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Sample records for beggiatoa spp mat

  1. Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep.

    Directory of Open Access Journals (Sweden)

    Karen G Lloyd

    Full Text Available BACKGROUND: Subsurface fluids from deep-sea hydrocarbon seeps undergo methane- and sulfur-cycling microbial transformations near the sediment surface. Hydrocarbon seep habitats are naturally patchy, with a mosaic of active seep sediments and non-seep sediments. Microbial community shifts and changing activity patterns on small spatial scales from seep to non-seep sediment remain to be examined in a comprehensive habitat study. METHODOLOGY/PRINCIPAL FINDINGS: We conducted a transect of biogeochemical measurements and gene expression related to methane- and sulfur-cycling at different sediment depths across a broad Beggiatoa spp. mat at Mississippi Canyon 118 (MC118 in the Gulf of Mexico. High process rates within the mat ( approximately 400 cm and approximately 10 cm from the mat's edge contrasted with sharply diminished activity at approximately 50 cm outside the mat, as shown by sulfate and methane concentration profiles, radiotracer rates of sulfate reduction and methane oxidation, and stable carbon isotopes. Likewise, 16S ribosomal rRNA, dsrAB (dissimilatory sulfite reductase and mcrA (methyl coenzyme M reductase mRNA transcripts of sulfate-reducing bacteria (Desulfobacteraceae and Desulfobulbaceae and methane-cycling archaea (ANME-1 and ANME-2 were prevalent at the sediment surface under the mat and at its edge. Outside the mat at the surface, 16S rRNA sequences indicated mostly aerobes commonly found in seawater. The seep-related communities persisted at 12-20 cm depth inside and outside the mat. 16S rRNA transcripts and V6-tags reveal that bacterial and archaeal diversity underneath the mat are similar to each other, in contrast to oxic or microoxic habitats that have higher bacterial diversity. CONCLUSIONS/SIGNIFICANCE: The visual patchiness of microbial mats reflects sharp discontinuities in microbial community structure and activity over sub-meter spatial scales; these discontinuities have to be taken into account in geochemical and

  2. Phylogeny and distribution of nitrate-storing Beggiatoa spp. in coastal marine sediments

    DEFF Research Database (Denmark)

    Mussmann, M.; Schulz, HN; Strotmann, B.

    2003-01-01

    Filamentous sulphide-oxidizing Beggiatoa spp. often occur in large numbers in the coastal seabed without forming visible mats on the sediment surface. We studied the diversity, population structure and the nitrate-storing capability of such bacteria in the Danish Limfjorden and the German Wadden ....... Fluorescence in situ hybridization (FISH) of the natural Beggiatoa spp. populations showed that filament width is a conservative character of each phylogenetic species but a given filament width may represent multiple phylogenetic species in a mixed population....

  3. Motility patterns of filamentous sulfur bacteria, Beggiatoa spp

    DEFF Research Database (Denmark)

    Dunker, Rita; Røy, Hans; Kamp, Anja;

    2011-01-01

    was constructed based on our observations. The model was applied to virtual filaments in the oxygen- and sulfide-free zone of the sediment, which is a main habitat of Beggiatoa in the natural environment. The model predicts a long residence time of the virtual filament in the suboxic zone and explains why...... Beggiatoa accumulate high nitrate concentrations in internal vacuoles as an alternative electron acceptor to oxygen....

  4. Phylogenetic analysis of Beggiatoa spp. from organic rich sediment of Tokyo Bay, Japan.

    Science.gov (United States)

    Kojima, Hisaya; Fukui, Manabu

    2003-07-01

    Nitrate-accumulating filamentous bacteria from organic rich sediment of Tokyo Bay, morphologically similar to Beggiatoa species, were phylogenetically analyzed. From several sites in Tokyo Bay, Beggiatoa-like bacteria were collected. Each sample contained narrower or wider type (10 and 30 microns, respectively) of trichomes. With the nested PCR using specific primers for Beggiatoa, fragments of 16S rRNA gene were amplified and then subjected to denaturing gradient gel electrophoresis (DGGE) analysis. Sequencing and the following phylogenetic analysis indicated that they are related to large Beggiatoa species. The wider type was related to uncultured Beggiatoa clones of other geographical localities and distinct from the narrower type in Tokyo Bay. Among the narrower types, a sample from a tidal flat was genetically distinct from the sample from sites of 10 and 20 m water depth. These narrower types form a new branch in Beggiatoa/Thioploca cluster. The result of phylogenetic analysis was in accordance with the previous studies that indicate possession of nitrate-accumulation capability is congruent with phylogeny based on 16S rRNA sequences.

  5. Filamentous sulfur bacteria, Beggiatoa spp., in arctic marine sediments (Svalbard, 79°N)

    DEFF Research Database (Denmark)

    Jørgensen, Bo Barker; Dunker, Rita; Grünke, Stefanie;

    2010-01-01

    is closely associated with other large, marine, nitrate-storing Beggiatoa. The Beggiatoa mostly occurred in the upper 2-5 cm of oxidized surface sediment between oxygen and the deeper sulfidic zone. In spite of a very low or an undetectable sulfide concentration, sulfate reduction provided abundant H2S...

  6. Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp

    DEFF Research Database (Denmark)

    Nübel, Ulrich; Bateson, Mary M.; Madigan, Michael T.;

    2001-01-01

    primers for the specific amplification of 16S rRNA genes from filamentous phototrophic bacteria within the kingdom of "green nonsulfur bacteria." PCR products recovered from microbial mats in a saltern in Guerrero Negro, Mexico, were subjected to cloning or denaturing gradient gel electrophoresis...

  7. Comparative analysis of Beggiatoa from hypersaline and marine environments.

    Science.gov (United States)

    de Albuquerque, Julia Peixoto; Keim, Carolina Neumann; Lins, Ulysses

    2010-07-01

    The main criterion to classify a microorganism as belonging to the genus Beggiatoa is its morphology. All multicellular, colorless, gliding bacterial filaments containing sulfur globules described so far belong to this genus. At the ultrastructural level, they show also a very complex cell envelope structure. Here we describe uncultured vacuolated and non-vacuolated bacteria from two different environments showing all characteristics necessary to assign a bacterium to the genus Beggiatoa. We also intended to investigate whether narrow and vacuolate Beggiatoa do differ morphologically as much as they do phylogenetically. Both large, vacuolated trichomes and narrow filaments devoid of vacuoles were observed. We confirmed the identity of the narrow filaments by 16S rRNA phylogenetic analysis. The diameters of the trichomes ranged from 2.4 to 34 microm, and their lengths ranged from 10 microm to over 30 mm. Narrow trichomes moved by gliding at 3.0 microm/s; large filaments moved at 1.5 microm/s. Periplasmic sulfur inclusions were observed in both types of filaments, whereas phosphorus-rich bodies were found only in narrow trichomes. On the other hand, nitrate vacuoles were observed only in large trichomes. Ultra-thin section transmission electron microscopy showed differences between the cell ultrastructure of narrow (non-vacuolated) and large (vacuolated) Beggiatoa. We observed that cell envelopes from narrow Beggiatoa consist of five layers, whereas cell envelopes from large trichomes contain four layers.

  8. Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment

    DEFF Research Database (Denmark)

    Preisler, André; de Beer, Dirk; Lichtschlag, Anna;

    2007-01-01

    gradient and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa...... and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa...

  9. Mobile elements in a single-filament orange Guaymas Basin Beggiatoa ("Candidatus Maribeggiatoa") sp. draft genome: evidence for genetic exchange with cyanobacteria.

    Science.gov (United States)

    MacGregor, Barbara J; Biddle, Jennifer F; Teske, Andreas

    2013-07-01

    The draft genome sequence of a single orange Beggiatoa ("Candidatus Maribeggiatoa") filament collected from a microbial mat at a hydrothermal site in Guaymas Basin (Gulf of California, Mexico) shows evidence of extensive genetic exchange with cyanobacteria, in particular for sensory and signal transduction genes. A putative homing endonuclease gene and group I intron within the 23S rRNA gene; several group II catalytic introns; GyrB and DnaE inteins, also encoding homing endonucleases; multiple copies of sequences similar to the fdxN excision elements XisH and XisI (required for heterocyst differentiation in some cyanobacteria); and multiple sequences related to an open reading frame (ORF) (00024_0693) of unknown function all have close non-Beggiatoaceae matches with cyanobacterial sequences. Sequences similar to the uncharacterized ORF and Xis elements are found in other Beggiatoaceae genomes, a variety of cyanobacteria, and a few phylogenetically dispersed pleiomorphic or filamentous bacteria. We speculate that elements shared among filamentous bacterial species may have been exchanged in microbial mats and that some of them may be involved in cell differentiation.

  10. Growth and nitrate reduction of Beggiatoa filaments studied in enrichment cultures

    DEFF Research Database (Denmark)

    Kamp, Anja

    in oxygen-sulphide gradient tubes, and observed with a camera system. Growth mode, breakage, and movement directions of Beggiatoa filaments were documented via time-lapse video recording. The initial doubling time of cells was 15.7 ±1.3 h (mean ±SD; room temperature). Filaments grew up to an average length...... at the same point at which the tip of a forming loop of the filament had been observed before. As it is known that filament breakage is accomplished by the formation of a sacrificial cell, it was hypothesised that sacrificial cells interrupt the communication between two parts of one filament....... As a consequence, the two parts of one filament can move towards each other forming the tip of a loop at the sacrificial cell. The second part of this thesis focused on the physiology of Beggiatoa. The sulphur bacteria Beggiatoa can reach high biomass in many aquatic habitats, e.g. in and on freshwater and marine...

  11. Automated Image Analysis for the Detection of Benthic Crustaceans and Bacterial Mat Coverage Using the VENUS Undersea Cabled Network

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    Jacopo Aguzzi

    2011-11-01

    Full Text Available The development and deployment of sensors for undersea cabled observatories is presently biased toward the measurement of habitat variables, while sensor technologies for biological community characterization through species identification and individual counting are less common. The VENUS cabled multisensory network (Vancouver Island, Canada deploys seafloor camera systems at several sites. Our objective in this study was to implement new automated image analysis protocols for the recognition and counting of benthic decapods (i.e., the galatheid squat lobster, Munida quadrispina, as well as for the evaluation of changes in bacterial mat coverage (i.e., Beggiatoa spp., using a camera deployed in Saanich Inlet (103 m depth. For the counting of Munida we remotely acquired 100 digital photos at hourly intervals from 2 to 6 December 2009. In the case of bacterial mat coverage estimation, images were taken from 2 to 8 December 2009 at the same time frequency. The automated image analysis protocols for both study cases were created in MatLab 7.1. Automation for Munida counting incorporated the combination of both filtering and background correction (Median- and Top-Hat Filters with Euclidean Distances (ED on Red-Green-Blue (RGB channels. The Scale-Invariant Feature Transform (SIFT features and Fourier Descriptors (FD of tracked objects were then extracted. Animal classifications were carried out with the tools of morphometric multivariate statistic (i.e., Partial Least Square Discriminant Analysis; PLSDA on Mean RGB (RGBv value for each object and Fourier Descriptors (RGBv+FD matrices plus SIFT and ED. The SIFT approach returned the better results. Higher percentages of images were correctly classified and lower misclassification errors (an animal is present but not detected occurred. In contrast, RGBv+FD and ED resulted in a high incidence of records being generated for non-present animals. Bacterial mat coverage was estimated in terms of Percent

  12. Automated image analysis for the detection of benthic crustaceans and bacterial mat coverage using the VENUS undersea cabled network.

    Science.gov (United States)

    Aguzzi, Jacopo; Costa, Corrado; Robert, Katleen; Matabos, Marjolaine; Antonucci, Francesca; Juniper, S Kim; Menesatti, Paolo

    2011-01-01

    The development and deployment of sensors for undersea cabled observatories is presently biased toward the measurement of habitat variables, while sensor technologies for biological community characterization through species identification and individual counting are less common. The VENUS cabled multisensory network (Vancouver Island, Canada) deploys seafloor camera systems at several sites. Our objective in this study was to implement new automated image analysis protocols for the recognition and counting of benthic decapods (i.e., the galatheid squat lobster, Munida quadrispina), as well as for the evaluation of changes in bacterial mat coverage (i.e., Beggiatoa spp.), using a camera deployed in Saanich Inlet (103 m depth). For the counting of Munida we remotely acquired 100 digital photos at hourly intervals from 2 to 6 December 2009. In the case of bacterial mat coverage estimation, images were taken from 2 to 8 December 2009 at the same time frequency. The automated image analysis protocols for both study cases were created in MatLab 7.1. Automation for Munida counting incorporated the combination of both filtering and background correction (Median- and Top-Hat Filters) with Euclidean Distances (ED) on Red-Green-Blue (RGB) channels. The Scale-Invariant Feature Transform (SIFT) features and Fourier Descriptors (FD) of tracked objects were then extracted. Animal classifications were carried out with the tools of morphometric multivariate statistic (i.e., Partial Least Square Discriminant Analysis; PLSDA) on Mean RGB (RGBv) value for each object and Fourier Descriptors (RGBv+FD) matrices plus SIFT and ED. The SIFT approach returned the better results. Higher percentages of images were correctly classified and lower misclassification errors (an animal is present but not detected) occurred. In contrast, RGBv+FD and ED resulted in a high incidence of records being generated for non-present animals. Bacterial mat coverage was estimated in terms of Percent Coverage

  13. Talking Mats

    DEFF Research Database (Denmark)

    2012-01-01

    Talking Mats are visualizations in the handy size of a set of cards used to support interviews with people with mental disabilities.......Talking Mats are visualizations in the handy size of a set of cards used to support interviews with people with mental disabilities....

  14. Cyanobacterial mats and stromatolites

    NARCIS (Netherlands)

    Stal, L.J.; Whitton, Brian A.

    2012-01-01

    Cyanobacteria are often the key organisms comprising microbial mats. They form dense micrometer-scale communities in which the full plethora of microbial metabolism can be present. Such mats are therefore excellent model systems and because of their analogy with Precambrian stromatolites they are al

  15. MAT FOR LEPTOSPIROSIS DIAGNOSIS

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    Esti Rahardianingtyas.

    2014-06-01

    Full Text Available Leptospirosis is a disease caused by bacterial infection leptospira interrogans.Leptospira bacteria is a spiral bacterium with solid strands with two flagella periplasmik.Septicaemic phase patient samples taken from the blood and cerebrospinal fluid, whereassamples taken at phase immune extracted from urine. The diagnosis of leptospirosis occurdirectly or indirectly. Diagnosis is done by directly isolate and identify the causative agents ofthe agent. Diagnosis is done indirectly by detecting specific antibodies from the patient's body.Gold Standard of the diagnosis of leptospirosis is MAT. Mat made by reacting antibodies toleptospira antigen. Positive results seen with clump formed.Key words: Leptospirosis, Leptospirosis Diagnostic, MAT (Microscopic Agglutination Test Leptospirosis merupakan penyakit yang disebabkan karena infeksi bakteri leptospirainterrogans. Bakteri leptospira merupakan bakteri spiral dengan untaian yang padat dengan duaflagella periplasmik. Sampel pasien pada fase septicaemic diambil dari darah dan cairanserebrospinal, sedangkan sampel yang diambil pada fase immune diambil dari urine. Diagnosisleptospirosis dilakukan secara langsung maupun tidak langsung. Diagnosis secara langsungdilakukan dengan cara mengisolasi agen penyebab dan mengidentifikasi agen tersebut. Diagnosissecara tidak langsung dilakukan dengan cara mendeteksi antibodi spesiflk dari dalam tubuhpasien. Gold Standart dari diagnosis leptospirosis adalah MAT. Mat dilakukan dengan caramereaksikan antibodi dengan antigen leptospira. Hasil positif dilihat dengan terbentuk gumpalanagglutinasiKata kunci: Leptospirosis, Leptospira, Leptospirosis Diagnosis.

  16. MAT 126 ASH Course Tutorial / Tutorialoutlet

    OpenAIRE

    stylia

    2015-01-01

    For more course tutorials visit www.tutorialoutlet.com   MAT 126 Week 1 DQ 1 (Ash) MAT 126 Week 1 Quiz (Ash) MAT 126 Week 1 Written Assignment (Arithmetic and geometric sequence) (Ash) MAT 126 Week 2 DQ 1 (Ash) MAT 126 Week 2 DQ 2 (Ash) MAT 126 Week 2 Assignment Is It Fat Free (Ash) MAT 126 Week 2 Quiz (Ash) MAT 126 Week 3 DQ 1 (Ash) MAT 126 Week 3 DQ 2 (Ash) MAT 126 Week 3 Assignment Quadratic Equations (Ash) MAT 126 Week 3 Quiz (Ash) MAT 126...

  17. Diazotrophic microbial mats

    NARCIS (Netherlands)

    Severin, I.; Stal, L.J.; Seckbach, J.; Oren, A.

    2010-01-01

    Microbial mats have been the focus of scientific research for a few decades. These small-scale ecosystems are examples of versatile benthic communities of microorganisms, usually dominated by phototrophic bacteria (e.g., Krumbein et al., 1977; Jørgensen et al., 1983). They develop as vertically stra

  18. Juhtlaused / Mats Nõges

    Index Scriptorium Estoniae

    Nõges, Mats, 1879-1973

    2011-01-01

    19. sajandi ja 20. sajandi alguse demograafilisi seisukohti väljendavad teesid Tartu ülikooli arstiteaduskonnale arstiteaduse doktori astme omandamiseks esitatud väitekirjast: Mats Nõges. Rahwamuutused Wiljandi Maakonnas 1801.- 1923. a. = Bevölkerungsbewegung im Kreise Fellin in Jahren 1801-1923. Demograafiline töö. Tartu, 1925

  19. On Matlis dualizing modules

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    Edgar E. Enochs

    2002-01-01

    Full Text Available We consider rings admitting a Matlis dualizing module E. We argue that if R admits two such dualizing modules, then a module is reflexive with respect to one if and only if it is reflexive with respect to the other. Using this fact we argue that the number (whether finite or infinite of distinct dualizing modules equals the number of distinct invertible (R,R-bimodules. We show by example that this number can be greater than one.

  20. Distribution and Composition of Thiotrophic Mats in the Hypoxic Zone of the Black Sea (150–170 m Water Depth, Crimea Margin)

    Science.gov (United States)

    Jessen, Gerdhard L.; Lichtschlag, Anna; Struck, Ulrich; Boetius, Antje

    2016-01-01

    At the Black Sea chemocline, oxygen- and sulfide-rich waters meet and form a niche for thiotrophic pelagic bacteria. Here we investigated an area of the Northwestern Black Sea off Crimea close to the shelf break, where the chemocline reaches the seafloor at around 150–170 m water depth, to assess whether thiotrophic bacteria are favored in this zone. Seafloor video transects were carried out with the submersible JAGO covering 20 km2 on the region between 110 and 200 m depth. Around the chemocline we observed irregular seafloor depressions, covered with whitish mats of large filamentous bacteria. These comprised 25–55% of the seafloor, forming a belt of 3 km width around the chemocline. Cores from the mats obtained with JAGO showed higher accumulations of organic matter under the mats compared to mat-free sediments. The mat-forming bacteria were related to Beggiatoa-like large filamentous sulfur bacteria based on 16S rRNA sequences from the mat, and visual characteristics. The microbial community under the mats was significantly different from the surrounding sediments and enriched with taxa affiliated with polymer degrading, fermenting and sulfate reducing microorganisms. Under the mats, higher organic matter accumulation, as well as higher remineralization and radiotracer-based sulfate reduction rates were measured compared to outside the mat. Mat-covered and mat-free sediments showed similar degradability of the bulk organic matter pool, suggesting that the higher sulfide fluxes and subsequent development of the thiotrophic mats in the patches are consequences of the accumulation of organic matter rather than its qualitative composition. Our observations suggest that the key factors for the distribution of thiotrophic mat-forming communities near to the Crimean shelf break are hypoxic conditions that (i) repress grazers, (ii) enhance the accumulation and degradation of labile organic matter by sulfate-reducers, and (iii) favor thiotrophic filamentous bacteria

  1. Distribution and Composition of Thiotrophic Mats in the Hypoxic Zone of the Black Sea (150-170 m Water Depth, Crimea Margin).

    Science.gov (United States)

    Jessen, Gerdhard L; Lichtschlag, Anna; Struck, Ulrich; Boetius, Antje

    2016-01-01

    At the Black Sea chemocline, oxygen- and sulfide-rich waters meet and form a niche for thiotrophic pelagic bacteria. Here we investigated an area of the Northwestern Black Sea off Crimea close to the shelf break, where the chemocline reaches the seafloor at around 150-170 m water depth, to assess whether thiotrophic bacteria are favored in this zone. Seafloor video transects were carried out with the submersible JAGO covering 20 km(2) on the region between 110 and 200 m depth. Around the chemocline we observed irregular seafloor depressions, covered with whitish mats of large filamentous bacteria. These comprised 25-55% of the seafloor, forming a belt of 3 km width around the chemocline. Cores from the mats obtained with JAGO showed higher accumulations of organic matter under the mats compared to mat-free sediments. The mat-forming bacteria were related to Beggiatoa-like large filamentous sulfur bacteria based on 16S rRNA sequences from the mat, and visual characteristics. The microbial community under the mats was significantly different from the surrounding sediments and enriched with taxa affiliated with polymer degrading, fermenting and sulfate reducing microorganisms. Under the mats, higher organic matter accumulation, as well as higher remineralization and radiotracer-based sulfate reduction rates were measured compared to outside the mat. Mat-covered and mat-free sediments showed similar degradability of the bulk organic matter pool, suggesting that the higher sulfide fluxes and subsequent development of the thiotrophic mats in the patches are consequences of the accumulation of organic matter rather than its qualitative composition. Our observations suggest that the key factors for the distribution of thiotrophic mat-forming communities near to the Crimean shelf break are hypoxic conditions that (i) repress grazers, (ii) enhance the accumulation and degradation of labile organic matter by sulfate-reducers, and (iii) favor thiotrophic filamentous bacteria

  2. Modeling benthic-pelagic nutrient exchange processes and porewater distributions in a seasonally-hypoxic sediment: evidence for massive phosphate release by Beggiatoa?

    Directory of Open Access Journals (Sweden)

    K. Wallmann

    2012-08-01

    Full Text Available This study presents benthic data from 12 samplings from February to December 2010 in a 2 m deep channel in the southwest Baltic Sea. In winter, the distribution of solutes in the porewater was strongly modulated by bioirrigation which efficiently flushed the upper 1 cm of sediment, leading to concentrations which varied little from bottom water values. Solute pumping by bioirrigation fell sharply in summer as the bottom waters became severely hypoxic (2. At this point the giant sulfide-oxidizing bacteria Beggiatoa was visible on surface sediments. Despite an increase in O2following mixing of the water column in November, macrofauna remained absent until the end of the sampling. Contrary to expectations, metabolites such as dissolved inorganic carbon, ammonium and hydrogen sulfide did not accumulate in the porewater during the hypoxic period when bioirrigation was absent, but instead tended toward bottom water values. This was taken as evidence for episodic bubbling of methane gas out of the sediment acting as an abiogenic irrigation process. Escaping bubble may provide a pathway for enhanced nutrient release to the bottom water and exacerbate the feedbacks with hypoxia. Subsurface dissolved phosphate (TPO4 peaks in excess of 400 μM developed in autumn resulting in a very large diffusive TPO4 flux to the water column of 0.7 ± 0.2 mmol m−2 d−1. The model was not able to simulate this TPO4 source as release of iron-bound P (Fe–P or organic P. As an alternative hypothesis, the TPO4 peak was reproduced using new kinetic expressions that allow Beggiatoa to take up porewater TPO4 and accumulate an intracellular P pool during periods with oxic bottom waters. TPO4 is then released during hypoxia, as previous published results with sulfide-oxidizing bacteria indicate. The TPO4 added to the porewater over the year by organic P and Fe–P is recycled though Beggiatoa, meaning that no additional source of TPO4 is needed to explain the TPO4 peak

  3. Auspicious tatami mat arrangements

    CERN Document Server

    Erickson, Alejandro; Schurch, Mark; Woodcock, Jennifer

    2011-01-01

    An \\emph{auspicious tatami mat arrangement} is a tiling of a rectilinear region with two types of tiles, $1 \\times 2$ tiles (dimers) and $1 \\times 1$ tiles (monomers). The tiles must cover the region and satisfy the constraint that no four corners of the tiles meet; such tilings are called \\emph{tatami tilings}. The main focus of this paper is when the rectilinear region is a rectangle. We provide a structural characterization of rectangular tatami tilings and use it to prove that the tiling is completely determined by the tiles that are on its border. We prove that the number of tatami tilings of an $n \\times n$ square with $n$ monomers is $n2^{n-1}$. We also show that, for fixed-height, the generating function for the number of tatami tilings of a rectangle is a rational function, and outline an algorithm that produces the generating function.

  4. Molecular ecology of microbial mats

    NARCIS (Netherlands)

    H. Bolhuis; M.S. Cretoiu; L.J. Stal

    2014-01-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep

  5. Microsensor Measurements of Hydrogen Gas Dynamics in Cyanobacterial Microbial Mats

    Directory of Open Access Journals (Sweden)

    Michael eNielsen

    2015-07-01

    Full Text Available We used a novel amperometric microsensor for measuring hydrogen gas production and consumption at high spatio-temporal resolution in cyanobacterial biofilms and mats dominated by non-heterocystous filamentous cyanobacteria (Microcoleus chtonoplastes and Oscillatoria spp.. The new microsensor is based on the use of an organic electrolyte and a stable internal reference system and can be equipped with a chemical sulfide trap in the measuring tip; it exhibits very stable and sulfide-insensitive measuring signals and a high sensitivity (1.5-5 pA per µmol L-1 H2. Hydrogen gas measurements were done in combination with microsensor measurements of scalar irradiance, O2, pH, and H2S and showed a pronounced H2 accumulation (of up to 8-10% H2 saturation within the upper mm of cyanobacterial mats after onset of darkness and O2 depletion. The peak concentration of H2 increased with the irradiance level prior to darkening. After an initial build-up over the first 1-2 hours in darkness, H2 was depleted over several hours due to efflux to the overlaying water, and due to biogeochemical processes in the uppermost oxic layers and the anoxic layers of the mats. Depletion could be prevented by addition of molybdate pointing to sulfate reduction as a major sink for H2. Immediately after onset of illumination, a short burst of presumably photo-produced H2 due to direct photobiolysis was observed in the illuminated but anoxic mat layers. As soon as O2 from photosynthesis started to accumulate, the H2 was consumed rapidly and production ceased. Our data give detailed insights into the microscale distribution and dynamics of H2 in cyanobacterial biofilms and mats, and further support that cyanobacterial H2 production can play a significant role in fueling anaerobic processes like e.g. sulfate reduction or anoxygenic photosynthesis in microbial mats.

  6. MICROBIAL MATS - A JOINT VENTURE

    NARCIS (Netherlands)

    VANGEMERDEN, H

    1993-01-01

    Microbial mats characteristically are dominated by a few functional groups of microbes: cyanobacteria, colorless sulfur bacteria, purple sulfur bacteria, and sulfate-reducing bacteria. Their combined metabolic activities result in steep environmental microgradients, particularly of oxygen and sulfid

  7. Community structure of filamentous, sheath-building sulfur bacteria, Thioploca spp, off the coast of Chile

    DEFF Research Database (Denmark)

    Schulz, HN; Jørgensen, BB; Fossing, HA

    1996-01-01

    The filamentous sulfur bacteria Thioploca spp, produce dense bacterial mats in the shelf area off the coast of Chile and Peru. The mat consists of common sheaths, shared by many filaments, that reach 5 to 10 cm dean into the sediment, The structure of the Thioploca communities off the Bay...

  8. Molecular ecology of microbial mats.

    Science.gov (United States)

    Bolhuis, Henk; Cretoiu, Mariana Silvia; Stal, Lucas J

    2014-11-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep and fluctuating physicochemical microgradients, that are the result of the ever changing environmental conditions and of the microorganisms' own activities, give rise to a plethora of potential niches resulting in the formation of one of the most diverse microbial ecosystems known to date. For several decades, microbial mats have been studied extensively and more recently molecular biological techniques have been introduced that allowed assessing and investigating the diversity and functioning of these systems. These investigations also involved metagenomics analyses using high-throughput DNA and RNA sequencing. Here, we summarize some of the latest developments in metagenomic analysis of three representative phototrophic microbial mat types (coastal, hot spring, and hypersaline). We also present a comparison of the available metagenomic data sets from mats emphasizing the major differences between them as well as elucidating the overlap in overall community composition.

  9. Sparse Coding for Alpha Matting.

    Science.gov (United States)

    Johnson, Jubin; Varnousfaderani, Ehsan; Cholakkal, Hisham; Rajan, Deepu

    2016-04-21

    Existing color sampling based alpha matting methods use the compositing equation to estimate alpha at a pixel from pairs of foreground (F) and background (B) samples. The quality of the matte depends on the selected (F,B) pairs. In this paper, the matting problem is reinterpreted as a sparse coding of pixel features, wherein the sum of the codes gives the estimate of the alpha matte from a set of unpaired F and B samples. A non-parametric probabilistic segmentation provides a certainty measure on the pixel belonging to foreground or background, based on which a dictionary is formed for use in sparse coding. By removing the restriction to conform to (F,B) pairs, this method allows for better alpha estimation from multiple F and B samples. The same framework is extended to videos, where the requirement of temporal coherence is handled effectively. Here, the dictionary is formed by samples from multiple frames. A multi-frame graph model, as opposed to a single image as for image matting, is proposed that can be solved efficiently in closed form. Quantitative and qualitative evaluations on a benchmark dataset are provided to show that the proposed method outperforms current state-of-the-art in image and video matting.

  10. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    Energy Technology Data Exchange (ETDEWEB)

    Beam, Jake; Bernstein, Hans C.; Jay, Z.; Kozubal, Mark; Jennings, Ryan; Tringe, Susannah G.; Inskeep, William P.

    2016-02-15

    Iron oxide microbial mats are ubiquitous geobiological features on Earth and occur in extant acidic hot springs of Yellowstone National Park (YNP), WY, USA, and form as a result of microbial processes. The relative contribution of different organisms to the development of these mat ecosystems is of specific interest. We hypothesized that chemolithoautotrophic organisms contribute to the early development and production of Fe(III)-oxide mats, which could support later-colonizing heterotrophic microorganisms. Sterile glass slides were incubated in the outflow channels of two acidic geothermal springs in YNP, and spatiotemporal changes in Fe(III)-oxide accretion and abundance of relevant community members were measured. Lithoautotrophic Hydrogenobaculum spp. were first colonizers and the most abundant taxa identified during early successional stages (7 – 40 days). Populations of M. yellowstonensis colonized after ~ 7 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized after 30 days, and emerge as the dominant functional guild in mature iron oxide mats (1 – 2 cm thick) that form after 70 – 120 days. First-order rate constants of iron oxide accretion ranged from 0.05 – 0.046 day-1, and reflected the absolute amount of iron accreted. Micro- and macroscale microterracettes were identified during iron oxide mat development, and suggest that the mass transfer of oxygen limits microbial growth. This was also demonstrated using microelectrode measurements of oxygen as a function of mat depth, which showed steep gradients in oxygen from the aqueous mat interface to ~ 1 mm. The formation and succession of amorphous Fe(III)-oxide mat communities follows a predictable pattern of distinct stages and growth. The successional stages and microbial signatures observed in these extant Fe(III)-oxide mat communities may be relevant to other past or present Fe(III)-oxide mineralizing systems.

  11. Permeability of Electrospun Superhydrophobic Nanofiber Mats

    Directory of Open Access Journals (Sweden)

    Sarfaraz U. Patel

    2012-01-01

    Full Text Available This paper discusses the fabrication and characterization of electrospun nanofiber mats made up of poly(4-methyl-1-pentene polymer. The polymer was electrospun in different weight concentrations. The mats were characterized by their basis weight, fiber diameter distribution, contact angles, contact angle hysteresis, and air permeability. All of the electrospun nonwoven fiber mats had water contact angles greater than 150 degrees making them superhydrophobic. The permeabilities of the mats were empirically fitted to the mat basis weight by a linear relation. The experimentally measured air permeabilities were significantly larger than the permeabilities predicted by the Kuwabara model for fibrous media.

  12. Arcobacter spp.

    OpenAIRE

    Filipović, Ivana; Zdolec, Nevijo; Benussi Skukan, Andrea

    2007-01-01

    Bakterije roda Arcobacter pripadaju porodici Campylobacteriaceae, no od Campylobacter vrsta razlikuje se po sposobnosti rasta na 15 °C i u aerobnim uvjetima. Ove bakterije izolirane su iz oboljelih životinja, ljudi, ali i s trupova životinja nakon klaoničke obrade, te svježeg mesa, kao i vode. Farmske životinje, posebice perad, smatraju se rezervoarima bakterije. Razvijene su različite mikrobiološke metode za izolaciju Arcobacter spp., ali standardni protokol još uvijek ne postoji. Za brzu i ...

  13. The ichthyofauna of drifting macrophyte mats in the Ivinhema River, upper Paraná River basin, Brazil

    Science.gov (United States)

    Bulla, C. K.; Gomes, Luiz Carlos; Miranda, Leandro E.; Agostinho, A. A.

    2011-01-01

    We describe the fish assemblages associated with drifting macrophyte mats and consider their possible role as dispersal vectors in the Ivinhema River, a major tributary of the upper Paraná River, Brazil. Fish associated with drifting mats were sampled in the main river channel during January and March 2005, when the wind and/or the increased water level were sufficient to transport macrophyte stands. Fish in the drifting mats were sampled with a floating sieve (4 m long x 2 m wide x 0.6 m high, and 2 mm mesh size). In the laboratory, larvae, juvenile, and adult fish were counted and identified to the lowest possible taxonomic level. In four drifting macrophyte mats we captured 218 individuals belonging to at least 28 species, 17 families, and 6 orders. Aphyocharax dentatus, Serrasalmus spp., and Trachelyopterus galeatus were the most abundant taxa associated with the mats, but species richness ranged from 6 to 24 species per mat. In addition, 85% of the total number of individuals caught was larvae and juveniles. Although preliminary and based on limited samples, this study of drifting macrophyte mats was the first one in the last unregulated stretch of the Paraná River remaining inside Brazilian territory, and alerts us to the potential role of macrophytes mats as dispersers of fish species in the region.

  14. Analysis of lipophilic pigments from a phototrophic microbial mat community by high performance liquid chromatography

    Science.gov (United States)

    Palmisano, A. C.; Cronin, S. E.; Des Marais, D. J.

    1988-01-01

    As assay for lipophilic pigments in phototrophic microbial mat communities using reverse phase-high performance liquid chromatography was developed which allows the separation of 15 carotenoids and chloropigments in a single 30 min program. Lipophilic pigments in a laminated mat from a commercial salina near Laguna Guerrero Negro, Baja California Sur, Mexico reflected their source organisms. Myxoxanthophyll, echinenone, canthaxanthin, and zeaxanthin were derived from cyanobacteria; chlorophyll c, and fucoxanthin from diatoms; chlorophyll a from cyanobacteria and diatoms; bacteriochlorophylls a and c, bacteriophaeophytin a, and gamma-carotene from Chloroflexus spp.; and beta-carotene from a variety of phototrophs. Sensitivity of detection was 0.6-6.1 ng for carotenoids and 1.7-12 ng for most chloropigments. This assay represents a significant improvement over previous analyses of lipophilic pigments in microbial mats and promises to have a wider application to other types of phototrophic communities.

  15. Is the microagglutination test (MAT) good for predicting the infecting serogroup for leptospirosis in Brazil?

    Science.gov (United States)

    Blanco, Roberta Morozetti; dos Santos, Luis Fernando; Galloway, Renee Lynn; Romero, Eliete Caló

    2016-02-01

    Leptospirosis is a zoonotic infection caused by pathogenic members of the genus Leptospira spp. Knowledge of the prevalent serovars and their maintenance hosts is essential to understand the disease. The aim of this study was to evaluate the ability of serology by the microscopic agglutination test (MAT) to predict the serogroups compared with results of identification of leptospires in São Paulo, Brazil. MAT correctly assigned the serogroup of the infecting isolate in 49/52 cases (94.23%). The serogroup Icterohaemorrhagiae was the predominant serogroup (88.46%). This study showed the usefulness of the MAT to correctly identify the infecting serogroup with a good overall agreement between the serologically-identified infecting serogroup and by identification of the isolate and can be used in epidemiological surveys in São Paulo. However, it should be complemented by the identification of Leptospira isolates.

  16. Bentonite mat demonstration. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Serrato, M.G.

    1994-12-30

    The Bentonite Mat Demonstration was developed to provide the Environmental Restoration Department with field performance characteristics and engineering data for an alternative closure cover system configuration. The demonstration was initiated in response to regulatory concerns regarding the use of an alternative cover system for future design configurations. These design considerations are in lieu of the US Environmental Protection Agency (EPA) Recommended Design for Closure Cover Systems and specifically a single compacted kaolin clay layer with a hydraulic conductivity of 1 {times} 10{sup {minus}7} cm/sec. This alternative configuration is a composite geosynthetic material hydraulic barrier consisting from bottom to top: 2 ft compacted sandy clay layer (typical local Savannah River Site soil type) that is covered by a bentonite mat--geosynthetic clay liner (GCL) and is overlaid by a 40 mil High Density Polyethylene (HDPE) geomembrane--flexible membrane liner. This effort was undertaken to obtain and document the necessary field performance/engineering data for future designs and meet regulatory technical requirements for an alternative cover system configuration. The composite geosynthetic materials hydraulic barrier is the recommended alternative cover system configuration for containment of hazardous and low level radiological waste layers that have a high potential of subsidence to be used at the Savannah River Site (SRS). This alternative configuration mitigates subsidence effects in providing a flexible, lightweight cover system to maintain the integrity of the closure. The composite geosynthetic materials hydraulic barrier is recommended for the Sanitary Landfill and Low Level Radiological Waste Disposal Facility (LLRWDF) Closures.

  17. MatLab Script and Functional Programming

    Science.gov (United States)

    Shaykhian, Gholam Ali

    2007-01-01

    MatLab Script and Functional Programming: MatLab is one of the most widely used very high level programming languages for scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. The MatLab seminar covers the functional and script programming aspect of MatLab language. Specific expectations are: a) Recognize MatLab commands, script and function. b) Create, and run a MatLab function. c) Read, recognize, and describe MatLab syntax. d) Recognize decisions, loops and matrix operators. e) Evaluate scope among multiple files, and multiple functions within a file. f) Declare, define and use scalar variables, vectors and matrices.

  18. Effects of mat characteristics on plantar pressure patterns and perceived mat properties during landing in gymnastics.

    Science.gov (United States)

    Pérez-Soriano, Pedro; Llana-Belloch, Salvador; Morey-Klapsing, Gaspar; Perez-Turpin, Jose Antonio; Cortell-Tormo, Juan Manuel; van den Tillaar, Roland

    2010-11-01

    Shock absorption and stability during landings is provided by both, gymnast ability and mat properties. The aims of this study were to determine the influence of different mat constructions on their energy absorption and stability capabilities, and to analyse how these properties affect gymnast's plantar pressures as well as subjective mat perception during landing. Six mats were tested using a standard mechanical drop test. In addition, plantar pressures and subjective perception during landing were obtained from 15 expert gymnasts. The different mats influenced plantar pressures and gymnasts' subjective perception during landing of gymnasts. Significant correlations between plantar pressures at the medial metatarsal and lateral metatarsal zones of the gymnasts' feet with the different shock absorption characteristics of the mats were found. However, subjective perception tests were not able to discriminate mat functionality between the six mats as no significant correlations between the mechanical mat properties with the subjective perception of these properties were found. This study demonstrated that plantar pressures are a useful tool for discriminating different landing mats. Using similar approaches, ideally including kinematics as well, could help us in our understanding about the influences of different mats upon gymnast-mat interaction.

  19. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    Directory of Open Access Journals (Sweden)

    Jacob P. Beam

    2016-02-01

    Full Text Available Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA, and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III-oxide mat ecosystems. Spatial and temporal changes in Fe(III-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3 - 3.5; temperature = 68 - 75 °C in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4 - 40 d, and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 d, and reached steady-state levels within 14 - 30 d, corresponding to visible Fe(III-oxide accretion. Heterotrophic archaea colonized near 30 d, and emerged as the dominant functional guild after 70 d and in mature Fe(III-oxide mats (1 - 2 cm thick. First-order rate constants of Fe(III-oxide accretion ranged from 0.046 - 0.05 d-1, and in situ microelectrode measurements showed that the oxidation of Fe(II is limited by the diffusion of O2 into the Fe(III-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III-oxide mats are useful for understanding other Fe(II-oxidizing systems.

  20. Flat laminated microbial mat communities

    Science.gov (United States)

    Franks, Jonathan; Stolz, John F.

    2009-10-01

    Flat laminated microbial mats are complex microbial ecosystems that inhabit a wide range of environments (e.g., caves, iron springs, thermal springs and pools, salt marshes, hypersaline ponds and lagoons, methane and petroleum seeps, sea mounts, deep sea vents, arctic dry valleys). Their community structure is defined by physical (e.g., light quantity and quality, temperature, density and pressure) and chemical (e.g., oxygen, oxidation/reduction potential, salinity, pH, available electron acceptors and donors, chemical species) parameters as well as species interactions. The main primary producers may be photoautotrophs (e.g., cyanobacteria, purple phototrophs, green phototrophs) or chemolithoautophs (e.g., colorless sulfur oxidizing bacteria). Anaerobic phototrophy may predominate in organic rich environments that support high rates of respiration. These communities are dynamic systems exhibiting both spatial and temporal heterogeneity. They are characterized by steep gradients with microenvironments on the submillimeter scale. Diel oscillations in the physical-chemical profile (e.g., oxygen, hydrogen sulfide, pH) and species distribution are typical for phototroph-dominated communities. Flat laminated microbial mats are often sites of robust biogeochemical cycling. In addition to well-established modes of metabolism for phototrophy (oxygenic and non-oxygenic), respiration (both aerobic and anaerobic), and fermentation, novel energetic pathways have been discovered (e.g., nitrate reduction couple to the oxidation of ammonia, sulfur, or arsenite). The application of culture-independent techniques (e.g., 16S rRNA clonal libraries, metagenomics), continue to expand our understanding of species composition and metabolic functions of these complex ecosystems.

  1. The MAT1-1:MAT1-2 ratio of Sporothrix globosa isolates in Japan.

    Science.gov (United States)

    Kano, Rui; Tsui, Clement K-M; Hamelin, Richard C; Anzawa, Kazushi; Mochizuki, Takashi; Nishimoto, Katsutaro; Hiruma, Masataro; Kamata, Hiroshi; Hasegawa, Atsuhiko

    2015-02-01

    In order to understand the reproductive biology of pathogenic species in the Sporothrix schenckii complex, we characterized the partial mating type (MAT1-1) loci of Sporothrix schenckii, as well as the S. globosa MAT1-1-1 gene, which encoded 262 amino acid sequences. The data confirmed that the MAT1-1 locus of S. globosa was divergent from the MAT1-2 locus of the opposite mating type, suggesting that the fungus is heterothallic. To determine the mating type ratio of 20 isolates from Japanese patients, we analyzed the MAT loci by specific PCR amplification of MAT1-1-1 and MAT1-2-1 genes. The MAT1-1-1 was detected in 5 isolates but not in the other 15 isolates with the presence of MAT1-2-1. The MAT1-1:1-2 ratio of S. globosa isolates in Japan was estimated to be 1:3. Phylogenetic analysis indicated that the sequences of the MAT1-1-1 were identical among S. globosa isolates but different from S. schenckii and Ophiostoma montium.

  2. Microstructuring of electrospun mats employing femtosecond laser

    Directory of Open Access Journals (Sweden)

    Erika Adomavičiūtė

    2015-03-01

    Full Text Available Electrospun mats from nano/micro-fibers with control porosity and pore shape may be ideal candidate for tissue engineering scaffolds. In this study three type of poly(vinyl alcohol (PVA mats of 48-65 µm thickness with different nano/micro-fibers diameters mostly of 100-200 nm were deposited by electrospinning process. Controlled density porosity in the electrospun mats was introduced by Yb:KGW femtosecond laser micromachining system. The influence of electrospun mat micro structure, the distance between the adjacent laser ablation points, the number of femtosecond laser pulses on quality and structure of laser irradiated holes were investigated. It was demonstrated that the quality of irradiated holes depend on structure of electrospun mats (diameter of nano/micro-fibers, thickness of mats and femtosecond laser processing parameters. Varying the distance between points and number of applied femtosecond laser pulses it is possible to fabricate electrospun mats with pores of 22-36 μm diameter.DOI: http://dx.doi.org/10.5755/j01.ms.21.1.10249

  3. Composição químico-bromatológica e degradabilidade In Situ da matéria seca, proteína bruta e fibra em detergente neutro da casca do fruto de três variedades de maracujá (Passiflora spp Chemical composition and In situ degradability of dry matter, crude protein and neutral detergent fiber of three varieties passion fruit (Passiflora spp shelves

    Directory of Open Access Journals (Sweden)

    Cláudio Villela Vieira

    1999-01-01

    Full Text Available O objetivo deste trabalho foi avaliar a composição químico-bromatológica e as degradabilidades potenciais e efetivas da matéria seca (MS, proteína bruta (PB e fibra em detergente neutro (FDN do resíduo (casca das variedades de maracujá amarela (Passiflora edulis f. Flavicarpa Degener, roxa (Passiflora edulis Sims e doce (Passiflora alata e da mistura das variedades amarela e roxa. Calcularam-se, também, o consumo de MS e as concentrações de amônia, ácidos graxos voláteis e pH no líquido ruminal e a taxa de passagem das fases líquida e sólida da digesta no rúmen de bovinos. Os resíduos (casca in natura apresentaram grande quantidade de água, enquanto a variedade roxa apresentou o maior teor de matéria seca (17,01% e o amarelo, o menor (10,78%. O teor de proteína bruta variou de 9,82% na MS, para a variedade amarela, a 7,53%, para a doce. O teor de fósforo foi 0,13% na MS para a variedade doce, chegando a 0,09, para a roxo, e 0,08%, para a amarelo. Os teores de cálcio, FDN e FDA não diferiram entre as variedades. Às 48 horas de incubação no rúmen, a degradabilidade atingiu ponto máximo para o teor de MS, PB e FDN. Houve interação de tempo e variedade na degradabilidade de MS, PB e FDN. As degradabilidades de PB e FDN foram influenciadas pelas variedades. A DE da FDN foi maior para a mistura (45,85% e menor para a doce (34,61%. O consumo médio de MS foi de 16,90 kg/animal, equivalente a 3,27% do peso vivo ou 156,11 g/kg0,75, quando se utilizou farelo de casca (resíduo com 90% de MS. As concentrações de ácidos graxos voláteis mantiveram-se na faixa de 7,76 a 10,87 mmoles/100 mL. O pH do líquido ruminal variou de 6,03 a 6,75 e o N-amoniacal, de 4,93 a 9,86 mg/100 mL.Chemical composition and the potential and effective degradabilities of dry matter (DM, crude protein (CP and neutral detergent fiber (NDF of passion fruit residue (shelves were studied in the varieties yellow (Passiflora edulis f. Flavicarpa Degener

  4. Efeitos de diferentes níveis de matéria orgânica no solo e de inóculo sobre a interação planta-Meloidogyne spp. e a produção massal de Pasteuria penetrans Effects of cow manure levels in the soil and inoculum concentration on the plant-Meloidogyne spp. interaction and on the mass production of Pasteuria penetrans

    Directory of Open Access Journals (Sweden)

    Fábio Ramos Alves

    2007-12-01

    Full Text Available Foram estudados os efeitos de quatro proporções de esterco de curral no solo, 0, 20, 33 e 50% (V:V, e três níveis de inóculo de Meloidogyne spp. (3.000, 6.000 e 9.000 J2 por planta na concentração de fenóis em raízes de tomateiro, no desenvolvimento das fêmeas, nas células gigantes induzidas por esses patógenos e na infecção e reprodução de Pasteuria penetrans. O experimento foi conduzido em casa-de-vegetação, em delineamento inteiramente ao acaso com doze repetições, sendo avaliado 50 dias após a inoculação das plantas. O tamanho médio das fêmeas do nematóide foi maior quando as plantas foram inoculadas com 3.000 J2. Maior percentual de fêmeas infectadas por P. penetrans foi observado quando não se utilizou esterco no substrato ou quando as plantas foram inoculadas com 3.000 J2. As plantas inoculadas com 9.000 J2 e cultivadas no substrato com 20% de esterco foram as que produziram mais endósporos. A concentração de fenóis nas raízes aumentou à medida que se acrescentou esterco de curral ao substrato. As células gigantes de plantas cultivadas no substrato com 33 e 50% de esterco apresentaram menores número, tamanho e quantidade de núcleos. O aumento da proporção de esterco de curral ao substrato causou aumento nas concentrações de fenóis nas raízes, fato que foi deletério às células gigantes, prejudicial ao desenvolvimento do nematóide e à reprodução de P. penetrans.The effects of four different proportions of cow manure, 0, 20, 33 and 50% (V:V and three Meloidogyne spp. inoculum levels (3,000; 6,000 and 9,000 J2 per plant on the phenol concentration in the tomato roots, in the nematode female development, the giant cells induced by the nematode and on the reproduction of Pasteuria penetrans were investigated. The experiment was carried out in greenhouse, in a completely randomized design with twelve replicates, and evaluated 50 days after inoculation. The size of nematode females was higher when

  5. Drifting algal mats as an alternative habitat for benthic invertebrates: Species specific responses to a transient resource.

    Science.gov (United States)

    Norkko; Bonsdorff; Norkko

    2000-05-18

    Patchy occurrences of benthic drift algae (i.e. loose lying macroalgal mats) may increase habitat complexity on normally bare soft bottoms, but at the same time, extensive amounts of drifting algal mats are known to stress the benthic fauna. This paper presents results of the first detailed study of the fauna associated with drift algal mats in the northern Baltic Sea. In order to assess the importance of drifting algae as an alternative habitat for benthic fauna, benthic drift algal mats were sampled on shallow (2-9 m) sandy soft bottoms in the outer archipelago of the Åland Islands (Finland). Species composition, abundance and biomass of the macrofauna associated with algal mats were recorded. The results show that drifting algae at times can harbour very high abundances of invertebrates (up to 1116 individuals/g algal dryweight), surpassing invertebrate densities recorded in seagrass communities. The algal fauna varied between sites and over time, and factors such as ambient benthic fauna, exposure to wind-wave disturbance, depth, and algal coverage and condition influenced the invertebrate community composition of the algal mats. Abundance increased while individual biomass of the animals decreased over time (summer season; July-October). A series of laboratory experiments were conducted in order to test the ability of a few important benthic species to move up into, and survive in a drifting algal mat. Macoma balthica, Hydrobia spp., Nereis diversicolor and Bathyporeia pilosa were used in the experiments, and significant differences in their survival and mobility within drifting algae were recorded. This study shows that benthic species differ significantly in their ability to utilise the algal mats, with mainly opportunistic and mobile taxa such as Hydrobia spp., Chironomidae and Ostracoda benefiting from the algae, whereas infaunal species such as M. balthica and B. pilosa are negatively affected. The occurrence of eutrophication induced drifting macroalgal

  6. Carbon uptake, microbial community structure, and mineralization of layered mats from Imperial Geyser, Yellowstone National Park

    Science.gov (United States)

    Woycheese, K. M.; Grabenstatter, J.; Haddad, A.; Ricci, J. N.; Johnson, H.; Berelson, W.; Spear, J. R.; Caporaso, J. G.; International Geobiology Course 2011

    2011-12-01

    Layered microbial mats provide an analog for early microbial communities, and remain one of the few microbiological structures consistently preserved in the geologic record. Despite this, growth rates, metabolic capabilities, and methods of mineralization in modern communities are poorly understood. Imperial Geyser, an alkaline siliceous hot spring in Yellowstone National Park, provides a useful setting to study these parameters. Mat and water samples (T = 64-40 °C) were collected for 13C analysis and 13C-spiked bicarbonate and acetate incubation experiments. Carbon isotopes were measured for the stream water, pore water and biomass. We experimentally determined rates of bicarbonate uptake, acetate uptake and mineral content. Bicarbonate uptake rates ranged from 0 - 0.4% per day, while acetate uptake rates ranged from 0 - 2.0% per day. These results indicate that the mat biomass is capable of turnover in about 300 days resulting in potential growth rates of 1-2 cm/year. Organic carbon content (% dry weight) ranged from 2 to 16%, and decreased with depth in the mat. The mineral content of these mats is predominantly amorphous SiO2. An inverse correlation between mineral percent and bicarbonate uptake rate was observed, suggesting that there may be a link between metabolism and the prevention of mineralization. Comparing the 13C and carbon uptake rates with 16S rDNA pyrosequencing data we were able to hypothesize the carbon fixation pathways and heterotrophic interactions occurring in this environment. In general, two patterns of 13C values were observed. The first pattern was characterized by increased heterotrophy with depth. In the other, preliminary evidence supporting a photoheterotrophic lifestyle for Roseiflexus spp. was found.

  7. Nitrogen cycle in microbial mats: completely unknown?

    Science.gov (United States)

    Coban, O.; Bebout, B.

    2015-12-01

    Microbial mats are thought to have originated around 3.7 billion years ago, most likely in the areas around submarine hydrothermal vents, which supplied a source of energy in the form of reduced chemical species from the Earth's interior. Active hydrothermal vents are also believed to exist on Jupiter's moon Europa, Saturn's moon Enceladus, and on Mars, earlier in that planet's history. Microbial mats have been an important force in the maintenance of Earth's ecosystems and the first photosynthesis was also originated there. Microbial mats are believed to exhibit most, if not all, biogeochemical processes that exist in aquatic ecosystems, due to the presence of different physiological groups of microorganisms therein. While most microbially mediated biogeochemical transformations have been shown to occur within microbial mats, the nitrogen cycle in the microbial mats has received very little study in spite of the fact that nitrogen usually limits growth in marine environments. We will present the first results in the determination of a complete nitrogen budget for a photosynthetic microbial mat. Both in situ sources and sinks of nitrogen in photosynthetic microbial mats are being measured using stable isotope techniques. Our work has a particular focus on recently described, but poorly understood, processes, e.g., anammox and dissimilatory nitrate reduction, and an emphasis on understanding the role that nitrogen cycling may play in generating biogenic nitrogen isotopic signatures and biomarker molecules. Measurements of environmental controls on nitrogen cycling should offer insight into the nature of co-evolution of these microbial communities and their planets of origin. Identifying the spatial (microscale) as well as temporal (diel and seasonal) distribution of nitrogen transformations, e.g., rates of nitrification and denitrification, within mats, particularly with respect to the distribution of photosynthetically-produced oxygen, is anticipated. The results

  8. Leptospira spp. and Toxoplasma gondii antibodies in vampire bats (Desmodus rotundus in Botucatu region, SP, Brazil

    Directory of Open Access Journals (Sweden)

    CB Zetun

    2009-01-01

    Full Text Available The destruction of natural ecosystems has caused several problems to humans and other animals; herein we investigate the close relationship among vampire bats, humans and domestic animals. Toxoplasma gondii and Leptospira spp. infections are two worldwide zoonoses that provoke serious damage to animals. To determine the prevalence of bats seropositive for toxoplasmosis and leptospirosis in the Botucatu region, 204 serum samples of vampire bats (Desmodus rotundus were tested for T. gondii antibodies by modified agglutination test (MAT-t and for Leptospira spp. by microscopic agglutination test (MAT-l. No animal was tested positive for T. gondii while leptospiral positivity was 7.8% for Pyrogenes, Shermani and Javanica serovars, with titers varying from 100 to 1,600. Thus, it was verified that D. rotundus does not play a relevant role in toxoplasmosis epidemiology. However, these bats can be important in the maintenance of Leptospira spp. in the environment.

  9. Electromagnetic shielding mats: facts and fiction.

    Science.gov (United States)

    Leitgeb, N; Cech, R

    2007-01-01

    The use of electricity is accompanied by electric and magnetic fields which, intended or not, became a part of our environment. However, fear from environmental electromagnetic fields (EMFs) is widespread and so is business with fear. A number of more or less serious products including miracle products are placed on the market partly at excessive costs. By numerical simulation the efficiency of electromagnetic shielding mats was investigated and claims of manufacturers and their cited expert opinions checked. It could be shown that such products do not fulfil the justified expectations of customers, neither in the extremely low frequency (ELF) nor in the radiofrequency (RF) range. On the contrary, these mats usually make things even worse. The connection to ground, if available, might increase the belief on shielding efficiency, but in fact it even enhances fields instead of improving shielding. The electric conductivity of the mat material plays a minor role in the ELF range and enhances field increase in the RF range. It can not explain the enormous price differences. It could be shown that positive reports can be explained by result picking and exceptional arrangements of selected field sources. Overall, the investigation showed that manufacturer's claims about the shielding effectiveness are misleading and fool the customers about the real situation. Therefore, acquisition and use of electromagnetic shielding mats must be strongly discouraged.

  10. Bacillamides from a hypersaline microbial mat bacterium.

    Science.gov (United States)

    Socha, Aaron M; Long, Richard A; Rowley, David C

    2007-11-01

    Chemical studies of a Bacillus endophyticus isolated from a Bahamian hypersaline microbial mat led to the isolation of bacillamides B and C, new tryptamide thiazole metabolites. Bioassay-guided fractionation using a HPLC-UV-MS bioassay technique enabled the detection of these trace fermentation products, and their total structures were elucidated by combined spectroscopic techniques.

  11. HiRadMat: materials under scrutiny

    CERN Multimedia

    Anaïs Schaeffer

    2011-01-01

    CERN's new facility, HiRadMat (High Radiation to Materials), which is designed to test materials for the world's future particle accelerators, should be operational and welcoming its first experiments by the end of the year.   The HiRadMat facility, located in the TNC tunnel. The materials used in the LHC and its experiments are exposed to very high-energy particles. The LHC machine experts obviously didn't wait for the first collisions in the world's most powerful accelerator to put the materials through their paces - the equipment was validated following a series of stringent tests. And these tests will get even tougher now, with the arrival of HiRadMat. The tunnel that formerly housed the West Area Neutrino Facility (WANF) has been completely revamped to make way for CERN's latest facility, HiRadMat. Supported by the Radioprotection service, a team from the Engineering (EN) Department handled the dismantling operations from October 2009 to December 2010. "We could only work on disman...

  12. Thermodynamics and phase transformations the selected works of Mats Hillert

    CERN Document Server

    Lilensten, Jean

    2006-01-01

    This book is a compendium of Mat Hillert's publications. Mat Hillert is a world specialist in metal alloy at the origin of a universal computing code used to calculate the diagrams of phase. This work is in English.

  13. Method for production of carbon nanofiber mat or carbon paper

    Energy Technology Data Exchange (ETDEWEB)

    Naskar, Amit K.

    2015-08-04

    Method for the preparation of a non-woven mat or paper made of carbon fibers, the method comprising carbonizing a non-woven mat or paper preform (precursor) comprised of a plurality of bonded sulfonated polyolefin fibers to produce said non-woven mat or paper made of carbon fibers. The preforms and resulting non-woven mat or paper made of carbon fiber, as well as articles and devices containing them, and methods for their use, are also described.

  14. Disruption of photoautotrophic intertidal mats by filamentous fungi

    DEFF Research Database (Denmark)

    Carreira, Cátia; Staal, Marc Jaap; Falkoski, Daniel

    2015-01-01

    Summary: Ring-like structures, 2.0-4.8cm in diameter, observed in photosynthetic microbial mats on the Wadden Sea island Schiermonnikoog (the Netherlands) showed to be the result of the fungus Emericellopsis sp. degrading the photoautotrophic top layer of the mat. The mats were predominantly comp...

  15. Disruption of photoautotrophic intertidal mats by filamentous fungi

    NARCIS (Netherlands)

    Carreira, C.; Staal, M.; Falkoski, D; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D.

    2015-01-01

    Ring-like structures, 2.0-4.8 cm in diameter, observed in photosynthetic microbial mats on the Wadden Sea island Schiermonnikoog (the Netherlands) showed to be the result of the fungus Emericellopsis sp. degrading the photoautotrophic top layer of the mat. The mats were predominantly composed of cya

  16. Disruption of photoautotrophic intertidal mats by filamentous fungi

    NARCIS (Netherlands)

    Carreira, Cátia; Staal, Marc; Falkoski, Daniel; De Vries, Ronald P.; Middelboe, Mathias; Brussaard, Corina P D

    2015-01-01

    Ring-like structures, 2.0-4.8cm in diameter, observed in photosynthetic microbial mats on the Wadden Sea island Schiermonnikoog (the Netherlands) showed to be the result of the fungus Emericellopsis sp. degrading the photoautotrophic top layer of the mat. The mats were predominantly composed of cyan

  17. Disruption of photoautotrophic intertidal mats by filamentous fungi

    NARCIS (Netherlands)

    Carreira, C; Staal, M.; Falkoski, D.; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D.

    2015-01-01

    Ring-like structures, 2.0–4.8?cm in diameter, observed in photosynthetic microbial mats on the Wadden Sea island Schiermonnikoog (the Netherlands) showed to be the result of the fungus Emericellopsis sp. degrading the photoautotrophic top layer of the mat. The mats were predominantly composed of cya

  18. Beaded Fiber Mats of PVA Containing Unsaturated Heteropoly Salt

    Institute of Scientific and Technical Information of China (English)

    Guo Cheng YANG; Yan PAN; Jian GONG; Chang Lu SHAO; Shang Bin WEN; Chen SHAO; Lun Yu QU

    2004-01-01

    Poly(vinyl alcohol) (PVA) fiber mats containing unsaturated heteropoly salt was prepared for the first time. IR, X-ray diffraction and SEM photographs characterized the beaded fiber mats.The viscoelasticity and the conductivity of the solution were the key factors that influence the formation of the beaded fiber mats.

  19. Isolation and Antimicrobial Testing of Aeromonas spp., Citrobacter spp., Cronobacter spp., Enterobacter spp., Escherichia spp., Klebsiella spp., and Trabulsiella spp. from the Gallbladder of Pigs.

    Science.gov (United States)

    Evangelopoulou, Grammato; Filioussis, Georgios; Kritas, Spyridon; Kantere, Maria; Burriel, Angeliki R

    2015-01-01

    The presence of Gram-negative bacteria species, other than Salmonella spp., in the gallbladder of pigs was examined. Isolated Gram-negative bacteria were assigned to species using the Microgen™ GnA+B-ID Systems. Of the 64 isolated strains 43 were identified as Escherichia coli, seven as Enterobacter spp., three each as Klebsiella spp., Citrobacterfreundii, Aeromonas hydrophila and Cronobacter sakazakii and one each as Escherichiafergusonii and Trabulsiella guamensis. Their antibiograms showed very high resistance to ampicillin, amoxicillin, tetracycline, chloramphenicol and sulfamethoxazole/trimethoprim. It was concluded that the pigs' gallbladder is a reservoir of potentially pathogenic Gram-negative bacteria for pork consumers.

  20. Contributions of ectomycorrhizal fungal mats to forest soil respiration

    Directory of Open Access Journals (Sweden)

    C. L. Phillips

    2012-02-01

    Full Text Available Distinct aggregations of fungal hyphae and rhizomorphs, or "mats" formed by some genera of ectomycorrhizal (EcM fungi are common features of soils in coniferous forests of the Pacific Northwest. We measured in situ respiration rates of Piloderma mats and neighboring non-mat soils in an old-growth Douglas-fir forest in Western Oregon to investigate whether there was an incremental increase in respiration from mat soils, and to estimate mat contributions to total soil respiration. We found that areas where Piloderma mats colonized the organic horizon often had higher soil surface flux than non-mats, with the incremental increase in respiration averaging 16 % across two growing seasons. Both soil physical factors and biochemistry were related to the higher surface flux of mat soils. When air-filled pore space was low (high soil moisture, soil CO2 production was concentrated into near-surface soil horizons where mats tend to colonize, resulting in greater apparent differences in respiration between mat and non-mat soils. Respiration rates were also correlated with the activity of chitin-degrading soil enzymes. This suggests that the elevated activity of fungal mats may be related to consumption or turnover of chitinous fungal cell-wall materials. We found Piloderma mats present across 57 % of the soil surface in the study area, and use this value to estimate a respiratory contribution from mats at the stand-scale of about 9 % of total soil respiration. The activity of EcM mats, which includes both EcM fungi and microbial associates, was estimated to constitute a substantial portion of total soil respiration in this old-growth Douglas-fir forest.

  1. Mudd's disease (MAT I/III deficiency) : a survey of data for MAT1A homozygotes and compound heterozygotes

    NARCIS (Netherlands)

    Chien, Yin-Hsiu; Abdenur, Jose E.; Baronio, Federico; Bannick, Allison Anne; Corrales, Fernando; Couce, Maria; Donner, Markus G.; Ficicioglu, Can; Freehauf, Cynthia; Frithiof, Deborah; Gotway, Garrett; Hirabayashi, Koichi; Hofstede, FC; Hoganson, George; Hwu, Wuh-Liang; James, Philip; Kim, Sook; Korman, Stanley H.; Lachmann, Robin; Levy, Harvey; Lindner, Martin; Lykopoulou, Lilia; Mayatepek, Ertan; Muntau, Ania; Okano, Yoshiyuki; Raymond, Kimiyo; Rubio-Gozalbo, Estela; Scholl-Buergi, Sabine; Schulze, Andreas; Singh, Rani; Stabler, Sally; Stuy, Mary; Thomas, Janet; Wagner, Conrad; Wilson, William G.; Wortmann, Saskia; Yamamoto, Shigenori; Pao, Maryland; Blom, Henk J.; Hofstede, FC

    2015-01-01

    Background: This paper summarizes the results of a group effort to bring together the worldwide available data on patients who are either homozygotes or compound heterozygotes for mutations in MAT1A. MAT1A encodes the subunit that forms two methionine adenosyltransferase isoenzymes, tetrameric MAT I

  2. Impregnation of thermoplastic resin in jute fiber mat

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Impregnation rate of thermoplastic resin (polypropylene) in jute fiber mat and influence of relative factors on impregnation were studied,aiming to develop the continuous melt impregnation technique and to investigate the effect of impregnation rate and temperature on processing conditions and mechanical properties of natural fiber mat-reinforced thermoplastics.Influence of pressure on porosity of fiber mat and effect of melt viscosity on impregnation rate were also investigated.The modified capillary rheometer was used as apparatus and experimental data were analyzed based on the one-dimension Darcy's law.Results showed that at a given pressure,the impregnation rate is inversely proportional to melt viscosity and jute fiber mat has higher porosity than glass fiber mat.The architecture,compressibility,permeability and fiber diameter of jute fiber mat were compared with those of glass fiber mat and their effects on impregnation were discussed further.It could be seen that the average diameter of jute fiber is much bigger;the porosity of jute fiber mat is significantly higher and inner bundle impregnation does not exist in jute fiber mat.Therefore,it is not difficult to understand why the impregnation rate in jute fiber mat is 3.5 times higher and permeability is 14 times greater.Kozeny constants of jute and glass fiber mats calculated based on the capillary model are 2950 and 442,respectively.

  3. Seroprevalence of Neospora spp. in horses in South of Iran.

    Science.gov (United States)

    Moraveji, M; Hosseini, M H; Amrabadi, O; Rahimian, A; Namazi, F; Namavari, M

    2011-12-01

    Neospora caninum, an apicomplexan protozoan parasite, is recognized as a major cause of abortion in cattle. However, limited information is presently available on the seroprevalence of Neospora antibodies in horses worldwide. The aim of the present study is to determine serological prevalence of Neospora infection in horses in Iran. Blood samples were obtained from 200 horses and tested for serum antibodies against Neospora spp. by the Neospora modified direct agglutination test (N-MAT). Antibodies were found in 64 (32%) horses being tested with titers of 1:80. This is the first serological survey for Neospora antibodies performed on horses in Iran.

  4. Phylogeny of Korean Opuntia spp. based on multiple DNA regions

    OpenAIRE

    SRIKANTH, KRISHNAMOORTHY; WHANG, SUNG SOO

    2015-01-01

    Although Opuntia species are of high agronomic value in Korea, the taxonomic position of Korean Opuntia species has never been investigated. The taxonomic position of Korean Opuntia spp. Within the tribe Opuntieae was examined based on DNA sequence analysis of matK, trnL-F, atpB-rbcl, and ITS regions. The total amplified sequence length was 2977 bp; only 18 parsimonious informative sites were present, even though they belonged to different species. A phylogenetic tree using both the maximum l...

  5. Under Ground Cable Sizing Using MAT LAB

    Directory of Open Access Journals (Sweden)

    B. V. R. Uday Kiran

    2014-06-01

    Full Text Available The main theme of this paper is to explain the procedure to calculate the cross sectional area of a conductor of an underground cable for a specified power & voltage ratings. This paper will also explain one of the simplest ways to calculate the cross section. In this paper we analyzed various factors that effect in deciding the ampacity of the conductor. We developed a Mat lab code to find the cross sectional area by including some of the parameters and also the voltage drop , maximum permissible voltage drop for that size of the conductor and also the number of runs of the cable that are to be laid.

  6. Mats Reidius : Rootsi taluliit tahab üle minna eurole / Mats Reidius ; interv. Annika Poldre

    Index Scriptorium Estoniae

    Reidius, Mats

    2003-01-01

    Rootsi majandusteadlane Mats Reidius Rootsi põllumajanduse olukorrast enne Rootsi liitumist EL-iga, Rootsi talunike võitudest-kaotustest El-iga ühinemisel, muutustest Rootsi toiduaineturul pärast EL-iga liitumist, Rootsi talunike arvamusest euro kohta

  7. Pemanfaatan Daun Tanaman Sukun (Artocarpus altilis) Sebagai Anti Nyamuk Elektrik dalam Membunuh Nyamuk Aedes, spp

    OpenAIRE

    Sitrorus, Memory Fitri

    2015-01-01

    Aedes,spp mosquitoes are vectors of various diseases (dengue fever, filariasis, chikungunya and yellow fever). To controll the vector borne disease can be done by controlling its vector. One of the way to control the disease is using the synthetic insecticide that are toxic to human, so it is necessary to use natural insecticide. The purpose of this study is to utilize the leaves of breadfruit plant (Artocarpus altilis) as an electrical mat to kill mosquito Aedes. This research was quas...

  8. New universal matK primers for DNA barcoding angiosperms

    Institute of Scientific and Technical Information of China (English)

    Jing YU; Jian-Hua XUE; Shi-Liang ZHOU

    2011-01-01

    The chloroplast maturase K gene (matK) is one of the most variable coding genes of angiosperms and has been suggested to be a "barcode" for land plants. However, matK exhibits low amplification and sequencing rates due to low universality of currently available primers and mononucleotide repeats. To resolve these technical problems, we evaluated the entire matK region to find a region of 600-800 bp that is highly variable, represents the best of all matK regions with priming sites conservative enough to design universal primers, and avoids the mononucleotide repeats. After careful evaluation, a region in the middle was chosen and a pair of primers named natK472F and matK1248R was designed to amplify and sequence the matK fragment of approximately 776 bp. This region encompasses the most variable sites, represents the entire matK region best, and also exhibits high amplification rates and quality of sequences. The universality of this primer pair was tested using 58 species from 47 families of angiosperm plants. The primers showed a strong amplification (93.1%) and sequencing (92.6%)successes in the species tested. We propose that the new primers will solve, in part, the problems encountered when using matK and promote the adoption of matK as a DNA barcode for angiosperms.

  9. Use of palm-mat geotextiles for rainsplash erosion control

    Science.gov (United States)

    Bhattacharyya, R.; Fullen, M. A.; Davies, K.; Booth, C. A.

    2010-07-01

    Soil detachment by raindrop action (rainsplash erosion) is a very important subprocess of erosion by water. It is a particular problem in the UK as most soils are sandy or loamy sand in texture and lands have gentle to medium slope. However, few studies report potential rainsplash erosion control options under field conditions. Hence, the utilization of palm-mat geotextiles as a rainsplash erosion control technique was investigated at Hilton, east Shropshire, U.K. (52°33'5.7″ N, 2°19'18.3″ W). Geotextile-mats constructed from Borassus aethiopum (Borassus palm of West Africa) and Mauritia flexuosa (Buriti palm of South America) leaves are termed Borassus mats and Buriti mats, respectively. Two-year field experiments were conducted at Hilton to study the effects of emplacing Borassus and Buriti mats on rainsplash erosion of a loamy sand soil. Two sets (12 plots each) of experiments were established to study the effects of these mats on splash height and splash erosion. Splash height needs to be known to assess the transport mechanism of major soil fraction and its constituents on sloping land by rainsplash. In both sets, six randomly-selected plots were covered with mats, and the rest were bare. Results (during 22/01/2007‒23/01/2009; total precipitation = 1731.5 mm) show that Borassus mat-covered plots had ˜ 89% ( P 0.05) effect in rainsplash erosion control during that period, although plots with Buriti mats significantly ( P 0.05) improve selected soil properties (i.e., soil organic matter, particle size distribution, aggregate stability and total soil carbon) as soil organic matter (SOM) input from mat-decomposition was much less than total SOM content. However, the changes in fine and medium sand contents (after 2 years) in the Borassus covered plots were significantly ( P < 0.05; n = 6) related to the total rainsplash erosion during 2007‒2009. Emplacement of Borassus and Buriti mats on bare soils did not decrease SOM contents after 2 years, indicating

  10. Allelopathy-mediated Competition in Microbial Mats from Antarctic Lakes.

    Science.gov (United States)

    Slattery, Marc; Lesser, Michael P

    2017-02-18

    Microbial mats are vertically stratified communities that host a complex consortium of microorganisms, dominated by cyanobacteria, that compete for available nutrients and environmental niches, within these extreme habitats. The Antarctic Dry Valleys near McMurdo Sound include a series of lakes within the drainage basin that are bisected by glacial traverses. These lakes are traditionally independent, but recent increases in glacial melting have allowed two lakes (Chad and Hoare) to become connected by a meltwater stream. Microbial mats were collected from these lakes, and cultured under identical conditions at the McMurdo Station laboratory. Replicate pairings of the microbial mats exhibited consistent patterns of growth inhibition indicative of competitive dominance. Natural products were extracted from the microbial mats, and a disc diffusion assay was utilized to show that allelochemical compounds mediate competitive interactions. Both microscopy and 16S rRNA sequencing show that these mats contain significant populations of cyanobacteria known to produce allelochemicals. Two compounds were isolated from these microbial mats that might be important in the chemical ecology of these psychrophiles. In other disc:mat pairings, including extract versus mat of origin, the allelochemicals exhibited no effect. Taken together, these results indicate that Antarctic lake microbial mats can compete via allelopathy.

  11. Bartonella spp. in Bats, Guatemala

    OpenAIRE

    BAI, YING; Kosoy, Michael; Recuenco, Sergio; Alvarez, Danilo; Moran, David; Turmelle, Amy; Ellison, James; Garcia, Daniel L.; Estevez, Alejandra; Lindblade, Kim; Rupprecht, Charles

    2011-01-01

    To better understand the role of bats as reservoirs of Bartonella spp., we estimated Bartonella spp. prevalence and genetic diversity in bats in Guatemala during 2009. We found prevalence of 33% and identified 21 genetic variants of 13 phylogroups. Vampire bat–associated Bartonella spp. may cause undiagnosed illnesses in humans.

  12. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

    Directory of Open Access Journals (Sweden)

    Young-Mo eKim

    2015-04-01

    Full Text Available Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics for understanding community response to such changing environmental conditions. In this study, we quantified volatile organic acids, polar metabolites (amino acids, glycolytic and citric acid cycle intermediates, nucleobases, nucleosides, and sugars, wax esters, and polyhydroxyalkanoates, resulting in the identification of 104 metabolites and related molecules in thermal chlorophototrophic microbial mat cores collected over a diel cycle in Mushroom Spring, Yellowstone National Park. A limited number of predominant taxa inhabit this community and their functional potentials have been previously identified through metagenomic and metatranscriptomic analyses and in situ metabolisms, and metabolic interactions among these taxa have been hypothesized. Our metabolomics results confirmed the diel cycling of photorespiration (e.g. glycolate and fermentation (e.g. acetate, propionate, and lactate products, the carbon storage polymers polyhydroxyalkanoates, and dissolved gases (e.g. H2 and CO2 in the waters overlying the mat, which were hypothesized to occur in major mat chlorophototrophic community members. In addition, we have formulated the following new hypotheses: 1 the morning hours are a time of biosynthesis of amino acids, DNA, and RNA; 2 photo-inhibited cells may also produce lactate via fermentation as an alternate metabolism; 3 glycolate and lactate are exchanged among Synechococcus and Roseiflexus spp.; and 4 fluctuations in many metabolite pools (e.g. wax esters at different times of day result from species found at different depths within the mat responding to temporal differences in their niches

  13. Chimie des matériaux hybrides

    OpenAIRE

    Sanchez, Clément

    2014-01-01

    Cours : chimie des matériaux hybrides Depuis plus d’une vingtaine d’années, les méthodes d’élaboration de nanomatériaux inorganiques ou hybrides reposant sur la « chimie douce » suscitent un très fort intérêt, aussi bien dans le monde universitaire qu’industriel. Ces méthodes de synthèse mettent en jeu des réactions de « polymérisation » au sens large s’effectuant à température ambiante, en solvant aqueux ou organique, à partir de précurseurs moléculaires ou nanoparticulaires. Ces conditions ...

  14. Matting of hair: what is the role of conditioners?

    Science.gov (United States)

    Rigopoulos, D; Kontochristopoulos, G; Kalogirou, O; Gregoriou, S; Katsambas, A

    2006-03-01

    Matting of the hair is a very rare and multifactorial condition affecting usually women. We present three female patients with matting of the hair as a result of the shampoo used. In all three cases, cutting of the affected hair was unavoidable.

  15. Matting Of Hair Due To ′Sunsilk′ Shampoo

    Directory of Open Access Journals (Sweden)

    Nadeem Mohd

    1995-01-01

    Full Text Available Matting of hair been reported from time to time due to treatment of hair with detergent, shampoos, waving lotions, setting lotions and bleaches. A case of matting of hairs in a young girl due to a change in the brand of shampoo is reported.

  16. Adhesins of Bartonella spp.

    Science.gov (United States)

    O'Rourke, Fiona; Schmidgen, Thomas; Kaiser, Patrick O; Linke, Dirk; Kempf, Volkhard A J

    2011-01-01

    Adhesion to host cells represents the first step in the infection process and one of the decisive features in the pathogenicity of Bartonella spp. B. henselae and B. quintana are considered to be the most important human pathogenic species, responsible for cat scratch disease, bacillary angiomatosis, trench fever and other diseases. The ability to cause vasculoproliferative disorders and intraerythrocytic bacteraemia are unique features of the genus Bartonella. Consequently, the interaction with endothelial cells and erythrocytes is a focus in Bartonella research. The genus harbours a variety of trimeric autotransporter adhesins (TAAs) such as the Bartonella adhesin A (BadA) of B. henselae and the variably expressed outer-membrane proteins (Vomps) of B. quintana, which display remarkable variations in length and modular construction. These adhesins mediate many of the biologically-important properties of Bartonella spp. such as adherence to endothelial cells and extracellular matrix proteins and induction of angiogenic gene programming. There is also significant evidence that the laterally acquired Trw-conjugation systems of Bartonella spp. mediate host-specific adherence to erythrocytes. Other potential adhesins are the filamentous haemagglutinins and several outer membrane proteins. The exact molecular functions of these adhesins and their interplay with other pathogenicity factors (e.g., the VirB/D4 type 4 secretion system) need to be analysed in detail to understand how these pathogens adapt to their mammalian hosts.

  17. MAT2A mutations predispose individuals to thoracic aortic aneurysms.

    Science.gov (United States)

    Guo, Dong-chuan; Gong, Limin; Regalado, Ellen S; Santos-Cortez, Regie L; Zhao, Ren; Cai, Bo; Veeraraghavan, Sudha; Prakash, Siddharth K; Johnson, Ralph J; Muilenburg, Ann; Willing, Marcia; Jondeau, Guillaume; Boileau, Catherine; Pannu, Hariyadarshi; Moran, Rocio; Debacker, Julie; Bamshad, Michael J; Shendure, Jay; Nickerson, Deborah A; Leal, Suzanne M; Raman, C S; Swindell, Eric C; Milewicz, Dianna M

    2015-01-08

    Up to 20% of individuals who have thoracic aortic aneurysms or acute aortic dissections but who do not have syndromic features have a family history of thoracic aortic disease. Significant genetic heterogeneity is established for this familial condition. Whole-genome linkage analysis and exome sequencing of distant relatives from a large family with autosomal-dominant inheritance of thoracic aortic aneurysms variably associated with the bicuspid aortic valve was used for identification of additional genes predisposing individuals to this condition. A rare variant, c.1031A>C (p.Glu344Ala), was identified in MAT2A, which encodes methionine adenosyltransferase II alpha (MAT IIα). This variant segregated with disease in the family, and Sanger sequencing of DNA from affected probands from unrelated families with thoracic aortic disease identified another MAT2A rare variant, c.1067G>A (p.Arg356His). Evidence that these variants predispose individuals to thoracic aortic aneurysms and dissections includes the following: there is a paucity of rare variants in MAT2A in the population; amino acids Glu344 and Arg356 are conserved from humans to zebrafish; and substitutions of these amino acids in MAT Iα are found in individuals with hypermethioninemia. Structural analysis suggested that p.Glu344Ala and p.Arg356His disrupt MAT IIα enzyme function. Knockdown of mat2aa in zebrafish via morpholino oligomers disrupted cardiovascular development. Co-transfected wild-type human MAT2A mRNA rescued defects of zebrafish cardiovascular development at significantly higher levels than mRNA edited to express either the Glu344 or Arg356 mutants, providing further evidence that the p.Glu344Ala and p.Arg356His substitutions impair MAT IIα function. The data presented here support the conclusion that rare genetic variants in MAT2A predispose individuals to thoracic aortic disease.

  18. First insights into fern matK phylogeny.

    Science.gov (United States)

    Kuo, Li-Yaung; Li, Fay-Wei; Chiou, Wen-Liang; Wang, Chun-Neng

    2011-06-01

    MatK, the only maturase gene in the land plant plastid genome, is a very popular phylogenetic marker that has been extensively applied in reconstructing angiosperm phylogeny. However, the use of matK in fern phylogeny is largely unknown, due to difficulties with amplification: ferns have lost the flanking trnK exons, typically the region used for designing stable priming sites. We developed primers that are either universal or lineage-specific that successfully amplify matK across all fern families. To evaluate whether matK is as powerful a phylogenetic marker in ferns as in angiosperms, we compared its sequence characteristics and phylogenetic performance to those of rbcL and atpA. Among these three genes, matK has the highest variability and substitution evenness, yet shows the least homoplasy. Most importantly, applying matK in fern phylogenetics better resolved relationships among families, especially within eupolypods I and II. Here we demonstrate the power of matK for fern phylogenetic reconstruction, as well as provide primers and extensive sequence data that will greatly facilitate future evolutionary studies of ferns.

  19. Using Intact Iron Microbial Mats to Gain Insights Into Mat Ecology and Geochemical Niche at the Microbial Scale

    Science.gov (United States)

    Glazer, B. T.; Chan, C. S. Y.; Mcallister, S.; Leavitt, A.; Emerson, D.

    2015-12-01

    Microbial mats are formed by microorganisms working in coordinated symbiosis, often benefitting the community by controlling the local geochemical or physical environment. Thus, the ecology of the mat depends on the individual roles of microbes organized into niches within a larger architecture. Chemolithotrophic Fe-oxidizing bacteria (FeOB) form distinctive Fe oxyhydroxide biominerals which constitute the building blocks of the mat. However, the majority of our progress has been in understanding the overall community structure. Understanding the physical mat structure on the microbial scale is important to unraveling FeOB evolution, the biogeochemistry and ecology of Fe-rich habitats, and ultimately interpreting FeOB biosignatures in the rock record. Mats in freshwater and marine environments contain strikingly similar biomineral morphologies, yet they are formed by phylogenetically distinct microorganisms. This suggests that the overall architecture and underlying genetics of freshwater and marine mats has evolved to serve particular roles specific to Fe oxidation. Thus, we conducted a comparative study of Fe seep freshwater mats and marine hydrothermal mats. We have developed a new approach to sampling Fe mats in order to preserve the delicate structure for analysis by confocal and scanning electron microscopy. Our analyses of these intact mats show that freshwater and marine mats are similarly initiated by a single type of structure-former. These ecosystem engineers form either a hollow sheath or a twisted stalk biomineral during mat formation, with a highly directional structure. These microbes appear to be the vanguard organisms that anchor the community within oxygen/Fe(II) gradients, further allowing for community succession in the mat interior as evidenced by other mineralized morphologies. Patterns in biomineral thickness and directionality were indicative of redox gradients and temporal changes in the geochemical environment. These observations show that

  20. IDENTIFICATION OF DIFFERENT FUSARIUM SPP. IN ALLIUM SPP. IN GERMANY.

    Science.gov (United States)

    Boehnke, B; Karlovsky, P; Pfohl, K; Gamliel, A; Isack, Y; Dehne, H W

    2015-01-01

    In 2013 Allium cepa bulbs from different fields in Northern and Southern Germany, seeds and sets from onion breeders were analysed for infestation with Fusarium species. The same investigation was done in 2014 with different edible Allium spp. from local markets. Different Fusarium spp. were isolated and identified by morphological characterisation. 24 different Fusarium spp. were identified. The diversity of Fusarium spp. and the intensity of infestation was higher on edible bulbs compared to the younger sets and seeds. The analysed onions and other edible Allium spp. from local markets showed also high contents of different Fusarium species. The most prevalent identified Fusarium sp. in the analysed Allium spp. in Germany was Fusarium oxysporum which can cause the Fusarium Basal Rot, followed by Fusarium solani. Fusarium proliferatum, which can cause the Fusarium Salmon Blotch in onions, could be detected in about half of the sampled onion fields and in approximately 10% of all analysed onions from fields. Also in the onion sets, on the surface of the seeds and in other edible Allium spp. F. proliferatum could be identified. Besides F. proliferatum, further mycotoxin producing Fusarium spp. like Fusarium equiseti or Fusarium tricinctum were identified. Other Fusarium spp. like Fusarium sporotrichioides and Fusarium poae were first described in Allium sp. in this study. The two most prevalent Fusarium spp. F. oxysporum and F. solani are able to produce mycotoxins like enniatins, fumonisins, moniliformin and T-2 toxins. Fusarium sp. like F. proliferatum, F. equiseti and F. tricinctum are able to produce additional toxins like beauvericins, zearalenone and diacetoscirpenol. This high number of Fusarium spp., which are able to produce a broad spectrum of different mycotoxins, could be a potential health risk for human beings and livestock.

  1. Electrospun graphene-ZnO nanofiber mats for photocatalysis applications

    Energy Technology Data Exchange (ETDEWEB)

    An, Seongpil; Joshi, Bhavana N.; Lee, Min Wook; Kim, Na Young; Yoon, Sam S., E-mail: skyoon@korea.ac.kr

    2014-03-01

    Graphene-decorated zinc oxide (G-ZnO) nanofibers were fabricated, for the first time, by electrospinning. The effect of graphene concentration on the properties of G-ZnO mats were investigated by scanning electron microscopy, X-ray diffraction, Raman spectroscopy, and thermo gravimetric analysis. The G-ZnO mats decorated with 0.5 wt.% of graphene showed excellent photocatalytic activity through degradation of methylene blue under UV irradiation. The highest photocatalytic activity (80% degradation) was observed for 0.5 wt.% G-ZnO mats annealed at 400 °C after 4 h of UV irradiation.

  2. [Activity of doripenem against Pseudomonas spp. and Acinetobacter spp. rods].

    Science.gov (United States)

    Bogiel, Tomasz; Deptuła, Aleksander; Gospodarek, Eugenia

    2009-01-01

    Doripenem, the newest carbapenem was approved in 2008 by the European Medicines Agency for the treatment of complicated intra-abdominal infections and complicated urinary tract infections. Its spectrum of activity is similar to that of meropenem and imipenem/cilastatin. The aim of this study was to compare in vitro activity of doripenem against nonfermentative Gram-negative rods. A total of 235 strains of Pseudomonas spp. (74.9%) and Acinetobacter spp. (25.1%) were included into the study. Strains were isolated in The Department of Clinical Microbiology of the University Hospital No 1 in Bydgoszcz and identified using ID GN tests (bioMérieux). To determine susceptibility to doripenem and other carbapenems disc-diffusion method was applied. Percentage of doripenem resistant strains reached 28.4% and 39.0% for Pseudomonas spp. and Acinetobacter spp, respectively. All doripenem sensitive or intermediate Acinetobacter spp. strains were simultaneously sensitive to imipenem and meropenem. Activity of imipenem and meropenem among doripenem resistant Acinetobacter spp. were represented by 60.9% and 56.5% strains, respectively. Activity of imipenem and meropenem among doripenem resistant Pseudomonas spp. strains were represented by 12.0% and 18.0%, respectively. Occurence of one doripenem sensitive Pseudomonas spp. strain simultaneously resistant to imipenem and meropenem was observed.

  3. Counting viruses and bacteria in photosynthetic microbial mats

    NARCIS (Netherlands)

    Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D.

    2015-01-01

    Viral abundances in benthic environments are the highest found in aquatic systems. Photosynthetic microbial mats represent benthic environments with high microbial activity and possibly high viral densities, yet viral abundances have not been examined in such systems. Existing extraction procedures

  4. Fabrication of nanofiber mats from electrospinning of functionalized polymers

    Science.gov (United States)

    Oktay, Burcu; Kayaman-Apohan, Nilhan; Erdem-Kuruca, Serap

    2014-08-01

    Electrospinning technique enabled us to prepare nanofibers from synthetic and natural polymers. In this study, it was aimed to fabricate electrospun poly(vinyl alcohol) (PVA) based nanofibers by reactive electrospinning process. To improve endurance of fiber toward to many solvents, PVA was functionalized with photo-crosslinkable groups before spinning. Afterward PVA was crosslinked by UV radiation during electrospinning process. The nanofiber mats were characterized by scanning electron microscopy (SEM). The results showed that homogenous, uniform and crosslinked PVA nanofibers in diameters of about 200 nm were obtained. Thermal stability of the nanofiber mat was investigated with thermal gravimetric analysis (TGA). Also the potential use of this nanofiber mats for tissue engineering was examined. Osteosarcoma (Saos) cells were cultured on the nanofiber mats.

  5. Thermal Protection System Materials (TPSM): 3D MAT Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The 3D MAT Project seeks to design and develop a game changing Woven Thermal Protection System (TPS) technology tailored to meet the needs of the Orion Multi-Purpose...

  6. Diversity of nitrogen-fixing bacteria in cyanobacterial mats

    OpenAIRE

    2010-01-01

    The structure of the microbial community and the diversity of the functional gene for dinitrogenase reductase and its transcripts were investigated by analyzing >1400 16S rRNA gene and nifH sequences from two microbial mats situated in the intertidal zone of the Dutch barrier island Schiermonnikoog. Although both microbial mat communities were dominated by Cyanobacteria, they differed with respect to the composition of the total bacterial community. Proteobacteria-related sequences were retri...

  7. Counting Viruses and Bacteria in Photosynthetic Microbial Mats

    OpenAIRE

    Carreira, C.; Staal, M.; Middelboe, M.; Brussaard, C.P.D.

    2015-01-01

    Viral abundances in benthic environments are the highest found in aquatic systems. Photosynthetic microbial mats represent benthic environments with high microbial activity and possibly high viral densities, yet viral abundances have not been examined in such systems. Existing extraction procedures typically used in benthic viral ecology were applied to the complex matrix of microbial mats but were found to inefficiently extract viruses. Here, we present a method for extraction and quantifica...

  8. Characterization of Carbon Mat Thermoplastic Composites: Flow and Mechanical Properties

    OpenAIRE

    Caba, Aaron C.

    2005-01-01

    Carbon mat thermoplastics (CMT) consisting of 12.7 mm or 25.4 mm long, 7.2 micrometer diameter, chopped carbon fibers in a polypropylene (PP) or poly(ethylene terephthalate) (PET) thermoplastic matrix were manufactured using the wetlay technique. This produces a porous mat with the carbon fibers well dispersed and randomly oriented in a plane. CMT composites offer substantial cost and weight savings over typical steel construction in new automotive applications. In production vehicles, aut...

  9. Antifouling Electrospun Nanofiber Mats Functionalized with Polymer Zwitterions.

    Science.gov (United States)

    Kolewe, Kristopher W; Dobosz, Kerianne M; Rieger, Katrina A; Chang, Chia-Chih; Emrick, Todd; Schiffman, Jessica D

    2016-10-06

    In this study, we exploit the excellent fouling resistance of polymer zwitterions and present electrospun nanofiber mats surface functionalized with poly(2-methacryloyloxyethyl phosphorylcholine) (polyMPC). This zwitterionic polymer coating maximizes the accessibility of the zwitterion to effectively limit biofouling on nanofiber membranes. Two facile, scalable methods yielded a coating on cellulose nanofibers: (i) a two-step sequential deposition featuring dopamine polymerization followed by the physioadsorption of polyMPC, and (ii) a one-step codeposition of polydopamine (PDA) with polyMPC. While the sequential and codeposited nanofiber mat assemblies have an equivalent average fiber diameter, hydrophilic contact angle, surface chemistry, and stability, the topography of nanofibers prepared by codeposition were smoother. Protein and microbial antifouling performance of the zwitterion modified nanofiber mats along with two controls, cellulose (unmodified) and PDA coated nanofiber mats were evaluated by dynamic protein fouling and prolonged bacterial exposure. Following 21 days of exposure to bovine serum albumin, the sequential nanofiber mats significantly resisted protein fouling, as indicated by their 95% flux recovery ratio in a water flux experiment, a 300% improvement over the cellulose nanofiber mats. When challenged with two model microbes Escherichia coli and Staphylococcus aureus for 24 h, both zwitterion modifications demonstrated superior fouling resistance by statistically reducing microbial attachment over the two controls. This study demonstrates that, by decorating the surfaces of chemically and mechanically robust cellulose nanofiber mats with polyMPC, we can generate high performance, free-standing nanofiber mats that hold potential in applications where antifouling materials are imperative, such as tissue engineering scaffolds and water purification technologies.

  10. Le matérialisme scientifique

    Science.gov (United States)

    Meunier, Jean-François

    2004-03-01

    De nos jours, il arrive quotidiennement aux grands hommes d'avoir à fréquenter d'ignorants mortels épris d'une conviction maladive que la science est la grande responsable de tous les maux du monde. Évidemment sans physique atomique, il n'y aurait pas eu d'Hiroshima et sans révolution industrielle, pas de pollution et etc. Cependant, ces accusations envers le progrès technique sont tout à fait injustes, irréfléchies et, j'irai même jusqu'à dire, irresponsables, puisque le calcul, i.e. la planification, même la plus élémentaire, est ce qui caractérise le mieux, pragmatiquement, la société humaine. À mon avis, les problèmes sociaux tireraient plutôt leur origine de sciences sociales irréalistes, qui, concrètment, inspireraient ou serviraient d'alibis à ceux qui détiennent véritablement le pouvoir. Dans cet article, je tenterai donc de démontrer la meilleure véracité et efficacité du matérialisme scientifique. Cette doctrine, dont Mario Bunge est le plus illustre représentant, s'appuy sur les résultats théoriques et expérimentaux des sciences factuelles ainsi que sur l'exactitude logique des mathématiques, utilisées ici comme langage universel de l'expression des idées. Cette conception philosophique qui s'inspire principalement du modèle des théories physiques, stipule que les réalités sociales sont, comme tout autre réalité, matérielles, mathématisables et représentables comme des systèmes en interaction. En fait, le modèle des physiciens ayant historiquement fait ses preuves en matière de testabilité et de cohérence interne est proposé d'être appliquer aux sciences sociales, aujourd'hui scindées des sciences dites pures sous l'inspiration des pseudo penseurs néo-kantiens, phénoménologiques et post-moderne. Cette nouvelle approche permettrait ainsi d'évoluer plus exactement vers une compréhension des bases sociales et biologiques du comportement humain afin de développer une éthique sans cesse plus r

  11. Mechanical behavior of ultralong multiwalled carbon nanotube mats

    Science.gov (United States)

    Deck, Christian P.; Flowers, Jason; McKee, Gregg S. B.; Vecchio, Kenneth

    2007-01-01

    Carbon nanotubes (CNTs) have been a subject of great interest partially due to their potential for exceptional material properties. Improvements in synthesis methods have facilitated the production of ultralong CNT mats, with lengths in the millimeter range. The increased length of these ultralong mats has, in return, opened the way to greater flexibility to probe their mechanical response. In this work, mats of dense, well-aligned, multiwalled carbon nanotubes were grown with a vapor-phase chemical vapor deposition technique using ferrocene and benzene as reactants, and subsequently tested in both tension and compression using two methods, in a thermomechanical analyzer and in situ inside a scanning electron microscope. In compression, measured stiffness was very low, due to buckling of the nanotubes. In tension, the nanotube mats behaved considerably stiffer; however, they were still more compliant than expected for nanotubes (˜1TPa). Analysis of both the growth method used and the nanotube mat fracture surface suggests that the mats grown in this method are not composed of continuous nanotubes and their strengths actually closely match those of woven nanotube yarns and ropes.

  12. Disruption of photoautotrophic intertidal mats by filamentous fungi.

    Science.gov (United States)

    Carreira, Cátia; Staal, Marc; Falkoski, Daniel; de Vries, Ronald P; Middelboe, Mathias; Brussaard, Corina P D

    2015-08-01

    Ring-like structures, 2.0-4.8 cm in diameter, observed in photosynthetic microbial mats on the Wadden Sea island Schiermonnikoog (the Netherlands) showed to be the result of the fungus Emericellopsis sp. degrading the photoautotrophic top layer of the mat. The mats were predominantly composed of cyanobacteria and diatoms, with large densities of bacteria and viruses both in the top photosynthetic layer and in the underlying sediment. The fungal attack cleared the photosynthetic layer; however, no significant effect of the fungal lysis on the bacterial and viral abundances could be detected. Fungal-mediated degradation of the major photoautotrophs could be reproduced by inoculation of non-infected mat with isolated Emericellopsis sp., and with an infected ring sector. Diatoms were the first re-colonizers followed closely by cyanobacteria that after about 5 days dominated the space. The study demonstrated that the fungus Emericellopsis sp. efficiently degraded a photoautotrophic microbial mat, with potential implications for mat community composition, spatial structure and productivity.

  13. High universality of matK primers for barcoding gymnosperms

    Institute of Scientific and Technical Information of China (English)

    Yan LI; Lian-Ming GAO; RAM C.POUDEL; De-Zhu Li; Alan FORREST

    2011-01-01

    DNA barcoding is a tool to provide rapid and accurate taxonomic identification using a standard DNA region. A two-marker combination of rnatK+rbcL was formally proposed as the core barcode for land plants by the Consortium for the Barcode of Life Plant Working Group. However, there are currently no barcoding primers for matK showing high universality in gymnosperms. We used 57 gymnosperm species representing 40 genera, 11families and four subclasses to evaluate the universality of nine candidate matK primers and one rbcL primer in this study. Primer (1F/724R) of rbcL is proposed here as a universal primer for gymnosperms due to high universality. One of the nine candidate matK primers (Gym_F1A/Gym_R1A) is proposed as the best "universal" matK primer for gynnosperms because of high polymerase chain reaction success and routine generation of high quality bidirectional sequences. A specific matK primer for Ephedra was newly designed in this study, which performed well on the sampled species. The primers proposed here for rbcL and matK can be easily and successfully amplified for most gymnosperms.

  14. Regulation of electron transfer processes affects phototrophic mat structure and activity

    Directory of Open Access Journals (Sweden)

    Haluk eBeyenal

    2015-09-01

    Full Text Available Phototrophic microbial mats are among the most diverse ecosystems in nature. These systems undergo daily cycles in redox potential caused by variations in light energy input and metabolic interactions among the microbial species. In this work, solid electrodes with controlled potentials were placed under mats to study the electron transfer processes between the electrode and the microbial mat. The phototrophic microbial mat was harvested from Hot Lake, a hypersaline, epsomitic lake located near Oroville (Washington, USA. We operated two reactors: graphite electrodes were polarized at potentials of -700 mVAg/AgCl (cathodic mat system and +300 mVAg/AgCl (anodic mat system and the electron transfer rates between the electrode and mat were monitored. We observed a diel cycle of electron transfer rates for both anodic and cathodic mat systems. Interestingly, the cathodic mats generated the highest reducing current at the same time points that the anodic mats showed the highest oxidizing current. To characterize the physicochemical factors influencing electron transfer processes, we measured depth profiles of dissolved oxygen and sulfide in the mats using microelectrodes. We further demonstrated that the mat-to-electrode and electrode-to-mat electron transfer rates were light- and temperature-dependent. Using nuclear magnetic resonance (NMR imaging, we determined that the electrode potential regulated the diffusivity and porosity of the microbial mats. Both porosity and diffusivity were higher in the cathodic mats than in the anodic mats. We also used NMR spectroscopy for high-resolution quantitative metabolite analysis and found that the cathodic mats had significantly higher concentrations of osmoprotectants such as betaine and trehalose. Subsequently, we performed amplicon sequencing across the V4 region of the 16S rRNA gene of incubated mats to understand the impact of electrode potential on microbial community structure. These data suggested that

  15. Mats Traat : eesti kirjanik on trumbid juba käest andnud / Mats Traat ; küsitles Urve Eslas

    Index Scriptorium Estoniae

    Traat, Mats, 1936-

    2007-01-01

    Selgusid Eesti Kultuurkapitali kirjanduse sihtkapitali aastapreemiate saajad. Intervjuu romaaniga "Naised ja pojad" proosapreemia võitnud Mats Traadiga. Esseistikapreemia pälvis Hasso Krulli "Loomise mõnu ja kiri"

  16. Photosynthetic Microbial Mats are Exemplary Sources of Diverse Biosignatures (Invited)

    Science.gov (United States)

    Des Marais, D. J.; Jahnke, L. L.

    2013-12-01

    Marine cyanobacterial microbial mats are widespread, compact, self-contained ecosystems that create diverse biosignatures and have an ancient fossil record. Within the mats, oxygenic photosynthesis provides organic substrates and O2 to the community. Both the absorption and scattering of light change the intensity and spectral composition of incident radiation as it penetrates a mat. Some phototrophs utilize infrared light near the base of the photic zone. A mat's upper layers can become highly reduced and sulfidic at night. Counteracting gradients of O2 and sulfide shape the chemical environment and provide daily-contrasting microenvironments separated on a scale of a few mm. Radiation hazards (UV, etc.), O2 and sulfide toxicity elicit motility and other physiological responses. This combination of benefits and hazards of light, O2 and sulfide promotes the allocation of various essential mat processes between light and dark periods and to various depths in the mat. Associated nonphotosynthetic communities, including anaerobes, strongly influence many of the ecosystem's overall characteristics, and their processes affect any biosignatures that enter the fossil record. A biosignature is an object, substance and/or pattern whose origin specifically requires a biological agent. The value of a biosignature depends not only on the probability of life creating it, but also on the improbability of nonbiological processes producing it. Microbial mats create biosignatures that identify particular groups of organisms and also reveal attributes of the mat ecosystem. For example, branched hydrocarbons and pigments can be diagnostic of cyanobacteria and other phototrophic bacteria, and isoprenoids can indicate particular groups of archea. Assemblages of lipid biosignatures change with depth due to changes in microbial populations and diagenetic transformations of organic matter. The 13C/12C values of organic matter and carbonates reflect isotopic discrimination by particular

  17. Two-step activation of meiosis by the mat1 locus in Schizosaccharomyces pombe

    DEFF Research Database (Denmark)

    Willer, M; Hoffmann, Ulla-Lisbeth; Styrkársdóttir, U

    1995-01-01

    The mat1 locus is a key regulator of both conjugation and meiosis in the fission yeast Schizosaccharomyces pombe. Two alternative DNA segments of this locus, mat1-P and mat1-M, specify the haploid cell types (Plus and Minus). Each segment includes two genes: mat1-P includes mat1-Pc and mat1-Pm......, while mat1-M includes mat1-Mc and mat1-Mm. The mat1-Pc and mat1-Mc genes are responsible for establishing the pheromone communication system that mediates conjugation between P and M cells, while all four mat1 genes are required for meiosis in diploid P/M cells. Our understanding of the initiation...... of meiosis is based largely on indirect observations, and a more precise investigation of these events was required to define the interaction between the mat1 genes. Here we resolve this issue using synthetic pheromones and P/M strains with mutations in either mat1-Pc or mat1-Mc. Our results suggest a model...

  18. Community Structure and Function of High-temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

    Directory of Open Access Journals (Sweden)

    William P. Inskeep

    2013-06-01

    Full Text Available Six phototrophic microbial mat communities from different geothermal springs (YNP were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average~ 53 Mbp/site were subjected to multiple taxonomic, phylogenetic and functional analyses. All methods, including G+C content distribution, MEGAN analyses and oligonucleotide frequency-based clustering, provided strong support for the dominant community members present in each site. Cyanobacteria were only observed in non-sulfidic sites; de novo assemblies were obtained for Synechococcus-like populations at Chocolate Pots (CP_7 and Fischerella-like populations at White Creek (WC_6. Chloroflexi-like sequences (esp. Roseiflexus and/or Chloroflexus spp. were observed in all six samples and contained genes involved in bacteriochlorophyll biosynthesis and the 3-hydroxypropionate carbon fixation pathway. Other major sequence assemblies were obtained for a Chlorobiales population from CP_7 (proposed family Thermochlorobacteriaceae, and an anoxygenic, sulfur-oxidizing Thermochromatium-like (Gamma-proteobacteria population from Bath Lake Vista Annex (BLVA_20. Additional sequence coverage is necessary to establish more complete assemblies of other novel bacteria in these sites (e.g., Bacteroidetes and Firmicutes; however, current assemblies suggested that several of these organisms play important roles in heterotrophic and fermentative metabolisms. Definitive linkages were established between several of the dominant phylotypes present in these habitats and important functional

  19. Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

    Science.gov (United States)

    Klatt, Christian G; Inskeep, William P; Herrgard, Markus J; Jay, Zackary J; Rusch, Douglas B; Tringe, Susannah G; Niki Parenteau, M; Ward, David M; Boomer, Sarah M; Bryant, Donald A; Miller, Scott R

    2013-01-01

    Six phototrophic microbial mat communities from different geothermal springs (YNP) were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average ∼53 Mbp/site) were subjected to multiple taxonomic, phylogenetic, and functional analyses. All methods, including G + C content distribution, MEGAN analyses, and oligonucleotide frequency-based clustering, provided strong support for the dominant community members present in each site. Cyanobacteria were only observed in non-sulfidic sites; de novo assemblies were obtained for Synechococcus-like populations at Chocolate Pots (CP_7) and Fischerella-like populations at White Creek (WC_6). Chloroflexi-like sequences (esp. Roseiflexus and/or Chloroflexus spp.) were observed in all six samples and contained genes involved in bacteriochlorophyll biosynthesis and the 3-hydroxypropionate carbon fixation pathway. Other major sequence assemblies were obtained for a Chlorobiales population from CP_7 (proposed family Thermochlorobacteriaceae), and an anoxygenic, sulfur-oxidizing Thermochromatium-like (Gamma-proteobacteria) population from Bath Lake Vista Annex (BLVA_20). Additional sequence coverage is necessary to establish more complete assemblies of other novel bacteria in these sites (e.g., Bacteroidetes and Firmicutes); however, current assemblies suggested that several of these organisms play important roles in heterotrophic and fermentative metabolisms. Definitive linkages were established between several of the dominant phylotypes present in these habitats and important functional

  20. Electrospun chitosan/polyvinyl alcohol nanofibre mats for wound healing.

    Science.gov (United States)

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Opanasopit, Praneet

    2014-04-01

    Chitosan (CS) aqueous salt blended with polyvinyl alcohol (PVA) nanofibre mats was prepared by electrospinning. CS was dissolved with hydroxybenzotriazole (HOBt), thiamine pyrophosphate (TPP) and ethylenediaminetetraacetic acid (EDTA) in distilled water without the use of toxic or hazardous solvents. The CS aqueous salts were blended with PVA at different weight ratios, and the effect of the solution ratios was investigated. The morphologies and mechanical and swelling properties of the generated fibres were analysed. Indirect cytotoxicity studies indicated that the CS/PVA nanofibre mats were non-toxic to normal human fibroblast cells. The CS-HOBt/PVA and CS-EDTA/PVA nanofibre mats demonstrated satisfactory antibacterial activity against both gram-positive and gram-negative bacteria, and an in vivo wound healing test showed that the CS-EDTA/PVA nanofibre mats performed better than gauze in decreasing acute wound size during the first week after tissue damage. In conclusion, the biodegradable, biocompatible and antibacterial CS-EDTA/PVA nanofibre mats have potential for use as wound dressing materials.

  1. Counting viruses and bacteria in photosynthetic microbial mats.

    Science.gov (United States)

    Carreira, Cátia; Staal, Marc; Middelboe, Mathias; Brussaard, Corina P D

    2015-03-01

    Viral abundances in benthic environments are the highest found in aquatic systems. Photosynthetic microbial mats represent benthic environments with high microbial activity and possibly high viral densities, yet viral abundances have not been examined in such systems. Existing extraction procedures typically used in benthic viral ecology were applied to the complex matrix of microbial mats but were found to inefficiently extract viruses. Here, we present a method for extraction and quantification of viruses from photosynthetic microbial mats using epifluorescence microscopy (EFM) and flow cytometry (FCM). A combination of EDTA addition, probe sonication, and enzyme treatment applied to a glutaraldehyde-fixed sample resulted in a substantially higher viral (5- to 33-fold) extraction efficiency and reduced background noise compared to previously published methods. Using this method, it was found that in general, intertidal photosynthetic microbial mats harbor very high viral abundances (2.8 × 10(10) ± 0.3 × 10(10) g(-1)) compared with benthic habitats (10(7) to 10(9) g(-1)). This procedure also showed 4.5- and 4-fold-increased efficacies of extraction of viruses and bacteria, respectively, from intertidal sediments, allowing a single method to be used for the microbial mat and underlying sediment.

  2. EPA Method 1682: Salmonella spp.

    Science.gov (United States)

    Method 1682 describes procedures for analysis of solid samples (biosolids) and may be adapted for assessment of water, liquid, particulate and aerosol samples contaminated with Salmonella spp. using culture and immunoassay.

  3. NANOFIBROUS MATS WITH BIRD'S NEST PATTERNS BY ELECTROSPINNING

    Institute of Scientific and Technical Information of China (English)

    Xiang-yu Ye; Xiao-jun Huang; Zhi-kang Xu

    2012-01-01

    Electrospun material with bio-inspired ordered architectures and patterns is very interesting,yet remains a challenge.We report here that nanofibrous mats with bird's nest patterned structures can be directly electrospun from chlorinated polypropylene solutions doped with an ionic liquid.The solution viscosity and the ionic liquid content are two dominant factors to influence the lopological morphology of the nanofibrous mats.The patterned structures can be further modulated by the collection time of electrospinning,the humidity of environment and the design of collector.We suggest the electrostatic repulsion between the residual charges of the mat surface and the upcoming nanofibers plays a key role in the formation of the bird's nest patterns.

  4. Storage of yerba maté in controlled atmosphere

    Directory of Open Access Journals (Sweden)

    Sarah Lemos Cogo Prestes

    2014-04-01

    Full Text Available The aim of this study was to evaluate the effect of controlled atmosphere in the change of color, chlorophyll degradation and phenolic compounds concentration in yerba maté thickly ground (“cancheada” and thinly milled (“socada”. Yerba maté samples from the towns of Arvorezinha (RS - Brazil and São Mateus do Sul (PR - Brazil were stored in four levels of oxygen (1, 3, 6 and 20.9kPa of O2 and four levels of carbon dioxide (0, 3, 6 and 18kPa of CO2 and then were analyzed, after nine months of storage. According to the results, the O2 partial pressure reduction decreased the loss of green coloration, kept a higher content of chlorophylls and of total phenolic compounds. In relation to the different levels of CO2, a response as remarkable as O2 was not observed. The yerba maté that was thickly ground (“cancheada” presented a better storage potential than the one thinly milled (“socada” in the storage with O2 and with CO2. The 1kPa of O2 condition kept the yerba maté greener and with a higher content of chlorophylls and of total phenolic compounds after nine months of storage. The CO2 partial pressure kept the yerba maté coloration greener and with a higher content of chlorophylls and of total phenolic compounds, regardless of the level used, in the maté from both cultivation areas.

  5. The Extracellular Matrix in Photosynthetic Mats: A Cyanobacterial Gingerbread House

    Science.gov (United States)

    Stuart, R.; Stannard, W.; Bebout, B.; Pett-Ridge, J.; Mayali, X.; Weber, P. K.; Lipton, M. S.; Lee, J.; Everroad, R. C.; Thelen, M.

    2014-12-01

    Hypersaline laminated cyanobacterial mats are excellent model systems for investigating photoautotrophic contributions to biogeochemical cycling on a millimeter scale. These self-sustaining ecosystems are characterized by steep physiochemical gradients that fluctuate dramatically on hour timescales, providing a dynamic environment to study microbial response. However, elucidating the distribution of energy from light absorption into biomass requires a complete understanding of the various constituents of the mat. Extracellular polymeric substances (EPS), which can be composed of proteins, polysaccharides, lipids and DNA are a major component of these mats and may function in the redistribution of nutrients and metabolites within the community. To test this notion, we established a model mat-building culture for comparison with the phylogenetically diverse natural mat communities. In these two systems we determined how proteins and glycans in the matrix changed as a function of light and tracked nutrient flow from the matrix. Using mass spectrometry metaproteomics analysis, we found homologous proteins in both field and culture extracellular matrix that point to cyanobacterial turnover of amino acids, inorganic nutrients, carbohydrates and nucleic acids from the EPS. Other abundant functions identified included oxidative stress response from both the cyanobacteria and heterotrophs and cyanobacterial structural proteins that may play a role in mat cohesion. Several degradative enzymes also varied in abundance in the EPS in response to light availability, suggesting active secretion. To further test cyanobacterial EPS turnover, we generated isotopically-labeled EPS and used NanoSIMS to trace uptake of this labeled EPS. Our findings suggest Cyanobacteria may facilitate nutrient transfer to other groups, as well as uptake of their own products through degradation of EPS components. This work provides evidence for the essential roles of EPS for storage, structural

  6. Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats.

    Science.gov (United States)

    Nielsen, Michael; Revsbech, Niels P; Kühl, Michael

    2015-01-01

    We used a novel amperometric microsensor for measuring hydrogen gas production and consumption at high spatio-temporal resolution in cyanobacterial biofilms and mats dominated by non-heterocystous filamentous cyanobacteria (Microcoleus chtonoplastes and Oscillatoria sp.). The new microsensor is based on the use of an organic electrolyte and a stable internal reference system and can be equipped with a chemical sulfide trap in the measuring tip; it exhibits very stable and sulfide-insensitive measuring signals and a high sensitivity (1.5-5 pA per μmol L(-1) H2). Hydrogen gas measurements were done in combination with microsensor measurements of scalar irradiance, O2, pH, and H2S and showed a pronounced H2 accumulation (of up to 8-10% H2 saturation) within the upper mm of cyanobacterial mats after onset of darkness and O2 depletion. The peak concentration of H2 increased with the irradiance level prior to darkening. After an initial build-up over the first 1-2 h in darkness, H2 was depleted over several hours due to efflux to the overlaying water, and due to biogeochemical processes in the uppermost oxic layers and the anoxic layers of the mats. Depletion could be prevented by addition of molybdate pointing to sulfate reduction as a major sink for H2. Immediately after onset of illumination, a short burst of presumably photo-produced H2 due to direct biophotolysis was observed in the illuminated but anoxic mat layers. As soon as O2 from photosynthesis started to accumulate, the H2 was consumed rapidly and production ceased. Our data give detailed insights into the microscale distribution and dynamics of H2 in cyanobacterial biofilms and mats, and further support that cyanobacterial H2 production can play a significant role in fueling anaerobic processes like e.g., sulfate reduction or anoxygenic photosynthesis in microbial mats.

  7. Molecular analysis of the genus Asparagus based on matK sequences and its application to identify A. racemosus, a medicinally phytoestrogenic species.

    Science.gov (United States)

    Boonsom, Teerawat; Waranuch, Neti; Ingkaninan, Kornkanok; Denduangboripant, Jessada; Sukrong, Suchada

    2012-07-01

    The plant Asparagus racemosus is one of the most widely used sources of phytoestrogens because of its high content of the steroidal saponins, shatavarins I-IV, in roots. The dry root of A. racemosus, known as "Rak-Sam-Sip" in Thai, is one of the most popular herbal medicines, used as an anti-inflammatory, an aphrodisiac and a galactagogue. Recently, the interest in plant-derived estrogens has increased tremendously, making A. racemosus particularly important and a possible target for fraudulent labeling. However, the identification of A. racemosus is generally difficult due to its similar morphology to other Asparagus spp. Thus, accurate authentication of A. racemosus is essential. In this study, 1557-bp nucleotide sequences of the maturase K (matK) gene of eight Asparagus taxa were analyzed. A phylogenetic relationship based on the matK gene was also constructed. Ten polymorphic sites of nucleotide substitutions were found within the matK sequences. A. racemosus showed different nucleotide substitutions to the other species. A polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the matK gene was developed to discriminate A. racemosus from others. Only the 650-bp PCR product from A. racemosus could be digested with BssKI into two fragments of 397 and 253-bp while the products of other species remained undigested. Ten commercially crude drugs were analyzed and revealed that eight samples were derived from A. racemosus while two samples of that were not. Thus, the PCR-RFLP analysis of matK gene was shown to be an effective method for authentication of the medicinally phytoestrogenic species, A. racemosus.

  8. MAT 300  Assignment 1: Bottling Company Case Study

    OpenAIRE

    Laynebaril

    2017-01-01

     MAT 300  Assignment 1: Bottling Company Case Study Click Link Below To Buy: http://hwcampus.com/shop/mat-300-assignment-1-bottling-company-case-study/   Due Week 10 and worth 140 points Imagine you are a manager at a major bottling company. Customers have begun to complain that the bottles of the brand of soda produced in your company contain less than the advertised sixteen (16) ounces of product. Your boss wants to solve the problem at hand and has asked you to investig...

  9. Flow of light energy in benthic photosynthetic microbial mats

    Energy Technology Data Exchange (ETDEWEB)

    Al-Najjar, Mohammad Ahmad A.

    2010-12-15

    The work in this thesis demonstrates the assessment of the energy budget inside microbial mat ecosystems, and the factors affecting light utilization efficiency. It presents the first balanced light energy budget for benthic microbial mat ecosystems, and shows how the budget and the spatial distribution of the local photosynthetic efficiencies within the euphotic zone depend on the absorbed irradiance (Jabs). The energy budget was dominated by heat dissipation on the expense of photosynthesis. The maximum efficiency of photosynthesis was at light limiting conditions When comparing three different marine benthic photosynthetic ecosystems (originated from Abu-Dhabi, Arctic, and Exmouth Gulf in Western Australia), differences in the efficiencies were calculated. The results demonstrated that the maximum efficiency depended on mat characteristics affecting light absorption and scattering; such as, photopigments ratio and distribution, and the structural organization of the photosynthetic organisms relative to other absorbing components of the ecosystem (i.e., EPS, mineral particles, detritus, etc.). The maximum efficiency decreased with increasing light penetration depth, and increased with increasing the accessory pigments (phycocyanin and fucoxanthin)/chlorophyll ratio. Spatial heterogeneity in photosynthetic efficiency, pigment distribution, as well as light acclimation in microbial mats originating from different geographical locations was investigated. We used a combined pigment imaging approach (variable chlorophyll fluorescence and hyperspectral imaging), and fingerprinting approach. For each mat, the photosynthetic activity was proportional to the local pigment concentration in the photic zone, but not for the deeper layers and between different mats. In each mat, yield of PSII and E1/2 (light acclimation) generally decreased in parallel with depth, but the gradients in both parameters varied greatly between samples. This mismatch between pigments concentration

  10. Evaluation of Parameters Affecting Horizontal Stability of Landing Mats

    Science.gov (United States)

    1976-09-01

    1974. A rmathematical 11aodel tio silluatet the buckling response oif thte tria’i to th;: hora /ttntal ltAds way, atso elp. 1 h reuls o th...NO. 19R-20-0 MAT XU19, 4-FT X 4*PT ZERO ECCENTRICITY WIT420T EJGH48F NOTE NUMBERS SL LINES .RE HORIZONTAL FORC~E (LEFT) AND HORIZONTAL MOVEMENT ,RIGH...connector bars 14- TEST NO. 19-20-0 MAT XM19, 4-FT X 4-FT WIDTH 20-FT, LENGTH 48-FT ZERO ECCENTRICITY S-NG NUMBERS BYLINES ARE HORIZONTAL FORCE (LEFT) AND

  11. Angiosperm phylogeny based on matK sequence information

    NARCIS (Netherlands)

    Hilu, K.W.; Borsch, T.; Müller, K.; Soltis, D.E.; Savolainen, V.; Chase, M.W.; Powell, M.; Alice, L.A.; Evans, R.; Sauquet, H.; Neinhuis, C.; Slotta, T.A.B.; Rohwer, J.G.; Campbell, C.; Chatrou, L.W.

    2003-01-01

    Plastid matK gene sequences for 374 genera representing all angiosperm orders and 12 genera of gymnosperms were analyzed using parsimony (MP) and Bayesian inference (BI) approaches. Traditionally, slowly evolving genomic regions have been preferred for deep-level phylogenetic inference in angiosperm

  12. Coastal Microbial Mat Diversity along a Natural Salinity Gradient

    NARCIS (Netherlands)

    Bolhuis, H.; Fillinger, L.; Stal, L.J.

    2013-01-01

    The North Sea coast of the Dutch barrier island of Schiermonnikoog is covered by microbial mats that initiate a succession of plant communities that eventually results in the development of a densely vegetated salt marsh. The North Sea beach has a natural elevation running from the low water mark to

  13. MultiMatTest, Version 1.0

    Energy Technology Data Exchange (ETDEWEB)

    2017-02-01

    MultiMatTest is a demonstration code to support a talk and paper titled A Comparative Study of Multi-material Data Structures for Computational Physics Applications. The application times basic operations for different representations of multi-material data structures.

  14. Denitrification and the denitrifier community in coastal microbial mats

    NARCIS (Netherlands)

    Fan, H.; Bolhuis, H.; Stal, L.J.

    2015-01-01

    Denitrification was measured in three structurally different coastal microbial mats by using the stable isotope technique. The composition of the denitrifying community was determined by analyzing the nitrite reductase (nirS and nirK) genes using clone libraries and the GeoChip. The highest potentia

  15. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat

    NARCIS (Netherlands)

    Fan, H.; Bolhuis, H.; Stal, L.J.

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tida

  16. Myocardial Cell Pattern on Piezoelectric Nanofiber Mats for Energy Harvesting

    Science.gov (United States)

    Liu, X.; Wang, X.; Zhao, H.; Du, Y.

    2014-11-01

    The paper presents in vitro contractile myocardial cell pattern on piezoelectric nanofiber mats with applications in energy harvesting. The cell-based energy harvester consists of myocardial cell sheet and a PDMS substrate with a PVDF nanofiber mat on. Experimentally, cultured on specifically distributed nanofiber mats, neonatal rat ventricular cardiomyocytes are characterized with the related morphology and contraction. Previously, we have come up with the concept of energy harvesting from heart beating using piezoelectric material. A bio-hybrid energy harvester combined living cardiomyocytes, PDMS polymer substrate and piezoelectric PVDF film with the electrical output of peak current 87.5nA and peak voltage 92.3mV. However, the thickness of the cardiomyocyte cultured on a two-dimensional substrate is much less than that of the piezoelectric film. The Micro Contact Printing (μCP) method used in cell pattern on the PDMS thin film has tough requirement for the film surface. As such, in this paper we fabricated nanofiber-constructed PDMS thin film to realize cell pattern due to PVDF nanofibers with better piezoelectricity and microstructures of nanofiber mats guiding cell distribution. Living cardiomyocytes patterned on those distributed piezoelectric nanofibers with the result of the same distribution as the nanofiber pattern.

  17. Social yoga mats: reinforcing synergy between physical and social activity

    DEFF Research Database (Denmark)

    Nagargoje, Arun; Sokoler, Tomas; Maybach, Karl

    2011-01-01

    This paper discusses our early research into the design space for digital technologies that extend the existing synergistic relationship between physical and social activity from fitness centers to the home. We focus on yoga activity for senior citizens and explore the concept of social yoga mats...

  18. Electrospinning of caseinates to create protective fibrous mats

    Science.gov (United States)

    Electrospinning is a nonthermal process that produces fibers on the micron- or nano-scale from a polymer solution. If produced by electrospinning of biopolymer solutions, fibrous mats may be created for protecting foods and allowing for the preservation and controlled release of bioactives for healt...

  19. The ecology of nitrogen fixation in cynobacterial mats

    NARCIS (Netherlands)

    Stal, L.J.; Severin, I.; Bolhuis, H.; Hallenbeck, P.C.

    2010-01-01

    All cyanobacterial mats that have been investigated have been proven to be diazotrophic, i.e., use atmospheric dinitrogen (N2) as the source of nitrogen. Many cyanobacteria possess the capacity to fix N2 and different species have evolved various ways to cope with the sensitivity of nitrogenase towa

  20. The ecology of nitrogen fixation in cyanobacterial mats

    NARCIS (Netherlands)

    Stal, L.J.; Severin, I.; Bolhuis, H.; Hallenbeck, P.C.

    2010-01-01

    All cyanobacterial mats that have been investigated have been proven to be diazotrophic, i.e., use atmospheric dinitrogen (N2) as the source of nitrogen. Many cyanobacteria possess the capacity to fix N2 and different species have evolved various ways to cope with the sensitivity of nitrogenase towa

  1. The Varian MAT-250 mass spectrometer. Steady isotopes laboratory; Espectrometro de masas Varian MAT-250. Laboratorio de isotopos estables

    Energy Technology Data Exchange (ETDEWEB)

    Hernandez M, V.; Tavera D, M.L. [Instituto Nacional de Investigaciones Nucleares, A.P. 18-1027, 11801 Mexico D.F. (Mexico)

    1997-07-01

    This work treats over the performance and applications of the Varian Mat-250 mass spectrometer which is in the environmental isotope laboratory. It can be applied over topics such as: ions formation, acceleration and collimation, ions separation, ions detection, data transformation, sampling, {delta} notation. (Author)

  2. The Effects of Low Sulfate Concentrations on Modern Microbial Mat Communities: A Long Term Manipulation

    Science.gov (United States)

    Bebout, Brad; Carpenter, Steve; DesMarais, David J.; Discipulo, Mykell; Hogan, Mary; Turk, Kendra

    2002-01-01

    Microbial mats were widespread during the first ca. 2 Ga. of our biosphere's history. To better understand microbial ecosystems and their biomarkers under the low sulfate levels present in early oceans, we attempted a long-term (ca. 1 year) manipulation of sulfate in modem mats. Mats collected from salt ponds at Guerrero Negro, Baja Calif. Sur were incubated in a Greenhouse "Collaboratory" at Ames. Mats were maintained in artificial seawater brine containing either: 1) sulfate levels normal for these mats (70 mM), or 2) brine in which sulfate was replaced by chloride. Sulfate concentrations in the "low sulfate" brine gradually approached their lowest (to date) value of 0. 1 mM as sulfate was consumed and/or diffused out of the mat over a period of ca. 4 months. During that period of time, a number of differences between the treatments emerged. Relative to the "low sulfate" mats, "normal sulfate" mats had: 1) lower consumption of oxygen in the lower levels of the mat, 2) higher efficiencies of oxygenic photosynthesis, and 3) higher rates of nitrogen fixation. Rates of methane production by the mats increased greatly as sulfate concentrations fell below ca. 0.2 mM. In contrast, "low" and "normal" sulfate mats had similar net rates of exchange of O2 and dissolved inorganic C between the mats and overlying water. Reduced sulfate levels have diverse impacts upon these ecosystems.

  3. Preparation of PVA/ H3PW12O40 Fiber Mats

    Institute of Scientific and Technical Information of China (English)

    Jian GONG; Chang Lu SHAO; Guo Cheng YANG; Yan PAN; Lun Yu QU

    2004-01-01

    Poly(vinyl alcohol) (PVA) fiber mats containing 20 and 80 wt% H3PW12O40 were prepared by using electrospinning technique. The fiber mats were characterized by IR, XRD spectra and scanning electron microscope (SEM). The diameter of the fiber mats is ca. 400 nm.

  4. Aspects of the ecology of mat-forming lichens

    Directory of Open Access Journals (Sweden)

    P. D. Crittenden

    2000-03-01

    Full Text Available Lichen species in the genera Cladonia (subgenus Cladina, Cetraria, Stereocaulon and Alectoria are important vegetation components on well-drained terrain and on elevated micro-sites in peatlands in boreal-Arctic regions. These lichens often form closed mats, the component thalli in which grow vertically upwards at the apices and die off in the older basal regions; they are therefore only loosely attached to the underlying soil. This growth habit is relatively unusual in lichens being found in <0.5% of known species. It might facilitate internal nutrienr recycling and higher growth rates and, together with the production of allelochemicals, it might underlie the considerable ecological success of mat-forming lichens; experiments to critically assess the importance of these processes are required. Mat-forming lichens can constitute in excess of 60% of the winter food intake of caribou and reindeer. Accordingly there is a pressing need for data on lichen growth rates, measured as mass increment, in order to help determine the carrying capacity of winter ranges for rhese herbivores and to better predict recovery rates following grazing. Trampling during the snow-free season fragments lichen thalli; mat-forming lichens regenerate very successfully from thallus fragments provided trampling does nor re-occur. Frequent recurrence of trampling creates disturbed habitats from which lichens will rapidly become eliminated consistent with J.P. Grime's CSR strategy theory. Such damage to lichen ground cover has occurred where reindeer or caribou are unable to migrate away from their winter range such as on small islands or where political boundaries have been fenced; it can also occur on summer range that contains a significant lichen component and on winter range where numbers of migrarory animals become excessive. Species of Stereocaulon, and other genera that contain cyanobacteria (most notably Peltigera and Nephroma, are among the principal agents of

  5. Associação entre isoenzimas e matéria seca em batata silvestre Isoenzymes and dry matter content in wild potato

    Directory of Open Access Journals (Sweden)

    BEATRIZ HELENA GOMES ROCHA

    2000-12-01

    Full Text Available Clones de batata silvestre (Solanum spp. foram analisados quanto aos teores de matéria seca em tubérculos e isoenzimas de aspartato transaminase e isocitrato desidrogenase em folhas, com o objetivo de identificar associação entre estas características. Os resultados obtidos em uma amostra de 50 clones indicam grande variabilidade do teor de matéria seca. Clones de S. commersonii malmeanum apresentaram maior teor que os de S. commersonii commersonii, S. chacoense muelleri e de outros cuja espécie não foi identificada. Os padrões isoenzimáticos de folhas de 38 clones da amostra mostraram 15 variantes eletroforéticas de aspartato transaminase e sete de isocitrato desidrogenase. Comparações efetuadas através de tabelas de contingência 2 x 2, usando o teste de chi², com correção para continuidade, permitiram concluir que existe associação significativa entre o teor de matéria seca e as bandas de mobilidade relativa 1,00 de aspartato transaminase e de isocitrato desidrogenase.Wild potato clones (Solanum spp. were analysed for tuber dry matter content, leaf aspartate transaminase and leaf isocitrate dehydrogenase isoenzymes in order to identify association between these characteristics. The results indicate that there is great variability for dry matter content among 50 clones analysed. S. commersonii malmeanum clones had higher dry matter levels than S. commersonii commersonii, S. chacoense muelleri and the clones whose species were not identified. Fifteen aspartate transaminase and seven isocitrate dehydrogenase bands were observed in the gels of 38 clones. Tests of chi², using 2 x 2 contingency table, revealed a significant association between dry matter content and the bands of relative mobility 1.00 of both aspartate transaminase and isocitrate dehydrogenase isoenzymes.

  6. Radon and thoron anomalies along Mat fault in Mizoram, India

    Indian Academy of Sciences (India)

    Hari Prasad Jaishi; Sanjay Singh; Raghavendra Prasad Tiwari; Ramesh Chandra Tiwari

    2013-12-01

    In this study, radon and thoron concentrations in soil gas has been monitored using LR-115(II) solid state nuclear track detectors since 15th July 2011 to February 2012. The study was carried out along Mat fault in Serchip district, Mizoram, India at two different sites – Mat Bridge (23°18′N, 92° 48′E) and Tuichang (23° 13′N, 92° 56′E). The results obtained have been correlated to the seismic events that occurred within 800km from the measuring sites over the mentioned period of time. Anomalous behaviour in radon concentrations have been observed prior to some earthquakes. Interestingly, some thoron anomalies were also recorded.

  7. Projet ATI : Halle des matériaux

    OpenAIRE

    Babin, Matthieu; Busom Descarrega, Josep; Frisk, Nikolina; Haye, Pierre; Raymond Llorens, Santiago; Thaller, Maxime

    2014-01-01

    Le Projet halle des matériaux est un projet qui a été créé cette année spécialement pour mettre en place une procédure qualité au sein de celle-ci dans le but in fine de mettre aux normes la machine de Traction MTS 10/M ainsi que la machine de Dureté REICHERTER 250 UV. La mise aux normes attendue par les encadrants est, en fait, la création d'un dossier qualité regroupement les documents nécessaires à l'obtention de l'accréditation. Dans le cas de la Halle des Matériaux, nous pouvions vise...

  8. Electrospun Thermoplastic Polyurethane Mats Containing Naproxen– Cyclodextrin Inclusion Complex

    Directory of Open Access Journals (Sweden)

    Akduman Çiğdem

    2014-12-01

    Full Text Available Incorporation of cyclodextrins (CDs into electrospun nanofibrous materials can be considered as potential candidates for functional medical textile applications. Naproxen (NAP is a type of non-steroidal anti-inflammatory drug commonly administered for the treatment of pain, inflammation and fever. Drug-inclusion complex formation with CDs is an approach to improve the aqueous solubility via molecular encapsulation of the drug within the cavity of the more soluble CD molecule. In this study, NAP or different NAP-CD inclusion complexes loaded nanofibres were successfully produced through electrospinning and characterised. The inclusion complex loaded mats exhibited significantly faster release profiles than NAP-loaded thermoplastic polyurethane (TPU mats. Overall, NAP-inclusion complex loaded TPU electrospun nanofibres could be used as drug delivery systems for acute pain treatments since they possess a highly porous structure that can release the drug immediately.

  9. Mechanisms of mindfulness training: Monitor and Acceptance Theory (MAT).

    Science.gov (United States)

    Lindsay, Emily K; Creswell, J David

    2017-02-01

    Despite evidence linking trait mindfulness and mindfulness training with a broad range of effects, still little is known about its underlying active mechanisms. Mindfulness is commonly defined as (1) the ongoing monitoring of present-moment experience (2) with an orientation of acceptance. Building on conceptual, clinical, and empirical work, we describe a testable theoretical account to help explain mindfulness effects on cognition, affect, stress, and health outcomes. Specifically, Monitor and Acceptance Theory (MAT) posits that (1), by enhancing awareness of one's experiences, the skill of attention monitoring explains how mindfulness improves cognitive functioning outcomes, yet this same skill can increase affective reactivity. Second (2), by modifying one's relation to monitored experience, acceptance is necessary for reducing affective reactivity, such that attention monitoring and acceptance skills together explain how mindfulness improves negative affectivity, stress, and stress-related health outcomes. We discuss how MAT contributes to mindfulness science, suggest plausible alternatives to the account, and offer specific predictions for future research.

  10. Trimap generation for digital matting using camera exposure

    Institute of Scientific and Technical Information of China (English)

    WANG Lu; OUYANG Binlin; LI Chengrong

    2007-01-01

    This paper proposed a method to automatically generate the trimap for digital matting. Camera parameters of aperture and shutter speed are used to control its exposure, and accordingly to take pictures of stationary foreground with blurred background. Our method was inspired by color difference matting, both of which require a pre-record background image. In our method, only one image was required. Upon this input image, the process of blurring-deblurring, subtraction, thresholding and dilation were applied to finally generate the trimap. No user's direct interface with the image was needed, and the user only needed to adjust the threshold or width of dilation for some input images. It reduces users' conservative interaction, and results are reliable for most of the pictures.

  11. Electrospun mats from styrene/maleic anhydride copolymers: modification with amines and assessment of antimicrobial activity.

    Science.gov (United States)

    Ignatova, Milena; Stoilova, Olya; Manolova, Nevena; Markova, Nadya; Rashkov, Iliya

    2010-08-11

    New antimicrobial microfibrous electrospun mats from styrene/maleic anhydride copolymers were prepared. Two approaches were applied: (i) grafting of poly(propylene glycol) monoamine (Jeffamine® M-600) on the mats followed by formation of complex with iodine; (ii) modification of the mats with amines of 8-hydroxyquinoline or biguanide type with antimicrobial activity. Microbiological screening against S. aureus, E. coli and C. albicans revealed that both the formation of complex with iodine and the covalent attachment of 5-amino-8-hydroxyquinoline or of chlorhexidine impart high antimicrobial activity to the mats. In addition, S. aureus bacteria did not adhere to modified mats.

  12. Mineralogy of iron microbial mats from Loihi Seamount

    Directory of Open Access Journals (Sweden)

    Brandy Marie Toner

    2012-04-01

    Full Text Available Extensive mats of Fe oxyhydroxides and associated Fe-oxidizing microbial organisms form in diverse geochemical settings – freshwater seeps to deep-sea vents – where ever opposing Fe(II-oxygen gradients prevail. The mineralogy, reactivity, and structural transformations of Fe oxyhydroxides precipitated from submarine hydrothermal fluids within microbial mats remains elusive in active and fossil systems. In response, a study of Fe microbial mat formation at the Loihi Seamount was conducted to describe the physical and chemical characteristics of Fe-phases using extended X-ray absorption fine structure spectroscopy, powder X-ray diffraction, synchrotron radiation X-ray total scattering, low-temperature magnetic measurements, and Mössbauer spectroscopy. Particle sizes of 3.5-4.6 nm were estimated from magnetism data, and coherent scattering domain sizes as small as 1.6 nm are indicated by pair distribution function (PDF analysis. Disorder in the nanostructured Fe-bearing phases results in limited intermediate-range structural order: less than that of standard 2-line ferrihydrite (Fh, except for the Pohaku site. The short-range ordered natural Fh (FhSRO phases were stable at 4 °C in the presence of oxygen for at least 1 year and during 400 oC treatment. The observed stability of the FhSRO is consistent with magnetic observations that point to non-interacting nanoparticles. PDF analyses of total scattering data provide further evidence for FhSRO particles with a poorly ordered silica coating. The presence of coated particles explains the small coherent scattering domain for the mat minerals, as well as the stability of the minerals over time and against heating. The mineral properties observed here provide a starting point from which progressively older and more extensively altered iron deposits may be examined, with the ultimate goal of improved interpretation of past biogeochemical conditions and diagenetic processes.

  13. Simulated Carbon Cycling in a Model Microbial Mat.

    Science.gov (United States)

    Decker, K. L.; Potter, C. S.

    2006-12-01

    We present here the novel addition of detailed organic carbon cycling to our model of a hypersaline microbial mat ecosystem. This ecosystem model, MBGC (Microbial BioGeoChemistry), simulates carbon fixation through oxygenic and anoxygenic photosynthesis, and the release of C and electrons for microbial heterotrophs via cyanobacterial exudates and also via a pool of dead cells. Previously in MBGC, the organic portion of the carbon cycle was simplified into a black-box rate of accumulation of simple and complex organic compounds based on photosynthesis and mortality rates. We will discuss the novel inclusion of fermentation as a source of carbon and electrons for use in methanogenesis and sulfate reduction, and the influence of photorespiration on labile carbon exudation rates in cyanobacteria. We will also discuss the modeling of decomposition of dead cells and the ultimate release of inorganic carbon. The detailed modeling of organic carbon cycling is important to the accurate representation of inorganic carbon flux through the mat, as well as to accurate representation of growth models of the heterotrophs under different environmental conditions. Because the model ecosystem is an analog of ancient microbial mats that had huge impacts on the atmosphere of early earth, this MBGC can be useful as a biological component to either early earth models or models of other planets that potentially harbor life.

  14. Hydroponic root mats for wastewater treatment-a review.

    Science.gov (United States)

    Chen, Zhongbing; Cuervo, Diego Paredes; Müller, Jochen A; Wiessner, Arndt; Köser, Heinz; Vymazal, Jan; Kästner, Matthias; Kuschk, Peter

    2016-08-01

    Hydroponic root mats (HRMs) are ecotechnological wastewater treatment systems where aquatic vegetation forms buoyant filters by their dense interwoven roots and rhizomes, sometimes supported by rafts or other floating materials. A preferential hydraulic flow is created in the water zone between the plant root mat and the bottom of the treatment system. When the mat touches the bottom of the water body, such systems can also function as HRM filter; i.e. the hydraulic flow passes directly through the root zone. HRMs have been used for the treatment of various types of polluted water, including domestic wastewater; agricultural effluents; and polluted river, lake, stormwater and groundwater and even acid mine drainage. This article provides an overview on the concept of applying floating HRM and non-floating HRM filters for wastewater treatment. Exemplary performance data are presented, and the advantages and disadvantages of this technology are discussed in comparison to those of ponds, free-floating plant and soil-based constructed wetlands. Finally, suggestions are provided on the preferred scope of application of HRMs.

  15. Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat

    Science.gov (United States)

    Canfield, Donald E.; Des Marais, David J.

    1993-01-01

    Complete budgets for carbon and oxygen have been constructed for cyanobacterial mats dominated by Microcoleus chthonoplastes from the evaporating ponds of a salt works. We infer from the data the various sinks for O2 as well as the sources of carbon for primary production. Although seasonal variability exists, a major percentage of the O2 produced during the day did not diffuse out of the mat but was used within the mat to oxidize both organic carbon and the sulfide produced by sulfate reduction. At night, most of the O2 that diffused into the mat was used to oxidize sulfide, with O2 respiration of minor importance. During the day, the internal mat processes of sulfate reduction and O2 respiration generated as much or more inorganic carbon (DIC) for primary production as diffusion into the mat. Oxygenic photosynthesis was the most important process of carbon fixation. At night, the DIC lost from the mat was mostly from sulfate reduction. Elemental fluxes across the mat/brine interface indicated that carbon with an oxidation state of greater than zero was taken up by the mat during the day and liberated from the mat at night. Overall, carbon with an average oxidation state of near zero accumulated in the mat. Both carbon fixation and carbon oxidation rates varied with temperature by a similar amount.

  16. [Cryptosporidium spp. and Giardia spp.--environmental studies in Poland].

    Science.gov (United States)

    Bajer, Anna; Bednarska, Małgorzata; Siński, Edward

    2009-01-01

    Cryptosporidium spp. and Giardia spp. are intestinal protozoan parasites of humans and many other species of mammals. The aim of this article was to summarize the last twenty years of research on the environmental distribution of these parasites, with a particular emphasis on the natural reservoir of invasion and human infections in Poland. The prevalence of Cryptosporidium and Giardia has been studied in different groups of humans, in wildlife, pets and farm animals and in environmental samples. Current knowledge on the distribution of zoonotic and non-zoonotic species/genotypes in reservoir hosts and environmental samples has been summarized. The usefulness of different methods for the detection and identification of the parasites in different types of samples has been presented. Due to the wide distribution and high prevalence of both species in a range of hosts and possible vectors involved in mechanical transmission, the overall risk of outbreaks of cryptosporidiosis and giardiosis in Poland has been assessed as relatively high.

  17. Antimicrobial activity of electrospun poly(butylenes succinate) fiber mats containing PVP-capped silver nanoparticles.

    Science.gov (United States)

    Tian, Ligang; Wang, Pingli; Zhao, Zhiguo; Ji, Junhui

    2013-12-01

    In this study, biodegradable poly(butylenes succinate) (PBS) fiber mats containing silver nanoparticles (AgNPs) were prepared by the electrospinning process. Small AgNPs (fiber mats and the distribution of the AgNPs were well characterized by TEM and SEM. The release of Ag from the PBS fiber mats was quantitively determined by ICP. The PBS fiber mats with 0.29 % AgNPs content showed strong antimicrobial activity against both gram-positive Staphylococcus aureus and gram-negative Escherichia coli with the efficacy as high as 99 %. The effective bactericidal activity on E. coli was demonstrated for a short contacting time with the PBS-AgNPs fiber mats. In addition, the long-term release performance of Ag from the fiber mats can keep inhibiting the bacterial growth in the mats over a long period of time.

  18. Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geological record.

    Science.gov (United States)

    van der Meer, M T; Schouten, S; de Leeuw, J W; Ward, D M

    2000-08-01

    Inferences about the evidence of life recorded in organic compounds within the Earth's ancient rocks have depended on 13C contents low enough to be characteristic of biological debris produced by the well-known CO2 fixation pathway, the Calvin cycle. 'Atypically' high values have been attributed to isotopic alteration of sedimentary organic carbon by thermal metamorphism. We examined the possibility that organic carbon characterized by a relatively high 13C content could have arisen biologically from recently discovered autotrophic pathways. We focused on the green non-sulphur bacterium Chloroflexus aurantiacus that uses the 3-hydroxypropionate pathway for inorganic carbon fixation and is geologically significant as it forms modern mat communities analogous to stromatolites. Organic matter in mats constructed by Chloroflexus spp. alone had relatively high 13C contents (-14.9%) and lipids diagnostic of Chloroflexus that were also isotopically heavy (-8.9% to -18.5%). Organic matter in mats constructed by Chloroflexus in conjunction with cyanobacteria had a more typical Calvin cycle signature (-23.5%). However, lipids diagnostic of Chloroflexus were isotopically enriched (-15.1% to -24.1%) relative to lipids typical of cyanobacteria (-33.9% to -36.3%). This suggests that, in mats formed by both cyanobacteria and Chloroflexus, autotrophy must have a greater effect on Chloroflexus carbon metabolism than the photoheterotrophic consumption of cyanobacterial photosynthate. Chloroflexus cell components were also selectively preserved. Hence, Chloroflexus autotrophy and selective preservation of its products constitute one purely biological mechanism by which isotopically heavy organic carbon could have been introduced into important Precambrian geological features.

  19. Studying Microbial Mat Functioning Amidst "Unexpected Diversity": Methodological Approaches and Initial Results from Metatranscriptomes of Mats Over Diel cycles, iTags from Long Term Manipulations, and Biogeochemical Cycling in Simplified Microbial Mats Constructed from Cultures

    Science.gov (United States)

    Bebout, B.; Bebout, L. E.; Detweiler, A. M.; Everroad, R. C.; Lee, J.; Pett-Ridge, J.; Weber, P. K.

    2014-12-01

    Microbial mats are famously amongst the most diverse microbial ecosystems on Earth, inhabiting some of the most inclement environments known, including hypersaline, dry, hot, cold, nutrient poor, and high UV environments. The high microbial diversity of microbial mats makes studies of microbial ecology notably difficult. To address this challenge, we have been using a combination of metagenomics, metatranscriptomics, iTags and culture-based simplified microbial mats to study biogeochemical cycling (H2 production, N2 fixation, and fermentation) in microbial mats collected from Elkhorn Slough, Monterey Bay, California. Metatranscriptomes of microbial mats incubated over a diel cycle have revealed that a number of gene systems activate only during the day in Cyanobacteria, while the remaining appear to be constitutive. The dominant cyanobacterium in the mat (Microcoleus chthonoplastes) expresses several pathways for nitrogen scavenging undocumented in cultured strains, as well as the expression of two starch storage and utilization cycles. Community composition shifts in response to long term manipulations of mats were assessed using iTags. Changes in community diversity were observed as hydrogen fluxes increased in response to a lowering of sulfate concentrations. To produce simplified microbial mats, we have isolated members of 13 of the 15 top taxa from our iTag libraries into culture. Simplified microbial mats and simple co-cultures and consortia constructed from these isolates reproduce many of the natural patterns of biogeochemical cycling in the parent natural microbial mats, but against a background of far lower overall diversity, simplifying studies of changes in gene expression (over the short term), interactions between community members, and community composition changes (over the longer term), in response to environmental forcing.

  20. Genetic engineering of Geobacillus spp.

    Science.gov (United States)

    Kananavičiūtė, Rūta; Čitavičius, Donaldas

    2015-04-01

    Members of the genus Geobacillus are thermophiles that are of great biotechnological importance, since they are sources of many thermostable enzymes. Because of their metabolic versatility, geobacilli can be used as whole-cell catalysts in processes such as bioconversion and bioremediation. The effective employment of Geobacillus spp. requires the development of reliable methods for genetic engineering of these bacteria. Currently, genetic manipulation tools and protocols are under rapid development. However, there are several convenient cloning vectors, some of which replicate autonomously, while others are suitable for the genetic modification of chromosomal genes. Gene expression systems are also intensively studied. Combining these tools together with proper techniques for DNA transfer, some Geobacillus strains were shown to be valuable producers of recombinant proteins and industrially important biochemicals, such as ethanol or isobutanol. This review encompasses the progress made in the genetic engineering of Geobacillus spp. and surveys the vectors and transformation methods that are available for this genus.

  1. BOTH MAT1-1 AND MAT1-2 MATING TYPES OF MYCOSPHAERELLA GRAMINICOLA OCCUR AT EQUAL FREQUENCIES IN ALGERIA.

    Science.gov (United States)

    Allioui, N; Siah, A; Brinis, L; Reignault, Ph; Halama, P

    2014-01-01

    Septoria tritici blotch caused by Mycosphaerella graminicola is currently the most devastating disease on wheat crops worldwide. Mycosphaerella graminicola sexual reproduction involves two mating type idiomorphs that were previously studied in several areas around the world, but not in Algeria so far. The objective of this study was thus to determine the frequencies and distribution of M. graminicola mating types in this country. One hundred and twenty monoconidial isolates of this fungus (60 from bread wheat and 60 from durum wheat) were collected during the 2012 growing season from five distinct geographical locations in Algeria. The mating type of each isolate was identified using a multiplex PCR that amplifies either MAT1-1 or MAT1-2 fragment from mating type loci. Both idiomorphs were found at equal frequencies according to the chi-square test at the whole country level (46% MAT1-1 and 54% MAT1-2) and in each of the sampled locations. The two mating types were also detected at equal frequencies on both host species (47% MAT1-1 vs 53% MAT1-2 on bread wheat and 45% MAT1-1 vs 55% MAT1-2 on durum wheat). Our study showed that the two mating types of M. graminicola occur at equal proportions in Algeria and suggests a strong potential for sexual reproduction of the pathogen in this country that may eventually lead to either adaptation to local conditions, plant resistance overcoming or the emergence of resistance to fungicides.

  2. Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park.

    Science.gov (United States)

    Ross, Kimberly A; Feazel, Leah M; Robertson, Charles E; Fathepure, Babu Z; Wright, Katherine E; Turk-Macleod, Rebecca M; Chan, Mallory M; Held, Nicole L; Spear, John R; Pace, Norman R

    2012-07-01

    The mesothermal outflow zones (50-65°C) of geothermal springs often support an extensive zone of green and orange laminated microbial mats. In order to identify and compare the microbial inhabitants of morphologically similar green-orange mats from chemically and geographically distinct springs, we generated and analyzed small-subunit ribosomal RNA (rRNA) gene amplicons from six mesothermal mats (four previously unexamined) in Yellowstone National Park. Between three and six bacterial phyla dominated each mat. While many sequences bear the highest identity to previously isolated phototrophic genera belonging to the Cyanobacteria, Chloroflexi, and Chlorobi phyla, there is also frequent representation of uncultured, unclassified members of these groups. Some genus-level representatives of these dominant phyla were found in all mats, while others were unique to a single mat. Other groups detected at high frequencies include candidate divisions (such as the OP candidate clades) with no cultured representatives or complete genomes available. In addition, rRNA genes related to the recently isolated and characterized photosynthetic acidobacterium "Candidatus Chloracidobacterium thermophilum" were detected in most mats. In contrast to microbial mats from well-studied hypersaline environments, the mesothermal mats in this study accrue less biomass and are substantially less diverse, but have a higher proportion of known phototrophic organisms. This study provides sequences appropriate for accurate phylogenetic classification and expands the molecular phylogenetic survey of Yellowstone microbial mats.

  3. Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat

    Science.gov (United States)

    Canfield, Donald E.; Des Marais, David J.

    1993-08-01

    Complete budgets for carbon and oxygen have been constructed for cyanobacterial mats dominated by Microcoleus chthonoplastes from the evaporating ponds of a salt works located in Guerrero Negro, Baja California Sur, Mexico. Included in the budget are measured rates of O 2 production, sulfate reduction, and elemental exchange across the mat/brine interface, day and night, at various temperatures and times of the year. We infer from this data the various sinks for O 2, as well as the sources of carbon for primary production. To summarize, although seasonal variability exists, a major percentage of the O 2 produced during the day did not diffuse out of the mat but was used within the mat to oxidize both organic carbon and the sulfide produced by sulfate reduction. At night, most of the O 2 that diffused into the mat was used to oxidize sulfide, with O 2 respiration of minor importance. During the day, the internal mat processes of sulfate reduction and O 2 respiration generated as much or more inorganic carbon (DIC) for primary production as diffusion into the mat. Also, oxygenic photosynthesis was the most important process of carbon fixation, although anoxygenic photosynthesis may have been important at low light levels during some times of the year. At night, the DIC lost from the mat was mostly from sulfate reduction. Elemental fluxes across the mat/brine interface indicated that carbon with an oxidation state of greater than zero was taken up by the mat during the day and liberated from the mat at night. Overall, carbon with an average oxidation state of near zero accumulated in the mat. Both carbon fixation and carbon oxidation rates varied with temperature by a similar amount. These mats are thus closely coupled systems where rapid rates of photosynthesis both require and fuel rapid rates of heterotrophic carbon oxidation.

  4. Rigid Polyurethane Foam Thermal Insulation Protected with Mineral Intumescent Mat

    Directory of Open Access Journals (Sweden)

    Kirpluks Mikelis

    2014-12-01

    Full Text Available One of the biggest disadvantages of rigid polyurethane (PU foams is its low thermal resistance, high flammability and high smoke production. Greatest advantage of this thermal insulation material is its low thermal conductivity (λ, which at 18-28 mW/(m•K is superior to other materials. To lower the flammability of PU foams, different flame retardants (FR are used. Usually, industrially viable are halogenated liquid FRs but recent trends in EU regulations show that they are not desirable any more. Main concern is toxicity of smoke and health hazard form volatiles in PU foam materials. Development of intumescent passive fire protection for foam materials would answer problems with flammability without using halogenated FRs. It is possible to add expandable graphite (EG into PU foam structure but this increases the thermal conductivity greatly. Thus, the main advantage of PU foam is lost. To decrease the flammability of PU foams, three different contents 3%; 9% and 15% of EG were added to PU foam formulation. Sample with 15% of EG increased λ of PU foam from 24.0 to 30.0 mW/(m•K. This paper describes the study where PU foam developed from renewable resources is protected with thermally expandable intumescent mat from Technical Fibre Products Ltd. (TFP as an alternative to EG added into PU material. TFP produces range of mineral fibre mats with EG that produce passive fire barrier. Two type mats were used to develop sandwich-type PU foams. Also, synergy effect of non-halogenated FR, dimethyl propyl phosphate and EG was studied. Flammability of developed materials was assessed using Cone Calorimeter equipment. Density, thermal conductivity, compression strength and modulus of elasticity were tested for developed PU foams. PU foam morphology was assessed from scanning electron microscopy images.

  5. Diel Metagenomics and Metatranscriptomics of Elkhorn Slough Hypersaline Microbial Mat

    Science.gov (United States)

    Lee, J.; Detweiler, A. M.; Everroad, R. C.; Bebout, L. E.; Weber, P. K.; Pett-Ridge, J.; Bebout, B.

    2014-12-01

    To understand the variation in gene expression associated with the daytime oxygenic phototrophic and nighttime fermentation regimes seen in hypersaline microbial mats, a contiguous mat piece was subjected to sampling at regular intervals over a 24-hour diel period. Additionally, to understand the impact of sulfate reduction on biohydrogen consumption, molybdate was added to a parallel experiment in the same run. 4 metagenome and 12 metatranscriptome Illumina HiSeq lanes were completed over day / night, and control / molybdate experiments. Preliminary comparative examination of noon and midnight metatranscriptomic samples mapped using bowtie2 to reference genomes has revealed several notable results about the dominant mat-building cyanobacterium Microcoleus chthonoplastes PCC 7420. Dominant cyanobacterium M. chthonoplastes PCC 7420 shows expression in several pathways for nitrogen scavenging, including nitrogen fixation. Reads mapped to M. chthonoplastes PCC 7420 shows expression of two starch storage and utilization pathways, one as a starch-trehalose-maltose-glucose pathway, another through UDP-glucose-cellulose-β-1,4 glucan-glucose pathway. The overall trend of gene expression was primarily light driven up-regulation followed by down-regulation in dark, while much of the remaining expression profile appears to be constitutive. Co-assembly of quality-controlled reads from 4 metagenomes was performed using Ray Meta with progressively smaller K-mer sizes, with bins identified and filtered using principal component analysis of coverages from all libraries and a %GC filter, followed by reassembly of the remaining co-assembly reads and binned reads. Despite having relatively similar abundance profiles in each metagenome, this binning approach was able to distinctly resolve bins from dominant taxa, but also sulfate reducing bacteria that are desired for understanding molybdate inhibition. Bins generated from this iterative assembly process will be used for downstream

  6. Detection of Leptospira spp. and Brucella abortus antibodies in free-living jaguars (Panthera onca) in two protected areas of northern Pantanal, Brazil.

    Science.gov (United States)

    Onuma, Selma Samiko Miyazaki; Kantek, Daniel Luis Zanella; Crawshaw Júnior, Peter Gransden; Morato, Ronaldo Gonçalves; May-Júnior, Joares Adenilson; Morais, Zenaide Maria de; Ferreira Neto, José Soares; Aguiar, Daniel Moura de

    2015-01-01

    This study aimed to assess the exposure of free-living jaguars (Panthera onca) to Leptospira spp. and Brucella abortus in two conservation units in the Pantanal of Mato Grosso, Brazil. The presence of antibodies in blood samples of eleven jaguars was investigated using autochthonous antigens isolated in Brazil added to reference antigen collection applied to diagnosis of leptospirosis by Microscopic Agglutination Test (MAT). The Rose Bengal test was applied for B. abortus antibodies. Two (18.2%) jaguars were seroreactive for the Leptospira spp. antigen and the serovar considered as most infective in both animals was a Brazilian isolate of serovar Canicola (L01). All jaguars were seronegative for B. abortus. These data indicate that the inclusion of autochthonous antigens in serological studies can significantly increase the number of reactive animals, as well as modify the epidemiological profile of Leptospira spp. infection.

  7. DETECTION OF Leptospira spp. AND Brucella abortus ANTIBODIES IN FREE-LIVING JAGUARS (Panthera onca IN TWO PROTECTED AREAS OF NORTHERN PANTANAL, BRAZIL

    Directory of Open Access Journals (Sweden)

    Selma Samiko Miyazaki ONUMA

    2015-04-01

    Full Text Available This study aimed to assess the exposure of free-living jaguars (Panthera onca to Leptospira spp. and Brucella abortus in two conservation units in the Pantanal of Mato Grosso, Brazil. The presence of antibodies in blood samples of eleven jaguars was investigated using autochthonous antigens isolated in Brazil added to reference antigen collection applied to diagnosis of leptospirosis by Microscopic Agglutination Test (MAT. The Rose Bengal test was applied for B. abortus antibodies. Two (18.2% jaguars were seroreactive for the Leptospira spp. antigen and the serovar considered as most infective in both animals was a Brazilian isolate of serovar Canicola (L01. All jaguars were seronegative for B. abortus. These data indicate that the inclusion of autochthonous antigens in serological studies can significantly increase the number of reactive animals, as well as modify the epidemiological profile of Leptospira spp. infection.

  8. Promoção do crescimento do feijoeiro e controle da antracnose por Trichoderma spp

    Directory of Open Access Journals (Sweden)

    Erica Aparecida de Souza Pedro

    2012-11-01

    Full Text Available O objetivo deste trabalho foi avaliar a capacidade de Trichoderma spp. em promover o crescimento de plantas de feijão e reduzir a severidade da antracnose do feijoeiro (Colletotrichum lindemuthianum, bem como identificar os isolados mais eficientes. Sessenta isolados de Trichoderma spp. foram avaliados quanto à capacidade de promoção do crescimento nas plantas. Os sete isolados que mais se destacaram foram adicionados ao substrato de cultivo e avaliados quanto à redução na severidade da antracnose em plantas de feijão tratadas com conídios de C. lindemuthianum. Os mais eficientes no controle da doença foram identificados por sequenciamento de DNA. O isolado IB 28/07 foi avaliado nas concentrações 0,5, 1, 1,5 e 2% (peso:volume, que reduziram a severidade da doença em 41,51, 55,15, 81,82 e 96,06%, respectivamente. Os isolados mais eficientes de Trichoderma spp. podem proporcionar aumentos superiores a 30% na produção de matéria seca da parte aérea das plantas e reduzir a severidade da doença entre 63 e 98%. Esses isolados foram identificados como pertencentes às espécies Trichoderma harzianum, T. strigosum e T. theobromicola.

  9. Frequency of Leptospira spp. in sheep from Brazilian slaughterhouses and its association with epidemiological variables

    Directory of Open Access Journals (Sweden)

    Rodrigo Costa da Silva

    2012-03-01

    Full Text Available Leptospirosis is a worldwide anthropozoonosis that infects livestock, including sheep as the carriers to other animals and humans. The present study aimed to determine the prevalence of Leptospira spp. in sheep from two slaughterhouses in the state of São Paulo, Brazil and its association with epidemiological variables. Serum samples from 182 sheep were evaluated for Leptospira spp. antibodies by microscopic agglutination test (MAT. Results indicated 34/182 (18.68%; CI95% 13.70-24.98% positive serum samples, mainly to the serovar Copenhageni (17/34; 50%; CI95% 33.99-66.01%. Bacterial growth in the Fletcher medium was detected for 13/34 (38.24%; CI95% 23.87-55.08% animals, and confirmed by Polymerase Chain Reaction (PCR and sequencing for only two kidney samples from two animals. Thus, treatment and vaccination of sheep, besides rodent control, can be useful to prevent the infection in the studied region since sheep are important Leptospira spp. carriers, and its transmission to slaughterhouse workers is mainly through the manipulation of visceral tissues.

  10. Electrospun magnetic nanofibre mats – A new bondable biomaterial using remotely activated magnetic heating

    Energy Technology Data Exchange (ETDEWEB)

    Zhong, Yi [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Key Laboratory of Science & Technology of Eco-Textile, Ministry of Education, College of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai (China); Leung, Victor; Yuqin Wan, Lynn [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Dutz, Silvio [Institut für Biomedizinische Technik und Informatik, Technische Universität Ilmenau (Germany); Department of Nano Biophotonics, Leibniz Institute of Photonic Technology, Jena (Germany); Ko, Frank K., E-mail: frank.ko@ubc.ca [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Häfeli, Urs O., E-mail: urs.hafeli@ubc.ca [Faculty of Pharmaceutical Sciences, University of British Columbia, Vancouver (Canada)

    2015-04-15

    A solvothermal process was adopted to produce hydrophilic magnetite (Fe{sub 3}O{sub 4}) nanoparticles which were subsequently emulsified with a chloroform/methanol (70/30 v/v) solution of poly(caprolactone) (PCL) and then electrospun into a 0.2 mm thick PCL mat. The magnetic heating of the mats at a field amplitude of 25 kA/m and frequency of 400 kHz exhibited promising efficiency for magnetic hyperthermia, with a specific absorption rate of about 40 W/g for the magnetic mat. The produced heat was used to melt the magnetic mat onto the surrounding non-magnetic polymer mat from within, without destroying the nanostructure of the non-magnetic polymer more than 0.5 mm away. Magnetic nanofibre mats might thus be useful for internal heat sealing applications, and potentially also for thermotherapy.

  11. Glutaraldehyde vapor cross-linked nanofibrous PVA mat with in situ formed silver nanoparticles.

    Science.gov (United States)

    Destaye, Addisu Getachew; Lin, Cheng-Keng; Lee, Cheng-Kang

    2013-06-12

    Polyvinyl alcohol (PVA) nanofibrous mat can be easily prepared via electrospinning its aqueous solution. However, the obtained nanofibrous mat is instantaneously dissolved in water. Therefore, rendering the environmentally friendly nanofibrous mat water insoluble by cross-linking mechanism is of great interest. The electrospun PVA nanofibrous mat with an average fiber diameter of ca. 400 nm could be effectively cross-linked by glutaraldehyde vapor at room temperature. The cross-linking not only resulted in a water-insoluble nanofibrous mat but also generated an excess amount of unreacted aldehyde functional groups that could reduce silver salts into silver nanoparticles. The in situ formed silver nanoparticles along the fibrous surface showed excellent antimicrobial activity against Escherichia coli. The vapor cross-linked nanofibrous mat shows a high potential to be used for efficiently capturing and killing pathogenic bacteria.

  12. Evaluation of Faun MLC-70 Trackway Mat System Under Simulated F-15 Traffic

    Science.gov (United States)

    2014-05-01

    Figure 29. Broken mat panel after 112 passes on the 25-50 CBR section. Figure 30. Excessive rutting and bow -wave formation after 240 passes...stronger soils. Results of traffic tests presented herein include individual mat panel properties, pretest and posttest sub- grade soil conditions, subgrade...ERDC/GSL TR-14-13 v Figures and Tables Figures Figure 1. 25-50 CBR test section mat panel layout

  13. New crosslinkers for electrospun chitosan fibre mats. Part II: mechanical properties

    OpenAIRE

    Donius, Amalie E.; Kiechel, Marjorie A.; Schauer, Caroline L.; Wegst, Ulrike G.K.

    2013-01-01

    Few studies exist on the mechanical performance of crosslinked electrospun chitosan (CS) fibre mats. In this study, we show that the mat structure and mechanical performance depend on the different crosslinking agents genipin, epichlorohydrin (ECH), and hexamethylene-1,6-diaminocarboxysulphonate (HDACS), as well as the post-electrospinning heat and base activation treatments. The mat structure was imaged by field emission scanning electron microscopy and the mechanical performance was tested ...

  14. MILLIMETER-SCALE GENETIC GRADIENTS AND COMMUNITY-LEVEL MOLECULAR CONVERGENCE IN A HYPERSALINE MICROBIAL MAT

    Energy Technology Data Exchange (ETDEWEB)

    Fenner, Marsha W; Kunin, Victor; Raes, Jeroen; Harris, J. Kirk; Spear, John R.; Walker, Jeffrey J.; Ivanova, Natalia; Mering, Christian von; Bebout, Brad M.; Pace, Norman R.; Bork, Peer; Hugenholtz, Philip

    2008-04-30

    To investigate the extent of genetic stratification in structured microbial communities, we compared the metagenomes of 10 successive layers of a phylogenetically complex hypersaline mat from Guerrero Negro, Mexico. We found pronounced millimeter-scale genetic gradients that are consistent with the physicochemical profile of the mat. Despite these gradients, all layers displayed near identical and acid-shifted isoelectric point profiles due to a molecular convergence of amino acid usage indicating that hypersalinity enforces an overriding selective pressure on the mat community.

  15. Promoção do crescimento do feijoeiro e controle da antracnose por Trichoderma spp Plant growth promotion of common bean and anthracnose control by Trichoderma spp

    Directory of Open Access Journals (Sweden)

    Erica Aparecida de Souza Pedro

    2012-11-01

    Full Text Available O objetivo deste trabalho foi avaliar a capacidade de Trichoderma spp. em promover o crescimento de plantas de feijão e reduzir a severidade da antracnose do feijoeiro (Colletotrichum lindemuthianum, bem como identificar os isolados mais eficientes. Sessenta isolados de Trichoderma spp. foram avaliados quanto à capacidade de promoção do crescimento nas plantas. Os sete isolados que mais se destacaram foram adicionados ao substrato de cultivo e avaliados quanto à redução na severidade da antracnose em plantas de feijão tratadas com conídios de C. lindemuthianum. Os mais eficientes no controle da doença foram identificados por sequenciamento de DNA. O isolado IB 28/07 foi avaliado nas concentrações 0,5, 1, 1,5 e 2% (peso:volume, que reduziram a severidade da doença em 41,51, 55,15, 81,82 e 96,06%, respectivamente. Os isolados mais eficientes de Trichoderma spp. podem proporcionar aumentos superiores a 30% na produção de matéria seca da parte aérea das plantas e reduzir a severidade da doença entre 63 e 98%. Esses isolados foram identificados como pertencentes às espécies Trichoderma harzianum, T. strigosum e T. theobromicola.The objective of this work was to evaluate the ability of Trichoderma spp. to promote growth of common bean plants and to reduce severity of anthracnose (Colletotrichum lindemuthianum, as well as to identify the best performing isolates. Sixty Trichoderma spp. isolates were evaluated as to their capacity to promote growth in common bean. The seven isolates that stood out were added to the culture substrate and assessed for reduction in severity of anthracnose in bean plants treated with C. lindemuthianum conidia. The most efficient isolates in controlling the disease were identified by DNA sequencing. The IB 28/07 isolate was evaluated in the concentrations 0.5, 1, 1.5, and 2% (weight:volume, which reduced disease severity in 41.51, 55.15, 81.82, and 96.06%, respectively. The most efficient Trichoderma spp

  16. [Mycoses and zoonoses: Cryptococcus spp].

    Science.gov (United States)

    Cabañes, F Javier

    2008-03-01

    The term "zoonosis" is difficult to delimit because different authors have various definitions for this term. Few mycoses are usually considered zoonoses. However, the role that animals play in the epidemiology of the main human mycoses is still not well known. Moreover, the environmental niches for these fungal agents have not yet been completely determined. This special issue of the "Revista Iberoamericana de Micología" deals with the talks and round table presented at the VIII Spanish Mycological Congress held in October 2006 in Barcelona, Spain on "Cryptococcus spp. and zoonoses".

  17. Coastal microbial mat diversity along a natural salinity gradient.

    Directory of Open Access Journals (Sweden)

    Henk Bolhuis

    Full Text Available The North Sea coast of the Dutch barrier island of Schiermonnikoog is covered by microbial mats that initiate a succession of plant communities that eventually results in the development of a densely vegetated salt marsh. The North Sea beach has a natural elevation running from the low water mark to the dunes resulting in gradients of environmental factors perpendicular to the beach. These gradients are due to the input of seawater at the low water mark and of freshwater from upwelling groundwater at the dunes and rainfall. The result is a natural and dynamic salinity gradient depending on the tide, rainfall and wind. We studied the microbial community composition in thirty three samples taken every ten meters along this natural salinity gradient by using denaturing gradient gel electrophoresis (DGGE of rRNA gene fragments. We looked at representatives from each Domain of life (Bacteria, Archaea and Eukarya and with a particular emphasis on Cyanobacteria. Analysis of the DGGE fingerprints together with pigment composition revealed three distinct microbial mat communities, a marine community dominated by diatoms as primary producers, an intermediate brackish community dominated by Cyanobacteria as primary producers and a freshwater community with Cyanobacteria and freshwater green algae.

  18. Electrospun nanofibrous mats: from vascular repair to osteointegration.

    Science.gov (United States)

    Ribba, L; Parisi, M; D'Accorso, N B; Goyanes, S

    2014-12-01

    Electrospinning is a versatile technique for generating a mat of continuous fibers with diameters from a few nanometers to several micrometers. The diversity of electrospinnable materials, and the unique features associated with electrospun fibers make this technique and its resultant structures attractive for applications in the biomedical field. This article presents an overview of this technique focusing on its application for tissue engineering. In particular, the advantages and disadvantages of using an electrospinning mat for biomedical applications are discussed. It reviews the different available electrospinning configurations, detailing how the different process variables and material types determine the obtained fibers characteristics. Then a description of how nanofiber based scaffolds offer great promise in the regeneration or function restoration of damaged or diseased bones, muscles or nervous tissue is reported. Different methods for incorporating active agents on nanofibers and controlling their release mechanisms are also reviewed. The review concludes with some personal perspectives on the future work to be done in order to include electrospinning technique in the industrial development of biomedical materials.

  19. Aligned Electrospun Polyvinyl Pyrrolidone/Poly ɛ-Caprolactone Blend Nanofiber Mats for Tissue Engineering

    Science.gov (United States)

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Opanasopit, Praneet

    2016-02-01

    Electrospun nanofibrous materials are widely used in medical applications such as tissue engineering scaffolds, wound dressing material and drug delivery carriers. For tissue engineering scaffolds, the structure of the nanofiber is similar to extracellular matrix (ECM) which promotes the cell growth and proliferation. In the present study, the aligned nanofiber mats of polyvinyl pyrrolidone (PVP) blended poly ɛ-caprolactone (PCL) was successfully generated using electrospinning technique. The morphology of PVP/PCL nanofiber mats were characterized by scanning electron microspore (SEM). The chemical and crystalline structure of PVP/PCL nanofiber mats were analyzed using Fourier transform infrared spectroscopy (FTIR) and powder X-ray diffactometer (PXRD). The water contact angle of mats was investigated. Cell culture studies using normal human fibroblasts (NHF) were performed to assess cell morphology, cell alignment and cell proliferation. The results indicated that the fiber were in nanometer range. The PVP/PCL was well dispersed in nanofiber mats and was in amorphous form. The water contact angle of PVP/PCL nanofiber mats was lower than PCL nanofiber mats. The PVP/PCL nanofiber mats exhibited good biocompatibility with NHF cells. In summary, the PVP/PCL nanofiber mats had potential to be used in tissue engineering and regenerative medicine.

  20. Un matérialisme « stupéfiant »

    OpenAIRE

    Berdet, Marc

    2014-01-01

    Ce texte se veut programmatique. Il dresse le portrait politique d’un Walter Benjamin en « matérialiste anthropologique », portrait sous le signe duquel se place la présente revue. En suivant certaines indications du philosophe, il dégage cinq grandes familles du matérialisme anthropologique, en démontre le dénominateur commun, pour en proposer finalement une première définition minimale. Il montre comment le matérialisme anthropologique déplace le cadre conceptuel du matérialisme dialectique...

  1. New crosslinkers for electrospun chitosan fibre mats. Part II: mechanical properties.

    Science.gov (United States)

    Donius, Amalie E; Kiechel, Marjorie A; Schauer, Caroline L; Wegst, Ulrike G K

    2013-04-06

    Few studies exist on the mechanical performance of crosslinked electrospun chitosan (CS) fibre mats. In this study, we show that the mat structure and mechanical performance depend on the different crosslinking agents genipin, epichlorohydrin (ECH), and hexamethylene-1,6-diaminocarboxysulphonate (HDACS), as well as the post-electrospinning heat and base activation treatments. The mat structure was imaged by field emission scanning electron microscopy and the mechanical performance was tested in tension. The elastic modulus, tensile strength, strain at failure and work to failure were found to range from 52 to 592 MPa, 2 to 30 MPa, 2 to 31 per cent and 0.041 to 3.26 MJ m(-3), respectively. In general, neat CS mats were found to be the stiffest and the strongest, though least ductile, while CS-ECH mats were the least stiff, weakest, but the most ductile, and CS-HDACS fibre mats exhibited intermediary mechanical properties. The mechanical performance of the mats is shown to reflect differences in the fibre diameter, number of fibre-fibre contacts formed within the mat, as well as varying intermolecular bonding and moisture content. The findings reported here complement the chemical properties of the mats, described in part I of this study.

  2. Oriënterende emissiemetingen aan de Comfort Slat Mats voor melkvee = Explorative emission measurements on Comfort Slat Mats for dairy cattle

    NARCIS (Netherlands)

    Dooren, van H.J.C.; Blanken, K.; Gunnink, H.

    2009-01-01

    Emissions of ammonia and methane from the comfort slat mats (a new floor type for dairy cattle) were measured with a dynamic box method. Emissions were reduced up to 50% for ammonia and for 75% for methane.

  3. Freezing of water saturated in aluminum wool mats

    Energy Technology Data Exchange (ETDEWEB)

    Sugawara, M.; Onodera, T.; Komatsu, Y.; Tago, M. [Akita University, Department of Mechanical Engineering, Faculty of Engineering and Resource Science, Akita (Japan); Beer, H. [Technische Universitat Darmstadt, Institut fur Technische Thermodynamik, Darmstadt (Germany)

    2008-05-15

    This paper is concerned with the freezing of water saturated in aluminum wool mats (AWM) around a cooling pipe. Two arrangements of AWM around the pipe are considered, i.e. a disk-type and a roll-type. Freezing mass M(kg/m{sup 2}) in the disk type for a porosity {epsilon} = 0.95, indicates to be two times larger compared with that without AWM (i.e. {epsilon} = 1) at the freezing time t = 180 min. Even a small AWM volume fraction enhances considerably freezing of water in the disk type. However, freezing enhancement in the roll type is small compared with that of the disk type. Numerical calculation predicts well freezing at the disk type arrangement by using an anisotropy model for the effective thermal conductivity of ice/water saturated AWM, however, poor predictions for the roll type arrangement. (orig.)

  4. Freezing of water saturated in aluminum wool mats

    Science.gov (United States)

    Sugawara, M.; Onodera, T.; Komatsu, Y.; Tago, M.; Beer, H.

    2008-05-01

    This paper is concerned with the freezing of water saturated in aluminum wool mats (AWM) around a cooling pipe. Two arrangements of AWM around the pipe are considered, i.e. a disk-type and a roll-type. Freezing mass M(kg/m2) in the disk type for a porosity ɛ = 0.95, indicates to be two times larger compared with that without AWM (i.e. ɛ = 1) at the freezing time t = 180 min. Even a small AWM volume fraction enhances considerably freezing of water in the disk type. However, freezing enhancement in the roll type is small compared with that of the disk type. Numerical calculation predicts well freezing at the disk type arrangement by using an anisotropy model for the effective thermal conductivity of ice/water saturated AWM, however, poor predictions for the roll type arrangement.

  5. MatArray: a Matlab toolbox for microarray data.

    Science.gov (United States)

    Venet, David

    2003-03-22

    The microarray technology allows the high-throughput quantification of the mRNA level of thousands of genes under dozens of conditions, generating a wealth of data which must be analyzed using some form of computational means. A popular framework for such analysis is Matlab, a powerful computing language for which many functions have been written. However, although complex topics like neural networks or principal component analysis are freely available in Matlab, functions to perform more basic tasks like data normalization or hierarchical clustering in an efficient manner are not. The MatArray toolbox aims at filling this gap by offering efficient implementations of the most needed functions for microarray analysis. The functions in the toolbox are command-line only, since it is geared toward seasoned Matlab users.

  6. Metagenomic insights into the dominant Fe(II oxidizing Zetaproteobacteria from an iron mat at Lōi’hi, Hawai’I

    Directory of Open Access Journals (Sweden)

    Esther eSinger

    2013-03-01

    Full Text Available Zetaproteobacteria are among the most prevalent Fe(II oxidizing bacteria at deep-sea hydrothermal vents; however, knowledge about their environmental significance is limited. We provide metagenomic insights into an iron mat at the Lōʻihi Seamount, Hawai’I, revealing novel genomic information of locally dominant Zetaproteobacteria lineages. These lineages were previously estimated to account for ~13% of all local Zetaproteobacteria based on 16S clone library data. Biogeochemically relevant genes include nitrite reductases, which were previously not identified in Zetaproteobacteria, sulfide:quinone oxidases, and ribulose-1,5-bisphosphate carboxylase (RuBisCo. Genes assumed to be involved in Fe(II oxidation correlate in synteny and share 70% AASim with those previously identified in the related Zetaproteobacterium Mariprofundus ferrooxydans PV-1. Overall, Zetaproteobacteria genes appear to originate primarily from within the Proteobacteria and the Fe(II oxidizing Leptospirillum spp. and are predicted to facilitate adaptation to a deep-sea hydrothermal vent environment in addition to microaerophilic Fe(II and H2S oxidation. This dataset represents the first metagenomic study of Fe(II oxidizing bacteria (FeOB from an iron oxide mat at a deep-sea hydrothermal habitat.

  7. Methylmercury enters an aquatic food web through acidophilic microbial mats in Yellowstone National Park, Wyoming

    Science.gov (United States)

    Boyd, E.S.; King, S.; Tomberlin, J.K.; Nordstrom, D.K.; Krabbenhoft, D.P.; Barkay, T.; Geesey, G.G.

    2009-01-01

    Summary Microbial mats are a visible and abundant life form inhabiting the extreme environments in Yellowstone National Park (YNP), WY, USA. Little is known of their role in food webs that exist in the Park's geothermal habitats. Eukaryotic green algae associated with a phototrophic green/purple Zygogonium microbial mat community that inhabits low-temperature regions of acidic (pH ??? 3.0) thermal springs were found to serve as a food source for stratiomyid (Diptera: Stratiomyidae) larvae. Mercury in spring source water was taken up and concentrated by the mat biomass. Monomethylmercury compounds (MeHg +), while undetectable or near the detection limit (0.025 ng l -1) in the source water of the springs, was present at concentrations of 4-7 ng g-1 dry weight of mat biomass. Detection of MeHg + in tracheal tissue of larvae grazing the mat suggests that MeHg+ enters this geothermal food web through the phototrophic microbial mat community. The concentration of MeHg+ was two to five times higher in larval tissue than mat biomass indicating MeHg+ biomagnification occurred between primary producer and primary consumer trophic levels. The Zygogonium mat community and stratiomyid larvae may also play a role in the transfer of MeHg+ to species in the food web whose range extends beyond a particular geothermal feature of YNP. ?? 2008 The Authors. Journal compilation ?? 2008 Society for Applied Microbiology and Blackwell Publishing Ltd.

  8. COMPETITION BETWEEN ANOXYGENIC PHOTOTROPHIC BACTERIA AND COLORLESS SULFUR BACTERIA IN A MICROBIAL MAT

    NARCIS (Netherlands)

    VISSCHER, PT; VANDENENDE, FP; SCHAUB, BEM; VANGEMERDEN, H

    1992-01-01

    The populations of chemolithoautotrophic (colorless) sulfur bacteria and anoxygenic phototrophic bacteria were enumerated in a marine microbial mat. The highest population densities were found in the 0-5 mm layer of the mat: 2.0 X 10(9) cells CM-3 sediment, and 4.0 X 10(7) cells cm-3 sediment for th

  9. RATES OF SULFATE REDUCTION AND THIOSULFATE CONSUMPTION IN A MARINE MICROBIAL MAT

    NARCIS (Netherlands)

    VISSCHER, PT; PRINS, RA; VANGEMERDEN, H

    1992-01-01

    The sulfur cycle in a microbial mat was studied by determining viable counts of sulfate-reducing bacteria, chemolithoautotrophic sulfur bacteria and anoxygenic phototrophic bacteria. All three functional groups of sulfur bacteria revealed a maximum population density in the uppermost 5 mm of the mat

  10. Using Talking Mats to Support Communication in Persons with Huntington's Disease

    Science.gov (United States)

    Ferm, Ulrika; Sahlin, Anna; Sundin, Linda; Hartelius, Lena

    2010-01-01

    Background: Many individuals with Huntington's disease experience reduced functioning in cognition, language and communication. Talking Mats is a visually based low technological augmentative communication framework that supports communication in people with different cognitive and communicative disabilities. Aims: To evaluate Talking Mats as a…

  11. Interaction of gelatin with polyenes modulates antifungal activity and biocompatibility of electrospun fiber mats.

    Science.gov (United States)

    Lakshminarayanan, Rajamani; Sridhar, Radhakrishnan; Loh, Xian Jun; Nandhakumar, Muruganantham; Barathi, Veluchamy Amutha; Kalaipriya, Madhaiyan; Kwan, Jia Lin; Liu, Shou Ping; Beuerman, Roger Wilmer; Ramakrishna, Seeram

    2014-01-01

    Topical application of antifungals does not have predictable or well-controlled release characteristics and requires reapplication to achieve therapeutic local concentration in a reasonable time period. In this article, the efficacy of five different US Food and Drug Administration-approved antifungal-loaded (amphotericin B, natamycin, terbinafine, fluconazole, and itraconazole) electrospun gelatin fiber mats were compared. Morphological studies show that incorporation of polyenes resulted in a two-fold increase in fiber diameter and the mats inhibit the growth of yeasts and filamentous fungal pathogens. Terbinafine-loaded mats were effective against three filamentous fungal species. Among the two azole antifungals compared, the itraconazole-loaded mat was potent against Aspergillus strains. However, activity loss was observed for fluconazole-loaded mats against all of the test organisms. The polyene-loaded mats displayed rapid candidacidal activities as well. Biophysical and rheological measurements indicate strong interactions between polyene antifungals and gelatin matrix. As a result, the polyenes stabilized the triple helical conformation of gelatin and the presence of gelatin decreased the hemolytic activity of polyenes. The polyene-loaded fiber mats were noncytotoxic to primary human corneal and sclera fibroblasts. The reduction of toxicity with complete retention of activity of the polyene antifungal-loaded gelatin fiber mats can provide new opportunities in the management of superficial skin infections.

  12. Understanding Molecular Recognition of Promiscuity of Thermophilic Methionine Adenosyltransferase, sMAT from Sulfolobus solfataricus

    Science.gov (United States)

    Wang, Fengbin; Singh, Shanteri; Zhang, Jianjun; Huber, Tyler D.; Helmich, Kate E.; Sunkara, Manjula; Hurley, Katherine A.; Goff, Randal D.; Bingman, Craig A.; Morris, Andrew J.; Thorson, Jon S.; Phillips, George N.

    2014-01-01

    Methionine adenosyltransferase (MAT) is a family of enzymes that utilizes ATP and methionine to produce S-adenosylmethionine (AdoMet), the most crucial methyl donor in the biological methylation of biomolecules and bioactive natural products. Here, we report that the MAT from Sulfolobus solfataricus (sMAT), an enzyme from a poorly explored class of the MAT family, has the ability to produce a range of differentially alkylated AdoMet analogs in the presence of non-native methionine analogs and ATP. To investigate the molecular basis for AdoMet analog production, we have crystallized the sMAT in the AdoMet bound, S-adenosylethionine (AdoMet) bound, and unbound forms. Notably, among these structures, the AdoEth-bound form offers the first MAT structure containing a non-native product and cumulatively, these structures add new structural insight into the MAT family and allow for detailed active site comparison with its homologs in E. coli and human. As a thermostable MAT structure from archaea, the structures herein also provide as a basis for future engineering to potentially broaden AdoMet analog production as reagents for methyltransferase-catalyzed ‘alkylrandomization’ and/or the study of methylation in the context of biological processes. PMID:24649856

  13. Methylmercury enters an aquatic food web through acidophilic microbial mats in Yellowstone National Park, Wyoming.

    Science.gov (United States)

    Boyd, Eric S; King, Susan; Tomberlin, Jeffery K; Nordstrom, D Kirk; Krabbenhoft, David P; Barkay, Tamar; Geesey, Gill G

    2009-04-01

    Microbial mats are a visible and abundant life form inhabiting the extreme environments in Yellowstone National Park (YNP), WY, USA. Little is known of their role in food webs that exist in the Park's geothermal habitats. Eukaryotic green algae associated with a phototrophic green/purple Zygogonium microbial mat community that inhabits low-temperature regions of acidic (pH approximately 3.0) thermal springs were found to serve as a food source for stratiomyid (Diptera: Stratiomyidae) larvae. Mercury in spring source water was taken up and concentrated by the mat biomass. Monomethylmercury compounds (MeHg(+)), while undetectable or near the detection limit (0.025 ng l(-1)) in the source water of the springs, was present at concentrations of 4-7 ng g(-1) dry weight of mat biomass. Detection of MeHg(+) in tracheal tissue of larvae grazing the mat suggests that MeHg(+) enters this geothermal food web through the phototrophic microbial mat community. The concentration of MeHg(+) was two to five times higher in larval tissue than mat biomass indicating MeHg(+) biomagnification occurred between primary producer and primary consumer trophic levels. The Zygogonium mat community and stratiomyid larvae may also play a role in the transfer of MeHg(+) to species in the food web whose range extends beyond a particular geothermal feature of YNP.

  14. Polyelectrolyte-Functionalized Nanofiber Mats Control the Collection and Inactivation of Escherichia coli

    Directory of Open Access Journals (Sweden)

    Katrina A. Rieger

    2016-04-01

    Full Text Available Quantifying the effect that nanofiber mat chemistry and hydrophilicity have on microorganism collection and inactivation is critical in biomedical applications. In this study, the collection and inactivation of Escherichia coli K12 was examined using cellulose nanofiber mats that were surface-functionalized using three polyelectrolytes: poly (acrylic acid (PAA, chitosan (CS, and polydiallyldimethylammonium chloride (pDADMAC. The polyelectrolyte functionalized nanofiber mats retained the cylindrical morphology and average fiber diameter (~0.84 µm of the underlying cellulose nanofibers. X-ray photoelectron spectroscopy (XPS and contact angle measurements confirmed the presence of polycations or polyanions on the surface of the nanofiber mats. Both the control cellulose and pDADMAC-functionalized nanofiber mats exhibited a high collection of E. coli K12, which suggests that mat hydrophilicity may play a larger role than surface charge on cell collection. While the minimum concentration of polycations needed to inhibit E. coli K12 was 800 µg/mL for both CS and pDADMAC, once immobilized, pDADMAC-functionalized nanofiber mats exhibited a higher inactivation of E. coli K12, (~97%. Here, we demonstrate that the collection and inactivation of microorganisms by electrospun cellulose nanofiber mats can be tailored through a facile polyelectrolyte functionalization process.

  15. Physicochemical evolution and positive selection of the gymnosperm matK proteins

    Indian Academy of Sciences (India)

    Da Cheng Hao; Jun Mu; Shi Lin Chen; Pei Gen Xiao

    2010-04-01

    It is not clear whether matK evolves under Darwinian selection. In this study, the gymnosperm Taxaceae, Cephalotaxaceae and Pinaceae were used to illustrate the physicochemical evolution, molecular adaptation and evolutionary dynamics of gene divergence in matKs. matK sequences were amplified from 27 Taxaceae and 12 Cephalotaxaceae species. matK sequences of 19 Pinaceae species were retrieved from GenBank. The phylogenetic tree was generated using conceptual-translated amino acid sequences. Selective influences were investigated using standard $d_{\\text{N}}/d_{\\text{S}}$ ratio methods and more sensitive techniques investigating the amino acid property changes resulting from nonsynonymous replacements in a phylogenetic context. Analyses revealed the presence of positive selection in matKs (N-terminal region, RT domain and domain X) of Taxaceae and Pinaceae, and found positive destabilizing selection in N-terminal region and RT domain of Cephalotaxaceae matK. Moreover, various amino acid properties were found to be influenced by destabilizing positive selection. Amino acid sites relating to these properties and to different secondary structures were found and have the potential to affect group II intron maturase function. Despite the evolutionary constraint on the rapidly evolving matK, this protein evolves under positive selection in gymnosperm. Several regions of matK have experienced molecular adaptation which fine-tunes maturase performance.

  16. Perfect simulation and moment properties for the Matérn type III process

    DEFF Research Database (Denmark)

    Møller, Jesper; Huber, Mark L.; Wolpert, Robert L.

    2010-01-01

    In a seminal work, Bertil Matérn introduced several types of processes for modeling repulsive point processes. In this paper an algorithm is presented for the perfect simulation of the Matérn III process within a bounded window in , fully accounting for edge effects. A simple upper bound...

  17. Perfect simulation and moment properties for the Matérn type III process

    DEFF Research Database (Denmark)

    Møller, Jesper; Huber, Mark L.; Wolpert, Robert L.

    In a seminal work, Bertil Matérn introduced several types of processes for modeling repulsive point processes. In this paper an algorithm is presented for the perfect simulation of the Mat´ern III process within a bounded window in Rd fully accounting for edge effects. A simple upper bound...

  18. Polycaprolactone-Chitin Nanofibrous Mats as Potential Scaffolds for Tissue Engineering

    Directory of Open Access Journals (Sweden)

    Min Sup Kim

    2012-01-01

    Full Text Available We describe here the preparation of poly(caprolactone (PCL-chitin nanofibrous mats by electrospinning from a blended solution of PCL and chitin dissolved in a cosolvent, 1,1,1,3,3,3-hexafluoro-2-propanol and trifluoroacetic acid. Scanning electron microscopy showed that the neutralized PCL-chitin nanofibrous mats were morphologically stable, with a mean diameter of 340.5±2.6 nm, compared with a diameter of 524.2±12.1 nm for PCL mats. The nanofibrous mats showed decreased water contact angles as the proportion of chitin increased. However, the tensile properties of nanofibrous mats containing 30~50% (wt/wt chitin were enhanced compared with PCL-only mats. In vitro studies showed that the viability of human dermal fibroblasts (HDFs for up to 7 days in culture was higher on composite (OD value: 1.42±0.09 than on PCL-only (0.51±0.14 nanofibrous mats, with viability correlated with chitin concentration. Together, our results suggest that PCL-chitin nanofibrous mats can be used as an implantable substrate to modulate HDF viability in tissue engineering.

  19. Floating mats: their occurrence and influence on shoreline distribution of emergent vegetation

    NARCIS (Netherlands)

    Azza, N.; Denny, P.; Van de Koppel, J.; Kansiime, F.

    2006-01-01

    1. A study was conducted on the northern shore of Lake Victoria (Uganda) to determine the factors controlling the occurrence of floating root mats and the influence of the floating mats on the distribution of emergent vegetation. 2. Environmental conditions within 78 bays in the study area were char

  20. Genetic modification of sugarcane (Saccharum spp.) aiming the production of conjugated fatty acids

    OpenAIRE

    João Fernando Bortoleto

    2010-01-01

    Plantas transgênicas constituem interessantes alternativas para a produção de compostos com elevado valor agregado como polímeros industriais, proteínas farmacológicas e lipídios nutracêuticos. Como candidata à biofábrica, a cana-de-açúcar (Saccharum spp.) apresenta características agronômicas favoráveis, além de versatilidade de matéria-prima, que é empregada em fins tradicionais, como produção de álcool e açúcar, e até mesmo para geração de energia ou como forragem para alimentação de gado....

  1. The architecture of iron microbial mats reflects the adaptation of chemolithotrophic iron oxidation in freshwater and marine environments

    Directory of Open Access Journals (Sweden)

    Clara S Chan

    2016-06-01

    Full Text Available Microbes form mats with architectures that promote efficient metabolism within a particular physicochemical environment, thus studying mat structure helps us understand ecophysiology. Despite much research on chemolithotrophic Fe-oxidizing bacteria, Fe mat architecture has not been visualized because these delicate structures are easily disrupted. There are striking similarities between the biominerals that comprise freshwater and marine Fe mats, made by Beta- and Zetaproteobacteria, respectively. If these biominerals are assembled into mat structures with similar functional morphology, this would suggest that mat architecture is adapted to serve roles specific to Fe oxidation. To evaluate this, we combined light, confocal, and scanning electron microscopy of intact Fe microbial mats with experiments on sheath formation in culture, in order to understand mat developmental history and subsequently evaluate the connection between Fe oxidation and mat morphology. We sampled a freshwater sheath mat from Maine and marine stalk and sheath mats from Loihi Seamount hydrothermal vents, Hawaii. Mat morphology correlated to niche: stalks formed in steeper O2 gradients while sheaths were associated with low to undetectable O2 gradients. Fe-biomineralized filaments, twisted stalks or hollow sheaths, formed the highly porous framework of each mat. The mat-formers are keystone species, with nascent marine stalk-rich mats comprised of novel and uncommon Zetaproteobacteria. For all mats, filaments were locally highly parallel with similar morphologies, indicating that cells were synchronously tracking a chemical or physical cue. In the freshwater mat, cells inhabited sheath ends at the growing edge of the mat. Correspondingly, time lapse culture imaging showed that sheaths are made like stalks, with cells rapidly leaving behind an Fe oxide filament. The distinctive architecture common to all observed Fe mats appears to serve specific functions related to

  2. MatLab Programming for Engineers Having No Formal Programming Knowledge

    Science.gov (United States)

    Shaykhian, Linda H.; Shaykhian, Gholam Ali

    2007-01-01

    MatLab is one of the most widely used very high level programming languages for Scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. Also, stated are the current limitations of the MatLab, which possibly can be taken care of by Mathworks Inc. in a future version to make MatLab more versatile.

  3. Biomedical Applications of Antibacterial Nanofiber Mats Made of Electrospinning with Wire Electrodes

    Directory of Open Access Journals (Sweden)

    Yi-Jun Pan

    2016-02-01

    Full Text Available Twisted stainless steel wires are used as wire electrodes for electrospinning the polyvinyl alcohol (PVA/zinc citrate nanofiber mats. The morphology and diameter of the nanofibers in PVA/zinc citrate nanofiber mats are evaluated. We measured the antibacterial efficacy against Staphylococcus aureus (S. aureus and Escherichia coli (E. coli of the nanofiber mats. We also examined the cell adhesion affinity of mammalian tissue culture cells on these nanofiber mats. Our results indicate that an increase in zinc citrate increases the viscosity and electrical conductivity of PVA solution. In addition, increasing zinc citrate results in a smaller diameter of nanofibers that reaches below 100 nm. According to the antibacterial test results, increasing zinc citrate enlarges the inhibition zone of S. aureus but only has a bacteriostatic effect against E. coli. Finally, cell adhesion test results indicate that all nanofiber mats have satisfactory cell attachment regardless of the content of zinc citrate.

  4. A Markov Random Field Model-Based Approach to Natural Image Matting

    Institute of Scientific and Technical Information of China (English)

    Sheng-You Lin; Jiao-Ying Shi

    2007-01-01

    This paper proposes a Markov Random Field (MRF) model-based approach to natural image matting with complex scenes.After the trimap for matting is given manually, the unknown region is roughly segmented into several joint sub-regions.In each sub-region, we partition the colors of neighboring background or foreground pixels into several clusters in RGB color space and assign matting label to each unknown pixel.All the labels are modelled as an MRF and the matting problem is then formulated as a maximum a posteriori (MAP) estimation problem.Simulated annealing is used to find the optimal MAP estimation.The better results can be obtained under the same user-interactions when images are complex.Results of natural image matting experiments performed on complex images using this approach are shown and compared in this paper.

  5. Changing Microspatial Patterns of Sulfate-Reducing Microorganisms (SRM during Cycling of Marine Stromatolite Mats

    Directory of Open Access Journals (Sweden)

    Alexandru I. Petrisor

    2014-01-01

    Full Text Available Microspatial arrangements of sulfate-reducing microorganisms (SRM in surface microbial mats (~1.5 mm forming open marine stromatolites were investigated. Previous research revealed three different mat types associated with these stromatolites, each with a unique petrographic signature. Here we focused on comparing “non-lithifying” (Type-1 and “lithifying” (Type-2 mats. Our results revealed three major trends: (1 Molecular typing using the dsrA probe revealed a shift in the SRM community composition between Type-1 and Type-2 mats. Fluorescence in-situ hybridization (FISH coupled to confocal scanning-laser microscopy (CSLM-based image analyses, and 35SO42−-silver foil patterns showed that SRM were present in surfaces of both mat types, but in significantly (p < 0.05 higher abundances in Type-2 mats. Over 85% of SRM cells in the top 0.5 mm of Type-2 mats were contained in a dense 130 µm thick horizontal layer comprised of clusters of varying sizes; (2 Microspatial mapping revealed that locations of SRM and CaCO3 precipitation were significantly correlated (p < 0.05; (3 Extracts from Type-2 mats contained acylhomoserine-lactones (C4- ,C6- ,oxo-C6,C7- ,C8- ,C10- ,C12- , C14-AHLs involved in cell-cell communication. Similar AHLs were produced by SRM mat-isolates. These trends suggest that development of a microspatially-organized SRM community is closely-associated with the hallmark transition of stromatolite surface mats from a non-lithifying to a lithifying state.

  6. Identification of Leptospira spp. carriers among seroreactive goats and sheep by polymerase chain reaction.

    Science.gov (United States)

    Lilenbaum, W; Varges, R; Ristow, P; Cortez, A; Souza, S O; Richtzenhain, L J; Vasconcellos, S A

    2009-08-01

    Few studies were conducted on the diagnosis and control of small ruminants' leptospirosis. Thirteen goat herds and seven sheep flocks located in the state of Rio de Janeiro, Brazil, were screened for leptospirosis. From the three herds and three flocks with greatest seroreactivity by MAT (Microscopic Agglutination Test), 19 and 40 seropositive goats and sheep, respectively, were selected, and urine samples were collected for bacteriology and PCR. For both species of animals, the most prevalent reactions were due to serogroups Sejroe and Shermani. Although leptospires were observed by darkfield microscopy in eight samples, pure isolates were obtained by bacteriological culture from only two samples. However, twelve urine samples (six goats and six sheep) were positive by PCR. Based on these findings, we consider that the combined use of MAT as a screening test followed by urine PCR for the direct detection of Leptospira spp. DNA was adequate for the identification of carrier animals among goats and sheep. These are valuable tools for the control of leptospirosis in small ruminants.

  7. Seroprevalence and risk factors of antibodies against Leptospira spp. in ovines from Uberlândia municipality, Minas Gerais state, Brazil

    Directory of Open Access Journals (Sweden)

    Sandra R.S. Salaberry

    2011-12-01

    Full Text Available The objectives of the present study were to verify the seroprevalence of anti-Leptospira spp. antibodies, identify the most frequent serovars and the risk factors associated with the infection in Uberlândia, Minas Gerais, Brazil . A total of 334 ovines blood samples were collected in 12 farms from Uberlândia municipality to be evaluated by means the Microscopic Agglutination Test (MAT against 22 serovars of Leptospira spp. and an epidemiologic questionnaire was applied for each farm in order to correlate with risk factors of leptospirosis: sex, age and breed as well as contact with cattle, contact with dogs and presence of rodents. The prevalence of seropositive to MAT was found in seventy four ovines (22.2%; CI 95% 17.6-26.4%, with titers ranging from 100 to 3200. The most frequent serovars identified were: Hardjo, Autumnalis, Hardjo and Wolffi association and Grippotyphosa. Statistically significant differences were found in males, pure breeds and presence of rodents (p<0.05. The prevalence of anti-Leptospira spp. antibodies found in the present study demonstrated that this bacterium occurs in ovines of Uberlândia municipality, MG, Brazil . The need for the adoption of efficient management for the control of rodents and infection in ovines in order to avoid leptospirosis in the local flocks and future transmission to humans.

  8.   The fungus Trichoderma spp. on vegetables

    DEFF Research Database (Denmark)

    Winding, Anne

      The fungus Trichoderma spp. on vegetables   Anne Winding, National Environmental Research Institute, Roskilde, AU   Trichoderma spp. is a naturally occurring fungus in soil and T. harzianum is an active ingredient in microbial pest control agents (MPCA) active against root pathogenic fungi....... The MPCA is administered to the plants by watering. The fungus establishes in the root zone and exerts its beneficial effect by general increase of resistance against pathogenic fungi. The natural occurrence of Trichoderma spp. and the fate and survival of the introduced T. harzianum on vegetables...

  9. SEROLOGICAL AND MOLECULAR SURVEY OF Leptospira spp. AMONG CART HORSES FROM AN ENDEMIC AREA OF HUMAN LEPTOSPIROSIS IN CURITIBA, SOUTHERN BRAZIL

    Directory of Open Access Journals (Sweden)

    Mariane Angélica Finger

    2014-12-01

    Full Text Available Introduction: Cart horses are a re-emerging population employed to carry recyclable material in cities. Methods: Sixty-two horses were sampled in an endemic area of human leptospirosis. The microscopic agglutination test (MAT and real-time polymerase chain reaction (qPCR were performed. Results: A seropositivity of 75.8% with serovar Icterohaemorrhagiae in 80.8% of the horses was observed. Blood and urine were qPCR negative. MAT showed positive correlations with rainfall (p = 0.02 and flooding (p = 0.03. Conclusions: Although horses may be constantly exposed to Leptospira spp. in the environment mostly because of rainfall and flooding, no leptospiremia or leptospiruria were observed in this study.

  10. 21 CFR 866.3550 - Salmonella spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Salmonella spp. serological reagents. 866.3550... spp. serological reagents. (a) Identification. Salmonella spp. serological reagents are devices that consist of antigens and antisera used in serological tests to identify Salmonella spp. from...

  11. Modification of PLGA Nanofibrous Mats by Electron Beam Irradiation for Soft Tissue Regeneration

    Directory of Open Access Journals (Sweden)

    Jae Baek Lee

    2015-01-01

    Full Text Available Biodegradable poly(lactide-co-glycolide (PLGA has found widespread use in modern medical practice. However, the degradation rate of PLGA should be adjusted for specific biomedical applications such as tissue engineering, drug delivery, and surgical implantation. This study focused on the effect of electron beam radiation on nanofibrous PLGA mats in terms of physical properties and degradation behavior with cell proliferation. PLGA nanofiber mats were prepared by electrospinning, and electron beam was irradiated at doses of 50, 100, 150, 200, 250, and 300 kGy. PLGA mats showed dimensional integrity after electron beam irradiation without change of fiber diameter. The degradation behavior of a control PLGA nanofiber (0 kGy and electron beam-irradiated PLGA nanofibers was analyzed by measuring the molecular weight, weight loss, change of chemical structure, and fibrous morphology. The molecular weight of the PLGA nanofibers decreased with increasing electron beam radiation dose. The mechanical properties of the PLGA nanofibrous mats were decreased with increasing electron beam irradiation dose. Cell proliferation behavior on all electron beam irradiated PLGA mats was similar to the control PLGA mats. Electron beam irradiation of PLGA nanofibrous mats is a potentially useful approach for modulating the biodegradation rate of tissue-specific nonwoven nanofibrous scaffolds, specifically for soft tissue engineering applications.

  12. The micromorphology of Younger Dryas-aged black mats from Nevada, Arizona, Texas and New Mexico

    Science.gov (United States)

    Harris-Parks, Erin

    2016-01-01

    Black mats are organic-rich sediments and soils that form in wet environments associated with spring discharge. Micromorphological and geochemical analyses of 25 black mats dating to the Younger Dryas Chronozone (12.9-11.7 ka) and early Holocene were conducted to determine their composition and depositional environment. Samples were collected from Arizona, New Mexico, Texas and Nevada. Micromorphological analyses were conducted on thin sections using polarized and blue fluorescent light. These analyses determined that black mats contain humic acids, fine (5-20 μm) plant fragments, diatoms, phytoliths, and gastropods. The dominant type of organic matter in black mats is derived from herbaceous plants, contradicting previous studies that supported algal or charcoal sources. Differences in the micromorphological characteristics of the samples revealed that black mats formed as three different types, organic horizons, moist soils and, ponded sediments, depending on their topographic position in relation to the water table. The microscopic evidence found in black mats supports the presence of widespread wet environments in Nevada and Arizona during the Younger Dryas Chronozone, clearly indicating a sustained period of greater effective moisture, optimal for spring discharge and black mat formation.

  13. Fabrication and Characterization of Thermoresponsive Polystyrene Nanofibrous Mats for Cultured Cell Recovery

    Science.gov (United States)

    Oh, Hwan Hee; Uyama, Hiroshi; Park, Won Ho; Cho, Donghwan; Kwon, Oh Hyeong

    2014-01-01

    Rapid cell growth and rapid recovery of intact cultured cells are an invaluable technique to maintain the biological functions and viability of cells. To achieve this goal, thermoresponsive polystyrene (PS) nanofibrous mat was fabricated by electrospinning of PS solution, followed by the graft polymerization of thermoresponsive poly(N-isopropylacrylamide)(PIPAAm) on PS nanofibrous mats. Image analysis of the PS nanofiber revealed a unimodal distribution pattern with 400 nm average fiber diameter. Graft polymerization of PIPAAm on PS nanofibrous mats was confirmed by spectroscopic methods such as ATR-FTIR, ESCA, and AFM. Human fibroblasts were cultured on four different surfaces, PIPAAm-grafted and ungrafted PS dishes and PIPAAm-grafted and ungrafted PS nanofibrous mats, respectively. Cells on PIPAAm-grafted PS nanofibrous mats were well attached, spread, and proliferated significantly much more than those on other surfaces. Cultured cells were easily detached from the PIPAAm-grafted surfaces by decreasing culture temperature to 20°C, while negligible cells were detached from ungrafted surfaces. Moreover, cells on PIPAAm-grafted PS nanofibrous mats were detached more rapidly than those on PIPAAm-grafted PS dishes. These results suggest that thermoresponsive nanofibrous mats are attractive cell culture substrates which enable rapid cell growth and recovery from the culture surface for application to tissue engineering and regenerative medicine. PMID:24696851

  14. Antimicrobial Activity of Silver Ions Released from Zeolites Immobilized on Cellulose Nanofiber Mats.

    Science.gov (United States)

    Rieger, Katrina A; Cho, Hong Je; Yeung, Hiu Fai; Fan, Wei; Schiffman, Jessica D

    2016-02-10

    In this study, we exploit the high silver ion exchange capability of Linde Type A (LTA) zeolites and present, for the first time, electrospun nanofiber mats decorated with in-house synthesized silver (Ag(+)) ion exchanged zeolites that function as molecular delivery vehicles. LTA-Large zeolites with a particle size of 6.0 μm were grown on the surface of the cellulose nanofiber mats, whereas LTA-Small zeolites (0.2 μm) and three-dimensionally ordered mesoporous-imprinted (LTA-Meso) zeolites (0.5 μm) were attached to the surface of the cellulose nanofiber mats postsynthesis. After the three zeolite/nanofiber mat assemblies were ion-exchanged with Ag(+) ions, their ion release profiles and ability to inactivate Escherichia coli (E. coli) K12 were evaluated as a function of time. LTA-Large zeolites immobilized on the nanofiber mats displayed more than an 11 times greater E. coli K12 inactivation than the Ag-LTA-Large zeolites that were not immobilized on the nanofiber mats. This study demonstrates that by decorating nanometer to micrometer scale Ag(+) ion-exchanged zeolites on the surface of high porosity, hydrophilic cellulose nanofiber mats, we can achieve a tunable release of Ag(+) ions that inactivate bacteria faster and are more practical to use in applications over powder zeolites.

  15. Cantera Integration with the Toolbox for Modeling and Analysis of Thermodynamic Systems (T-MATS)

    Science.gov (United States)

    Lavelle, Thomas M.; Chapman, Jeffryes W.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei

    2014-01-01

    NASA Glenn Research Center (GRC) has recently developed a software package for modeling generic thermodynamic systems called the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS). T-MATS is a library of building blocks that can be assembled to represent any thermodynamic system in the Simulink (The MathWorks, Inc.) environment. These elements, along with a Newton Raphson solver (also provided as part of the T-MATS package), enable users to create models of a wide variety of systems. The current version of T-MATS (v1.0.1) uses tabular data for providing information about a specific mixture of air, water (humidity), and hydrocarbon fuel in calculations of thermodynamic properties. The capabilities of T-MATS can be expanded by integrating it with the Cantera thermodynamic package. Cantera is an object-oriented analysis package that calculates thermodynamic solutions for any mixture defined by the user. Integration of Cantera with T-MATS extends the range of systems that may be modeled using the toolbox. In addition, the library of elements released with Cantera were developed using MATLAB native M-files, allowing for quicker prototyping of elements. This paper discusses how the new Cantera-based elements are created and provides examples for using T-MATS integrated with Cantera.

  16. The Ububele Baby Mat intervention: facilitating meaning in a multi-cultural context.

    Science.gov (United States)

    Nortje, Michelle

    2016-07-01

    This paper expands on the continuing understanding of the Ububele Baby Mat Project - a community-based parent-infant mental health intervention now offered at six primary healthcare clinics in Alexandra, Johannesburg. This paper describes the influence of cultural diversity and the complex layers of meaning-making involved in the Baby Mat intervention. Meaning-making is a collaborative process between the caregiver-infant dyad's cultural beliefs and experiences, the Baby Mat couple's relationship, knowledge and skills, and the additional minds of the multicultural supervision group. This paper aims to clarify these three layers of co-constructed meaning-making involved in the Baby Mat intervention. Three central themes are thus presented to discuss the impact of multi-cultural, multi-racial and multi-lingual therapeutic dyads on the process of the Baby Mat intervention. These core themes are the verbal and non-verbal meanings of presenting problems brought by caregiver-infant dyads; the value and obstacles involved within a cross-cultural baby mat couple; and the significance of a reflective group supervision space. Case extracts are used to illustrate these processes of multiple minds at play during a Baby Mat session.

  17. Geochemical Characteristics and Origin of Tar Mats from the Yaha Field in Tarim Basin,China

    Institute of Scientific and Technical Information of China (English)

    张敏; 张俊; 等

    1999-01-01

    Tar mats were firstly discovered and determined accurately in terrestrial oil and gas reservoirs associated with Lower Tertiary sandstone reservoirs in the Yaha field of the Tarim Basin,China,by thin-layer chromatography-flame ionization detector(TLC-FID)and Rock-Eval analysis.The relative content of asphaltene in gross composition of tar mat extracts accounts for more than 30%,that in the corresponding oil leg less than 20%.In the geochemical description profile of oil gas reservoirs,drastic changes in asphaltene contents between tar mats and oil legs could be discovered.This in an important marker to determine tar mats.Distribution characteristics of saturated and aromaic hydrocarbons from reservoir core extracts and crude oils in the Yaha oil and gas reservoirs in the Tarim Basin are described systematically in this paper,and the results show there are similarities among n-alkane distribution characteristics,biomarker distribution characteristics and their combined characteristics of saturated hydrocarbons,and the geochemical characteristics of aromatic hydrocarbons for tar mats.oil leg,asphaltic sand and crude oil.These characteristics suggest the hydrocarbons in these samples were originated from the common source rocks.However,the geochemical characteristics of tar mats reveales that the mechanism of formation of tar mats is the precipitation of asphaltene from crude oils in petroleum reservoirs caused by increased dissolved gas in oil legs(gas injection).

  18. Fermentability of an enzymatically modified solubilised potato polysaccharide (SPP)

    DEFF Research Database (Denmark)

    Olesen, M.; Gudmand-Høyer, E.; Bergsøe, Merete Norsker;

    1998-01-01

    : Seven healthy volunteers ingested in random order on seven different days: 20 g SPP; bread made of 180 g wheat flour served with 20 g raw SPP; bread baked of 180 g wheat flour and 20 g SPP; bread made from 180 g what flour; 20 g lactulose; 20 g oat bran; and 20 g wheat bran. The hydrogen breath test...... of a meal. CONCLUSIONS: SPP is a fermentable, highly concentrated soluble fibre source. Baking SPP did not interfere with the fermentable properties. Thus, SPP may be interesting as a fibre-supplement in fibre-poor diets. The change in oro-coecal transit time for SPP, depending on the composition...

  19. Evolution of Mat Strength from the Paleoarchean to the Modern: A Record of Evolving Microbial Communities?

    Science.gov (United States)

    Tice, M.; Pope, M.; Thornton, D.

    2011-12-01

    Fossil microbial mats, i.e. surface-attached communities of benthic microorganisms, form the most extensive record of life on Earth. Qualitatively changing mat morphologies from 3.43-0.56-billion-years-ago may reflect the evolution of microorganism communities or changing environmental conditions. However, mat morphogenesis is not well understood or easily quantifiable, making interpretation of the mat record difficult. We show that microbial mat cohesion increased from ~1 Pa to ~13 Pa at 2.7-billion-years-ago (Ga), and has remained high for most of the rest of Earth history. This initial increase may represent an early increase in the productivity of mat communities, a change in the composition of extracellular polymeric substances (EPS) produced by mat-formers, or a change in the composition of seawater affecting EPS strength. The appearance of early high-strength communities was coincident with the appearance of voids representing gas bubbles in the apices of conical stromatolites; together, these changes may record the emergence of productive mat communities dominated by oxygenic cyanobacteria. The earliest high-strength communities, like early bubble-forming conical stromatolites, grew in low-energy environments. The appearance of high-strength communities in shallow-water environments starting 2.63-2.52 Ga coincided with the appearance of the first barrier reef complexes. We hypothesize that the first oxygenic cyanobacteria were most competitive with anoxygenic phototrophs in diffusion-limited environments. As the cyanobacteria became more proficient at oxygenic photosynthesis, they eventually outcompeted anoxygenic phototrophs in higher-energy environments. Competition with higher strength seaweed and grazing by metazoans has displaced mat communities from essentially all modern high-energy niches.

  20. IMPORTANCE OF ARCOBACTER SPP. IN POULTRY MEAT

    OpenAIRE

    Ertaş, Necla

    2009-01-01

    The genus Arcobacter, previously known as aerotolerant Campylobacters were isolated from aborted bovine and porcine fetuses. Arcobacter spp. differ from Campylobacter spp. by their ability to grow at lower temperatures and in air. The genus Arcobacter comprises six species. Arcobacter nitrofigilis, Arcobacter halophilus and Arcobacter sulfidicus are environmental-related species. No association with human or animal infection has been reported. The other species, Arcobacter butzleri,Arcobacter...

  1. Differentiation of Phytopathogenic Agrobacterium spp.

    Directory of Open Access Journals (Sweden)

    Nemanja Kuzmanović

    2011-01-01

    Full Text Available Due to the difficulties in differentiation of phytopathogenic Agrobacterium spp. and lack of a standardized protocol, we carried out selection and evaluation of suitable methods based on the bacterial physiological, genetic and pathogenic properties. Strains of Agrobacterium tumefaciens, A. rhizogenes and A. vitis were differentiated using standard bacteriological and molecular methods. The biochemical and physiological tests confirmed authenticity of the strains. Two duplex PCR methods were conducted with four different primer pairs. In all strains, presence of plasmid virD2 and virC pathogenicity genes was detected. Chromosomal pehA gene was determined in A. vitis strain. Pathogenicity was confirmed on carrot slices and young plants of tomato and sunflower. Strains of A. tumefaciens and A. vitis were pathogenic on all test plants, while strain of A. rhizogenes induced characteristic symptoms only on carrot slices. The tests used in this study provided reliable discrimination between the three species and confirmed their identity as tumorigenic (TiAgrobacterium tumefaciens and A. vitis, and rhizogenic (Ri A. rhizogenes.

  2. Genetic manipulation of Methanosarcina spp.

    Directory of Open Access Journals (Sweden)

    Petra Regine Adelheid Kohler

    2012-07-01

    Full Text Available The discovery of the third domain of life, the Archaea, is one of the most exciting findings of the last century. These remarkable prokaryotes are well known for their adaptations to extreme environments; however, Archaea have also conquered moderate environments. Many of the archaeal biochemical processes, such as methane production, are unique in nature and therefore of great scientific interest. Although formerly restricted to biochemical and physiological studies, sophisticated systems for genetic manipulation have been developed during the last two decades for methanogenic archaea, halophilic archaea and thermophilic, sulfur-metabolizing archaea. The availability of these tools has allowed for more complete studies of archaeal physiology and metabolism and most importantly provides the basis for the investigation of gene expression, regulation and function. In this review we provide an overview of methods for genetic manipulation of Methanosarcina spp., a group of methanogenic archaea that are key players in the global carbon cycle and which can be found in a variety of anaerobic environments.

  3. Microbial Mats on the Orkney Islands Revisited: Microenvironment and Microbial Community Composition

    DEFF Research Database (Denmark)

    Wieland, A.; Kühl, M.; McGowan, L.;

    2003-01-01

    and microalgae in mats from Waulkmill and Swanbister beach, including diatoms, Haptophyceae, cyanobacteria, and sulfate-reducing bacteria. These analyses also indicated the presence of methanogens, especially in Swanbister beach mats, and therefore a possible role of methanogenesis for the carbon cycle...... fragment length polymorphism) analysis in Swanbister beach mats, the depth distribution of different populations of purple and sulfate-reducing bacteria could be related to the microenvironmental conditions. Oxygen, but also sulfide and other (inorganic and organic) sulfur compounds, seems to play...

  4. Electrospun nano-fibre mats with antibacterial properties from quaternised chitosan and poly(vinyl alcohol).

    Science.gov (United States)

    Ignatova, Milena; Starbova, Kirilka; Markova, Nadya; Manolova, Nevena; Rashkov, Iliya

    2006-09-04

    Nano-fibres containing quaternised chitosan (QCh) have been successfully prepared by electrospinning of QCh solutions mixed with poly(vinyl alcohol) (PVA). The average fibre diameter is in the range of 60-200 nm. UV irradiation of the composite electrospun nano-fibrous mats containing triethylene glycol diacrylate as cross-linking agent has resulted in stabilising of the nano-fibres against disintegration in water or water vapours. Microbiological screening has demonstrated the antibacterial activity of the photo-cross-linked electrospun mats against Staphylococcus aureus and Escherichia coli. The obtained nano-fibrous electrospun mats are promising for wound-healing applications.

  5. Contribution à la conductivité thermique d'un matériau composite

    OpenAIRE

    2011-01-01

    International audience; L'adjonction des fonctions dans les matériaux composites est un atout majeur pour élargir leurs applications dans le monde industriel. En effet, l'industrie navale s'intéresse aux matériaux composites pour réduire notamment la masse mais cette solution n'offre pas de protection électromagnétique suffisante. Il est alors nécessaire d'ajouter la fonction de blindage à ces matériaux composites pendant la phase de fabrication. De même, l'industrie aéronautique est égalemen...

  6. Prevalence and risk factors for Leptospira spp. in cattle herds in the south central region of Paraná state

    Directory of Open Access Journals (Sweden)

    Vanessa Y Hashimoto

    2012-02-01

    Full Text Available The aim of this study was to determine the prevalence of anti-Leptospira spp. antibodies and the risk factors for Leptospira spp. infection in breeding cattle herds in the south central region of Paraná state. It was based on the statistic delineation/serological samples and information regarding the selected farms employed in the study of bovine brucellosis for Paraná state in the context of National Program for Control and Eradication of Brucellosis and Tuberculosis. A total of 1.880 females aged >24 months from 274 non vaccinated herds were studied. Serum samples were tested for antibodies against Leptospira spp. using microscopic agglutination test (MAT with 22 Leptospira serovars. The epidemiological questionnaire was applied on all the selected farms and aimed to obtain epidemiological data. Hundred eighty one of 274 herds were positive for Leptospira spp./presenting prevalence of positive herds of 66.06% (IC95%=60.12-71,65%. Presence of >43 cattle (OR=3.120; IC=1.418-6.867/animal purchase (OR=2.010; IC=1.154-3.500/rent of pastures (OR=2.925; IC=1.060-8.068 and presence of maternity paddock (OR=1.981; IC=1,068-3,676 were identified as risk factors for leptospirosis due to any serovar in the multivariate logistic regression. Risk factors for leptospirosis due to serovar Hardjo were presence of >43 cattle (OR=3.622; IC=1.512-8,677/animal purchase (OR=3.143; IC=1.557-6.342/rent of pastures (OR=4.070; IC=1.370-12.087 and presence of horses (OR=2.981; IC=1.321-6.726. These results indicate that Leptospira spp. infection is widespread in the south central region of Paraná state and that factors related to the herd characteristic and management are associated with the infection.

  7. Towards in-trap-spectroscopy at MATS/FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Weber, Christine; Moazzami-Fallah, Jasmin; Mueller, Peter; Szerypo, Jurek; Thirolf, Peter [Fakultaet fuer Physik, LMU - Muenchen, 85748 Garching (Germany)

    2012-07-01

    A novel in-trap spectroscopy setup is developed at MLLTRAP/Garching to be implemented in the future MATS facility at FAIR/GSI. It combines the high-resolution purification capabilities of a Penning trap with a customized detector trap setup, providing both, storage and detection. In this way, decay-spectroscopy experiments of purified nuclides, free from any background or scattering effects, will become feasible. Here, the main trapping electrodes are replaced by position-sensitive Si-strip detectors and emitted electrons are efficiently guided by the strong field of the trap magnet towards distant electron detectors. Possible experiments are conversion-electron spectroscopy and intrap {alpha}-decay experiments of heavy actinides. Moreover, a coincident detection of an {alpha} decay with an electron detection allows to reconstruct the original positions of electron clouds initiated by shake-off as well as from subsequent conversion decay. Via this decay length, the half-lives of excited (2{sup +}) states populated by {alpha} decay can be derived in a unique type of recoil-distance method. In this presentation, possible physics experiments and the design of the setup are presented.

  8. Optimization of DNA Extractions from Iron-rich Microbial Mats

    Science.gov (United States)

    Fullerton, H.; Hilton, T. S.; Moyer, C. L.

    2013-12-01

    Iron is the fourth most abundant element in the Earth's crust and is potentially one of the most abundant energy sources on the earth as an electron donor for chemolithoautotrophicgrowth coupled to Fe(II) oxidation. Many microbes have adapted to this energy source. One such bacterial class are the Zetaproteobacteria, which dominate Iron-rich microbial mats at Loihi seamount. Although cell counts are very high (up to 5.3x108 cells/ml), efficient DNA yields are low in comparison. In this study we compared extraction efficiency across different methods and with the addition of various buffers. Regardless of protocol (i.e., kit), the addition of sodium citrate drastically increased the DNA yield. The addition of sodium citrate did not alter community structure as determined by T-RFLP and qPCR. Citrate is a well-known ferric iron chelator and will bind ferrous as well. The chelated iron is then unable to participate in the Fenton reaction and this stops the generation of hydroxyl radicals which in turn can react and degrade the extracted DNA. We have utilized this relationship to allow us to obtain nearly an order of magnitude more microbial community DNA per sample, which should also have implications when processing low biomass samples, e.g., from the deep subsurface.

  9. Possible evolution of mobile animals in association with microbial mats

    Science.gov (United States)

    Gingras, Murray; Hagadorn, James W.; Seilacher, Adolf; Lalonde, Stefan V.; Pecoits, Ernesto; Petrash, Daniel; Konhauser, Kurt O.

    2011-06-01

    Complex animals first evolved during the Ediacaran period, between 635 and 542 million years ago, when the oceans were just becoming fully oxygenated. In situ fossils of the mobile forms of these animals are associated with microbial sedimentary structures, and the animal's trace fossils generally were formed parallel to the surface of the seabed, at or below the sediment-water interface. This evidence suggests the earliest mobile animals inhabited settings with high microbial populations, and may have mined microbially bound sediments for food resources. Here we report the association of mobile animals--insect larvae, oligochaetes and burrowing shore crabs--with microbial mats in a modern hypersaline lagoon in Venezuela. The lagoon is characterized by low concentrations of dissolved O2 and pervasive biomats dominated by oxygen-producing cyanobacteria, both analogous to conditions during the Ediacaran. We find that, during the day, O2 levels in the biomats are four times higher than in the overlying water column. We therefore conclude that the animals harvest both food and O2 from the biomats. In doing so, the animals produce horizontal burrows similar to those found in Ediacaran-aged rocks. We suggest that early mobile animals may have evolved in similar environments during the Ediacaran, effectively exploiting oases rich in O2 that formed within low oxygen settings.

  10. Drying Spirulina with Foam Mat Drying at Medium Temperature

    Directory of Open Access Journals (Sweden)

    Aji Prasetyaningrum

    2012-10-01

    Full Text Available Spirulina is a single cell blue green microalgae (Cyanobacteria containing many Phytonutrients (Beta-carotene, Chlorophyl, Xanthophyl, Phyocianin using as anti-carcinogen in food. Producing dry spirulina by quick drying process at medium temperature is very important to retain the Phytonutrient quality. Currently, the work is still challenging due to the gel formation that block the water diffusion from inside to the surface.  This research studies the performance of foam-mat drying on production of dry spirulina. In this method the spirulina was mixed with foaming agent (glair/egg albumen, popular as white egg at 2.5% by weight at air velocity 2.2 m/sec. Here, the effect of spirulina thickness and operational temperature on drying time and quality (Beta-carotene and color were observed. The drying time was estimated based on the measurement of water content in spirulina versus time. Result showed that the thicker spirulina, the longer drying time. Conversely, the higher operational temperature, faster drying time. At thickness ranging 1-3 mm and operational temperature below 70oC, the quality of spirulina can fit the market requirement

  11. Efficient quality enhancement of disparity maps based on alpha matting

    Science.gov (United States)

    Brosch, Nicole; Nezveda, Matej; Gelautz, Margrit; Seitner, Florian

    2014-03-01

    We propose an efficient disparity map enhancement method that improves the alignment of disparity edges and color edges even in the presence of mixed pixels and provides alpha values for pixels at disparity edges as a byproduct. In contrast to previous publications, the proposed method addresses mixed pixels at disparity edges and does not introduce mixed disparities that can lead to object deformations in synthesized views. The proposed algorithm computes transparencies by performing alpha matting per disparity-layer. These alpha values indicate the degree of affiliation to a disparity-layer and can hence be used as an indicator for a disparity reassignment that aligns disparity edges with color edges and accounts for mixed pixels. We demonstrate the capabilities of the proposed method on various images and corresponding disparity maps, including images that contain fuzzy object borders (e.g., fur). Furthermore, the proposed method is qualitatively and quantitatively evaluated using disparity ground truth and compared to previously published disparity post-processing methods.

  12. Collimation and material science studies (ColMat) at GSI.

    CERN Document Server

    Stadlmann, J; Kollmus, H; Krause, M; Mustafin, E; Petzenhauser, I; Spiller, P; Strasik, I; Tahir, N; Tomut, M; Trautmann, C

    2010-01-01

    Within the frame of the EuCARD program, the GSI Helmholtzzentrum für Schwerionenforschung in Darmstadt is performing accelerator R&D in workpackage 8: ColMat. The coordinated effort is focussed on materials aspects important for building the FAIR accelerator facility at GSI and the LHC upgrade at CERN. Accelerator components and especially protection devices have to be operated in high dose environments. The radiation hazard occurs either by the primary proton and ion beams or the secondary radiation after initial beam loss. Detailed numerical simulations have been carried out to study the damage caused to solid targets by the full impact of the LHC beam as well as the SPS beam. Tungsten, copper and graphite as possible collimator materials have been studied. Experimental an theoretical studies on radiation damage on materials used for the LHC upgrade and the FAIR accelerators are performed at the present GSI experimental facilities. Technical decisions based on these results will have an impact on the F...

  13. Laser cleaning of 19th century Congo rattan mats

    Science.gov (United States)

    Carmona, N.; Oujja, M.; Roemich, H.; Castillejo, M.

    2011-09-01

    There is a growing interest by art conservators for laser cleaning of organic materials, such as wooden artworks, paper and textiles, since traditional cleaning with solvents can be a source of further decay and mechanical cleaning may be too abrasive for sensitive fibers. In this work we present a successful laser cleaning approach for 19th century rattan mats from the Brooklyn Museum collection of African Art, now part of the study collection at the Conservation Center in New York. Tests were carried out using the fundamental (1064 nm) and second harmonic (532 nm) wavelength of a Q-switched Nd:YAG laser to measure threshold values both for surface damage and color changes for different types of rattan samples. The irradiated substrates were investigated by optical microscopy, scanning electron microscopy and by UV-vis spectroscopy in order to determine the efficiency of laser cleaning and to assess possible deterioration effects that may have occurred as a result of laser irradiation. The study showed that by using the laser emission at 532 nm, a wavelength for which photon energy is below the bond dissociation level of the main cellulosic compounds and the water absorption is negligible, it is possible to select a range of laser fluences to remove the black dust layer without damaging the rattan material.

  14. Laser cleaning of 19th century Congo rattan mats

    Energy Technology Data Exchange (ETDEWEB)

    Carmona, N., E-mail: carmona@fis.ucm.es [Materials Physics Department, Complutense University at Madrid, Avda. Complutense sn, 28040 Madrid (Spain); Oujja, M. [Instituto de Quimica Fisica ' Rocasolano' , C/Serrano 119, 28006 Madrid (Spain); Roemich, H. [Conservation Center, Institute of Fine Arts, New York University, 14 East 78th Street, 10075 New York (United States); Castillejo, M. [Instituto de Quimica Fisica ' Rocasolano' , C/Serrano 119, 28006 Madrid (Spain)

    2011-09-15

    There is a growing interest by art conservators for laser cleaning of organic materials, such as wooden artworks, paper and textiles, since traditional cleaning with solvents can be a source of further decay and mechanical cleaning may be too abrasive for sensitive fibers. In this work we present a successful laser cleaning approach for 19th century rattan mats from the Brooklyn Museum collection of African Art, now part of the study collection at the Conservation Center in New York. Tests were carried out using the fundamental (1064 nm) and second harmonic (532 nm) wavelength of a Q-switched Nd:YAG laser to measure threshold values both for surface damage and color changes for different types of rattan samples. The irradiated substrates were investigated by optical microscopy, scanning electron microscopy and by UV-vis spectroscopy in order to determine the efficiency of laser cleaning and to assess possible deterioration effects that may have occurred as a result of laser irradiation. The study showed that by using the laser emission at 532 nm, a wavelength for which photon energy is below the bond dissociation level of the main cellulosic compounds and the water absorption is negligible, it is possible to select a range of laser fluences to remove the black dust layer without damaging the rattan material.

  15. Hydrogel-Electrospun Fiber Mat Composite Coatings for Neural Prostheses

    Directory of Open Access Journals (Sweden)

    Ning eHan

    2011-03-01

    Full Text Available Achieving stable, long-term performance of implanted neural prosthetic devices has been challenging because of implantation related neuron loss and a foreign body response that results in encapsulating glial scar formation. To improve neuron-prosthesis integration and form chronic, stable interfaces, we investigated the potential of neurotrophin-eluting hydrogel-electrospun fiber mat (EFM composite coatings. In particular, poly(ethylene glycol-poly(ε-caprolactone (PEGPCL hydrogel- poly(ε-caprolactone (PCL EFM composites were applied as coatings for multielectrode arrays (MEAs. Coatings were stable and persisted on electrode surfaces for over 1 month under an agarose gel tissue phantom and over 9 months in a PBS immersion bath. To demonstrate drug release, a neurotrophin, nerve growth factor (NGF, was loaded in the PEGPCL hydrogel layer, and coating cytotoxicity and sustained NGF release were evaluated using a PC12 cell culture model. Quantitative MTT assays showed that these coatings had no significant toxicity toward PC12 cells, and neurite extension at day 7 and 14 confirmed sustained release of NGF at biologically significant concentrations for at least 2 weeks. Our results demonstrate that hydrogel-EFM composite materials can be applied to neural prostheses as a means to improve neuron-electrode proximity and enhance long-term device performance and function.

  16. [Obtainment of pineapple juice powder by foam-mat drying].

    Science.gov (United States)

    Beristain, C I; Cortés, R; Casillas, M A; Díaz, R

    1991-06-01

    The foam-mat production and stability using pineapple juice concentrate (25, 30 and 40 degrees Brix), adding a surfactants mixture and maltodextrin (DE 10) as co-adjuvant, stirred in a commercial mixer, was studied. Adequate foam formation conditions were as follows: concentrate of 25 degrees Brix using surface active agents (Sorbac 60-Polisorbac 80) 0.285% surface active agent/total solids, HLB = 6, and stirring time, 7 min. The foam was dehydrated in an oven dried with a horizontal air flow circulation set at 60, 70 and 80 degrees C using 3, 5 and 10 mm bed depths. The best conditions were obtained at 60 degrees C and 5 mm bed depth. The product had a particle size of sieve 40-80, and a moisture content of 3%. It was then packaged in multilayer plastic film and stored at environmental conditions. No brown color formation or mold growth was detected during storage. Pineapple juice and a refreshing drink were prepared. The general acceptability in a community indicated that 95% of the population involved accepted the product.

  17. Soroprevalência de aglutininas anti-Leptospira spp. em ovinos nas Mesorregiões Sudeste e Sudoeste do Estado Rio Grande do Sul, Brasil

    OpenAIRE

    Herrmann Geder Paulo; Lage Andrey Pereira; Moreira Elvio Carlos; Haddad João Paulo Amaral; Resende José Renato de; Rodrigues Rogério Oliveira; Leite Rômulo Cerqueira

    2004-01-01

    A presença de aglutininas anti-Leptospira spp. em 1360 amostras soros de ovinos, clinicamente sadios com mais de um ano de idade, criados extensivamente em 136 fazendas de 18 municípios; 10 na Mesorregião Sudeste e 8 na Mesorregião Sudoeste do Estado do Rio Grande do Sul, entre os meses de janeiro a março de 1999. Foi determinado pela Técnica de Aglutinação Microscópica (MAT), das 1360 amostras de soros testados, 466 (34,26%) animais foram reagentes e os títulos de aglutininas anti-Leptospira...

  18. Occurrence of Babesia spp., Rickettsia spp. and Bartonella spp. in Ixodes ricinus in Bavarian public parks, Germany

    Directory of Open Access Journals (Sweden)

    Mahling Monia

    2011-07-01

    Full Text Available Abstract Background Only limited information is available about the occurrence of ticks and tick-borne pathogens in public parks, which are areas strongly influenced by human beings. For this reason, Ixodes ricinus were collected in public parks of different Bavarian cities in a 2-year survey (2009 and 2010 and screened for DNA of Babesia spp., Rickettsia spp. and Bartonella spp. by PCR. Species identification was performed by sequence analysis and alignment with existing sequences in GenBank. Additionally, coinfections with Anaplasma phagocytophilum were investigated. Results The following prevalences were detected: Babesia spp.: 0.4% (n = 17, including one pool of two larvae in 2009 and 0.5 to 0.7% (n = 11, including one pool of five larvae in 2010; Rickettsia spp.: 6.4 to 7.7% (n = 285, including 16 pools of 76 larvae in 2009. DNA of Bartonella spp. in I. ricinus in Bavarian public parks could not be identified. Sequence analysis revealed the following species: Babesia sp. EU1 (n = 25, B. divergens (n = 1, B. divergens/capreoli (n = 1, B. gibsoni-like (n = 1, R. helvetica (n = 272, R. monacensis IrR/Munich (n = 12 and unspecified R. monacensis (n = 1. The majority of coinfections were R. helvetica with A. phagocytophilum (n = 27, but coinfections between Babesia spp. and A. phagocytophilum, or Babesia spp. and R. helvetica were also detected. Conclusions I. ricinus ticks in urban areas of Germany harbor several tick-borne pathogens and coinfections were also observed. Public parks are of particularly great interest regarding the epidemiology of tick-borne pathogens, because of differences in both the prevalence of pathogens in ticks as well as a varying species arrangement when compared to woodland areas. The record of DNA of a Babesia gibsoni-like pathogen detected in I. ricinus suggests that I. ricinus may harbor and transmit more Babesia spp. than previously known. Because of their high recreational value for human beings, urban green

  19. MatLab Application to the Matrix Deduction of Finite Element Stiffness%MatLab在有限元刚度矩阵推导中的应用

    Institute of Scientific and Technical Information of China (English)

    周水兴; 陈山林

    2007-01-01

    MatLab具有强大的符号运算功能.以平面梁单元刚度矩阵为例,详细介绍MatLab在单元刚度矩阵推导中的具体应用,编写了平面梁单元刚度符号运算程序,运算结果与手工推导完全一致,该方法可进一步推广到其它单元甚至到更复杂非线性单元刚度矩阵推导中.

  20. Molecular Detection of Anaplasma spp. and Ehrlichia spp. in Ruminants from Twelve Provinces of China

    Science.gov (United States)

    Qiu, Haixiang; Kelly, Patrick John; Zhang, Jilei; Luo, Qinghua; Yang, Yi; Mao, Yongjiang; Yang, Zhangping; Li, Jing; Wu, Hongzhuan

    2016-01-01

    Anaplasma spp. and Ehrlichia spp. are tick-transmitted bacteria that are of significant economic importance as they can infect large and small ruminants and also people. There is little information on anaplasmosis and ehrlichiosis in ruminants in China. 16S rRNA FRET-qPCRs were used to screen convenience whole blood samples from 2,240 domestic ruminants in 12 provinces of China for Anaplasma spp. and Ehrlichia spp. Positive samples were further analyzed with a standard PCR for the gltA. Anaplasma spp. DNA was detected in the sheep (11.7%; 13/111), goats (81.8%; 219/270), cattle (13.2%; 241/1,830), and water buffaloes (6.9%; 2/29). Ehrlichia spp. DNA was detected in sheep (1.8%; 2/111), goats (1.1%; 3/270), and cattle (3.6%; 65/1830) but not in water buffaloes (0/29). Sequencing of gltA PCR products showed that A. marginale, A. ovis, Ehrlichia canis, and Ehrlichia sp. (JX629807) were present in ruminants from China, while the 16S rRNA FRET-qPCR sequence data indicated that there might also be A. platys, A. phagocytophilum, Anaplasma sp. BL126-13 (KJ410243), and Anaplasma sp. JC3-6 (KM227012). Our study shows that domestic ruminants from China are not uncommonly infected with a variety of Anaplasma spp. and Ehrlichia spp. PMID:28096822

  1. Halloysite nanotube-based electrospun ceramic nanofibre mat: a novel support for zeolite membranes

    Science.gov (United States)

    Chen, Zhuwen; Zeng, Jiaying; Lv, Dong; Gao, Jinqiang; Zhang, Jian; Bai, Shan; Li, Ruili; Wu, Jingshen

    2016-01-01

    Some key parameters of supports such as porosity, pore shape and size are of great importance for fabrication and performance of zeolite membranes. In this study, we fabricated millimetre-thick, self-standing electrospun ceramic nanofibre mats and employed them as a novel support for zeolite membranes. The nanofibre mats were prepared by electrospinning a halloysite nanotubes/polyvinyl pyrrolidone composite followed by a programmed sintering process. The interwoven nanofibre mats possess up to 80% porosity, narrow pore size distribution, low pore tortuosity and highly interconnected pore structure. Compared with the commercial α-Al2O3 supports prepared by powder compaction and sintering, the halloysite nanotube-based mats (HNMs) show higher flux, better adsorption of zeolite seeds, adhesion of zeolite membranes and lower Al leaching. Four types of zeolite membranes supported on HNMs have been successfully synthesized with either in situ crystallization or a secondary growth method, demonstrating good universality of HNMs for supporting zeolite membranes. PMID:28083098

  2. Marine Microbial Mats and the Search for Evidence of Life in Deep Time and Space

    Science.gov (United States)

    Des Marais, David J.

    2011-01-01

    Cyanobacterial mats in extensive seawater evaporation ponds at Guerrero Negro, Baja California, Mexico, have been excellent subjects for microbial ecology research. The studies reviewed here have documented the steep and rapidly changing environmental gradients experienced by mat microorganisms and the very high rates of biogeochemical processes that they maintained. Recent genetic studies have revealed an enormous diversity of bacteria as well as the spatial distribution of Bacteria, Archaea and Eukarya. These findings, together with emerging insights into the intimate interactions between these diverse populations, have contributed substantially to our understanding of the origins, environmental impacts, and biosignatures of photosynthetic microbial mats. The biosignatures (preservable cells, sedimentary fabrics, organic compounds, minerals, stable isotope patterns, etc.) potentially can serve as indicators of past life on early Earth. They also can inform our search for evidence of any life on Mars. Mars exploration has revealed evidence of evaporite deposits and thermal spring deposits; similar deposits on Earth once hosted ancient microbial mat ecosystems.

  3. VocMat projekt - uudsed e-õppe võimalused turismiasjalistele / Heli Tooman

    Index Scriptorium Estoniae

    Tooman, Heli, 1949-

    2008-01-01

    Turismivaldkonna spetsialistidele mõeldud koolitusprojektist VocMat (Vocational Management Training for the Tourism Industry). Projekti partneriteks Eestis on Ettevõtluse Arendamise Sihtasutuse Turismiarenduskeskus ja Tartu Ülikooli Pärnu kolledzh. Lisa: Kokkuvõte

  4. Halloysite nanotube-based electrospun ceramic nanofibre mat: a novel support for zeolite membranes

    Science.gov (United States)

    Chen, Zhuwen; Zeng, Jiaying; Lv, Dong; Gao, Jinqiang; Zhang, Jian; Bai, Shan; Li, Ruili; Hong, Mei; Wu, Jingshen

    2016-12-01

    Some key parameters of supports such as porosity, pore shape and size are of great importance for fabrication and performance of zeolite membranes. In this study, we fabricated millimetre-thick, self-standing electrospun ceramic nanofibre mats and employed them as a novel support for zeolite membranes. The nanofibre mats were prepared by electrospinning a halloysite nanotubes/polyvinyl pyrrolidone composite followed by a programmed sintering process. The interwoven nanofibre mats possess up to 80% porosity, narrow pore size distribution, low pore tortuosity and highly interconnected pore structure. Compared with the commercial α-Al2O3 supports prepared by powder compaction and sintering, the halloysite nanotube-based mats (HNMs) show higher flux, better adsorption of zeolite seeds, adhesion of zeolite membranes and lower Al leaching. Four types of zeolite membranes supported on HNMs have been successfully synthesized with either in situ crystallization or a secondary growth method, demonstrating good universality of HNMs for supporting zeolite membranes.

  5. Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

    NARCIS (Netherlands)

    Carreira, C; Piel, T; Staal, M.; Stuut, J.-B; Middelboe, M.; Brussaard, C.P.D.

    2015-01-01

    Intertidal photosynthetic microbial mats from the Wadden Sea island Schiermonnikoog were examined for microscale (millimetre) spatial distributions of viruses, prokaryotes and oxygenic photoautotrophs (filamentous cyanobacteria and benthic diatoms) at different times of the year. Abundances of virus

  6. ELECTRO-THERMAL EFFECTS AND DEFORMATION RESPONSE OF CARBON FIBER MAT CEMENT BEAMS

    Institute of Scientific and Technical Information of China (English)

    ZhuSirong; LiZhuoqiu; SongXianhui

    2003-01-01

    A carbon fiber mat is a sheet composed of intercrossing short carbon fibers, which has more stable and lower electrical resistivity compared with dispersed short carbon fiber mixed in cement. Thereby carbon fiber mat cement could exhibit obvious electro-thermal effect. When electrified, the temperature of composite structures made up of cement mortar and carbon fiber mat will rise rapidly. If the temperature field is not uniform, temperature difference will cause structures to deform, which can be used to adjust the deformation of structures. The temperature field and deformation response driven by the electro-thermal effects of a type of carbon fiber mat cement beams are studied. Firstly, the temperature and deformation responses are studied using theories of thermal conduction and elasticity. Secondly, experimental results are given to verify the theoretical solution. These two parts lay the foundation for temperature and deformation adjustment.

  7. Electrically conductive polyaniline-coated electrospun poly(vinylidene fluoride mats

    Directory of Open Access Journals (Sweden)

    Claudia eMerlini

    2015-02-01

    Full Text Available Electrically conductive polyaniline (PANI-coated electrospun poly(vinylidene fluoride (PVDF mats were fabricated through aniline (ANI oxidative polymerization on electrospun PVDF mats. The effect of polymerization condition on structure and property of PVDF/PANI mats was investigated. The electrical conductivity and PANI content enhanced significantly with increasing ANI concentration due to the formation of a conducting polymer layer that completely coated the PVDF fibers surface. The PANI deposition on the PVDF fibers surface increased the Young Modulus and the elongation at break reduced significantly. Attenuated Total Reflectance-Fourier Transform Infrared spectroscopy (ATR-FTIR revealed that the electrospun PVDF and PVDF/PANI mats display a polymorph crystalline structure, with absorption bands associated to the β, α and γ phases.

  8. The Diffusive Boundary-Layer of Sediments - Oxygen Microgradients Over a Microbial Mat

    DEFF Research Database (Denmark)

    JØRGENSEN, BB; MARAIS, DJD

    1990-01-01

    Oxygen microelectrodes were used to analyze the distribution of the diffusive boundary layer (DBL) at the sedimen-water interface in relation to surface topography and flow velocity. The sediment, collected from saline ponds, was covered by a microbial mat that had high oxygen consumption rate...... the mat). The oxygen uptake rate concurrently increased from 3.9 to 9.4 nmol cm-2 min-1. The effects of surface roughness and topography on the thickness and distribution of the DBL were studied by three-dimensional mapping of the sediment-water interface and the upper DBL boundary at 0.1-mm spatial...... resolution. The DBL boundary followed mat structures that had characteristic dimensions > 1/2 DBL thickness but the DBL had a dampened relief relative to the mat. The effective surface area of the sediment-water interface and of the upper DBL boundary were 31 and 14% larger, respectively, than a flat plane...

  9. Robust superhydrophobic mats based on electrospun crystalline nanofibers combined with a silane precursor.

    Science.gov (United States)

    Park, Song Hee; Lee, Song Min; Lim, Ho Sun; Han, Joong Tark; Lee, Dong Ryeol; Shin, Hwa Sung; Jeong, Youngjin; Kim, Jooyong; Cho, Jeong Ho

    2010-03-01

    We demonstrate the fabrication of solvent-resistant, mechanically robust, superhydrophobic nanofibrous mats by electrospinning of poly(vinylidene fluoride) (PVDF) in the presence of inorganic silane materials. The solvent resistance and mechanical strength of nanofibrous mats were dramatically increased through the crystallization of as-spun PVDF fibers or incorporation of a tetraethyl orthosilicate (TEOS) sol into the nanofibrous matrix. The electrospun nanofibrous mats yielded a water contact angle of 156 degrees that did not vary with TEOS content. The solvent resistance and mechanical robustness of the electrospun mats were significantly enhanced through extensive cross-linking of TEOS, even after short PVDF annealing times. The interpenetrating polymer network, which embeds polymer chains in a TEOS network, allows the fabrication of robust functional nanofibers by combining semicrystalline polymers with electrospinning techniques.

  10. Alternating magnetic field heat behaviors of PVDF fibrous mats filled with iron oxide nanoparticles

    Directory of Open Access Journals (Sweden)

    Jinu Kim

    2016-05-01

    Full Text Available To study the magnetic heat behaviors, iron oxide nanoparticles (IONPs and the polyvinylidene fluoride (PVDF fibrous mats filled with IONPs were prepared by using coprecipitaion method and the electrospinning technique. The synthesized IONPs exhibited a magnetization of about 72 emu/g with average diameter of about 10 nm. The magnetizations of PVDF fibrous mats filled with IONPs showed 2.6 emu/g, 5.5 emu/g and 9.9 emu/g for 5 wt.%, 10 wt.% and 20 wt.% IONPs concentration, respectively. The heat of the magnetic fibrous mats were measured under various alternating magnetic fields (90, 128, and 167 Oe, frequencies (190, 250 and 355 kHz. The maximum saturated temperature showed up to 62 °C for 20 wt.% IONPs filled in PVDF fibrous mat under 167 Oe and 355 kHz.

  11. Alternating magnetic field heat behaviors of PVDF fibrous mats filled with iron oxide nanoparticles

    Science.gov (United States)

    Kim, Jinu; Choi, Jung-Su; Yang, Heejae; Ko, Frank K.; Kim, Ki Hyeon

    2016-05-01

    To study the magnetic heat behaviors, iron oxide nanoparticles (IONPs) and the polyvinylidene fluoride (PVDF) fibrous mats filled with IONPs were prepared by using coprecipitaion method and the electrospinning technique. The synthesized IONPs exhibited a magnetization of about 72 emu/g with average diameter of about 10 nm. The magnetizations of PVDF fibrous mats filled with IONPs showed 2.6 emu/g, 5.5 emu/g and 9.9 emu/g for 5 wt.%, 10 wt.% and 20 wt.% IONPs concentration, respectively. The heat of the magnetic fibrous mats were measured under various alternating magnetic fields (90, 128, and 167 Oe), frequencies (190, 250 and 355 kHz). The maximum saturated temperature showed up to 62 °C for 20 wt.% IONPs filled in PVDF fibrous mat under 167 Oe and 355 kHz.

  12. Life in Oligotropic Desert Environments: Contrasting Taxonomic and Functional Diversity of Two Microbial Mats with Metagenomics

    Science.gov (United States)

    Bonilla-Rosso, G.; Peimbert, M.; Olmedo, G.; Alcaraz, L. D.; Eguiarte, L. E.; Souza, V.

    2010-04-01

    The metagenomic analysis of two microbial mats from the oligotrophic waters in the Cuatrociéngas basin reveals large differences both at taxonomic and functional level. These are explained in terms of environmental stability and nutrient availability.

  13. Using polymer mats to biodegrade atrazine in groundwater: laboratory column experiments

    Science.gov (United States)

    Patterson, B. M.; Franzmann, P. D.; Davis, G. B.; Elbers, J.; Zappia, L. R.

    2002-02-01

    Large-scale column experiments were undertaken to evaluate the potential of in situ polymer mats to deliver oxygen into groundwater to induce biodegradation of the pesticides atrazine, terbutryn and fenamiphos contaminating groundwater in Perth, Western Australia. The polymer mats, composed of woven silicone (dimethylsiloxane) tubes and purged with air, were installed in 2-m-long flow-through soil columns. The polymer mats proved efficient in delivering dissolved oxygen to anaerobic groundwater. Dissolved oxygen concentrations increased from biodegradation rates, suggesting that organic carbon was not limiting biodegradation. Atrazine degradation rates estimated in the column experiments were similar to rates determined in laboratory culture experiments, using pure cultures of atrazine-mineralising bacteria. No significant degradation of terbutryn or fenamiphos was observed under the experimental conditions within the time frames of the study. Results from these experiments indicate that remediation of atrazine in a contaminated aquifer may be achievable by delivery of oxygen using an in situ polymer mat system.

  14. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

    Directory of Open Access Journals (Sweden)

    Dilcher David L

    2007-11-01

    Full Text Available Abstract Background Rosids are a major clade in the angiosperms containing 13 orders and about one-third of angiosperm species. Recent molecular analyses recognized two major groups (i.e., fabids with seven orders and malvids with three orders. However, phylogenetic relationships within the two groups and among fabids, malvids, and potentially basal rosids including Geraniales, Myrtales, and Crossosomatales remain to be resolved with more data and a broader taxon sampling. In this study, we obtained DNA sequences of the mitochondrial matR gene from 174 species representing 72 families of putative rosids and examined phylogenetic relationships and phylogenetic utility of matR in rosids. We also inferred phylogenetic relationships within the "rosid clade" based on a combined data set of 91 taxa and four genes including matR, two plastid genes (rbcL, atpB, and one nuclear gene (18S rDNA. Results Comparison of mitochondrial matR and two plastid genes (rbcL and atpB showed that the synonymous substitution rate in matR was approximately four times slower than those of rbcL and atpB; however, the nonsynonymous substitution rate in matR was relatively high, close to its synonymous substitution rate, indicating that the matR has experienced a relaxed evolutionary history. Analyses of our matR sequences supported the monophyly of malvids and most orders of the rosids. However, fabids did not form a clade; instead, the COM clade of fabids (Celastrales, Oxalidales, Malpighiales, and Huaceae was sister to malvids. Analyses of the four-gene data set suggested that Geraniales and Myrtales were successively sister to other rosids, and that Crossosomatales were sister to malvids. Conclusion Compared to plastid genes such as rbcL and atpB, slowly evolving matR produced less homoplasious but not less informative substitutions. Thus, matR appears useful in higher-level angiosperm phylogenetics. Analysis of matR alone identified a novel deep relationship within

  15. Spatial characterization of Leptospira spp. infection in equids from the Brejo Paraibano micro-region in Brazil

    Directory of Open Access Journals (Sweden)

    Ruy Brayner Oliveira Filho

    2014-05-01

    Full Text Available The present study, the first to spatially characterize Leptospira spp. infection among equids in the Brejo Paraibano micro-region of the Paraiba state in the northeast of Brazil, investigated 257 animals in 26 farms properties. Serum samples from 204 horses, 46 mules and seven donkeys were serologically diagnosed using the microscopic agglutination test (MAT. The distribution of Leptospira spp. was studied by employing specific antigens from 24 different Leptospira serovars. All farms were georeferenced and their distribution visualised on a map of the Brejo Paraibano micro-region. In addition, rainfall data were obtained from the same year, in which the sampling was performed. Among the 20 farms found to harbour animals with leptospirosis, 14 (70% exhibited low prevalence, five (25% medium prevalence and one (5%, high prevalence. Certain areas had a higher density of infected farms and required intervention to control the infection. Many serovars were widely distributed, while others were more common in particular areas. There was no significant association between the prevalence of Leptospira spp. infection and rainfall.

  16. Spatial characterization of Leptospira spp. infection in equids from the Brejo Paraibano micro-region in Brazil.

    Science.gov (United States)

    Oliveira Filho, Ruy Brayner; Campos Malta, Karla; Assis Santana, Vania Lucia; Vance Harrop, Mabel Hanna; Tancler Stipp, Danilo; Friguglietti Brandespim, Daniel; Aparecido Mota, Rinaldo; Wilton Pinheiro Júnior, José

    2014-05-01

    The present study, the first to spatially characterize Leptospira spp. infection among equids in the Brejo Paraibano micro-region of the Paraiba state in the northeast of Brazil, investigated 257 animals in 26 farms properties. Serum samples from 204 horses, 46 mules and seven donkeys were serologically diagnosed using the microscopic agglutination test (MAT). The distribution of Leptospira spp. was studied by employing specific antigens from 24 different Leptospira serovars. All farms were georeferenced and their distribution visualised on a map of the Brejo Paraibano micro-region. In addition, rainfall data were obtained from the same year, in which the sampling was performed. Among the 20 farms found to harbour animals with leptospirosis, 14 (70%) exhibited low prevalence, five (25%) medium prevalence and one (5%), high prevalence. Certain areas had a higher density of infected farms and required intervention to control the infection. Many serovars were widely distributed, while others were more common in particular areas. There was no significant association between the prevalence of Leptospira spp. infection and rainfall.

  17. Engineering and Scientific Applications: Using MatLab(Registered Trademark) for Data Processing and Visualization

    Science.gov (United States)

    Sen, Syamal K.; Shaykhian, Gholam Ali

    2011-01-01

    MatLab(TradeMark)(MATrix LABoratory) is a numerical computation and simulation tool that is used by thousands Scientists and Engineers in many countries. MatLab does purely numerical calculations, which can be used as a glorified calculator or interpreter programming language; its real strength is in matrix manipulations. Computer algebra functionalities are achieved within the MatLab environment using "symbolic" toolbox. This feature is similar to computer algebra programs, provided by Maple or Mathematica to calculate with mathematical equations using symbolic operations. MatLab in its interpreter programming language form (command interface) is similar with well known programming languages such as C/C++, support data structures and cell arrays to define classes in object oriented programming. As such, MatLab is equipped with most of the essential constructs of a higher programming language. MatLab is packaged with an editor and debugging functionality useful to perform analysis of large MatLab programs and find errors. We believe there are many ways to approach real-world problems; prescribed methods to ensure foregoing solutions are incorporated in design and analysis of data processing and visualization can benefit engineers and scientist in gaining wider insight in actual implementation of their perspective experiments. This presentation will focus on data processing and visualizations aspects of engineering and scientific applications. Specifically, it will discuss methods and techniques to perform intermediate-level data processing covering engineering and scientific problems. MatLab programming techniques including reading various data files formats to produce customized publication-quality graphics, importing engineering and/or scientific data, organizing data in tabular format, exporting data to be used by other software programs such as Microsoft Excel, data presentation and visualization will be discussed.

  18. Loss of matK RNA editing in seed plant chloroplasts

    Directory of Open Access Journals (Sweden)

    Maier Uwe G

    2009-08-01

    Full Text Available Abstract Background RNA editing in chloroplasts of angiosperms proceeds by C-to-U conversions at specific sites. Nuclear-encoded factors are required for the recognition of cis-elements located immediately upstream of editing sites. The ensemble of editing sites in a chloroplast genome differs widely between species, and editing sites are thought to evolve rapidly. However, large-scale analyses of the evolution of individual editing sites have not yet been undertaken. Results Here, we analyzed the evolution of two chloroplast editing sites, matK-2 and matK-3, for which DNA sequences from thousands of angiosperm species are available. Both sites are found in most major taxa, including deep-branching families such as the nymphaeaceae. However, 36 isolated taxa scattered across the entire tree lack a C at one of the two matK editing sites. Tests of several exemplary species from this in silico analysis of matK processing unexpectedly revealed that one of the two sites remain unedited in almost half of all species examined. A comparison of sequences between editors and non-editors showed that specific nucleotides co-evolve with the C at the matK editing sites, suggesting that these nucleotides are critical for editing-site recognition. Conclusion (i Both matK editing sites were present in the common ancestor of all angiosperms and have been independently lost multiple times during angiosperm evolution. (ii The editing activities corresponding to matK-2 and matK-3 are unstable. (iii A small number of third-codon positions in the vicinity of editing sites are selectively constrained independent of the presence of the editing site, most likely because of interacting RNA-binding proteins.

  19. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats

    Directory of Open Access Journals (Sweden)

    Jackson Z Lee

    2014-02-01

    Full Text Available Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB. However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico -- permanently submerged Microcoleus microbial mats (GN-S, and intertidal Lyngbya microbial mats (GN-I -- were used in microcosm diel manipulation experiments with 3-(3,4-dichlorophenyl-1,1-dimethylurea (DCMU, molybdate, ammonium addition, and physical disruption to understand the processes responsible for hydrogen cycling between mat microbes. Across microcosms, H2 production occurred under dark anoxic conditions with simultaneous production of a suite of organic acids. H2 production was not significantly affected by inhibition of nitrogen fixation, but rather appears to result from constitutive fermentation of photosynthetic storage products by oxygenic phototrophs. Comparison to accumulated glycogen and to CO2 flux indicated that, in the GN-I mat, fermentation released almost all of the carbon fixed via photosynthesis during the preceding day, primarily as organic acids. Across mats, although oxygenic and anoxygenic phototrophs were detected, cyanobacterial [NiFe]-hydrogenase transcripts predominated. Molybdate inhibition experiments indicated that SRBs from a wide distribution of dsrA phylotypes were responsible for H2 consumption. Incubation with 13C-acetate and nanoSIMS (secondary ion mass-spectrometry indicated higher uptake in both Chloroflexi and SRBs relative to other filamentous bacteria. These manipulations and diel incubations confirm that Cyanobacteria were the main fermenters in Guerrero Negro mats and that the net flux of nighttime fermentation byproducts (not only hydrogen was largely regulated by the interplay between Cyanobacteria, SRBs, and Chloroflexi.

  20. Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments

    DEFF Research Database (Denmark)

    Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus;

    2013-01-01

    Six phototrophic microbial mat communities from different geothermal springs (YNP) were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across...... the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average 53Mbp/site) were...

  1. Microbial Mat Compositional and Functional Sensitivity to Environmental Disturbance

    Science.gov (United States)

    Preisner, Eva C.; Fichot, Erin B.; Norman, Robert S.

    2016-01-01

    The ability of ecosystems to adapt to environmental perturbations depends on the duration and intensity of change and the overall biological diversity of the system. While studies have indicated that rare microbial taxa may provide a biological reservoir that supports long-term ecosystem stability, how this dynamic population is influenced by environmental parameters remains unclear. In this study, a microbial mat ecosystem located on San Salvador Island, The Bahamas was used as a model to examine how environmental disturbance affects the protein synthesis potential (PSP) of rare and abundant archaeal and bacterial communities and how these changes impact potential biogeochemical processes. This ecosystem experienced a large shift in salinity (230 to 65 g kg-1) during 2011–2012 following the landfall of Hurricane Irene on San Salvador Island. High throughput sequencing and analysis of 16S rRNA and rRNA genes from samples before and after the pulse disturbance showed significant changes in the diversity and PSP of abundant and rare taxa, suggesting overall compositional and functional sensitivity to environmental change. In both archaeal and bacterial communities, while the majority of taxa showed low PSP across conditions, the overall community PSP increased post-disturbance, with significant shifts occurring among abundant and rare taxa across and within phyla. Broadly, following the post-disturbance reduction in salinity, taxa within Halobacteria decreased while those within Crenarchaeota, Thaumarchaeota, Thermoplasmata, Cyanobacteria, and Proteobacteria, increased in abundance and PSP. Quantitative PCR of genes and transcripts involved in nitrogen and sulfur cycling showed concomitant shifts in biogeochemical cycling potential. Post-disturbance conditions increased the expression of genes involved in N-fixation, nitrification, denitrification, and sulfate reduction. Together, our findings show complex community adaptation to environmental change and help

  2. Microbial Mat Compositional and Functional Sensitivity to Environmental Disturbance

    Directory of Open Access Journals (Sweden)

    Eva Christine Preisner

    2016-10-01

    Full Text Available The ability of ecosystems to adapt to environmental perturbations depends on the duration and intensity of change and the overall biological diversity of the system. While studies have indicated that rare microbial taxa may provide a biological reservoir that supports long-term ecosystem stability, how this dynamic population is influenced by environmental parameters remains unclear. In this study, a microbial mat ecosystem located on San Salvador Island, The Bahamas was used as a model to examine how environmental disturbance affects the protein synthesis potential (PSP of rare and abundant archaeal and bacterial communities and how these changes impact potential biogeochemical processes. This ecosystem experienced a large shift in salinity (230 to 65 g kg-1 during 2011-2012 following the landfall of Hurricane Irene on San Salvador Island. High throughput sequencing and analysis of 16S rRNA and rRNA genes from samples before and after the pulse disturbance showed significant changes in the diversity and PSP of abundant and rare taxa, suggesting overall compositional and functional sensitivity to environmental change. In both archaeal and bacterial communities, while the majority of taxa showed low PSP across conditions, the overall community PSP increased post-disturbance, with significant shifts occurring among abundant and rare taxa across and within phyla. Broadly, following the post-disturbance reduction in salinity, taxa within Halobacteria decreased while those within Crenarchaeota, Thaumarchaeota, Thermoplasmata, Cyanobacteria, and Proteobacteria, increased in abundance and PSP. Quantitative PCR of genes and transcripts involved in nitrogen and sulfur cycling showed concomitant shifts in biogeochemical cycling potential. Post-disturbance conditions increased the expression of genes involved in N-fixation, nitrification, denitrification, and sulfate reduction. Together, our findings show complex community adaptation to environmental

  3. Late Archean mineralised cyanobacterial mats and their modern analogs

    Science.gov (United States)

    Kazmierczak, J.; Altermann, W.; Kremer, B.; Kempe, S.; Eriksson, P. G.

    2008-09-01

    ,c) reminiscent of common sheaths (glycocalix), typical for coccoidal colonial (pseudoparenchymatous) entophysalidacean or pleurocapsalean cyanobacteria (Fig. 2d-f). The remains of the coccoid sheaths and capsules are visible as a system of rimmed subglobular or irregularly polygonal pits separated from adjacent pits by 2-3 μm thick walls. Microprobe analyses show that the interiors of the pits are composed of almost pure calcium carbonate whereas the rims and walls of calcium carbonate with high admixture of silicates (mostly Al-Fe clay-like silicates) and dolomite. High magnification images of rims and walls confirm the microprobe data indicating authigenic character of the minerals forming both the carbonate infilling the pits interiors (CaCO3) and their rims and walls (CaCO3 + Al-Fe silicates + dolomite). EPSC Abstracts, Vol. 3, EPSC2008-A-00493, 2008 European Planetary Science Congress, Author(s) 2008 It seems that carbonates were the first mineral phase filling the spaces remained after the plasmolysis of the cyanobacterial cell contents, whereas the formation of silicates within the exopolysaccharides forming the bulk of the sheaths and capsules was a later diagenetic process. Microprobe analyses of mineralised modern coccoid cyanobacterial mats forming tower-like structures in the highly alkaline Lake Van, Turkey [3,4] display a set of elements indicative for the presence of authigenic carbonate and silicate minerals which are almost identical with that occurring in the studied Neoarchean samples. Also the optical and SEM images of polished and etched platelets of permineralised Lake Van microbialites are strikingly similar (Fig. 2d-f). Similarly as in modern cyanobacterial and other microbial mats, the process of early post mortem mineralisation, in the case of the Nauga Formation, was most probably associated with the action of heterotrophic bacteria upon the dead cyanobacterial biomass. Heterotrophic bacteria occupying EPS layers of living and dead cyanobacterial

  4. MatLab program for precision calibration of optical tweezers

    Science.gov (United States)

    Tolić-Nørrelykke, Iva Marija; Berg-Sørensen, Kirstine; Flyvbjerg, Henrik

    2004-06-01

    Optical tweezers are used as force transducers in many types of experiments. The force they exert in a given experiment is known only after a calibration. Computer codes that calibrate optical tweezers with high precision and reliability in the ( x, y)-plane orthogonal to the laser beam axis were written in MatLab (MathWorks Inc.) and are presented here. The calibration is based on the power spectrum of the Brownian motion of a dielectric bead trapped in the tweezers. Precision is achieved by accounting for a number of factors that affect this power spectrum. First, cross-talk between channels in 2D position measurements is tested for, and eliminated if detected. Then, the Lorentzian power spectrum that results from the Einstein-Ornstein-Uhlenbeck theory, is fitted to the low-frequency part of the experimental spectrum in order to obtain an initial guess for parameters to be fitted. Finally, a more complete theory is fitted, a theory that optionally accounts for the frequency dependence of the hydrodynamic drag force and hydrodynamic interaction with a nearby cover slip, for effects of finite sampling frequency (aliasing), for effects of anti-aliasing filters in the data acquisition electronics, and for unintended "virtual" filtering caused by the position detection system. Each of these effects can be left out or included as the user prefers, with user-defined parameters. Several tests are applied to the experimental data during calibration to ensure that the data comply with the theory used for their interpretation: Independence of x- and y-coordinates, Hooke's law, exponential distribution of power spectral values, uncorrelated Gaussian scatter of residual values. Results are given with statistical errors and covariance matrix. Program summaryTitle of program: tweezercalib Catalogue identifier: ADTV Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland. Program Summary URL:http://cpc.cs.qub.ac.uk/summaries/ADTV Computer for

  5. Fabrication and Characterization of Electrospun Polycaprolactone Blended with Chitosan-Gelatin Complex Nanofibrous Mats

    Directory of Open Access Journals (Sweden)

    Yongfang Qian

    2014-01-01

    Full Text Available Design and fabrication of nanofibrous scaffolds should mimic the native extracellular matrix. This study is aimed at investigating electrospinning of polycaprolactone (PCL blended with chitosan-gelatin complex. The morphologies were observed from scanning electron microscope. As-spun blended mats had thinner fibers than pure PCL. X-ray diffraction was used to analyze the degree of crystallinity. The intensity at two peaks at 2θ of 21° and 23.5° gradually decreased with the percentage of chitosan-gelatin complex increasing. Moreover, incorporation of the complex could obviously improve the hydrophilicity of as-spun blended mats. Mechanical properties of as-spun nanofibrous mats were also tested. The elongation at break of fibrous mats increased with the PCL content increasing and the ultimate tensile strength varied with different weight ratios. The as-spun mats had higher tensile strength when the weight ratio of PCL to CS-Gel was 75/25 compared to pure PCL. Both as-spun PCL scaffolds and PCL/CS-Gel scaffolds supported the proliferation of porcine iliac endothelial cells, and PCL/CS-Gel had better cell viability than pure PCL. Therefore, electrospun PCL/Chitosan-gelatin nanofibrous mats with weight ratio of 75/25 have better hydrophilicity mechanical properties, and cell proliferation and thus would be a promising candidate for tissue engineering scaffolds.

  6. Enhancing the mechanical properties of electrospun polyester mats by heat treatment

    Directory of Open Access Journals (Sweden)

    M. Kancheva

    2015-01-01

    Full Text Available Microfibrous materials with a targeted design based on poly(L-lactic acid (PLA and poly(ε-caprolactone (PCL were prepared by electrospinning and by combining electrospinning and electrospraying. Several approaches were used: (i electrospinning of a common solution of the two polymers, (ii simultaneous electrospinning of two separate solutions of PLA and PCL, (iii electrospinning of PLA solution in conjunction with electrospraying of PCL solution, and (iv alternating layer-by-layer deposition by electrospinning of separate PLA and PCL solutions. The mats were heated at the melting temperature of PCL (60°", thus achieving melting of PCL fibers/particles and thermal sealing of the fibers. The mats subjected to thermal treatment were characterized by greater mean fiber diameters and reduced values of the water contact angle compared to the pristine mats. Heat treatment of the mats affected their thermal stability and led to an increase in the crystallinity degree of PLA incorporated in the mats, whereas that of PCL was reduced. All mats were characterized by enhanced mechanical properties after thermal treatment as compared to the non-treated fibrous materials.

  7. Using MatContM in the study of a nonlinear map in economics

    Science.gov (United States)

    Neirynck, Niels; Al-Hdaibat, Bashir; Govaerts, Willy; Kuznetsov, Yuri A.; Meijer, Hil G. E.

    2016-02-01

    MatContM is a MATLAB interactive toolbox for the numerical study of iterated smooth maps, their Lyapunov exponents, fixed points, and periodic, homoclinic and heteroclinic orbits as well as their stable and unstable invariant manifolds. The bifurcation analysis is based on continuation methods, tracing out solution manifolds of various types of objects while some of the parameters of the map vary. In particular, MatContM computes codimension 1 bifurcation curves of cycles and supports the computation of the normal form coefficients of their codimension two bifurcations, and allows branch switching from codimension 2 points to secondary curves. MatContM builds on an earlier command-line MATLAB package CL MatContM but provides new computational routines and functionalities, as well as a graphical user interface, enabling interactive control of all computations, data handling and archiving. We apply MatContM in our study of the monopoly model of T. Puu with cubic price and quadratic marginal cost functions. Using MatContM, we analyze the fixed points and their stability and we compute branches of solutions of period 5, 10, 13 17. The chaotic and periodic behavior of the monopoly model is further analyzed by computing the largest Lyapunov exponents.

  8. Mechanical Properties of Natural Jute Fabric/Jute Mat Fiber Reinforced Polymer Matrix Hybrid Composites

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    Elsayed A. Elbadry

    2012-01-01

    Full Text Available Recycled needle punched jute fiber mats as a first natural fiber reinforcement system and these jute mats used as a core needle punched with recycled jute fabric cloths as skin layers as a second natural fiber reinforcement system were used for unsaturated polyester matrix composites via modifying the hand lay-up technique with resin preimpregnation into the jute fiber in vacuum. The effect of skin jute fabric on the tensile and bending properties of jute mat composites was investigated for different fiber weight contents. Moreover, the notch sensitivity of these composites was also compared by using the characteristic distance do calculated by Finite Element Method (FEM. The results showed that the tensile and flexural properties of jute mat composites increased by increasing the fiber weight content and by adding the jute fabric as skin layers. On the other hand, by adding the skins, the characteristic distance decreased and, therefore, the notch sensitivity of the composites increased. The fracture behavior investigated by SEM showed that extensive fiber pull-out mechanism was revealed at the tension side of jute mat composites under the bending load and by adding the jute cloth, the failure mode of jute mat was changed to fiber bridge mechanism.

  9. Realization of Structural Optimization and Reliability Analysisby Mixing Programming of MatLab and Fortran%MatLab与Fortran混合编程实现结构优化和可靠性分析

    Institute of Scientific and Technical Information of China (English)

    赵秀丽; 易平

    2012-01-01

    The mixing programming of MatLab and Fortran is used for the effective use of MatLab and existing Fortran finite element programs.Through the MatLab programming interface,the MatLab and Fortran finite element programs are successfully connected to implement the static analysis of plane truss structures.Then the optimal toolbox and statistics toolbox of MatLab are used for programming to realize the structural optimization and reliability analysis of plane truss structures.%为有效利用MatLab和现有Fortran有限元程序,采用MatLab与Fortran混合编程。通过MatLab程序接口,将MatLab与Fortran有限元程序成功连接实现平面桁架结构的静力分析;然后在MatLab环境下运用优化工具箱和统计工具箱编程实现了平面桁架的结构优化设计和可靠指标的计算。

  10. Prevalence of Brucella spp in humans

    Directory of Open Access Journals (Sweden)

    Catharina de Paula Oliveira Cavalcanti Soares

    2015-10-01

    Full Text Available Objective: to determine the seroprevalence of Brucella spp in humans.Method: this is an observational study, developed with 455 individuals between 18 and 64 years old, who use the Estratégia de Saúde da Família (Brazil's family health strategy. The serum samples of volunteers underwent buffered acid antigen tests, such as screening, agar gel immunodiffusion and slow seroagglutination test in tubes and 2-Mercaptoethanol.Results: among the samples, 1.98% has responded to buffered-acid antigen, 2.85% to agar gel immunodiffusion test and 1.54% to the slow seroagglutination tests on tubes/2-Mercaptoethanol. The prevalence of Brucella spp was 4.4%, represented by the last two tests.Conclusion: the results of this research suggest that the studied population is exposed to Brucella spp infection.

  11. The calcium carbonate saturation state in cyanobacterial mats throughout Earth’s history

    Science.gov (United States)

    Aloisi, Giovanni

    2008-12-01

    Through early lithification, cyanobacterial mats produced vast amounts of CaCO 3 on Precambrian carbonate platforms (before 540 Myr ago). The superposition of lithified cyanobacterial mats forms internally laminated, macroscopic structures known as stromatolites. Similar structures can be important constituents of Phanerozoic carbonate platforms (540 Myr to present). Early lithification in modern marine cyanobacterial mats is thought to be driven by a metabolically-induced increase of the CaCO 3 saturation state ( Ω) in the mat. However, it is uncertain which microbial processes produce the Ω increase and to which extent similar Ω shifts were possible in Precambrian oceans whose chemistry differed from that of the modern ocean. I developed a numerical model that calculates Ω in cyanobacterial mats and used it to tackle these questions. The model is first applied to simulate Ω in modern calcifying cyanobacterial mats forming at Highborne Cay (Bahamas); it shows that while cyanobacterial photosynthesis increases Ω considerably, sulphate reduction has a small and opposite effect on mat Ω because it is coupled to H 2S oxidation with O 2 which produces acidity. Numerical experiments show that the magnitude of the Ω increase is proportional to DIC in DIC-limited waters (DIC concentration of Ca 2+ in ambient waters. With oceanic Ca 2+ concentrations greater than a few millimolar, an appreciable increase in Ω occurs in mats under a wide range of environmental conditions, including those supposed to exist in the oceans of the past 2.8 Gyr. The likely lithological expression is the formation of the microsparitic stromatolite microtexture—indicative of CaCO 3 precipitation within the mats under the control of microbial activity—which is found in carbonate rocks spanning from the Precambrian to recent. The model highlights the potential for an increase in the magnitude of the Ω shift in cyanobacterial mats throughout Earth's history produced by a decrease in

  12. Active ingredient-containing chitosan/polycaprolactone nonwoven mats: Characterizations and their functional assays

    Energy Technology Data Exchange (ETDEWEB)

    Bai, Meng-Yi, E-mail: mybai@mail.ntust.edu.tw [Graduate Institute of Biomedical Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan, ROC (China); Adjunct appointment to the Department of Biomedical Engineering, National Defense Medical Center, Taipei 114, Taiwan, ROC (China); Chou, Tz-Chong, E-mail: tcchou@ms5.hinet.net [Department of Biomedical Engineering, National Defense Medical Center, Taipei 114, Taiwan, ROC (China); Tsai, Jie-Chang; Yang, Hui-Ching [Graduate Institute of Biomedical Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan, ROC (China)

    2013-01-01

    This study demonstrates a facile method developed to generate a chitosan/polycaprolactone (CS/PCL) nonwoven mat. All nonwoven mats are composed of microfibers with an average diameter of 2.51 {+-} 0.69 {mu}m. The X-ray photoelectron spectroscopy data indicate that positively charged nitrogen was generated on the surface of the mats after undergoing CS coating. By using a non-contacting electrostatic voltmeter, we determined that the nonwoven mats exhibited a positive potential and the charge density of the CS/PCL nonwoven mat was in proportion to the thickness of the CS overlayer. Moreover, platelet aggregation and anti-bacterial ability were enhanced by the CS/PCL nonwoven mat as compared to that of PCL nonwoven mat alone. The enhancements of the CS/PCL nonwoven mat on platelet aggregation are further promoted by incorporating a 1 mM calcium ion in its CS overlayer. We also find that the addition of tea tree oil in the CS overlayer significantly inhibited LPS-induced nitrite formation in Raw 264.7 macrophages. In conclusion, our CS/PCL nonwoven mat possesses pharmacological effects including an increase of platelet aggregation, anti-bacterial, anti-adhesive, and anti-inflammatory activities. The performance of this CS/PCL nonwoven mat can be further promoted by incorporating active compounds to exert therapeutic effects in wound healing. Highlights: Black-Right-Pointing-Pointer We develop a facile method to generate active ingredient-containing CS/PCLNM. Black-Right-Pointing-Pointer Our CS/PCLNM possesses superior mechanical strength, compared to CS-blended PCL nanofibers. Black-Right-Pointing-Pointer We prove that our prepared CS/PCLNM possesses several pharmacological properties Black-Right-Pointing-Pointer The functional performances of CS/PCLNM are enhanced by incorporation of active compounds. Black-Right-Pointing-Pointer Incorporation of 1 mM of calcium ions or 100 {mu}L of TTO into the CS overlayer of CS/PCLNM is the optimum dose.

  13. Suppression of Pythium spp. by Trichoderma spp. during germination of tomato seeds in soilless growing media.

    Science.gov (United States)

    Aerts, R; De Schutter, B; Rombouts, L

    2002-01-01

    In the Flemish horticulture Pythium spp. is an important pathogen of tomato plants (Lycopersicon esculenthum) in soilless growing media. Therefore some experiments were conducted to evaluate the possibility of decreasing the damage caused by Pythium spp. by Trichoderma spp. In a tray with several growing media, a suspension of Trichoderma conidia (10(6)/ml growing medium) was applied two weeks before sowing. On some objects, a compost extract (Biostimulus) was added. The growing media used in the experiment were rockwool, recycled rockwool and recycled coconut fibre. After sowing, the trays were covered with perlite. Three isolates of Trichoderma spp.: T. asperellum (Biofungus), T. harzianum (Tri 003) and Trichoderma sp. (KHK) and two isolates of Pythium spp.: P. ultimum (MUCL) en P. aphanidermatum (HRI, UK) were used. Propamocarb was used as a chemical standard. The use of coconut fibre growing medium resulted in a higher percentage (36%) of germination than the rockwool media when only Pythium spp. was used. The presence of the spontaneous developing microflora in the coconut fibre medium gave probably also a suppression of Pythium spp. For that reason the results of the suppression by Trichoderma spp. are not easy to explain and very variable on the different objects. Pythium ultimum was more suppressed than P. aphanidermatum on all the growing media and the application of all the Trichoderma isolates increased the germination percentage of tomato seeds. T. asperellum (Biofungus) gave on rockwool also a good result for the suppression of P. aphanidermatum (increasing of germination with 48%). This effect was comparable with the propamocarb treatment (48%). T. harzianum (Tri 003) gave a small suppression (22%) and Trichoderma sp. (KHK) gave almost no suppression of P. aphanidermatum (7%). When less Trichoderma conidia were applied the germination percentage decreased. The adding of a compost extract (Biostimulus) had no influence on the results. This experiment

  14. Kosningadagar 2007. Minningar - greining - mat - uppgjör

    Directory of Open Access Journals (Sweden)

    Jón Sigurðsson

    2010-06-01

    Full Text Available Þessi ritsmíð er tilraun til að draga saman nokkra meginþætti í stöðu og málstað Framsóknarmanna í Alþingiskosningunum 2007. Um leið er greinin persónulegar minningar, mat og uppgjör höfundar sem var um stutt skeið formaður Framsóknarflokksins, ráðherra og frambjóðandi í Reykjavíkurkjördæmi norður, en náði ekki kjöri og hvarf frá stjórnmálastörfum. Höfundur leitast við að draga fram nokkur mikilvæg atriði til að fylla út í almenna mynd af íslenskum stjórnmálum á þessum tíma, með sérstakri áherslu á stöðu Framsóknarmanna og sjónarmið þeirra. Lýst er viðhorfum og stöðu mála innan flokksins og nefndar nokkrar hugsanlegar meginástæður fyrir stöðunni sem upp var komin. Raktir eru nokkrir málefnaflokkar sem hátt bar í kosningunum og lýst afstöðu til þeirra. Í síðara hluta greinarinnar er vikið að eftirleik kosninganna, viðræðum um nýja ríkisstjórn og straumum sem léku um forystu Framsóknarflokksins eftir versta afhroð í sögu hans. Höfundur leitast í sjálfu sér ekki við að taka hlutlausa afstöðu, en þó er það von hans að ritsmíðin nýtist öðrum, meðal annars við fræðilega úrvinnslu.

  15. DNA microarray-based detection of multiple pathogens: Mycoplasma spp. and Chlamydia spp.

    Science.gov (United States)

    Schnee, Christiane; Sachse, Konrad

    2015-01-01

    Rapid detection of slow-growing or non-culturable microorganisms, such as Mycoplasma spp. and Chlamydia spp., is still a challenge to diagnosticians in the veterinary field. In addition, as epidemiological evidence on the frequency of mixed infections involving two and more bacterial species has been emerging, detection methods allowing simultaneous identification of different pathogens are required. In the present chapter, we describe DNA microarray-based procedures for the detection of 83 Mollicutes species (Mycoplasma assay) and 11 Chlamydia spp. (Chlamydia assay). The assays are suitable for use in a routine diagnostic environment, as well as in microbiological research.

  16. The Epsomitic Phototrophic Microbial Mat of Hot Lake, Washington. Community Structural Responses to Seasonal Cycling

    Energy Technology Data Exchange (ETDEWEB)

    Lindemann, Stephen R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Moran, James J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Stegen, James C. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Renslow, Ryan S. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Hutchison, Janine R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Cole, Jessica K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Dohnalkova, Alice [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Tremblay, Julien [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Singh, Kanwar [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Malfatti, Stephanie [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Chen, Feng [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tringe, Susannah [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Beyenal, Haluk [Washington State Univ., Pullman, WA (United States); Fredrickson, Jim K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2013-11-13

    Phototrophic microbial mats are compact ecosystems composed of highly interactive organisms in which energy and element cycling take place over millimeter-to-centimeter-scale distances. Although microbial mats are common in hypersaline environments, they have not been extensively characterized in systems dominated by divalent ions. Hot Lake is a meromictic, epsomitic lake that occupies a small, endorheic basin in north-central Washington. The lake harbors a benthic, phototrophic mat that assembles each spring, disassembles each fall, and is subject to greater than tenfold variation in salinity (primarily Mg2+ and SO2-4) and irradiation over the annual cycle. We examined spatiotemporal variation in the mat community at five time points throughout the annual cycle with respect to prevailing physicochemical parameters by amplicon sequencing of the V4 region of the 16S rRNA gene coupled to near-full-length 16S RNA clone sequences. The composition of these microbial communities was relatively stable over the seasonal cycle and included dominant populations of Cyanobacteria, primarily a group IV cyanobacterium (Leptolyngbya), and Alphaproteobacteria (specifically, members of Rhodobacteraceae and Geminicoccus). Members of Gammaproteobacteria (e.g., Thioalkalivibrio and Halochromatium) and Deltaproteobacteria (e.g., Desulfofustis) that are likely to be involved in sulfur cycling peaked in summer and declined significantly by mid-fall, mirroring larger trends in mat community richness and evenness. Phylogenetic turnover analysis of abundant phylotypes employing environmental metadata suggests that seasonal shifts in light variability exert a dominant influence on the composition of Hot Lake microbial mat communities. The seasonal development and organization of these structured microbial mats provide opportunities for analysis of the temporal and physical dynamics that feed back to community function.

  17. The Epsomitic Phototrophic Microbial Mat of Hot Lake, Washington: Community Structural Responses to Seasonal Cycling

    Directory of Open Access Journals (Sweden)

    Stephen R Lindemann

    2013-11-01

    Full Text Available Phototrophic microbial mats are compact ecosystems composed of highly interactive organisms in which energy and element cycling take place over millimeter-to-centimeter-scale distances. Although microbial mats are common in hypersaline environments, they have not been extensively characterized in systems dominated by divalent ions. Hot Lake is a meromictic, epsomitic lake that occupies a small, endorheic basin in north-central Washington. The lake harbors a benthic, phototrophic mat that assembles each spring and disassembles each fall and is subject to greater than tenfold variation in salinity (primarily Mg2+ and SO42- and irradiation over the annual cycle. We examined spatiotemporal variation in the mat community at five time points throughout the annual cycle with respect to prevailing physicochemical parameters by sequencing the V4 region of the 16S rRNA gene coupled to near-full-length 16S RNA clone sequences. The composition of these microbial communities was relatively stable over the seasonal cycle and included dominant populations of Cyanobacteria, primarily a group IV cyanobacterium (Leptolyngbya, and Alphaproteobacteria (specifically, members of Rhodobacteraceae and Geminicoccus. Members of Gammaproteobacteria (e.g., Thioalkalivibrio and Halochromatium and Deltaproteobacteria (e.g., Desulfofustis that are likely to be involved in sulfur cycling peaked in summer and declined significantly by mid-fall, mirroring larger trends in mat community richness and evenness. Phylogenetic turnover analysis of abundant phylotypes employing environmental metadata suggests that seasonal shifts in light variability exert a dominant influence on the composition of Hot Lake microbial mat communities. The seasonal development and organization of these structured microbial mats provide opportunities for analysis of the temporal and physical dynamics that feed back to community function.

  18. Compound-specific Isotope Analysis of Cyanobacterial Pure cultures and Microbial Mats: Effects of Photorespiration?

    Science.gov (United States)

    Jahnke, L. L.; Summons, R. E.

    2006-01-01

    Microbial mats are considered modern homologs of Precambrian stromatolites. The carbon isotopic compositions of organic matter and biomarker lipids provide clues to the depositional environments of ancient mat ecosystems. As the source of primary carbon fixation for over two billion years, an understanding of cyanobacterial lipid biosynthesis, associated isotopic discriminations, and the influence of physiological factors on growth and isotope expression is essential to help us compare modern microbial ecosystems to their ancient counterparts. Here, we report on the effects of photorespiration (PR) on the isotopic composition of cyanobacteria and biomarker lipids, and on potential PR effects associated with the composition of various microbial mats. The high light, high O2 and limiting CO2 conditions often present at the surface of microbial mats are known to support PR in cyanobacteria. The oxygenase function of ribulose bisphosphate carboxylase/oxygenase can result in photoexcretion of glycolate and subsequent degration by heterotrophic bacteria. We have found evidence which supports an isotopic depletion (increased apparent E) scaled to O2 level associated with growth of Phormidium luridum at low CO2 concentrations (less than 0.04%). Similar to previous studies, isotopic differences between biomass and lipid biomarkers, and between lipid classes were positively correlated with overall fractionation, and should provide a means of estimating the influence of PR on overall isotopic composition of microbial mats. Several examples of microbial mats growing in the hydrothermal waters of Yellowstone National Park and the hypersaline marine evaporation ponds at Guerrero Negro, Baja Sur Mexico will be compared with a view to PR as a possible explanation of the relatively heavy C-isotope composition of hypersaline mats.

  19. UV B-Induced Vertical Migrations of Cyanobacteria in a Microbial Mat.

    Science.gov (United States)

    Bebout, B M; Garcia-Pichel, F

    1995-12-01

    Exposure to moderate doses of UV B (0.35 to 0.79 W m(sup-2) s(sup-1) or 0.98 to 2.2 (mu)mol of photons m(sup-2) s(sup-1) at 310 nm) caused the surface layers of microbial mats from Solar Lake, Sinai, Egypt, to become visibly lighter green. Concurrent with the color change were rapid and dramatic reductions in gross photosynthesis and in the resultant high porewater oxygen concentrations in the surface layers of the mats. The depths at which both maximum gross photosynthesis and maximum oxygen concentrations occurred were displaced downward. In contrast, gross photosynthesis in the deeper layers of the mats increased in response to UV B incident upon the surface. The cessation of exposure to UV B partially reversed all of these changes. Taken together, these responses suggest that photoautotrophic members of the mat community, most likely the dominant cyanobacterium Microcoleus chthonoplastes, were migrating in response to the added UV B. The migration phenomenon was also observed in response to increases in visible radiation and UV A, but UV B was ca. 100-fold more effective than visible radiation and ca. 20-fold more effective than UV A in provoking the response. Migrating microorganisms within this mat are apparently able to sense UV B directly and respond behaviorally to limit their exposure to UV. Because of strong vertical gradients of light and dissolved substances in microbial mats, the migration and the resultant vertical redistribution of photosynthetic activity have important consequences for both the photobiology of the cyanobacteria and the net primary productivity of the mat ecosystem.

  20. Novel naturally crosslinked electrospun nanofibrous chitosan mats for guided bone regeneration membranes: material characterization and cytocompatibility.

    Science.gov (United States)

    Norowski, Peter A; Fujiwara, Tomoko; Clem, William C; Adatrow, Pradeep C; Eckstein, Eugene C; Haggard, Warren O; Bumgardner, Joel D

    2015-05-01

    Guided bone regeneration (GBR) barrier membranes are used to prevent soft tissue infiltration into the graft space during dental procedures that involve bone grafting. Chitosan materials have shown promise as GBR barrier membranes, due to their biocompatibility and predictable biodegradability, but degradation rates may still be too high for clinical applications. In this study, chitosan GBR membranes were electrospun using chitosan (70% deacetylated, 312 kDa, 5.5 w/v%), with or without the addition of 5 or 10 mm genipin, a natural crosslinking agent, in order to extend the degradation to meet the clinical target time frame of 4-6 months. Membranes were evaluated for fibre diameter, tensile strength, biodegradation rate, bond structure and cytocompatibility. Genipin addition, at 5 or 10 mm, resulted in median fibre diameters 184, 144 and 154 nm for uncrosslinked, 5 mm and 10 mm crosslinked, respectively. Crosslinking, examined by Fourier transform infrared spectroscopy, showed a decrease in N-H stretch as genipin levels were increased. Genipin-crosslinked mats exhibited only 22% degradation based on mass loss, as compared to 34% for uncrosslinked mats at 16 weeks in vitro. The ultimate tensile strength of the mats was increased by 165% to 32 MPa with 10 mm crosslinking as compared to the uncrosslinked mats. Finally, genipin-crosslinked mats supported the proliferation of SAOS-2 cells in a 5 day growth study, similar to uncrosslinked mats. These results suggest that electrospun chitosan mats may benefit from genipin crosslinking and have the potential to meet clinical degradation time frames for GBR applications.

  1. Photosynthetic microbial mats today, on early Earth, (and on early Mars?)

    Science.gov (United States)

    Des Marais, D. J.

    2008-05-01

    Marine hypersaline cyanobacterial mats offer insights about their ancient ancestors, whose fossil record is 3.43 billion years old. Studies of mat microbiota have greatly expanded the known diversity of ancient microbial lineages. Their evolution was shaped by mat microenvironments, which can differ substantially from their surroundings. Oxygenic photosynthesis perhaps developed in microbial mats and probably triggered a major evolutionary transformation and diversification of the early biosphere. Gross primary production rates in cyanobacterial mats can rival the most productive ecosystems known. Sunlight changes in intensity and spectral composition as it penetrates mats, and counteracting gradients of O2 and sulfide shape the chemical microenvironment. A combination of benefits and hazards of light, O2 and sulfide promotes the allocation of the various essential mat processes between light and dark periods and to various depths in the mat. Close inspection has revealed surprises, for example: anoxygenic phototrophs inside cyanobacterial sheaths, record- high sulfate reduction rates in O2-saturated conditions, and high H2 fluxes into overlying waters. Diverse organic biomarker compounds have been documented that are amenable to long-term preservation. Such coordinated observations of populations, processes and products are making fundamental questions in ecology accessible. Cyanobacterial mats have robust fossil records in part because they populated stable continental platforms and margins, contributing to sediments having high preservation potential. Proterozoic cyanobacterial fossils and organic biomarkers are well documented. The 3.43 Ga Strelley Pool cherts, W. Australia, reveal diverse stromatolites that populated a partially restricted, low-energy shallow hypersaline basin. Molecular studies of extant bacteria hint that early chlorophyll-utilizing photosynthesizers required geochemical sources of reductants. Did these anoxygenic phototrophs once sustain an

  2. Malassezia spp. overgrowth in allergic cats.

    Science.gov (United States)

    Ordeix, Laura; Galeotti, Franca; Scarampella, Fabia; Dedola, Carla; Bardagí, Mar; Romano, Erica; Fondati, Alessandra

    2007-10-01

    A series of 18 allergic cats with multifocal Malassezia spp. overgrowth is reported: atopic dermatitis was diagnosed in 16, an adverse food reaction in another and one was euthanized 2 months after diagnosis of Malassezia overgrowth. All the cats were otherwise healthy and those tested (16 out of 18) for feline leukaemia or feline immunodeficiency virus infections were all negative. At dermatological examination, multifocal alopecia, erythema, crusting and greasy adherent brownish scales were variably distributed on all cats. Cytological examination revealed Malassezia spp. overgrowth with/without bacterial infection in facial skin (n = 11), ventral neck (n = 6), abdomen (n = 6), ear canal (n = 4), chin (n = 2), ear pinnae (n = 2), interdigital (n = 1) and claw folds skin (n = 1). Moreover, in two cats Malassezia pachydermatis was isolated in fungal cultures from lesional skin. Azoles therapy alone was prescribed in seven, azoles and antibacterial therapy in eight and azoles with both antibacterial and anti-inflammatory therapy in three of the cats. After 3-4 weeks of treatment, substantial reduction of pruritus and skin lesions was observed in all 11 cats treated with a combined therapy and in five of seven treated solely with azoles. Malassezia spp. overgrowth may represent a secondary cutaneous problem in allergic cats particularly in those presented for dermatological examination displaying greasy adherent brownish scales. The favourable response to treatment with antifungal treatments alone suggests that, as in dogs, Malassezia spp. may be partly responsible for both pruritus and cutaneous lesions in allergic cats.

  3. Genomics of Secondary Metabolism in Pseudomonas spp.

    Science.gov (United States)

    Pseudomonas is a heterogeneous genus of bacteria known for its ubiquity in natural habitats and its prolific production of secondary metabolites. The structurally diverse chemical structures produced by Pseudomonas spp. result from biosynthetic processes with unusual features that have revealed no...

  4. The case of Artemia spp. in nanoecotoxicology.

    Science.gov (United States)

    Libralato, Giovanni

    2014-10-01

    Artemia spp. is one of the most widespread saltwater organism suitable for ecotoxicity testing, but no internationally standardised methods exist. Several endpoints can be considered with Artemia spp. including short-term (24-48 h) and long-term (14 days) mortality, cysts and nauplii hatchability, biomass productivity, biomarkers' expression/inhibition and bioaccumulation on larvae as well as organisms' reproductive ability. Recently, Artemia spp. started to be used as a reference biological model in nanoecotoxicology with both inorganic and organic engineered nanomaterials (ENMs) also in combination with traditional environmental stressors looking for potential interactive effects. Criticisms were detected about the use of Artemia spp. in relation to the hatching phase, the toxicity test design, the occasional use only of reference toxicants and the way testing solution/suspensions were prepared thus potentially compromising the reliability of nanoecotoxicological results. A full list of compulsory information that must accompany Artemia nanoecotoxicity data is provided with positive feedbacks also for other toxicity bioassays.

  5. Characterization of Milkweed (Asclepias spp.) Seed Proteins

    Science.gov (United States)

    Milkweed (Asclepias spp.) is a crop grown mainly for the production of floss used as hypoallergenic fillers in comforters and pillows. The seeds end up as by-products. Milkweed seed contains 21% oil and 30% crude protein (dry basis). The oil is similar in quality to soybean oil, but there is no i...

  6. Induced systemic resistance by fluorescent Pseudomonas spp.

    NARCIS (Netherlands)

    Bakker, P.A.H.M.; Pieterse, C.M.J.; Loon, L.C. van

    2007-01-01

    Fluorescent Pseudomonas spp. have been studied for decades for their plant growth-promoting effects through effective suppression of soilborne plant diseases. The modes of action that play a role in disease suppression by these bacteria include siderophore-mediated competition for iron, antibiosis,

  7. Toward in vitro fertilization in Brachiaria spp.

    NARCIS (Netherlands)

    Dusi, D.; Alves, E.R.; Willemse, M.T.M.; Falcao, R.; Valle, do C.B.; Carneiro, V.T.C.

    2010-01-01

    Brachiaria are forage grasses widely cultivated in tropical areas. In vitro pollination was applied to accessions of Brachiaria spp. by placing pollen of non-dehiscent anthers on a solid medium near isolated ovaries. Viability and in vitro germination were tested in order to establish good condition

  8. Quantitative isolation of biocontrol agents Trichoderma spp., Gliocladium spp. and actinomycetes from soil with culture media.

    Science.gov (United States)

    Vargas Gil, S; Pastor, S; March, G J

    2009-01-01

    Soil biodiversity plays a key role in the sustainability of agriculture systems and indicates the level of health of soil, especially when considering the richness of microorganisms that are involved in biological control of soilborne diseases. Cultural practices may produce changes in soil microflora, which can be quantified through the isolation of target microorganisms. Rhizosphere soil samples were taken from an assay with different crop rotations and tillage systems, and populations of Trichoderma spp., Gliocladium spp. and actinomycetes were quantified in order to select the general and selective culture media that better reflect the changes of these microbial populations in soil. The most efficient medium for the isolation of Trichoderma spp. and Gliocladium spp. was potato dextrose agar modified by the addition of chloramphenicol, streptomycin and rose bengal, and for actinomycetes was Küster medium, with cycloheximide and sodium propionate.

  9. 21 CFR 866.3040 - Aspergillus spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Aspergillus spp. serological reagents. 866.3040... (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Serological Reagents § 866.3040 Aspergillus spp. serological reagents. (a) Identification. Aspergillus spp. serological reagents are devices...

  10. 21 CFR 866.3660 - Shigella spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Shigella spp. serological reagents. 866.3660... (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Serological Reagents § 866.3660 Shigella spp. serological reagents. (a) Identification. Shigella spp. serological reagents are devices that consist...

  11. 21 CFR 866.3870 - Trypanosoma spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Trypanosoma spp. serological reagents. 866.3870... (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Serological Reagents § 866.3870 Trypanosoma spp. serological reagents. (a) Identification. Trypanosoma spp. serological reagents are devices...

  12. 21 CFR 866.3415 - Pseudomonas spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Pseudomonas spp. serological reagents. 866.3415... (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Serological Reagents § 866.3415 Pseudomonas spp. serological reagents. (a) Identification. Pseudomonas spp. serological reagents are devices...

  13. Occurrence of Pasteuria spp. in the northeastern Spain

    OpenAIRE

    Verdejo Lucas, Soledad; Español Pons, Montserrat; Ornat Longarón, Cèsar; Sorribas Royo, Francisco Javier

    1997-01-01

    The occurrence of Pasteuria spp. In Spanish oils is reported. A total of 160 soil samples were collected from vegetable crops, kiwi and citrus orchards, and deciduous fruit trees. Bacteria were found associated with six nematode genera but they were only observed within females of Meloidogyne spp., second-stage juveniles and males of Tylenchulus semipenetrans, and juveniles of Pratylenchus spp.

  14. Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats

    OpenAIRE

    2012-01-01

    Microbial mats are often found in intertidal areas experiencing a large range of salinities. This study investigated the effect of changing salinities on nitrogenase activity and on the composition of the active diazotrophic community (nifH transcript libraries) of three types of microbial mats situated along a littoral gradient. All three mat types exhibited highest nitrogenase activity at salinities close to ambient seawater or lower. The response to lower or higher salinity was strongest i...

  15. The evolutionary trajectory of the mating-type (mat genes in Neurospora relates to reproductive behavior of taxa

    Directory of Open Access Journals (Sweden)

    Johannesson Hanna

    2008-04-01

    Full Text Available Abstract Background Comparative sequencing studies among a wide range of taxonomic groups, including fungi, have led to the discovery that reproductive genes evolve more rapidly than other genes. However, for fungal reproductive genes the question has remained whether the rapid evolution is a result of stochastic or deterministic processes. The mating-type (mat genes constitute the master regulators of sexual reproduction in filamentous ascomycetes and here we present a study of the molecular evolution of the four mat-genes (mat a-1, mat A-1, mat A-2 and mat A-3 of 20 Neurospora taxa. Results We estimated nonsynonymous and synonymous substitution rates of genes to infer their evolutionary rate, and confirmed that the mat-genes evolve rapidly. Furthermore, the evolutionary trajectories are related to the reproductive modes of the taxa; likelihood methods revealed that positive selection acting on specific codons drives the diversity in heterothallic taxa, while among homothallic taxa the rapid evolution is due to a lack of selective constraint. The latter finding is supported by presence of stop codons and frame shift mutations disrupting the open reading frames of mat a-1, mat A-2 and mat A-3 in homothallic taxa. Lower selective constraints of mat-genes was found among homothallic than heterothallic taxa, and comparisons with non-reproductive genes argue that this disparity is not a nonspecific, genome-wide phenomenon. Conclusion Our data show that the mat-genes evolve rapidly in Neurospora. The rapid divergence is due to either adaptive evolution or lack of selective constraints, depending on the reproductive mode of the taxa. This is the first instance of positive selection acting on reproductive genes in the fungal kingdom, and illustrates how the evolutionary trajectory of reproductive genes can change after a switch in reproductive behaviour of an organism.

  16. Mats made from fibronectin support oriented growth of axons in the damaged spinal cord of the adult rat.

    Science.gov (United States)

    King, Von R; Henseler, Manuel; Brown, Robert A; Priestley, John V

    2003-08-01

    A variety of biological as well as synthetic implants have been used to attempt to promote regeneration into the damaged spinal cord. We have implanted mats made from fibronectin (FN) into the damaged spinal cord to determine their effectiveness as a substrate for regeneration of axons. These mats contain oriented pores and can take up and release growth factors. Lesion cavities 1 mm in width and depth and 2 mm in length were created on one side of the spinal cord of adult rats. FN mats containing neurotrophins or saline were placed into the lesion. Mats were well integrated into surrounding tissue and showed robust well-oriented growth of calcitonin gene-related peptide, substance P, GABAergic, cholinergic, glutamatergic, and noradrenergic axons into FN mats. Transganglionic tracing using cholera toxin B indicated large-diameter primary afferents had grown into FN implants. Schwann cells had also infiltrated FN mats. Electron microscopy confirmed the presence of axons within implants sites, with most axons either ensheathed or myelinated by Schwann cells. Mats incubated in brain-derived neurotrophic factor and neurotrophin-3 showed significantly more neurofilament-positive and glutamatergic fibers compared to saline- and nerve growth factor-incubated mats, while mats incubated with nerve growth factor showed more calcitonin gene-related peptide-positive axons. In contrast, neurotrophin treatment had no effect on PGP 9.5-positive axons. In addition, in some animals with neurotrophin-3-incubated mats, cholera toxin B-labelled fibers had grown from the mat into adjoining intact areas of spinal cord. The results indicate that FN mats provide a substrate that is permissive for robust oriented axonal growth in the damaged spinal cord, and that this growth is supported by Schwann cells.

  17. Russian Army Mat as a Code System Controlling Behaviour in the Russian army

    Directory of Open Access Journals (Sweden)

    Vadim Mikhailin

    2004-09-01

    Full Text Available This text is to be a shortened, restructured and based on somewhat another factological foundation version of my article “Russkii mat kak muzhskoi obstsennyi kod: problema proiskhozhdeniia i evoliutsiia statusa”, published in # 43 of Novoe Literaturnoe Obozrenie. Tracing the genesis of mat to the specific modes of behaviour, peculiar to the archaic male warrior bands, I’m going to show that the military milieu (and some other, structurally close to it social strata, has always been – and remain – absolutely adequate for the mat speaking. Moreover, mat has always carried on within these strata rather specific function connected with creating of one’s identity as a military, and its use offers various and sometimes the only possible means of impact at one’s equal or subordinate (or even superior. As a matter of fact, mat is a basis for a whole code system, controlling different military behaviour practices. The problems of the freshers’ adaptation and of the national specificities in the late Soviet and modern Russian army are to be considered with special respect.

  18. Lipids of recently-deposited algal mats at Laguna Mormona, Baja California

    Science.gov (United States)

    Cardoso, J.; Brooks, P. W.; Eglinton, G.; Goodfellow, R.; Maxwell, J. R.; Philp, R. P.

    1976-01-01

    A preliminary survey of the lipid composition of the core of a recently deposited algal mat of a subtropical, hypersaline coastal pond is described. Two layers of the core were examined: the upper, 2-cm-thick layer, comprising the fresh algal mat of predominantly the blue-green species Microcoleus chthonoplastes, and the black anaerobic algal ooze at a depth of 10 cm. About 75% of the n-alkanes in the mat were accounted for by n-C17, with smaller amounts of higher homologues maximizing at n-C27. The ooze was characterized by a bimodal distribution with maxima at n-C17 and n-C27. The n-alkanoic acids distributions were similar to the corresponding n-alkane distributions. A marked decrease in the ratio of monounsaturated to saturated acids in the ooze relative to the mat was observed, which indicates a preferential removal of unsaturated components. Certain triterpenes of the hopane skeletal type were present in the mat and ooze. The presence of stanols and sterenes in the ooze with similar carbon number distributions suggests a relationship between them.

  19. Effects of Elevated Carbon Dioxide and Salinity on the Microbial Diversity in Lithifying Microbial Mats

    Directory of Open Access Journals (Sweden)

    Steven R. Ahrendt

    2014-03-01

    Full Text Available Atmospheric levels of carbon dioxide (CO2 are rising at an accelerated rate resulting in changes in the pH and carbonate chemistry of the world’s oceans. However, there is uncertainty regarding the impact these changing environmental conditions have on carbonate-depositing microbial communities. Here, we examine the effects of elevated CO2, three times that of current atmospheric levels, on the microbial diversity associated with lithifying microbial mats. Lithifying microbial mats are complex ecosystems that facilitate the trapping and binding of sediments, and/or the precipitation of calcium carbonate into organosedimentary structures known as microbialites. To examine the impact of rising CO2 and resulting shifts in pH on lithifying microbial mats, we constructed growth chambers that could continually manipulate and monitor the mat environment. The microbial diversity of the various treatments was compared using 16S rRNA gene pyrosequencing. The results indicated that elevated CO2 levels during the six month exposure did not profoundly alter the microbial diversity, community structure, or carbonate precipitation in the microbial mats; however some key taxa, such as the sulfate-reducing bacteria Deltasulfobacterales, were enriched. These results suggest that some carbonate depositing ecosystems, such as the microbialites, may be more resilient to anthropogenic-induced environmental change than previously thought.

  20. Sulfate Reduction and Thiosulfate Transformations in a Cyanobacterial Mat during a Diel Oxygen Cycle

    DEFF Research Database (Denmark)

    JØRGENSEN, BB

    1994-01-01

    Bacterial sulfate reduction and transformations of thiosulfate were studied with radiotracers in a Microcoleus chthono-plastes-dominated microbial mat growing in a hypersaline pond at the Red Sea. The study showed how a diel cycle of oxygen evolution affected respiration by sulfate-reducing bacte......Bacterial sulfate reduction and transformations of thiosulfate were studied with radiotracers in a Microcoleus chthono-plastes-dominated microbial mat growing in a hypersaline pond at the Red Sea. The study showed how a diel cycle of oxygen evolution affected respiration by sulfate......-reducing bacteria and the metabolism of thiosulfate through oxidative and reductive pathways. Sulfate reduction occurred in both oxic and anoxic layers of the mat and varied diurnally, apparently according to temperature rather than to oxygen. Time course experiments showed that the radiotracer method...... of the mat, there was a shift from predominant oxidation in the oxic zone to predominant reduction below. Concurrent disproportionation of thiosulfate to sulfate and sulfide occurred in all zones and was an important pathway of the sulfur cycle in the mat....

  1. Rapid Reactivation of Cyanobacterial Photosynthesis and Migration upon Rehydration of Desiccated Marine Microbial Mats

    KAUST Repository

    Chennu, Arjun

    2015-12-24

    Desiccated cyanobacterial mats are the dominant biological feature in the Earth’s arid zones. While the response of desiccated cyanobacteria to rehydration is well-documented for terrestrial systems, information about the response in marine systems is lacking. We used high temporal resolution hyperspectral imaging, liquid chromatography, pulse-amplitude fluorometry, oxygen microsensors, and confocal laser microscopy to study this response in a desiccated microbial mat from Exmouth Gulf, Australia. During the initial 15 min after rehydration chlorophyll a concentrations increased 2–5 fold and cyanobacterial photosynthesis was re-established. Although the mechanism behind this rapid increase of chlorophyll a remains unknown, we hypothesize that it involves resynthesis from a precursor stored in desiccated cyanobacteria. The subsequent phase (15 min–48 h) involved migration of the reactivated cyanobacteria toward the mat surface, which led, together with a gradual increase in chlorophyll a, to a further increase in photosynthesis. We conclude that the response involving an increase in chlorophyll a and recovery of photosynthetic activity within minutes after rehydration is common for cyanobacteria from desiccated mats of both terrestrial and marine origin. However, the response of upward migration and its triggering factor appear to be mat-specific and likely linked to other factors.

  2. Rapid reactivation of cyanobacterial photosynthesis and migration upon rehydration of desiccated marine microbial mats

    Directory of Open Access Journals (Sweden)

    Arjun eChennu

    2015-12-01

    Full Text Available Desiccated cyanobacterial mats are the dominant biological feature in the Earth's arid zones. While the response of desiccated cyanobacteria to rehydration is well documented for terrestrial systems, information about the response in marine systems is lacking. We used high temporal resolution hyperspectral imaging, liquid chromatography, pulse-amplitude fluorometry, oxygen microsensors and confocal laser microscopy to study this response in a desiccated microbial mat from Exmouth Gulf, Australia. During the initial 15 minutes after rehydration chlorophyll a concentrations increased 2-5 fold and cyanobacterial photosynthesis was re-established. Although the mechanism behind this rapid increase of chlorophyll a remains unknown, we hypothesize that it involves resynthesis from a precursor stored in desiccated cyanobacteria. The subsequent phase (15 min – 48 h involved migration of the reactivated cyanobacteria towards the mat surface, which led, together with a gradual increase in chlorophyll a, to a further increase in photosynthesis. We conclude that the response involving an increase in chlorophyll a and recovery of photosynthetic activity within minutes after rehydration is common for cyanobacteria from desiccated mats of both terrestrial and aquatic origin. However the response of upward migration and its triggering factor appears to be mat-specific and likely linked to other factors.

  3. Methane-Oxidizing Bacteria Shunt Carbon to Microbial Mats at a Marine Hydrocarbon Seep

    Science.gov (United States)

    Paul, Blair G.; Ding, Haibing; Bagby, Sarah C.; Kellermann, Matthias Y.; Redmond, Molly C.; Andersen, Gary L.; Valentine, David L.

    2017-01-01

    The marine subsurface is a reservoir of the greenhouse gas methane. While microorganisms living in water column and seafloor ecosystems are known to be a major sink limiting net methane transport from the marine subsurface to the atmosphere, few studies have assessed the flow of methane-derived carbon through the benthic mat communities that line the seafloor on the continental shelf where methane is emitted. We analyzed the abundance and isotope composition of fatty acids in microbial mats grown in the shallow Coal Oil Point seep field off Santa Barbara, CA, USA, where seep gas is a mixture of methane and CO2. We further used stable isotope probing (SIP) to track methane incorporation into mat biomass. We found evidence that multiple allochthonous substrates supported the rich growth of these mats, with notable contributions from bacterial methanotrophs and sulfur-oxidizers as well as eukaryotic phototrophs. Fatty acids characteristic of methanotrophs were shown to be abundant and 13C-enriched in SIP samples, and DNA-SIP identified members of the methanotrophic family Methylococcaceae as major 13CH4 consumers. Members of Sulfuricurvaceae, Sulfurospirillaceae, and Sulfurovumaceae are implicated in fixation of seep CO2. The mats’ autotrophs support a diverse assemblage of co-occurring bacteria and protozoa, with Methylophaga as key consumers of methane-derived organic matter. This study identifies the taxa contributing to the flow of seep-derived carbon through microbial mat biomass, revealing the bacterial and eukaryotic diversity of these remarkable ecosystems.

  4. Jet Shaping Nanofibers and the Collection of Nanofiber Mats in Electrospinning

    Institute of Scientific and Technical Information of China (English)

    Xinwei WANG; Jin CAO; Zuming HU; Wanlian PAN; Zhaofeng LIU

    2006-01-01

    Electrospinning is an effective way to produce nanofibers. Theconcentration or the corresponding viscosity of the spin solution is one of the most important variables to control the fiber morphology in electrospinning. Jet shaping nanofibers might be divided in two operating modes for different solution viscosity: split thinning and single thinning. From the analysis of jet single thinning, an equation to calculate the velocity of nanofibers depositing on the collector was educed and it was found that the velocity range was very different from the reported result. For the electrospun mats obtained from low solution concentration, the split is observed by scanning electron microscopy (SEM) images. On the other hand, the beads formation in the nanofiber mats can be explained well by jet splitting. The arrangement of nanofibers in the mats is related to the methods of collection, and the cylinder collector gets more ordered mats. This result is proved by so-called break strengths testing and SEM images of the mats obtained from different methods of collection.

  5. Growth, composition and metal removal potential of a Phormidium bigranulatum-dominated mat at elevated levels of cadmium.

    Science.gov (United States)

    Kumar, Dhananjay; Yadav, Arpana; Gaur, J P

    2012-07-15

    Prompted by the fact that interaction of metals with cyanobacterial mats has been little studied, the present study evaluates the response of a cyanobacterial mat, dominated by Phormidium bigranulatum, to elevated concentrations of Cd²⁺ in the medium. The mat failed to grow at 7 μM of Cd²⁺ when the metal as also the mat inoculum were simultaneously added to the medium right in the beginning of the experiment due to marked sensitivity of P. bigranulatum, the main constituent of the mat, to high concentrations of Cd²⁺. However, the mat previously grown in Cd²⁺-free medium for a time period of 1-4 weeks grew successfully when exposed to media containing very high concentrations of Cd²⁺. Four-week-old mat could grow at 250 μM of Cd²⁺, which has been found toxic to many cyanobacteria and algae by previous researchers. Greater tolerance of older mats to Cd²⁺ may be due to greater proportion of exopolysaccharides, which are well known to sequester metal ions extracellularly, in them. Whereas the relative proportion of P. bigranulatum declined at high concentrations of the test metal that of green algae increased due most likely to their tolerance to Cd²⁺. Air bubbles were seen entrapped in the mat due obviously to photosynthetic activity. Elevated concentrations of Cd²⁺ reduced the number of air bubbles in the mat. Decline in number of air bubbles at high concentrations of metal ions was more prominent in the case of younger mat than in the older one. The present study also evaluated changes in species composition of mats of different age that were subsequently grown in Cd²⁺ enriched culture medium. Younger mats showed change in species composition at very low concentrations of Cd²⁺, but older mats showed little changes even at very high concentrations of the test metal. Hence older mats more strongly resisted to changes in its species composition than the younger ones upon exposure to high concentrations of Cd²⁺. The growing mat

  6. Community structure of free-floating filamentous cyanobacterial mats from the Wonder Lake geothermal springs in the Philippines.

    Science.gov (United States)

    Lacap, Donnabella C; Smith, Gavin J D; Warren-Rhodes, Kimberley; Pointing, Stephen B

    2005-07-01

    Cyanobacterial mats were characterized from pools of 45-60 degrees C in near-neutral pH, low-sulphide geothermal springs in the Philippines. Mat structure did not vary with temperature. All mats possessed highly ordered layers of airspaces at both the macroscopic and microscopic level, and these appear to be an adaptation to a free-floating growth habit. Upper mat layers supported biomass with elevated carotenoid:chlorophyll a ratios and an as yet uncharacterized waxy layer on the dorsal surface. Microscopic examination revealed mats comprised a single Fischerella morphotype, with abundant heterocysts throughout mats at all temperatures. Molecular analysis of mat community structure only partly matched morphological identification. All samples supported greater 16S rDNA-defined diversity than morphology suggested, with a progressive loss in the number of genotypes with increasing temperature. Fischerella-like sequences were recovered from mats occurring at all temperatures, but some mats also yielded Oscillatoria-like sequences, although corresponding phenotypes were not observed. Phylogenetic analysis revealed that Fischerella-like sequences were most closely affiliated with Fischerella major and the Oscillatoria-like sequences with Oscillatoria amphigranulata.

  7. Small rodents as reservoirs of Cryptosporidium spp. and Giardia spp. in south-western Poland.

    Science.gov (United States)

    Perec-Matysiak, Agnieszka; Buńkowska-Gawlik, Katarzyna; Zaleśny, Grzegorz; Hildebrand, Joanna

    2015-01-01

    Cryptosporidium spp. and Giardia spp. have been detected in a range of host species, including rodents. The aim of this study was to determine the distribution of these pathogens and recognition of the reservoir role of rodents in the maintenance of these pathogens in south-western Poland. Additionally, preliminary molecular studies were conducted to elucidate the species and genotypes of Cryptosporidium and Giardia identified in this study. Stool samples (n=266) from A. agrarius, A. flavicollis and M. glareolus, were subjected for analyses. Values of prevalence were 61.7, 68.3 and 68.1%, respectively, for Cryptosporidium spp. and 41.7, 24.4 and 38.4%, respectively, for Giardia spp. There was a statistically significant correlation between host species and Giardia infection where A. agrarius was the species of the highest prevalence. Statistically significant differences were not found for comparisons made for study sites and occurrence of Giardia spp. and Cryptosporidium spp. Due to preliminary nested PCR results, specific amplifications of Cryptosporidium COWP and SSU rRNA genes were obtained for several isolates taken from rodent host species. One isolate recovered from A. agrarius (from a semi-aquatic, urban area) was identified as C. parvum and revealed 100% similarity with sequences obtained from humans. To the best of the knowledge of the authors, this is the first record of the C. parvum zoonotic species from the striped field mouse. Also recorded were the first findings of C. ubiquitum from three small rodent species.

  8. Presence of Staphylococcus spp. and Candida spp. in the human oral cavity

    Directory of Open Access Journals (Sweden)

    Martins Clélia Aparecida de Paiva

    2002-01-01

    Full Text Available The presence of yeasts and staphylococci in the oral cavity is important because they can act as supplementary microbiota and in certain situations can cause oral or systemic diseases. The aim of this work was to study the prevalence of Candida spp. and Staphylococcus spp. in the human oral cavity. Oral rinses were collected from sixty-eight individuals according to the technique described by Samaranayake and MacFarlane and then cultured on Sabouraud medium supplemented with chloramphenicol and Baird-Parker agar. After the incubation period, the microorganisms were isolated and identified through biochemical tests. The data obtained were statistically analysed by ANOVA. Candida spp. were isolated from 61.76% of the examined individuals and C. albicans was the more frequently isolated specie. Staphylococcus spp. were isolated from 95.60% of the individuals and 41 strains were coagulase negative (63%. Among the coagulase positive strains, nine were S. aureus, 11 S. hyicus and 4 S. schleiferi subspecie coagulans. No correlation was observed between the counts (cfu of the isolated Candida spp. and Staphylococcus spp.

  9. Gro2mat: a package to efficiently read gromacs output in MATLAB.

    Science.gov (United States)

    Dien, Hung; Deane, Charlotte M; Knapp, Bernhard

    2014-07-30

    Molecular dynamics (MD) simulations are a state-of-the-art computational method used to investigate molecular interactions at atomic scale. Interaction processes out of experimental reach can be monitored using MD software, such as Gromacs. Here, we present the gro2mat package that allows fast and easy access to Gromacs output files from Matlab. Gro2mat enables direct parsing of the most common Gromacs output formats including the binary xtc-format. No openly available Matlab parser currently exists for this format. The xtc reader is orders of magnitudes faster than other available pdb/ascii workarounds. Gro2mat is especially useful for scientists with an interest in quick prototyping of new mathematical and statistical approaches for Gromacs trajectory analyses. © 2014 Wiley Periodicals, Inc.

  10. A Matérn model of the spatial covariance structure of point rain rates

    KAUST Repository

    Sun, Ying

    2014-07-15

    It is challenging to model a precipitation field due to its intermittent and highly scale-dependent nature. Many models of point rain rates or areal rainfall observations have been proposed and studied for different time scales. Among them, the spectral model based on a stochastic dynamical equation for the instantaneous point rain rate field is attractive, since it naturally leads to a consistent space–time model. In this paper, we note that the spatial covariance structure of the spectral model is equivalent to the well-known Matérn covariance model. Using high-quality rain gauge data, we estimate the parameters of the Matérn model for different time scales and demonstrate that the Matérn model is superior to an exponential model, particularly at short time scales.

  11. Estimation of axial stiffness of plant fibres from compaction of non-woven mats

    Science.gov (United States)

    Gamstedt, E. K.; Bommier, E.; Madsen, B.

    2014-03-01

    Plant fibres are known to show a large variability in stiffness, which makes it time-consuming to experimentally characterize this property by conventional tensile testing. In this work, an alternative method is used, where the average fibre stiffness is back-calculated from compaction tests of in-plane randomly oriented fibre mats. The model by Toll is used to relate the load-displacement curve from the test to the Young modulus of the fibre, taking into account the natural variability in fibre cross section. Several tests have been performed on hemp fibre mats and compared with results from single-fibre tensile testing. The average back-calculated Young's modulus of the fibres was 45 GPa, whereas the average value from tensile testing ranged from 30 to 60 GPa. The straightforward compaction test can be useful in ranking of fibre stiffness, provided that the mat is composed of well-separated fibres and not of twisted yarns.

  12. Estimation of axial stiffness of plant fibres from compaction of non-woven mats

    DEFF Research Database (Denmark)

    Gamstedt, E. K.; Bommier, E.; Madsen, Bo

    2014-01-01

    -plane randomly oriented fibre mats. The model by Toll is used to relate the load-displacement curve from the test to the Young modulus of the fibre, taking into account the natural variability in fibre cross section. Several tests have been performed on hemp fibre mats and compared with results from single......Plant fibres are known to show a large variability in stiffness, which makes it time-consuming to experimentally characterize this property by conventional tensile testing. In this work, an alternative method is used, where the average fibre stiffness is back-calculated from compaction tests of in......-fibre tensile testing. The average back-calculated Young's modulus of the fibres was 45 GPa, whereas the average value from tensile testing ranged from 30 to 60 GPa. The straightforward compaction test can be useful in ranking of fibre stiffness, provided that the mat is composed of well-separated fibres...

  13. Antimicrobial wound dressing nanofiber mats from multicomponent (chitosan/silver-NPs/polyvinyl alcohol) systems.

    Science.gov (United States)

    Abdelgawad, Abdelrahman M; Hudson, Samuel M; Rojas, Orlando J

    2014-01-16

    Novel hybrid nanomaterials have been developed for antimicrobial applications. Here we introduce a green route to produce antibacterial nanofiber mats loaded with silver nanoparticles (Ag-NPs, 25 nm diameter) enveloped in chitosan after reduction with glucose. The nanofiber mats were obtained from colloidal dispersions of chitosan-based Ag-NPs blended with polyvinyl alcohol. Nanofibers (150 nm average diameter and narrow size distribution) were obtained by electrospinning and cross-linked with glutaraldhyde. The effect of crosslinking on the release of silver was studied by atomic absorption spectroscopy. Antimicrobial activity was studied by the viable cell-counting; mats loaded with silver and control samples (chitosan/PVA) with different degrees of cross-linking were compared for their effectiveness in reducing or halting the growth of aerobic bacteria. The results showed superior properties and synergistic antibacterial effects by combining chitosan with Ag-NPs.

  14. Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain

    DEFF Research Database (Denmark)

    Polerecky, Lubos; Bachar, Ami; Schoon, Raphaela;

    2007-01-01

    In dense stratified systems such as microbial mats, photosynthesis and respiration are coupled due to a tight spatial overlap between oxygen-producing and -consuming microorganisms. We combined microsensors and a membrane inlet mass spectrometer with two independent light sources emitting...... in the visible (VIS) and near infrared (NIR) regions to study this coupling in more detail. Using this novel approach, we separately quantified the activity of the major players in the oxygen cycle in a hypersaline microbial mat: gross photosynthesis of cyanobacteria, NIR light-dependent respiration...... of Chloroflexus-like bacteria (CLB) and respiration of aerobic heterotrophs. Illumination by VIS light induced oxygen production in the top 1 mm of the mat. In this zone CLB were found responsible for all respiration, while the contribution of the aerobic heterotrophs was negligible. Additional illumination...

  15. A novel method for preparing the antibacterial glass fibre mat using laser treatment

    Science.gov (United States)

    Wiener, Jakub; Shahidi, Sheila; Mkhululi Goba, Makabongwe; Šašková, Jana

    2014-02-01

    In this study, CO2 laser treatment was used as a novel method for creating antibacterial properties on glass mat. Different metallic salts such as CuO, ZnO and AgNO3 were even applied on surface of glass fiber mat, then irradiated with the laser light beam (100 μs). Metal particles were deposited on the surface of samples, and the antibacterial has been developed, through incorporation of metal particles on glass mats. The antibacterial properties of the fabrics were connected with the presence of metal particles on their surface. The amounts of metal particles on the surface were compared using X-ray fluorescence (XRF) and energy dispersive X-ray spectrometer (EDS). Also the morphological properties of the fabrics were observed using a scanning electron microscope (SEM). The experimental work suggests that the change in properties induced by laser can effect an improvement in certain textile products.

  16. Deposition of Biogenic Iron Minerals in a Methane Oxidizing Microbial Mat

    Directory of Open Access Journals (Sweden)

    Christoph Wrede

    2013-01-01

    Full Text Available The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  17. Deposition of biogenic iron minerals in a methane oxidizing microbial mat.

    Science.gov (United States)

    Wrede, Christoph; Kokoschka, Sebastian; Dreier, Anne; Heller, Christina; Reitner, Joachim; Hoppert, Michael

    2013-01-01

    The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  18. DNA Barcoding of Sangihe Nutmeg (Myristica fragrans using matK Gene

    Directory of Open Access Journals (Sweden)

    TRINA EKAWATI TALLEI

    2015-01-01

    Full Text Available Nutmeg (family: Myristicaceae is a plant that originated from Banda islands and is widely cultivated in several places in the world. Secondary metabolites of this plant have a high value because of their benefits for the health, food, and beauty industries. This study aims at developing DNA barcode for nutmeg (Myristica fragrans using standard recommended fragment of matK (maturase K gene. Universal matK primer pairs were used to amplify 889 bp DNA fragment. BLAST search from NCBI site showed that Sangihe nutmeg has 100% identity with Myristica fatua, M. maingayi, and M. globosa. It also has 3 nucleotides difference with Rivola sebifera (identity 99.58% and 4 nucleotides difference with Knema laurina (identity 99.43%. It can be inferred from this study that single locus of matK gene cannot be used to differentiate species in Myristica; it can only be used to differentiate the genus level within family Myristicaceae.

  19. Superhydrophobic PVDF and PVDF-HFP nanofibrous mats with antibacterial and anti-biofouling properties

    Science.gov (United States)

    Spasova, M.; Manolova, N.; Markova, N.; Rashkov, I.

    2016-02-01

    Superhydrophobic nanofibrous materials of poly(vinylidene fluoride) (PVDF) and poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-HFP) were prepared by one-pot electrospinning technique. The mats were decorated with ZnO nanoparticles with silanized surface and a model drug - 5-chloro-8-hydroxyquinolinol (5Cl8HQ). The obtained hybrid nanofibrous materials were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), contact angle measurements, mechanical and microbiological tests. The results showed that the incorporation of ZnO nanoparticles into PVDF and PVDF-HFP nanofibers increased the hydrophobicity (contact angle 152°), improved the thermal stability and imparted to the nanofibrous materials anti-adhesive and antimicrobial properties. The mats containing the model drug possessed antibacterial activity against Escherichia coli and Staphylococcus aureus. The results suggested that the obtained hybrid mats could find potential biomedical applications requiring antibacterial and anti-biofouling properties.

  20. Serological Evidence of Exposure to Leptospira spp. in Veterinary Students and Other University Students in Trinidad and Tobago

    Directory of Open Access Journals (Sweden)

    Ambrose James

    2013-01-01

    Full Text Available The study compared the serological evidence of leptospirosis in 212 students in four schools (veterinary, dental, advanced nursing education and pharmacy of the University of the West Indies (UWI, by testing for IgG immunoglobulins to Leptospira spp. using the enzyme-linked immunosorbent assay (ELISA and the microscopic agglutination test (MAT. Overall, of 212 students tested by the ELISA, 12 (5.7% and 31 (14.6% were positive and borderline, respectively. Amongst the 113 veterinary students 11 (9.7% and 19 (16.8% were seropositive and borderline respectively compared with nonveterinary students with corresponding values of 1 (1.0% and 12 (12.1%. The frequency of serological evidence of leptospirosis by the ELISA was statistically significantly (; higher in veterinary students, 26.5% (30 of 113 than in nonveterinary students, 13.1% (13 of 99. By the MAT, the seropositivity for leptospirosis was similar for veterinary students, 7.1% (8 of 113 and nonveterinary students, 7.1% (7 of 99. For veterinary students, the prevalent infecting serovar was Icterohaemorrhagiae Copenhageni while amongst nonveterinary students, the prevalent serovar was Australis Rachmati. Being a veterinary student was the only risk factor that was significantly associated with Leptospira infection indicating that veterinary students need to be cognizant and to practise preventive measures for leptospirosis.

  1. Spatial patterns and links between microbial community composition and function in cyanobacterial mats

    KAUST Repository

    Alnajjar, Mohammad Ahmad

    2014-08-06

    We imaged reflectance and variable fluorescence in 25 cyanobacterial mats from four distant sites around the globe to assess, at different scales of resolution, spatial variabilities in the physiological parameters characterizing their photosynthetic capacity, including the absorptivity by chlorophyll a (Achl), maximum quantum yield of photosynthesis (Ymax), and light acclimation irradiance (Ik). Generally, these parameters significantly varied within individual mats on a sub-millimeter scale, with about 2-fold higher variability in the vertical than in the horizontal direction. The average vertical profiles of Ymax and Ik decreased with depth in the mat, while Achl exhibited a sub-surface maximum. The within-mat variability was comparable to, but often larger than, the between-sites variability, whereas the within-site variabilities (i.e., between samples from the same site) were generally lowest. When compared based on averaged values of their photosynthetic parameters, mats clustered according to their site of origin. Similar clustering was found when the community composition of the mats\\' cyanobacterial layers were compared by automated ribosomal intergenic spacer analysis (ARISA), indicating a significant link between the microbial community composition and function. Although this link is likely the result of community adaptation to the prevailing site-specific environmental conditions, our present data is insufficient to identify the main factors determining these patterns. Nevertheless, this study demonstrates that the spatial variability in the photosynthetic capacity and light acclimation of benthic phototrophic microbial communities is at least as large on a sub-millimeter scale as it is on a global scale, and suggests that this pattern of variability scaling is similar for the microbial community composition. © 2014 Al-Najjar, Ramette, Kühl, Hamza, Klatt and Polerecky.

  2. Caryophyllales: Evaluating phylogenetic signal in trnK intron versus matK

    Institute of Scientific and Technical Information of China (English)

    Sunny S. CRAWLEY; Khidir W. HILU

    2012-01-01

    We assess the phylogenetic information in trnK intron at the ordinal level using the Caryophyllales and compare it with that derived from matK.The trnK gene is split into two exons by an intron that includes the matK gene.The plastid trnK is a tRNA gene encoding Lysine(UUU),whereas the matK gene is a putative group Ⅱ intron maturase.The two regions are usually coamplified,and trnK intron is partially sequenced but its sequences are often excluded from phylogenetic reconstruction at deep historic levels.This study shows that the two regions are comparable in proportion of variable sites,possess a comparable pattern of substitution rates per site,and display similar phylogenetic informativeness profiles and per-site informativeness.Phylogenetic analyses show strong congruence between phylogenetic trees based on matK and trnK intron partitioned datasets from 45 genera representing 30 of the 34 recognized Caryophyllales families.The trnK intron alone provides a relatively well-resolved topology for the order.Combining the trnK intron with matK sequence data resulted in six most parsimonious trees,differing only in the placement of Claytonia (Portulacaceae) within the noncore group.A well-supported major basal split in the order into core and noncore Caryophyllales with Rhabdodendraceae,Simmondsiaceae,and Asteropeiaceae as sister to remaining core lineages is evident in partitioned and combined analyses.The placement of these three families has been disputable,impacting the overall backbone topology of the Caryophyllales.This study demonstrates the cost effectiveness of using the trnK intron along with matK (both substitutions and insertions/deletions) at deeper phylogenetic level.

  3. Electrospun Cellulose Acetate Fiber Mats as Carriers for Crude Extracts From Phyllanthus Emblica Linn. Fruits

    Directory of Open Access Journals (Sweden)

    Thitiwongsawet Patcharaporn

    2016-01-01

    Full Text Available Fruit of Phyllanthus emblica Linn (PE was extracted with methanol and then partitioned into diethyl ether, ethyl acetate, butanol, and water fractions. The diethyl ether fraction showed the highest antibacterial activity against two pathogenic bacteria including Escherichia coli (ATCC 25922 and Staphylococcus aureus (ATCC 25923. The PE extract from diethyl ether fraction was then loaded into 17%w/v cellulose acetate (CA solution prepared in 2:1 v/v acetone/N, N-dimethylacetamide at concentrations of 1, 3, and 5% w/w (based on the weight of CA. The PE extract-loaded electrospun CA fiber mats were fabricated by electrospinning. The morphological appearance of both the neat and the PE extract-loaded electrospun CA fibers were smooth with the average diameters in a range of 335-694 nm. The amounts of water retention and release characteristics of PE extract from fiber mats in an acetate buffer (pH 5.5 were studied and compared with the corresponding cast-films fabricated by the solvent casting method. The amount of water retention of the PE extract-loaded fiber mats was about 112-205% which was higher than that of the cast films (i.e. 25-35%. The study of release characteristics of PE extract from fiber mats and films was carried out by total immersion method in an acetate buffer at 32°C for 72 h. The PE extract-loaded fiber mats exhibited greater amount of extract released than those of the cast films. The maximum amounts of PE extract released from fiber mats and films were about 40-80% and 18-23%, respectively.

  4. Preparation of Sulfonated Poly(aryl ether sulfone) Electrospun Mat/Phosphosilicate Composite Proton Exchange Membrane

    Science.gov (United States)

    Wang, Limei; Dou, Liyan; Guan, Guoying

    2017-01-01

    Side-chain-type sulfonated poly(aryl ether sulfone) (SPES) was synthesized and then electrospun into mats. Phosphosilicate glass (PS) via in situ sol-gel synthesis was enclosed in the mats to form a new reinforced composite membrane. The SPES/PS composite membranes showed satisfactory dimensional change behavior with varying humidity. Especially, the composite membrane exhibits excellent proton conductivity at harsh measurement conditions of low humidity at 80°C. The composite membrane with outstanding combined properties has potential applications for high temperature polymer electrolyte membrane fuel cells.

  5. MatMCNP: A Code for Producing Material Cards for MCNP

    Energy Technology Data Exchange (ETDEWEB)

    DePriest, Kendall Russell [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Saavedra, Karen C. [American Structurepoint, Inc., Indianapolis, IN (United States)

    2014-09-01

    A code for generating MCNP material cards (MatMCNP) has been written and verified for naturally occurring, stable isotopes. The program allows for material specification as either atomic or weight percent (fractions). MatMCNP also permits the specification of enriched lithium, boron, and/or uranium. In addition to producing the material cards for MCNP, the code calculates the atomic (or number) density in atoms/barn-cm as well as the multiplier that should be used to convert neutron and gamma fluences into dose in the material specified.

  6. Preparation of Sulfonated Poly(aryl ether sulfone) Electrospun Mat/Phosphosilicate Composite Proton Exchange Membrane

    Science.gov (United States)

    Wang, Limei; Dou, Liyan; Guan, Guoying

    2017-03-01

    Side-chain-type sulfonated poly(aryl ether sulfone) (SPES) was synthesized and then electrospun into mats. Phosphosilicate glass (PS) via in situ sol-gel synthesis was enclosed in the mats to form a new reinforced composite membrane. The SPES/PS composite membranes showed satisfactory dimensional change behavior with varying humidity. Especially, the composite membrane exhibits excellent proton conductivity at harsh measurement conditions of low humidity at 80°C. The composite membrane with outstanding combined properties has potential applications for high temperature polymer electrolyte membrane fuel cells.

  7. Contradicción, coherencia y compromiso: Matías Usero Torrente

    Directory of Open Access Journals (Sweden)

    Tezanos Gandarillas, Marisa

    2001-06-01

    Full Text Available The current article studies the figure of Matías Usero Torrente. His thought is considered by the author as a preceding of the principals ideas that emphasized about the relations between State and Society during the sixties in Spain.

    En el presente artículo se analiza la figura de Matías Usero Torrente. Su pensamiento es considerado por la autora del estudio como antecesor de las principales ideas que sobre las relaciones de la Iglesia con el Estado y la Sociedad cristalizaron en la década de los 60 en España.

  8. NanoSIP: Developing Community Imaging for Phylogenetic and Functional Characterization Using Cyanobacterial Mats

    Energy Technology Data Exchange (ETDEWEB)

    Woebken, D., L.C. Burow, L. Prufert-Bebout, B.M. Bebout, T. M. Hoehler, J. Pett-Ridge, A.M. Spormann; Singer, S W; McMurdie, P J; Weber, P K

    2011-10-01

    This project was to develop and optimize the following technologies: stable isotope probing + NanoSIMS analysis (nanoSIP), FISH, functional gene analysis, H2 production measurements, culturing, and metatranscriptomics for specific use in microbial mat systems. The larger goal was to further develop these methodologies in a way that facilitates their linkage, high fidelity 3-D correlation to location specific environmental change integrating geochemical characterization, such that ability to see and characterize microbial community responses to normal daily fluctuations and further ecological manipulations, in different locations of the mat communities is optimized.

  9. Filamentous anoxygenic phototrophic bacteria from cyanobacterial mats of Alla hot springs (Barguzin Valley, Russia).

    Science.gov (United States)

    Gaisin, Vasil A; Kalashnikov, Alexander M; Sukhacheva, Marina V; Namsaraev, Zorigto B; Barhutova, Darima D; Gorlenko, Vladimir M; Kuznetsov, Boris B

    2015-11-01

    Alkaline hydrotherms of the Baikal rift zone are unique systems to study the diversity of thermophilic bacteria. In this study, we present data on the phototrophic bacterial community of cyanobacterial mats from the alkaline Alla hot spring. Using a clonal analysis approach, this study evaluated the species diversity, the proportion of oxygenic and anoxygenic phototrophs and their distribution between various areas of the spring. Novel group-specific PCR primers were designed and applied to detect representatives of the Chloroflexus and Roseiflexus genera in mat samples. For the first time, the presence of Roseiflexus-like bacteria was detected in the Baikal rift zone.

  10. Effects of filamentous macroalgae mats on growth and survival of eelgrass, Zostera marina, seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Olesen, Birgit; Krause-Jensen, Dorte

    2012-01-01

    A laboratory experiment was conducted to assess the effect of filamentous algae mats on the performance of seedlings of the eelgrass, Zostera marina. The seedlings were covered by three levels (3, 6 and 9 cm) of natural (Chaetomorpha linum) and imitation algae mats and it was hypothesized...... that the effects of the natural algae on seedling growth may be more severe because of the metabolic demands of the algae. Results show that coverage by both C. linum and imitation algae significantly reduced seedling growth and increased allocation of resources to above ground tissues. No clear effects of algae...

  11. Different sensing mechanisms in single wire and mat carbon nanotubes chemical sensors

    CERN Document Server

    Neumann, P L; Dobrik, G; Kertész, K; Horváth, E; Lukács, I E; Biró, L P; Horváth, Z E

    2014-01-01

    Chemical sensing properties of single wire and mat form sensor structures fabricated from the same carbon nanotube (CNT) materials have been compared. Sensing properties of CNT sensors were evaluated upon electrical response in the presence of five vapours as acetone, acetic acid, ethanol, toluene, and water. Diverse behaviour of single wire CNT sensors was found, while the mat structures showed similar response for all the applied vapours. This indicates that the sensing mechanism of random CNT networks cannot be interpreted as a simple summation of the constituting individual CNT effects, but is associated to another robust phenomenon, localized presumably at CNT-CNT junctions, must be supposed.

  12. Interaction of gelatin with polyenes modulates antifungal activity and biocompatibility of electrospun fiber mats

    Directory of Open Access Journals (Sweden)

    Lakshminarayanan R

    2014-05-01

    Full Text Available Rajamani Lakshminarayanan,1,2 Radhakrishnan Sridhar,3,4 Xian Jun Loh,5 Muruganantham Nandhakumar,1 Veluchamy Amutha Barathi,1,6 Madhaiyan Kalaipriya,3,4 Jia Lin Kwan,1 Shou Ping Liu,1,2 Roger Wilmer Beuerman,1,2 Seeram Ramakrishna3,4,7 1Singapore Eye Research Institute, 2Signature Research Program in Neuroscience and Behavioral Disorders, Duke-NUS Graduate Medical School, 3Department of Mechanical Engineering, National University of Singapore, 4Center for Nanofibers and Nanotechnology, National University of Singapore, 5Institute of Materials Research and Engineering, A*STAR (Agency for Science, Technology and Research, 3 Research Link, Singapore, 6Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, 7NUS Nanoscience and Nanotechnology Initiative, Singapore Abstract: Topical application of antifungals does not have predictable or well-controlled release characteristics and requires reapplication to achieve therapeutic local concentration in a reasonable time period. In this article, the efficacy of five different US Food and Drug Administration-approved antifungal-loaded (amphotericin B, natamycin, terbinafine, fluconazole, and itraconazole electrospun gelatin fiber mats were compared. Morphological studies show that incorporation of polyenes resulted in a two-fold increase in fiber diameter and the mats inhibit the growth of yeasts and filamentous fungal pathogens. Terbinafine-loaded mats were effective against three filamentous fungal species. Among the two azole antifungals compared, the itraconazole-loaded mat was potent against Aspergillus strains. However, activity loss was observed for fluconazole-loaded mats against all of the test organisms. The polyene-loaded mats displayed rapid candidacidal activities as well. Biophysical and rheological measurements indicate strong interactions between polyene antifungals and gelatin matrix. As a result, the polyenes stabilized the triple helical

  13. On the use of a woven mat to control the crack path in composite sandwich structures

    DEFF Research Database (Denmark)

    Lundsgaard-Larsen, Christian; Berggreen, Christian; Carlsson, Leif A.

    2008-01-01

    laminate. It is investigated whether crack kinking can be prevented by a thin woven mat, placed in the laminate during manufacturing. The effectiveness of this "crack stopper" is tested for sandwich specimens loaded in a variety of mixed mode conditions. The test is conducted using a modified double...... is more dominating (mode II). It is possible to vary the loading and hereby the normal-tangential crack opening ratio (see Figure 1) to almost any desired mixed mode value. The test is conducted at different mode mixitiesand the kinking of the crack is explored for specimens with and without the woven mat...

  14. Engineering and Scientific Applications: Using MatLab(Registered Trademark) for Data Processing and Visualization

    Science.gov (United States)

    Sen, Syamal K.; Shaykhian, Gholam Ali

    2011-01-01

    MatLab(R) (MATrix LABoratory) is a numerical computation and simulation tool that is used by thousands Scientists and Engineers in many cou ntries. MatLab does purely numerical calculations, which can be used as a glorified calculator or interpreter programming language; its re al strength is in matrix manipulations. Computer algebra functionalities are achieved within the MatLab environment using "symbolic" toolbo x. This feature is similar to computer algebra programs, provided by Maple or Mathematica to calculate with mathematical equations using s ymbolic operations. MatLab in its interpreter programming language fo rm (command interface) is similar with well known programming languag es such as C/C++, support data structures and cell arrays to define c lasses in object oriented programming. As such, MatLab is equipped with most ofthe essential constructs of a higher programming language. M atLab is packaged with an editor and debugging functionality useful t o perform analysis of large MatLab programs and find errors. We belie ve there are many ways to approach real-world problems; prescribed methods to ensure foregoing solutions are incorporated in design and ana lysis of data processing and visualization can benefit engineers and scientist in gaining wider insight in actual implementation of their perspective experiments. This presentation will focus on data processing and visualizations aspects of engineering and scientific applicati ons. Specifically, it will discuss methods and techniques to perform intermediate-level data processing covering engineering and scientifi c problems. MatLab programming techniques including reading various data files formats to produce customized publication-quality graphics, importing engineering and/or scientific data, organizing data in tabu lar format, exporting data to be used by other software programs such as Microsoft Excel, data presentation and visualization will be discussed. The presentation will emphasize creating

  15. Excludentes de responsabilidade em matéria de responsabilidade civil ambiental

    OpenAIRE

    Oliveira, Vinícius Calério de

    2013-01-01

    A responsabilidade civil por danos causados ao meio ambiente possui seu principal amparo legislativo na Lei 6938/81 e no art. 225 da Constituição Federal. Segundo esses dispositivos, a responsabilidade por danos causados ao meio ambiente é objetiva, o que impede da comprovação de culpa do agente poluidor para que este seja obrigado a reparar e/ou indenizar o dano. As excludentes de responsabilidade que poderiam, pela natureza da matéria, serem alegadas em matéria de responsabilidad...

  16. Bagging system, soil stabilization mat, and tent frame for a lunar base

    Science.gov (United States)

    1990-01-01

    Georgia Tech's School of Textile and Fiber Engineering and School of Mechanical Engineering participated in four cooperative design efforts this year. Each of two interdisciplinary teams designed a system consisting of a lunar regolith bag and an apparatus for filling this bag. The third group designed a mat for stabilization of lunar soil during takeoff and landing, and a method for packaging and deploying this mat. Finally, the fourth group designed a sunlight diffusing tent to be used as a lunar worksite. Summaries of these projects are given.

  17. Diversity, distribution and hydrocarbon biodegradation capabilities of microbial communities in oil-contaminated cyanobacterial mats from a constructed wetland.

    Directory of Open Access Journals (Sweden)

    Raeid M M Abed

    Full Text Available Various types of cyanobacterial mats were predominant in a wetland, constructed for the remediation of oil-polluted residual waters from an oil field in the desert of the south-eastern Arabian Peninsula, although such mats were rarely found in other wetland systems. There is scarce information on the bacterial diversity, spatial distribution and oil-biodegradation capabilities of freshwater wetland oil-polluted mats. Microbial community analysis by Automated Ribosomal Spacer Analysis (ARISA showed that the different mats hosted distinct microbial communities. Average numbers of operational taxonomic units (OTUsARISA were relatively lower in the mats with higher oil levels and the number of shared OTUsARISA between the mats was 90% of the sequences affiliated to Proteobacteria (41% of total sequences, Cyanobacteria (31%, Bacteriodetes (11.5%, Planctomycetes (7% and Chloroflexi (3%. Known autotrophic (e.g. Rivularia and heterotrophic (e.g. Azospira nitrogen-fixing bacteria as well as purple sulfur and non-sulfur bacteria were frequently encountered in all mats. On the other hand, sequences of known sulfate-reducing bacteria (SRBs were rarely found, indicating that SRBs in the wetland mats probably belong to yet-undescribed novel species. The wetland mats were able to degrade 53-100% of C12-C30 alkanes after 6 weeks of incubation under aerobic conditions. We conclude that oil and ammonia concentrations are the major key players in determining the spatial distribution of the wetland mats' microbial communities and that these mats contribute directly to the removal of hydrocarbons from oil field wastewaters.

  18. CTX-M extended-spectrum β-lactamase-producing Klebsiella spp, Salmonella spp, Shigella spp and Escherichia coli isolates in Iranian hospitals.

    Science.gov (United States)

    Bialvaei, Abed Zahedi; Kafil, Hossein Samadi; Asgharzadeh, Mohammad; Aghazadeh, Mohammad; Yousefi, Mehdi

    2016-01-01

    This study was conducted in Iran in order to assess the distribution of CTX-M type ESBLs producing Enterobacteriaceae. From January 2012 to December 2013, totally 198 E. coli, 139 Klebsiella spp, 54 Salmonella spp and 52 Shigella spp from seven hospitals of six provinces in Iran were screened for resistance to extended-spectrum cephalosporins. After identification and susceptibility testing, isolates presenting multiple-drug resistance (MDR) were evaluated for ESBL production by the disk combination method and by Etest using (cefotaxime and cefotaxime plus clavulanic acid). All isolates were also screened for blaCTX-M using conventional PCR. A total of 42.92%, 33.81%, 14.81% and 7.69% of the E. coli, Klebsiella spp, Salmonella spp and Shigella spp isolates were MDR, respectively. The presence of CTX-M enzyme among ESBL-producing isolates was 85.18%, 77.7%, 50%, and 66.7%, in E. coli, Klebsiella spp, Salmonella spp and Shigella spp respectively. The overall presence of CTX-M genes in Enterobacteriaceae was 15.4% and among the resistant isolates was 47.6%. This study indicated that resistance to β-lactams mediated by CTX-M enzymes in Iran had similar pattern as in other parts of the world. In order to control the spread of resistance, comprehensive studies and programs are needed.

  19. Response to "Comment on `Performance of a spin-based insulated gate field effect transistor' [Appl. Phys. Lett. 88, 162503 (2006), cond-mat/0603260]" [cond-mat/0604532

    OpenAIRE

    Flatté, Michael E.; Hall, Kimberley C.

    2006-01-01

    A recent e-print (cond-mat/0604532) presented a proposed Comment to Applied Physics Letters on our publication Appl. Phys. Lett. 88, 162503 (2006), cond-mat/0603260. Here is our Response. As the proposed Comment has now been rejected by Applied Physics Letters, neither the Comment nor the Response will be published in Applied Physics Letters in this form.

  20. Characterization and Modification of Electrospun Fiber Mats for Use in Composite Proton Exchange Membranes

    Science.gov (United States)

    Mannarino, Matthew Marchand

    Electrostatic fiber formation, or electrospinning, offers a particularly simple and robust method to create polymeric nanofibers of various sizes and morphologies. In electrospinning, a viscoelastic fluid is charged so that a liquid jet is ejected from the surface of the fluid (typically in the form of a drop supplied by a needle or spinneret) and collected on a grounded plate, creating a nonwoven fiber mat. Modification of the diameter of the fibers as well as the porosity, specific surface area, and mechanical properties of the mat allows one to tailor electrospun mats for specific applications. Despite the widespread and rapidly growing use of electrospinning in the fabrication of novel nanomaterials, there are no simple, universal methods of predicting, a priori, the properties of electrospun fibers from knowledge of the polymer solution properties and electrospinning operating conditions alone. Changing a single fluid or processing parameter can affect the jet and fiber formation through several mechanisms. For example, using a different solvent can change several properties of the electrospinning fluid, such as the dielectric constant, conductivity, surface tension, and solute-solvent interaction. The work in this thesis seeks to develop a simple relation for predicting terminal jet diameter during electrospinning, which accounts for solution viscoelasticity as well as solution conductivity and operating parameters that can be easily measured and controlled. The mechanical and tribological properties of electrospun fiber mats are of paramount importance to their utility as components in a variety of applications. Although some mechanical properties of these mats have been investigated previously, reports of their tribological properties are essentially nonexistent. In this thesis, electrospun nanofiber mats of poly(trimethyl hexamethylene terephthalamide) (PA 6(3)T) and poly(hexamethylene adipamide) (PA 6,6) are characterized mechanically and tribologically

  1. Easy storage strategies for Sporothrix spp. strains.

    Science.gov (United States)

    Brilhante, Raimunda Sâmia Nogueira; Silva, Natalya Fechine; Lima, Rita Amanda Chaves de; Caetano, Érica Pacheco; Alencar, Lucas Pereira de; Castelo-Branco, Débora de Souza Collares Maia; Moreira, José Luciano Bezerra; Bandeira, Silviane Praciano; Camargo, Zoilo Pires de; Rodrigues, Anderson Messias; Bandeira, Tereza de Jesus Pinheiro Gomes; Monteiro, André Jalles; Cordeiro, Rossana de Aguiar; Sidrim, José Júlio Costa; Rocha, Marcos Fábio Gadelha

    2015-04-01

    The present study evaluated the maintenance of Sporothrix spp. (6 Sporothrix brasiliensis; 6 S. schenckii; 5 S. mexicana, and 3 S. globosa) in saline at 4°C, and in 10% glycerol plus either 10% lactose or 10% sucrose, at -20°C and -80°C. Viability was assessed after 3, 6, and 9 months of storage, through the recovery of strains on potato dextrose agar and analysis of macro- and micromorphological features. Conidium quantification was performed before and after storage, at 3, 6 and 9 months. 100% viability was observed, regardless of storage conditions or time period. Storage at 4°C and at -20°C did not alter the number of conidia, but lower conidium counts were observed at -80°C. This study shows that the combination of glycerol with lactose or sucrose is effective to maintain Sporothrix spp. at freezing temperatures.

  2. Chronic otomycosis due to Malassezia Spp

    Directory of Open Access Journals (Sweden)

    R Latha

    2010-01-01

    Full Text Available We report the case of a 31-year-old male presenting with complaints of mild pain in the right ear for three months and hypoacusis for 10 days. On otoscopic examination, a thin, papery, white material was extracted from his ear and sent for fungal identification. This material revealed presence of Malassezia spp - with characteristic "spaghetti and meat ball appearance". The patient was treated with 2% acetic acid, hydrocortisone and Clotrimazole powder for one week and he resolved completely.

  3. Relationship between Fusarium spp. diversity and mycotoxin contents of mature grains in southern Belgium.

    Science.gov (United States)

    Hellin, Pierre; Dedeurwaerder, Géraldine; Duvivier, Maxime; Scauflaire, Jonathan; Huybrechts, Bart; Callebaut, Alfons; Munaut, Françoise; Legrève, Anne

    2016-07-01

    Over a 4-year period (2010-13), a survey aiming at determining the occurrence of Fusarium spp. and their relations to mycotoxins in mature grains took place in southern Belgium. The most prevalent species were F. graminearum, F. avenaceum, F. poae and F. culmorum, with large variations between years and locations. An even proportion of mating type found for F. avenaceum, F. culmorum, F. cerealis and F. tricinctum is usually a sign of ongoing sexual recombination. In contrast, an unbalanced proportion of mating type was found for F. poae and no MAT1-2 allele was present in the F. langsethiae population. Genetic chemotyping indicates a majority of deoxynivalenol (DON)-producing strains in F. culmorum (78%, all 3-ADON producers) and F. graminearum (95%, mostly 15-ADON producers), while all F. cerealis strains belong to the nivalenol (NIV) chemotype. Between 2011 and 2013, DON, NIV, enniatins (ENNs) and moniliformin (MON) were found in each field in various concentrations. By comparison, beauvericin (BEA) was scarcely detected and T-2 toxin, zearalenone and α- and β-zearalenols were never detected. Principal component analysis revealed correlations of DON with F. graminearum, ENNs and MON with F. avenaceum and NIV with F. culmorum, F. cerealis and F. poae. BEA was associated with the presence of F. tricinctum and, to a lesser extent, with the presence of F. poae. The use of genetic chemotype data revealed that DON concentrations were mostly influenced by DON-producing strains of F. graminearum and F. culmorum, whereas the concentrations of NIV were influenced by the number of NIV-producing strains of both species added to the number of F. cerealis and F. poae strains. This study emphasises the need to pay attention to less-studied Fusarium spp. for future Fusarium head blight management strategies, as they commonly co-occur in the field and are associated with a broad spectrum of mycotoxins.

  4. Seroprevalencia de Leptospira spp en caninos y humanos de tres barrios de Tunja, Colombia

    Directory of Open Access Journals (Sweden)

    Soledad Bermúdez C.

    2010-12-01

    Full Text Available Objetivo. Establecer la seroprevalencia de Leptospira spp., en la población canina y humana de barrios marginados en la ciudad de Tunja. Materiales y métodos. Se muestrearon 61 sueros caninos en los barrios marginales de la ciudad, parlelamente se muestrearon y encuestaron 46 humanos propietarios de las mascotas. Para el procesamiento de las muestras se empleó la técnica de microaglutinación-lisis (MAT para seis serotipos de Leptospira spp. Resultados. Se encontró una seropositividad del 67.2% en la población de caninos muestreada, la seroprevalencia por serovares arrojada fue del 14.8% para L. icterohemorrágica; 8.2% para L. pomona; 9.85% para L. hardjo; 18% para L. canicola y 6.6% para L. automnalis y 9.8% para L. sejroë. Para los humanos la prevalencia fue del 21.7%, por serovares se encontró que L. automnalis tiene 4.35%; L. hardjo 2.17%, L. sejroë tiene 6.52%, L. icterohaemorragiae 6.52% y L. canicola 2.17%. Conclusiones. Estos resultados demostraron una gran problemática de alto impacto ya que en contraste con prevalencias de otros municipios de Colombia, mostró una elevada positividad en esta zona y dejan una gran preocupación por una rápida diseminación que podria suceder debido al contacto entre los diferentes vectores como lo roedores y caninos.

  5. Magnetoacoustic tomography with magnetic induction (MAT-MI) for imaging electrical conductivity of biological tissue: a tutorial review

    Science.gov (United States)

    Li, Xu; Yu, Kai; He, Bin

    2016-09-01

    Magnetoacoustic tomography with magnetic induction (MAT-MI) is a noninvasive imaging method developed to map electrical conductivity of biological tissue with millimeter level spatial resolution. In MAT-MI, a time-varying magnetic stimulation is applied to induce eddy current inside the conductive tissue sample. In the presence of a static magnetic field, the Lorentz force acting on the induced eddy current drives mechanical vibrations producing detectable ultrasound signals. These ultrasound signals can then be acquired to reconstruct a map related to the sample’s electrical conductivity contrast. This work reviews fundamental ideas of MAT-MI and major techniques developed in recent years. First, the physical mechanisms underlying MAT-MI imaging are described, including the magnetic induction and Lorentz force induced acoustic wave propagation. Second, experimental setups and various imaging strategies for MAT-MI are reviewed and compared, together with the corresponding experimental results. In addition, as a recently developed reverse mode of MAT-MI, magneto-acousto-electrical tomography with magnetic induction is briefly reviewed in terms of its theory and experimental studies. Finally, we give our opinions on existing challenges and future directions for MAT-MI research. With all the reported and future technical advancement, MAT-MI has the potential to become an important noninvasive modality for electrical conductivity imaging of biological tissue.

  6. Conversion of an electrospun nanofibrous cellulose acetate mat from a super-hydrophilic to super-hydrophobic surface

    Science.gov (United States)

    Ding, Bin; Li, Chunrong; Hotta, Yoshio; Kim, Jinho; Kuwaki, Oriha; Shiratori, Seimei

    2006-09-01

    We report a new approach to convert an electrospun nanofibrous cellulose acetate mat surface from super-hydrophilic to super-hydrophobic. Super-hydrophilic cellulose acetate nanofibrous mats can be obtained by electrospinning hydrophilic cellulose acetate. The surface properties of the fibrous mats were modified from super-hydrophilic to super-hydrophobic with a simple sol-gel coating of decyltrimethoxysilane (DTMS) and tetraethyl orthosilicate (TEOS). The resultant samples were characterized by field emission scanning electron microscopy (FE-SEM), x-ray photoelectron spectroscopy (XPS), water contact angle, Brunauer-Emmett-Teller (BET) surface area, atomic force microscopy (AFM), and UV-visible measurements. The results of FE-SEM and XPS showed that the sol-gel (I) films were formed on the rough fibrous mats only after immersion in sol-gel. After the sol-gel (I) coating, the cellulose acetate fibrous mats formed in both 8 and 10 wt% cellulose acetate solutions showed the super-hydrophobic surface property. Additionally, the average sol-gel film thickness coated on 10 wt% cellulose acetate fibrous mats was calculated to be 80 nm. The super-hydrophobicity of fibrous mats was attributed to the combined effects of the high surface roughness of the electrospun nanofibrous mats and the hydrophobic DTMS sol-gel coating. Additionally, hydrophobic sol-gel nanofilms were found to be transparent according to UV-visible measurements.

  7. Temporal and spatial variability of nifH expression in three filamentous Cyanobacteria in coastal microbial mats

    NARCIS (Netherlands)

    Severin, I.; Stal, L.J.

    2010-01-01

    Cyanobacteria are often the most conspicuous structural part of microbial mats. They are also the only oxygenic phototrophs capable of N2 fixation (diazotrophy). This represents an important advantage for persistence in the often N-depleted marine intertidal microbial mats. In this study the daily p

  8. Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats

    NARCIS (Netherlands)

    Severin, I.; Confurius-Guns, V.; Stal, L.J.

    2012-01-01

    Microbial mats are often found in intertidal areas experiencing a large range of salinities. This study investigated the effect of changing salinities on nitrogenase activity and on the composition of the active diazotrophic community (nifH transcript libraries) of three types of microbial mats situ

  9. Production and consumption of hydrogen in hot spring microbial mats dominated by a filamentous anoxygenic photosynthetic bacterium.

    Science.gov (United States)

    Otaki, Hiroyo; Everroad, R Craig; Matsuura, Katsumi; Haruta, Shin

    2012-01-01

    Microbial mats containing the filamentous anoxygenic photosynthetic bacterium Chloroflexus aggregans develop at Nakabusa hot spring in Japan. Under anaerobic conditions in these mats, interspecies interaction between sulfate-reducing bacteria as sulfide producers and C. aggregans as a sulfide consumer has been proposed to constitute a sulfur cycle; however, the electron donor utilized for microbial sulfide production at Nakabusa remains to be identified. In order to determine this electron donor and its source, ex situ experimental incubation of mats was explored. In the presence of molybdate, which inhibits biological sulfate reduction, hydrogen gas was released from mat samples, indicating that this hydrogen is normally consumed as an electron donor by sulfate-reducing bacteria. Hydrogen production decreased under illumination, indicating that C. aggregans also functions as a hydrogen consumer. Small amounts of hydrogen may have also been consumed for sulfur reduction. Clone library analysis of 16S rRNA genes amplified from the mats indicated the existence of several species of hydrogen-producing fermentative bacteria. Among them, the most dominant fermenter, Fervidobacterium sp., was successfully isolated. This isolate produced hydrogen through the fermentation of organic carbon. Dispersion of microbial cells in the mats resulted in hydrogen production without the addition of molybdate, suggesting that simultaneous production and consumption of hydrogen in the mats requires dense packing of cells. We propose a cyclic electron flow within the microbial mats, i.e., electron flow occurs through three elements: S (elemental sulfur, sulfide, sulfate), C (carbon dioxide, organic carbon) and H (di-hydrogen, protons).

  10. Multifunctional ZnO/Nylon 6 nanofiber mats by an electrospinning– electrospraying hybrid process for use in protective applications

    Science.gov (United States)

    ZnO/Nylon 6 nanofiber mats were prepared by an electrospinning–electrospraying hybrid process in which ZnO nanoparticles were dispersed on the surface of Nylon 6 nanofibers without becoming completely embedded. The prepared ZnO/Nylon 6 nanofiber mats were evaluated for their abilities to kill bacter...

  11. Electrospun DOXY-h loaded-poly(acrylic acid) nanofiber mats: in vitro drug release and antibacterial properties investigation.

    Science.gov (United States)

    Khampieng, Thitikan; Wnek, Gary E; Supaphol, Pitt

    2014-01-01

    Electrospun DOXY-h loaded-poly(acrylic acid) (PAA) nanofiber mats (PAA/DOXY-h nanofiber mats) were prepared by the electrospinning technique and post-spinning sorption method at various doses: PAA/DOXY-h125, PAA/DOXY-h250, PAA/DOXY-h500, and PAA/DOXY-h1000. The morphology, drug content, release characteristics, and antibacterial activities of the PAA/DOXY-h nanofiber mats were investigated with scanning electron microscopy, UV-vis spectrophotometry, and disc diffusion methodology. The PAA/DOXY-h nanofiber mats had a diameter range of 285-340 nm, and a smooth surface without beads. Adsorption isotherms of DOXY-h could be described well with the Freundlich model. The amounts of DOXY-h, after the post-spinning sorption process, in the PAA/DOXY-h nanofiber mats ranged between 27.57 and 101.71 mg/g. All of the PAA/DOXY-h nanofiber mats exhibited an initial burst release characteristic with cumulative releasing percentages between 37.14 and 45.97%, which followed the Fickian diffusion mechanism. Based on the antibacterial investigation, the tested gram-positive bacteria, Staphylococcus aureus and Streptococcus agalactiae, seemed to be more sensitive to PAA/DOXY-h nanofiber mats than the tested gram-negative bacteria, Pseudomonas aeruginosa. These PAA/DOXY-h nanofiber mats could be used as an antibacterial wound dressing.

  12. Enrichment of Acinetobacter spp. from food samples.

    Science.gov (United States)

    Carvalheira, Ana; Ferreira, Vânia; Silva, Joana; Teixeira, Paula

    2016-05-01

    Relatively little is known about the role of foods in the chain of transmission of acinetobacters and the occurrence of different Acinetobacter spp. in foods. Currently, there is no standard procedure to recover acinetobacters from food in order to gain insight into the food-related ecology and epidemiology of acinetobacters. This study aimed to assess whether enrichment in Dijkshoorn enrichment medium followed by plating in CHROMagar™ Acinetobacter medium is a useful method for the isolation of Acinetobacter spp. from foods. Recovery of six Acinetobacter species from food spiked with these organisms was compared for two selective enrichment media (Baumann's enrichment and Dijkshoorn's enrichment). Significantly (p Acinetobacter was applied to detect Acinetobacter spp. in different foods. Fourteen different presumptive acinetobacters were recovered and assumed to represent nine different strains on the basis of REP-PCR typing. Eight of these strains were identified by rpoB gene analysis as belonging to the species Acinetobacter johnsonii, Acinetobacter calcoaceticus, Acinetobacter guillouiae and Acinetobacter gandensis. It was not possible to identify the species level of one strain which may suggests that it represents a distinct species.

  13. Micropropagation of Rubus and Ribes spp.

    Science.gov (United States)

    Dziedzic, Ewa; Jagła, Joanna

    2013-01-01

    Micropropagation is the most appropriate method for large-scale production of Rubus and Ribes spp. The proliferation rate of Rubus spp. differs in shoot tips and nodal segments. The culture media used for raspberry and blackberry propagation are MS-based supplemented with different combination and ratio of plant growth regulators, depending on the stage of culture. The initiation medium containing 0.4 mg L(-1) BA and 0.1 mg L(-1) IBA is used to stabilize shoot cultures. In multiplication media, concentration of cytokinin is doubled. In vitro rooting of shoots is achieved on media supplemented with 1.0 mg L(-1) IBA. Ribes spp. cultures are initiated from shoot tips, meristem, or dormant buds on MS medium supplemented with 2.0 mg L(-1) BA, 0.5 mg L(-1) IBA, and 0.1 mg L(-1) GA(3.) After stabilization of shoot cultures in 3-4-week time, shoot multiplication is carried out on MS medium containing 1.0 mg L(-1) BA and 0.1 mg L(-1) IBA. Shoots 2 cm long are cultured to rooting on a medium amended with 2.0 mg L(-1) IBA and 5.0 mg L(-1) IAA. Rooted plantlets are transferred to universal peat substrate and acclimatized in the greenhouse.

  14. Preparation and photochromic properties of ultra-fine H3PW11MoO40/PVA fibre mats

    Science.gov (United States)

    Yang, Guo-Cheng; Gong, Jian; Pan, Yan; Cui, Xiu-Jun; Shao, Chang-Lu; Guo, Yi-Hang; Wen, Shang-Bin; Qu, Lun-Yu

    2004-07-01

    Novel photochromic materials, H3PW11MoO40/Poly (vinyl alcohol) (PVA) ultra-fine fibre mats containing different weight percentages of H3PW11MoO40, have been prepared from different H3PW11MoO40/PVA solutions by an electrospinning technique. IR spectroscopy, wide-angle x-ray diffraction, and scanning electron microscope spectroscopy are used to characterize the fibre mats. Results of viscosity and conductivity measurements of the solutions indicate that lower viscosity and higher conductivity favour the formation of thin fibres without beads. When irradiated with ultraviolet light (313.2 nm), the colour of the fibre mats changes from white to blue, and the mats show reversible photochromism. IR and ESR spectra of the irradiated fibre mats indicate a conceivable photochromic mechanism, i.e. MoVI is reduced under ultraviolet irradiation. Meanwhile, PVA is oxidized to unsaturated ketone or aldehyde.

  15. Modulation of a fluorescence switch of nanofiber mats containing photochromic spironaphthoxazine and D-{pi}-A charge transfer dye

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Eun-Mi [BK21 FTIT Department of Advanced Organic Materials and Textile System Engineering, Chungnam National University, Daejeon 305-764 (Korea, Republic of); Gwon, Seon-Young [Department of Advanced Organic Materials Science and Engineering, Kyungpook National University, Daegu 702-701 (Korea, Republic of); Son, Young-A. [BK21 FTIT Department of Advanced Organic Materials and Textile System Engineering, Chungnam National University, Daejeon 305-764 (Korea, Republic of); Kim, Sung-Hoon, E-mail: shokim@knu.ac.kr [Department of Advanced Organic Materials Science and Engineering, Kyungpook National University, Daegu 702-701 (Korea, Republic of); School of Chemistry Science and Technology, Zhanjiang Normal University, Zhanjiang 524048 (China)

    2012-06-15

    Photoswitchable poly(methyl methacrylate) (PMMA) nanofiber mats containing spironaphthoxazine (SPO)/electron donor-{pi}-acceptor (D-{pi}-A) type fluorescent dye (TCF) were prepared by electrospinning. The photoregulated fluorescence switching behaviors of SPO/TCF blended solution and PMMA nanofiber mats containing SPO/TCF were also studied. Not only SPO/TCF blended solution but also PMMA nanofiber mats containing SPO/TCF showed reversible modulation of fluorescence intensity using alternating irradiation with UV and visible light. Highlights: Black-Right-Pointing-Triangle We have designed PMMA nanofiber mats containing a photochromic SPO and fluorescent TCF. Black-Right-Pointing-Triangle Photoswitchable PMMA nanofiber mats containing SPO/TCF were prepared by electrospinning. Black-Right-Pointing-Triangle Reversible modulation of fluorescence intensity was achieved by irradiation with UV/vis.

  16. Nitrogen fixation in a non-heterocystous cyanobacterial mat from a mountain river

    Science.gov (United States)

    Berrendero, Esther; Valiente, Eduardo Fernández; Perona, Elvira; Gómez, Claudia L.; Loza, Virginia; Muñoz-Martín, M. Ángeles; Mateo, Pilar

    2016-08-01

    In situ nitrogen fixation was investigated in a cyanobacterial mat growing on the bed of rocks of the Muga River, Spain. The filamentous non-heterocystous cyanobacterium Schizothrix dominated the mat, showing nitrogenase activity in the light at similar rates to those found in nearby heterocystous Rivularia colonies. N2 fixation in the light was significantly increased by an inhibitor of PSII and oxygen evolution, DCMU (3-[3,4-dichlorophenyl]-1,1-dimethylurea), and anaerobic conditions. However, no nitrogenase activity was found in the dark. Addition of fructose as a respiratory substrate induced nitrogenase activity in samples incubated under aerobic conditions in the dark but not in anaerobic conditions. Microelectrode oxygen profiles showed internal microaerobic microzones where nitrogen fixation might concentrate. Analyses of the 16S rRNA gene revealed only the presence of sequences belonging to filamentous non-heterocystous cyanobacteria. nifH gene diversity showed that the major phylotypes also belonged to this group. One of the three strains isolated from the Schizothrix mat was capable of fixing N2 and growing in the absence of combined N. This was consistent with the nifH gene analysis. These results suggest a relevant contribution of non-heterocystous cyanobacteria to nitrogen fixation in these mats.

  17. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential

    DEFF Research Database (Denmark)

    Klatt, C. G.; Wood, J. M.; Rusch, D. B.

    2011-01-01

    Phototrophic microbial mat communities from 60¿°C and 65¿°C regions in the effluent channels of Mushroom and Octopus Springs (Yellowstone National Park, WY, USA) were investigated by shotgun metagenomic sequencing. Analyses of assembled metagenomic sequences resolved six dominant chlorophototrophic...

  18. Surface-Initiated Atom Transfer Radical Polymerization from Electrospun Mats: An Alternative to Nafion

    DEFF Research Database (Denmark)

    Javakhishvili, Irakli; Dimitrov, Ivaylo; Tynelius, Oskar

    2016-01-01

    Proton exchange membranes for fuel cell applications are synthesized by surface-initiated(SI) atom transfer radical polymerization (ATRP). Poly(vinylidene fluoride-co-chlorotrifluoroethylene)is electrospun into 50 μm thick mat, which is then employed as multifunctionalinitiator for copper...

  19. The Use of Maltodextrin Matrices to Control the Release of Minerals from Fortified Maté

    Directory of Open Access Journals (Sweden)

    Miguel E. Schmalko

    2012-04-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE The aim of this research was to study the sensorial acceptance of a fortified food containing different minerals (calcium, magnesium and iron and to determine the actual quantities present (bioaccessibility when extracted in maté. A sensorial analysis was performed to compare sensorial quality of fortified and non-fortified maté. Although panelists identified differences between the fortified and non-fortified maté, only 3% of them commented on an unpleasant flavor. Sequential extraction assays were performed simulating maté consumption under laboratory conditions. Profile concentration diminished sharply after the second extraction. Magnesium was found to be completely extracted in the first 500 mL. Calcium and Iron were extracted in a very low percentage (29% and 25%, respectively. The outlet rate of the minerals was fitted to two models, and a good fitness (p < 0:001 in all cases was obtained.

  20. Matérn's hard core models of types I and II with arbitrary compact grains

    DEFF Research Database (Denmark)

    Kiderlen, Markus; Hörig, Mario

    Matérn's classical hard core models can be interpreted as models obtained from a stationary marked Poisson process by dependent thinning. The marks are balls of fixed radius, and a point is retained when its associated ball does not hit any other balls (type I) or when its random birth time...

  1. A Cyanine Dye Encapsulated Porous Fibrous Mat for Naked-Eye Ammonia Sensing.

    Science.gov (United States)

    Ji, Chendong; Ma, Lijing; Yin, Meizhen; Yang, Wantai; Pan, Kai

    2016-08-19

    Electrospun ultrathin fiber-based sensors are desirable because of their practicality and sensitivity. Ammonia-detection systems are in high demand in different areas, including the industrial and agricultural fields. However, current technologies rely on large and complex instruments that restrict their actual utilization. Herein, we report a flexible naked-eye ammonia sensor, the polylactic acid-cyanine (PLA-Cy) fibrous mat, which was fabricated by blending a carboxyl-functionalized cyanine dye (D1) into electospun PLA porous fibers. The sensing mat was shown to undergo a naked-eye-detectable color change from white to blue upon exposure to ammonia vapor. The mat showed high selectivity to ammonia gas with a detection limit of 3.3 ppm. Aggregated D1 was first encapsulated by PLA and was then ionized by NH3 . These mechanisms were examined by photophysical studies and scanning electron microscopy. The aggregation-deaggregation process of D1 in the PLA-Cy fibrous mat led to the color change. This work provides a facile method for the naked-eye detection of ammonia and a novel strategy for the use of organic dyes in ammonia sensing.

  2. Sulfate-reducing bacteria and their activities in cyanobacterial mats of Solar Lake (Sinai, Egypt)

    DEFF Research Database (Denmark)

    Teske, A.; Ramsing, NB; Habicht, K.

    1998-01-01

    The sulfate-reducing bacteria within the surface layer of the hypersaline cyanobacterial mat of Solar Lake (Sinai, Egypt) were investigated with combined microbiological, molecular, and biogeochemical approaches. The diurnally oxic surface layer contained between 10(6) and 10(7) cultivable sulfat...

  3. Mat-Rix-Toe: Improving Writing through a Game-Based Project in Linear Algebra

    Science.gov (United States)

    Graham-Squire, Adam; Farnell, Elin; Stockton, Julianna Connelly

    2014-01-01

    The Mat-Rix-Toe project utilizes a matrix-based game to deepen students' understanding of linear algebra concepts and strengthen students' ability to express themselves mathematically. The project was administered in three classes using slightly different approaches, each of which included some editing component to encourage the…

  4. Super-Hydrophobic High Throughput Electrospun Cellulose Acetate (CA) Nanofibrous Mats as Oil Selective Sorbents

    Science.gov (United States)

    Han, Chao

    The threat of oil pollution increases with the expansion of oil exploration and production activities, as well as the industrial growth around the world. Use of sorbents is a common method to deal with the oil spills. In this work, an advanced sorbent technology is described. A series of non-woven Cellulose Acetate (CA) nanofibrous mats with a 3D fibrous structure were synthesized by a novel high-throughput electrospinning technique. The precursor was solutions of CA/ acetic acid-acetone in various concentrations. Among them, 15.0% CA exhibits a superhydrophobic surface property, with a water contact angle of 128.95°. Its oil sorption capacity is many times higher the oil sorption capacity of the best commercial sorbent available in the market. Also, it showed good buoyancy properties on the water both as dry-mat and oil-saturated mat. In addition, it is biodegradable, easily available, easily manufactured, so the CA nanofibrous mat is an excellent candidate as oil sorbent for oil spill in water treatment.

  5. Three-dimensional electrospun alginate nanofiber mats via tailored charge repulsions.

    Science.gov (United States)

    Bonino, Christopher A; Efimenko, Kirill; Jeong, Sung In; Krebs, Melissa D; Alsberg, Eben; Khan, Saad A

    2012-06-25

    The formation of 3D electrospun mat structures from alginate-polyethylene oxide (PEO) solution blends is reported. These unique architectures expand the capabilities of traditional electrospun mats for applications such as regenerative medicine, where a scaffold can help to promote tissue growth in three dimensions. The mat structures extend off the surface of the flat collector plate without the need of any modifications in the electrospinning apparatus, are self-supported when the electric field is removed, and are composed of bundles of nanofibers. A mechanism for the unique formations is proposed, based on the fiber-fiber repulsions from surface charges on the negatively charged alginate. Furthermore, the role of the electric field in the distribution of alginate within the nanofibers is discussed. X-ray photoelectron spectroscopy is used to analyze the surface composition of the electrospun nanofiber mats and the data is related to cast films made in the absence of the electric field. Further techniques to tailor the 3D architecture and nanofiber morphology by changing the surface tension and relative humidity are also discussed.

  6. Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities

    Science.gov (United States)

    Paerl, H. W.; Bebout, B. M.; Joye, S. B.; Des Marais, D. J.

    1993-01-01

    Intertidal marine microbial mats exhibited biologically mediated uptake of low molecular weight dissolved organic matter (DOM), including D-glucose, acetate, and an L-amino acid mixture at trace concentrations. Uptake of all compounds occurred in darkness, but was frequently enhanced under natural illumination. The photosystem 2 inhibitor, 3-(3,4-dichlorophenyl)-1,1-dimethyl urea (DCMU) generally failed to inhibit light-stimulated DOM uptake. Occasionally, light plus DCMU-amended treatments led to uptake rates higher than light-incubated samples, possibly due to phototrophic bacteria present in subsurface anoxic layers. Uptake was similar with either 3H- or 14C-labeled substrates, indicating that recycling of labeled CO2 via photosynthetic fixation was not interfering with measurements of light-stimulated DOM uptake. Microautoradiographs showed a variety of pigmented and nonpigmented bacteria and, to a lesser extent, cyanobacteria and eucaryotic microalgae involved in light-mediated DOM uptake. Light-stimulated DOM uptake was often observed in bacteria associated with sheaths and mucilage surrounding filamentous cyanobacteria, revealing a close association of organisms taking up DOM with photoautotrophic members of the mat community. The capacity for dark- and light-mediated heterotrophy, coupled to efficient retention of fixed carbon in the mat community, may help optimize net production and accretion of mats, even in oligotrophic waters.

  7. In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle

    DEFF Research Database (Denmark)

    Revsbech, Niels Peter; Trampe, Erik Christian Løvbjerg; Lichtenberg, Mads;

    2016-01-01

    in a hot spring microbial mat, where various ecotypes of unicellular cyanobacteria (Synechococcus sp.) are the only oxygenic phototrophs. In the evening, H2 accumulated rapidly after the onset of darkness, reaching peak values of up to 30 mol H2 liter1 at about 1-mm depth below the mat surface, slowly...... decreasing to about 11 mol H2 liter1 just before sunrise. Another pulse of H2 production, reaching a peak concentration of 46 mol H2 liter1, was found in the early morning under dim light conditions too low to induce accumulation of O2 in the mat. The light stimulation of H2 accumulation indicated...... that nitrogenase activity was an important source of H2 during the morning. This is in accordance with earlier findings of a distinct early morning peak in N2 fixation and expression of Synechococcus nitrogenase genes in mat samples from the same location. Fermentation might have contributed to the formation of H2...

  8. Using MatContM in the study of a nonlinear map in economics

    NARCIS (Netherlands)

    Neirynck, Niels; Al-Hdaibat, Bashir; Govaerts, Willy; Kouznetsov, Yuri A.; Meijer, Hil G.E.

    2016-01-01

    MatContM is a MATLAB interactive toolbox for the numerical study of iterated smooth maps, their Lyapunov exponents, fixed points, and periodic, homoclinic and heteroclinic orbits as well as their stable and unstable invariant manifolds. The bifurcation analysis is based on continuation methods, trac

  9. Using MatContM in the study of a nonlinear map in economics

    NARCIS (Netherlands)

    Neirynck, N.; Al Hdaibat, Bashir; Govaerts, W.; Kuznetsov, Yu.A.; Meijer, H.G.E.

    2016-01-01

    MatContM is a MATLAB interactive toolbox for the numerical study of iterated smooth maps, their Lyapunov exponents, fixed points, and periodic, homoclinic and heteroclitic orbits as well as their stable and unstable invariant manifolds. The bifurcation analysis is based on continuation methods, trac

  10. Organic matter degradation drives benthic cyanobacterial mat abundance on caribbean coral reefs

    NARCIS (Netherlands)

    Brocke, Hannah J.; Polerecky, Lubos; De Beer, Dirk; Weber, Miriam; Claudet, Joachim; Nugues, Maggy M.

    2015-01-01

    Benthic cyanobacterial mats (BCMs) are impacting coral reefs worldwide. However, the factors and mechanisms driving their proliferation are unclear. We conducted a multi-year survey around the Caribbean island of Curaçao, which revealed highest BCM abundance on sheltered reefs close to urbanised are

  11. Using the 4MAT Framework to Design a Problem-Based Learning Biostatistics Course

    Science.gov (United States)

    Nowacki, Amy S.

    2011-01-01

    The study presents and applies the 4MAT theoretical framework to educational planning to transform a biostatistics course into a problem-based learning experience. Using a four-question approach, described are specific activities/materials utilized at both the class and course levels. Two web-based instruments collected data regarding student…

  12. Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    DEFF Research Database (Denmark)

    Al-Najjar, A.A.; De Beer, D.; Jørgensen, B. B.

    2011-01-01

    Here we present, to the best of our knowledge, the first balanced light energy budget for a benthic microbial mat ecosystem, and show how the budget and the spatial distribution of the local photosynthetic efficiencies within the euphotic zone depend on the absorbed irradiance (J(abs)). Our appro...

  13. SULFIDE OXIDATION UNDER OXYGEN LIMITATION BY A THIOBACILLUS-THIOPARUS ISOLATED FROM A MARINE MICROBIAL MAT

    NARCIS (Netherlands)

    VANDENENDE, FP; VANGEMERDEN, H

    1993-01-01

    The colorless sulfur bacterium Thiobacillus thioparus T5, isolated from a marine microbial mat, was grown in continuous culture under conditions ranging from sulfide limitation to oxygen limitation. Under sulfide-limiting conditions, sulfide was virtually completely oxidized to sulfate. Under oxygen

  14. Welcome address / Mats Estonius, Toomas Hendrik Ilves, Eduardo Ibàñes, Uffe A. Baslev

    Index Scriptorium Estoniae

    2010-01-01

    Läänemere strateegia konverentsi avasõnad laususid Tallinna Ülikooli teadusprorektor Mats Estonius, Eesti Vabariigi president Toomas Hendrik Ilves ((vt. ka foto lk. 21), Hispaania Kuningriigi suursaadik Eestis Eduardo Ibáñes ja Taani Kuningriigi suursaadik Eestis Uffe A. Baslev

  15. Kes on Eesti teaduses tegijad? / Mats Estonius, Andres Metspalu, Rein Vaikmäe, Martin Zobel

    Index Scriptorium Estoniae

    2008-01-01

    Küsimusele vastavad Tallinna Ülikooli teadusprorektor Mats Estonius, Tartu Ülikooli biotehnoloogia professor Andres Metspalu, Tallinna Tehnikaülikooli teadusprorektor, teaduspoliitika komisjoni liige Rein Vaikmäe, Tartu Ülikooli taimeökoloogia professor, teaduskompetentsi nõukogu esimees Martin Zobel

  16. Nitrogen fixation in a non-heterocystous cyanobacterial mat from a mountain river

    Science.gov (United States)

    Berrendero, Esther; Valiente, Eduardo Fernández; Perona, Elvira; Gómez, Claudia L.; Loza, Virginia; Muñoz-Martín, M. Ángeles; Mateo, Pilar

    2016-01-01

    In situ nitrogen fixation was investigated in a cyanobacterial mat growing on the bed of rocks of the Muga River, Spain. The filamentous non-heterocystous cyanobacterium Schizothrix dominated the mat, showing nitrogenase activity in the light at similar rates to those found in nearby heterocystous Rivularia colonies. N2 fixation in the light was significantly increased by an inhibitor of PSII and oxygen evolution, DCMU (3-[3,4-dichlorophenyl]-1,1-dimethylurea), and anaerobic conditions. However, no nitrogenase activity was found in the dark. Addition of fructose as a respiratory substrate induced nitrogenase activity in samples incubated under aerobic conditions in the dark but not in anaerobic conditions. Microelectrode oxygen profiles showed internal microaerobic microzones where nitrogen fixation might concentrate. Analyses of the 16S rRNA gene revealed only the presence of sequences belonging to filamentous non-heterocystous cyanobacteria. nifH gene diversity showed that the major phylotypes also belonged to this group. One of the three strains isolated from the Schizothrix mat was capable of fixing N2 and growing in the absence of combined N. This was consistent with the nifH gene analysis. These results suggest a relevant contribution of non-heterocystous cyanobacteria to nitrogen fixation in these mats. PMID:27476439

  17. Resistência ao glyphosate em biótipos de buva (Conyza spp. das regiões oeste e sudoeste do Paraná Resistance to glyphosate in Conyza spp. biotypes in western and southwestern Parana, Brazil

    Directory of Open Access Journals (Sweden)

    M.M Trezzi

    2011-01-01

    Full Text Available A resistência ao glyphosate em biótipos de Conyza spp. em áreas de lavoura das regiões oeste e sudoeste do Paraná causa grandes dificuldades ao manejo e, consequentemente, problemas econômicos e ambientais. Este experimento objetivou determinar a existência de resistência ao herbicida glyphosate em biótipos de buva (Conyza spp. suspeitos, coletados em lavouras das regiões oeste e sudoeste do Paraná, comparando-os com biótipos suscetíveis. O delineamento experimental utilizado foi inteiramente casualizado, em esquema fatorial 12 x 8 x 3. Os fatores consistiram de 12 biótipos de buva, doses de glyphosate (0, 100, 180, 324, 583, 1.050, 1.888 e 3.345 g ha-1 e épocas de avaliação para a variável controle (7, 14 e 21 dias após a aplicação. Para as variáveis matéria verde e matéria seca, o esquema fatorial utilizado foi o 12 x 8. As variáveis avaliadas foram controle visual, matéria verde, matéria seca, C50, GR50 e fator de resistência. A dose de 3.345 g glyphosate ha-1 foi a que apresentou maior nível de controle dos biótipos, porém o controle dos biótipos suspeitos não foi efetivo, necessitando de doses mais altas. Todos os biótipos de buva suspeitos de resistência ao glyphosate tiveram essa característica confirmada. Entretanto, constatou-se grande amplitude de fatores de resistência, o que caracteriza a variabilidade entre os biótipos resistentes. Essas informações poderão ser utilizadas no planejamento de estratégias de manejo das populações resistentes e na prevenção da ocorrência de novas áreas com buva resistente ao glyphosate.Glyphosate-resistant biotypes of Conyza spp. (hairy fleabane, horseweed in crop areas in the western and southwestern regions of the state of Paraná, Brazil, cause great management, economic, and environmental problems. This experiment aimed to determine the existence of horseweed biotypes resistant to glyphosate in the suspected populations collected from farms in western

  18. Prevalencia de anticuerpos anti-Leptospira spp. en personas con exposición laboral en el departamento del Tolima / Prevalence of anti-Leptospira spp. antibodies among people with occupational exposure in Tolima Department

    Directory of Open Access Journals (Sweden)

    Blanca L. Guzmán-Barragán

    2016-05-01

    Full Text Available Resumen Objetivo: estimar la prevalencia de anticuerpos IgM contra Leptospira spp., mediante el Ensayo de Inmunoabsorción Ligado a Enzimas (elisa, en la población de riesgo laboral de 8 municipios del Tolima. Metodología: se obtuvieron muestras de sangre de 261 empleados, las cuales fueron analizadas mediante la técnica de elisa para la detección de anticuerpos IgM anti-Leptospira spp., seguido de mat y serotipificación. Resultado: se estimó una seroprevalencia del 25,29%, con una seroreactividad mayor en trabajadores de plantas de beneficio animal (34,2%, recolección de residuos sólidos (27,1% y trabajadores de acueducto y alcantarillado (14,8%. La actividad en plantas de beneficio animal se identificó como factor de riesgo de Leptospira spp. (OR=1,86. Los serovares identificados fueron L. Bratislava (16, Ballum (5, Tarassovi (3, Hebdomadis (2, Sejroe (2 y Icterhemorragiae (1. El municipio de Libano presento el mayor porcentaje de positividad (36,96%, seguido de Espinal y Guamo con 28,57% cada uno. Discusión: la evaluación del sistema de vigilancia indicó deficiencia en recursos y debilidades de los profesionales de la salud al desconocer los procedimientos, investigación, diagnóstico y notificación de la enfermedad. Conclusiones: la leptospirosis está presente en poblaciones de riesgo laboral en el Tolima y se hace necesario abordar esta problemática en la población de otros municipios y los animales transmisores de la enfermedad. / Abstract Objective: to estimate the prevalence of IgM antibodies against Leptospira spp. Using the enzyme-linked immunosorbent assay (elisa in a population at occupational risk from 8 municipalities of the Tolima department, Colombia. Methodology: blood samples were collected from 261 employees and analyzed with the elisa technique to detect IgM and anti-Leptospira spp. antibodies. This was followed by mat and serotyping. Results: a seroprevalence of 25.29% was estimated, with higher

  19. Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat

    Energy Technology Data Exchange (ETDEWEB)

    Babauta, Jerome T. [Washington State Univ., Pullman, WA (United States); Atci, Erhan [Washington State Univ., Pullman, WA (United States); Ha, Phuc T. [Washington State Univ., Pullman, WA (United States); Lindemann, Stephen R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Ewing, Timothy [Washington State Univ., Pullman, WA (United States); Call, Douglas R. [Washington State Univ., Pullman, WA (United States); Fredrickson, James K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Beyenal, Haluk [Washington State Univ., Pullman, WA (United States)

    2014-01-01

    Phototrophic microbial mats frequently exhibit sharp, light-dependent redox gradients that regulate microbial respiration on specific electron acceptors as a function of depth. In this work, a benthic phototrophic microbial mat from Hot Lake, a hypersaline, epsomitic lake located near Oroville in north-central Washington, was used to develop a microscale electrochemical method to study local electron transfer processes within the mat. To characterize the physicochemical variables influencing electron transfer, we initially quantified redox potential, pH, and dissolved oxygen gradients by depth in the mat under photic and aphotic conditions. We further demonstrated that power output of a mat fuel cell was light-dependent. To study local electron transfer processes, we deployed a microscale electrode (microelectrode) with tip size ~20 μm. To enrich a subset of microorganisms capable of interacting with the microelectrode, we anodically polarized the microelectrode at depth in the mat. Subsequently, to characterize the microelectrode- associated community and compare it to the neighboring mat community, we performed amplicon sequencing of the V1-V3 region of the 16S gene. Differences in Bray-Curtis beta diversity, illustrated by large changes in relative abundance at the phylum level, suggested successful enrichment of specific mat community members on the microelectrode surface. The microelectrode-associated community exhibited substantially reduced alpha diversity and elevated relative abundances of Prosthecochloris, Loktanella, Catellibacterium, other unclassified members of Rhodobacteraceae, Thiomicrospira, and Limnobacter, compared with the community at an equivalent depth in the mat. Our results suggest that local electron transfer to an anodically polarized microelectrode selected for a specific microbial population, with substantially more abundance and diversity of sulfur-oxidizing phylotypes compared with the neighboring mat community.

  20. A serological survey of Brucella spp., Salmonella spp., Toxoplasma gondii and Trichinella spp. in Iberian fattening pigs reared in free-range systems.

    Science.gov (United States)

    Hernández, M; Gómez-Laguna, J; Tarradas, C; Luque, I; García-Valverde, R; Reguillo, L; Astorga, R J

    2014-10-01

    Zoonotic agents such as Brucella spp., Salmonella spp., Toxoplasma gondii and Trichinella spp., all considered high-risk zoonotic pathogens by the European Food Safety Agency (EFSA), may cause no symptoms of infection in free-range pigs yet still have a significant public health impact. A serological survey was therefore performed to determine the history of occurrence of these pathogens in such pigs in southern Spain. A total of 709 serum samples were collected at abattoir from pigs from 79 farms and analysed for specific antibodies against the above pathogens using commercially available ELISA kits. Encysted Trichinella spp. larvae were also sought following the artificial digestion method of diaphragm pillar muscle. The results showed Salmonella spp. to be widely distributed among the sampled herds [73.42%, 95% confidence interval (CI95 ) 65.6-81.78] and Toxoplasma gondii to be present in over half (58.23%, CI95 47.33-69.07). The seroprevalence of Brucella spp. was very low (3.8%, CI95 0.18-7.42), and antibodies against Trichinella spp. were not detected. No encysted Trichinella spp. larvae were microscopically detected.

  1. Small rodents as reservoirs of Cryptosporidium spp. and Giardia spp. in south-western Poland

    Directory of Open Access Journals (Sweden)

    Agnieszka Perec-Matysiak

    2015-02-01

    Full Text Available [i]Cryptosporidium[/i] spp. and [i]Giardia[/i] spp. have been detected in a range of host species, including rodents. The aim of this study was to determine the distribution of these pathogens and recognition of the reservoir role of rodents in the maintenance of these pathogens in south-western Poland. Additionally, preliminary molecular studies were conducted to elucidate the species and genotypes of [i]Cryptosporidium[/i] and [i]Giardia[/i] identified in this study. Stool samples (n=266 from [i]A. agrarius[/i],[i] A. flavicollis[/i] and [i]M. glareolus[/i], were subjected for analyses. Values of prevalence were 61.7, 68.3 and 68.1%, respectively, for [i]Cryptosporidium[/i] spp. and 41.7, 24.4 and 38.4%, respectively, for [i]Giardia[/i] spp. There was a statistically significant correlation between host species and [i]Giardia[/i] infection where[i] A. agrarius[/i] was the species of the highest prevalence. Statistically significant differences were not found for comparisons made for study sites and occurrence of [i]Giardia[/i] spp. and [i]Cryptosporidium[/i] spp. Due to preliminary nested PCR results, specific amplifications of [i]Cryptosporidium[/i] COWP and SSU rRNA genes were obtained for several isolates taken from rodent host species. One isolate recovered from [i]A. agrarius[/i] (from a semi-aquatic, urban area was identified as [i]C. parvum[/i] and revealed 100% similarity with sequences obtained from humans. To the best of the knowledge of the authors, this is the first record of the [i]C. parvum[/i] zoonotic species from the striped field mouse. Also recorded were the first findings of [i]C. ubiquitum[/i] from three small rodent species.

  2. A Biofilm Treatment Approach for Produced Water from Hydraulic Fracturing Using Engineered Microbial Mats

    Science.gov (United States)

    Akyon, B.; Stachler, E.; Bibby, K. J.

    2015-12-01

    Hydraulic fracturing results in large volumes of wastewater, called "produced water". Treatment of produced water is challenged by its high salt, organic compound, and radionuclide concentrations. Current disposal approaches include deep well injection and physical-chemical treatment for surface disposal; however, deep well injection has been recently linked to induced seismicity and physical-chemical treatments suffer from fouling and high cost. The reuse of the produced water has emerged as a desirable management option; however, this requires pretreatment to generate a water of usable quality and limit microbial activity. Biological treatment is an underexplored area in produced water management and has the potential to remove organics and reduce overall costs for physiochemical treatment or reuse. Suspended growth biological treatment techniques are known to be limited by salinity motivating a more robust biofilm approach: 'microbial mats'. In this study, we used engineered microbial mats as a biofilm treatment for the produced water. Evaluation of the biodegradation performance of microbial mats in synthetic and real produced waters showed microbial activity at up to 100,000 mg/L TDS concentration (three times the salt concentration of the ocean). Organic removal rates reached to 1.45 mg COD/gramwet-day at 91,351 mg/L TDS in real produced water samples and initial evaluation demonstrated the potential for field-scale application. Metagenomic analyses of microbial mats demonstrated an adaptive shift in the microbial community treating different samples, suggesting the wide applicability of this treatment approach for produced waters with varying chemical composition. On-going studies focus on the evaluation of the removal of the organics and the contaminants of high concern in produced water using microbial mats as well as the effect of the biofilm growth conditions on the biodegradation in changing salt concentrations.

  3. Total mercury and methyl-mercury contents and accumulation in polar microbial mats.

    Science.gov (United States)

    Camacho, Antonio; Rochera, Carlos; Hennebelle, Raphaëlle; Ferrari, Christophe; Quesada, Antonio

    2015-03-15

    Although polar regions are considered isolated and pristine areas, the organisms that inhabit these zones are exposed to global pollution. Heavy metals, such as mercury, are global pollutants and can reach almost any location on Earth. Mercury may come from natural, volcanic or geological sources, or result from anthropogenic sources, in particular industrial or mining activities. In this study, we have investigated one of the most prominent biological non-marine communities in both polar regions, microbial mats, in terms of their Hg and methyl-mercury (MeHg) concentrations and accumulation capacities. The main hypotheses posed argued on the importance of different factors, and to test them, we have measured Hg concentrations in microbial mats that were collected from 6 locations in different ecological situations. For this purpose, the direct anthropogenic impacts, volcanic influences, proximity to the seashore, latitudinal gradients and C contents were investigated. Our results show that, other than the direct anthropogenic influence, none of the other hypotheses alone satisfactorily explains the Hg content in microbial mats. In contrast, the MeHg contents were noticeably different between the investigated locations, with a higher proportion of MeHg on the McMurdo Ice Shelf (Antarctica) and a lower proportion on Ward Hunt Island (High Arctic). Furthermore, our results from in situ experiments indicated that the microbial mats from South Shetland Islands could quickly accumulate (48 h) Hg when Hg dissolved salts were supplied. Over short-term periods, these mats do not transform Hg into MeHg under field conditions.

  4. Standardization of a quantification method for Salmonella spp. and Shigella spp. in specific liquid media

    Directory of Open Access Journals (Sweden)

    Sandra Patricia Rivera

    2010-03-01

    Full Text Available Introduction: Chlorination is the most widely used disinfection process for drinking water production. The formation of chlorination carcinogenic by-products and chlorine intoxication by direct manipulation in small communities has motivated the study of alternative disinfection processes. In this sense, processes of advanced oxidation (PAOs have yielded promising results. Escherichia coli (E. coli is customarily used as faecal bacterial indicator to determine the efficiency of disinfection processes. However, it has been shown that E. coli is less resistant to disinfection than other enteric bacteria such as Shigella spp. and Salmonella spp. Additionally, the viable non-culturable (VNC state yields bacteria which are not detectable on many culture media.Objective: The main objective is to standardize a method for counting Salmonella spp. and Shigella spp. in specific liquid media to reliably quantify the bacteriological potential risk related to disinfection processes based on PAO.Methods: The study followed a randomized bi-factorial experimental design and the Duncan multiple comparison test. This design allowed the selection of specific liquid media to fittingly standardize the counting of Salmonella spp. and Shigella spp.Results: We found that the best broth for counting Salmonella typhimurium strain at different concentrations in pure and mixed cultures was the Rappaport broth RP, the EE broth also allowed growing the two bacterial species tested in this research. Nonetheless, the latter results suggest the use of additional tests for this particular broth.Discussion: There was a variation in the counting results when pure cultures were used compared to those obtained from mixtures of microorganisms. It was also noted that Salmonella typhimurium and Shigella sonnei, were recovered from minimal concentrations in both RP and EE broths, respectively. To some extent, this suggests an additional confirmative method when using the EE® broth

  5. Standardization of a quantification method for Salmonella spp. and Shigella spp. in specific liquid media

    Directory of Open Access Journals (Sweden)

    Sandra Patricia Rivera

    2010-09-01

    Full Text Available Introduction: Chlorination is the most widely used disinfection process for drinking water production. The formation of chlorination carcinogenic by-products and chlorine intoxication by direct manipulation in small communities has motivated the study of alternative disinfection processes. In this sense, processes of advanced oxidation (PAOs have yielded promising results. Escherichia coli (E. coli is customarily used as faecal bacterial indicator to determine the efficiency of disinfection processes. However, it has been shown that E. coli is less resistant to disinfection than other enteric bacteria such as Shigella  spp. and Salmonella  spp. Additionally, the viable non-culturable (VNC state yields bacteria which are not detectable on many culture media. Objective: The main objective is to standardize a method for counting Salmonella  spp. and Shigella  spp. in specific liquid media to reliably quantify the bacteriological potential risk related to disinfection processes based on PAO. Methods: The study followed a randomized bi-factorial experimental design and the Duncan multiple comparison test. This design allowed the selection of specific liquid media to fittingly standardize the counting of Salmonella  spp. and Shigella  spp. Results: We found that the best broth for counting Salmonella typhimurium strain at different concentrations in pure and mixed cultures was the Rappaport broth RP, the EE broth also allowed growing the two bacterial species tested in this research. Nonetheless, the latter results suggest the use of additional tests for this particular broth. Discussion: There was a variation in the counting results when pure cultures were used compared to those obtained from mixtures of microorganisms. It was also noted that Salmonella typhimurium and Shigella sonnei, were recovered from minimal concentrations in both RP and EE broths, respectively. To some extent, this suggests an additional confirmative method when using the

  6. Contamination by Salmonella spp., Campylobacter spp. and Listeria spp. of most popular chicken- and pork-sausages sold in Reunion Island.

    Science.gov (United States)

    Trimoulinard, A; Beral, M; Henry, I; Atiana, L; Porphyre, V; Tessier, C; Leclercq, A; Cardinale, E

    2017-03-27

    One of the most popular meat products of the local "cuisine" is sausage composed with 100% chicken or 100% pork. In this study, we aimed to determine the presence of Salmonella spp., Campylobacter spp. and Listeria spp. in chicken- and pork-sausages, quantify Salmonella spp. population and identify the factors that could be associated with contamination in the outlets. Two hundred and three batches of pork and chicken sausages were randomly collected from 67 local outlets (supermarkets, groceries and butcher shops). Salmonella spp. was detected in 11.8% (95% confidence interval (CI): [10.0; 13.5]) of samples, Campylobacter spp. in 1.5% [0.7; 4.2] and Listeria monocytogenes in 5.9% [4.4; 7.3]. Most probable number of Salmonella spp. varied between 6cfu per gram to 320cfu per gram. Salmonella serotypes isolated from pork and chicken sausages were S. Typhimurium (45.8%), S. London (20.8%), S. Derby (16.7%), S. Newport (8.33%), S. Blockley (4.2%) and S. Weltevreden (4.17%). Using a logistic (mixed-effect) regression model, we found that Salmonella spp. contamination was positively associated with sausages sold in papers or plastic bags and no control of rodents. Chicken sausages were associated with a decreasing risk of Salmonella contamination. Listeria monocytogenes contamination was positively associated with the presence of fresh rodent droppings in the outlet and negatively when the staff was cleaning regularly their hands with soap and water or water only. All the sampled outlets of Reunion Island were not equivalent in terms of food safety measures. Increasing awareness of these traders remains a cornerstone to limit the presence of Salmonella spp. and Listeria spp. in sausages, particularly in a tropical context (high temperature and humidity).

  7. Anti-Leptospira spp. antibodies in captive animals in Paraíba State

    Directory of Open Access Journals (Sweden)

    Arthur Brasil

    2013-12-01

    Full Text Available The aim of this survey was to verify the occurrence of anti-Leptospira spp. antibodies in captive animals in the Parque Zoobotânico Arruda Câmara, João Pessoa, Paraíba State, Northeastern Brazil. Blood samples were collected from 49 animals: 26 mammals of the species Sapajus libidinosus, Cebus flavius, Saimiri sciureu, Coendu sp., Pseudalopex vetulus, Leopardus pardalis, Leopardus tigrinus, Galactitis vitata, Eira barbara, Nasua nasua, Tayassu tajacu and Ratus norvegicus; 10 birds of the species Penelope jacucaca, Pavo cristatus, Anodorhynchus hyacinthinus, Ara chlorothpterus, Pionites leucogaster, Polyborus plancus, Geranoaetus melanoleucus and Urubitinga urubitinga; and 13 reptiles of the species Caiman latirostris, Paleosuchus trigonatus, Caiman crocodilus, Tupinabis merinae, Tupinambis teguixin, Boa constrictor, Corallus hortulanus, Python molurus, Bufocephala vanderhaegei, Geochelone denticulata and Geochelone carboraria. Sera were examined by the microscopic agglutination teste (MAT using 24 serovars as antigens and cut-off point of 1:100. One ocelot (Leopardo pardalis presented positive reaction for the Icterohaemorrhagiae serovar with titer of 100, however, it did not show any clinical sign of the infection. Sinantropic rodents are the main reservoirs of this serovar, which suggests the need of maintenance and continuous evaluation of rodent control programs.

  8. Seroprevalence of Neospora Spp. in Horses in North East of Iran

    Directory of Open Access Journals (Sweden)

    MH Hosseini

    2011-06-01

    Full Text Available Background: Neospora caninum, an obligate intracellular protozoan parasite, is recognized as a major cause of abortion in cattle, while limited information is presently available on the seropreva­lence of Neospora antibodies in horses' worldwide .The aim of the present study was to de­termine serologic prevalence of Neospora infection in horses in Iran.Methods: Sera from 150 horses from Mashhad suburb in Razavi Khorasan Province, northeast Iran were examined for antibodies to Neospora spp. using Neospora modified direct agglutina­tion test (N-MAT.Results: Antibodies to this parasite were detected in 45 (30% of the examined serum samples. Thirty four percent of the samples had titer of 1:40 while then reduced to 30% when 1:80 serum dilution was applied as significant cut off titer.Conclusion: This study is the first investigation carried out on the Neospora in horses in Iran and indi­cates that horses in Iran are exposed to this parasite.

  9. Exotic Small Mammals as Potential Reservoirs of Zoonotic Bartonella spp.

    OpenAIRE

    2009-01-01

    To evaluate the risk for emerging human infections caused by zoonotic Bartonella spp. from exotic small mammals, we investigated the prevalence of Bartonella spp. in 546 small mammals (28 species) that had been imported into Japan as pets from Asia, North America, Europe, and the Middle and Near East. We obtained 407 Bartonella isolates and characterized them by molecular phylogenetic analysis of the citrate synthase gene, gltA. The animals examined carried 4 zoonotic Bartonella spp. that cau...

  10. Antimicrobial resistance in Campylobacter spp isolated from broiler flocks

    OpenAIRE

    Kuana, Suzete Lora; SANTOS Luciana Ruschel dos; RODRIGUES, Laura Beatriz; Anderlise BORSOI; Moraes, Hamilton Luis do Souza; Salle, Carlos Tadeu Pippi; Nascimento, Vladimir Pinheiro do

    2008-01-01

    The aim of this study was to assess the antimicrobial susceptibility of 62 Campylobacter spp. strains obtained from broiler flocks using the agar diffusion method. The Campylobacter spp strains were isolated from 22 flocks aged between 3 and 5 weeks of life, isolated from cloacae swabs, stools and cecal droppings in the farm and from the carcass rinsing in the slaughterhouse. Campylobacter spp strains were tested on Mueller-Hilton (MH) agar (27 samples) and MH plus TTC agar (35 samples). The ...

  11. 21 CFR 866.3035 - Arizona spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    .... The identification aids in the diagnosis of disease caused by bacteria belonging to the genus Arizona and provides epidemiological information on diseases caused by these microorganisms. Arizona spp....

  12. 21 CFR 866.3630 - Serratia spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... identification aids in the diagnosis of disease caused by bacteria belonging to the genus Serratia and provides epidemiological information on these diseases. Serratia spp. are occasionally associated with...

  13. 21 CFR 866.3065 - Bordetella spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... identification aids in the diagnosis of diseases caused by bacteria belonging to the genus Bordetella and provides epidemiological information on these diseases. Bordetella spp. cause whooping cough...

  14. Transpiration rates of rice plants treated with Trichoderma spp.

    Science.gov (United States)

    Doni, Febri; Anizan, I.; Che Radziah C. M., Z.; Yusoff, Wan Mohtar Wan

    2014-09-01

    Trichoderma spp. are considered as successful plant growth promoting fungi and have positive role in habitat engineering. In this study, the potential for Trichoderma spp. to regulate transpiration process in rice plant was assessed experimentally under greenhouse condition using a completely randomized design. The study revealed that Trichoderma spp. have potential to enhance growth of rice plant through transpirational processes. The results of the study add to the advancement of the understanding as to the role of Trichoderma spp. in improving rice physiological process.

  15. The potential role of migratory birds in transmission cycles of Babesia spp., Anaplasma phagocytophilum, and Rickettsia spp.

    Science.gov (United States)

    Hildebrandt, Anke; Franke, Jan; Meier, Frank; Sachse, Svea; Dorn, Wolfram; Straube, Eberhard

    2010-06-01

    Babesia spp., Anaplasma phagocytophilum, and Rickettsia spp. are potentially emerging tick-borne pathogens, whereas many issues about their ecology, e.g. reservoir host specificity, are still unclear. In spring 2007, we collected 191 feeding Ixodes ricinus ticks from 99 birds of 11 different species on a German bird conservation island in the Baltic Sea. Babesia spp. were detected in 4.7% (9/191), A. phagocytophilum was present in 2.6% (5/191), and Rickettsia spp. were identified in 7.3% (14/191) of the investigated ticks. Further characterization of Babesia spp. infections resulted in B. divergens and B. microti. Among the Rickettsia spp. infections, we identified at least 2 different species: R. monacensis and R. helvetica. Furthermore, 2 ticks harboured mixed infections. Our study provides first interesting insights into the role of migratory birds in the distribution of several emerging tick-borne pathogens.

  16. Effects of Maté Tea Intake on ex Vivo LDL Peroxidation Induced by Three Different Pathways

    Directory of Open Access Journals (Sweden)

    Ruth Lobato T. Matsumoto

    2009-06-01

    Full Text Available Yerba maté (Ilex paraguariensis is a native South America plant widely consumed as different beverages. Yerba maté leaves contains high concentrations of polyphenols that are responsible for its high in vitro and in vivo antioxidant activity. The in vivo antioxidant properties vis a vis LDL particles has not yet been studied for maté tea, the roasted yerba maté product. The aim of this study was to evaluate the antioxidant activity of maté tea ingestion ex vivo on human LDL. Fasting peripheral venous blood samples of healthy women were taken in three different times: before drinking the tea, one hour later and after one week (7 days of daily consumption of maté tea. The isolated LDL was oxidized by three different pathways [copper (CuSO4, lipoxygenase and peroxynitrite (SIN-1]. Conjugated dienes and structural modifications on LDL were evaluated. Ingestion of maté tea increased LDL resistance towards ex vivo copper oxidation, but did not alter the peroxidation pattern when SIN-1 or lipoxygenase were used as oxidants

  17. Fabrication of Pamidronic Acid-Immobilized TiO2/Hydroxyapatite Composite Nanofiber Mats for Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Yong-Suk Shin

    2013-01-01

    Full Text Available TiO2/hydroxyapatite (TiO2/HA composite nanofiber mats were fabricated using an electrospinning technique. Subsequently, pamidronic acid (PDA was immobilized on the surface of the TiO2/HA nanofiber mat to improve osseointegration. X-ray photoelectron microscopy and scanning electron microscopy (SEM were used to characterize the structure and morphology of the PDA-immobilized TiO2/HA composite nanofiber mat (TiO2/HA-P. The potential of TiO2/HA-P as a bone scaffold was assessed by examining the cell adhesion and proliferation of osteoblasts and osteoclasts. The adhesion and proliferation of osteoblasts on the TiO2/HA-P composite nanofiber mat were slightly higher than those on the TiO2/HA composite nanofiber mat, whereas the viability of osteoclasts on the TiO2/HA-P nanofiber mat was significantly suppressed. These results suggest that the TiO2/HA-P nanofiber mat has the potential for use as a therapeutic bone implant.

  18. Dynamics of bacterial populations during bench-scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats.

    Science.gov (United States)

    Ali, Nidaa; Dashti, Narjes; Salamah, Samar; Sorkhoh, Naser; Al-Awadhi, Husain; Radwan, Samir

    2016-03-01

    This study describes a bench-scale attempt to bioremediate Kuwaiti, oily water and soil samples through bioaugmentation with coastal microbial mats rich in hydrocarbonoclastic bacterioflora. Seawater and desert soil samples were artificially polluted with 1% weathered oil, and bioaugmented with microbial mat suspensions. Oil removal and microbial community dynamics were monitored. In batch cultures, oil removal was more effective in soil than in seawater. Hydrocarbonoclastic bacteria associated with mat samples colonized soil more readily than seawater. The predominant oil degrading bacterium in seawater batches was the autochthonous seawater species Marinobacter hydrocarbonoclasticus. The main oil degraders in the inoculated soil samples, on the other hand, were a mixture of the autochthonous mat and desert soil bacteria; Xanthobacter tagetidis, Pseudomonas geniculata, Olivibacter ginsengisoli and others. More bacterial diversity prevailed in seawater during continuous than batch bioremediation. Out of seven hydrocarbonoclastic bacterial species isolated from those cultures, only one, Mycobacterium chlorophenolicum, was of mat origin. This result too confirms that most of the autochthonous mat bacteria failed to colonize seawater. Also culture-independent analysis of seawater from continuous cultures revealed high-bacterial diversity. Many of the bacteria belonged to the Alphaproteobacteria, Flavobacteria and Gammaproteobacteria, and were hydrocarbonoclastic. Optimal biostimulation practices for continuous culture bioremediation of seawater via mat bioaugmentation were adding the highest possible oil concentration as one lot in the beginning of bioremediation, addition of vitamins, and slowing down the seawater flow rate.

  19. Phenolic Antioxidants Identified by ESI-MS from Yerba Maté (Ilex paraguariensis and Green Tea (Camelia sinensis Extracts

    Directory of Open Access Journals (Sweden)

    Patricia O Carvalho

    2007-03-01

    Full Text Available Aqueous extracts of green yerba maté (Ilex paraguariensis and green tea (Camellia sinensis are good sources of phenolic antioxidants, as already described in the literature. The subject of this study were organic extracts from yerba maté, both green and roasted, and from green tea. Their phenolic profiles were characterized by direct infusion electrospray insertion mass spectrometry (ESI-MS and their free radical scavenging activity was determined by the DPPH assay. Organic extracts containing phenolic antioxidants might be used as natural antioxidants by the food industry, replacing the synthetic phenolic additives used nowadays. Ethanolic and aqueous extracts from green yerba maté, roasted yerba maté and green tea showed excellent DPPH scavenging activity (>89%. The ether extracts from green and roasted yerba maté displayed a weak scavenging activity, different from the behavior observed for the green tea ether extract. The main phenolic compounds identified in green yerba maté water and ethanolic extracts were: caffeic acid, quinic acid, caffeoyl glucose, caffeoylquinic acid, feruloylquinic acid, dicaffeoylquinic acid and rutin. After the roasting process two new compounds were formed: caffeoylshikimic acid and dicaffeoylshikimic acid. The ethanolic extracts from yerba maté, both roasted and green, with lower content of phenolic compounds (3.80 and 2.83 mg/mL presented high antioxidant activity and even at very low phenolic concentrations, ether extract from GT (0.07 mg/mL inhibited DPPH over 90%.

  20. Modifying landing mat material properties may decrease peak contact forces but increase forefoot forces in gymnastics landings.

    Science.gov (United States)

    Mills, Chris; Yeadon, Maurice R; Pain, Matthew T G

    2010-09-01

    This study investigated how changes in the material properties of a landing mat could minimise ground reaction forces (GRF) and internal loading on a gymnast during landing. A multi-layer model of a gymnastics competition landing mat and a subject-specific seven-link wobbling mass model of a gymnast were developed to address this aim. Landing mat properties (stiffness and damping) were optimised using a Simplex algorithm to minimise GRF and internal loading. The optimisation of the landing mat parameters was characterised by minimal changes to the mat's stiffness (<0.5%) but increased damping (272%) compared to the competition landing mat. Changes to the landing mat resulted in reduced peak vertical and horizontal GRF and reduced bone bending moments in the shank and thigh compared to a matching simulation. Peak bone bending moments within the thigh and shank were reduced by 6% from 321.5 Nm to 302.5Nm and GRF by 12% from 8626 N to 7552 N when compared to a matching simulation. The reduction in these forces may help to reduce the risk of bone fracture injury associated with a single landing and reduce the risk of a chronic injury such as a stress fracture.

  1. Fabrication and Evaluation of Nanostructured Herbal Oil/Hydroxypropyl-β-Cyclodextrin/Polyvinylpyrrolidone Mats for Denture Stomatitis Prevention and Treatment.

    Science.gov (United States)

    Tonglairoum, Prasopchai; Ngawhirunpat, Tanasait; Rojanarata, Theerasak; Kaomongkolgit, Ruchadaporn; Opanasopit, Praneet

    2016-12-01

    This work aims to develop the herbal oil-incorporated nanostructure mats with antifungal activity for the prevention and treatment of Candida-associated denture stomatitis. The nanofiber mats loaded with betel oil or clove oil were fabricated via electrospinning process. The morphologies and physicochemical properties of the herbal oil loaded nanofiber mats were examined using scanning electron microscopy (SEM), Fourier transform infrared spectroscopy (FT-IR), differential scanning calorimetry (DSC), and mechanical testing. The release characteristic, antifungal activity, and cytotoxicity were also investigated. The SEM images confirmed the homogeneous and smooth nanoscale fibers. The addition of the herbal oil into the nanofiber mats reduced the fiber diameters. The DSC and FT-IR results confirmed the presence of the oil in the nanofiber mats. The herbal oils can be released from the mats in a very fast manner and inhibit the growth of candida cells within only few minutes after contact. These nanofiber mats may be beneficial for the prevention and treatment of denture stomatitis.

  2. Characterization of geographically distinct bacterial communities associated with coral mucus produced by Acropora spp. and Porites spp.

    Science.gov (United States)

    McKew, B A; Dumbrell, A J; Daud, S D; Hepburn, L; Thorpe, E; Mogensen, L; Whitby, C

    2012-08-01

    Acropora and Porites corals are important reef builders in the Indo-Pacific and Caribbean. Bacteria associated with mucus produced by Porites spp. and Acropora spp. from Caribbean (Punta Maroma, Mexico) and Indo-Pacific (Hoga and Sampela, Indonesia) reefs were determined. Analysis of pyrosequencing libraries showed that bacterial communities from Caribbean corals were significantly more diverse (H', 3.18 to 4.25) than their Indonesian counterparts (H', 2.54 to 3.25). Dominant taxa were Gammaproteobacteria, Alphaproteobacteria, Firmicutes, and Cyanobacteria, which varied in relative abundance between coral genera and region. Distinct coral host-specific communities were also found; for example, Clostridiales were dominant on Acropora spp. (at Hoga and the Mexican Caribbean) compared to Porites spp. and seawater. Within the Gammproteobacteria, Halomonas spp. dominated sequence libraries from Porites spp. (49%) and Acropora spp. (5.6%) from the Mexican Caribbean, compared to the corresponding Indonesian coral libraries (<2%). Interestingly, with the exception of Porites spp. from the Mexican Caribbean, there was also a ubiquity of Psychrobacter spp., which dominated Acropora and Porites libraries from Indonesia and Acropora libraries from the Caribbean. In conclusion, there was a dominance of Halomonas spp. (associated with Acropora and Porites [Mexican Caribbean]), Firmicutes (associated with Acropora [Mexican Caribbean] and with Acropora and Porites [Hoga]), and Cyanobacteria (associated with Acropora and Porites [Hoga] and Porites [Sampela]). This is also the first report describing geographically distinct Psychrobacter spp. associated with coral mucus. In addition, the predominance of Clostridiales associated with Acropora spp. provided additional evidence for coral host-specific microorganisms.

  3. Comparação dos sistemas de cultivo nativo e adensado de erva mate, Ilex paraguariensis St. Hil., quanto à ocorrência e flutuação populacional de insetos Occurrence and population fluctuation of insects on native and dense cropping systems of maté, Ilex paraguariensis St. Hil

    Directory of Open Access Journals (Sweden)

    Larissa R. Borges

    2003-12-01

    Full Text Available This research was carried out in order to compare the occurrence of insects in two maté cultivation systems, native and high tree density. It was performed from August/2000 to September/2001, in a private property in São Mateus do Sul county, in Paraná State, Brazil. Visual inspections of trees and light traps were used to evaluate insect populations in both areas. For Hedypathes betulinus (Klug (Coleoptera, Cerambycidae, only six adults were observed in the dense area. Based on presence of sawdust at the basis of the trunk, it was obtained that the number of attacked trees did not surpass 11% in either area. For Gyropsylla spegazziniana (Lizer y Trelles (Hemiptera, Psyllidae, the number of galls per tree was counted and it was observed that the population peak occurred from November to January. For Hylesia spp. (Lepidoptera, Saturniidae and Thelosia camina Schaus (Lepidoptera, Eupterotidae, the presence of caterpillars on the trees was noticed from September to February, with the population peak in November and December. Adults of Hylesia spp. were more numerous in February and March. Two species that were not previously recorded for Brazil on maté were identified: Hylesia paulex Dognin (83% and Hylesia remex Dyer (17%, collected with light traps. The maté caterpillar, T. camina was not collected with these traps. Nymphs and adults of Ceroplastes grandis Hempel (Hemiptera, Coccidae were observed along the year on the branches, with population peak between April and June for the nymphs and from September to November for the adults. It should be considered that despite higher insect incidence in the dense area compared to the native area, the first presents higher yield, and that with a good pest management program the insect problems can be minimized.

  4. MatSWMM – An open-source toolbox for designing real-time control of urban drainage systems

    OpenAIRE

    2016-01-01

    This manuscript describes the MatSWMM toolbox, an open-source Matlab, Python, and LabVIEW-based software package for the analysis and design of real-time control (RTC) strategies in urban drainage systems (UDS). MatSWMM includes control-oriented models of UDS, and the storm water management model (SWMM) of the US Environmental Protection Agency (EPA), as well as systematic-system edition functionalities. Furthermore, MatSWMM is also provided with a population-dynamics-based controller for UDS...

  5. Large red cyanobacterial mats (Spirulina subsalsa Oersted ex Gomont in the shallow sublittoral of the southern Baltic

    Directory of Open Access Journals (Sweden)

    Piotr Balazy

    2014-06-01

    Full Text Available We report the first observation of large red cyanobacterial mats in the southern Baltic Sea. The mats (up to 2.5 m in diameter were observed by SCUBA divers at 7.7 m depth on loamy sediments in the Gulf of Gdańsk in mid-November 2013. The main structure of the mat was formed by cyanobacteria Spirulina subsalsa Oersted ex Gomont; a number of other cyanobacteria, diatoms and nematode species were also present. After a few days in the laboratory, the red trichomes of S. subsalsa started to turn blue-green in colour, suggesting the strong chromatic acclimation abilities of this species.

  6. Evaluation of arboviruses of public health interest in free-living non-human primates (Alouatta spp., Callithrix spp., Sapajus spp.) in Brazil

    OpenAIRE

    2015-01-01

    INTRODUCTION: The aim of the present study was to evaluate the presence of arboviruses from the Flavivirus genus in asymptomatic free-living non-human primates (NHPs) living in close contact with humans and vectors in the States of Paraná and Mato Grosso do Sul, Brazil. METHODS: NHP sera samples (total n = 80, Alouatta spp. n = 07, Callithrix spp. n = 29 and Sapajus spp. n = 44) were screened for the presence of viral genomes using reverse transcription polymerase chain reaction and 10% ...

  7. Characterizing the nuclear proteome of Paracoccidioides spp.

    Science.gov (United States)

    Oliveira, Lucas Nojosa; Casaletti, Luciana; Báo, Sônia Nair; Borges, Clayton Luiz; de Sousa Lima, Patrícia; de Almeida Soares, Célia Maria

    2016-10-01

    Paracoccidioidomycosis is an endemic disease in Latin America, caused by thermo dimorphic fungi of the genus Paracoccidioides. Although previous proteome analyses of Paracoccidioides spp. have been carried out, the nuclear subproteome of this pathogen has not been described. In this way, we aimed to characterize the nuclear proteome of Paracoccidioides species, in the yeast form. For that, yeast cells were disrupted and submitted to cell fractionation. The purity of the nuclear fraction was confirmed by fluorescence and electron microscopy. Liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) allowed the identification of 867 proteins. In order to support our enrichment method for nuclear proteins, bioinformatics analysis were applied that allowed the identification of 281 proteins with nuclear localization. The analysis revealed proteins related to DNA maintenance, gene expression, synthesis and processing of messenger and ribosomal RNAs, likewise proteins of nuclear-cytoplasmic traffic. It was also possible to detect some proteins that are poorly expressed, like transcription factors involved in important roles such as resistance to abiotic stress, sporulation, cellular growth and DNA and chromatin maintenance. This is the first descriptive nuclear proteome of Paracoccidioides spp. that can be useful as an important platform base for fungi-specific nuclear processes.

  8. Anti- Sporothrix spp. activity of medicinal plants

    Directory of Open Access Journals (Sweden)

    Stefanie Bressan Waller

    Full Text Available ABSTRACT Cases of sporotrichosis in humans and animals without satisfactory clinical response have increased, a warning sign of strains resistant to conventional antifungal agents. The urgent search for alternative therapies was an incentive for research on medicinal plants with anti-Sporothrix spp. properties. A bibliographic survey was performed based on scientific papers about in vitro and in vivo antifungal activity of essential oils and extracts of plants in differents solvents against the fungal of the Sporothrix schenckii complex. The study methodology consisted of a literature review in Google Scholar, Science Direct, Pubmed, Bireme and Springer link with papers from 1986 to 2015. We found 141 species of plants that were investigated, of which 100 species were concentrated in 39 botanical families that had confirmed anti-Sporothrix activity. Combretaceae, Asteraceae and Lamiaceae represented the botanical families with the greatest number of plants species with antifungal potential, using different methodologies. However, there are few studies with medicinal plants in experimental infection in animals that prove their activity in the treatment of sporotrichosis. It reinforces the need for further research related to standardization of in vitro methodologies and in vivo studies related to safety and to toxicity potential of these plants with anti-Sporothrix spp. activity.

  9. Distribution of pathogenic Naegleria spp in Thailand.

    Science.gov (United States)

    Tiewcharoen, S; Junnu, V

    2001-01-01

    Research concerning the distribution, isolation, viability, ultrastructure, morphology and immunogenicity of Naegleria fowleri has been increasing in Thailand during 1988-2000. The distribution of the organism was carried out from 1985 to 1987 in Si Sa Ket and Ubon Rachathani Provinces, after the first fatal case was reported in Si Sa Ket. Since then in a 1998 survey of N. fowleri in stagnant water around industrial areas was carried out in Pathum Thani, Samut Prakan and Lopburi provinces. The results showed that 10% of pathogenic Naegleria belonged to species fowleri as characterized by morphology and the occurrence of pathogenesis in mice after nasal inoculation. In the same year, Nacapunchai et al (1999) determined the prevalence of amebae in aquatic habitat of human environments in five parts of Thailand during the summer. Fourteen percent of free living Naegleria spp were found in both soil and water resources. Recent studies of the ultrastructure, factors affecting the viability and SDS-PAGE electrophoretic patterns of 3 Thai strains of pathogenic Naegleria spp indicated their similarities in morphological characteristics of pathogenic reference control, Naegleria fowleri CDC VO 3081. Additional study using a genetic approach to species criteria using allozyme electrophoresis had been conducted.

  10. Nanostructured Polylactic Acid/Candeia Essential Oil Mats Obtained by Electrospinning

    Directory of Open Access Journals (Sweden)

    Cláudia L. S. de Oliveira Mori

    2015-01-01

    Full Text Available This work aims to evaluate the effect of inclusion of different contents of candeia (Eremanthus erythropappus essential oil (whose alpha-bisabolol is the main terpene on the properties of polylactic acid (PLA nanostructured mats and their relationship with fiber morphology and structure. The interaction occurring between the PLA and the candeia essential oil was confirmed by thermal and microscopy analysis. Addition of candeia essential oil increased nanofiber diameter and decreased the glass transition and melting temperatures of the nanofibers, suggesting lower energy input for processing. Scanning electron microscopy (SEM images provided evidence of a homogeneous structure for the nanostructured mats. X-ray diffraction did not show differences in the crystallization of the nanofibers. This ongoing research confirms the possibility of incorporation of candeia essential oil in the production of nanofibers that will be studied for multipurpose applications.

  11. Transparent conducting film: Effect of mechanical stretching to optical and electrical properties of carbon nanotube mat

    Indian Academy of Sciences (India)

    Tsuyoshi Saotome; Hansang Kim; David Lashmore; H Thomas Hahn

    2011-07-01

    We describe in this paper a transparent conducting film (TCF). It is a fibrous layer of multiwalled carbon nanotubes (MWNTs), labeled a dilute CNT mat, that was prepared and unidirectionally stretched to improve both the optical and electrical properties. After stretching by 80% strain, transmittance at 550 nm wavelength was improved by 37% and sheet resistance was reduced to 71% of the original value. The improvement of the transmittance can be explained by increased area of the CNT mat after stretch, and the reduced sheet resistance can be explained by increased density of the CNT alignment in lateral direction due to contraction. Based on the microscopic observation before and after stretch, models to describe the phenomena are proposed. By further expanding on this method, it may be possible to obtain a transparent conducting carbon nanotube film which is crack-resistant for solar cell applications.

  12. MatSeis developer's guide:version 1.0.

    Energy Technology Data Exchange (ETDEWEB)

    McConnell, Lane Christopher; Young, Christopher John

    2007-05-01

    This guide is intended to enable researchers working with seismic data, but lacking backgrounds in computer science and programming, to develop seismic algorithms using the MATLAB-based MatSeis software. Specifically, it presents a series of step-by-step instructions to write four specific functions of increasing complexity, while simultaneously explaining the notation, syntax, and general program design of the functions being written. The ultimate goal is that that the user can use this guide as a jumping off point from which he or she can write new functions that are compatible with and expand the capabilities of the current MatSeis software that has been developed as part of the Ground-based Nuclear Explosion Monitoring Research and Engineering (GNEMRE) program at Sandia National Laboratories.

  13. First-time installation of a floor heating mat in a church

    Energy Technology Data Exchange (ETDEWEB)

    Hauck, E.

    Floor heating mats operate at a very low flow temperature of about 30/sup 0/C. This results in a considerable reduction of transfer losses and allows for the utilization of both renewable energy sources obtaining at a low level and waste heat. Floor heating mats need no costly and high-piling floor structure and are simply spread on to the foot fall-sound insulation. The system has been used successfully for heating a church in Belgium. The floor of the church was covered with Thermoflex heating elements consisting of PVC-coated Trevira fabric equipped with spacing fixators. The covered surface of 187 sqm was subdivided into 5 separately switchable circuits. A 30 kW low-temperature boiler was employed. The heating water with added antifreeze circulates throughout the total covered surface. Heating element costs amounted to DM 23,000, i.e. about DM 120 per sqm.

  14. Geosmin occurrence in riverine cyanobacterial mats: is it causing a significant health hazard?

    Science.gov (United States)

    Bláha, L; Sabater, S; Babica, P; Vilalta, E; Marsálek, B

    2004-01-01

    Toxicity endpoints (nonspecific cytotoxicity, hepatotoxicity, neurotoxicity, immunotoxicity, and mutagenicity) were studied in cyanobacterial mats obtained from a shallow river. Some of the cyanobacterial mats tested were known to be non-geosmin producers, while others were geosmin-producers. No microcystin-like compounds were detected by HPLC in any of the biofilm samples. The mutagenicity and neurotoxicity of biofilm metabolites was negligible, and generally weak adverse effects of biofilm extracts detected in a battery of in-vitro assays indicated relatively low human health risks associated with biofilm toxicity. While the toxicity responses detected in the studied biofilms were weak, effects were not related to production of geosmin. It was therefore concluded that the production of this metabolite cannot be taken as an indication per se of the existence of a health hazard.

  15. Electrospun ZnO/SiO2 hybrid nanofibrous mat for flexible ultraviolet sensor

    Science.gov (United States)

    Xi, Min; Wang, Xiaoxu; Zhao, Yong; Zhu, Zhengtao; Fong, Hao

    2014-03-01

    A freestanding/flexible hybrid mat consisting of crystalline ZnO nanofibers (˜75 wt. %) and amorphous SiO2 nanofibers (˜25 wt. %) was prepared by the technique of electrospinning followed by the pyrolysis in air at 650 °C. The electrospun ZnO/SiO2 hybrid mat was then studied to fabricate a flexible ultraviolet (UV) sensor, and the photo-response of this sensor was characterized under varied UV light intensities; additionally, the sensor performance under the bending condition was also evaluated. The results indicated that the flexible UV sensor had excellent sensitivity and reproducibility/reversibility, and it also exhibited high performance under the bending condition.

  16. Prominent reinforcing effect of chitin nanocrystals on electrospun polydioxanone nanocomposite fiber mats.

    Science.gov (United States)

    Zhu, Lei; Liang, Kai; Ji, Yali

    2015-04-01

    The ultra-strong nanocomposite fiber mats based on biodegradable polydioxanone (PDO) and chitin nanocrystals (ChiNCs) were successfully prepared by means of electrospinning. The ChiNCs are uniformly dispersed in the PDO matrix and mostly oriented along fiber long axis, resulting in a significant improvement in mechanical property. Moreover, the introduction of ChiNCs led to the increase of the glass-transition temperature (Tg) and thermal decomposition temperature (Td) of PDO elucidated by thermal analyses. In addition, the loading of ChiNCs caused very different In vitro degradation behavior compared to neat PDO fiber mat. Furthermore, in vitro cell culture results indicated that the addition of ChiNCs improved the cellular adhesion and proliferation.

  17. Disponibilidade de matéria seca em pastagens de capim-elefante irrigadas

    OpenAIRE

    Lopes,Rogério dos Santos; Fonseca,Dilermando Miranda da; Oliveira,Rubens Alves de; Nascimento Júnior,Domício do; Andrade,Alex Carvalho; Stock, Lorildo Aldo; Martins,Carlos Eugênio

    2003-01-01

    Com o objetivo de avaliar os efeitos da irrigação na disponibilidade de matéria seca em pastagens de capim-elefante, cv. Napier, foi conduzido um experimento durante dois anos no Setor de Agrostologia da UFV. A irrigação foi realizada por um sistema de aspersão convencional de média pressão, usando turno de rega variável. Observou-se que, nos dois períodos de seca abrangidos pelo experimento, a irrigação não conseguiu determinar diferenças significativas na disponibilidade de matéria seca do ...

  18. Mise au point de deux nouveaux matériaux à base de cobalt

    OpenAIRE

    CEA

    2014-01-01

    Des chercheurs du CEA, du CNRS, du Collège de France et de l’Université de Grenoble ont mis au point deux nouveaux matériaux à base de cobalt capables de remplacer le platine, métal rare et cher, dans la production d’hydrogène à partir d’eau (électrolyse). L’un peut fonctionner en solution aqueuse de pH neutre. Le second constitue le premier matériau catalytique « commutable » et sans métaux nobles jamais créé capable d’intervenir dans les deux réactions chimiques essentielles à l’électrolys...

  19. Combined Wave and Surge Overtopping of Levees: Flow Hydrodynamics and Articulated Concrete Mat Stability

    Science.gov (United States)

    2008-08-01

    technical report describes small-scale physical model tests simulating combined wave and storm surge overtopping of a typical levee cross sec- tion of...journal article . The 2 percent run-up elevation should be estimated using the run-up formulas of de Waal and van der Meer (1992) or Hughes (2004). If van...to place the mats over some type of filter layer ( geotextile or stone filter) that prevents the levee or embankment soil from leeching out between

  20. Unilateral undescended testicle with ipsilateral fixed-matted inguinal mass: A case report

    Directory of Open Access Journals (Sweden)

    Michael E Chua

    2016-01-01

    Full Text Available We described a rare occurrence of unilateral undescended testis with an ipsilateral fixed matted inguinal mass in a 15 month old male with normal tumor markers. Doppler ultrasound showed calcified masses with no obvious color blood flow. We discussed considerations in the management of the case and reiterated the importance of basic thorough medical history taking and physical examination as a vital step to prevent unnecessary surgical procedures as well as arriving at a correct diagnosis.

  1. Mat på arbetet dygnet runt? Arbete – Tid – Måltid

    DEFF Research Database (Denmark)

    Jørgensen, Michael Søgaard; Lagnevik, Magnus; Lindén, Anne-Lisa;

    nutritionister, som sociologer och företagsekonomer medverkar. I september 2008 hölls en workshop med utgångspunkt i rapporten ”Mat på arbetet dygnet runt”. Under workshopen deltog olika aktörer från båda sidor av Öresund, och denna slutrapport innehåller utöver en kunskapsöversikt och en jämförelse mellan...

  2. Electrospun PVDF graphene oxide composite fibre mats with tunable physical properties.

    OpenAIRE

    Issa, A. A. [احمد عبد السلام عيسى; Al-Maadeed, M.A.A.S.; Mrlik, M.; Luyt,A.S.

    2016-01-01

    This article is aimed at a basic physical characterization of electrospun PVDF/graphene oxide (GO) composite non-woven fibre mats. The morphological characterization of the prepared fabrics was performed via SEM investigations. Introduction of the GO during the electrospinning process caused significant changes in the crystalline structure of PVDF, and a transformation from α- to β-crystalline phases was achieved. Addition of the GO particles into PVDF did not only improve the thermal stabili...

  3. Electroactivity of PVDF electrospun fiber mats and ZNO-PVDF composites

    OpenAIRE

    Öğüt, Erdem; Ogut, Erdem

    2007-01-01

    Poly (vinylidene fluoride) (PVDF), an electroactive polymer, has great distinctions for its mechanical properties compared to highly brittle electroceramics. Its piezoelectricity however is not immediately utilizable after being cast in film form, and the cast PVDF film requires additional processes, such as mechanical stretching and poling. In this thesis, alternative to cast PVDF film, electroactive characteristics of PVDF fibrous mats produced by electrospinning are investigated to seek wh...

  4. Bentonite mat demonstration: Field performance evaluation of an alternative geosynthetic composite cover system

    Energy Technology Data Exchange (ETDEWEB)

    Serrato, M.G. [Westinghouse Savannah River Co., Aiken, SC (United States). Savannah River Site

    1994-12-31

    The Savannah River Site is investigating an alternative RCRA closure cover system configuration for hazardous solid-waste landfills. The bentonite mat demonstration is a field performance test of an alternative composite geosynthetic material cover configuration. The bentonite mat demonstration consists of four test pads; each test pad is a compacted sandy clay layer 30 ft wide, 80 ft long, and 2 ft deep. Three of the test pads will be blanketed with one of the commercially available bentonite mats (geosynthetic clay liner), then overlain by a flexible membrane liner to form the composite barrier. The remaining test pad will not contain any geosynthetic materials and will be used as the control pad for the demonstration. Each test pad will be constructed over a 4-ft sand layer. A series of access pipes will be embedded in the sand layer to provide a means for evacuating portions of the sand layer in order to create underlying cavities, thus inducing localized subsidence in the test pad. Material stress data will be collected to identify the composite barrier failure point. Infiltration data will be collected for each test pad to correlate permeability as a function of deflection. At the conclusion of the subsidence testing, the test pads will be dismantled to identify the failure mechanisms of the barriers. A finite-element analysis computer model is being developed to predict the structural behavior of the composite barrier system. The bentonite mat demonstration data will be used to verify this model, which will serve as a diagnostic tool for future designs. The formulation and execution of this demonstration is one element in achieving regulatory approval of the composite geosynthetic materials alternative cover system design configuration.

  5. Densidade populacional de Pratylenchus spp. em pastagens de Brachiaria spp. e sua influência na disponibilidade e na qualidade da forragem

    Directory of Open Access Journals (Sweden)

    Cassia de Carvalho

    2013-02-01

    Full Text Available Objetivando avaliar a densidade populacional de Pratylenchus brachyurus e Pratylenchus zeae, associados à Brachiaria brizantha, B. decumbens e B. humidicola, e sua influência na disponibilidade e na qualidade da forragem, realizou-se este trabalho. O experimento foi conduzido na Agropecuária Hisaeda, em Terenos, MS. Coletaram-se amostras de solo, raízes e parte aérea, em dez repetições ao acaso, de 1 m² cada, dos seguintes tratamentos: Bom, Intermediário e Ruim, caracterizados visualmente, considerando-se a percentagem de material verde das plantas. As densidades de P. brachyurus e P. zeae foram avaliadas nas amostras de solo e raízes. Na parte aérea, avaliou-se a disponibilidade de matéria seca dos materiais verde, morto e da rebrota, estado nutricional das plantas e qualidade da forragem. A fertilidade do solo foi determinada em todas as unidades amostrais. Ambos os nematoides foram identificados em todas as amostras, com maior número nas raízes (entre 87-311 P. brachyurus e 1-61 P. zeae.10 g-1 que no solo (de 0-8 P. brachyurus a 1-39 P. zeae.200 cm-3, no entanto, não houve diferenças significativas, na quantidade de espécimes, entre os tratamentos. Considerando-se que essas forrageiras são perenes e hospedam Pratylenchus spp., há tendência ao aumento da população desses patógenos, ao longo do tempo, podendo se tornar um sério problema fitossanitário.

  6. Severe Candida spp. infections: new insights into natural immunity.

    NARCIS (Netherlands)

    Meer, J.W.M. van der; Veerdonk, F.L. van de; Joosten, L.A.B.; Kullberg, B.J.; Netea, M.G.

    2010-01-01

    Invasive infections caused by Candida spp. are associated with high mortality. Colonisation by Candida spp. and the capacity of the host to recognise them as potential pathogens are essential steps in the development of these infections. The major pathogen-associated molecular patterns of Candida ar

  7. Free-living spirochetes from Cape Cod microbial mats detected by electron microscopy

    Science.gov (United States)

    Teal, T. H.; Chapman, M.; Guillemette, T.; Margulis, L.

    1996-01-01

    Spirochetes from microbial mats and anaerobic mud samples collected in salt marshes were studied by light microscopy, whole mount and thin section transmission electron microscopy. Enriched in cellobiose-rifampin medium, selective for Spirochaeta bajacaliforniensis, seven distinguishable spirochete morphotypes were observed. Their diameters ranged from 0.17 micron to > 0.45 micron. Six of these morphotypes came from southwest Cape Cod, Massachusetts: five from Microcoleus-dominated mat samples collected at Sippewissett salt marsh and one from anoxic mud collected at School Street salt marsh (on the east side of Eel Pond). The seventh morphotype was enriched from anoxic mud sampled from the north central Cape Cod, at the Sandy Neck salt marsh. Five of these morphotypes are similar or identical to previously described spirochetes (Leptospira, Spirochaeta halophila, Spirochaeta bajacaliforniensis, Spirosymplokos deltaeiberi and Treponema), whereas the other two have unique features that suggest they have not been previously described. One of the morphotypes resembles Spirosymplokos deltaeiberi (the largest free-living spirochete described), in its large variable diameter (0.4-3.0 microns), cytoplasmic granules, and spherical (round) bodies with composite structure. This resemblance permits its tentative identification as a Sippewissett strain of Spirosymplokos deltaeiberi. Microbial mats samples collected in sterile Petri dishes and stored dry for more than four years yielded many organisms upon rewetting, including small unidentified spirochetes in at least 4 out of 100 enrichments.

  8. Highly conductive and flexible nylon-6 nonwoven fiber mats formed using tungsten atomic layer deposition.

    Science.gov (United States)

    Kalanyan, Berç; Oldham, Christopher J; Sweet, William J; Parsons, Gregory N

    2013-06-12

    Low-temperature vapor-phase tungsten atomic layer deposition (ALD) using WF6 and dilute silane (SiH4, 2% in Ar) can yield highly conductive coatings on nylon-6 microfiber mats, producing flexible and supple nonwovens with conductivity of ∼1000 S/cm. We find that an alumina nucleation layer, reactant exposure, and deposition temperature all influence the rate of W mass uptake on 3D fibers, and film growth rate is calibrated using high surface area anodic aluminum oxide. Transmission electron microscopy (TEM) reveals highly conformal tungsten coatings on nylon fibers with complex "winged" cross-section. Using reactant gas "hold" sequences during the ALD process, we conclude that reactant species can transport readily to reactive sites throughout the fiber mat, consistent with conformal uniform coverage observed by TEM. The conductivity of 1000 S/cm for the W-coated nylon is much larger than found in other conductive nonwovens. We also find that the nylon mats maintain 90% of their conductivity after being flexed around cylinders with radii as small as 0.3 cm. Metal ALD coatings on nonwovens make possible the solvent-free functionalization of textiles for electronic applications.

  9. Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermalhot springs.

    Science.gov (United States)

    Aguilera, Angeles; Souza-Egipsy, Virginia; González-Toril, Elena; Rendueles, Olaya; Amils, Ricardo

    2010-03-01

    The composition of the eukaryotic community and the three-dimensional structure of diverse phototrophic microbial mats from two hot springs in Iceland (Seltun and Hveradalir geothermal areas) were explored by comparing eukaryotic assemblages from microbial mats. Samples were collected in July 2007 from 15 sampling stations along thermal and pH gradients following both hot springs. Physicochemical data revealed high variability in terms of pH (ranging from 2.8 to 7), with high concentrations of heavy metals, including up to 20 g Fe/l, 80 mg Zn/l, 117 mg Cu/l, and 39 mg Ni/l at the most acidic sampling points. Phylogenetic analysis of 18S rDNA genes revealed a diversity of sequences related to several taxa, including members of the Bacillariophyta, Chlorophyta, Rhodophyta, and Euglenophyta phyla as well as ciliates, amoebae, and stramenopiles. The closest relatives to some of the sequences detected came from acidophilic organisms, even when the samples were collected at circumneutral water locations. Electron microscopy showed that most of the microecosystems analyzed were organized as phototrophic microbial mats in which filamentous cyanobacteria usually appeared as a major component. Deposits of amorphous minerals rich in silica, iron, and aluminium around the filaments were frequently detected.

  10. Elimination of marker genes from transgenic plants using MAT vector systems.

    Science.gov (United States)

    Ebinuma, Hiroyasu; Sugita, Koichi; Endo, Saori; Matsunaga, Etsuko; Yamada, Keiko

    2005-01-01

    We have developed an efficient system (Multi-Auto-Transformation [MAT] vectors) for the removal of marker genes and to increase the regeneration frequency of transgenic crops without using antibiotic selection, reducing their possible environmental impact. The MAT vector system is designed to use the oncogenes (ipt, iaaM/H, rol) of Agrobacterium, which control the endogenous levels of plant hormones and the cell responses to plant growth regulators, to differentiate transgenic cells, and to select marker-free transgenic plants. The oncogenes are combined with the site-specific recombination system (R/RS). At transformation, the oncogenes regenerate transgenic plants and then are removed by the R/RS system to generate marker-free transgenic plants. The choice of a promoter for the oncogenes and the recombinase (R) gene, the state of plant materials and the tissue culture conditions greatly affect efficiency of both the regeneration of transgenic plants and the generation of marker-free plants. We have evaluated these conditions in several plant species to increase their generation efficiency. This chapter describes our transformation protocols using MAT vectors.

  11. Biocidal Activity of Plasma Modified Electrospun Polysulfone Mats Functionalized with Polyethyleneimine-Capped Silver Nanoparticles

    KAUST Repository

    Schiffman, Jessica D.

    2011-11-01

    The incorporation of silver nanoparticles (AgNPs) into polymeric nanofibers has attracted a great deal of attention due to the strong antimicrobial activity that the resulting fibers exhibit. However, bactericidal efficacy of AgNP-coated electrospun fibrous mats has not yet been demonstrated. In this study, polysulfone (PSf) fibers were electrospun and surface-modified using an oxygen plasma treatment, which allowed for facile irreversible deposition of cationically charged polyethyleneimine (PEI)-AgNPs via electrostatic interactions. The PSf-AgNP mats were characterized for relative silver concentration as a function of plasma treatment time using ICP-MS and changes in contact angle. Plasma treatment of 60 s was the shortest time required for maximum loss of bacteria (Escherichia coli) viability. Time-dependent bacterial cytotoxicity studies indicate that the optimized PSf-AgNP mats exhibit a high level of inactivation against both Gram negative bacteria, Escherichia coli, and Gram positive bacteria, Bacillus anthracis and Staphylococcus aureus. © 2011 American Chemical Society.

  12. Multibeam Sonar Mapping and Modeling of a Submerged Bryophyte Mat in Crater Lake, Oregon

    Science.gov (United States)

    Dartnell, Peter; Collier, Robert; Buktenica, Mark; Jessup, Steven; Girdner, Scott; Triezenberg, Peter

    2008-01-01

    Traditionally, multibeam data have been used to map sea floor or lake floor morphology as well as the distribution of surficial facies in order to characterize the geologic component of benthic habitats. In addition to using multibeam data for geologic studies, we want to determine if these data can also be used directly to map the distribution of biota. Multibeam bathymetry and acoustic backscatter data collected in Crater Lake, Oregon, in 2000 are used to map the distribution of a deep-water bryophyte mat, which will be extremely useful for understanding the overall ecology of the lake. To map the bryophyte's distribution, depth range, acoustic backscatter intensity, and derived bathymetric index grids are used as inputs into a hierarchical decision-tree classification model. Observations of the bryophyte mat from over 23 line kilometers of lake-floor video collected in the summer of 2006 are used as controls for the model. The resulting map matches well with ground-truth information and shows that the bryophyte mat covers most of the platform surrounding Wizard Island as well as on outcrops around the caldera wall.

  13. Tracking the Effect of Algal Mats on Coral Bleaching Using Remote Sensing

    Science.gov (United States)

    El-Askary, H. M.; Johnson, S. H.; Idris, N.; Qurban, M. A. B.

    2014-12-01

    Benthic habitats rely on relatively stable environmental conditions for survival. The introduction of algal mats into an ecosystem can have a notable effect on the livelihood of organisms such as coral reefs by causing changes in the biogeochemistry of the surrounding water. Increasing levels of acidity and new competition for sunlight caused by congregations of cyanobacteria essentially starve coral reefs of natural resources. These changes are particularly prevalent in waters near quickly developing population centers, such as the ecologically diverse Arabian Gulf. While ground-truthing studies to determine the extensiveness of coral death proves useful on a microcosmic level, new ventures in remote sensing research allow scientists to utilize satellite data to track these changes on a broader scale. Satellite images acquired from Landsat 5, 1987, Landsat 7, 2000, and Landsat 8, 2013 along with higher resolution IKONOS data are digitally analyzed in order to create spectral libraries for relevant benthic types, which in turn can be used to perform supervised classifications and change detection analyses over a larger area. The supervised classifications performed over the three scenes show five significant marine-related classes, namely coral, mangroves, macro-algae, and seagrass, in different degrees of abundance, yet here we focus only on the algal mats impact on corals bleaching. The change detection analysis is introduced to study see the degree of algal mats impact on coral bleaching over the course of time with possible connection to the local meteorology and current climate scenarios.

  14. Oxygen-Dependent Morphogenesis of Modern Clumped Photosynthetic Mats and Implications for the Archean Stromatolite Record

    Directory of Open Access Journals (Sweden)

    Malcolm R. Walter

    2012-10-01

    Full Text Available Some modern filamentous oxygenic photosynthetic bacteria (cyanobacteria form macroscopic tufts, laminated cones and ridges that are very similar to some Archean and Proterozoic stromatolites. However, it remains unclear whether microbes that constructed Archean clumps, tufts, cones and ridges also produced oxygen. Here, we address this question by examining the physiology of cyanobacterial clumps, aggregates ~0.5 mm in diameter that initiate the growth of modern mm- and cm-scale cones. Clumps contain more particulate organic carbon in the form of denser, bowed and bent cyanobacterial filaments, abandoned sheaths and non-cyanobacterial cells relative to the surrounding areas. Increasing concentrations of oxygen in the solution enhance the bending of filaments and the persistence of clumps by reducing the lateral migration of filaments away from clumps. Clumped mats in oxic media also release less glycolate, a soluble photorespiration product, and retain a larger pool of carbon in the mat. Clumping thus benefits filamentous mat builders whose incorporation of inorganic carbon is sensitive to oxygen. The morphogenetic sequence of mm-scale clumps, reticulate ridges and conical stromatolites from the 2.7 Ga Tumbiana Formation likely records similar O2-dependent behaviors, preserving currently the oldest morphological signature of oxygenated environments on Early Earth.

  15. Vertical differences in species turnover and diversity of amphipod assemblages associated with coralline mats

    Science.gov (United States)

    Bueno, M.; Tanaka, M. O.; Flores, A. A. V.; Leite, F. P. P.

    2016-11-01

    Environmental gradients are common in rocky shore habitats and may determine species spatial distributions at different scales. In this study, we tested whether environmental filtering affects amphipod assemblages inhabiting coralline algal mats at different vertical heights in southeastern Brazil. Samples obtained from the upper and lower zones of the infralittoral fringe were used to estimate mat descriptors (algal mass, sediment retention, organic matter contents, grain size and sediment sorting) and describe amphipod assemblages (abundance, species richness and diversity indices). Coralline algal mats and amphipod assemblages were similar between intertidal zones in several aspects. However, a more variable retention of sediment (positively related to algal mass), together with the accumulation of larger grains lower on the shore, likely provide higher habitat heterogeneity that hosts generally more diverse (both α- and β-diversity, as well as higher species turnover) amphipod assemblages in the lower intertidal zone. Poorer assemblages in the upper intertidal zone are dominated by omnivores, while carnivorous species are more often found in richer assemblages in the lower intertidal zone, as predicted by traditional niche theory.

  16. Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential.

    Science.gov (United States)

    White, Richard Allen; Power, Ian M; Dipple, Gregory M; Southam, Gordon; Suttle, Curtis A

    2015-01-01

    Within the subarctic climate of Clinton Creek, Yukon, Canada, lies an abandoned and flooded open-pit asbestos mine that harbors rapidly growing microbialites. To understand their formation we completed a metagenomic community profile of the microbialites and their surrounding sediments. Assembled metagenomic data revealed that bacteria within the phylum Proteobacteria numerically dominated this system, although the relative abundances of taxa within the phylum varied among environments. Bacteria belonging to Alphaproteobacteria and Gammaproteobacteria were dominant in the microbialites and sediments, respectively. The microbialites were also home to many other groups associated with microbialite formation including filamentous cyanobacteria and dissimilatory sulfate-reducing Deltaproteobacteria, consistent with the idea of a shared global microbialite microbiome. Other members were present that are typically not associated with microbialites including Gemmatimonadetes and iron-oxidizing Betaproteobacteria, which participate in carbon metabolism and iron cycling. Compared to the sediments, the microbialite microbiome has significantly more genes associated with photosynthetic processes (e.g., photosystem II reaction centers, carotenoid, and chlorophyll biosynthesis) and carbon fixation (e.g., CO dehydrogenase). The Clinton Creek microbialite communities had strikingly similar functional potentials to non-lithifying microbial mats from the Canadian High Arctic and Antarctica, but are functionally distinct, from non-lithifying mats or biofilms from Yellowstone. Clinton Creek microbialites also share metabolic genes (R (2) Mexico, but are more similar to polar Arctic mats (R (2) > 0.900). These metagenomic profiles from an anthropogenic microbialite-forming ecosystem provide context to microbialite formation on a human-relevant timescale.

  17. Mating Type Gene (MAT) and Itraconazole Susceptibility of Trichophyton tonsurans Strains Isolated in Japan.

    Science.gov (United States)

    Hiruma, Junichiro; Okubo, Miki; Kano, Rui; Kumagawa, Mai; Hiruma, Masataro; Hasegawa, Atsuhiko; Kamata, Hiroshi; Tsuboi, Ryoji

    2016-06-01

    Infection by Trichophyton tonsurans is an emerging fungal epidemic in Japan. Itraconazole (ITZ) and terbinafine have been used for the treatment of this infection for 15 years. However, patients with T. tonsurans infections have been shown to remain uncured or to become reinfected, suggesting that subclinical infection or polyphyletic strains and/or antifungal drug-resistant strains might be occurring in Japan. In this study, PCR analysis was performed to confirm the presence of the mating type locus MAT in genomic DNA from 60 Japanese clinical isolates of T. tonsurans, and to assess the previously postulated clonal origin of clinical isolates of this species. Antifungal susceptibility testing on isolates also was performed to confirm the absence of strains resistant to ITZ. PCR analysis proved that all 60 strains contained the MAT1-1 allele, while none contained the MAT1-2 allele. As determined by E-test, the mean MIC of ITZ in the 60 strains was 0.023 mg/L (range 0.002-0.125 mg/L). All strains of T. tonsurans isolated in Japan were clonal and were not resistant to ITZ. Therefore, dermatophytosis due to T. tonsurans is expected to respond to ITZ, since clinical isolates of T. tonsurans tested to date have been susceptible to this antifungal. This infection is proliferating as a subclinical infection in Japan.

  18. Use of Lightweight Cellular Mats to Reduce the Settlement of Structure on Soft Soil

    Science.gov (United States)

    Ganasan, R.; Lim, A. J. M. S.; Wijeyesekera, D. C.

    2016-07-01

    Construction of structures on soft soils gives rise to some difficulties in Malaysia and other country especially in settlement both in short and long term. The focus of this research is to minimize the differential and non-uniform settlement on peat soil with the use of an innovative cellular mat. The behaviour and performance of the lightweight geo-material (in block form) is critically investigated and in particular the use as a fill in embankment on soft ground. Hemic peat soil, sponge and innovative cellular mat will be used as the main material in this study. The monitoring in settlement behavior from this part of research will be done as laboratory testing only. The uneven settlement in this problem was uniquely monitored photographically using spot markers. In the end of the research, it is seen that the innovative cellular mat has reduce the excessive and differential settlement up to 50% compare to flexible and rigid foundations. This had improve the stiffness of soils as well as the porous contain in cellular structure which help in allowing water/moisture to flow through in or out thus resulting in prevent the condition of floating.

  19. Functional fiber mats with tunable diffuse reflectance composed of electrospun VO2/PVP composite fibers.

    Science.gov (United States)

    Li, Shaotang; Li, Yamei; Qian, Kun; Ji, Shidong; Luo, Hongjie; Gao, Yanfeng; Jin, Ping

    2014-01-01

    Thermochromic VO2 nanoparticles have been dispersed into polyvinyl pyrrolidone (PVP) fibers by electrospinning of a VO2-PVP blend solution. The structure and optical properties of the obtained composite fiber mat were studied by X-ray diffraction (XRD), scanning electron microscopy (SEM), ultraviolet-visible (UV-Vis) spectrophotometry, and Fourier transform infrared (FT-IR) spectroscopy. The fiber mat revealed two diffuse reflectance states in infrared spectral region at temperatures under and above the phase transition temperature of VO2 and its IR reflectance is smaller in high temperature. The difference of diffuse reflectance between the two states (ΔRdif) was obvious to be more than 25% in the wavelengths from 1.5 μm to 6 μm. The diffuse reflectance of the fiber mat could be controlled by adjusting the diameter of the fiber or the content of VO2 in the fibers and this particular optical property was explained by a multiple scattering-absorbing process.

  20. The effectiveness of the 4MAT teaching model upon student achievement and attitude levels

    Directory of Open Access Journals (Sweden)

    Uyangör, Sevinç Mert

    2012-01-01

    Full Text Available 4MAT is an 8-step, sequential instructional model based on two theoretical constructs: Kolb's model of learning styles and the concept of brain hemisphericity. The model, developed by B. McCarthy (1987 is derived by interacting each of Kolb's four quadrants with both left and right brain. The purpose of this study is to examine the influence of the 4MAT teaching model which depends on learning styles that have been generated by the help of the relationship between the brain and learning; and focuses on the learning loop as a centre upon students’ level of mathematics course achievement; and the level of attitudes towards mathematics in the unit of the Hoop and Circle. An experimental pattern model with a pre-test, post-test control group has been used in this research. The sample of this study comprised 81 students from the 7th grade at Public School in Balıkesir during the 2009-2010 education periods. It has been determined that 4MAT method of instruction was more efficient than the traditional method.

  1. Post-eruption colonization and community succession of hydrothermal microbial mats

    Science.gov (United States)

    Moyer, C. L.; Hager, K. W.; Fullerton, H.

    2015-12-01

    T-RFLP fingerprint cluster analysis and qPCR of microbial mat communities from hydrothermal vent habitats among recent post-eruption sites exhibit similar communities containing Epsilonproteobacteria that are phylogenetically similar and capable of hydrogen-oxidation (e.g., Nitratiruptor, Caminibacter, Nautilia, Thioreductor, and/or Lebetimonas). This community is the first (Group I) of three community types that represent different stages in the transition from vapor-dominated to brine-dominated water-rock interactions (i.e., vent effluent geochemistry). We have now observed this similar transition from four hydrothermal regions from across the Pacific Ocean. The second type of mat community (Group II) that has been observed is characterized by the presence of another group of Epsilonproteobacteria; however, these are mostly sulfur-oxidizing phylotypes (e.g., Sulfurimonas, Sulfurovum, and/or Sulfuricurvum). Finally, once the transition from sulfur to iron is complete, then the third type (Group III) cluster together by the presence of Zetaproteobacteria, which are known to use iron-oxidation. Each of these community types are dominated by groups of microorganisms characterized by cultured isolates, all of which are strict chemolithoautotrophs capable of carbon fixation and are hypothesized as both ecosystem engineers and primary producers in these energy-rich ecosystems. We also consider the thermodynamic implications towards carbon fixation for each of the three groups of mat communities.

  2. LHCb Scintillating Fibre Tracker Engineering Design Review Report: Fibres, Mats and Modules

    CERN Document Server

    Joram, Christian; Leverington, Blake Dean; Kirn, Thomas; Bachmann, Sebastian; Ekelhof, Robert Jan; Müller, Janine

    2015-01-01

    During the Long Shutdown 2 of the LHC, the LHCb collaboration will replace the current Outer and Inner Tracker by a single tracking detector, based on 2.42m long scintillating fibres with a diameter of 250 $\\mu$m, readout by silicon photo-multipliers (SiPM). The fibers are arranged in mats of 6 fibre-layers with a width of 130.65 mm. Eight fibre mats will form a module and are sandwiched between honeycomb and carbon fibre composite panels to provide stability and support over the module length of 4.85m. At either end of the module are the interfaces to the SiPMs and the front-end electronics. The active detection area of the Scintillating Fiber Tracker (SciFi) of 360m$^2$ will comprise 144 single modules arranged in 12 detection planes. This document summarizes the engineering design of the fibre mats and of the modules including the interfaces to the SiPMs and the mounting to the detector frames. Mechanical and detector properties of several prototype modules are discussed. The production procedure of the fi...

  3. Dynamical analysis of innovative core designs facing unprotected transients with the MAT5 DYN code

    Energy Technology Data Exchange (ETDEWEB)

    Darmet, G.; Massara, S. [EDF R and D, 1 avenue du general de Gaulle, 92140 Clamart (France)

    2012-07-01

    Since 2007, advanced Sodium-cooled Fast Reactors (SFR) are investigated by CEA, AREVA and EDF in the framework of a joint French collaboration. A prototype called ASTRID, sets out to demonstrate progress made in SFR technology, is due to operate in the years 2020's. The modeling of unprotected transients by computer codes is one of the key safety issues in the design approach to such SFR systems. For that purpose, the activity on CATHARE, which is the reference code for the transient analysis of ASTRID, has been strengthened during last years by CEA. In the meantime, EDF has developed a simplified and multi-channel code, named MAT5 DYN, to analyze and validate innovative core designs facing protected and unprotected transients. First, the paper consists in a description of MAT5 DYN: a code based on the existing code MAT4 DYN including major improvements on geometry description and physical modeling. Second, two core designs based on the CFV core design developed at CEA are presented. Then, the dynamic response of those heterogeneous cores is analyzed during unprotected loss of flow (ULOF) transient and unprotected transient of power (UTOP). The results highlight the importance of the low void core effect specific to the CFV design. Such an effect, when combined with a sufficient primary pump halving time and an optimized cooling group scheme, allows to delay (or, possibly, avoid) the sodium boiling onset during ULOF accidents. (authors)

  4. A class of Matérn-like covariance functions for smooth processes on a sphere

    KAUST Repository

    Jeong, Jaehong

    2015-02-01

    © 2014 Elsevier Ltd. There have been noticeable advancements in developing parametric covariance models for spatial and spatio-temporal data with various applications to environmental problems. However, literature on covariance models for processes defined on the surface of a sphere with great circle distance as a distance metric is still sparse, due to its mathematical difficulties. It is known that the popular Matérn covariance function, with smoothness parameter greater than 0.5, is not valid for processes on the surface of a sphere with great circle distance. We introduce an approach to produce Matérn-like covariance functions for smooth processes on the surface of a sphere that are valid with great circle distance. The resulting model is isotropic and positive definite on the surface of a sphere with great circle distance, with a natural extension for nonstationarity case. We present extensive numerical comparisons of our model, with a Matérn covariance model using great circle distance as well as chordal distance. We apply our new covariance model class to sea level pressure data, known to be smooth compared to other climate variables, from the CMIP5 climate model outputs.

  5. Incorporation of Vanadium Oxide in Silica Nanofiber Mats via Electrospinning and Sol-Gel Synthesis

    Directory of Open Access Journals (Sweden)

    Jeanne E. Panels

    2006-01-01

    Full Text Available Submicron scale vanadia/silica hybrid nanofiber mats have been produced by electrospinning silica sol-gel precursor containing vanadium oxytriisopropoxide (VOTIP, followed by calcinations at high temperature. The properties of the resulting inorganic hybrid nanofiber mats are compared to those of electrospun pure silica nanofibers. SEM images show fibers are submicron in diameter and their morphology is maintained after calcination. Physisorption experiments reveal that silica nanofiber mats have a high specific surface area of 63 m2/g. FT-IR spectra exhibit Si—O vibrations and indicate the presence of V2O5 in the fibers. XPS studies reveal that the ratio of Si to O is close to 0.5 on the surface of fibers and the amount of vanadium on the surface of fibers increases with calcination. XRD diffraction patterns show that silica nanofibers are amorphous and orthorhombic V2O5 crystals have formed after calcination. EFTEM images demonstrate the growth of crystals on the surface of fibers containing vanadium after calcination. SEM images of fibers with high-vanadium content (50 mol% V: Si show that vanadia crystals are mostly aligned along the fiber axis. XPS shows an increase in vanadium contents at the surface, and XRD patterns exhibit an increase in the degree of crystallinity. A coaxial electrospinning scheme has successfully been employed to selectively place V2O5 in the skin layer.

  6. Superhydrophobic PVDF and PVDF-HFP nanofibrous mats with antibacterial and anti-biofouling properties

    Energy Technology Data Exchange (ETDEWEB)

    Spasova, M.; Manolova, N. [Laboratory of Bioactive Polymers, Institute of Polymers, Bulgarian Academy of Sciences, Acad. G. Bonchev St, bl. 103A, BG-1113 Sofia (Bulgaria); Markova, N. [Institute of Microbiology, Bulgarian Academy of Sciences, Acad. G. Bonchev St, bl. 26, BG-1113 Sofia (Bulgaria); Rashkov, I., E-mail: rashkov@polymer.bas.bg [Laboratory of Bioactive Polymers, Institute of Polymers, Bulgarian Academy of Sciences, Acad. G. Bonchev St, bl. 103A, BG-1113 Sofia (Bulgaria)

    2016-02-15

    Graphical abstract: - Highlights: • New PVDF and PVDF-HFP nanofibers decorated with ZnO nanoparticles and a model drug. • The nanofibrous materials were fabricated by one-pot electrospinning. • The obtained materials are superhybrophobic and possess antibacterial properties. - Abstract: Superhydrophobic nanofibrous materials of poly(vinylidene fluoride) (PVDF) and poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-HFP) were prepared by one-pot electrospinning technique. The mats were decorated with ZnO nanoparticles with silanized surface and a model drug – 5-chloro-8-hydroxyquinolinol (5Cl8HQ). The obtained hybrid nanofibrous materials were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), contact angle measurements, mechanical and microbiological tests. The results showed that the incorporation of ZnO nanoparticles into PVDF and PVDF-HFP nanofibers increased the hydrophobicity (contact angle 152°), improved the thermal stability and imparted to the nanofibrous materials anti-adhesive and antimicrobial properties. The mats containing the model drug possessed antibacterial activity against Escherichia coli and Staphylococcus aureus. The results suggested that the obtained hybrid mats could find potential biomedical applications requiring antibacterial and anti-biofouling properties.

  7. Electrospinning strategies of drug-incorporated nanofibrous mats for wound recovery.

    Science.gov (United States)

    Choi, Ji Suk; Kim, Hye Sung; Yoo, Hyuk Sang

    2015-04-01

    Electrospun nanofibrous mats have recently been employed as drug reservoirs for their unique features, such as high surface-to-volume ratios and easy fabrication process. We describe herein various methods of fabricating drug- and gene-encapsulated nanofibrous meshes, which can be prepared by electrospinning. The electrospinning process of nanofibrous mats is affected by many parameters, including viscosity and ejection speeds of the polymeric solutions and the electrical potential applied to the system. Both single- and dual-nozzle systems are widely employed in the preparation of electrospun nanofibers encapsulating drugs and genes, which are usually incorporated into the electrospun mats either by physical mixing with polymeric solutions before electrospinning or by physical incorporation after electrospinning. Various strategies have been tailored to maintain the bioactivity of proteins for tissue regeneration before and after electrospinning. Nucleic acids, such as DNA and siRNA, are also incorporated into nanofibrous meshes to enhance tissue regeneration by expressing transgenes or silencing domestic genes in specific tissues. Drug- or gene-incorporated nanofibrous meshes can greatly increase tissue regeneration rates and reduce scar formation in normal and diabetic wounds. Hybrid nanofibers, with multiple cell layers or hydrogels, have also been used to improve wound healing efficiency by increasing cell infiltration.

  8. Archaeal populations in hypersaline sediments underlying orange microbial mats in the Napoli mud volcano.

    Science.gov (United States)

    Lazar, Cassandre Sara; L'haridon, Stéphane; Pignet, Patricia; Toffin, Laurent

    2011-05-01

    Microbial mats in marine cold seeps are known to be associated with ascending sulfide- and methane-rich fluids. Hence, they could be visible indicators of anaerobic oxidation of methane (AOM) and methane cycling processes in underlying sediments. The Napoli mud volcano is situated in the Olimpi Area that lies on saline deposits; from there, brine fluids migrate upward to the seafloor. Sediments associated with a brine pool and microbial orange mats of the Napoli mud volcano were recovered during the Medeco cruise. Based on analysis of RNA-derived sequences, the "active" archaeal community was composed of many uncultured lineages, such as rice cluster V or marine benthic group D. Function methyl coenzyme M reductase (mcrA) genes were affiliated with the anaerobic methanotrophic Archaea (ANME) of the ANME-1, ANME-2a, and ANME-2c groups, suggesting that AOM occurred in these sediment layers. Enrichment cultures showed the presence of viable marine methylotrophic Methanococcoides in shallow sediment layers. Thus, the archaeal community diversity seems to show that active methane cycling took place in the hypersaline microbial mat-associated sediments of the Napoli mud volcano.

  9. INK128 exhibits synergy with azoles against Exophiala spp. and Fusarium spp.

    Directory of Open Access Journals (Sweden)

    Lujuan Gao

    2016-10-01

    Full Text Available Infections of Exophiala spp. and Fusarium spp. are often chronic and recalcitrant. Systemic disseminations, which mostly occur in immunocompromised patients, are often refractory to available antifungal therapies. The conserved target of rapamycin (TOR orchestrates cell growth and proliferation in response to nutrients and growth factors, which are important for pathogenicity and virulence. INK128 is a second-generation ATP-competitive TOR inhibitor, which binds the TOR catalytic domain and selectively inhibits TOR. In the present study, we investigated the in vitro activities of INK128 alone and the interactions of INK128 with conventional antifungal drugs including itraconazole, voriconazole, posaconazole, and amphotericin B against 18 strains of Exophiala spp. and 10 strains of Fusarium spp. via broth microdilution checkerboard technique system adapted from clinical and Laboratory Standards Institute broth microdilution method M38-A2. INK128 alone was inactive against all isolates tested. However, favorable synergistic effects between INK128 and voriconazole were observed in 61% Exophiala strains and 60% Fusarium strains, despite Fusarium strains exhibited high MIC values (4-8 μg/ml against voriconazole. In addition, synergistic effects of INK128/itraconazole were shown in 33% Exophiala strains and 30% Fusarium strains, while synergy of INK128/posaconazole were observed in 28% Exophiala strains and 30% Fusarium strains. The effective working ranges of INK128 were 0.125-2 μg/ml and 1-4μg/ml against Exophiala isolates and Fusarium isolates, respectively. No synergistic effect was observed when INK128 was combined with amphotericin B. No antagonism was observed in all combinations. In conclusion, INK128 could enhance the in vitro antifungal activity of voriconazole, itraconazole and posaconazole against Exophiala spp. and Fusarium spp., suggesting that azoles, especially voriconazole, combined with TOR kinase inhibitor might provide a

  10. Avasõnad / Mats Estonius, Toomas Hendrik Ilves, Eduardo Ibáñes, Uffe A. Baslev

    Index Scriptorium Estoniae

    2010-01-01

    Konverentsi avasõnad laususid Tallinna Ülikooli prorektor Mats Estonius, Eesti Vabariigi president Toomas Hendrik Ilves, Hispaania Kuningriigi suursaadik Eestis Eduardo Ibáñes, Taani Kuningriigi suursaadik Eestis Uffe A. Baslev

  11. Tunable Structures and Properties of Electrospun Regenerated Silk Fibroin Mats Annealed in Water Vapor at Different Times and Temperatures

    Directory of Open Access Journals (Sweden)

    Xiangyu Huang

    2014-01-01

    Full Text Available Regenerated silk fibroin (SF mats were fabricated using electrospinning technique, followed by mild water vapor annealing to effectively tune the structures and improve the mechanical properties of the mats at different annealing times and temperatures. The breaking strength and the breaking energy of the mats treated with water vapor at 65°C for 12 h reached 6.0 MPa and 171.7 J/kg, respectively. The conformational transition of the SF mats was significantly influenced by the treating temperature, while the influence of time was comparatively limited. The influence is consistent with the time-temperature equivalent principle and would be helpful for the preparation of water-vapor-annealed silk-based biomaterials for various applications.

  12. Emergence of blaCTX-M-15 Gene and Its Transferability in Enterobacter spp. Isolated From the Hospitals of Tehran, Iran

    Directory of Open Access Journals (Sweden)

    Salimian Rizi

    2015-08-01

    Full Text Available Background Enterobacter spp. is increasingly recognized as an important nosocomial pathogen and implicated in many episodes of hospital acquired infections. Objectives The current study aimed to describe distribution and transferability of blaCTX-M-15 gene, and the antibiotic susceptibility pattern in the clinical isolates of Enterobacter spp. Materials and Methods A total of 110 Enterobacter isolates were collected from five hospitals in Tehran, Iran from May 2012 to April 2013. Enterobacter species were identified by API 20E system. Antibacterial susceptibility was determined by disk diffusion method, and extended spectrum beta lactamase (ESBL production was confirmed by combined disk method. The blaCTX-M-15 gene was identified by PCR with specific primers. The transferability of the blaCTX-M-15was tested by conjugation with broth matting method. Results The prevalence of Enterobacter species was E. cloacae (78.2 %, E. aerogenes (6.13 % and E. sakazakii (8.2%. They were from different clinical sources. Maximal resistance in Enterobacter isolates was noticed against Augmentin®, trimethoprim - sulfamethoxazole and cefoxitin 75.5%, 64.5%, and 59.1%, respectively. Fourteen isolates, showed ESBL phenotype. The blaCTX-M-15 gene frequency in Enterobacter isolates was 11.8%. Three conjugative plasmids containing blaCTX-M-15 were found in one Enterobacter isolate. Conclusions It was the first report on the blaCTX-M-15 gene emergence in clinical Enterobacter spp. in Iran. The current study demonstrated the predominant presence of the gene encoding CTX-M-15 among ESBL producing Enterobacter spp. commonly with a large plasmid, in the setting.

  13. MatVPC: A User-Friendly MATLAB-Based Tool for the Simulation and Evaluation of Systems Pharmacology Models.

    Science.gov (United States)

    Biliouris, K; Lavielle, M; Trame, M N

    2015-09-01

    Quantitative systems pharmacology (QSP) models are progressively entering the arena of contemporary pharmacology. The efficient implementation and evaluation of complex QSP models necessitates the development of flexible computational tools that are built into QSP mainstream software. To this end, we present MatVPC, a versatile MATLAB-based tool that accommodates QSP models of any complexity level. MatVPC executes Monte Carlo simulations as well as automatic construction of visual predictive checks (VPCs) and quantified VPCs (QVPCs).

  14. Un lienzo de la Inmaculada de Matías de Torres en la Colegiata de Talavera de la Reina

    Directory of Open Access Journals (Sweden)

    Nicolau Castro, Juan

    2014-03-01

    Full Text Available The unpublished painting of the Immaculate Conception in the Collegiate Church of Talavera de la Reina can be attributed to the 17th century artist Matías de Torres.Un lienzo de la Inmaculada en la Colegiata de Talavera de la Reina, hasta ahora inédito, puede ser atribuido al pintor del siglo XVII Matías de Torres.

  15. Timescales of Growth Response of Microbial Mats to Environmental Change in an Ice-Covered Antarctic Lake

    Directory of Open Access Journals (Sweden)

    Anne D. Jungblut

    2013-01-01

    Full Text Available Lake Vanda is a perennially ice-covered, closed-basin lake in the McMurdo Dry Valleys, Antarctica. Laminated photosynthetic microbial mats cover the floor of the lake from below the ice cover to >40 m depth. In recent decades, the water level of Lake Vanda has been rising, creating a “natural experiment” on development of mat communities on newly flooded substrates and the response of deeper mats to declining irradiance. Mats in recently flooded depths accumulate one lamina (~0.3 mm per year and accrue ~0.18 µg chlorophyll-a cm−2 y−1. As they increase in thickness, vertical zonation becomes evident, with the upper 2-4 laminae forming an orange-brown zone, rich in myxoxanthophyll and dominated by intertwined Leptolyngbya trichomes. Below this, up to six phycobilin-rich green/pink-pigmented laminae form a subsurface zone, inhabited by Leptolyngbya, Oscillatoria and Phormidium morphotypes. Laminae continued to increase in thickness for several years after burial, and PAM fluorometry indicated photosynthetic potential in all pigmented laminae. At depths that have been submerged for >40 years, mats showed similar internal zonation and formed complex pinnacle structures that were only beginning to appear in shallower mats. Chlorophyll-a did not change over time and these mats appear to represent resource-limited “climax” communities. Acclimation of microbial mats to changing environmental conditions is a slow process, and our data show how legacy effects of past change persist into the modern community structure.

  16. Distribution of Major Chlorogenic Acids and Related Compounds in Brazilian Green and Toasted Ilex paraguariensis (Maté) Leaves.

    Science.gov (United States)

    Lima, Juliana de Paula; Farah, Adriana; King, Benjamin; de Paulis, Tomas; Martin, Peter R

    2016-03-23

    Ilex paraguariensis (maté) is one of the best sources of chlorogenic acids (CGA) in nature. When leaves are toasted, some isomers are partly transformed into 1,5-γ-quinolactones (CGL). Both CGA and CGL are important contributors to the brew's flavor and are thought to contribute to human health. In this study, we quantified 9 CGA, 2 CGL, and caffeic acid in 20 samples of dried green and toasted maté that are commercially available in Brazil. Total CGA content in green maté varied from 8.7 to 13.2 g/100 g, dry weight (dw). Caffeic acid content varied from 10.8 to 13.5 mg/100 g dw, respectively. Content in toasted maté varied from 1.5 to 4.6 g/100 g and from 1.5 to 7.2 mg/100 g dw, respectively. Overall, caffeoylquinic acid isomers (CQA) were the most abundant CGA in both green and toasted maté, followed by dicaffeoylquinic acids (diCQA) and feruloylquinic acids (FQA). These classes accounted for 58.5%, 40.0%, and 1.5% of CGA, respectively, in green maté and 76.3%, 20.7%, and 3.0%, respectively, in toasted maté. Average contents of 3-caffeoylquinolactone (3-CQL) and 4-caffeoylquinolactone (4-CQL) in commercial toasted samples were 101.5 mg/100 g and 61.8 mg/100 g dw, respectively. These results show that, despite overall losses during the toasting process, CGA concentrations are still substantial in toasted leaves, compared to other food sources of CGA and phenolic compounds in general. In addition to evaluating commercial samples, investigation of changes in CGA profile and formation of 1,5-γ-quinolactones was performed in experimental maté toasting.

  17. Full-Scale Instrumented Evaluations of Multiple Airfield Matting Systems on Soft Soil to Characterize Permanent Deformation

    Science.gov (United States)

    2016-06-01

    and Structures Laboratory U.S. Army Engineer Research and Development Center 3909 Halls Ferry Road Vicksburg, MS 39180-6199 Final report...finite element implementation of the Mindlin plate solution (Mindlin 1951) for determining the unit section modulus ( (2)) of different...rigidity of each mat using the finite element implementation of the Mindlin plate solution. Data that included the mat panel dimensions, plate

  18. Environmental controls on photosynthetic microbial mat distribution and morphogenesis on a 3.42 Ga clastic-starved platform.

    Science.gov (United States)

    Tice, Michael M

    2009-12-01

    Three morphotypes of microbial mats are preserved in rocks deposited in shallow-water facies of the 3.42 Ga Buck Reef chert (BRC). Morphotype alpha consists of fine anastomosing and bifurcating carbonaceous laminations, which loosely drape underlying detrital grains or form silica-filled lenses. Morphotype beta consists of meshes of fine carbonaceous strands intergrown with detrital grains and dark laminations, which loosely drape coarse detrital grains. Morphotype gamma consists of fine, even carbonaceous laminations that tightly drape underlying detrital grains. Preservation of nearly uncompacted mat morphologies and detrital grains deposited during mat growth within a well-characterized sedimentary unit makes quantitative correlation between morphology and paleoenvironment possible. All mats are preserved in the shallowest-water interval of those rocks deposited below normal wave base and above storm wave base. This interval is bounded below by a transgressive lag formed during regional flooding and above by a small condensed section that marks a local relative sea-level maximum. Restriction of all mat morphotypes to the shallowest interval of the storm-active layer in the BRC ocean reinforces previous interpretations that these mats were constructed primarily by photosynthetic organisms. Morphotypes alpha and beta dominate the lower half of this interval and grew during deposition of relatively coarse detrital carbonaceous grains, while morphotype gamma dominates the upper half and grew during deposition of fine detrital carbonaceous grains. The observed mat distribution suggests that either light intensity or, more likely, small variations in ambient current energy acted as a first-order control on mat morphotype distribution. These results demonstrate significant environmental control on biological morphogenetic processes independent of influences from siliciclastic sedimentation.

  19. Metagenomic Assembly of the Dominant Zetaproteobacteria in an Iron-oxidizing Hydrothermal Microbial Mat

    Science.gov (United States)

    Moyer, C. L.; Fullerton, H.

    2013-12-01

    Iron is the fourth most abundant element in the Earth's crust and is potentially one of the most abundant energy sources on the earth as an electron donor for chemolithoautotrophic growth coupled to Fe(II) oxidation. Despite the rapid abiotic oxidation rate of iron, many microbes have adapted to feeding off this fleeting energy source. One such bacterial class is the Zetaproteobacteria. Iron-dominated microbial mat material was collected with a small-scale syringe sampler from Loihi Seamount, Hawaii. From this sample, gDNA was extracted and prepared for paired-end Illumina sequencing. Reconstruction of SSU rDNA genes using EMERGE allowed for comparison to previous SSU rDNA surveys. Clone libraries and qPCR show these microbial mats to be dominated by Zetaproteobacteria. Results from our in silico reconstruction confirm these initial findings. RDP classification of the EMERGE reconstructed sequences resulted in 44% of the community being identified as Zetaproteobacteria. The most abundant SSU rDNA has 99% similarity to Zeta OTU-2, and only a 94% similarity to M. ferrooxidans PV-1. Zeta OTU-2 has been shown to be the most cosmopolitan population in iron-dominated hydrothermal systems from across Pacific Ocean. Metagenomic assembly has resulted in many contigs with high identity to M. ferrooxidans as identified, by BLAST. However, with large differences in SSU rRNA similarity, M. ferrooxidans PV-1 is not an adequate reference. Current work is focusing on reconstruction of the dominant microbial mat member, without the use of a reference genome through an iterative assembly approach. The resulting 'pan-genome' will be compared to other Zetaproteobacteria (at the class level) and the functional ecology of this cosmopolitan microbial mat community member will be extrapolated. Thus far, we have detected multiple housekeeping genes involved in DNA replication, transcription and translation. The most abundant metabolic gene we have found is Aconitase, a key enzyme in the

  20. Survey on Dermatophytosis in Wrestlers and Its Relationship with Wrestling Mats in Hamedan

    Directory of Open Access Journals (Sweden)

    Reza Habibipour

    2012-08-01

    Full Text Available Background: This study examined the prevalence of Tinea gladiatorum as a superficial dermatophytosis in wrestlers of Hamedan and reviews this infection in the wrestling mats in terms of dermatophytic factors. Materials and Methods: This study was conducted (Oct. 2009 to the end of Sep. 2010 on 1,800 people in 10 wrestling halls. Samples of skin were collected from suspected wrestlers and evaluated via potassium hydroxide. Sterile carpet method (5×5 was also used for sampling from mats surfaces. Common mediums and methods in mycology were used to culture samples and detect grown fungi.Results44 individuals (2.4% of the wrestlers were diagnosed with ringworm. A mat (10% was infected with dermatophytes. Dermatophytic factor isolated from wrestlers and wrestling mats was Trichophyton tonsurans in all cases. Highest rate of infection in terms of weight was weight group above 90 kg, with infection rate of 5.4% and in terms of age, it was age group of 16-21 with infection rate of 2.6%. Most lesions were observed in the upper body areas in neck 21.3% and the least lesions were seen in the leg 8.2%. In this study, proportion z-test showed a significant difference between the infected and non-infected wrestlers with ringworm in terms of frequent contact of the lesion with the mat surface and recurrence (p>0.05. On the other hand, statistical z-test showed that there is no significant difference between the infected and non- infected wrestlers with Tinea gladiatorum in terms of domestic and foreign travel and for training or competition with rivals, the number of domestic and foreign travels, weight, age, type of bathing, wrestling type, the geographic location of wrestling hall and anatomic location of lesion (p>0.05.Conclusion: Rapid diagnosis and appropriate treatment of dermatophytic infection and observance of health issues of athletes to prevent reduction and interruption of the exercises and competitions are essential.

  1. Sulfur isotope systematics of microbial mats in shallow-sea hydrothermal vents, Milos Island, Greece

    Science.gov (United States)

    Gilhooly, W. P.; Fike, D. A.; Amend, J. P.; Price, R. E.; Druschel, G.

    2011-12-01

    Milos is an island arc volcano venting submarine magmatic fluids directly into overlying seawater. Our study sites are located in an extensive shallow-water hydrothermal vent field less than 200 m offshore of Paleochori Bay in 5 m water depth. The vent fluids are highly sulfidic (> 3mM), at high-temperature (50-115C), and acidic (pH 5). The seafloor vent features include large patches (> 1 m2) of white microbial mats, patches of yellow elemental sulfur, and sediments stained orange by arsenic sulfides. The microbial communities that populate the shallow-sea hydrothermal vents stand in stark contrast to other nearshore environments typically found at wave base and within the photic zone. We explore sulfur isotope patterns along sharp environmental gradients established between ambient seawater and the efflux of vent fluids in the effort to better understand resource exploitation by microbial mat communities living in extreme conditions. Pore water samples, push-cores, biofilms, and water column samples were collected by SCUBA along sampling transects radiating out from the center of white mats into background sediments. We analyzed these samples for δ34S of dissolved sulfate, sulfide, elemental sulfur, and mineral sulfides (iron monosulfides and pyrite). Free gas sulfides collected directly from vents had δ34S values ranging +2.1 to +2.8%. Pore water sulfide, collected from below white mats with δ34S values ranging +1.9 to +2.9%, was isotopically similar to free gas samples. High pore water sulfate concentrations (8-25 mM) coupled with 34S-enriched pore water sulfides are not geochemical signatures indicative of dissimilatory sulfate reduction (where δ34Ssulfide <<0%). The δ34S of pore water sulfates collected across one dive site show a mixing trend, ranging from +18% in the center, +20% mid-transect, and +21% in sediments outside of the mat. This trend may be caused by oxidation of vent sulfides by entrained seawater (δ34S = +21.2%). We continue to target

  2. Listeria spp. no processamento de lingüiça frescal em frigoríficos de Pelotas, RS, Brasil Listeria spp. in the processing of fresh sausages in slaughterhou ses from Pelotas, RS, Brazil

    Directory of Open Access Journals (Sweden)

    Wladimir Padilha da Silva

    2004-06-01

    Full Text Available Alimentos intensamente manipulados, como as lingüiças mistas do tipo frescal são freqüentemente responsáveis pela veiculação de enfermidades transmitidas por alimentos. Devido ao risco à saúde pública que a bactéria Listeria monocytogenes representa, este trabalho teve como objetivo estudar a presença de Listeria spp., em especial de L. monocytogenes, durante o processamento de lingüiças mistas do tipo frescal, em três frigoríficos com inspeção sanitária estadual, em Pelotas-RS. Para isso, analisou-se a matéria-prima utilizada no preparo da lingüiça, os equipamentos da linha de processamento e o produto final. Isolou-se Listeria spp. em 100% das 41 amostras analisadas, nos 3 estabelecimentos estudados. Dentre as diferentes espécies, L. innocua foi aquela isolada com maior freqüência, em 97,6% das amostras, seguida por L. monocytogenes em 29,3% e L. welshimeri em 24,4%. A presença destes microrganismos nas amostras analisadas, em especial no produto final, demonstra a necessidade de readequação nas práticas de limpeza e sanificação das plantas de processamento analisadas, bem como representa risco potencial de listeriose ao consumidor.Food that is highly manipulated, such as fresh sausages, is frequently responsible for spreading food borne diseases. Due to the threat that the bacterium Listeria monocytogenes represents to public health, the aim of this work was to study the presence of Listeria spp., especially Listeria monocytogenes, during processing of fresh sausages, in three slaughterhouses with state food inspection, in the city of Pelotas, Brazil. The raw material used for the sausage elaboration, the equipment used in the processing and the end products were analyzed. The results showed Listeria spp. in 100% of the 41 samples analyzed. Among the different species, L. innocua was the most frequent, isolated from 97.6% of the samples, followed by the L. monocytogenes and L. welshimeri that were isolated from

  3. Especificidade hospedeira de variantes Bradyrhizobium spp em soja (cvs peking e clark, caupi e guandu Host specificity of Bradyrhizobium spp mutants in soybean (cultivars peking and clark, cowpea and pigeon pea

    Directory of Open Access Journals (Sweden)

    Fabíola Gomes de Carvalho

    2008-12-01

    Full Text Available A expansão da cultura da soja evidenciou uma alta especificidade hospedeira, requerendo a pesquisa de novas estirpes que apresentassem capacidade de nodular a soja e bom potencial de competição com a população de rizóbios naturalizada nos solos. O objetivo deste trabalho foi avaliar a especificidade hospedeira de variantes isolados de estirpes de Bradyrhizobium spp quanto à nodulação e eficiência relativa de fixação de N2 atmosférico em soja (cvs peking e clark, caupi e guandu. O experimento foi realizado sob condições controladas em câmara de crescimento por meio de testes de variantes de B. japonicum e B. elkanii e suas respectivas estirpes originais quanto à habilidade de nodular soja, caupi e guandu. A colheita foi realizada aos 35 dias, sendo avaliada a nodulação (número, peso dos nódulos secos, produção de matéria seca na parte aérea, eficiência relativa de fixação de N2 atmosférico. Os variantes e estirpes de Bradyrhizobium spp nodularam Glycine max (cultivares BR-16, Clark e Peking, Vigna unguiculata e Cajanus cajan, contudo, apenas para Glycine max a interação rizóbio-leguminosa demonstrou eficiência simbiótica significativa.The expansion of the soybean crop has evidenced a high host specificity, indicating the requirement of new strains with capacity of nodulating soybean and competition capacity with the natural soil rhizobial population. The purpose of this study was to evaluate the host specificity of mutants isolated from Bradyrhizobium spp strains in relation to nodulation and relative N2 fixation effectiveness in soybean (cultivars Peking and Clark, cowpea and pigeon pea. The experiment was carried out under controlled conditions in a growth chamber, where B. japonicum and B. elkanii mutants and the respective original strains were tested for their nodulation ability on soybean, cowpea and pigeon pea. The crop was harvested 35 days after planting and the nodulation (number, dry nodule weight

  4. Preservation in microbial mats: mineralization by a talc-like phase of a fish embedded in a microbial sarcophagus

    Directory of Open Access Journals (Sweden)

    Miguel eIniesto

    2015-09-01

    Full Text Available Microbial mats have been repeatedly suggested to promote early fossilization of macroorganisms. Yet, experimental simulations of this process remain scarce. Here, we report results of 5 year-long experiments performed onfish carcasses to document the influence of microbial mats on mineral precipitation during early fossilization. Carcasses were initially placed on top of microbial mats. After two weeks, fishes became coated by the mats forming a compact sarcophagus, which modified the microenvironment close to the corpses. Our results showed that these conditions favoured the precipitation of a poorly crystalline silicate phase rich in magnesium. This talc-like mineral phase has been detected in three different locations within the carcasses placed in microbial mats for more than 4 years: 1 within inner tissues, colonized by several bacillary cells; 2 at the surface of bones of the upper face of the corpse buried in the mat; and 3 at the surface of several bones such as the dorsal fin which appeared to be gradually replaced by the Mg-silicate phase. This mineral phase has been previously shown to promote bacteria fossilization. Here we provide first experimental evidence that such Mg-rich phase can also be involved in exceptional preservation of animals.

  5. Experimental weed control of Najas marina ssp. intermedia and Elodea nuttallii in lakes using biodegradable jute matting

    Directory of Open Access Journals (Sweden)

    Markus A. Hoffmann

    2013-10-01

    Full Text Available The use of jute matting in managing the invasive aquatic macrophyte species Elodea nuttallii (Planch. H. St. John and Najas marina ssp. intermedia (Wolfg. ex Gorski Casper (Najas intermedia was studied in laboratory experiments and field trials. Four German lakes with predominant population of Najas intermedia or Elodea nuttalli were chosen for the experiment and areas between 150 and 300 m² were covered with jute textile. The effect of the matting on the growth of invasive and non-invasive macrophytes was determined through comparison with control transects. Biodegradable jute matting successfully suppressed the invasive macrophyte Najas intermedia and significantly reduced the growth of Elodea nuttalli in lakes. The results indicate that the capability of the matting to inhibit the growth of Elodea nuttallii and Najas intermedia depends on the mesh size of the jute weaving and that environmental conditions can affect its efficiency. Various indigenous species like Charales or Potamogeton pusillus L. were able to grow through the jute fabric and populate the treated areas. Until the end of the vegetation period, none of the invasive species were able to penetrate the covering and establish a stable population; in fact, in the subsequent year the jute matting affected only the spread of Najas intermedia. Jute matting proved to be an easy-to-use and cheap method to control the growth of Elodea nuttallii and Najas intermedia.

  6. Preparation of electrospun fiber mats using siloxane-containing vaterite and biodegradable polymer hybrids for bone regeneration.

    Science.gov (United States)

    Fujikura, Kie; Lin, Sen; Nakamura, Jin; Obata, Akiko; Kasuga, Toshihiro

    2013-11-01

    An electrospun fiber mat using a new composite consisting of siloxane-containing vaterite (SiV) and poly(lactic-co-glycolic acid) (PLGA) (denoted by SiPLGVH) was prepared with the aim of applying it as a membrane for use in a guided bone regeneration (GBR) system. Another electrospun fiber mat using a previously described composite consisting of SiV and poly(L-lactic acid) (denoted by SiPVH) was also prepared as a comparative sample. SiPLG VH fiber mats showed superior results in terms of mechanical tensile properties and cellular behavior. Their elongation before failure was about eight times higher than that of SiPVH. The numbers of osteoblast-like cells that proliferated on the SiPLGVH fiber mats, regardless of the hydroxyapatite coating, were comparable to that of SiPVH. The cells spread more, two dimensionally, on the SiPLGVH fiber mats, since the pores between fibers were narrowed down because of swelling of the PLGA matrix during cell culture. This two-dimensional cellular proliferation quality on the SiPLGVH fiber mats is expected to be suitable for materials used in GBR, leading to control of infiltration of the soft tissue and great tissue integration with the surrounding tissue.

  7. Optimization and characterization of poly(phthalazinone ether ketone) (PPEK) heat-resistant porous fiberous mat by electrospinning

    Science.gov (United States)

    Shi, R.; Bin, Y. Z.; Yang, W. X.; Wang, D.; Wang, J. Y.; Jian, X. G.

    2016-08-01

    Poly(phthalazinone ether ketone) (PPEK) is noted for its outstanding heat-resistance property and mechanical strength. A one-step electrospinning method was conducted to produce PPEK micro-nano porous fibrous mat. We gave emphasis study on the spinnability, optimized conditions, fibers' morphology, surface science and fracture mechanism. The uniform electrospun fibrous mat resulted from PPEK/chloroform binary system indicated that PPEK would be a prospective material to be applied in electrospinning. Addition of a small amount of non-solvent (ethanol) turned out to be advantageous to the reduction of fiber diameter and the alleviation of choking during spinning process. Organic salt (benzyltrimethylammonium chloride) was employed to increase the conductivity of solution for the formation of thin fiber. After trials, PPEK/chloroform/ethanol system with salt and PPEK/NMP system were taken as two optimized systems. These two systems showed different pore fraction in N2 adsorption test, and displayed different mechanical behaviors in uniaxial tension test. The fibrous mat from PPEK/chloroform/ethanol system showed a feature of ductile fracture with relatively low fracture strength but long fracture deformation, while the fibrous mat from PPEK/NMP system showed a feature of brittle fracture with small deformation but quite large fracture strength of ca. 6 MPa. Finally thermogravimetric analysis indicated that the resultant PPEK fibrous mat did not decompose until the temperature reached 478 °C, which qualified the resultant fibrous mat as a promising material used under high-temperature condition.

  8. Expansion rate and geometry of floating vegetation mats on the margins of thermokarst lakes, northern Seward Peninsula, Alaska, USA

    Science.gov (United States)

    Parsekian, A.D.; Jones, Benjamin M.; Jones, M.; Grosse, G.; Walter, Anthony K.M.; Slater, L.

    2011-01-01

    Investigations on the northern Seward Peninsula in Alaska identified zones of recent (<50years) permafrost collapse that led to the formation of floating vegetation mats along thermokarst lake margins. The occurrence of floating vegetation mat features indicates rapid degradation of near-surface permafrost and lake expansion. This paper reports on the recent expansion of these collapse features and their geometry is determined using geophysical and remote sensing measurements. The vegetation mats were observed to have an average thickness of 0.57m and petrophysical modeling indicated that gas content of 1.5-5% enabled floatation above the lake surface. Furthermore, geophysical investigation provides evidence that the mats form by thaw and subsidence of the underlying permafrost rather than terrestrialization. The temperature of the water below a vegetation mat was observed to remain above freezing late in the winter. Analysis of satellite and aerial imagery indicates that these features have expanded at maximum rates of 1-2myr-1 over a 56year period. Including the spatial coverage of floating 'thermokarst mats' increases estimates of lake area by as much as 4% in some lakes. ?? 2011 John Wiley & Sons, Ltd.

  9. Pressure load on specific body areas of gestating sows lying on rubber mats with different softness.

    Science.gov (United States)

    Schubbert, A; Hartung, E; Schrader, L

    2014-08-01

    Rubber mats offer a possibility to increase lying comfort for sows with positive effects on sow lying behavior and health. However, until now, no information has been reported about the relationship between the softness of rubber mats and the pressure load on certain body areas of sows. We used a total of 68 (40 multiparous, 28 primiparous) German Landrace × German Landrace sows with a BW within the range of 90 to 330 kg (divided in 3 weight classes) to measure peak force and distribution of pressure during lying in the sternal and half recumbent position. Measures were done in an experimental pen that was equipped with a pressure sensor map system (5400 NTL; Tekscan Inc., Boston, MA). Three rubber mats differing in softness (penetration depth: hard mat, 4.0 mm [HM]; soft mat, 14.6 mm [SM]; very soft mat, 43.0 mm [VSM]) were tested and compared to concrete floor (CF) as a reference. Pressure load was analyzed in the sternal position for the sternum, belly, and ham body regions and also in the half recumbent position for the shoulder. For each lying position we determined the body region with the highest pressure load and analyzed the peak force (PF) and the contact area (CA) using a mixed model ANOVA (MIXED procedure of SAS Enterprise, version 4.3., SAS Inst. Inc., Cary, NC) with floor type, weight class of sows, and their interaction as fixed factors. Overall, the highest values for PF in the sternal position were found on the sternum (median: 1.62 N/cm(2)) and in the half recumbent position on the shoulder (median: 2.72 N/cm(2)). In the sternal position PF on the sternum was lower on VSM compared to CF (P = 0.001). In the half-recumbent position PF on the shoulder was lower on VSM compared to CF (P = 0.013) and compared to HM (P = 0.011). The weight of the sows affected PF on the sternum in the sternal position, with lower values in weight class 1 compared to weight class 2 (P = 0.001) and weight class 3 (P = 0.002). Contact area under the sternum was larger on

  10. Rhabdochlamydia spp. in an Oregon raptor.

    Science.gov (United States)

    Jouffroy, Sophie J; Schlueter, Andrew H; Bildfell, Robert J; Rockey, Daniel D

    2016-07-01

    PCR-based approach was used to examine the rate of Chlamydia positivity in raptors from wild bird rehabilitation centers in Oregon. Three of 82 birds were identified as positive for Chlamydia with this PCR. Sequence analysis of 16S ribosomal DNA from 2 of these birds confirmed the presence of DNA from phylum Chlamydiae. One bird was positive for Chlamydia psittaci in both choanal and cloacal swabs. The second bird, a louse-infested red-tailed hawk, had evidence of choanal colonization by "Candidatus Rhabdochlamydia" spp. Our study describes evidence of this Chlamydia-like organism in the United States. This survey also suggests that the carriage rate of C. psittaci is low in raptors in Oregon wild bird rehabilitation centers, and that care must be taken in the design of PCR primers for phylum Chlamydiae such that colonization by insect endosymbionts is not mistaken for an infection by known chlamydial pathogens.

  11. Design Studies with DEMIRCI for SPP RFQ

    CERN Document Server

    Yasatekin, B; Alacakir, A; Unel, G

    2014-01-01

    To design a Radio Frequency Quadrupole (RFQ) is a onerous job which requires a good understanding of all the main parameters and the relevant calculations. Up to the present there are only a few software packages performing this task in a reliable way. These legacy software, though proven in time, could benefit from the modern software development tools like Object Oriented (OO) programming. In this note, a new RFQ design software, DEMIRCI is introduced. It is written entirely from scratch using C++ and based on CERN's OO ROOT library. It has a friendly graphical user interface and also a command line interface for batch calculations. It can also interact by file exchange with similar software in the field. After presenting the generic properties of DEMIRCI, its compatibility with similar software packages is discussed based on the results from the reference design parameters of SPP (SNRTC Project Prometheus), a demonstration accelerator at Ankara, Turkey.

  12. Biocontrol of Rhizoctonia solani with Trichoderma Spp.

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@ From over 800 fungal strains of Trichoderma Spp. , 6 strains were found to greatly inhibit the growing of Rhizocotonia solani, the pathogen of rice sheath blight in dual culture. Among them, strain T3 was the best antagonist,which reduced the growing of the pathogen by 52.54% (Table 1). In field, both the pesticide Jinggangmycin and the mixture of T1 T6 could reduce the severity of rice sheath blight(Table 2), which resulted in the increases of seed setting rate and 1000 grain weight. Because the effect of the antagonists on the control of the pathogen could be partially realized in the watery environment, studies on the biocontrol mechanism of the fungi should be strengthened to help the establishment of a best way of antagonist utilization.

  13. Trypanosoma spp. in Swedish game animals.

    Science.gov (United States)

    Neumüller, Magnus; Nilsson, Kenneth; Påhlson, Carl

    2012-01-01

    Serum and blood samples from 36 game animals, shot during the hunting seasons 2007-2009, were collected and analyzed for the presence of Trypanosoma spp. by three methods: isolation, polymerase chain reaction (PCR), and serology. Only fissiped animals were included, four different ruminants and wild boar. Trypanosomes could be isolated from two of the animals, and eight had detectable parasite DNA. Seven animals had high titers of anti-trypanosoma IgG antibodies. The two isolated strains, one from roe dear and one from European elk, were determined to Trypanosoma theileri by partial DNA sequencing of the 18S ribosomal gene. In the seven boars, no Trypanosoma were detected, but four out of seven strongly positive serological samples came from this group. This is the first study in Scandinavia on the presence of Trypanosoma in game animals. The results indicate that trypanosomiasis is frequently occurring among Swedish game animals.

  14. Helicobacter spp. other than H. pylori.

    Science.gov (United States)

    Rossi, Mirko; Hänninen, Marja-Liisa

    2012-09-01

    Significant advances have been made over the last 12 months in the understanding of the biology of non-H. pylori Helicobacter species (NHPH). Several studies have investigated the association between NHPH and human disease, including Crohn's disease, lithiasis, liver disease, coronary disease, gastritis, and pyoderma gangrenosum-like ulcers. Novel Helicobacter taxa were identified in new vertebrate hosts, and new methodologies in the fields of identification of Helicobacter spp. and evaluation of antibiotic resistance were described. The genome of the first human-derived gastric NHPH strain (Helicobacter bizzozeronii CIII-1) was sequenced, and several studies elucidated functions of different genes in NHPH. A number of important investigations regarding pathogenesis and immunopathobiology of NHPH infections have been published including the description of a new urease in Helicobacter mustelae. Finally, the effects of the gut microbiota and probiotics on NHPH infections were investigated.

  15. Antifungal Streptomyces spp. Associated with the Infructescences of Protea spp. in South Africa

    Science.gov (United States)

    Human, Zander R.; Moon, Kyuho; Bae, Munhyung; de Beer, Z. Wilhelm; Cha, Sangwon; Wingfield, Michael J.; Slippers, Bernard; Oh, Dong-Chan; Venter, Stephanus N.

    2016-01-01

    Common saprophytic fungi are seldom present in Protea infructescences, which is strange given the abundance of mainly dead plant tissue in this moist protected environment. We hypothesized that the absence of common saprophytic fungi in Protea infructescences could be due to a special symbiosis where the presence of microbes producing antifungal compounds protect the infructescence. Using a culture based survey, employing selective media and in vitro antifungal assays, we isolated antibiotic producing actinomycetes from infructescences of Protea repens and P. neriifolia from two geographically separated areas. Isolates were grouped into three different morphological groups and appeared to be common in the Protea spp. examined in this study. The three groups were supported in 16S rRNA and multi-locus gene trees and were identified as potentially novel Streptomyces spp. All of the groups had antifungal activity in vitro. Streptomyces sp. Group 1 had inhibitory activity against all tested fungi and the active compound produced by this species was identified as fungichromin. Streptomyces spp. Groups 2 and 3 had lower inhibition against all tested fungi, while Group 3 showed limited inhibition against Candida albicans and Sporothrix isolates. The active compound for Group 2 was also identified as fungichromin even though its production level was much lower than Group 1. The antifungal activity of Group 3 was linked to actiphenol. The observed antifungal activity of the isolated actinomycetes could contribute to protection of the plant material against common saprophytic fungi, as fungichromin was also detected in extracts of the infructescence. The results of this study suggest that the antifungal Streptomyces spp. could play an important role in defining the microbial population associated with Protea infructescences. PMID:27853450

  16. Antifungal Streptomyces spp. associated with the infructescences of Protea spp. in South Africa

    Directory of Open Access Journals (Sweden)

    Zander Human

    2016-11-01

    Full Text Available Common saprophytic fungi are seldom present in Protea infructescences, which is strange given the abundance of mainly dead plant tissue in this moist protected environment. We hypothesized that the absence of common saprophytic fungi in Protea infructescences could be due to a special symbiosis where the presence of microbes producing antifungal compounds protect the infructescence. Using a culture based survey, employing selective media and in vitro antifungal assays, we isolated antibiotic producing actinomycetes from infructescences of Protea repens and P. neriifolia from two geographically separated areas. Isolates were grouped into three different morphological groups and appeared to be common in the Protea spp. examined in this study. The three groups were supported in 16S rRNA and multi-locus gene trees and were identified as potentially novel Streptomyces spp. All of the groups had antifungal activity in vitro. Streptomyces sp. Group 1 had inhibitory activity against all tested fungi and the active compound produced by this species was identified as fungichromin. Streptomyces spp. Groups 2 and 3 had lower inhibition against all tested fungi, while Group 3 showed limited inhibition against Candida albicans and Sporothrix isolates. The active compound for Group 2 was also identified as fungichromin even though its production level was much lower than Group 1. The antifungal activity of Group 3 was linked to actiphenol. The observed antifungal activity of the isolated actinomycetes could contribute to protection of the plant material against common saprophytic fungi, as fungichromin was also detected in extracts of the infructescence. The results of this study suggest that the antifungal Streptomyces spp. could play an important role in defining the microbial population associated with Protea infructescences.

  17. Chondrichthyans of the San Matías Gulf, Patagonia, Argentina Los condrictios del Golfo San Matías, Patagonia, Argentina

    Directory of Open Access Journals (Sweden)

    María R PERIER

    2011-12-01

    Full Text Available The San Matías Gulf (SMG; 41°- 42° S; 64°- 65° W is the largest gulf in Northern Patagonia, Argentina. Up to date, the chondrichthyan fauna of this area has not been reported. Therefore, the aim of this work is to provide a list with species presence and biological characteristics of the chondrichthyans recorded in SMG during the last 30 years. A total of 13 sharks distributed in 11 families, 19 skates and rays distributed in six families, and one holocephalan have been so far recorded in SMG. From the zoogeographical point of view, this chondrichthyan fauna is a mixed assemblage of species typically found in the Argentinean and Magellanean Provinces. The holocephalan Callorhinchus callorynchus is the most landed chondricthyan of the local fishery. With it, five sharks and seven skates are also exploited.El Golfo San Matías (SMG; 41°- 42° S - 64°-65° O se encuentra ubicado en el norte de la Patagonia, Argentina. Hasta la fecha no se cuentan con reportes de la fauna de condrictios de esta zona. Por lo tanto, el objetivo de este trabajo es proporcionar una lista de la presencia y las características biológicas de los condrictios registrados en el SMG durante los últimos 30 años. Un total de 13 tiburones distribuidos en 11 familias, 19 batoideos distribuidos en seis familias y un holocefalo han sido reportados para la zona. Desde el punto de vista zoogeográfico, el SMG presenta un ensamble de especies pertenecientes a las Provincias Magallánica y Argentina. El holocefalo Callorhinchus callorynchus es el condrictio más desembarcado de la pesquería local. Con menor importancia son explotadas comercialmente, cinco especies de tiburones y siete de rayas.

  18. Prevalence and concentration of Arcobacter spp. on Australian Beef Carcasses.

    Science.gov (United States)

    Duffy, Lesley L; Fegan, Narelle

    2012-08-01

    The International Commission on Microbiological Specifications for Foods (ICMSF) classified Arcobacter spp. as emerging pathogens in 2002. Arcobacter spp. have been isolated from numerous food products at retail and from animal carcasses and feces at slaughter. A survey was conducted to determine both the prevalence and concentration of Arcobacter spp. on pre-chill beef carcasses. Surface swab samples were collected from 130 beef carcasses at the end of processing, prior to chilling. The concentration of Arcobacter spp. was determined by a most-probable-number per square centimeter (3 by 3) method with a limit of detection of 0.12 CFU/cm(2). Of the 100 carcasses examined from export abattoirs, 20 (20.0%) were contaminated with Arcobacter spp., and 5 of these had quantifiable levels of contamination ranging from 0.12 to 0.31 CFU/cm(2). Of the 30 carcasses examined at a pet food abattoir, 25 (83.3%) were contaminated with Arcobacter spp., and 10 of these had quantifiable levels of contamination ranging from 0.12 to 0.95 CFU/cm(2). Three species of Arcobacter, A. butzleri, A. cryaerophilus, and A. skirowii, were identified by PCR. Each of the species was present in an approximately equal ratio from export abattoirs. This study demonstrates that slaughter practices at export abattoirs are sufficient to maintain both low prevalence and low levels of contamination of beef carcasses with Arcobacter spp.

  19. Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments

    DEFF Research Database (Denmark)

    Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus

    2013-01-01

    -sulfidic sites; de novo assemblies were obtained for Synechococcus-like populations at Chocolate Pots (CP_7) and Fischerella-like populations at White Creek (WC_6). Chloroflexi-like sequences (esp. Roseiflexus and/or Chloroflexus spp.) were observed in all six samples and contained genes involved...

  20. 苔藓植物matK基因PCR反应体系的建立和优化%Establishment and Optimization of matK gene-PCR Amplification System for Bryophytes

    Institute of Scientific and Technical Information of China (English)

    郑红建; 张安世

    2012-01-01

    [Objective] To establish and optimize the matK gene-PCR reaction system for Bryophytes. [ Method ] Using genomic DNA of Bryo-phytes extracted via an improved CTAB method, single factor analysis was performed to investigate the impacts of DNA template concentration, primer concentration, 2 x Taq MasterMix concentration on matK gene-PCR amplification and to optimize this system for Bryophytes. [Result] The matK gene-PCR amplification(10.0 μl) suitable for Bryophytes was determined to be composed of 0.5 μl DNA, 0.2 μl primer and 5.6 μl 2 × Taq MasterMix. [ Conclusion] The study laid basis for analyzing the molecular systematics of Bryophytes.%[目的]建立和优化适合于苔藓植物matK基因的PCR反应体系.[方法]以鳞叶藓为材料,利用改良CTAB法提取了基因组DNA,利用单因素试验分析了DNA模板、引物和2×Taq MasterMix的浓度对苔藓植物matK基因PCR反应的影响,对适合苔藓植物的matK基因PCR反应条件进行了优化.[结果]适合苔藓植物的matK基因PCR反应体系为10.0 μl,其中含DNA模板0.5μl,正反引物各0.2μl,2×Taq MasterMix 5.6 μl.[结论]为苔藓植物的分子系统学等研究奠定了基础.

  1. Impacto de herbicidas em isolados de Trichoderma spp. Impact of herbicides on strains of Trichoderma spp.

    Directory of Open Access Journals (Sweden)

    M.R. Reis

    2013-06-01

    Full Text Available O uso de microrganismos é uma alternativa para o controle de doenças em plantas. Todavia, é prudente verificar a interação desse com os demais métodos de controle empregados em determinada cultura. Dessa forma, objetivou-se avaliar a fungitoxicidade dos herbicidas sobre o crescimento e desenvolvimento dos isolados de Trichoderma spp. Utilizou-se o delineamento inteiramente casualizado, em esquema fatorial 6 x 6 x 4, com quatro repetições. O fator A correspondeu aos herbicidas pendimethalin, clomazone, carfentrazone-ethyl, oxadiazon, thiobencarb + propanil e byspiribac-sodium; o fator B, às doses dos herbicidas - 0, 25, 50, 75, 100 e 200% da dose recomendada; e o fator C, aos isolados de Trichoderma spp. AJAM 18, CE 66, TRI 01 e TRI 02. O ensaio foi realizado em condições in vitro; avaliaram-se o crescimento micelial radial (CMR e a esporulação dos isolados após aplicação dos herbicidas. Observaram-se diferenças de sensibilidade dos isolados para o mesmo produto testado. O oxadiazon reduziu o CMR dos isolados AJAM 18 e TRI 01 em 66 e 35%, respectivamente. No entanto, reduziu apenas 16% do CMR do isolado TRI 02 e não alterou o CMR do isolado CE 66 mesmo em 200% da dose recomendada. Verificaram-se diferentes efeitos dos produtos em cada isolado. A mistura comercial de thiobencarb+propanil foi altamente tóxica aos isolados de Trichoderma spp., com reduções em torno de 85% no CMR e no número de esporos. Por outro lado, o byspiribac-sodium pouco afetou os isolados, apresentando reduções inferiores a 10% no CMR e na esporulação. O carfentrazone-ethyl e byspiribac-sodium demonstraram ser compatíveis com os isolados de Trichoderma spp. estudados.The use of microorganisms is an alternative for the control of plant diseases. However, one should verify its interaction with other methods of control used for a particular crop. The objective of this work was to evaluate the effect of herbicide fungitoxicity on the growth and

  2. Insights into the genome of large sulfur bacteria revealed by analysis of single filaments.

    Directory of Open Access Journals (Sweden)

    Marc Mussmann

    2007-09-01

    Full Text Available Marine sediments are frequently covered by mats of the filamentous Beggiatoa and other large nitrate-storing bacteria that oxidize hydrogen sulfide using either oxygen or nitrate, which they store in intracellular vacuoles. Despite their conspicuous metabolic properties and their biogeochemical importance, little is known about their genetic repertoire because of the lack of pure cultures. Here, we present a unique approach to access the genome of single filaments of Beggiatoa by combining whole genome amplification, pyrosequencing, and optical genome mapping. Sequence assemblies were incomplete and yielded average contig sizes of approximately 1 kb. Pathways for sulfur oxidation, nitrate and oxygen respiration, and CO2 fixation confirm the chemolithoautotrophic physiology of Beggiatoa. In addition, Beggiatoa potentially utilize inorganic sulfur compounds and dimethyl sulfoxide as electron acceptors. We propose a mechanism of vacuolar nitrate accumulation that is linked to proton translocation by vacuolar-type ATPases. Comparative genomics indicates substantial horizontal gene transfer of storage, metabolic, and gliding capabilities between Beggiatoa and cyanobacteria. These capabilities enable Beggiatoa to overcome non-overlapping availabilities of electron donors and acceptors while gliding between oxic and sulfidic zones. The first look into the genome of these filamentous sulfur-oxidizing bacteria substantially deepens the understanding of their evolution and their contribution to sulfur and nitrogen cycling in marine sediments.

  3. Multiple Wavelength-Channels in SPP Waveguides for Optical Communication

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhi-You; HUANG Peng; GUO Xiao-Wei; WANG Jing-Quan; FANG Lang; DU Jing-Lei; LUO Xian-Gang; DU Chun-Lei

    2008-01-01

    @@ Surface plasmon polaritons(SPPs)can be excited,meanwhile some peculiar optical phenomena will appear when light irradiates metal structures under some conditions.Based on photonic band gap theory,in this Letter we present a kind of SPP waveguide with multiple wavelength-channels.By using the Bragg effect and introducing some geometric defect layers into a quasi-periodic metal heterowaveguide,the multiple SPP forbidden bands(SPFBs)in a given waveband can be generated,and the multiple SPP pass bands(SPPBs)with narrow bandwidth in each SPFB can be realized.

  4. Chemical and ecological control methods for Epitrix spp.

    Directory of Open Access Journals (Sweden)

    A. G. S. Cuthbertson

    2015-01-01

    Full Text Available Very little information exists in regards to the control options available for potato flea beetles, Epitrix spp. This short review covers both chemical and ecological options currently available for control of Epitrix spp. Synthetic pyrethroids are the weapon of choice for the beetles. However, the impetus in integrated pest management is to do timely (early-season applications with something harsh which will give long-term protection at a time when there are not a lot of beneficials in the field. Finding the balance for control of Epitrix spp. is proving difficult.

  5. A simple method for DNA isolation from Xanthomonas spp.

    Directory of Open Access Journals (Sweden)

    Gomes Luiz Humberto

    2000-01-01

    Full Text Available A simple DNA isolation method was developed with routine chemicals that yields high quality and integrity preparations when compared to some of the most well known protocols. The method described does not require the use of lysing enzymes, water bath and the DNA was obtained within 40 minutes The amount of nucleic acid extracted (measured in terms of absorbancy at 260 nm from strains of Xanthomonas spp., Pseudomonas spp. and Erwinia spp. was two to five times higher than that of the most commonly used method.

  6. Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar

    KAUST Repository

    Al-Thani, Roda

    2014-03-21

    The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1–L4) in the photosynthetic mats. Chlorophyll a (Chl a) concentration and distribution (measured by HPLC and hyperspectral imaging, respectively), the phycocyanin distribution (scanned with hyperspectral imaging), oxygenic photosynthesis (determined by microsensor), and the abundance of photosynthetic microorganisms (from 16S and 18S rRNA sequencing) decreased with depth in the euphotic layer (L1). Incident irradiance exponentially attenuated in the same zone reaching 1% at 1.7-mm depth. Proteobacteria dominated all layers of the mat (24%–42% of the identified bacteria). Anoxygenic photosynthetic bacteria (dominated by Chloroflexus) were most abundant in the third red layer of the mat (L3), evidenced by the spectral signature of Bacteriochlorophyll as well as by sequencing. The deep, black layer (L4) was dominated by sulfate reducing bacteria belonging to the Deltaproteobacteria, which were responsible for high sulfate reduction rates (measured using 35S tracer). Members of Halobacteria were the dominant Archaea in all layers of the mat (92%–97%), whereas Nematodes were the main Eukaryotes (up to 87%). Primary productivity rates of Um Alhool mat were similar to those of other hypersaline microbial mats. However, sulfate reduction rates were relatively low, indicating that oxygenic respiration contributes more to organic material degradation than sulfate reduction, because of bioturbation. Although Um Alhool hypersaline mat is a nutrient-limited ecosystem, it is interestingly dynamic and phylogenetically highly diverse. All its components work in a highly efficient and synchronized way to compensate for the lack of nutrient supply provided during regular inundation periods.

  7. Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics.

    Science.gov (United States)

    Ruvindy, Rendy; White, Richard Allen; Neilan, Brett Anthony; Burns, Brendan Paul

    2016-01-01

    Modern microbial mats are potential analogues of some of Earth's earliest ecosystems. Excellent examples can be found in Shark Bay, Australia, with mats of various morphologies. To further our understanding of the functional genetic potential of these complex microbial ecosystems, we conducted for the first time shotgun metagenomic analyses. We assembled metagenomic next-generation sequencing data to classify the taxonomic and metabolic potential across diverse morphologies of marine mats in Shark Bay. The microbial community across taxonomic classifications using protein-coding and small subunit rRNA genes directly extracted from the metagenomes suggests that three phyla Proteobacteria, Cyanobacteria and Bacteriodetes dominate all marine mats. However, the microbial community structure between Shark Bay and Highbourne Cay (Bahamas) marine systems appears to be distinct from each other. The metabolic potential (based on SEED subsystem classifications) of the Shark Bay and Highbourne Cay microbial communities were also distinct. Shark Bay metagenomes have a metabolic pathway profile consisting of both heterotrophic and photosynthetic pathways, whereas Highbourne Cay appears to be dominated almost exclusively by photosynthetic pathways. Alternative non-rubisco-based carbon metabolism including reductive TCA cycle and 3-hydroxypropionate/4-hydroxybutyrate pathways is highly represented in Shark Bay metagenomes while not represented in Highbourne Cay microbial mats or any other mat forming ecosystems investigated to date. Potentially novel aspects of nitrogen cycling were also observed, as well as putative heavy metal cycling (arsenic, mercury, copper and cadmium). Finally, archaea are highly represented in Shark Bay and may have critical roles in overall ecosystem function in these modern microbial mats.

  8. rbcL and matK earn two thumbs up as the core DNA barcode for ferns.

    Directory of Open Access Journals (Sweden)

    Fay-Wei Li

    Full Text Available BACKGROUND: DNA barcoding will revolutionize our understanding of fern ecology, most especially because the accurate identification of the independent but cryptic gametophyte phase of the fern's life history--an endeavor previously impossible--will finally be feasible. In this study, we assess the discriminatory power of the core plant DNA barcode (rbcL and matK, as well as alternatively proposed fern barcodes (trnH-psbA and trnL-F, across all major fern lineages. We also present plastid barcode data for two genera in the hyperdiverse polypod clade--Deparia (Woodsiaceae and the Cheilanthes marginata group (currently being segregated as a new genus of Pteridaceae--to further evaluate the resolving power of these loci. PRINCIPAL FINDINGS: Our results clearly demonstrate the value of matK data, previously unavailable in ferns because of difficulties in amplification due to a major rearrangement of the plastid genome. With its high sequence variation, matK complements rbcL to provide a two-locus barcode with strong resolving power. With sequence variation comparable to matK, trnL-F appears to be a suitable alternative barcode region in ferns, and perhaps should be added to the core barcode region if universal primer development for matK fails. In contrast, trnH-psbA shows dramatically reduced sequence variation for the majority of ferns. This is likely due to the translocation of this segment of the plastid genome into the inverted repeat regions, which are known to have a highly constrained substitution rate. CONCLUSIONS: Our study provides the first endorsement of the two-locus barcode (rbcL+matK in ferns, and favors trnL-F over trnH-psbA as a potential back-up locus. Future work should focus on gathering more fern matK sequence data to facilitate universal primer development.

  9. Community structure and activity of a highly dynamic and nutrient-limited hypersaline microbial mat in Um Alhool Sabkha, Qatar.

    Directory of Open Access Journals (Sweden)

    Roda Al-Thani

    Full Text Available The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1-L4 in the photosynthetic mats. Chlorophyll a (Chl a concentration and distribution (measured by HPLC and hyperspectral imaging, respectively, the phycocyanin distribution (scanned with hyperspectral imaging, oxygenic photosynthesis (determined by microsensor, and the abundance of photosynthetic microorganisms (from 16S and 18S rRNA sequencing decreased with depth in the euphotic layer (L1. Incident irradiance exponentially attenuated in the same zone reaching 1% at 1.7-mm depth. Proteobacteria dominated all layers of the mat (24%-42% of the identified bacteria. Anoxygenic photosynthetic bacteria (dominated by Chloroflexus were most abundant in the third red layer of the mat (L3, evidenced by the spectral signature of Bacteriochlorophyll as well as by sequencing. The deep, black layer (L4 was dominated by sulfate reducing bacteria belonging to the Deltaproteobacteria, which were responsible for high sulfate reduction rates (measured using 35S tracer. Members of Halobacteria were the dominant Archaea in all layers of the mat (92%-97%, whereas Nematodes were the main Eukaryotes (up to 87%. Primary productivity rates of Um Alhool mat were similar to those of other hypersaline microbial mats. However, sulfate reduction rates were relatively low, indicating that oxygenic respiration contributes more to organic material degradation than sulfate reduction, because of bioturbation. Although Um Alhool hypersaline mat is a nutrient-limited ecosystem, it is interestingly dynamic and phylogenetically highly diverse. All its components work in a highly efficient and synchronized way to compensate for the lack of nutrient supply provided during regular inundation periods.

  10. Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

    Energy Technology Data Exchange (ETDEWEB)

    Ruvindy, Rendy; White III, Richard Allen; Neilan, Brett Anthony; Burns, Brendan Paul

    2015-05-29

    Modern microbial mats are potential analogues of some of Earth’s earliest ecosystems. Excellent examples can be found in Shark Bay, Australia, with mats of various morphologies. To further our understanding of the functional genetic potential of these complex microbial ecosystems, we conducted for the first time shotgun metagenomic analyses. We assembled metagenomic nextgeneration sequencing data to classify the taxonomic and metabolic potential across diverse morphologies of marine mats in Shark Bay. The microbial community across taxonomic classifications using protein-coding and small subunit rRNA genes directly extracted from the metagenomes suggests that three phyla Proteobacteria, Cyanobacteria and Bacteriodetes dominate all marine mats. However, the microbial community structure between Shark Bay and Highbourne Cay (Bahamas) marine systems appears to be distinct from each other. The metabolic potential (based on SEED subsystem classifications) of the Shark Bay and Highbourne Cay microbial communities were also distinct. Shark Bay metagenomes have a metabolic pathway profile consisting of both heterotrophic and photosynthetic pathways, whereas Highbourne Cay appears to be dominated almost exclusively by photosynthetic pathways. Alternative non-rubisco-based carbon metabolism including reductive TCA cycle and 3-hydroxypropionate/4-hydroxybutyrate pathways is highly represented in Shark Bay metagenomes while not represented in Highbourne Cay microbial mats or any other mat forming ecosystems investigated to date. Potentially novel aspects of nitrogen cycling were also observed, as well as putative heavy metal cycling (arsenic, mercury, copper and cadmium). Finally, archaea are highly represented in Shark Bay and may have critical roles in overall ecosystem function in these modern microbial mats.

  11. Geochemical characterization of the hydrous pyrolysis products from a recent cyanobacteria-dominated microbial mat

    Energy Technology Data Exchange (ETDEWEB)

    Franco, N.; Mendoça-Filho, J.G.; Silva, T.F.; Stojanovic, K.; Fontana, L.F.; Carvalhal-Gomes, S.B.V.; Silva, F.S.; Furukawa, G.G.

    2016-07-01

    Hydrous pyrolysis experiments were performed on a recent microbial mat sample from Lagoa Vermelha, Brazil, to determine whether crude oil can be generated and expelled during artificial maturation of the Organic Matter (OM). The experiments were conducted at 280ºC, 330ºC and 350ºC during 20h. Two types of liquid pyrolysis products, assigned as free oil and bitumen, were isolated and analyzed. Free oil represents free organic phase released by hydrous pyrolysis, whereas bitumen was obtained by extraction from the solid pyrolysis residue with dichloromethane. Changes in the OM maturity were determined using Rock-Eval parameters and biomarker maturity ratios of original sample and pyrolysis products. Biomarker compositions of original sample extract and liquid pyrolysates were used for determination of dominant bacterial source. The yields of free oil and bitumen showed that a microbial mat OM has a high liquid hydrocarbons generation potential. Rock-Eval maturity parameters, biopolymer and biomarker compositions indicate a significant increase of the OM maturity during hydrous pyrolysis. At 280ºC the release of free, adsorbed and occluded compounds was observed; however, without a cracking of the OM. At 330ºC the generation of bitumen and free oil is mostly related to the OM cracking. The highest yield of free oil was recorded at this temperature. Distribution of biomarkers in the extract of original sample and liquid pyrolysates confirms cyanobacteria-dominated microbial mats, whereas the identification of long chain n-alkane series, with maximum at C26, and prominent C30 hop-17(21)-ene additionally suggest the presence of sulfate reducing bacteria. (Author)

  12. Quantifying the tensile strength of microbial mats grown over noncohesive sediments.

    Science.gov (United States)

    Vignaga, E; Haynes, H; Sloan, W T

    2012-05-01

    Biofilms in marine and fluvial environments can comprise strong bacterial and diatom mats covering large areas of the bed and act to bind sediments. In this case the bed material becomes highly resistant to shear stresses applied by the overlying fluid motion and detachment, when it does occur, is manifest in patches of biofilm of the order cm(2) being entrained into the flow. This article is the first to report tensile test data specific to the centimeter scale using moist biofilm/sediment composite materials; the strain (ε)-stress (σ) relationships permit quantification of the elasticity (Young's modulus, E) and cohesive strength of each specimen. Specifically, we compare the mechanical strength of cyanobacterial biofilm-only samples to that of biofilm cultured over sediment samples (glass beads or natural sands of d ~ 1 mm) for up to 8 weeks. The range of tensile strength (1,288-3,283 Pa) for composite materials was up to three times higher than previous tensile tests conducted at smaller scale on mixed culture biofilm [Ohashi et al. (1999) Water Sci Technol 39:261-268], yet of similar range to cohesive strength values recorded on return activated sludge flocs [RAS; Poppele and Hozalski (2003) J Microbiol Methods 55:607-615]. Composite materials were 3-6 times weaker than biofilm-only samples, indicating that adhesion to sediment grains is weaker than cohesion within the biofilm. Furthermore, in order to relate the tensile test results to the more common in-situ failure of bio-mats due to shear flow, controlled erosion experiments were conducted in a hydraulic flume with live fluid flow. Here, the fluid shear stress causing erosion was 3 orders of magnitude lower than tensile stress; this highlights both the problem of interpreting material properties measured ex-situ and the need for a better mechanistic model of bio-mat detachment.

  13. Aumento de matéria orgânica num latossolo bruno em plantio direto

    Directory of Open Access Journals (Sweden)

    Costa Falberni de Souza

    2004-01-01

    Full Text Available O aumento do estoque de matéria orgânica do solo em sistemas conservacionistas de manejo é dependente do tipo de solo e das condições climáticas, e tem reflexos na qualidade física do solo. Neste estudo, avaliou-se um experimento de longa duração (21 anos quanto ao efeito do sistema plantio direto (PD sobre os estoques de carbono orgânico total (COT e particulado (COP, >53mm, bem como a sua relação com a estabilidade de agregados de um Latossolo Bruno, em Guarapuava, PR. O solo em PD apresentou taxa de incremento de 0,15Mg ha-1 ano-1 de COT e 0,06Mg ha-1 ano-1 de COP na camada de 0-20cm, as quais foram calculadas em comparação aos estoques de carbono orgânico do solo em preparo convencional. As baixas taxas de incremento nos estoques de carbono orgânico possivelmente estejam relacionadas à alta estabilidade física da matéria orgânica neste solo argiloso e com mineralogia predominantemente gibsítica. O diâmetro médio geométrico (DMG dos agregados de solo variou de 1,6 a 3,7mm e foi positiva e linearmente relacionado com os teores de COT e COP, o que reforça a importância da matéria orgânica na qualidade física de Latossolos subtropicais.

  14. Inactivation of Salmonella spp. and Listeria spp. by Palmitic, Stearic, and Oleic Acid Sophorolipids and Thiamine Dilauryl Sulfate.

    Science.gov (United States)

    Zhang, Xuejie; Ashby, Richard; Solaiman, Daniel K Y; Uknalis, Joseph; Fan, Xuetong

    2016-01-01

    Food contaminated with human pathogens, such as Salmonella spp. and Listeria monocytogenes, frequently causes outbreaks of foodborne illness. Consumer concern over the use of synthesized antimicrobials to enhance microbial food safety has led to a search of natural alternatives. The objectives of this study were to evaluate the antimicrobial activity of various types of sophorolipids (SLs) and thiamine dilauryl sulfate (TDS) against pathogenic Salmonella spp. and Listeria spp. Both free and lactonic forms of SLs were synthesized from Candida bombicola using palmitic, stearic, and oleic acids as co-feedstocks. TDS and purified SLs were used to treat cocktails of Salmonella spp. and Listeria spp. Results showed that lactonic SLs had higher antimicrobial activity than the free-acid form, and Gram-positive Listeria spp. were more susceptible to SLs and TDS than Gram-negative Salmonella spp. Listeria populations were reduced from an initial concentration of 7.2 log CFU/mL to a non-detectible level within a 1 min treatment of 0.1% (w/v) lactonic SLs and TDS in the presence of 20% ethanol, which itself did not significantly reduce the populations. There were no significant differences in the antimicrobial efficacy among palmitic, stearic, and oleic acid-based SLs against Salmonella or Listeria spp. Ethanol was utilized to improve the antimicrobial activity of free-acid SLs against Gram-negative bacteria. In general, TDS was more effective than the SLs against Salmonella and Listeria spp. scanning electron microscopy and transmission electron microscopy images showed that SLs and TDS damaged Listeria cell membranes and resulted in cell lysis. Overall, our results demonstrated that SLs and TDS in the presence of ethanol can be used to inactivate foodborne pathogens, especially Gram-positive bacteria.

  15. Inactivation of Salmonella spp. and Listeria spp. by Palmitic, Stearic, and Oleic Acid Sophorolipids and Thiamine Dilauryl Sulfate

    Science.gov (United States)

    Zhang, Xuejie; Ashby, Richard; Solaiman, Daniel K. Y.; Uknalis, Joseph; Fan, Xuetong

    2016-01-01

    Food contaminated with human pathogens, such as Salmonella spp. and Listeria monocytogenes, frequently causes outbreaks of foodborne illness. Consumer concern over the use of synthesized antimicrobials to enhance microbial food safety has led to a search of natural alternatives. The objectives of this study were to evaluate the antimicrobial activity of various types of sophorolipids (SLs) and thiamine dilauryl sulfate (TDS) against pathogenic Salmonella spp. and Listeria spp. Both free and lactonic forms of SLs were synthesized from Candida bombicola using palmitic, stearic, and oleic acids as co-feedstocks. TDS and purified SLs were used to treat cocktails of Salmonella spp. and Listeria spp. Results showed that lactonic SLs had higher antimicrobial activity than the free-acid form, and Gram-positive Listeria spp. were more susceptible to SLs and TDS than Gram-negative Salmonella spp. Listeria populations were reduced from an initial concentration of 7.2 log CFU/mL to a non-detectible level within a 1 min treatment of 0.1% (w/v) lactonic SLs and TDS in the presence of 20% ethanol, which itself did not significantly reduce the populations. There were no significant differences in the antimicrobial efficacy among palmitic, stearic, and oleic acid-based SLs against Salmonella or Listeria spp. Ethanol was utilized to improve the antimicrobial activity of free-acid SLs against Gram-negative bacteria. In general, TDS was more effective than the SLs against Salmonella and Listeria spp. scanning electron microscopy and transmission electron microscopy images showed that SLs and TDS damaged Listeria cell membranes and resulted in cell lysis. Overall, our results demonstrated that SLs and TDS in the presence of ethanol can be used to inactivate foodborne pathogens, especially Gram-positive bacteria. PMID:28066390

  16. Formation of Microbial Mats and Salt in Radioactive Paddy Soils in Fukushima, Japan

    Directory of Open Access Journals (Sweden)

    Kazue Tazaki

    2015-12-01

    Full Text Available Coastal areas in Minami-soma City, Fukushima, Japan, were seriously damaged by radioactive contamination from the Fukushima Daiichi Nuclear Power Plant (FDNPP accident that caused multiple pollution by tsunami and radionuclide exposure, after the Great East Japan Earthquake, on 11 March 2011. Some areas will remain no-go zones because radiation levels remain high. In Minami-soma, only 26 percent of decontamination work had been finished by the end of July in 2015. Here, we report the characterization of microbial mats and salt found on flooded paddy fields at Karasuzaki, Minami-soma City, Fukushima Prefecture, Japan which have been heavily contaminated by radionuclides, especially by Cs (134Cs, 137Cs, 40K, Sr (89Sr, 90Sr, and 91 or 95Zr even though it is more than 30 km north of the FDNPP. We document the mineralogy, the chemistry, and the micro-morphology, using a combination of micro techniques. The microbial mats were found to consist of diatoms with mineralized halite and gypsum by using X-ray diffraction (XRD. Particular elements concentrated in microbial mats were detected using scanning electron microscopy equipped with energy dispersive spectroscopy (SEM-EDS and X-ray fluorescence (XRF. The objective of this contribution is to illustrate the ability of various diatoms associated with minerals and microorganisms which are capable of absorbing both radionuclides and stable isotopes from polluted paddy soils in extreme conditions. Ge semiconductor analysis of the microbial mats detected 134Cs, 137Cs, and 40K without 131I in 2012 and in 2013. Quantitative analysis associated with the elemental content maps by SEM-EDS indicated the possibility of absorption of radionuclide and stable isotope elements from polluted paddy soils in Fukushima Prefecture. In addition, radionuclides were detected in solar salts made of contaminated sea water collected from the Karasuzaki ocean bath, Minami-soma, Fukushima in 2015, showing high Zr content associated

  17. Dimethoate degradation in plants and during processing of yerba maté leaves

    Directory of Open Access Journals (Sweden)

    Schmalko Miguel E.

    2002-01-01

    Full Text Available The objective of this research was to study degradation kinetics of dimethoate in plants of Ilex paraguariensis Saint Hilaire (or yerba maté and during its processing. To determine dimethoate concentration, a capillary gas chromatography technique with a mass selective detector was used. Half-life times in plants ranked between 9.8 and 11.8 days. During processing, with a blanching and two drying steps, dimethoate concentration decayed to a 22.7% of its initial value (in dry basis; while during seasoning step (at 45degreesC, half-life time was 17.3 days. With these values, preharvest safety interval was determined.

  18. Charpy V, an application in Mat lab; Charpy V, una aplicacion en Matlab

    Energy Technology Data Exchange (ETDEWEB)

    Castillo M, J.A.; Torres V, M. [ININ, 52045 Ocoyoacac, Estado de Mexico (Mexico)

    2003-07-01

    The obtained results with the system Charpy V{sub V}1 designed in Mat lab for the estimate of parameters of three mathematical models are shown. The adjustment of data is used to determine the fracture energy, the lateral expansion and the percentage of ductility of steels coming from the reactor vessels of Laguna Verde, Veracruz. The data come from test tubes type Charpy V of irradiated material and not irradiated. To verify our results they were compared with those obtained by General Electric of data coming from the Laguna Verde nuclear power plant. (Author)

  19. HiRadMat: A high‐energy, pulsed beam, material irradiation facility

    CERN Multimedia

    Charitonidis, Nikolaos

    2016-01-01

    HiRadMat is a facility constructed in 2011, designed to provide high-intensity pulsed beams to an irradiation area where different material samples or accelerator components can be tested. The facility, located at the CERN SPS accelerator complex, uses a 440 GeV proton beam with a pulse length up to 7.2 μs and a maximum intensity up to 1E13 protons / pulse. The facility, a unique place for performing state-of-the art beam-to-material experiments, operates under transnational access and welcomes and financially supports, under certain conditions, experimental teams to perform their experiments.

  20. Internetveikals elektroniskajām grāmatām

    OpenAIRE

    Ždanovs, Andrejs

    2011-01-01

    “Interneta veikals elektroniskajām grāmatām” ir tīmeklī bāzēts projekts, kur tiek realizēta grāmatu pārdošana elektroniskajā versijā, ka arī ierīces to lasīšanai. Projekts tiek izstrādāts PHP valodā izmantojot “CodeIgniter“ platformu, kura savukārt pārstāv MVC principu. Kā arī tika pielietotas MySQL un jQuery tehnoloģijas.

  1. Campos de Gauge e matéria na rede - generalizando o Toric Code

    OpenAIRE

    2015-01-01

    Fases topológicas da matéria são caracterizadas por terem uma degenerescên- cia do estado fundamental que depende da topologia da variedade em que o sistema físico é definido, além disso apresentam estados excitados no interior do sistema que são interpretados como sendo quase-partículas com estatística de tipo anyonica. Estes sistemas apresentam também excitações sem gap de energia em sua borda. Fases topologicamente ordenadas distintas não podem ser distinguidas pelo esquema usual de quebra...

  2. Woven Hybrid Composites - Tensile and Flexural Properties of Jute Mat Fibres with Epoxy Composites

    Science.gov (United States)

    Gopal, P.; Bupesh Raja, V. K.; Chandrasekaran, M.; Dhanasekaran, C.

    2017-03-01

    The jute mat fibers are fabricated with several layers of fiber with opposite orientation in addition with coconut shell powder and resins. In current trends, metallic components are replaced by natural fibers because of the inherent properties such as light in weight, easy to fabricate, less cost and easy availability. This material has high strength and withstands the load. In this investigation the plates are made without stitching the fiber. The result of tensile strength and flexural strength are compared with nano material (coconut shell powder).

  3. Interlaboratorium vergelijking van het onderzoek naar Aeromonas spp. in drinkwater

    NARCIS (Netherlands)

    Havelaar AH; During M; Versteegh JFM

    1986-01-01

    Door middel van onderzoek van zes kunstmatig besmette gesimuleerde monsters drinkwater ( 4 Aeromonas spp., 1 Klebsiella oxytoca, 1 Pseudomonas aeruginosa) werd een vergelijking gemaakt van de resultaten van Aeromonas onderzoek in 14 laboratoria. De tellingen in de deelnemende laboratoria vertoonde

  4. 21 CFR 866.3300 - Haemophilus spp. serological reagents.

    Science.gov (United States)

    2010-04-01

    ... derived from clinical specimens. The identification aids in the diagnosis of diseases caused by bacteria belonging to the genus Haemophilus and provides epidemiological information on diseases cause by these microorganisms. Diseases most often caused by Haemophilus spp. include pneumonia, pharyngitis,...

  5. Symbiotic relationship of Thiothrix spp. with an echinoderm

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R.L. [Westinghouse Savannah River Co., Aiken, SC (United States); De Ridder, C. [Univ. Libre de Bruxelles, Brussels (Belgium). Lab. de Biologie Marine

    1998-09-01

    Thiothrix-like bacteria have been reported as symbionts in invertebrates from sulfide-rich habitats. Isolation of these symbiotic Thiothrix-like bacteria has failed, and the organisms have not been previously identified with certainty. The genus Thiothrix was created for ensheathed filamentous bacteria that oxidize sulfide and deposit sulfur granules internally, attach to substrates, produce gliding gonidia, and form rosettes. Immunoassay procedures were used to investigate the symbiotic relationship of Thiothrix spp. in the intestinal cecum of the spatangoid species Echinocardium cordatum. Thiothrix spp. were identified in nodule samples from E. cordatum digestive tubes based on microscopic examination, enzyme-linked immunosorbent assay, and indirect immunofluorescence. Thiothrix spp. protein made up as much as 84% of the total protein content of the nodules. This is the first identification of Thiothrix spp. internally symbiotic with marine invertebrates.

  6. Prevalence of Salmonella spp. in pet turtles and their environment

    Science.gov (United States)

    Back, Du-San; Shin, Gee-Wook; Wendt, Mitchell

    2016-01-01

    Pet turtles are known as a source of Salmonella infection to humans when handled in captivity. Thirty four turtles purchased from pet shops and online markets in Korea were examined to determine whether the turtles and their environment were contaminated with Salmonella spp. Salmonella spp. were isolated from fecal samples of 17 turtles. These isolates were identified as S. enterica through 16S rRNA gene sequencing. The isolation rate of Salmonella spp. from the soil and water samples increased over time. We concluded that a high percentage of turtles being sold in pet shops were infected with Salmonella spp., and their environments tend to become contaminated over time unless they are maintained properly. These results indicate that pet turtles could be a potential risk of salmonellosis in Korea. PMID:27729933

  7. Mat-related sedimentary structures in Neoproterozoic peritidal passive margin deposits of the West African Craton (Anti-Atlas, Morocco)

    Science.gov (United States)

    Bouougri, E.; Porada, H.

    2002-11-01

    Proterozoic inliers in the central Anti-Atlas mountains expose predominantly siliciclastic sedimentary successions deposited in peritidal zones along the Neoproterozoic continental margin of the West African Craton (WAC). The low-grade metamorphic and modestly deformed sediments contain a wealth of sedimentary structures related to the former presence and activities of microbial mats and respective physicobiological processes. The well-preserved structures include wrinkle structures, erosion marks, microbial sand chips, spindle-shaped and subcircular microbial shrinkage cracks, and possibly gas domes and cabbage-head structures. Thin sections exhibit mat fragments and dispersed grains of hematite/limonite after pyrite in fine-grained quartzitic storm deposits. Post-storm layers frequently consist of matrix-supported sand-sized to silt-sized grains and are overlain by argillaceous veneers including isolated silt-sized grains and black carbonaceous laminae. The muddy veneers are considered to represent compacted stacks of microbial mats (biolaminites), which colonized and biostabilized storm and post-storm layers, and thus prevented them from eroding. In the absence of grazing and burrowing organisms and at suitable depositional and hydrodynamic conditions, it may be expected that Proterozoic microbial mats extensively grew from the supratidal to the intertidal zones and occasionally, e.g. behind protective barriers, in the subtidal zone and beyond. Mat-related structures, however, need specific conditions for their formation and preservation: Wrinkle structures, erosion marks, and microbial sand chips require tractional currents and soon deposition and burial, respectively. Such conditions are preferably met in intertidal and supratidal zones. Spindle-shaped and subcircular cracks require mat shrinkage due to either desiccation or "syneresis". Crack propagation implies progressive shrinkage, while superposition of crack generations indicates repeated alternation

  8. Benthic cyanobacterial mats in the high arctic: multi-layer structure and fluorescence responses to osmotic stress.

    Science.gov (United States)

    Lionard, Marie; Péquin, Bérangère; Lovejoy, Connie; Vincent, Warwick F

    2012-01-01

    Cyanobacterial mats are often a major biological component of extreme aquatic ecosystems, and in polar lakes and streams they may account for the dominant fraction of total ecosystem biomass and productivity. In this study we examined the vertical structure and physiology of Arctic microbial mats relative to the question of how these communities may respond to ongoing environmental change. The mats were sampled from Ward Hunt Lake (83°5.297'N, 74°9.985'W) at the northern coast of Arctic Canada, and were composed of three visibly distinct layers. Microsensor profiling showed that there were strong gradients in oxygen within each layer, with an overall decrease from 100% saturation at the mat surface to 0%, at the bottom, accompanied by an increase of 0.6 pH units down the profile. Gene clone libraries (16S rRNA) revealed the presence of Oscillatorian sequences throughout the mat, while Nostoc related species dominated the two upper layers, and Nostocales and Synechococcales sequences were common in the bottom layer. High performance liquid chromatography analyses showed a parallel gradient in pigments, from high concentrations of UV-screening scytonemin in the upper layer to increasing zeaxanthin and myxoxanthin in the bottom layer, and an overall shift from photoprotective to photosynthetic carotenoids down the profile. Climate change is likely to be accompanied by lake level fluctuations and evaporative concentration of salts, and thus increased osmotic stress of the littoral mat communities. To assess the cellular capacity to tolerate increasing osmolarity on physiology and cell membrane integrity, mat sections were exposed to a gradient of increasing salinities, and PAM measurements of in vivo chlorophyll fluorescence were made to assess changes in maximum quantum yield. The results showed that the mats were tolerant of up to a 46-fold increase in salinity. These features imply that cyanobacterial mats are resilient to ongoing climate change, and that in the

  9. Prevalence of thermotolerant Campylobacter spp. in farmed hares (Lepus europaeus).

    Science.gov (United States)

    Santaniello, Antonio; Dipineto, Ludovico; Veneziano, Vincenzo; Mariani, Ugo; Fioretti, Alessandro; Menna, Lucia Francesca

    2014-10-01

    Thermotolerant Campylobacter spp. were isolated from 118/240 (49.2%) rectal swabs from commercially farmed hares (Lepus europaeus) in southern Italy. Using multiplex PCR, Campylobacter coli was identified in 118/118 (100%) positive samples, while 17/118 (14.4%) positive samples were also positive for Campylobacter jejuni. Adult hares had a higher prevalence of infection with Campylobacter spp. than juvenile hares.

  10. Molecular Characterization of Non-flowering Perennial Sorghum spp. Hybrids

    OpenAIRE

    Jessup, R. W.; Whitmire, D. K.; Farrow, Z. L.; Burson, B. L.

    2011-01-01

    Aims: The goal of this study was to characterize recently identified, non-flowering, putative tetraploid Sorghum spp. hybrids utilizing bulked segregant analysis with SSRs and compare them to S. bicolor, S. halepense, and triploid putative Sorghum spp. hybrids. Confirmed species hybrids between S. bicolor and S. halepense would provide resources for investigating risks of invasiveness and transgene escape alongside potential for identifying novel perennial Sorghum feedstocks of value. Study d...

  11. Chemical and ecological control methods for Epitrix spp.

    OpenAIRE

    A. G. S. Cuthbertson

    2015-01-01

    Very little information exists in regards to the control options available for potato flea beetles, Epitrix spp. This short review covers both chemical and ecological options currently available for control of Epitrix spp. Synthetic pyrethroids are the weapon of choice for the beetles. However, the impetus in integrated pest management is to do timely (early-season) applications with something harsh which will give long-term protection at a time when there are not a lot of beneficials in the ...

  12. In vitro susceptibility of Bacillus spp. to selected antimicrobial agents.

    OpenAIRE

    1988-01-01

    Although often dismissed as contaminants when isolated from blood cultures, Bacillus spp. are increasingly recognized as capable of causing serious systemic infections. As part of a clinical-microbiological study, 89 strains of Bacillus spp. isolated from clinical blood cultures between 1981 and 1985 had their species determined and were tested for antimicrobial agent susceptibility to 18 antibiotics. Species of isolates were determined by the API 50CH and API 20E systems. Bacillus cereus (54...

  13. Prevalence of Demodex spp among alcohol-dependent patients

    OpenAIRE

    Mehmet Hanifi Kokacya; Ozlem Aycan Kaya; Umit Sertan Copoglu; Sibel Elmacioglu

    2016-01-01

    Purpose: Demodex folliculorum and Demodex brevis are common ectoparasites found in humans and live on the pilosebaceous glands and hair follicles especially on the facial region. Chronic alcohol consumption can weaken immune system and cause more severe infections. Demodex spp is assumed to be more common in alcohol-dependent patients due to partial suppression of immune system and lack of good self-care. The present study aims to investigate the prevalence of Demodex spp. ectoparasite in alc...

  14. Cefotaxime resistance and outcome of Klebsiella spp bloodstream infection.

    Science.gov (United States)

    Ortega, M; Marco, F; Soriano, A; Almela, M; Martínez, J A; López, J; Pitart, C; Mensa, J

    2011-12-01

    We attempt to describe the epidemiology and outcome associated with cefotaxime-resistant (CTX-R) Klebsiella spp bacteraemia. Klebsiella spp bloodstream infection episodes prospectively collected through a blood culture surveillance programme from January 1991 to December 2008 in a single institution were analysed. A total of 910 monomicrobial episodes of Klebsiella spp bacteraemia were identified during the study period. The most important sources were from urinary tract infection, unknown sources, billiary focus and catheter related infection. There were 112 (12%) CTX-R isolates. Out of 112 isolates, 98 were CTX-R by Extended-Spectrum β-Lactamase production. Shock on presentation and mortality were significantly more frequent in CTX-R than in CTX susceptible isolates. Inappropriate empirical therapy was received in 50 (45%) cases in the CTX-R Klebsiella spp group (13 cases of death, 26%). Predictive factors associated with CTX-R Klebsiella spp isolate were: previous β-lactam therapy (OR = 4.16), nosocomial acquired bacteraemia (OR = 1.93), solid organ trasplantation (OR = 2.09) and shock (OR = 1.90). Independent risk factors associated with mortality in Klebsiella spp bacteraemia were: age (OR = 1.03), liver cirrhosis (OR = 2.63), ultimately or rapidly fatal prognosis of underlying disease (OR = 2.44), shock (OR = 8.60), pneumonia (OR = 4.96) or intraabdominal (OR = 3.85) source of bacteraemia and CTX-R isolate (OR = 4.63). Klebsiella spp is an important cause of bloodstream infection. CTX-R isolates have been increasing since 2000. CTX-R is an independent factor associated with mortality in Klebsiella spp bacteraemia.

  15. Brachiaria spp. poisoning of ruminants in Brazil

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    B. Riet-Correa

    2011-03-01

    Full Text Available Brachiaria species are the most important grasses for cattle production in Brazil. However, a limiting factor for the use of Brachiaria spp. is their toxicity. Most outbreaks of hepatogenous photosensitization are caused by B. decumbens; however B. brizantha, B. humidicola and B. ruziziensis can also cause poisoning. The poisoning affects cattle, sheep, goats and buffalo. Sheep are more susceptible than other animal species and the young are more susceptible than adults. There are differences in susceptibility among animals of the same species and it has been suggested that this resistance is genetic. Also has been suggested that buffalo and probably some sheep are resilient, i.e. when poisoned these animals have histologic lesions and high GGT serum concentrations, but do not show clinical signs. In general, saponin concentrations are higher in growing plants, but outbreaks occur all over the year, probably due to unexplained rise in saponin concentration in the plant. A clinical syndrome of progressive weight loss and death, without photosensitization, has been reported in cattle poisoned by B. decumbens. Main preventive measures are based on the selection of resistant or resilient animals and on the development of Brachiaria species or varieties with low saponin concentration.

  16. Aeromonas spp.: ubiquitous or specialized bugs?

    Science.gov (United States)

    Martino, Maria Elena; Fasolato, Luca; Montemurro, Filomena; Novelli, Enrico; Cardazzo, Barbara

    2014-04-01

    The genus Aeromonas comprises ubiquitous bacteria that are known to play several roles in the environment. These bacteria were first described as fish pathogens, but their presence was documented in other reservoirs, such as animals and humans. Today, these bacteria are described as emerging pathogens, but their effective role in human pathogenicity is still controversial. In addition, their taxonomy is heavily debated, as species distinction is often difficult to achieve. To study the interspecies relationships and to investigate their connection with the environment, a multilocus sequence typing scheme previously developed for Aeromonas spp. was applied to 258 strains, and the genetic data were analysed by population software. Sampling was a fundamental step, including several of the main sources of Aeromonas: fish, food products and human cases of disease. The objective was to characterize the isolates and to find potential associations among them according to the following: species, sharing of virulence factors, source and adaptation to a specific habitat. The strains were characterized and demonstrated exceptionally high nucleotide variability in the Aeromonas genus. Among the sampled sources, different species distributions were found, highlighting the occurrence of adaptation processes towards specific habitats.

  17. Biopharmaceutical potentials of Prosopis spp. (Mimosaceae, Leguminosa

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    Santhaseelan Henciya

    2017-01-01

    Full Text Available Prosopis is a commercially important plant genus, which has been used since ancient times, particularly for medicinal purposes. Traditionally, Paste, gum, and smoke from leaves and pods are applied for anticancer, antidiabetic, anti-inflammatory, and antimicrobial purposes. Components of Prosopis such as flavonoids, tannins, alkaloids, quinones, or phenolic compounds demonstrate potentials in various biofunctions, such as analgesic, anthelmintic, antibiotic, antiemetic, microbial antioxidant, antimalarial, antiprotozoal, antipustule, and antiulcer activities; enhancement of H+, K+, ATPases; oral disinfection; and probiotic and nutritional effects; as well as in other biopharmaceutical applications, such as binding abilities for tablet production. The compound juliflorine provides a cure in Alzheimer disease by inhibiting acetylcholine esterase at cholinergic brain synapses. Some indirect medicinal applications of Prosopis spp. are indicated, including antimosquito larvicidal activity, chemical synthesis by associated fungal or bacterial symbionts, cyanobacterial degradation products, “mesquite” honey and pollens with high antioxidant activity, etc. This review will reveal the origins, distribution, folk uses, chemical components, biological functions, and applications of different representatives of Prosopis.

  18. Sylvatic Trichinella spp. infection in Finland.

    Science.gov (United States)

    Airas, Niina; Saari, Seppo; Mikkonen, Taina; Virtala, Anna-Maija; Pellikka, Jani; Oksanen, Antti; Isomursu, Marja; Kilpelä, Seija-Sisko; Lim, Chae W; Sukura, Antti

    2010-02-01

    Although human infections caused by Trichinella sp. have not been reported in Finland for several decades and Trichinella sp. infection in pork has become virtually extinct in the last decade, sylvatic Trichinella spp. infection is still highly prevalent in Finland. Muscle digestion of 2,483 carnivorous wild animals from 9 host species during 1999-2005 showed 617 positive animals (24.8%). Molecular identification from 328 larval isolates revealed 4 different endemic Trichinella species, i.e., T. nativa, T. spiralis, T. britovi, and T. pseudospiralis. Seven percent of the infected animals carried mixed infections. Trichinella nativa was the most common species (74%), but T. spiralis was identified in 12%, T. britovi in 6%, and T. pseudospiralis in 1% of the animals. Host species showed different sample prevalence and Trichinella species distribution. Geographical distribution also varied, with the southern part of the country having significantly higher percentages than the northern part. Infection density was dependent on both the infecting Trichinella species and the host species. Trichinella spiralis was discovered in areas with no known domestic infection cases, indicating that it can also occur in the sylvatic cycle. Raccoon dogs and red foxes are the most important reservoir animals for T. spiralis , as well as for the sylvatic Trichinella species in Finland.

  19. Recovery of Arcobacter spp. from nonlivestock species.

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    Wesley, Irene V; Schroeder-Tucker, Linda

    2011-09-01

    The genus Arcobacter encompasses campylobacter-like organisms that grow in air at 25 degrees C. Arcobacter has been detected or isolated from clinically healthy livestock as well as aborted fetuses and has been presumptively identified as either Campylobacter or Leptospira, based on its growth in selective semisolid media. Because reports from nonlivestock species are limited, this study examined nine presumptive isolates of Arcobacter spp. from an alpaca (Vicugna pacos), black rhinoceros (Diceros bicornis), white rhinoceros (Ceratotherium simum), gorilla (Troglodytes gorilla), gazelle (Eudorcas thomsoni), rhea (Rhea americana), and aborted equine fetuses. Seven of these nine phenotypically identified isolates of Arcobacter were confirmed by a multiplex polymerase chain reaction assay. The remaining two isolates were subsequently identified as Arcobacter skirrowii (Case 5) and Campylobacter jejuni (Case 6) by sequence analysis of a 527-base pair fragment of the 16S rRNA gene. Together, these cases underscore the challenges to a clinical laboratory of identifying Arcobacter in cases which mimic vibrionic abortion or leptospirosis.

  20. Susceptibilidad de genotipos de Solanum spp. al nematodo causante del nudo radical Meloidogyne spp. (chitwood

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    Gelpud Chaves Cristian

    2011-03-01

    Full Text Available

    El cultivo del lulo (Solanum quitoense L. presenta una disminución en su productividad, debido al ataque de patógenos como el nematodo del nudo radical Meloidogyne  spp., en el Departamento  de Nariño (Colombia, se han reportado incidencias cercanas al 79%, y pérdidas del 50%.   En la presente investigación, se colectaron 45 genotipos de (Solanum quitoense  L. en los Departamentos  de Nariño  y Putumayo  y 4 genotipos  silvestres  (S. mammosum, S. hirtum,       S. marginatum  y S. umbellatum buscando fuentes de resistencia al nematodo. Se inocularon 9 plantas de cada genotipo de dos meses de edad con 10000 huevos de Meloidogyne spp., dejando tres testigos por cada material. Las variables evaluadas fueron: altura de planta, severidad, incidencia, peso fresco (tallo y raíz y especies prevalentes de Meloidogyne spp. Se hizo una clasificación de genotipos mediante escala de resistencia y regresión entre la severidad y las demás variables para establecer el efecto de Meloidogyne spp. sobre los genotipos de planta. Los resultados mostraron 100% de incidencia del nematodo en  todos  los  genotipos,  2.04%  genotipos  resistentes,  34.7%  moderadamente  resistentes, 42.8% moderadamente susceptibles, 18.3% susceptibles, y 2.04% altamente susceptibles. El genotipo SQbr05 resistente, no se vio afectado por la severidad, al contrario SQbc04 genotipo susceptible, mostró reducciones significativas en peso fresco de tallo y raIz, (R2 = 0.71 y 0.98,el genotipo silvestre (S. mammosum es altamente susceptible, Meloidogyne incognita presentó 55.31% de presencia. El genotipo SQbr05 es promisorio para ser evaluado en campo.