sequences of one of the world's most important pulse crops chickpea (Cicer arietinum L.), has provided an important opportunity to identify and characterize genome-wide ERF genes. In this study, we identified 120 putative ERF genes from chickpea. The genomic organization of the chickpea ERF genes suggested that the gene family might have been expanded through the segmental duplications. The 120 member ERF family was classified into eleven distinct groups (I-X and VI-L). Transcriptional factor CarERF116, which is differentially expressed between drought tolerant and susceptible chickpea cultivar under terminal drought stress has been identified and functionally characterized. The CarERF116 encodes a putative protein of 241 amino acids and classified into group IX of ERF family. An in vitro CarERF116 protein-DNA binding assay demonstrated that CarERF116 protein specifically interacts with GCC box. We demonstrate that CarERF116 is capable of transactivation activity of and show that the functional transcriptional domain lies at the C-terminal region of the CarERF116. In transgenic Arabidopsis plants overexpressing CarERF116, significant up-regulation of several stress related genes were observed. These plants also exhibit resistance to osmotic stress and reduced sensitivity to ABA during seed germination. Based on these findings, we conclude that CarERF116 is an abiotic stress responsive gene, which plays an important role in stress tolerance. In addition, the present study leads to genome-wide identification and evolutionary analyses of chickpea ERF gene family, which will facilitate further research on this important group of genes and provides valuable resources for comparative genomics among the grain legumes.

  20. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.

    Science.gov (United States)

    Hiremath, Pavana J; Farmer, Andrew; Cannon, Steven B; Woodward, Jimmy; Kudapa, Himabindu; Tuteja, Reetu; Kumar, Ashish; Bhanuprakash, Amindala; Mulaosmanovic, Benjamin; Gujaria, Neha; Krishnamurthy, Laxmanan; Gaur, Pooran M; Kavikishor, Polavarapu B; Shah, Trushar; Srinivasan, Ramamurthy; Lohse, Marc; Xiao, Yongli; Town, Christopher D; Cook, Douglas R; May, Gregory D; Varshney, Rajeev K

    2011-10-01

    Chickpea (Cicer arietinum L.) is an important legume crop in the semi-arid regions of Asia and Africa. Gains in crop productivity have been low however, particularly because of biotic and abiotic stresses. To help enhance crop productivity using molecular breeding techniques, next generation sequencing technologies such as Roche/454 and Illumina/Solexa were used to determine the sequence of most gene transcripts and to identify drought-responsive genes and gene-based molecular markers. A total of 103,215 tentative unique sequences (TUSs) have been produced from 435,018 Roche/454 reads and 21,491 Sanger expressed sequence tags (ESTs). Putative functions were determined for 49,437 (47.8%) of the TUSs, and gene ontology assignments were determined for 20,634 (41.7%) of the TUSs. Comparison of the chickpea TUSs with the Medicago truncatula genome assembly (Mt 3.5.1 build) resulted in 42,141 aligned TUSs with putative gene structures (including 39,281 predicted intron/splice junctions). Alignment of ∼37 million Illumina/Solexa tags generated from drought-challenged root tissues of two chickpea genotypes against the TUSs identified 44,639 differentially expressed TUSs. The TUSs were also used to identify a diverse set of markers, including 728 simple sequence repeats (SSRs), 495 single nucleotide polymorphisms (SNPs), 387 conserved orthologous sequence (COS) markers, and 2088 intron-spanning region (ISR) markers. This resource will be useful for basic and applied research for genome analysis and crop improvement in chickpea. Plant Biotechnology Journal © 2011 Society for Experimental Biology, Association of Applied Biologists and Blackwell Publishing Ltd. No claim to original US government works.