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Sample records for beggiatoa species mat

  1. Lipid biomarkers and carbon isotope signatures of a microbial (Beggiatoa) mat associated with gas hydrates in the gulf of Mexico.

    Science.gov (United States)

    Zhang, Chuanlun L; Huang, Zhiyong; Cantu, James; Pancost, Richard D; Brigmon, Robin L; Lyons, Timothy W; Sassen, Roger

    2005-04-01

    White and orange mats are ubiquitous on surface sediments associated with gas hydrates and cold seeps in the Gulf of Mexico. The goal of this study was to determine the predominant pathways for carbon cycling within an orange mat in Green Canyon (GC) block GC 234 in the Gulf of Mexico. Our approach incorporated laser-scanning confocal microscopy, lipid biomarkers, stable carbon isotopes, and 16S rRNA gene sequencing. Confocal microscopy showed the predominance of filamentous microorganisms (4 to 5 mum in diameter) in the mat sample, which are characteristic of Beggiatoa. The phospholipid fatty acids extracted from the mat sample were dominated by 16:1omega7c/t (67%), 18:1omega7c (17%), and 16:0 (8%), which are consistent with lipid profiles of known sulfur-oxidizing bacteria, including Beggiatoa. These results are supported by the 16S rRNA gene analysis of the mat material, which yielded sequences that are all related to the vacuolated sulfur-oxidizing bacteria, including Beggiatoa, Thioploca, and Thiomargarita. The delta13C value of total biomass was -28.6 per thousand; those of individual fatty acids were -29.4 to -33.7 per thousand. These values suggested heterotrophic growth of Beggiatoa on organic substrates that may have delta13C values characteristic of crude oil or on their by-products from microbial degradation. This study demonstrated that integrating lipid biomarkers, stable isotopes, and molecular DNA could enhance our understanding of the metabolic functions of Beggiatoa mats in sulfide-rich marine sediments associated with gas hydrates in the Gulf of Mexico and other locations. PMID:15812044

  2. Two new Beggiatoa species inhabiting marine mangrove sediments in the Caribbean.

    Directory of Open Access Journals (Sweden)

    Maïtena R N Jean

    Full Text Available Beggiatoaceae, giant sulphur-oxidizing bacteria, are well known to occur in cold and temperate waters, as well as hydrothermal vents, where they form dense mats on the floor. However, they have never been described in tropical marine mangroves. Here, we describe two new species of benthic Beggiatoaceae colonizing a marine mangrove adjacent to mangrove roots. We combined phylogenetic and lipid analysis with electron microscopy in order to describe these organisms. Furthermore, oxygen and sulphide measurements in and ex situ were performed in a mesocosm to characterize their environment. Based on this, two new species, Candidatus Maribeggiatoa sp. and Candidatus Isobeggiatoa sp. inhabiting tropical marine mangroves in Guadeloupe were identified. The species identified as Candidatus Maribeggiatoa group suggests that this genus could harbour a third cluster with organisms ranging from 60 to 120 μm in diameter. This is also the first description of an Isobeggiatoa species outside of Arctic and temperate waters. The multiphasic approach also gives information about the environment and indications for the metabolism of these bacteria. Our study shows the widespread occurrence of members of Beggiatoaceae family and provides new insight in their potential role in shallow-water marine sulphide-rich environments such as mangroves.

  3. Use of reduced sulfur compounds by Beggiatoa sp.

    OpenAIRE

    Nelson, D. C.; Castenholz, R W

    1981-01-01

    A strain of Beggiatoa cf. leptomitiformis (OH-75-B, clone 2a) was isolated which is unique among reported strains in its ability to deposit internal sulfur granules from thiosulfate. It also deposited these characteristic granules (as all BEggiatoa species do) from sulfide. In cultures where growth was limited by exhaustion of organic substrates, these granules generally comprised about 20% of the total cell weight. With medium containing acetate and thiosulfate, no measurable utilization of ...

  4. Organic Nutrition of Beggiatoa sp

    OpenAIRE

    1981-01-01

    Culture OH-75-B of Beggiatoa sp. differed significantly from any described previously in its utilization of organic carbon and reduced sulfur compounds. It deposited internal sulfur granules characteristic of Beggiatoa sp. with either sulfide or thiosulfate in the medium. This strain (OH-75-B, clone 2a) could be grown in agitated liquid cultures on mineral medium with acetate as the only source of organic carbon. The resultant growth yields and rates were comparable to those for typical heter...

  5. Oxidation of Molecular Hydrogen by a Chemolithoautotrophic Beggiatoa Strain

    Science.gov (United States)

    2016-01-01

    ABSTRACT A chemolithoautotrophic strain of the family Beggiatoaceae, Beggiatoa sp. strain 35Flor, was found to oxidize molecular hydrogen when grown in a medium with diffusional gradients of oxygen, sulfide, and hydrogen. Microsensor profiles and rate measurements suggested that the strain oxidized hydrogen aerobically when oxygen was available, while hydrogen consumption under anoxic conditions was presumably driven by sulfur respiration. Beggiatoa sp. 35Flor reached significantly higher biomass in hydrogen-supplemented oxygen-sulfide gradient media, but hydrogen did not support growth of the strain in the absence of reduced sulfur compounds. Nevertheless, hydrogen oxidation can provide Beggiatoa sp. 35Flor with energy for maintenance and assimilatory purposes and may support the disposal of internally stored sulfur to prevent physical damage resulting from excessive sulfur accumulation. Our knowledge about the exposure of natural populations of Beggiatoaceae to hydrogen is very limited, but significant amounts of hydrogen could be provided by nitrogen fixation, fermentation, and geochemical processes in several of their typical habitats such as photosynthetic microbial mats and submarine sites of hydrothermal fluid flow. IMPORTANCE Reduced sulfur compounds are certainly the main electron donors for chemolithoautotrophic Beggiatoaceae, but the traditional focus on this topic has left other possible inorganic electron donors largely unexplored. In this paper, we provide evidence that hydrogen oxidation has the potential to strengthen the ecophysiological plasticity of Beggiatoaceae in several ways. Moreover, we show that hydrogen oxidation by members of this family can significantly influence biogeochemical gradients and therefore should be considered in environmental studies. PMID:26896131

  6. Macroalgal mats and species abundance: a field experiment

    Science.gov (United States)

    Hull, S. C.

    1987-11-01

    A field experiment was carried out whereby the density of macroalgae ( Enteromorpha spp.) was manipulated and the resultant changes in sediment infaunal density were monitored. Four densities of Enteromorpha spp. were used: 0,0·3, 1, and 3 kg FW m -2, corresponding to control, low-, medium-, and high-density plots. The experiment ran from May to October 1985 and was sampled on three occasions. By July, the density of Corophium volutator was reduced at all weed levels when compared to control plots, whereas densities of Hydrobia ulvae, Macoma balthica, Nereis diversicolor, and Capitella capitata, all increased. Samples taken in October when the weed mats were buried in the sediment showed fewer differences than in July. Macoma, Nereis, and Capitella were still significantly more abundant at medium and high weed densities. Corophium showed no significant treatment effect. There was, however, a highly significant difference in population size structure for Corophium. Measurements of sediment redox potential and silt content under medium- and high-density plots revealed rapid anoxia with a significant increase in siltation.

  7. Growth and nitrate reduction of Beggiatoa filaments studied in enrichment cultures

    DEFF Research Database (Denmark)

    Kamp, Anja

    In this thesis, several aspects of the gliding, filamentous, colourless sulphur bacteria Beggiatoa were investigated. The first part of this thesis addressed the growth mode, breakage of filaments for multiplication, and movement directions of filaments of Beggiatoa. Marine Beggiatoa were enriche...

  8. Motility patterns of filamentous sulfur bacteria, Beggiatoa spp

    DEFF Research Database (Denmark)

    Dunker, Rita; Røy, Hans; Kamp, Anja;

    2011-01-01

    The large sulfur bacteria, Beggiatoa spp., live on the oxidation of sulfide with oxygen or nitrate, but avoid high concentrations of both sulfide and oxygen. As gliding filaments, they rely on reversals in the gliding direction to find their preferred environment, the oxygen–sulfide interface...

  9. Motility patterns of filamentous sulfur bacteria, Beggiatoa spp

    DEFF Research Database (Denmark)

    Dunker, Rita; Røy, Hans; Kamp, Anja;

    2011-01-01

    The large sulfur bacteria, Beggiatoa spp., live on the oxidation of sulfide with oxygen or nitrate, but avoid high concentrations of both sulfide and oxygen. As gliding filaments, they rely on reversals in the gliding direction to find their preferred environment, the oxygen–sulfide interface. We...

  10. Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment

    DEFF Research Database (Denmark)

    Preisler, André; de Beer, Dirk; Lichtschlag, Anna;

    2007-01-01

    gradient and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa...... and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa...

  11. Video-supported analysis of Beggiatoa filament growth, breakage, and movement

    DEFF Research Database (Denmark)

    Kamp, Anja; Røy, Hans; Schulz-Vogt, Heide N.

    2008-01-01

    A marine Beggiatoa sp. was cultured in semi-solid agar with opposing oxygen-sulfide gradients. Growth pattern, breakage of filaments for multiplication, and movement directions of Beggiatoa filaments in the transparent agar were investigated by time-lapse video recording. The initial doubling time...

  12. Discovery of a modified tetrapolar sexual cycle in Cryptococcus amylolentus and the evolution of MAT in the Cryptococcus species complex.

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    Keisha Findley

    Full Text Available Sexual reproduction in fungi is governed by a specialized genomic region called the mating-type locus (MAT. The human fungal pathogenic and basidiomycetous yeast Cryptococcus neoformans has evolved a bipolar mating system (a, α in which the MAT locus is unusually large (>100 kb and encodes >20 genes including homeodomain (HD and pheromone/receptor (P/R genes. To understand how this unique bipolar mating system evolved, we investigated MAT in the closely related species Tsuchiyaea wingfieldii and Cryptococcus amylolentus and discovered two physically unlinked loci encoding the HD and P/R genes. Interestingly, the HD (B locus sex-specific region is restricted (∼2 kb and encodes two linked and divergently oriented homeodomain genes in contrast to the solo HD genes (SXI1α, SXI2a of C. neoformans and Cryptococcus gattii. The P/R (A locus contains the pheromone and pheromone receptor genes but has expanded considerably compared to other outgroup species (Cryptococcus heveanensis and is linked to many of the genes also found in the MAT locus of the pathogenic Cryptococcus species. Our discovery of a heterothallic sexual cycle for C. amylolentus allowed us to establish the biological roles of the sex-determining regions. Matings between two strains of opposite mating-types (A1B1×A2B2 produced dikaryotic hyphae with fused clamp connections, basidia, and basidiospores. Genotyping progeny using markers linked and unlinked to MAT revealed that meiosis and uniparental mitochondrial inheritance occur during the sexual cycle of C. amylolentus. The sexual cycle is tetrapolar and produces fertile progeny of four mating-types (A1B1, A1B2, A2B1, and A2B2, but a high proportion of progeny are infertile, and fertility is biased towards one parental mating-type (A1B1. Our studies reveal insights into the plasticity and transitions in both mechanisms of sex determination (bipolar versus tetrapolar and sexual reproduction (outcrossing versus inbreeding with

  13. Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex

    OpenAIRE

    Liu, F; Weir, B S; Damm, U.; Crous, P.W.; Wang, Y; Liu, B.; Wang, M.(Central China Normal University, Wuhan, China); Zhang, M.; L. Cai

    2015-01-01

    We investigated the phylogenetic diversity of 144 Colletotrichum isolates associated with symptomatic and asymptomatic tissues of Camellia sinensis and other Camellia spp. from seven provinces in China (Fujian, Guizhou, Henan, Jiangxi, Sichuan, Yunnan, Zhejiang), and seven isolates obtained from other countries, including Indonesia, UK, and the USA. Based on multi-locus (ACT, ApMat, CAL, GAPDH, GS, ITS, TUB2) phylogenetic analyses and phenotypic characters, 11 species were distinguished, incl...

  14. Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex.

    Science.gov (United States)

    Liu, F; Weir, B S; Damm, U; Crous, P W; Wang, Y; Liu, B; Wang, M; Zhang, M; Cai, L

    2015-12-01

    We investigated the phylogenetic diversity of 144 Colletotrichum isolates associated with symptomatic and asymptomatic tissues of Camellia sinensis and other Camellia spp. from seven provinces in China (Fujian, Guizhou, Henan, Jiangxi, Sichuan, Yunnan, Zhejiang), and seven isolates obtained from other countries, including Indonesia, UK, and the USA. Based on multi-locus (ACT, ApMat, CAL, GAPDH, GS, ITS, TUB2) phylogenetic analyses and phenotypic characters, 11 species were distinguished, including nine well-characterised species (C. alienum, C. boninense, C. camelliae, C. cliviae, C. fioriniae, C. fructicola, C. gloeosporioides, C. karstii, C. sia-mense), and two novel species (C. henanense and C. jiangxiense). Of these, C. camelliae proved to be the most dominant and probably host specific taxon occurring on Camellia. An epitype is also designated for the latter species in this study. Colletotrichum jiangxiense is shown to be phylogenetically closely related to the coffee berry pathogen C. kahawae subsp. kahawae. Pathogenicity tests and the pairwise homoplasy index test suggest that C. jiangxiense and C. kahawae subsp. kahawae are two independent species. This study represents the first report of C. alienum and C. cliviae occurring on Camellia sinensis. In addition, our study demonstrated that the combined use of the loci ApMat and GS in a phylogenetic analysis is able to resolve all currently accepted species in the C. gloeosporioides species complex. PMID:26823629

  15. MAT 126 Ash Material - mat126dotcom

    OpenAIRE

    honey

    2015-01-01

    MAT 126 Entire Course For more course tutorials visit www.mat126.com   MAT 126 Week 1 DQ 1 MAT 126 Week 1 Quiz MAT 126 Week 1 Written Assignment (Arithmetic and geometric sequence) MAT 126 Week 2 DQ 1 MAT 126 Week 2 DQ 2 MAT 126 Week 2 Assignment  Is It Fat Free MAT 126 Week 2 Quiz MAT 126 Week 3 DQ 1 MAT 126 Week 3 DQ 2 MAT 126 Week 3 Assignment Quadratic Equations MAT 126 Week 3 Quiz MAT 126 Week 4 DQ 1 MAT 126 Week 4 DQ 2 MAT...

  16. Recombination does not hinder formation or detection of ecological species of Synechococcus inhabiting a hot spring cyanobacterial mat

    Directory of Open Access Journals (Sweden)

    Melanie Crystal Melendrez

    2016-01-01

    Full Text Available Recent studies of bacterial speciation have claimed to support the biological species concept—that reduced recombination is required for bacterial populations to diverge into species. This conclusion has been reached from the discovery that ecologically distinct clades show lower rates of recombination than that which occurs among closest relatives. However, these previous studies did not attempt to determine whether the more-rapidly recombining close relatives within the clades studied may also have diversified ecologically, without benefit of sexual isolation. Here we have measured the impact of recombination on ecological diversification within and between two ecologically distinct clades (A and B´ of Synechococcus in a hot spring microbial mat in Yellowstone National Park, using a cultivation-free, multi-locus approach. Bacterial artificial chromosome (BAC libraries were constructed from mat samples collected at 60°C and 65°C. Analysis of multiple linked loci near Synechococcus 16S rRNA genes showed little evidence of recombination between the A and B´ lineages, but a record of recombination was apparent within each lineage. Recombination and mutation rates within each lineage were of similar magnitude, but recombination had a somewhat greater impact on sequence diversity than mutation, as also seen in many other bacteria and archaea. Despite recombination within the A and B´ lineages, there was evidence of ecological diversification within each lineage. The algorithm Ecotype Simulation identified sequence clusters consistent with ecologically distinct populations (ecotypes, and several hypothesized ecotypes were distinct in their habitat associations and in their adaptations to different microenvironments. We conclude that sexual isolation is more likely to follow ecological divergence than to precede it. Thus, an ecology-based model of speciation appears more appropriate than the biological species concept for bacterial and archaeal

  17. The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park

    DEFF Research Database (Denmark)

    Becraft, Eric D.; Wood, Jason M.; Rusch, Douglas B.;

    2015-01-01

    and transcripts over a large number of habitat types in the Mushroom Spring microbial mat. Putative ecological species [putative ecotypes (PEs)], which were predicted by an evolutionary simulation based on the Stable Ecotype Model (Ecotype Simulation), exhibited distinct distributions relative to temperature...

  18. The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park

    Directory of Open Access Journals (Sweden)

    Eric Daniel Becraft

    2015-06-01

    Full Text Available Based on the Stable Ecotype Model, evolution leads to the divergence of ecologically distinct populations (e.g., with different niches and/or behaviors of ecologically interchangeable membership. In this study, pyrosequencing was used to provide deep sequence coverage of Synechococcus psaA genes and transcripts over a large number of habitat types in the Mushroom Spring microbial mat. Putative ecological species (putative ecotypes, which were predicted by an evolutionary simulation based on the Stable Ecotype Model (Ecotype Simulation, exhibited distinct distributions relative to temperature-defined positions in the effluent channel and vertical position in the upper 1 mm-thick mat layer. Importantly, in most cases variants predicted to belong to the same putative ecotype formed unique clusters relative to temperature and depth in the mat in canonical correspondence analysis, supporting the hypothesis that while the putative ecotypes are ecologically distinct, the members of each ecotype are ecologically homogeneous. Putative ecotypes responded differently to experimental perturbations of temperature and light, but the genetic variation within each putative ecotype was maintained as the relative abundances of putative ecotypes changed, further indicating that each population responded as a set of ecologically interchangeable individuals. Compared to putative ecotypes that predominate deeper within the mat photic zone, the timing of transcript abundances for selected genes differed for putative ecotypes that predominate in microenvironments closer to upper surface of the mat with spatiotemporal differences in light and O2 concentration. All of these findings are consistent with the hypotheses that Synechococcus species in hot spring mats are sets of ecologically interchangeable individuals that are differently adapted, that these adaptations control their distributions, and that the resulting distributions constrain the activities of the species

  19. Talking Mats

    DEFF Research Database (Denmark)

    2012-01-01

    Talking Mats are visualizations in the handy size of a set of cards used to support interviews with people with mental disabilities.......Talking Mats are visualizations in the handy size of a set of cards used to support interviews with people with mental disabilities....

  20. Sulfide induces phosphate release from polyphosphate in cultures of a marine Beggiatoa strain

    OpenAIRE

    Brock, Jörg; Schulz-Vogt, Heide N.

    2010-01-01

    Sulfur bacteria such as Beggiatoa or Thiomargarita have a particularly high capacity for storage because of their large size. In addition to sulfur and nitrate, these bacteria also store phosphorus in the form of polyphosphate. Thiomargarita namibiensis has been shown to release phosphate from internally stored polyphosphate in pulses creating steep peaks of phosphate in the sediment and thereby inducing the precipitation of phosphorus-rich minerals. Large sulfur bacteria populate sediments a...

  1. Filamentous sulfur bacteria of activated sludge: characterization of Thiothrix, Beggiatoa, and Eikelboom type 021N strains.

    OpenAIRE

    Williams, T. M.; Unz, R F

    1985-01-01

    Seventeen strains of filamentous sulfur bacteria were isolated in axenic culture from activated sludge mixed liquor samples and sulfide-gradient enrichment cultures. Isolation procedures involved plating a concentrated inoculum of washed filaments onto media containing sulfide or thiosulfate. The isolates were identified as Thiothrix spp., Beggiatoa spp., and an organism of uncertain taxonomic status, designated type 021N. All bacteria were gram negative, reduced nitrate, and formed long, mul...

  2. Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, noncultured, vacuolate sulfur bacteria.

    Science.gov (United States)

    Ahmad, Azeem; Kalanetra, Karen M; Nelson, Douglas C

    2006-06-01

    Within the last 10 years, numerous SSU rRNA sequences have been collected from natural populations of conspicuous, vacuolate, colorless sulfur bacteria, which form a phylogenetically cohesive cluster (large-vacuolate sulfur bacteria clade) in the gamma-Proteobacteria. Currently, this clade is composed of four named or de facto genera: all known Thioploca and Thiomargarita strains, all vacuolate Beggiatoa strains, and several strains of vacuolate, attached filaments, which bear a superficial similarity to Thiothrix. Some of these vacuolate bacteria accumulate nitrate for respiratory purposes. This clade encompasses the largest known prokaryotic cells (Thiomargarita namibiensis) and several strains that are important in the global marine sulfur cycle. Here, we report additional sequences from five pure culture strains of Beggiatoa spp., including the only two cultured marine strains (nonvacuolate), which firmly establish the root of this vacuolate clade. Each of several diverse metabolic motifs, including obligate and facultative chemolithoautotrophy, probable mixotrophy, and seemingly strict organoheterotrophy, is represented in at least one of the nonvacuolate strains that root the vacuolate clade. Because the genus designation Beggiatoa is interspersed throughout the vacuolate clade along with other recognized or de facto genera, the need for taxonomic revision is clear. PMID:16788728

  3. Filamentous sulfur bacteria of activated sludge: characterization of Thiothrix, Beggiatoa, and Eikelboom type 021N strains.

    Science.gov (United States)

    Williams, T M; Unz, R F

    1985-04-01

    Seventeen strains of filamentous sulfur bacteria were isolated in axenic culture from activated sludge mixed liquor samples and sulfide-gradient enrichment cultures. Isolation procedures involved plating a concentrated inoculum of washed filaments onto media containing sulfide or thiosulfate. The isolates were identified as Thiothrix spp., Beggiatoa spp., and an organism of uncertain taxonomic status, designated type 021N. All bacteria were gram negative, reduced nitrate, and formed long, multicellular trichomes with internal reserves of sulfur, volutin, and sudanophilic material. Thiothrix spp. formed rosettes and gonidia, and four of six strains were ensheathed. Type 021N organisms utilized glucose, lacked a sheath, and differed from Thiothrix spp. in several aspects of cellular and cultural morphology. Beggiatoa spp. lacked catalase and oxidase, and filaments were motile. Biochemical and physiological characterization of the isolates revealed important distinguishing features between the three groups of bacteria. Strain differences were most evident among the Thiothrix cultures. A comparison of the filamentous sulfur bacteria with freshwater strains of Leucothrix was made also. PMID:4004221

  4. Biogeochemistry of Microbial Mats

    Science.gov (United States)

    DesMarais, David J.; DeVincenizi, D. (Technical Monitor)

    2002-01-01

    The hierarchical organization of microbial ecosystems determines the rates of processes that shape Earth's environment, define the stage upon which major evolutionary events occurred, and create biosignatures in sediments and atmospheres. In cyanobacterial mats, oxygenic photosynthesis provides energy, organic substrates and oxygen to the ecosystem. Incident light changes with depth in the mat, both in intensity and spectral composition, and counteracting gradients of oxygen and sulfide shape the chemical microenvironment. A combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods and to various depths in the mat. Microliters produce hydrogen, small organic acids, nitrogen and sulfur species. Such compounds fuel a flow of energy and electrons in these ecosystems and thus shape interactions between groups of microorganisms. Coordinated observations of population distribution, abundance, and activity for an entire community are making fundamental questions in ecology accessible. These questions address those factors that sustain the remarkable diversity of microorganisms that are now being revealed by molecular techniques. These questions also target the processes that shape the various kinds of biosignatures that we will seek, both in ancient rocks from Earth and Mars, and in atmospheres of distant planets beyond our Solar System.

  5. Structure and function of natural sulphide-oxidizing microbial mats under dynamic input of light and chemical energy.

    Science.gov (United States)

    Klatt, Judith M; Meyer, Steffi; Häusler, Stefan; Macalady, Jennifer L; de Beer, Dirk; Polerecky, Lubos

    2016-04-01

    We studied the interaction between phototrophic and chemolithoautotrophic sulphide-oxidizing microorganisms in natural microbial mats forming in sulphidic streams. The structure of these mats varied between two end-members: one characterized by a layer dominated by large sulphur-oxidizing bacteria (SOB; mostly Beggiatoa-like) on top of a cyanobacterial layer (B/C mats) and the other with an inverted structure (C/B mats). C/B mats formed where the availability of oxygen from the water column was limited (45 μM) and continuously present. Here SOB were independent of the photosynthetic activity of cyanobacteria and outcompeted the cyanobacteria in the uppermost layer of the mat where energy sources for both functional groups were concentrated. Outcompetition of photosynthetic microbes in the presence of light was facilitated by the decoupling of aerobic chemolithotrophy and oxygenic phototrophy. Remarkably, the B/C mats conserved much less energy than the C/B mats, although similar amounts of light and chemical energy were available. Thus ecosystems do not necessarily develop towards optimal energy usage. Our data suggest that, when two independent sources of energy are available, the structure and activity of microbial communities is primarily determined by the continuous rather than the intermittent energy source, even if the time-integrated energy flux of the intermittent energy source is greater. PMID:26405833

  6. Polyphosphate storage in the family Beggiatoaceae with a focus on the species Beggiatoa alba

    OpenAIRE

    Havemeyer, Sandra

    2013-01-01

    Sulfur bacteria of the family Beggiatoaceae are of special interest with respect to the phosphorus cycle, because they can store large amounts of polyphosphate and are proposed to influence phosphorus sequestration in marine sediments (e.g. Schulz and Schulz, 2005). The aim of this thesis was to study different aspects of polyphosphate storage in members of the family Beggiatoaceae especially on a physiological but also on genomic level with a special focus on the heterotrophic freshwater str...

  7. The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park

    OpenAIRE

    Becraft, Eric D.; Jason M Wood; Rusch, Douglas B.; Kühl, Michael; Jensen, Sheila I.; Bryant, Donald A.; Roberts, David W.; Cohan, Frederick M.; Ward, David M.

    2015-01-01

    Based on the Stable Ecotype Model, evolution leads to the divergence of ecologically distinct populations (e.g., with different niches and/or behaviors) of ecologically interchangeable membership. In this study, pyrosequencing was used to provide deep sequence coverage of Synechococcus psaA genes and transcripts over a large number of habitat types in the Mushroom Spring microbial mat. Putative ecological species [putative ecotypes (PEs)], which were predicted by an evolutionary simulation ba...

  8. The heterothallic sugarbeet pathogen Cercospora beticola contains exon fragments of both MAT genes that are homogenized by concerted evolution

    NARCIS (Netherlands)

    Bolton, M.D.; Jonge, de R.; Inderbitzin, P.; Liu, Z.; Birla, K.; Peer, Van de Y.; Subbarao, K.; Thomma, B.P.H.J.; Secor, G.

    2014-01-01

    Dothideomycetes is one of the most ecologically diverse and economically important classes of fungi. Sexual reproduction in this group is governed by mating type (MAT) genes at the MAT1 locus. Self-sterile (heterothallic) species contain one of two genes at MAT1 (MAT1-1-1 or MAT1-2-1) and only isola

  9. The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light

    Directory of Open Access Journals (Sweden)

    Shane eNowack

    2015-06-01

    Full Text Available Closely related strains of thermophilic Synechococcus were cultivated from the microbial mats found in the effluent channels of Mushroom Spring, Yellowstone National Park (YNP. These strains have identical or nearly identical 16S rRNA sequences but are representative of separate, predicted putative ecotype populations, which were identified by using the more highly resolving psaA locus and which predominate at different vertical positions within the 1-mm-thick upper-green layer of the mat. Pyrosequencing confirmed that each strain contained a single, predominant psaA genotype. Strains differed in growth rate as a function of irradiance. A strain with a psaA genotype corresponding to a predicted putative ecotype that predominates near the mat surface grew fastest at high irradiances, whereas strains with psaA genotypes representative of predominant subsurface populations grew faster at low irradiance and exhibited greater sensitivity to abrupt shifts to high light. The high-light-adapted and low-light-adapted strains also exhibited differences in pigment content and the composition of the photosynthetic apparatus (photosystem ratio when grown under different light intensities. Cells representative of the different strains had similar morphologies under low-light conditions, but under high-light conditions, cells of low-light-adapted strains became elongated and formed short chains of cells. Collectively, the results presented here are consistent with the hypothesis that closely related, but distinct, ecological species of Synechococcus occupy different light niches in the Mushroom Spring microbial mat and acclimate differently to changing light environments.

  10. MAT FOR LEPTOSPIROSIS DIAGNOSIS

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    Esti Rahardianingtyas.

    2014-06-01

    Full Text Available Leptospirosis is a disease caused by bacterial infection leptospira interrogans.Leptospira bacteria is a spiral bacterium with solid strands with two flagella periplasmik.Septicaemic phase patient samples taken from the blood and cerebrospinal fluid, whereassamples taken at phase immune extracted from urine. The diagnosis of leptospirosis occurdirectly or indirectly. Diagnosis is done by directly isolate and identify the causative agents ofthe agent. Diagnosis is done indirectly by detecting specific antibodies from the patient's body.Gold Standard of the diagnosis of leptospirosis is MAT. Mat made by reacting antibodies toleptospira antigen. Positive results seen with clump formed.Key words: Leptospirosis, Leptospirosis Diagnostic, MAT (Microscopic Agglutination Test Leptospirosis merupakan penyakit yang disebabkan karena infeksi bakteri leptospirainterrogans. Bakteri leptospira merupakan bakteri spiral dengan untaian yang padat dengan duaflagella periplasmik. Sampel pasien pada fase septicaemic diambil dari darah dan cairanserebrospinal, sedangkan sampel yang diambil pada fase immune diambil dari urine. Diagnosisleptospirosis dilakukan secara langsung maupun tidak langsung. Diagnosis secara langsungdilakukan dengan cara mengisolasi agen penyebab dan mengidentifikasi agen tersebut. Diagnosissecara tidak langsung dilakukan dengan cara mendeteksi antibodi spesiflk dari dalam tubuhpasien. Gold Standart dari diagnosis leptospirosis adalah MAT. Mat dilakukan dengan caramereaksikan antibodi dengan antigen leptospira. Hasil positif dilihat dengan terbentuk gumpalanagglutinasiKata kunci: Leptospirosis, Leptospira, Leptospirosis Diagnosis.

  11. New universal matK primers for DNA barcoding angiosperms

    Institute of Scientific and Technical Information of China (English)

    Jing YU; Jian-Hua XUE; Shi-Liang ZHOU

    2011-01-01

    The chloroplast maturase K gene (matK) is one of the most variable coding genes of angiosperms and has been suggested to be a "barcode" for land plants. However, matK exhibits low amplification and sequencing rates due to low universality of currently available primers and mononucleotide repeats. To resolve these technical problems, we evaluated the entire matK region to find a region of 600-800 bp that is highly variable, represents the best of all matK regions with priming sites conservative enough to design universal primers, and avoids the mononucleotide repeats. After careful evaluation, a region in the middle was chosen and a pair of primers named natK472F and matK1248R was designed to amplify and sequence the matK fragment of approximately 776 bp. This region encompasses the most variable sites, represents the entire matK region best, and also exhibits high amplification rates and quality of sequences. The universality of this primer pair was tested using 58 species from 47 families of angiosperm plants. The primers showed a strong amplification (93.1%) and sequencing (92.6%)successes in the species tested. We propose that the new primers will solve, in part, the problems encountered when using matK and promote the adoption of matK as a DNA barcode for angiosperms.

  12. MAT 126 ASH Course Tutorial / Tutorialoutlet

    OpenAIRE

    stylia

    2015-01-01

    For more course tutorials visit www.tutorialoutlet.com   MAT 126 Week 1 DQ 1 (Ash) MAT 126 Week 1 Quiz (Ash) MAT 126 Week 1 Written Assignment (Arithmetic and geometric sequence) (Ash) MAT 126 Week 2 DQ 1 (Ash) MAT 126 Week 2 DQ 2 (Ash) MAT 126 Week 2 Assignment Is It Fat Free (Ash) MAT 126 Week 2 Quiz (Ash) MAT 126 Week 3 DQ 1 (Ash) MAT 126 Week 3 DQ 2 (Ash) MAT 126 Week 3 Assignment Quadratic Equations (Ash) MAT 126 Week 3 Quiz (Ash) MAT 126...

  13. Flat laminated microbial mat communities

    Science.gov (United States)

    Franks, Jonathan; Stolz, John F.

    2009-10-01

    Flat laminated microbial mats are complex microbial ecosystems that inhabit a wide range of environments (e.g., caves, iron springs, thermal springs and pools, salt marshes, hypersaline ponds and lagoons, methane and petroleum seeps, sea mounts, deep sea vents, arctic dry valleys). Their community structure is defined by physical (e.g., light quantity and quality, temperature, density and pressure) and chemical (e.g., oxygen, oxidation/reduction potential, salinity, pH, available electron acceptors and donors, chemical species) parameters as well as species interactions. The main primary producers may be photoautotrophs (e.g., cyanobacteria, purple phototrophs, green phototrophs) or chemolithoautophs (e.g., colorless sulfur oxidizing bacteria). Anaerobic phototrophy may predominate in organic rich environments that support high rates of respiration. These communities are dynamic systems exhibiting both spatial and temporal heterogeneity. They are characterized by steep gradients with microenvironments on the submillimeter scale. Diel oscillations in the physical-chemical profile (e.g., oxygen, hydrogen sulfide, pH) and species distribution are typical for phototroph-dominated communities. Flat laminated microbial mats are often sites of robust biogeochemical cycling. In addition to well-established modes of metabolism for phototrophy (oxygenic and non-oxygenic), respiration (both aerobic and anaerobic), and fermentation, novel energetic pathways have been discovered (e.g., nitrate reduction couple to the oxidation of ammonia, sulfur, or arsenite). The application of culture-independent techniques (e.g., 16S rRNA clonal libraries, metagenomics), continue to expand our understanding of species composition and metabolic functions of these complex ecosystems.

  14. MAT 221 ASH Course Tutorial / Tutorialoutlet

    OpenAIRE

    mirat

    2015-01-01

    For more course tutorials visit www.tutorialoutlet.com   MAT 221 Week 1 Assignment 1 Simplifying Expressions (Ash) MAT 221 Week 1 DQ 1 Evaluating Algebraic Expressions (Ash) MAT 221 Week 2 Assignment 2 Inequalities (Ash) MAT 221 Week 2 DQ 1 Formulas (Ash) MAT 221 Week 3 Assignment 3 Two-Variable Inequality (Ash) MAT 221 Week 3 DQ 1 Parallel and Perpendicular (Ash) MAT 221 Week 4 Assignment 4 Financial Polynomials (Ash) MAT 221 Week 4 DQ 1 Initial Investme...

  15. Stromatolites, Metals, Statistics and Microbial Mats: A Complex Interplay

    Science.gov (United States)

    Spear, J. R.

    2014-12-01

    Initially thought to be relatively 'simple' ecosystems for study, microbial mats have long been considered ideal for any number of research questions. Microbial mats can be found in any number of environments, both natural and manmade, and are typically dependent upon the physiochemical environment for their structure, maintenance and longevity. Ultimately, these and other parameters govern community whereby a microbial mat provides overall ecosystem services to their environment. On the edge of a hotspring in Yellowstone National Park we have found an active microbial mat community that can form a laminated, lithified, accretionary structure that is likely the best example of a living and growing stromatolite. In the outfall channel of the sulfidic Stinking Spring, Utah, we have found examples of both naturally occurring laminated and floating mats where the carbon flux is controlled by abiotic degassing of CO2 rather than metabolism. δ13C-bicarbonate uptake experiments reveal an autotrophic growth rate of 0 - 0.16%/day while δ13C-acetate reveals a higher heterotrophic growth rate of 0.03 - 0.65%/day, which highlights the role of heterotrophs in these mats. Similar growth experiments on Little Hot Creek, California laminated microbial mats reveal a trend for top-down microbial growth with similar microbial taxonomy and diversity to other mat-types. Of a curious note is that incubation experiments with Little Hot Creek mats reveals the importance of particular metals in mat structure and function. Statistically, alpha- and beta-diversity metrics are often used to characterize microbial communities in such systems, but from an analysis of a wastewater treatment system, Hill diversities can better interpret the effective number of species to produce an ecologically intuitive quantity to better understand a microbial mat ecosystem.

  16. Nitrogen cycle in microbial mats: completely unknown?

    Science.gov (United States)

    Coban, O.; Bebout, B.

    2015-12-01

    Microbial mats are thought to have originated around 3.7 billion years ago, most likely in the areas around submarine hydrothermal vents, which supplied a source of energy in the form of reduced chemical species from the Earth's interior. Active hydrothermal vents are also believed to exist on Jupiter's moon Europa, Saturn's moon Enceladus, and on Mars, earlier in that planet's history. Microbial mats have been an important force in the maintenance of Earth's ecosystems and the first photosynthesis was also originated there. Microbial mats are believed to exhibit most, if not all, biogeochemical processes that exist in aquatic ecosystems, due to the presence of different physiological groups of microorganisms therein. While most microbially mediated biogeochemical transformations have been shown to occur within microbial mats, the nitrogen cycle in the microbial mats has received very little study in spite of the fact that nitrogen usually limits growth in marine environments. We will present the first results in the determination of a complete nitrogen budget for a photosynthetic microbial mat. Both in situ sources and sinks of nitrogen in photosynthetic microbial mats are being measured using stable isotope techniques. Our work has a particular focus on recently described, but poorly understood, processes, e.g., anammox and dissimilatory nitrate reduction, and an emphasis on understanding the role that nitrogen cycling may play in generating biogenic nitrogen isotopic signatures and biomarker molecules. Measurements of environmental controls on nitrogen cycling should offer insight into the nature of co-evolution of these microbial communities and their planets of origin. Identifying the spatial (microscale) as well as temporal (diel and seasonal) distribution of nitrogen transformations, e.g., rates of nitrification and denitrification, within mats, particularly with respect to the distribution of photosynthetically-produced oxygen, is anticipated. The results

  17. Chlorophyll and carotenoid pigments in solar saltern microbial mats

    Science.gov (United States)

    Villanueva, Joan; Grimalt, Joan O.; de Wit, Rutger; Keely, Brendan J.; Maxwell, James R.

    1994-11-01

    The distributions of carotenoids, chlorophylls, and their degradation products have been studied in two microbial mat systems developed in the calcite and calcite/gypsum evaporite domains of a solar saltern system. Phormidium valderianum and Microcoleus chthonoplastes are the dominant cyanobacterial species, respectively, and large amounts of Chloroflexus-like bacteria occur in the carbonate/gypsum mat. In both systems, the major pigments are chlorophyll a, zeaxanthin, β-carotene and myxoxanthophyll, which originate from these mat-building cyanobacteria. This common feature contrasts with differences in other pigments that are specific for each mat community. Thus, chlorophyll c and fucoxanthin, reflecting diatom inputs, are only found in the calcite mat, whereas the calcite/gypsum mat contains high concentrations of bacteriochlorophylls c produced by the multicellular green filamentous bacteria. In both cases, the depth concentration profiles (0-30 and 0-40 mm) show a relatively good preservation of the cyanobacterial carotenoids, zeaxanthin, β-carotene, myxoxanthophyll, and echinenone. This contrasts with the extensive biodegradation of cyanobacterial remains observed microscopically. Fucoxanthin in the calcite mat is also transformed at a faster rate than the cyanobacterial carotenoids. Chlorophyll a, the major pigment in both mats, exhibits different transformation pathways. In the calcite/gypsum mat, it is transformed via C-13 2 carbomethoxy defunctionalization prior to loss of the phytyl chain, leading to the formation of pyrophaeophytin a and, subsequently, pyrophaeophorbide a. On the other hand, the occurrence of the enzyme chlorophyllase, attributed to diatoms in the calcite mat, gives rise to extensive phytyl hydrolysis, with the formation of chlorophyllide a, pyrophaeophorbide a and, in minor proportion, phaeophorbide a. Studies of the sources of the photosynthetic pigments and of their transformation pathways in such simplified ecosystems provide a

  18. Physiological and Metagenomic Analyses of Microbial Mats Involved in Self-Purification of Mine Waters Contaminated with Heavy Metals

    Science.gov (United States)

    Drewniak, Lukasz; Krawczyk, Pawel S.; Mielnicki, Sebastian; Adamska, Dorota; Sobczak, Adam; Lipinski, Leszek; Burec-Drewniak, Weronika; Sklodowska, Aleksandra

    2016-01-01

    Two microbial mats found inside two old (gold and uranium) mines in Zloty Stok and Kowary located in SW Poland seem to form a natural barrier that traps heavy metals leaking from dewatering systems. We performed complex physiological and metagenomic analyses to determine which microorganisms are the main driving agents responsible for self-purification of the mine waters and identify metabolic processes responsible for the observed features. SEM and energy dispersive X-ray microanalysis showed accumulation of heavy metals on the mat surface, whereas, sorption experiments showed that neither microbial mats were completely saturated with heavy metals present in the mine waters, indicating that they have a large potential to absorb significant quantities of metal. The metagenomic analysis revealed that Methylococcaceae and Methylophilaceae families were the most abundant in both communities, moreover, it strongly suggest that backbones of both mats were formed by filamentous bacteria, such as Leptothrix, Thiothrix, and Beggiatoa. The Kowary bacterial community was enriched with the Helicobacteraceae family, whereas the Zloty Stok community consist mainly of Sphingomonadaceae, Rhodobacteraceae, and Caulobacteraceae families. Functional (culture-based) and metagenome (sequence-based) analyses showed that bacteria involved in immobilization of heavy metals, rather than those engaged in mobilization, were the main driving force within the analyzed communities. In turn, a comparison of functional genes revealed that the biofilm formation and heavy metal resistance (HMR) functions are more desirable in microorganisms engaged in water purification than the ability to utilize heavy metals in the respiratory process (oxidation-reduction). These findings provide insight on the activity of bacteria leading, from biofilm formation to self-purification, of mine waters contaminated with heavy metals. PMID:27559332

  19. Molecular ecology of microbial mats

    NARCIS (Netherlands)

    Bolhuis, H.; Cretoiu, M.S.; Stal, L.J.

    2014-01-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep

  20. Auspicious tatami mat arrangements

    CERN Document Server

    Erickson, Alejandro; Schurch, Mark; Woodcock, Jennifer

    2011-01-01

    An \\emph{auspicious tatami mat arrangement} is a tiling of a rectilinear region with two types of tiles, $1 \\times 2$ tiles (dimers) and $1 \\times 1$ tiles (monomers). The tiles must cover the region and satisfy the constraint that no four corners of the tiles meet; such tilings are called \\emph{tatami tilings}. The main focus of this paper is when the rectilinear region is a rectangle. We provide a structural characterization of rectangular tatami tilings and use it to prove that the tiling is completely determined by the tiles that are on its border. We prove that the number of tatami tilings of an $n \\times n$ square with $n$ monomers is $n2^{n-1}$. We also show that, for fixed-height, the generating function for the number of tatami tilings of a rectangle is a rational function, and outline an algorithm that produces the generating function.

  1. Modeling benthic–pelagic nutrient exchange processes and porewater distributions in a seasonally hypoxic sediment: evidence for massive phosphate release by Beggiatoa?

    Directory of Open Access Journals (Sweden)

    K. Wallmann

    2013-02-01

    Full Text Available This study presents benthic data from 12 samplings from February to December 2010 in a 28 m deep channel in the southwest Baltic Sea. In winter, the distribution of solutes in the porewater was strongly modulated by bioirrigation which efficiently flushed the upper 10 cm of sediment, leading to concentrations which varied little from bottom water values. Solute pumping by bioirrigation fell sharply in the summer as the bottom waters became severely hypoxic (2. At this point the giant sulfide-oxidizing bacteria Beggiatoa was visible on surface sediments. Despite an increase in O2 following mixing of the water column in November, macrofauna remained absent until the end of the sampling. Contrary to expectations, metabolites such as dissolved inorganic carbon, ammonium and hydrogen sulfide did not accumulate in the upper 10 cm during the hypoxic period when bioirrigation was absent, but instead tended toward bottom water values. This was taken as evidence for episodic bubbling of methane gas out of the sediment acting as an abiogenic irrigation process. Porewater–seawater mixing by escaping bubbles provides a pathway for enhanced nutrient release to the bottom water and may exacerbate the feedback with hypoxia. Subsurface dissolved phosphate (TPO4 peaks in excess of 400 μM developed in autumn, resulting in a very large diffusive TPO4 flux to the water column of 0.7 ± 0.2 mmol m−2 d−1. The model was not able to simulate this TPO4 source as release of iron-bound P (Fe–P or organic P. As an alternative hypothesis, the TPO4 peak was reproduced using new kinetic expressions that allow Beggiatoa to take up porewater TPO4 and accumulate an intracellular P pool during periods with oxic bottom waters. TPO4 is then released during hypoxia, as previous published results with sulfide-oxidizing bacteria indicate. The TPO4 added to the porewater over the year by organic P and Fe–P is recycled through Beggiatoa, meaning that no additional source of

  2. Modeling benthic-pelagic nutrient exchange processes and porewater distributions in a seasonally-hypoxic sediment: evidence for massive phosphate release by Beggiatoa?

    Directory of Open Access Journals (Sweden)

    K. Wallmann

    2012-08-01

    Full Text Available This study presents benthic data from 12 samplings from February to December 2010 in a 2 m deep channel in the southwest Baltic Sea. In winter, the distribution of solutes in the porewater was strongly modulated by bioirrigation which efficiently flushed the upper 1 cm of sediment, leading to concentrations which varied little from bottom water values. Solute pumping by bioirrigation fell sharply in summer as the bottom waters became severely hypoxic (2. At this point the giant sulfide-oxidizing bacteria Beggiatoa was visible on surface sediments. Despite an increase in O2following mixing of the water column in November, macrofauna remained absent until the end of the sampling. Contrary to expectations, metabolites such as dissolved inorganic carbon, ammonium and hydrogen sulfide did not accumulate in the porewater during the hypoxic period when bioirrigation was absent, but instead tended toward bottom water values. This was taken as evidence for episodic bubbling of methane gas out of the sediment acting as an abiogenic irrigation process. Escaping bubble may provide a pathway for enhanced nutrient release to the bottom water and exacerbate the feedbacks with hypoxia. Subsurface dissolved phosphate (TPO4 peaks in excess of 400 μM developed in autumn resulting in a very large diffusive TPO4 flux to the water column of 0.7 ± 0.2 mmol m−2 d−1. The model was not able to simulate this TPO4 source as release of iron-bound P (Fe–P or organic P. As an alternative hypothesis, the TPO4 peak was reproduced using new kinetic expressions that allow Beggiatoa to take up porewater TPO4 and accumulate an intracellular P pool during periods with oxic bottom waters. TPO4 is then released during hypoxia, as previous published results with sulfide-oxidizing bacteria indicate. The TPO4 added to the porewater over the year by organic P and Fe–P is recycled though Beggiatoa, meaning that no additional source of TPO4 is needed to explain the TPO4 peak

  3. Water flow and solute transport in floating fen root mats

    Science.gov (United States)

    Stofberg, Sija F.; EATM van der Zee, Sjoerd

    2015-04-01

    Floating fens are valuable wetlands, found in North-Western Europe, that are formed by floating root mats when old turf ponds are colonized by plants. These terrestrialization ecosystems are known for their biodiversity and the presence of rare plant species, and the root mats reveal different vegetation zones at a small scale. The vegetation zones are a result of strong gradients in abiotic conditions, including groundwater dynamics, nutrients and pH. To prevent irreversible drought effects such as land subsidence and mineralization of peat, water management involves import of water from elsewhere to maintain constant surface water levels. Imported water may have elevated levels of salinity during dry summers, and salt exposure may threaten the vegetation. To assess the risk of exposure of the rare plant species to salinity, the hydrology of such root mats must be understood. Physical properties of root mats have scarcely been investigated. We have measured soil characteristics, hydraulic conductivity, vertical root mat movement and groundwater dynamics in a floating root mat in the nature reserve Nieuwkoopse Plassen, in the Netherlands. The root mat mostly consists of roots and organic material, in which the soil has a high saturated water content, and strongly varies in its stage of decomposition. We have found a distinct negative correlation between degree of decomposition and hydraulic conductivity, similar to observations for bogs in the literature. Our results show that the relatively young, thin edge of the root mat that colonizes the surface water has a high hydraulic conductivity and floats in the surface water, resulting in very small groundwater fluctuations within the root mat. The older part of the root mat, that is connected to the deeper peat layers is hydrologically more isolated and the material has a lower conductivity. Here, the groundwater fluctuates strongly with atmospheric forcing. The zones of hydraulic properties and vegetation, appear to

  4. MAT 222 ASH Course Tutorial / Tutorialoutlet

    OpenAIRE

    mirat

    2015-01-01

    For more course tutorials visit www.tutorialoutlet.com   MAT 222 Week 1 Solving Proportions (Ash) MAT 222 Week 1 DQ 1 Can't Cancel Terms (Ash) MAT 222 Week 2 DQ 1 One-Variable Compound Inequalities (Ash) MAT 222 Week 2 Two-Variable Inequalities (Ash) MAT 222 Week 3 DQ 1 Simplifying Radicals (Ash) MAT 222 Week 3 Real World Radical Formulas (Ash) MAT 222 Week 4 DQ 1 Solving Quadratic Equations (Ash) MAT 222 Week 4 Real World Quadratic Functions (Ash) ...

  5. High universality of matK primers for barcoding gymnosperms

    Institute of Scientific and Technical Information of China (English)

    Yan LI; Lian-Ming GAO; RAM C.POUDEL; De-Zhu Li; Alan FORREST

    2011-01-01

    DNA barcoding is a tool to provide rapid and accurate taxonomic identification using a standard DNA region. A two-marker combination of rnatK+rbcL was formally proposed as the core barcode for land plants by the Consortium for the Barcode of Life Plant Working Group. However, there are currently no barcoding primers for matK showing high universality in gymnosperms. We used 57 gymnosperm species representing 40 genera, 11families and four subclasses to evaluate the universality of nine candidate matK primers and one rbcL primer in this study. Primer (1F/724R) of rbcL is proposed here as a universal primer for gymnosperms due to high universality. One of the nine candidate matK primers (Gym_F1A/Gym_R1A) is proposed as the best "universal" matK primer for gynnosperms because of high polymerase chain reaction success and routine generation of high quality bidirectional sequences. A specific matK primer for Ephedra was newly designed in this study, which performed well on the sampled species. The primers proposed here for rbcL and matK can be easily and successfully amplified for most gymnosperms.

  6. Invasive algal mats degrade coral reef physical habitat quality

    Science.gov (United States)

    Martinez, Jonathan A.; Smith, Celia M.; Richmond, Robert H.

    2012-03-01

    Invasive species alter the ecology of marine ecosystems through a variety of mechanisms or combination of mechanisms. This study documented critical physical parameters altered by the invasive red macroalga Gracilaria salicornia in situ, including: reduced irradiance, increased sedimentation, and marked variation in diurnal dissolved oxygen and pH cycles in Kāne'ohe Bay, O'ahu, Hawai'i. Paired studies showed that algal mats reduced irradiance by 99% and doubled sediment accumulation. Several mats developed hypoxia and hyperoxia in the extreme minima and maxima, though there was no statistical difference detected in the mean or the variability of dissolved oxygen between different 30 min time points of 24 h cycles between algal mat-open reef pairs. The algal mat significantly acidified the water under the algal mat by decreasing pH by 0.10-0.13 pH units below open reef pH. A minimum of pH 7.47 occurred between 14 and 19 h after sunrise. Our combined results suggest that mats of G. salicornia can alter various physical parameters on a fine scale and time course not commonly detected. These changes in parameters give insight into the underlying basis for negative impact, and suggest new ways in which the presence of invasive species leads to decline of coral reef ecosystems.

  7. Compressibility of electrospun fiber mats

    OpenAIRE

    Choong, Looh Tchuin; Mannarino, Matthew M.; Basu, Sandip; Rutledge, Gregory C.

    2013-01-01

    Compressive properties of electrospun fiber mats are reported for the first time. Mats of bisphenol-A polysulfone (PSU) and of poly(trimethyl hexamethylene terephthalamide) [PA 6(3)T] were electrospun and annealed over a range of temperatures spanning the glass transition temperature of each polymer. The data for applied stress versus mat solidity were found to be well-described by a power law of the form σ[subscript zz] = kE(ϕ[superscript n] − ϕ[n over 0]), where σ[subscript zz] is the appli...

  8. Molecular ecology of microbial mats

    OpenAIRE

    Bolhuis, H; Cretoiu, M.S.; Stal, L.J.

    2014-01-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep and fluctuating physicochemical microgradients, that are the result of the ever changing environmental conditions and of the microorganisms' own activities, give rise to a plethora of potential ni...

  9. Methane Production by Microbial Mats Under Low Sulfate Concentrations

    Science.gov (United States)

    Bebout, Brad M.; Hoehler, Tori M.; Thamdrup, Bo; Albert, Dan; Carpenter, Steven P.; Hogan, Mary; Turk, Kendra; DesMarais, David J.

    2003-01-01

    Cyanobacterial mats collected in hypersaline salterns were incubated in a greenhouse under low sulfate concentrations ([SO4]) and examined for their primary productivity and emissions of methane and other major carbon species. Atmospheric greenhouse warming by gases such as carbon dioxide and methane must have been greater during the Archean than today in order to account for a record of moderate to warm paleoclemates, despite a less luminous early sun. It has been suggested that decreased levels of oxygen and sulfate in Archean oceans could have significantly stimulated microbial methanogenesis relative to present marine rates, with a resultant increase in the relative importance of methane in maintaining the early greenhouse. We maintained modern microbial mats, models of ancient coastal marine communities, in artificial brine mixtures containing both modern [SO4=] (ca. 70 mM) and "Archean" [SO4] (less than 0.2 mM). At low [SO4], primary production in the mats was essentially unaffected, while rates of sulfate reduction decreased by a factor of three, and methane fluxes increased by up to ten-fold. However, remineralization by methanogenesis still amounted to less than 0.4 % of the total carbon released by the mats. The relatively low efficiency of conversion of photosynthate to methane is suggested to reflect the particular geometry and chemical microenvironment of hypersaline cyanobacterial mats. Therefore, such mats w-ere probably relatively weak net sources of methane throughout their 3.5 Ga history, even during periods of low- environmental levels oxygen and sulfate.

  10. 基于叶绿体matK基因序列探讨10种石杉科石杉属植物的系统关系及分子鉴定%Phylogeny relationship and molecular identification of ten Huperzia species (Huperziaceae) based on matK gene sequences

    Institute of Scientific and Technical Information of China (English)

    姬生国; 潘胜利; 王峻; 霍克克

    2007-01-01

    目的:利用叶绿体matK基因序列探讨10种石杉属植物的系统发育及分子鉴定.方法:分别从9种石杉属植物中提取总DNA,经扩增纯化后,用PCR产物直接测序.结果:对石杉属Huperzia Bernh.9个种的叶绿体matK基因进行了测序,序列长度为1 589 bp,并对10个种(亮叶石杉H.lucidula的matK基因序列从GenBank中下载)的matK序列进行比对,其中有35个系统发育信息位点及35个变异位点,以垂穗石松Lycopodiella cernua为外类群,利用MEGA 3.1软件计算种与种之间的遗传距离在1.59%~0.25%,并构建系统树,获得最简约树和邻接树.结论:小杉兰组和蛇足石杉组植物分别聚成一枝,构成姊妹群,其靴带支持率分别为98%和99%.长柄石杉与蛇足石杉分别聚在2个不同进化枝,二者间有19个碱基差异,遗传距离为1.21%.建议应将长柄石杉单独列为一个种.

  11. The architecture of iron microbial mats reflects the adaptation of chemolithotrophic iron oxidation in freshwater and marine environments

    Directory of Open Access Journals (Sweden)

    Clara S Chan

    2016-06-01

    Full Text Available Microbes form mats with architectures that promote efficient metabolism within a particular physicochemical environment, thus studying mat structure helps us understand ecophysiology. Despite much research on chemolithotrophic Fe-oxidizing bacteria, Fe mat architecture has not been visualized because these delicate structures are easily disrupted. There are striking similarities between the biominerals that comprise freshwater and marine Fe mats, made by Beta- and Zetaproteobacteria, respectively. If these biominerals are assembled into mat structures with similar functional morphology, this would suggest that mat architecture is adapted to serve roles specific to Fe oxidation. To evaluate this, we combined light, confocal, and scanning electron microscopy of intact Fe microbial mats with experiments on sheath formation in culture, in order to understand mat developmental history and subsequently evaluate the connection between Fe oxidation and mat morphology. We sampled a freshwater sheath mat from Maine and marine stalk and sheath mats from Loihi Seamount hydrothermal vents, Hawaii. Mat morphology correlated to niche: stalks formed in steeper O2 gradients while sheaths were associated with low to undetectable O2 gradients. Fe-biomineralized filaments, twisted stalks or hollow sheaths, formed the highly porous framework of each mat. The mat-formers are keystone species, with nascent marine stalk-rich mats comprised of novel and uncommon Zetaproteobacteria. For all mats, filaments were locally highly parallel with similar morphologies, indicating that cells were synchronously tracking a chemical or physical cue. In the freshwater mat, cells inhabited sheath ends at the growing edge of the mat. Correspondingly, time lapse culture imaging showed that sheaths are made like stalks, with cells rapidly leaving behind an Fe oxide filament. The distinctive architecture common to all observed Fe mats appears to serve specific functions related to

  12. The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments

    Science.gov (United States)

    Chan, Clara S.; McAllister, Sean M.; Leavitt, Anna H.; Glazer, Brian T.; Krepski, Sean T.; Emerson, David

    2016-01-01

    Microbes form mats with architectures that promote efficient metabolism within a particular physicochemical environment, thus studying mat structure helps us understand ecophysiology. Despite much research on chemolithotrophic Fe-oxidizing bacteria, Fe mat architecture has not been visualized because these delicate structures are easily disrupted. There are striking similarities between the biominerals that comprise freshwater and marine Fe mats, made by Beta- and Zetaproteobacteria, respectively. If these biominerals are assembled into mat structures with similar functional morphology, this would suggest that mat architecture is adapted to serve roles specific to Fe oxidation. To evaluate this, we combined light, confocal, and scanning electron microscopy of intact Fe microbial mats with experiments on sheath formation in culture, in order to understand mat developmental history and subsequently evaluate the connection between Fe oxidation and mat morphology. We sampled a freshwater sheath mat from Maine and marine stalk and sheath mats from Loihi Seamount hydrothermal vents, Hawaii. Mat morphology correlated to niche: stalks formed in steeper O2 gradients while sheaths were associated with low to undetectable O2 gradients. Fe-biomineralized filaments, twisted stalks or hollow sheaths, formed the highly porous framework of each mat. The mat-formers are keystone species, with nascent marine stalk-rich mats comprised of novel and uncommon Zetaproteobacteria. For all mats, filaments were locally highly parallel with similar morphologies, indicating that cells were synchronously tracking a chemical or physical cue. In the freshwater mat, cells inhabited sheath ends at the growing edge of the mat. Correspondingly, time lapse culture imaging showed that sheaths are made like stalks, with cells rapidly leaving behind an Fe oxide filament. The distinctive architecture common to all observed Fe mats appears to serve specific functions related to chemolithotrophic Fe

  13. Sparse Coding for Alpha Matting

    OpenAIRE

    Johnson, Jubin; Varnousfaderani, Ehsan Shahrian; Cholakkal, Hisham; Rajan, Deepu

    2016-01-01

    Existing color sampling based alpha matting methods use the compositing equation to estimate alpha at a pixel from pairs of foreground (F) and background (B) samples. The quality of the matte depends on the selected (F,B) pairs. In this paper, the matting problem is reinterpreted as a sparse coding of pixel features, wherein the sum of the codes gives the estimate of the alpha matte from a set of unpaired F and B samples. A non-parametric probabilistic segmentation provides a certainty measur...

  14. The contribution of microbial mats to the arsenic geochemistry of an ancient gold mine

    International Nuclear Information System (INIS)

    The ancient Zloty Stok (SW Poland) gold mine is such an environment, where different microbial communities, able to utilize inorganic arsenic species As(III) and As(V), are found. The purpose of the present study was to (i) estimate prokaryotic diversity in the microbial mats in bottom sediments of this gold mine, (ii) identify microorganisms that can metabolize arsenic, and (iii) estimate their potential role in the arsenic geochemistry of the mine and in the environment. The oxidation/reduction experiments showed that the microbial mat community may significantly contribute to arsenic contamination in groundwater. The presence of both arsenite oxidizing and dissimilatory arsenate reducing bacteria in the mat was confirmed by the detection of arsenite oxidase and dissimilatory arsenate reductase genes, respectively. This work also demonstrated that microorganisms utilizing other compounds that naturally co-occur with arsenic are present within the microbial mat community and may contribute to the arsenic geochemistry in the environment. - Highlights: ► The microbial mats from this ancient gold mine are highly diverse community. ► As(III) oxidizing and As(V) reducing bacteria are present in the mats. ► As redox transformations are linked to the metabolism of microbial mats bacteria. ► Microbial mats play a crucial role in the As biogeochemical cycle within the mine. - The microbial mats from this ancient gold mine can mediate oxidation/reduction reaction of arsenic and in this way may significantly contribute to arsenic contamination in groundwater.

  15. Physicochemical evolution and positive selection of the gymnosperm matK proteins

    Indian Academy of Sciences (India)

    Da Cheng Hao; Jun Mu; Shi Lin Chen; Pei Gen Xiao

    2010-04-01

    It is not clear whether matK evolves under Darwinian selection. In this study, the gymnosperm Taxaceae, Cephalotaxaceae and Pinaceae were used to illustrate the physicochemical evolution, molecular adaptation and evolutionary dynamics of gene divergence in matKs. matK sequences were amplified from 27 Taxaceae and 12 Cephalotaxaceae species. matK sequences of 19 Pinaceae species were retrieved from GenBank. The phylogenetic tree was generated using conceptual-translated amino acid sequences. Selective influences were investigated using standard $d_{\\text{N}}/d_{\\text{S}}$ ratio methods and more sensitive techniques investigating the amino acid property changes resulting from nonsynonymous replacements in a phylogenetic context. Analyses revealed the presence of positive selection in matKs (N-terminal region, RT domain and domain X) of Taxaceae and Pinaceae, and found positive destabilizing selection in N-terminal region and RT domain of Cephalotaxaceae matK. Moreover, various amino acid properties were found to be influenced by destabilizing positive selection. Amino acid sites relating to these properties and to different secondary structures were found and have the potential to affect group II intron maturase function. Despite the evolutionary constraint on the rapidly evolving matK, this protein evolves under positive selection in gymnosperm. Several regions of matK have experienced molecular adaptation which fine-tunes maturase performance.

  16. Permeability of Electrospun Superhydrophobic Nanofiber Mats

    Directory of Open Access Journals (Sweden)

    Sarfaraz U. Patel

    2012-01-01

    Full Text Available This paper discusses the fabrication and characterization of electrospun nanofiber mats made up of poly(4-methyl-1-pentene polymer. The polymer was electrospun in different weight concentrations. The mats were characterized by their basis weight, fiber diameter distribution, contact angles, contact angle hysteresis, and air permeability. All of the electrospun nonwoven fiber mats had water contact angles greater than 150 degrees making them superhydrophobic. The permeabilities of the mats were empirically fitted to the mat basis weight by a linear relation. The experimentally measured air permeabilities were significantly larger than the permeabilities predicted by the Kuwabara model for fibrous media.

  17. The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated ecotypes in the Mushroom Spring microbial mat

    Directory of Open Access Journals (Sweden)

    Millie T. Olsen

    2015-06-01

    Full Text Available Genomes were obtained for three closely related strains of Synechococcus that are representative of putative ecotypes that predominate at different depths in the 1 mm-thick, upper-green layer in the 60°C mat of Mushroom Spring, Yellowstone National Park, and exhibit different light adaptation and acclimation responses. The genomes were compared to the published genome of a previously obtained, closely related strain from a neighboring spring, and differences in both gene content and orthologous gene alleles between high-light-adapted and low-light-adapted strains were identified. Evidence of genetic differences that relate to adaptation to light intensity and/or quality, CO2 uptake, nitrogen metabolism, organic carbon metabolism, and uptake of other nutrients were found between strains of the different putative ecotypes. In situ diel transcription patterns of genes, including genes unique to either low-light-adapted or high-light-adapted strains and different alleles of an orthologous photosystem gene, revealed that expression is fine-tuned to the different light environments experienced by ecotypes prevalent at various depths in the mat. This study suggests that strains of closely related putative ecotypes have different genomic adaptations that enable them to inhabit distinct ecological niches while living in close proximity within a microbial community.

  18. Archaean metabolic evolution of microbial mats

    OpenAIRE

    Nisbet, E. G.; Fowler, C. M. R.

    1999-01-01

    Microbial mats of coexisting bacteria and archaea date back to the early Archaean: many of the major steps in early evolution probably took place within them. The earliest mats may have formed as biofilms of cooperative chemolithotrophs in hyperthermophile settings, with microbial exploitation of diversifying niches. Anoxygenic photosynthesis using bacteriochlorophyll could have allowed mats, including green gliding bacteria, to colonize anaerobic shallow-water mesothermophile habitats. Explo...

  19. MatLab Script and Functional Programming

    Science.gov (United States)

    Shaykhian, Gholam Ali

    2007-01-01

    MatLab Script and Functional Programming: MatLab is one of the most widely used very high level programming languages for scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. The MatLab seminar covers the functional and script programming aspect of MatLab language. Specific expectations are: a) Recognize MatLab commands, script and function. b) Create, and run a MatLab function. c) Read, recognize, and describe MatLab syntax. d) Recognize decisions, loops and matrix operators. e) Evaluate scope among multiple files, and multiple functions within a file. f) Declare, define and use scalar variables, vectors and matrices.

  20. Bentonite mat demonstration. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Serrato, M.G.

    1994-12-30

    The Bentonite Mat Demonstration was developed to provide the Environmental Restoration Department with field performance characteristics and engineering data for an alternative closure cover system configuration. The demonstration was initiated in response to regulatory concerns regarding the use of an alternative cover system for future design configurations. These design considerations are in lieu of the US Environmental Protection Agency (EPA) Recommended Design for Closure Cover Systems and specifically a single compacted kaolin clay layer with a hydraulic conductivity of 1 {times} 10{sup {minus}7} cm/sec. This alternative configuration is a composite geosynthetic material hydraulic barrier consisting from bottom to top: 2 ft compacted sandy clay layer (typical local Savannah River Site soil type) that is covered by a bentonite mat--geosynthetic clay liner (GCL) and is overlaid by a 40 mil High Density Polyethylene (HDPE) geomembrane--flexible membrane liner. This effort was undertaken to obtain and document the necessary field performance/engineering data for future designs and meet regulatory technical requirements for an alternative cover system configuration. The composite geosynthetic materials hydraulic barrier is the recommended alternative cover system configuration for containment of hazardous and low level radiological waste layers that have a high potential of subsidence to be used at the Savannah River Site (SRS). This alternative configuration mitigates subsidence effects in providing a flexible, lightweight cover system to maintain the integrity of the closure. The composite geosynthetic materials hydraulic barrier is recommended for the Sanitary Landfill and Low Level Radiological Waste Disposal Facility (LLRWDF) Closures.

  1. Loss of matK RNA editing in seed plant chloroplasts

    Directory of Open Access Journals (Sweden)

    Maier Uwe G

    2009-08-01

    Full Text Available Abstract Background RNA editing in chloroplasts of angiosperms proceeds by C-to-U conversions at specific sites. Nuclear-encoded factors are required for the recognition of cis-elements located immediately upstream of editing sites. The ensemble of editing sites in a chloroplast genome differs widely between species, and editing sites are thought to evolve rapidly. However, large-scale analyses of the evolution of individual editing sites have not yet been undertaken. Results Here, we analyzed the evolution of two chloroplast editing sites, matK-2 and matK-3, for which DNA sequences from thousands of angiosperm species are available. Both sites are found in most major taxa, including deep-branching families such as the nymphaeaceae. However, 36 isolated taxa scattered across the entire tree lack a C at one of the two matK editing sites. Tests of several exemplary species from this in silico analysis of matK processing unexpectedly revealed that one of the two sites remain unedited in almost half of all species examined. A comparison of sequences between editors and non-editors showed that specific nucleotides co-evolve with the C at the matK editing sites, suggesting that these nucleotides are critical for editing-site recognition. Conclusion (i Both matK editing sites were present in the common ancestor of all angiosperms and have been independently lost multiple times during angiosperm evolution. (ii The editing activities corresponding to matK-2 and matK-3 are unstable. (iii A small number of third-codon positions in the vicinity of editing sites are selectively constrained independent of the presence of the editing site, most likely because of interacting RNA-binding proteins.

  2. Aspects of the ecology of mat-forming lichens

    Directory of Open Access Journals (Sweden)

    P. D. Crittenden

    2000-03-01

    Full Text Available Lichen species in the genera Cladonia (subgenus Cladina, Cetraria, Stereocaulon and Alectoria are important vegetation components on well-drained terrain and on elevated micro-sites in peatlands in boreal-Arctic regions. These lichens often form closed mats, the component thalli in which grow vertically upwards at the apices and die off in the older basal regions; they are therefore only loosely attached to the underlying soil. This growth habit is relatively unusual in lichens being found in <0.5% of known species. It might facilitate internal nutrienr recycling and higher growth rates and, together with the production of allelochemicals, it might underlie the considerable ecological success of mat-forming lichens; experiments to critically assess the importance of these processes are required. Mat-forming lichens can constitute in excess of 60% of the winter food intake of caribou and reindeer. Accordingly there is a pressing need for data on lichen growth rates, measured as mass increment, in order to help determine the carrying capacity of winter ranges for rhese herbivores and to better predict recovery rates following grazing. Trampling during the snow-free season fragments lichen thalli; mat-forming lichens regenerate very successfully from thallus fragments provided trampling does nor re-occur. Frequent recurrence of trampling creates disturbed habitats from which lichens will rapidly become eliminated consistent with J.P. Grime's CSR strategy theory. Such damage to lichen ground cover has occurred where reindeer or caribou are unable to migrate away from their winter range such as on small islands or where political boundaries have been fenced; it can also occur on summer range that contains a significant lichen component and on winter range where numbers of migrarory animals become excessive. Species of Stereocaulon, and other genera that contain cyanobacteria (most notably Peltigera and Nephroma, are among the principal agents of

  3. Effects of mat characteristics on plantar pressure patterns and perceived mat properties during landing in gymnastics.

    Science.gov (United States)

    Pérez-Soriano, Pedro; Llana-Belloch, Salvador; Morey-Klapsing, Gaspar; Perez-Turpin, Jose Antonio; Cortell-Tormo, Juan Manuel; van den Tillaar, Roland

    2010-11-01

    Shock absorption and stability during landings is provided by both, gymnast ability and mat properties. The aims of this study were to determine the influence of different mat constructions on their energy absorption and stability capabilities, and to analyse how these properties affect gymnast's plantar pressures as well as subjective mat perception during landing. Six mats were tested using a standard mechanical drop test. In addition, plantar pressures and subjective perception during landing were obtained from 15 expert gymnasts. The different mats influenced plantar pressures and gymnasts' subjective perception during landing of gymnasts. Significant correlations between plantar pressures at the medial metatarsal and lateral metatarsal zones of the gymnasts' feet with the different shock absorption characteristics of the mats were found. However, subjective perception tests were not able to discriminate mat functionality between the six mats as no significant correlations between the mechanical mat properties with the subjective perception of these properties were found. This study demonstrated that plantar pressures are a useful tool for discriminating different landing mats. Using similar approaches, ideally including kinematics as well, could help us in our understanding about the influences of different mats upon gymnast-mat interaction. PMID:21309299

  4. Nonwoven glass fiber mat reinforces polyurethane adhesive

    Science.gov (United States)

    Roseland, L. M.

    1967-01-01

    Nonwoven glass fiber mat reinforces the adhesive properties of a polyurethane adhesive that fastens hardware to exterior surfaces of aluminum tanks. The mat is embedded in the uncured adhesive. It ensures good control of the bond line and increases the peel strength.

  5. Investigation of VEGGIE Root Mat

    Science.gov (United States)

    Subbiah, Arun M.

    2013-01-01

    VEGGIE is a plant growth facility that utilizes the phenomenon of capillary action as its primary watering system. A cloth made of Meta Aramid fiber, known as Nomex is used to wick water up from a reservoir to the bottom of the plants roots. This root mat system is intended to be low maintenance with no moving parts and requires minimal crew interface time. Unfortunately, the water wicking rates are inconsistent throughout the plant life cycle, thus causing plants to die. Over-wicking of water occurs toward the beginning of the cycle, while under-wicking occurs toward the middle. This inconsistency of wicking has become a major issue, drastically inhibiting plant growth. The primary objective is to determine the root cause of the inconsistent wicking through experimental testing. Suspect causes for the capillary water column to break include: a vacuum effect due to a negative pressure gradient in the water reservoir, contamination of material due to minerals in water and back wash from plant fertilizer, induced air bubbles while using syringe refill method, and material limitations of Nomex's ability to absorb and retain water. Experimental testing will be conducted to systematically determine the cause of under and over-wicking. Pressure gages will be used to determine pressure drop during the course of the plant life cycle and during the water refill process. A debubbler device will be connected to a root mat in order to equalize pressure inside the reservoir. Moisture and evaporation tests will simultaneously be implemented to observe moisture content and wicking rates over the course of a plant cycle. Water retention tests will be performed using strips of Nomex to determine materials wicking rates, porosity, and absorptivity. Through these experimental tests, we will have a better understanding of material properties of Nomex, as well as determine the root cause of water column breakage. With consistent test results, a forward plan can be achieved to resolve

  6. Expression, purification and preliminary structural analysis of Escherichia coli MatP in complex with the matS DNA site

    International Nuclear Information System (INIS)

    MatP is a small DNA-binding protein of about 18 kDa. In order to understand the DNA-compaction mechanism of MatP at an atomic level, the structures of apo MatP and of the nucleoprotein complex MatP–matS have been studied. The Escherichia coli chromosome is organized into four macrodomains which are found in the replication-origin region (Ori), at the terminus (Ter) and on both its sides (Right and Left). The localization of the macrodomains is subject to programmed changes during the cell cycle. The compaction of the 800 kb Ter macrodomain relies on the binding of the MatP protein to a 13 bp matS motif repeated 23 times. MatP is a small DNA-binding protein of about 18 kDa that shares homology in its C-terminal region with the ribbon–helix–helix (RHH) motifs present in regulatory DNA-binding proteins such as CopG. In order to understand the DNA-compaction mechanism of MatP at an atomic level, it was decided to study the structure of apo MatP and of the nucleoprotein complex MatP–matS by both X-ray diffraction and SAXS analysis. It was demonstrated that MatP forms dimers that bind a single matS motif. Complete native X-ray data sets were collected and phasing of the diffraction data is under way

  7. The contribution of microbial mats to the arsenic geochemistry of an ancient gold mine.

    Science.gov (United States)

    Drewniak, Lukasz; Maryan, Natalia; Lewandowski, Wiktor; Kaczanowski, Szymon; Sklodowska, Aleksandra

    2012-03-01

    The ancient Zloty Stok (SW Poland) gold mine is such an environment, where different microbial communities, able to utilize inorganic arsenic species As(III) and As(V), are found. The purpose of the present study was to (i) estimate prokaryotic diversity in the microbial mats in bottom sediments of this gold mine, (ii) identify microorganisms that can metabolize arsenic, and (iii) estimate their potential role in the arsenic geochemistry of the mine and in the environment. The oxidation/reduction experiments showed that the microbial mat community may significantly contribute to arsenic contamination in groundwater. The presence of both arsenite oxidizing and dissimilatory arsenate reducing bacteria in the mat was confirmed by the detection of arsenite oxidase and dissimilatory arsenate reductase genes, respectively. This work also demonstrated that microorganisms utilizing other compounds that naturally co-occur with arsenic are present within the microbial mat community and may contribute to the arsenic geochemistry in the environment. PMID:22243864

  8. Microstructuring of electrospun mats employing femtosecond laser

    Directory of Open Access Journals (Sweden)

    Erika Adomavičiūtė

    2015-03-01

    Full Text Available Electrospun mats from nano/micro-fibers with control porosity and pore shape may be ideal candidate for tissue engineering scaffolds. In this study three type of poly(vinyl alcohol (PVA mats of 48-65 µm thickness with different nano/micro-fibers diameters mostly of 100-200 nm were deposited by electrospinning process. Controlled density porosity in the electrospun mats was introduced by Yb:KGW femtosecond laser micromachining system. The influence of electrospun mat micro structure, the distance between the adjacent laser ablation points, the number of femtosecond laser pulses on quality and structure of laser irradiated holes were investigated. It was demonstrated that the quality of irradiated holes depend on structure of electrospun mats (diameter of nano/micro-fibers, thickness of mats and femtosecond laser processing parameters. Varying the distance between points and number of applied femtosecond laser pulses it is possible to fabricate electrospun mats with pores of 22-36 μm diameter.DOI: http://dx.doi.org/10.5755/j01.ms.21.1.10249

  9. Large red cyanobacterial mats (Spirulina subsalsa Oersted ex Gomont in the shallow sublittoral of the southern Baltic

    Directory of Open Access Journals (Sweden)

    Piotr Balazy

    2014-06-01

    Full Text Available We report the first observation of large red cyanobacterial mats in the southern Baltic Sea. The mats (up to 2.5 m in diameter were observed by SCUBA divers at 7.7 m depth on loamy sediments in the Gulf of Gdańsk in mid-November 2013. The main structure of the mat was formed by cyanobacteria Spirulina subsalsa Oersted ex Gomont; a number of other cyanobacteria, diatoms and nematode species were also present. After a few days in the laboratory, the red trichomes of S. subsalsa started to turn blue-green in colour, suggesting the strong chromatic acclimation abilities of this species.

  10. Design of reactor building foundation mat system

    International Nuclear Information System (INIS)

    The design of the reactor building foundation mat system represents a great challenge to industry, since the design codes are not written specifically for such large and complicated interfacing configurations. The experimental data are also not available for such mats. It relies heavily upon the designer to decide the appropriate analysis techniques and code applications. The large number of loading combinations in design and the complexity of detailing and construction demonstrate the difficulty of the task. A case study of a BWR 6, Mark III containment vessel reactor building foundation mat system is presented here to describe a complete design. Code jurisdictional boundaries for each component are attempted. The design of the mat has to comply with all the loading combinations required by the regulatory agencies. However, this results in a very large number of combinations to be considered. By inspection, the large number of loading combinations is reduced to a smaller number of controlling combinations, which is analyzed using computer programs. A finite elements model is used for analysis. The soil is represented as elastic springs at the nodes. Using a process of trial and error, the springs that produce tensile stresses are eliminated from subsequent analysis, and only compression springs are retained. This process should give a true picture of the stress conditionn under the mat, and also the stresses within the mat. An acceptance is discussed for the residual local tension forces. (orig./HP)

  11. Regulation of mat responses by a differentiation MAPK pathway in Saccharomyces cerevisiae.

    Directory of Open Access Journals (Sweden)

    Sheelarani Karunanithi

    Full Text Available Fungal species exhibit diverse behaviors when presented with extracellular challenges. Pathogenic fungi can undergo cell differentiation and biofilm formation in response to fluctuating nutrient levels, and these responses are required for virulence. In the model fungal eukaryote Saccharomyces cerevisiae, nutrient limitation induces filamentous growth and biofilm/mat formation. Both responses require the same signal transduction (MAPK pathway and the same cell adhesion molecule (Flo11 but have been studied under different conditions. We found that filamentous growth and mat formation are aspects of a related response that is regulated by the MAPK pathway. Cells in yeast-form mats differentiated into pseudohyphae in response to nutrient limitation. The MAPK pathway regulated mat expansion (in the plane of the XY-axis and substrate invasion (downward in the plane of the Z-axis, which optimized the mat's response to extracellular nutrient levels. The MAPK pathway also regulated an upward growth pattern (in the plane of the Z-axis in response to nutrient limitation and changes in surface rigidity. Upward growth allowed for another level of mat responsiveness and resembled a type of colonial chemorepulsion. Together our results show that signaling pathways play critical roles in regulating social behaviors in which fungal cells participate. Signaling pathways may regulate similar processes in pathogens, whose highly nuanced responses are required for virulence.

  12. A strategy for biomimetic hybridization of electrospun fiber mat cross-sections

    Energy Technology Data Exchange (ETDEWEB)

    Mavis, Bora, E-mail: bmavis@hacettepe.edu.tr

    2011-10-10

    Concentrated synthetic body fluid (c-SBF) recipes have been used in biomimetic deposition of calcium phosphate (CaP) phases on electrospun polycaprolactone (PCL) fiber mats. However, cross-sections of mats could not be coated entirely when simple soaking methods had been used. In this study, calcium and phosphate sources that are used in typical c-SBF recipes were placed in two compartments which were separated by PCL fiber mats. By varying the concentrations of calcium and phosphate sources in either compartment according to a thermodynamic model, the difference between pH levels of compartments was adjusted. A gradual and homogeneous increase in supersaturation levels was achieved on both sides of the membrane with the onset of diffusion of species through the membrane. The strategy of separation of c-SBF constituents permitted coatings that extended through the cross-section of mats. In addition, types of CaP phases that can be precipitated on opposite sides of the membrane under different conditions were predicted by the same thermodynamic model. It was possible to coat the cross-sections of mats with the targeted phase mixtures by using the developed modeling approach. Highlights: {yields} A strategy for coating cross-sections of electrospun fiber mats is developed. {yields} Constituents of concentrated CPS were separated with mats to be coated. {yields} Both, sides and the cross-sections of fiber mats were coated simultaneously. {yields} Alternative that resulted in a biphasic and a single phase coating on opposite sides was predicted by thermodynamic model used. {yields} Coatings were changed from single phase to biphasic by decreasing the difference in pH values of the compartments.

  13. A strategy for biomimetic hybridization of electrospun fiber mat cross-sections

    International Nuclear Information System (INIS)

    Concentrated synthetic body fluid (c-SBF) recipes have been used in biomimetic deposition of calcium phosphate (CaP) phases on electrospun polycaprolactone (PCL) fiber mats. However, cross-sections of mats could not be coated entirely when simple soaking methods had been used. In this study, calcium and phosphate sources that are used in typical c-SBF recipes were placed in two compartments which were separated by PCL fiber mats. By varying the concentrations of calcium and phosphate sources in either compartment according to a thermodynamic model, the difference between pH levels of compartments was adjusted. A gradual and homogeneous increase in supersaturation levels was achieved on both sides of the membrane with the onset of diffusion of species through the membrane. The strategy of separation of c-SBF constituents permitted coatings that extended through the cross-section of mats. In addition, types of CaP phases that can be precipitated on opposite sides of the membrane under different conditions were predicted by the same thermodynamic model. It was possible to coat the cross-sections of mats with the targeted phase mixtures by using the developed modeling approach. Highlights: → A strategy for coating cross-sections of electrospun fiber mats is developed. → Constituents of concentrated CPS were separated with mats to be coated. → Both, sides and the cross-sections of fiber mats were coated simultaneously. → Alternative that resulted in a biphasic and a single phase coating on opposite sides was predicted by thermodynamic model used. → Coatings were changed from single phase to biphasic by decreasing the difference in pH values of the compartments.

  14. Contributions of ectomycorrhizal fungal mats to forest soil respiration

    OpenAIRE

    Phillips, C. L.; L. A. Kluber; Martin, J. P.; B. A. Caldwell; B. J. Bond

    2012-01-01

    Distinct aggregations of fungal hyphae and rhizomorphs, or "mats", formed by some genera of ectomycorrhizal (EcM) fungi are common features of soils in coniferous forests of the Pacific Northwest. We measured in situ respiration rates of Piloderma mats and neighboring non-mat soils in an old-growth Douglas-fir forest in western Oregon to investigate whether there was higher respiration from mats, and to estimate mat contributions to total soil respiration. We found that are...

  15. Dynamics of bacterial populations during bench-scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats.

    Science.gov (United States)

    Ali, Nidaa; Dashti, Narjes; Salamah, Samar; Sorkhoh, Naser; Al-Awadhi, Husain; Radwan, Samir

    2016-03-01

    This study describes a bench-scale attempt to bioremediate Kuwaiti, oily water and soil samples through bioaugmentation with coastal microbial mats rich in hydrocarbonoclastic bacterioflora. Seawater and desert soil samples were artificially polluted with 1% weathered oil, and bioaugmented with microbial mat suspensions. Oil removal and microbial community dynamics were monitored. In batch cultures, oil removal was more effective in soil than in seawater. Hydrocarbonoclastic bacteria associated with mat samples colonized soil more readily than seawater. The predominant oil degrading bacterium in seawater batches was the autochthonous seawater species Marinobacter hydrocarbonoclasticus. The main oil degraders in the inoculated soil samples, on the other hand, were a mixture of the autochthonous mat and desert soil bacteria; Xanthobacter tagetidis, Pseudomonas geniculata, Olivibacter ginsengisoli and others. More bacterial diversity prevailed in seawater during continuous than batch bioremediation. Out of seven hydrocarbonoclastic bacterial species isolated from those cultures, only one, Mycobacterium chlorophenolicum, was of mat origin. This result too confirms that most of the autochthonous mat bacteria failed to colonize seawater. Also culture-independent analysis of seawater from continuous cultures revealed high-bacterial diversity. Many of the bacteria belonged to the Alphaproteobacteria, Flavobacteria and Gammaproteobacteria, and were hydrocarbonoclastic. Optimal biostimulation practices for continuous culture bioremediation of seawater via mat bioaugmentation were adding the highest possible oil concentration as one lot in the beginning of bioremediation, addition of vitamins, and slowing down the seawater flow rate. PMID:26751253

  16. Cloning of mating-type gene MAT1-1 from the caterpillar medicinal mushroom, Cordyceps militaris (Ascomycetes) using TAIL-PCR technology.

    Science.gov (United States)

    Cong, Wei-Ran; Gong, Zhen-Hua; Shi, Dan-Dan; Guo, Hui; Zhou, Xuanwei

    2014-01-01

    Cordyceps militaris and Ophiocordyceps sinensis (syn. Cordyceps sinensis), 2 well-known traditional Chinese medicines, contain the same bioactive components and share a similar developmental process. In this study, one C. militaris strain preserved in our laboratory was proven to be a MAT1 mating-type strain using a polymerase chain reaction-based mating-type assay. A 5000-bp nucleotide sequence of the mating-type MAT1-1 from C. militaris was amplified by thermal asymmetric interlaced polymerase chain reaction, but genes within the mating-type MAT1-2 remain undetectable. Sequence analysis shows that the mating-type gene MAT1-1 idiomorph contains 2 genes, MAT1-1-1 and MAT1-1-2. The MAT1-1-1 gene consists of 1480-bp nucleotides that encode 456 amino acids and contain the conserved a-box domain interrupted by 2 introns; the MAT1-1-2 gene consists of 1066 nucleotides that encode 377 amino acids interrupted by one intron. The intervening distance between MAT1-1-1 and MAT1-1-2 is 778 bp. The C. militaris MAT1-1 idiomorph organization is the same as that of Cordyceps takaomontana. The MAT1-1 mating-type idiomorph of both Cordyceps species lacks the MAT1-1-3 gene, which is typically present in Pyrenomycetes. These studies provide some insights for further study of the morphological development of C. militaris and will eventually benefit the domestication of O. sinensis. PMID:25271980

  17. Carbon and Oxygen Budgets of Subtidal and Intertidal Cyanobacterial Mats

    Science.gov (United States)

    DesMarais, David J.; Discipulo, Mykell; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Intertidal cyanobacterial mats (Lyngbya-dominated) are contrasted with mats (Microcoleus-dominated) that grow in subtidal (0.7m water depth) hypersaline (90-110 permil) environments. In benthic chamber experiments conducted in Oct., 1999, mats exhibited greater net uptake of dissolved inorganic carbon (DIC) from overlying water during the daylight period than Microcoleus mats (e.g., 200 vs 120 mmol C/m. at 26 deg C, respectively). Net DIC release at night was similar for both mats (approx. 80 mmol C/m). Daytime net O2 release by Lyngby mats exceeded that by Microcoleus mats (150 vs 100 mmol O2/m), and O2 uptake at night was comparable for both mats (60-80 mmol O2/m). Nonphotosynthetic populations are more prominent within the subtidal versus intertidal mats, and accordingly exhibited greater internal 02 uptake and DIC production during the day. Over 24 hours, Lyngby-dominated mats exhibited greater net uptake of DIC than subtidal Microcoleus mats, consistent with these intertidal mats being "pioneer" communities that constantly recover from periodic physical disruption in energetic environments. The Microcoleus-dominated mats achieve steady-state mat thicknesses by balancing primary production against diagenetic decomposition of cellular and extracellular organic constituents.

  18. Matérn thinned Cox processes

    DEFF Research Database (Denmark)

    Andersen, Ina Trolle; Hahn, Ute

    2016-01-01

    A class of spatial point process models that combine short range repulsion with medium range clustering is introduced. The model is motivated by patterns of centres of non-overlapping spherical cells in biological tissue which tend to have a clustering behaviour. Such a combination of clustering...... and hard core behaviour can be achieved by applying a dependent Matérn thinning to a Cox process. An exact formula for the intensity of a Matérn thinned shot noise Cox process is derived from the Palm distribution. For the more general class of Matérn thinned Cox processes, formulae for the intensity...... and second-order characteristics are established using the conditional Poisson assumption. These formulae include more complicated integrals for which approximations are suggested to simplify calculations. An example from pathology illustrates the applicability of the models....

  19. Matérn thinned Cox processes

    DEFF Research Database (Denmark)

    Andersen, Ina Trolle; Hahn, Ute

    A new class of spatial point process models that combines short range repulsion with medium range clustering is introduced. The model is motivated by patterns of centres of non-overlapping spherical cells in biological tissue which tend to have a clustering behaviour. Such a combination...... of clustering and hard core behaviour can be achieved by applying a dependent Matérn thinning to a Cox process. An exact formula for the intensity of a Matérn thinned shot noise Cox process is derived from the Palm distribution. For the more general class of Matérn thinned Cox processes, formulae...... for the intensity and second-order characteristics are established using the conditional Poisson assumption. These formulae include more complicated integrals for which approximations are suggested to simplify calculations. An example from pathology illustrates the applicability of the models....

  20. Effects of root mat buoyancy and heterogeneity on floating fen hydrology

    NARCIS (Netherlands)

    Stofberg, S.F.; Engelen, van Joeri; Witte, J.Ph.M.; Zee, van der S.E.A.T.M.

    2016-01-01

    Floating fen ecosystems are home to several protected habitats and species. Their development and conservation require special
    attention regarding water management. Although they are known to be heterogeneous and partially buoyant, their root mats are
    simulated in hydrological models as homo

  1. Experimental weed control of Najas marina ssp. intermedia and Elodea nuttallii in lakes using biodegradable jute matting

    Directory of Open Access Journals (Sweden)

    Markus A. Hoffmann

    2013-10-01

    Full Text Available The use of jute matting in managing the invasive aquatic macrophyte species Elodea nuttallii (Planch. H. St. John and Najas marina ssp. intermedia (Wolfg. ex Gorski Casper (Najas intermedia was studied in laboratory experiments and field trials. Four German lakes with predominant population of Najas intermedia or Elodea nuttalli were chosen for the experiment and areas between 150 and 300 m² were covered with jute textile. The effect of the matting on the growth of invasive and non-invasive macrophytes was determined through comparison with control transects. Biodegradable jute matting successfully suppressed the invasive macrophyte Najas intermedia and significantly reduced the growth of Elodea nuttalli in lakes. The results indicate that the capability of the matting to inhibit the growth of Elodea nuttallii and Najas intermedia depends on the mesh size of the jute weaving and that environmental conditions can affect its efficiency. Various indigenous species like Charales or Potamogeton pusillus L. were able to grow through the jute fabric and populate the treated areas. Until the end of the vegetation period, none of the invasive species were able to penetrate the covering and establish a stable population; in fact, in the subsequent year the jute matting affected only the spread of Najas intermedia. Jute matting proved to be an easy-to-use and cheap method to control the growth of Elodea nuttallii and Najas intermedia.

  2. HiRadMat: materials under scrutiny

    CERN Multimedia

    Anaïs Schaeffer

    2011-01-01

    CERN's new facility, HiRadMat (High Radiation to Materials), which is designed to test materials for the world's future particle accelerators, should be operational and welcoming its first experiments by the end of the year.   The HiRadMat facility, located in the TNC tunnel. The materials used in the LHC and its experiments are exposed to very high-energy particles. The LHC machine experts obviously didn't wait for the first collisions in the world's most powerful accelerator to put the materials through their paces - the equipment was validated following a series of stringent tests. And these tests will get even tougher now, with the arrival of HiRadMat. The tunnel that formerly housed the West Area Neutrino Facility (WANF) has been completely revamped to make way for CERN's latest facility, HiRadMat. Supported by the Radioprotection service, a team from the Engineering (EN) Department handled the dismantling operations from October 2009 to December 2010. "We could only work on disman...

  3. Thermodynamics and phase transformations the selected works of Mats Hillert

    CERN Document Server

    Lilensten, Jean

    2006-01-01

    This book is a compendium of Mat Hillert's publications. Mat Hillert is a world specialist in metal alloy at the origin of a universal computing code used to calculate the diagrams of phase. This work is in English.

  4. Interactions between macro-algal mats and invertebrates in the Ythan estuary, Aberdeenshire, Scotland

    Science.gov (United States)

    Raffaelli, D.

    2000-07-01

    Blooms of opportunistic green macro-algae are a common feature of coastal areas and their effects on mudflat invertebrates can be dramatic. On the Ythan estuary, Aberdeenshire, Scotland, we have carried out a number of manipulative field experiments designed to evaluate the effects on invertebrates of different species of macro-algae with contrasting ecologies, and the effects of invertebrates on the development of the blooms. Macro-algal mats were found to have dramatic nega- tive effects on the density of the amphipod Corophium volutator, with higher algal biomasses having greater impact. The mechanism for this interaction seems to be interference by the algal filaments with the feeding behaviour of the amphipod. In contrast, the polychaete Capitella spp. increases in abundance under macro-algal mats due to enrichment of the sediment with organic material. These two interactions are seen at all scales, in areas of less than 1 m2 to the scale of the entire estuary, irrespective of the species composition of the macro- algal mats. Bioturbation by Corophium and grazing by the snail Hydrobia ulvae had little effect on macro-algal biomass, but there were less algae when the polychaete Nereis diversicolor was present. The most significant interaction in this system is the pronounced negative impact of algal mats on the abundance of Corophium, probably the most important invertebrate species in the diets of the estuary's shorebirds, fish and epibenthic crustaceans.

  5. Method for production of carbon nanofiber mat or carbon paper

    Science.gov (United States)

    Naskar, Amit K.

    2015-08-04

    Method for the preparation of a non-woven mat or paper made of carbon fibers, the method comprising carbonizing a non-woven mat or paper preform (precursor) comprised of a plurality of bonded sulfonated polyolefin fibers to produce said non-woven mat or paper made of carbon fibers. The preforms and resulting non-woven mat or paper made of carbon fiber, as well as articles and devices containing them, and methods for their use, are also described.

  6. Subsurface Microbial Methanotrophic Mats in the Black Sea†

    OpenAIRE

    Treude, Tina; Knittel, Katrin; Blumenberg, Martin; Seifert, Richard; Boetius, Antje

    2005-01-01

    A nodule-shaped microbial mat was found subsurface in sediments of a gas seep in the anoxic Black Sea. This mat was dominated by ANME-1 archaea and consumed methane and sulfate simultaneously. We propose that such subsurface mats represent the initial stage of previously investigated microbial reefs.

  7. Contributions of ectomycorrhizal fungal mats to forest soil respiration

    Directory of Open Access Journals (Sweden)

    C. L. Phillips

    2012-06-01

    Full Text Available Distinct aggregations of fungal hyphae and rhizomorphs, or "mats", formed by some genera of ectomycorrhizal (EcM fungi are common features of soils in coniferous forests of the Pacific Northwest. We measured in situ respiration rates of Piloderma mats and neighboring non-mat soils in an old-growth Douglas-fir forest in western Oregon to investigate whether there was higher respiration from mats, and to estimate mat contributions to total soil respiration. We found that areas where Piloderma mats colonized the organic horizon often had higher soil surface flux than non-mats, with the relative increase in respiration averaging 16% across two growing seasons. Both soil physical factors and biochemistry were related to the higher surface flux of mat soils. When soil moisture was high, soil CO2 production was concentrated into near-surface soil horizons where mats tend to colonize, resulting in greater apparent differences in respiration between mat and non-mat soils. Respiration rates were also correlated with the activity of chitin-degrading soil enzymes. This finding supports the notion that the abundance of fungal biomass in EcM mats is an important driver of C and N cycling. We found Piloderma mats present across 57% of the exposed soil, and use this value to estimate a respiratory contribution from mats at the stand-scale of about 9% of total soil respiration. The activity of EcM mats, which includes both EcM fungi and microbial associates, appeared to constitute a substantial portion of total soil respiration in this old-growth Douglas-fir forest.

  8. Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

    Science.gov (United States)

    Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

    2001-01-01

    Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended

  9. Contributions of ectomycorrhizal fungal mats to forest soil respiration

    Directory of Open Access Journals (Sweden)

    C. L. Phillips

    2012-02-01

    Full Text Available Distinct aggregations of fungal hyphae and rhizomorphs, or "mats" formed by some genera of ectomycorrhizal (EcM fungi are common features of soils in coniferous forests of the Pacific Northwest. We measured in situ respiration rates of Piloderma mats and neighboring non-mat soils in an old-growth Douglas-fir forest in Western Oregon to investigate whether there was an incremental increase in respiration from mat soils, and to estimate mat contributions to total soil respiration. We found that areas where Piloderma mats colonized the organic horizon often had higher soil surface flux than non-mats, with the incremental increase in respiration averaging 16 % across two growing seasons. Both soil physical factors and biochemistry were related to the higher surface flux of mat soils. When air-filled pore space was low (high soil moisture, soil CO2 production was concentrated into near-surface soil horizons where mats tend to colonize, resulting in greater apparent differences in respiration between mat and non-mat soils. Respiration rates were also correlated with the activity of chitin-degrading soil enzymes. This suggests that the elevated activity of fungal mats may be related to consumption or turnover of chitinous fungal cell-wall materials. We found Piloderma mats present across 57 % of the soil surface in the study area, and use this value to estimate a respiratory contribution from mats at the stand-scale of about 9 % of total soil respiration. The activity of EcM mats, which includes both EcM fungi and microbial associates, was estimated to constitute a substantial portion of total soil respiration in this old-growth Douglas-fir forest.

  10. Permeability of Electro spun Super hydrophobic Nano fiber Mats

    International Nuclear Information System (INIS)

    This paper discusses the fabrication and characterization of electro spun nano fiber mats made up of poly(4-methyl-1-pentene) polymer. The polymer was electro spun in different weight concentrations. The mats were characterized by their basis weight, fiber diameter distribution, contact angles, contact angle hysteresis, and air permeability. All of the electro spun nonwoven fiber mats had water contact angles greater than 150 degrees making them super hydrophobic. The permeabilities of the mats were empirically fitted to the mat basis weight by a linear relation. The experimentally measured air permeabilities were significantly larger than the permeabilities predicted by the Kuwabara model for fibrous media.

  11. High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales.

    Science.gov (United States)

    Healy, R A; Smith, M E; Bonito, G M; Pfister, D H; Ge, Z-W; Guevara, G G; Williams, G; Stafford, K; Kumar, L; Lee, T; Hobart, C; Trappe, J; Vilgalys, R; McLaughlin, D J

    2013-03-01

    Fungal mitospores may function as dispersal units and/ or spermatia and thus play a role in distribution and/or mating of species that produce them. Mitospore production in ectomycorrhizal (EcM) Pezizales is rarely reported, but here we document mitospore production by a high diversity of EcM Pezizales on three continents, in both hemispheres. We sequenced the internal transcribed spacer (ITS) and partial large subunit (LSU) nuclear rDNA from 292 spore mats (visible mitospore clumps) collected in Argentina, Chile, China, Mexico and the USA between 2009 and 2012. We collated spore mat ITS sequences with 105 fruit body and 47 EcM root sequences to generate operational taxonomic units (OTUs). Phylogenetic inferences were made through analyses of both molecular data sets. A total of 48 OTUs from spore mats represented six independent EcM Pezizales lineages and included truffles and cup fungi. Three clades of seven OTUs have no known meiospore stage. Mitospores failed to germinate on sterile media, or form ectomycorrhizas on Quercus, Pinus and Populus seedlings, consistent with a hypothesized role of spermatia. The broad geographic range, high frequency and phylogenetic diversity of spore mats produced by EcM Pezizales suggests that a mitospore stage is important for many species in this group in terms of mating, reproduction and/or dispersal. PMID:23205556

  12. Impregnation of thermoplastic resin in jute fiber mat

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Impregnation rate of thermoplastic resin (polypropylene) in jute fiber mat and influence of relative factors on impregnation were studied,aiming to develop the continuous melt impregnation technique and to investigate the effect of impregnation rate and temperature on processing conditions and mechanical properties of natural fiber mat-reinforced thermoplastics.Influence of pressure on porosity of fiber mat and effect of melt viscosity on impregnation rate were also investigated.The modified capillary rheometer was used as apparatus and experimental data were analyzed based on the one-dimension Darcy's law.Results showed that at a given pressure,the impregnation rate is inversely proportional to melt viscosity and jute fiber mat has higher porosity than glass fiber mat.The architecture,compressibility,permeability and fiber diameter of jute fiber mat were compared with those of glass fiber mat and their effects on impregnation were discussed further.It could be seen that the average diameter of jute fiber is much bigger;the porosity of jute fiber mat is significantly higher and inner bundle impregnation does not exist in jute fiber mat.Therefore,it is not difficult to understand why the impregnation rate in jute fiber mat is 3.5 times higher and permeability is 14 times greater.Kozeny constants of jute and glass fiber mats calculated based on the capillary model are 2950 and 442,respectively.

  13. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities

    Science.gov (United States)

    Ward, D. M.; Ferris, M. J.; Nold, S. C.; Bateson, M. M.

    1998-01-01

    This review summarizes a decade of research in which we have used molecular methods, in conjunction with more traditional approaches, to study hot spring cyanobacterial mats as models for understanding principles of microbial community ecology. Molecular methods reveal that the composition of these communities is grossly oversimplified by microscopic and cultivation methods. For example, none of 31 unique 16S rRNA sequences detected in the Octopus Spring mat, Yellowstone National Park, matches that of any prokaryote previously cultivated from geothermal systems; 11 are contributed by genetically diverse cyanobacteria, even though a single cyanobacterial species was suspected based on morphologic and culture analysis. By studying the basis for the incongruity between culture and molecular samplings of community composition, we are beginning to cultivate isolates whose 16S rRNA sequences are readily detected. By placing the genetic diversity detected in context with the well-defined natural environmental gradients typical of hot spring mat systems, the relationship between gene and species diversity is clarified and ecological patterns of species occurrence emerge. By combining these ecological patterns with the evolutionary patterns inherently revealed by phylogenetic analysis of gene sequence data, we find that it may be possible to understand microbial biodiversity within these systems by using principles similar to those developed by evolutionary ecologists to understand biodiversity of larger species. We hope that such an approach guides microbial ecologists to a more realistic and predictive understanding of microbial species occurrence and responsiveness in both natural and disturbed habitats.

  14. Mekh-mat entrance examinations problems

    CERN Document Server

    Vardi, I

    2000-01-01

    This paper provides a complete solution set to 25 ``killer problems'' given to Jewish candidates to the Mekh--mat at Moscow State University during the 1970's and 1980's. Typically, the problems are at the mathematical olympiad level and some feature interesting theorems. However, a number of the problems are flawed, or even completely wrong. The paper therefore includes an evaluation of the problems in the style of a referee report.

  15. Carbon and Oxygen Budgets of Hypersaline Cyanobacterial Mats: Effects of Tidal Cycle and Temperature

    Science.gov (United States)

    DesMarais, David J.; Bebout, Brad M.; Carpenter, Steven; Discipulo, Mykell; Turk, Kendra

    2003-01-01

    The hierarchical organization of microbial ecosystems determines the rates of processes that shape Earth#s environment, define the stage upon which major evolutionary events occurred, and create biosignatures in sediments and atmospheres. In cyanobacterial mats, oxygenic photosynthesis provides energy, organic substrates and oxygen to the ecosystem. Incident light changes with depth in the mat, both in intensity and spectral composition, and counteracting gradients of oxygen and sulfide shape the chemical microenvironment. A combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods and to various depths in the mat. Microbiota produce hydrogen, small organic acids, and nitrogen and sulfur species. Such compounds fuel a flow of energy and electrons in these ecosystems and thus shape interactions between groups of microorganisms. Coordinated observations of population distribution, abundance, and activity for an entire community are making fundamental questions in ecology accessible. These questions address those factors that sustain the remarkable diversity of microorganisms that are now being revealed by molecular techniques. These questions also target the processes that shape the various kinds of biosignatures that we will seek, both in ancient rocks from Earth and Mars, and in atmospheres of distant planets beyond our Solar System.

  16. Charpy V, an application in Mat lab

    International Nuclear Information System (INIS)

    The obtained results with the system Charpy VV1 designed in Mat lab for the estimate of parameters of three mathematical models are shown. The adjustment of data is used to determine the fracture energy, the lateral expansion and the percentage of ductility of steels coming from the reactor vessels of Laguna Verde, Veracruz. The data come from test tubes type Charpy V of irradiated material and not irradiated. To verify our results they were compared with those obtained by General Electric of data coming from the Laguna Verde nuclear power plant. (Author)

  17. Mineralogy of iron microbial mats from Loihi Seamount

    OpenAIRE

    BrandyMarieToner; ThelmaSBerquó; F. MarcMichel; AlexisSTempleton; KatrinaJEdwards

    2012-01-01

    Extensive mats of Fe oxyhydroxides and associated Fe-oxidizing microbial organisms form in diverse geochemical settings – freshwater seeps to deep-sea vents – where ever opposing Fe(II)-oxygen gradients prevail. The mineralogy, reactivity, and structural transformations of Fe oxyhydroxides precipitated from submarine hydrothermal fluids within microbial mats remains elusive in active and fossil systems. In response, a study of Fe microbial mat formation at the Loihi Seamount was conducted t...

  18. Mineralogy of Iron Microbial Mats from Loihi Seamount

    OpenAIRE

    Toner, Brandy M.; Berquó, Thelma S.; Michel, F. Marc; Sorensen, Jeffry V.; Templeton, Alexis S.; Edwards, Katrina J.

    2012-01-01

    Extensive mats of Fe oxyhydroxides and associated Fe-oxidizing microbial organisms form in diverse geochemical settings – freshwater seeps to deep-sea vents – where ever opposing Fe(II)-oxygen gradients prevail. The mineralogy, reactivity, and structural transformations of Fe oxyhydroxides precipitated from submarine hydrothermal fluids within microbial mats remains elusive in active and fossil systems. In response, a study of Fe microbial mat formation at the Loihi Seamount was conducted to ...

  19. Mats Reidius : Rootsi taluliit tahab üle minna eurole / Mats Reidius ; interv. Annika Poldre

    Index Scriptorium Estoniae

    Reidius, Mats

    2003-01-01

    Rootsi majandusteadlane Mats Reidius Rootsi põllumajanduse olukorrast enne Rootsi liitumist EL-iga, Rootsi talunike võitudest-kaotustest El-iga ühinemisel, muutustest Rootsi toiduaineturul pärast EL-iga liitumist, Rootsi talunike arvamusest euro kohta

  20. Use of palm-mat geotextiles for rainsplash erosion control

    Science.gov (United States)

    Bhattacharyya, R.; Fullen, M. A.; Davies, K.; Booth, C. A.

    2010-07-01

    Soil detachment by raindrop action (rainsplash erosion) is a very important subprocess of erosion by water. It is a particular problem in the UK as most soils are sandy or loamy sand in texture and lands have gentle to medium slope. However, few studies report potential rainsplash erosion control options under field conditions. Hence, the utilization of palm-mat geotextiles as a rainsplash erosion control technique was investigated at Hilton, east Shropshire, U.K. (52°33'5.7″ N, 2°19'18.3″ W). Geotextile-mats constructed from Borassus aethiopum (Borassus palm of West Africa) and Mauritia flexuosa (Buriti palm of South America) leaves are termed Borassus mats and Buriti mats, respectively. Two-year field experiments were conducted at Hilton to study the effects of emplacing Borassus and Buriti mats on rainsplash erosion of a loamy sand soil. Two sets (12 plots each) of experiments were established to study the effects of these mats on splash height and splash erosion. Splash height needs to be known to assess the transport mechanism of major soil fraction and its constituents on sloping land by rainsplash. In both sets, six randomly-selected plots were covered with mats, and the rest were bare. Results (during 22/01/2007‒23/01/2009; total precipitation = 1731.5 mm) show that Borassus mat-covered plots had ˜ 89% ( P 0.05) effect in rainsplash erosion control during that period, although plots with Buriti mats significantly ( P 0.05) improve selected soil properties (i.e., soil organic matter, particle size distribution, aggregate stability and total soil carbon) as soil organic matter (SOM) input from mat-decomposition was much less than total SOM content. However, the changes in fine and medium sand contents (after 2 years) in the Borassus covered plots were significantly ( P < 0.05; n = 6) related to the total rainsplash erosion during 2007‒2009. Emplacement of Borassus and Buriti mats on bare soils did not decrease SOM contents after 2 years, indicating

  1. Fine-scale distribution patterns of Synechococcus ecological diversity in the microbial mats of Mushroom Spring, Yellowstone National Park

    DEFF Research Database (Denmark)

    Becraft, E.; Cohan, F.; Kühl, Michael;

    2011-01-01

    Past analyses of sequence diversity in high-resolution protein-encoding genes have identified putative ecological species of unicellular cyanobacteria in the genus Synechococcus, which are specialized to 60°C but not 65°C in Mushroom Spring microbial mats. Because these studies were limited to only...

  2. Matting Of Hair Due To ′Sunsilk′ Shampoo

    OpenAIRE

    Nadeem Mohd

    1995-01-01

    Matting of hair been reported from time to time due to treatment of hair with detergent, shampoos, waving lotions, setting lotions and bleaches. A case of matting of hairs in a young girl due to a change in the brand of shampoo is reported.

  3. Matting Of Hair Due To ′Sunsilk′ Shampoo

    Directory of Open Access Journals (Sweden)

    Nadeem Mohd

    1995-01-01

    Full Text Available Matting of hair been reported from time to time due to treatment of hair with detergent, shampoos, waving lotions, setting lotions and bleaches. A case of matting of hairs in a young girl due to a change in the brand of shampoo is reported.

  4. Egg albumen - a promising material for fabrication of nanoporous mats

    Directory of Open Access Journals (Sweden)

    Zhao Lei

    2016-01-01

    Full Text Available The natural protein, egg albumen, is used for fabrication of nanoporous mats by bubbfil electrospinning. In our experiment, starch is used as an additive. By suitable choices of the spinning conditions, a mat with nanopores can be produced, and the spinning process is tenable by controlling the thermodynamic properties of spun solution and spinning environment.

  5. Diversity of mating-type chromosome structures in the yeast Zygosaccharomyces rouxii caused by ectopic exchanges between MAT-like loci.

    Directory of Open Access Journals (Sweden)

    Jun Watanabe

    Full Text Available We investigated sex chromosome diversity in Zygosaccharomyces rouxii (Z. rouxii. In the current study, we show that the organization of the mating-type (MAT locus is highly variable in the Z. rouxii population, indicating the MAT, HML, and HMR loci are translocation hotspots. Although NBRC1130 and CBS732 were originally two stocks of the type strain of the species, only NBRC1130 retains the original karyotype. A reciprocal translocation between the MAT and HMR loci appears to have occurred during the early passage culture of CBS732, which was used for genome sequencing. In NBRC1733, NBRC0686, NBRC0740 and NBRC1053, the terminal region of the chromosome containing the HMR locus was replaced with the chromosomal region to the left of the MAT or HML loci. The translocation events found in NBRC1733, NBRC0686, NBRC0740, and NBRC1053 were reconstructed under our experimental conditions using the DA2 background, and the reconstruction suggests that the frequency of this type of translocation is approximately 10(-7. These results suggest that the MAT and MAT-like loci were the susceptible regions in the genome, and the diversity of mating-type chromosome structures in Z. rouxii was caused by ectopic exchanges between MAT-like loci.

  6. Matérialisme et passions

    OpenAIRE

    Cottegnies, Line; Léon-Miehe, Anne; Pierre LURBE; Moreau, Pierre-François; Thomson, Ann; Weber, Dominique

    2014-01-01

    La modernité, dès ses débuts, attribue un rôle-clef aux passions : qu’elles soient hostiles à la Raison ou au contraire ses alliées, dangereuses ou fascinantes, elles marquent le rôle du corps, du désir, du langage et de l’imagination dans la nature de l’homme. La même époque voit se développer différentes variantes du matérialisme. Presque toutes réévaluent ce que la raison classique avait tendance à réprimer ou à considérer comme révélateur de la faiblesse humaine : le corps et tout ce qui,...

  7. Vizualizace XML schémat

    OpenAIRE

    Slavětínský, Václav

    2008-01-01

    Bakalářská práce se zabývá návrhem a implementací aplikace, která slouží k převodu W3C XML schémat do interaktivního diagramu ve formátu SVG (Scalable Vector Graphics). Diagram poskytuje údaje získané ze schématu ? údaje o elementech a atributech, a jejich přípustné struktuře. Proto je vhodný jako součást dokumentace XML souborů vyhovujících schématu. Generovaná grafika je interaktivní a přehledná, uživatelům má usnadnit pochopení XML dokumentů a orientaci v nich. Aplikace je napsána v jazyce...

  8. Chimie des matériaux hybrides

    OpenAIRE

    Sanchez, Clément

    2013-01-01

    Cours : chimie des matériaux hybrides Depuis plus d’une vingtaine d’années, les méthodes d’élaboration de nanomatériaux inorganiques ou hybrides reposant sur la « chimie douce » suscitent un très fort intérêt, aussi bien dans le monde universitaire qu’industriel. Ces méthodes de synthèse mettent en jeu des réactions de « polymérisation » au sens large s’effectuant à température ambiante, en solvant aqueux ou organique, à partir de précurseurs moléculaires ou nanoparticulaires. Ces conditions ...

  9. The mating type locus (MAT and sexual reproduction of Cryptococcus heveanensis: insights into the evolution of sex and sex-determining chromosomal regions in fungi.

    Directory of Open Access Journals (Sweden)

    Banu Metin

    2010-05-01

    Full Text Available Mating in basidiomycetous fungi is often controlled by two unlinked, multiallelic loci encoding homeodomain transcription factors or pheromones/pheromone receptors. In contrast to this tetrapolar organization, Cryptococcus neoformans/Cryptococcus gattii have a bipolar mating system, and a single biallelic locus governs sexual reproduction. The C. neoformans MAT locus is unusually large (>100 kb, contains >20 genes, and enhances virulence. Previous comparative genomic studies provided insights into how this unusual MAT locus might have evolved involving gene acquisitions into two unlinked loci and fusion into one contiguous locus, converting an ancestral tetrapolar system to a bipolar one. Here we tested this model by studying Cryptococcus heveanensis, a sister species to the pathogenic Cryptococcus species complex. An extant sexual cycle was discovered; co-incubating fertile isolates results in the teleomorph (Kwoniella heveanensis with dikaryotic hyphae, clamp connections, septate basidia, and basidiospores. To characterize the C. heveanensis MAT locus, a fosmid library was screened with C. neoformans/C. gattii MAT genes. Positive fosmids were sequenced and assembled to generate two large probably unlinked MAT gene clusters: one corresponding to the homeodomain locus and the other to the pheromone/receptor locus. Strikingly, two divergent homeodomain genes (SXI1, SXI2 are present, similar to the bE/bW Ustilago maydis paradigm, suggesting one or the other homeodomain gene was recently lost in C. neoformans/C. gattii. Sequencing MAT genes from other C. heveanensis isolates revealed a multiallelic homeodomain locus and at least a biallelic pheromone/receptor locus, similar to known tetrapolar species. Taken together, these studies reveal an extant C. heveanensis sexual cycle, define the structure of its MAT locus consistent with tetrapolar mating, and support the proposed evolutionary model for the bipolar Cryptococcus MAT locus revealing

  10. Elastic-plastic behavior of non-woven fibrous mats

    Science.gov (United States)

    Silberstein, Meredith N.; Pai, Chia-Ling; Rutledge, Gregory C.; Boyce, Mary C.

    2012-02-01

    Electrospinning is a novel method for creating non-woven polymer mats that have high surface area and high porosity. These attributes make them ideal candidates for multifunctional composites. Understanding the mechanical properties as a function of fiber properties and mat microstructure can aid in designing these composites. Further, a constitutive model which captures the membrane stress-strain behavior as a function of fiber properties and the geometry of the fibrous network would be a powerful design tool. Here, mats electrospun from amorphous polyamide are used as a model system. The elastic-plastic behavior of single fibers are obtained in tensile tests. Uniaxial monotonic and cyclic tensile tests are conducted on non-woven mats. The mat exhibits elastic-plastic stress-strain behavior. The transverse strain behavior provides important complementary data, showing a negligible initial Poisson's ratio followed by a transverse:axial strain ratio greater than -1:1 after an axial strain of 0.02. A triangulated framework has been developed to emulate the fibrous network structure of the mat. The micromechanically based model incorporates the elastic-plastic behavior of single fibers into a macroscopic membrane model of the mat. This representative volume element based model is shown to capture the uniaxial elastic-plastic response of the mat under monotonic and cyclic loading. The initial modulus and yield stress of the mat are governed by the fiber properties, the network geometry, and the network density. The transverse strain behavior is linked to discrete deformation mechanisms of the fibrous mat structure including fiber alignment, fiber bending, and network consolidation. The model is further validated in comparison to experiments under different constrained axial loading conditions and found to capture the constraint effect on stiffness, yield, post-yield hardening, and post-yield transverse strain behavior. Due to the direct connection between

  11. Benthic Marine Cyanobacterial Mat Ecosystems: Biogeochemistry and Biomarkers

    Science.gov (United States)

    DesMarais, David J.; DeVincenzi, Donald (Technical Monitor)

    2001-01-01

    Cyanobacterial mats are complete ecosystems that can include processes of primary production, diagenesis and lithification. Light sustains oxygenic photosynthesis, which in turn provides energy, organic matter and oxygen to the community. Due to both absorption and scattering phenomena, incident light is transformed with depth in the mat, both in intensity and spectral composition. Mobile photo synthesizers optimize their position with respect to this light gradient. When photosynthesis ceases at night, the upper layers of the mat become reduced and sulfidic. Counteracting gradients of oxygen and sulfide combine to provide daily-contrasting environments separated on a scale of a few mm. The functional complexity of mats, coupled with the highly proximal and ordered spatial arrangement of biota, offers the potential for a staggering number of interactions. At a minimum, the products of each functional group of microorganisms affect the other groups both positively and negatively. For example, cyanobacteria generate organic matter (potential substrates) but also oxygen (a toxin for many anaerobes). Anaerobic activity recycles nutrients to the photosynthesizers but also generates potentially toxic sulfide. The combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods, and to various depths in the mat. Observations of mats have produced numerous surprises. For example, obligately anaerobic processes can occur in the presence of abundant oxygen, highly reduced gases are produced in the presence of abundant sulfate, meiofauna thrive at high sulfide concentrations, and the mats' constituent populations respond to environmental changes in complex ways. While photosynthetic bacteria dominate the biomass and productivity of the mat, nonphotosynthetic, anaerobic processes constitute the ultimate biological filter on the ecosystem's emergent biosignatures, including those

  12. Characterization of sulfide-oxidizing microbial mats developed inside a full-scale anaerobic digester employing biological desulfurization.

    Science.gov (United States)

    Kobayashi, Takuro; Li, Yu-You; Kubota, Kengo; Harada, Hideki; Maeda, Takeki; Yu, Han-Qing

    2012-01-01

    The microbial mats responsible for biological desulfurization from biogas in a full-scale anaerobic digester were characterized in terms of their structure, as well as their chemical and microbial properties. Filament-shaped elemental sulfur 100-500 μm in length was shown to cover the mats, which cover the entire headspace of the digester. This is the first report on filamentous sulfur production in a non-marine environment. The results of the analysis of the mats suggest that the key players in the sulfide oxidation and sulfur production in the bio-desulfurization in the headspace of the digester were likely to be two sulfide-oxidizing bacteria (SOB) species related to Halothiobacillus neapolitanus and Sulfurimonas denitrificans, and that the microbial community, cell density, activity for sulfide oxidation varied according to the environmental conditions at the various locations of the mats. Since the water and nutrients necessary for the SOB were provided by the digested sludge droplets deposited on the mats, and our results show that a higher rate of sulfide oxidation occurred with more frequent digested sludge deposition, the habitat of the SOB needs to be made in the lower part of the headspace near the liquid level of the digested sludge to maintain optimal conditions. PMID:21735263

  13. Geosynthetic Reinforcement of Sand-Mat Layer above Soft Ground

    Directory of Open Access Journals (Sweden)

    Jong-Beom Park

    2013-11-01

    Full Text Available In order to improve the bearing capacity of soft ground for the purpose of getting trafficability of construction vehicles, the reinforcement of geosynthetics for sand-mat layers on soft ground has often been used. As the strength of the geosynthetics increases, and the sand-mat system becomes stronger, the bearing capacity of sand-mat systems will be increased. The depths of geosynthetics, reinforced in sand-mat layers, were varied with respect to the width of footing. The tensile strengths of geosynthetics were also varied to evaluate the effect of reinforcement on the bearing capacity of soft ground. The dispersion angles, with varying sand-mat thicknesses, were also determined in consideration of the tensile strength of geosynthetics and the depths of reinforcement installations. The bearing capacity ratios, with the variation of footing width and reinforced embedment depth, were determined for the geosynthetics-only, reinforced soft ground, 1-layer sand-mat system and 2-layer sand-mat system against the non-reinforced soft ground. From the test results of various models, a principle that better explains the concept of geosynthetic reinforcement has been found. On the basis of this principle, a new bearing capacity equation for practical use in the design of geosynthetically reinforced soft ground has been proposed by modifying Yamanouchi’s equation.

  14. Monitoring Survival and Preservation of Recent Cyanobacterial Mats

    Science.gov (United States)

    Chacon, Elizabeth; Negron-Mendoza, Alicia; Camargo, Claudia

    2010-05-01

    Through geobiological evolution cyanobacterial mats have played a fundamental role through the development of early microbial carbonate ecosystems and through the sustainment of major biogeochemical cycling in the biosphere; nonetheless their sedimentary record is relatively modest in comparison with their biological impact; this apparent under-representation in the fossil record may be due to their intrinsic poor preservation potential but also to our inability to recognize some subtle microbial signatures. Modern studies on cyanobacterial mats involve high-tech molecular approaches to identify, analyze and even quantify the genetic diversity of ancient and modern microbial mats, yet the physical changes of mats, their survival and preservation potential, remain almost unknown and experimentally poorly explored. If we are going to succeed in the astrobiological quest for traces of life we should develop integrated methods and diagnostic features to address biosignatures at both, the phenotypic and genotypic levels when possible. The correct recognition and interpretation of biosignatures in this emerging field needs, aside these fine molecular tools, plain experimental approaches to test microbial resistance, survival and preservation potential of microbial mats after exposure to diagenetic changes. In this work we study some effects on fresh slices of cyanobacterial mats and cultures of specific external simulated agents that normally occur during diagenesis such as dehydratation, heat, abrasion or pressure among others. Samples from different cyanobacterial communities associated to carbonates collected from different rivers and falls around Mexico were subjected to same lab procedures. Physical and textural changes were monitored through microscopic analysis where cell integrity and mat cohesiveness were analyzed before and after treatment. Preliminary results show that mats enriched in halite and clay sediments were preferentially preserved; however those mats

  15. Methanogenesis from Methylated Amines in a Hypersaline Algal Mat

    OpenAIRE

    King, Gary M.

    1988-01-01

    Methane ebullition and high rates of methane production were observed in sediments of a hypersaline pond (180‰) which contained sulfate in excess of 100 mM. The highest rates of methane production were observed in surface sediments associated with an algal mat dominated by a Spirulina sp. The mat contained a methylated amine, glycine betaine (GBT), at levels which accounted for up to 20% of the total mat nitrogen. GBT was apparently the source of trimethylamine (TMA), which was also present i...

  16. Electrospun graphene-ZnO nanofiber mats for photocatalysis applications

    International Nuclear Information System (INIS)

    Graphene-decorated zinc oxide (G-ZnO) nanofibers were fabricated, for the first time, by electrospinning. The effect of graphene concentration on the properties of G-ZnO mats were investigated by scanning electron microscopy, X-ray diffraction, Raman spectroscopy, and thermo gravimetric analysis. The G-ZnO mats decorated with 0.5 wt.% of graphene showed excellent photocatalytic activity through degradation of methylene blue under UV irradiation. The highest photocatalytic activity (80% degradation) was observed for 0.5 wt.% G-ZnO mats annealed at 400 °C after 4 h of UV irradiation

  17. Electrospun graphene-ZnO nanofiber mats for photocatalysis applications

    Science.gov (United States)

    An, Seongpil; Joshi, Bhavana N.; Lee, Min Wook; Kim, Na Young; Yoon, Sam S.

    2014-03-01

    Graphene-decorated zinc oxide (G-ZnO) nanofibers were fabricated, for the first time, by electrospinning. The effect of graphene concentration on the properties of G-ZnO mats were investigated by scanning electron microscopy, X-ray diffraction, Raman spectroscopy, and thermo gravimetric analysis. The G-ZnO mats decorated with 0.5 wt.% of graphene showed excellent photocatalytic activity through degradation of methylene blue under UV irradiation. The highest photocatalytic activity (80% degradation) was observed for 0.5 wt.% G-ZnO mats annealed at 400 °C after 4 h of UV irradiation.

  18. Non-native seagrass Halophila stipulacea forms dense mats under eutrophic conditions in the Caribbean

    Science.gov (United States)

    van Tussenbroek, B. I.; van Katwijk, M. M.; Bouma, T. J.; van der Heide, T.; Govers, L. L.; Leuven, R. S. E. W.

    2016-09-01

    Seagrasses comprise 78 species and are rarely invasive. But the seagrass Halophila stipulacea, firstly recorded in the Caribbean in the year 2002, has spread quickly throughout the region. Previous works have described this species as invasive in the Caribbean, forming dense mats that exclude native seagrass species. During a reconnaissance field survey of Caribbean seagrass meadows at the islands of Bonaire and Sint Maarten in 2013, we observed that this species was only extremely dense at 5 out of 10 studied meadows. Compared to areas with sparse growth of H. stipulacea, these dense meadows showed consistently higher nutrient concentrations, as indicated by higher leaf tissue N contents of the seagrass Thalassia testudinum (dense when C:N 11.3). Thus, the potential invasiveness of this non-native seagrass most likely depends on the environmental conditions, especially the nutrient concentrations.

  19. Thermal Protection System Materials (TPSM): 3D MAT Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The 3D MAT Project seeks to design and develop a game changing Woven Thermal Protection System (TPS) technology tailored to meet the needs of the Orion...

  20. Structure and function of cyanobacterial mats in wetlands of Belize

    Czech Academy of Sciences Publication Activity Database

    Komárek, Jiří; Sirová, D.; Komárková-Legnerová, Jaroslava; Rejmánková, E.

    Boca Raton : CRC Press, 2015 - (Entry, J.; Gottlieb, A.; Jayachandran, K.; Ogram, A.), 194-217 ISBN 978-1-4987-1183-8 Institutional support: RVO:67985939 ; RVO:60077344 Keywords : Belize * swamps * cyanobacterial mats Subject RIV: EF - Botanics

  1. Extraction of High Molecular Weight DNA from Microbial Mats

    OpenAIRE

    Bey, Benjamin S.; Fichot, Erin B.; Norman, R. Sean

    2011-01-01

    Successful and accurate analysis and interpretation of metagenomic data is dependent upon the efficient extraction of high-quality, high molecular weight (HMW) community DNA. However, environmental mat samples often pose difficulties to obtaining large concentrations of high-quality, HMW DNA. Hypersaline microbial mats contain high amounts of extracellular polymeric substances (EPS)1 and salts that may inhibit downstream applications of extracted DNA. Direct and harsh methods are often used i...

  2. Photosynthate Partitioning and Fermentation in Hot Spring Microbial Mat Communities

    OpenAIRE

    Nold, S C; Ward, D M

    1996-01-01

    Patterns of (sup14)CO(inf2) incorporation into molecular components of the thermophilic cyanobacterial mat communities inhabiting hot springs located in Yellowstone National Park and Synechococcus sp. strain C1 were investigated. Exponentially growing Synechococcus sp. strain C1 partitioned the majority of incorporated (sup14)CO(inf2) into protein, low-molecular-weight metabolites, and lipid fractions (45, 22, and 18% of total incorporated carbon, respectively). In contrast, mat cores from va...

  3. NITRIFICATION AND NITRIFYING BACTERIA IN A COASTAL MICROBIAL MAT

    Directory of Open Access Journals (Sweden)

    Haoxin eFan

    2015-12-01

    Full Text Available The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA or ammonium-oxidizing bacteria (AOB. We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is present in both AOA and AOB, were assessed and the potential nitrification rates in these mats were measured. The potential nitrification rates in the three mat types were highest in autumn and lowest in summer. AOB and AOA amoA genes were present in all three mat types. The composition of the AOA and AOB communities in the mats of the tidal and intertidal stations, based on the diversity of amoA, were similar and clustered separately from the supratidal microbial mat. In all three mats AOB amoA genes were significantly more abundant than AOA amoA genes. The abundance of neither AOB nor AOA amoA genes correlated with the potential nitrification rates, but AOB amoA transcripts were positively correlated with the potential nitrification rate. The composition and abundance of amoA genes seemed to be partly driven by salinity, ammonium, temperature and the nitrate/nitrite concentration. We conclude that AOB are responsible for the bulk of the ammonium oxidation in these coastal microbial mats.

  4. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat

    Science.gov (United States)

    Fan, Haoxin; Bolhuis, Henk; Stal, Lucas J.

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is present in both AOA and AOB, were assessed and the potential nitrification rates in these mats were measured. The potential nitrification rates in the three mat types were highest in autumn and lowest in summer. AOB and AOA amoA genes were present in all three mat types. The composition of the AOA and AOB communities in the mats of the tidal and intertidal stations, based on the diversity of amoA, were similar and clustered separately from the supratidal microbial mat. In all three mats AOB amoA genes were significantly more abundant than AOA amoA genes. The abundance of neither AOB nor AOA amoA genes correlated with the potential nitrification rates, but AOB amoA transcripts were positively correlated with the potential nitrification rate. The composition and abundance of amoA genes seemed to be partly driven by salinity, ammonium, temperature, and the nitrate/nitrite concentration. We conclude that AOB are responsible for the bulk of the ammonium oxidation in these coastal microbial mats. PMID:26648931

  5. Characterization of Carbon Mat Thermoplastic Composites: Flow and Mechanical Properties

    OpenAIRE

    Caba, Aaron C.

    2005-01-01

    Carbon mat thermoplastics (CMT) consisting of 12.7 mm or 25.4 mm long, 7.2 micrometer diameter, chopped carbon fibers in a polypropylene (PP) or poly(ethylene terephthalate) (PET) thermoplastic matrix were manufactured using the wetlay technique. This produces a porous mat with the carbon fibers well dispersed and randomly oriented in a plane. CMT composites offer substantial cost and weight savings over typical steel construction in new automotive applications. In production vehicles, aut...

  6. The biogeochemistry of microbial mats, stromatolites and the ancient biosphere

    Science.gov (United States)

    Desmarais, D. J.; Canfield, D. E.

    1991-01-01

    Stromatolites offer an unparalleled geologic record of early life, because they constitute the oldest and most abundant recognizable remains of microbial ecosystems. Microbial mats are living homologs of stromatolites; thus, the physiology of the microbiota as well as the processes which create those features of mats (e.g., biomarker organic compounds, elemental and stable isotopic compositions) which are preserved in the ancient record. Observations of the carbon isotopic composition (delta C-13) of stromatolites and microbial mats were made and are consistent with the hypothesis that atmospheric CO2 concentrations have declined by at least one to two orders of magnitude during the past 2.5 Ga. Whereas delta C-13 values of carbonate carbon average about 0 permil during both the early and mid-Proterozoic, the delta C-13 values of stromatolitic organic matter increase from an average of -35 between 2.0 and 2.6 Ga ago to an average of about -28 about 1.0 Ga ago. Modern microbial mats in hypersaline environments have delta C-13 values typically in the range of -5 to -9, relative to an inorganic bicarbonate source at 0 permil. Both microbial mats and pur cultures of cyanobacteria grown in waters in near equilibrium with current atmospheric CO2 levels exhibit minimal discrimination against C-13. In contrast, hot spring cyanobacterial mats or cyanobacterial cultures grown under higher CO2 levels exhibit substantially greater discrimination. If care is taken to compare modern mats with stromatolites from comparable environments, it might be possible to estimate ancient levels of atmospheric CO2. In modern microbial mats, a tight coupling exists between photosynthetic organic carbon production and subsequent carbon oxidation, mostly by sulfate reduction. The rate of one process fuels a high rate of the other, with much of the sulfate reduction occurring within the same depth interval as oxygenic photosynthesis. Other aspects of this study are presented.

  7. Cyanobacterial reuse of extracellular organic carbon in microbial mats.

    Science.gov (United States)

    Stuart, Rhona K; Mayali, Xavier; Lee, Jackson Z; Craig Everroad, R; Hwang, Mona; Bebout, Brad M; Weber, Peter K; Pett-Ridge, Jennifer; Thelen, Michael P

    2016-05-01

    Cyanobacterial organic matter excretion is crucial to carbon cycling in many microbial communities, but the nature and bioavailability of this C depend on unknown physiological functions. Cyanobacteria-dominated hypersaline laminated mats are a useful model ecosystem for the study of C flow in complex communities, as they use photosynthesis to sustain a more or less closed system. Although such mats have a large C reservoir in the extracellular polymeric substances (EPSs), the production and degradation of organic carbon is not well defined. To identify extracellular processes in cyanobacterial mats, we examined mats collected from Elkhorn Slough (ES) at Monterey Bay, California, for glycosyl and protein composition of the EPS. We found a prevalence of simple glucose polysaccharides containing either α or β (1,4) linkages, indicating distinct sources of glucose with differing enzymatic accessibility. Using proteomics, we identified cyanobacterial extracellular enzymes, and also detected activities that indicate a capacity for EPS degradation. In a less complex system, we characterized the EPS of a cyanobacterial isolate from ES, ESFC-1, and found the extracellular composition of biofilms produced by this unicyanobacterial culture were similar to that of natural mats. By tracing isotopically labeled EPS into single cells of ESFC-1, we demonstrated rapid incorporation of extracellular-derived carbon. Taken together, these results indicate cyanobacteria reuse excess organic carbon, constituting a dynamic pool of extracellular resources in these mats. PMID:26495994

  8. IAEA surveillance data administration within Mat-DB

    International Nuclear Information System (INIS)

    Full text: JRC-IE has developed a web-enabled materials database (Mat-DB) for storing materials test data resulting from international research projects together with other documentation in a related document management database (DoMa) providing fast access to confidential and public data sets. The databases are implemented in the secure ODIN portal: https://odin.jrc.ec.europa.eu of JRC-IE. Mat-DB covers thermo-mechanical and thermo-physical properties data of engineering alloys at low, elevated and high temperatures for base materials and joints, including irradiated materials for nu-clear fission and fusion applications, thermal barrier coated materials for gas turbines and properties of corroded materials. The corrosion part refers to weight gain/loss data of high temperature exposed engineering alloys and ceramic materials. For each test type the database structure reflects international test standards and recommendations. Mat-DB features an extensive library of evaluation programs for web-enabled assessment of uni-axial creep, fatigue, crack growth and high temperature corrosion properties. Evaluations can be performed after data retrieval or independently of Mat-DB by transferring other materials data in a given format to the programs. The fast evaluation processes help the user to get a detailed data analysis or data extrapolation for component design and life-time prediction. Within an bi-lateral agreement Mat-DB hosts also thousands IAEA surveillance data of reactor pressure vessel materials from different nuclear power plants of their member states. These tensile and impact materials data tested before and after irradiation are uploaded in a confidential area of Mat-DB only accessible for the entitled IAEA administrators. The paper provides an overview over: - reflection on the complexity of IAEA data transfer into Mat-DB; - implementation of standardized XML technology to ease complex data exchange in the future, - security, access rights and data

  9. Two-step activation of meiosis by the mat1 locus in Schizosaccharomyces pombe

    DEFF Research Database (Denmark)

    Willer, M; Hoffmann, Ulla-Lisbeth; Styrkársdóttir, U;

    1995-01-01

    The mat1 locus is a key regulator of both conjugation and meiosis in the fission yeast Schizosaccharomyces pombe. Two alternative DNA segments of this locus, mat1-P and mat1-M, specify the haploid cell types (Plus and Minus). Each segment includes two genes: mat1-P includes mat1-Pc and mat1-Pm......, while mat1-M includes mat1-Mc and mat1-Mm. The mat1-Pc and mat1-Mc genes are responsible for establishing the pheromone communication system that mediates conjugation between P and M cells, while all four mat1 genes are required for meiosis in diploid P/M cells. Our understanding of the initiation of...... meiosis is based largely on indirect observations, and a more precise investigation of these events was required to define the interaction between the mat1 genes. Here we resolve this issue using synthetic pheromones and P/M strains with mutations in either mat1-Pc or mat1-Mc. Our results suggest a model...

  10. Extraction of high molecular weight DNA from microbial mats.

    Science.gov (United States)

    Bey, Benjamin S; Fichot, Erin B; Norman, R Sean

    2011-01-01

    Successful and accurate analysis and interpretation of metagenomic data is dependent upon the efficient extraction of high-quality, high molecular weight (HMW) community DNA. However, environmental mat samples often pose difficulties to obtaining large concentrations of high-quality, HMW DNA. Hypersaline microbial mats contain high amounts of extracellular polymeric substances (EPS)1 and salts that may inhibit downstream applications of extracted DNA. Direct and harsh methods are often used in DNA extraction from refractory samples. These methods are typically used because the EPS in mats, an adhesive matrix, binds DNA during direct lysis. As a result of harsher extraction methods, DNA becomes fragmented into small sizes. The DNA thus becomes inappropriate for large-insert vector cloning. In order to circumvent these limitations, we report an improved methodology to extract HMW DNA of good quality and quantity from hypersaline microbial mats. We employed an indirect method involving the separation of microbial cells from the background mat matrix through blending and differential centrifugation. A combination of mechanical and chemical procedures was used to extract and purify DNA from the extracted microbial cells. Our protocol yields approximately 2 μg of HMW DNA (35-50 kb) per gram of mat sample, with an A(260/280) ratio of 1.6. Furthermore, amplification of 16S rRNA genes suggests that the protocol is able to minimize or eliminate any inhibitory effects of contaminants. Our results provide an appropriate methodology for the extraction of HMW DNA from microbial mats for functional metagenomic studies and may be applicable to other environmental samples from which DNA extraction is challenging. PMID:21775955

  11. Vast laminated diatom mat deposits from the west low-latitude Pacific Ocean in the last glacial period

    Institute of Scientific and Technical Information of China (English)

    ZHAI Bin; LI Tie Gang; CHANG Feng Ming; CAO Qi Yuan

    2009-01-01

    Diatoms are one of the predominant contributors to global carbon fixation by accounting for over 40% of total oceanic primary production and dominate export production. They play a significant role in marine biogeochemistry cycle. The diatom mat deposits are results of vast diatoms bloom. By analysis of diatom mats in 136°00'-140°00'E, 15°00'-21°00'N, Eastern Philippines Sea, we identified the spe-cies of the diatoms as giant Ethmodiscus rex (Wallich) Hendey. AMS ~(14)C dating shows that the sedi-ments rich in diatom mats occurred during 16000-28600 a B.P., which means the bloom mainly occurred during the last glacial period, while there are no diatom mat deposits in other layers. Preliminary analysis indicates that Antarctic Intermediate Water (AAIW) expanded northward and brought silicate-rich water into the area, namely, silicon leakage processes caused the bloom of diatoms. In addition, the increase of iron input is one of the main reasons for the diatom bloom.

  12. Electrospun Nanofiber Mats as "Smart Surfaces" for Desorption Electrospray Ionization Mass Spectrometry (DESI MS)-Based Analysis and Imprint Imaging.

    Science.gov (United States)

    Hemalatha, R G; Ganayee, Mohd Azhardin; Pradeep, T

    2016-06-01

    In this paper, desorption electrospray ionization mass spectrometry (DESI MS)-based molecular analysis and imprint imaging using electrospun nylon-6 nanofiber mats are demonstrated for various analytical contexts. Uniform mats of varying thicknesses composed of ∼200 nm diameter fibers were prepared using needleless electrospinning. Analytical applications requiring rapid understanding of the analytes in single drops, dyes, inks, and/or plant extracts incorporated directly into the nanofibers are discussed with illustrations. The possibility to imprint patterns made of printing inks, plant parts (such as petals, leaves, and slices of rhizomes), and fungal growth on fruits with their faithful reproductions on the nanofiber mats is illustrated with suitable examples. Metabolites were identified by tandem mass spectrometry data available in the literature and in databases. The results highlight the significance of electrospun nanofiber mats as smart surfaces to capture diverse classes of compounds for rapid detection or to imprint imaging under ambient conditions. Large surface area, appropriate chemical functionalities exposed, and easiness of desorption due to weaker interactions of the analyte species are the specific advantages of nanofibers for this application. PMID:27159150

  13. Artificial soft sediment resuspension and high density opportunistic macroalgal mat fragmentation as method for increasing sediment zoobenthic assemblage diversity in a eutrophic lagoon.

    Science.gov (United States)

    Martelloni, Tatiana; Tomassetti, Paolo; Gennaro, Paola; Vani, Danilo; Persia, Emma; Persiano, Marco; Falchi, Riccardo; Porrello, Salvatore; Lenzi, Mauro

    2016-09-15

    Superficial soft sediment resuspension and partial fragmentation of high density opportunistic macroalgal mats were investigated by boat to determine the impact on zoobenthic assemblages in a eutrophic Mediterranean lagoon. Sediment resuspension was used to oxidise superficial organic sediments as a method to counteract the effects of eutrophication. Likewise, artificial decay of macroalgal mat was calculated to reduce a permanent source of sediment organic matter. An area of 9ha was disturbed (zone D) and two other areas of the same size were left undisturbed (zones U). We measured chemical-physical variables, estimated algal biomass and sedimentary organic matter, and conducted qualitative and quantitative determinations of the zoobenthic species detected in sediment and among algal mats. The results showed a constant major reduction in labile organic matter (LOM) and algal biomass in D, whereas values in U remained stable or increased. In the three zones, however, bare patches of lagoon bed increased in size, either by direct effect of the boats in D or by anaerobic decay of the algal mass in U. Zoobenthic assemblages in algal mats reduced the number of species in D, probably due to the sharp reduction in biomass, but remained stable in U, whereas in all three areas abundance increased. Sediment zoobenthic assemblages increased the number of species in D, as expected, due to drastic reduction in LOM, whereas values in U remained stable and again abundance increased in all three zones. In conclusion, we confirmed that reduction of sediment organic load enabled an increase in the number of species, while the algal mats proved to be an important substrate in the lagoon environment for zoobenthic assemblages, especially when mat alternated with bare intermat areas of lagoon bed. Sediment resuspension is confirmed as a management criterion for counteracting the effects of eutrophication and improving the biodiversity of zoobenthic assemblages in eutrophic lagoon

  14. Microcosm experiments of oil degradation by microbial mats

    International Nuclear Information System (INIS)

    Several microcosm experiments were run in parallel to evaluate the efficiency of microbial mats for crude oil degradation as compared with physico-chemical weathering. The oils used in the experiments constituted representative examples of those currently used for commercial purposes. One was aliphatic and of low viscosity (33.4 American Petroleum Institute degrees, o API) and the other was predominantly aromatic, with high sulphur content (ca. 2.7%) and viscosity (16.6o API). After crude oil introduction, the microcosms were kept under cyclic changes in water level to mimic coastal tidal movements. The transformations observed showed that water weathering leads to more effective and rapid elimination of low molecular weight hydrocarbons than microbial mat metabolism, e.g. n-alkanes with chain length shorter than n-pentadecane or n-heptadecane, regular isoprenoid hydrocarbons with chain length lower than C16 or C18 or lower molecular weight naphthalenes. Microbial mats preserved these hydrocarbons from volatilization and water washing. However, hydrocarbons of lower volatility such as the C24-C3 n-alkanes or containing nitrogen atoms, e.g. carbazoles, were eliminated in higher proportion by microbial mats than by water weathering. The strong differences in composition between the two oils used for the experiments were also reflected in significant differences between water weathering and microbial mat biodegradation. Higher oil viscosity seemed to hinder the former but not the later

  15. Microcosm experiments of oil degradation by microbial mats.

    Science.gov (United States)

    de Oteyza, Tirso García; Grimalt, Joan O; Llirós, Marc; Esteve, Isabel

    2006-03-15

    Several microcosm experiments were run in parallel to evaluate the efficiency of microbial mats for crude oil degradation as compared with physico-chemical weathering. The oils used in the experiments constituted representative examples of those currently used for commercial purposes. One was aliphatic and of low viscosity (33.4 American Petroleum Institute degrees, degrees API) and the other was predominantly aromatic, with high sulphur content (ca. 2.7%) and viscosity (16.6 degrees API). After crude oil introduction, the microcosms were kept under cyclic changes in water level to mimic coastal tidal movements. The transformations observed showed that water weathering leads to more effective and rapid elimination of low molecular weight hydrocarbons than microbial mat metabolism, e.g. n-alkanes with chain length shorter than n-pentadecane or n-heptadecane, regular isoprenoid hydrocarbons with chain length lower than C16 or C18 or lower molecular weight naphthalenes. Microbial mats preserved these hydrocarbons from volatilization and water washing. However, hydrocarbons of lower volatility such as the C24-C30 n-alkanes or containing nitrogen atoms, e.g. carbazoles, were eliminated in higher proportion by microbial mats than by water weathering. The strong differences in composition between the two oils used for the experiments were also reflected in significant differences between water weathering and microbial mat biodegradation. Higher oil viscosity seemed to hinder the former but not the later. PMID:15935450

  16. Thermomechanical analyses of phenolic foam reinforced with glass fiber mat

    International Nuclear Information System (INIS)

    Highlights: • Over 10% glass fiber was used to reinforce phenolic foam in the shape of glass fiber mat. • Nucleating agents were used together with glass fiber mat and improved tensile strength of phenolic foam by 215.6%. • Nucleating agents lead to a smaller bubble size of phenolic foam. • The glass transition temperature of phenolic foam remained unchanged during the reinforcement. - Abstract: In this paper, thermomechanical analysis (TMA) and dynamic mechanical analysis were employed to study the properties of phenolic foam reinforced with glass fiber mat. Unreinforced phenolic foam was taken as the control sample. Mechanical tests and scanning electron microscopy were performed to confirm the results of TMA. The results show that glass fiber mat reinforcement improves the mechanical performance of phenolic foam, and nucleating agents improve it further. Phenolic foam reinforced with glass fiber mat has a smaller thermal expansion coefficient compared with unreinforced foam. The storage modulus of the reinforced phenolic foam is also higher than that in unreinforced foam, whereas the loss modulus of the former is lower than that of the latter. The glass transition temperature of the phenolic foam matrix remains unchanged during the reinforcement

  17. Electrospun chitosan/polyvinyl alcohol nanofibre mats for wound healing.

    Science.gov (United States)

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Opanasopit, Praneet

    2014-04-01

    Chitosan (CS) aqueous salt blended with polyvinyl alcohol (PVA) nanofibre mats was prepared by electrospinning. CS was dissolved with hydroxybenzotriazole (HOBt), thiamine pyrophosphate (TPP) and ethylenediaminetetraacetic acid (EDTA) in distilled water without the use of toxic or hazardous solvents. The CS aqueous salts were blended with PVA at different weight ratios, and the effect of the solution ratios was investigated. The morphologies and mechanical and swelling properties of the generated fibres were analysed. Indirect cytotoxicity studies indicated that the CS/PVA nanofibre mats were non-toxic to normal human fibroblast cells. The CS-HOBt/PVA and CS-EDTA/PVA nanofibre mats demonstrated satisfactory antibacterial activity against both gram-positive and gram-negative bacteria, and an in vivo wound healing test showed that the CS-EDTA/PVA nanofibre mats performed better than gauze in decreasing acute wound size during the first week after tissue damage. In conclusion, the biodegradable, biocompatible and antibacterial CS-EDTA/PVA nanofibre mats have potential for use as wound dressing materials. PMID:22925275

  18. Pressure Mapping Mat for Tele-Home Care Applications

    Science.gov (United States)

    Saenz-Cogollo, Jose Francisco; Pau, Massimiliano; Fraboni, Beatrice; Bonfiglio, Annalisa

    2016-01-01

    In this paper we present the development of a mat-like pressure mapping system based on a single layer textile sensor and intended to be used in home environments for monitoring the physical condition of persons with limited mobility. The sensor is fabricated by embroidering silver-coated yarns on a light cotton fabric and creating pressure-sensitive resistive elements by stamping the conductive polymer poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate) (PEDOT:PSS) at the crossing points of conductive stitches. A battery-operated mat prototype was developed and includes the scanning circuitry and a wireless communication module. A functional description of the system is presented together with a preliminary experimental evaluation of the mat prototype in the extraction of plantar pressure parameters. PMID:26978369

  19. HiRadMat High Intensity Beam Commissioning

    CERN Document Server

    Blanco Sancho, J; Cornelis, K; Goddard, B; Hessler, C; Jensen, L; Kain, V; Meddahi, M; Theis, C; Vincke, H; Vojtyla, P; Wenninger, J

    2011-01-01

    On Wednesday 14 September and Monday 19 September 2011, high intensity proton beam was sent for the first time down the HiRadMat primary beam line (thereafter TT66), onto the beam dump located in the HiRadMat experimental cavern. This high intensity beam commissioning followed a first period of low intensity beam commissioning which took place in June 2011. During the low intensity beam commissioning, it was checked that all beam line equipment operated as specified. Energy matching and beam steering were performed; optics checks did not reveal any optical errors. Aperture measurements confirmed that there were no bottlenecks. Radiation protection monitoring worked as expected and the measurements were within expectation [1]. With the completion of the HiRadMat ventilation system, the high intensity beam commissioning could successfully continue in September 2011. The main outcome is reported in this note.

  20. NANOFIBROUS MATS WITH BIRD'S NEST PATTERNS BY ELECTROSPINNING

    Institute of Scientific and Technical Information of China (English)

    Xiang-yu Ye; Xiao-jun Huang; Zhi-kang Xu

    2012-01-01

    Electrospun material with bio-inspired ordered architectures and patterns is very interesting,yet remains a challenge.We report here that nanofibrous mats with bird's nest patterned structures can be directly electrospun from chlorinated polypropylene solutions doped with an ionic liquid.The solution viscosity and the ionic liquid content are two dominant factors to influence the lopological morphology of the nanofibrous mats.The patterned structures can be further modulated by the collection time of electrospinning,the humidity of environment and the design of collector.We suggest the electrostatic repulsion between the residual charges of the mat surface and the upcoming nanofibers plays a key role in the formation of the bird's nest patterns.

  1. Storage of yerba maté in controlled atmosphere

    Directory of Open Access Journals (Sweden)

    Sarah Lemos Cogo Prestes

    2014-04-01

    Full Text Available The aim of this study was to evaluate the effect of controlled atmosphere in the change of color, chlorophyll degradation and phenolic compounds concentration in yerba maté thickly ground (“cancheada” and thinly milled (“socada”. Yerba maté samples from the towns of Arvorezinha (RS - Brazil and São Mateus do Sul (PR - Brazil were stored in four levels of oxygen (1, 3, 6 and 20.9kPa of O2 and four levels of carbon dioxide (0, 3, 6 and 18kPa of CO2 and then were analyzed, after nine months of storage. According to the results, the O2 partial pressure reduction decreased the loss of green coloration, kept a higher content of chlorophylls and of total phenolic compounds. In relation to the different levels of CO2, a response as remarkable as O2 was not observed. The yerba maté that was thickly ground (“cancheada” presented a better storage potential than the one thinly milled (“socada” in the storage with O2 and with CO2. The 1kPa of O2 condition kept the yerba maté greener and with a higher content of chlorophylls and of total phenolic compounds after nine months of storage. The CO2 partial pressure kept the yerba maté coloration greener and with a higher content of chlorophylls and of total phenolic compounds, regardless of the level used, in the maté from both cultivation areas.

  2. The Extracellular Matrix in Photosynthetic Mats: A Cyanobacterial Gingerbread House

    Science.gov (United States)

    Stuart, R.; Stannard, W.; Bebout, B.; Pett-Ridge, J.; Mayali, X.; Weber, P. K.; Lipton, M. S.; Lee, J.; Everroad, R. C.; Thelen, M.

    2014-12-01

    Hypersaline laminated cyanobacterial mats are excellent model systems for investigating photoautotrophic contributions to biogeochemical cycling on a millimeter scale. These self-sustaining ecosystems are characterized by steep physiochemical gradients that fluctuate dramatically on hour timescales, providing a dynamic environment to study microbial response. However, elucidating the distribution of energy from light absorption into biomass requires a complete understanding of the various constituents of the mat. Extracellular polymeric substances (EPS), which can be composed of proteins, polysaccharides, lipids and DNA are a major component of these mats and may function in the redistribution of nutrients and metabolites within the community. To test this notion, we established a model mat-building culture for comparison with the phylogenetically diverse natural mat communities. In these two systems we determined how proteins and glycans in the matrix changed as a function of light and tracked nutrient flow from the matrix. Using mass spectrometry metaproteomics analysis, we found homologous proteins in both field and culture extracellular matrix that point to cyanobacterial turnover of amino acids, inorganic nutrients, carbohydrates and nucleic acids from the EPS. Other abundant functions identified included oxidative stress response from both the cyanobacteria and heterotrophs and cyanobacterial structural proteins that may play a role in mat cohesion. Several degradative enzymes also varied in abundance in the EPS in response to light availability, suggesting active secretion. To further test cyanobacterial EPS turnover, we generated isotopically-labeled EPS and used NanoSIMS to trace uptake of this labeled EPS. Our findings suggest Cyanobacteria may facilitate nutrient transfer to other groups, as well as uptake of their own products through degradation of EPS components. This work provides evidence for the essential roles of EPS for storage, structural

  3. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

    Directory of Open Access Journals (Sweden)

    Young-Mo eKim

    2015-04-01

    Full Text Available Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics for understanding community response to such changing environmental conditions. In this study, we quantified volatile organic acids, polar metabolites (amino acids, glycolytic and citric acid cycle intermediates, nucleobases, nucleosides, and sugars, wax esters, and polyhydroxyalkanoates, resulting in the identification of 104 metabolites and related molecules in thermal chlorophototrophic microbial mat cores collected over a diel cycle in Mushroom Spring, Yellowstone National Park. A limited number of predominant taxa inhabit this community and their functional potentials have been previously identified through metagenomic and metatranscriptomic analyses and in situ metabolisms, and metabolic interactions among these taxa have been hypothesized. Our metabolomics results confirmed the diel cycling of photorespiration (e.g. glycolate and fermentation (e.g. acetate, propionate, and lactate products, the carbon storage polymers polyhydroxyalkanoates, and dissolved gases (e.g. H2 and CO2 in the waters overlying the mat, which were hypothesized to occur in major mat chlorophototrophic community members. In addition, we have formulated the following new hypotheses: 1 the morning hours are a time of biosynthesis of amino acids, DNA, and RNA; 2 photo-inhibited cells may also produce lactate via fermentation as an alternate metabolism; 3 glycolate and lactate are exchanged among Synechococcus and Roseiflexus spp.; and 4 fluctuations in many metabolite pools (e.g. wax esters at different times of day result from species found at different depths within the mat responding to temporal differences in their niches

  4. Flow of light energy in benthic photosynthetic microbial mats

    Energy Technology Data Exchange (ETDEWEB)

    Al-Najjar, Mohammad Ahmad A.

    2010-12-15

    The work in this thesis demonstrates the assessment of the energy budget inside microbial mat ecosystems, and the factors affecting light utilization efficiency. It presents the first balanced light energy budget for benthic microbial mat ecosystems, and shows how the budget and the spatial distribution of the local photosynthetic efficiencies within the euphotic zone depend on the absorbed irradiance (Jabs). The energy budget was dominated by heat dissipation on the expense of photosynthesis. The maximum efficiency of photosynthesis was at light limiting conditions When comparing three different marine benthic photosynthetic ecosystems (originated from Abu-Dhabi, Arctic, and Exmouth Gulf in Western Australia), differences in the efficiencies were calculated. The results demonstrated that the maximum efficiency depended on mat characteristics affecting light absorption and scattering; such as, photopigments ratio and distribution, and the structural organization of the photosynthetic organisms relative to other absorbing components of the ecosystem (i.e., EPS, mineral particles, detritus, etc.). The maximum efficiency decreased with increasing light penetration depth, and increased with increasing the accessory pigments (phycocyanin and fucoxanthin)/chlorophyll ratio. Spatial heterogeneity in photosynthetic efficiency, pigment distribution, as well as light acclimation in microbial mats originating from different geographical locations was investigated. We used a combined pigment imaging approach (variable chlorophyll fluorescence and hyperspectral imaging), and fingerprinting approach. For each mat, the photosynthetic activity was proportional to the local pigment concentration in the photic zone, but not for the deeper layers and between different mats. In each mat, yield of PSII and E1/2 (light acclimation) generally decreased in parallel with depth, but the gradients in both parameters varied greatly between samples. This mismatch between pigments concentration

  5. HiRadMat Low Intensity Beam Commissioning

    CERN Document Server

    Blanco Sancho, J; Cornelis, K; Goddard, B; Hessler, C; Jensen, L; Kain, V; Meddahi, M; Theis, C; Vojtyla, P; Wenninger, J

    2011-01-01

    On Wednesday 22 June 2011, proton beam was sent for the first time through the HiRadMat primary beam line, onto the beam dump located in the HiRadMat experimental cavern. The aims of the beam commissioning were to check the beam line geometry and design validity, the correct functioning of all beam line equipment and to verify the beam parameters. At the first trial, the proton beam reached the end of the primary beam line and the preliminary checks allowed confirming that all beam equipment and parameters are within the specification.

  6. Radon and thoron anomalies along Mat fault in Mizoram, India

    Science.gov (United States)

    Jaishi, Hari Prasad; Singh, Sanjay; Tiwari, Raghavendra Prasad; Tiwari, Ramesh Chandra

    2013-12-01

    In this study, radon and thoron concentrations in soil gas has been monitored using LR-115(II) solid state nuclear track detectors since 15th July 2011 to February 2012. The study was carried out along Mat fault in Serchip district, Mizoram, India at two different sites - Mat Bridge (23°18'N, 92°48'E) and Tuichang (23°13'N, 92°56'E). The results obtained have been correlated to the seismic events that occurred within 800 km from the measuring sites over the mentioned period of time. Anomalous behaviour in radon concentrations have been observed prior to some earthquakes. Interestingly, some thoron anomalies were also recorded.

  7. Chondrichthyans of the San Matías Gulf, Patagonia, Argentina Los condrictios del Golfo San Matías, Patagonia, Argentina

    Directory of Open Access Journals (Sweden)

    María R PERIER

    2011-12-01

    Full Text Available The San Matías Gulf (SMG; 41°- 42° S; 64°- 65° W is the largest gulf in Northern Patagonia, Argentina. Up to date, the chondrichthyan fauna of this area has not been reported. Therefore, the aim of this work is to provide a list with species presence and biological characteristics of the chondrichthyans recorded in SMG during the last 30 years. A total of 13 sharks distributed in 11 families, 19 skates and rays distributed in six families, and one holocephalan have been so far recorded in SMG. From the zoogeographical point of view, this chondrichthyan fauna is a mixed assemblage of species typically found in the Argentinean and Magellanean Provinces. The holocephalan Callorhinchus callorynchus is the most landed chondricthyan of the local fishery. With it, five sharks and seven skates are also exploited.El Golfo San Matías (SMG; 41°- 42° S - 64°-65° O se encuentra ubicado en el norte de la Patagonia, Argentina. Hasta la fecha no se cuentan con reportes de la fauna de condrictios de esta zona. Por lo tanto, el objetivo de este trabajo es proporcionar una lista de la presencia y las características biológicas de los condrictios registrados en el SMG durante los últimos 30 años. Un total de 13 tiburones distribuidos en 11 familias, 19 batoideos distribuidos en seis familias y un holocefalo han sido reportados para la zona. Desde el punto de vista zoogeográfico, el SMG presenta un ensamble de especies pertenecientes a las Provincias Magallánica y Argentina. El holocefalo Callorhinchus callorynchus es el condrictio más desembarcado de la pesquería local. Con menor importancia son explotadas comercialmente, cinco especies de tiburones y siete de rayas.

  8. Bioremediation of hexavalent chromium by a cyanobacterial mat

    Science.gov (United States)

    Shukla, Dhara; Vankar, Padma S.; Srivastava, Sarvesh Kumar

    2012-12-01

    The study comprises the use of cyanobacterial mat (collected from tannery effluent site) to remove hexavalent chromium. This mat was consortium of cyanobacteria/blue-green algae such as Chlorella sp., Phormidium sp. and Oscillatoria sp. The adsorption experiments were carried out in batches using chromium concentrations 2-10, 15-30 and 300 ppm at pH 5.5-6.2. The adsorption started within 15 min; however, 96 % reduction in metal concentration was observed within 210 min. The adsorption phenomenon was confirmed by Fourier transform-infrared spectroscopy and energy dispersive X-ray analysis. This biosorption fitted Freundlich adsorption isotherm very well. It was observed that the best adsorption was at 4 ppm, and at 25 ppm in the chosen concentration ranges. Scanning electron micrograph showed the physiology of mat, indicating sites for metal uptake. The main focus was collection of the cyanobacterial mat from local environments and its chromium removal potential at pH 5.5-6.2.

  9. The Varian MAT-250 mass spectrometer. Steady isotopes laboratory

    International Nuclear Information System (INIS)

    This work treats over the performance and applications of the Varian Mat-250 mass spectrometer which is in the environmental isotope laboratory. It can be applied over topics such as: ions formation, acceleration and collimation, ions separation, ions detection, data transformation, sampling, δ notation. (Author)

  10. Myocardial Cell Pattern on Piezoelectric Nanofiber Mats for Energy Harvesting

    International Nuclear Information System (INIS)

    The paper presents in vitro contractile myocardial cell pattern on piezoelectric nanofiber mats with applications in energy harvesting. The cell-based energy harvester consists of myocardial cell sheet and a PDMS substrate with a PVDF nanofiber mat on. Experimentally, cultured on specifically distributed nanofiber mats, neonatal rat ventricular cardiomyocytes are characterized with the related morphology and contraction. Previously, we have come up with the concept of energy harvesting from heart beating using piezoelectric material. A bio-hybrid energy harvester combined living cardiomyocytes, PDMS polymer substrate and piezoelectric PVDF film with the electrical output of peak current 87.5nA and peak voltage 92.3mV. However, the thickness of the cardiomyocyte cultured on a two-dimensional substrate is much less than that of the piezoelectric film. The Micro Contact Printing (μCP) method used in cell pattern on the PDMS thin film has tough requirement for the film surface. As such, in this paper we fabricated nanofiber-constructed PDMS thin film to realize cell pattern due to PVDF nanofibers with better piezoelectricity and microstructures of nanofiber mats guiding cell distribution. Living cardiomyocytes patterned on those distributed piezoelectric nanofibers with the result of the same distribution as the nanofiber pattern

  11. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat

    NARCIS (Netherlands)

    H. Fan; H. Bolhuis; L.J. Stal

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tida

  12. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats

    OpenAIRE

    Lee, Jackson Z.; Burow, Luke C; Dagmar eWoebken; R Craig Everroad; Kubo, Michael D.; Alfred Michael Spormann; Weber, Peter K.; Jennifer ePett-Ridge; Bebout, Brad M; Hoehler, Tori M.

    2014-01-01

    Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB). However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico -- permanently submerged Microcoleus microbial mats (GN-S), and intertidal Lyngbya microbial mats (GN-I) -- were used in microcosm diel manipulation experiments wi...

  13. Preparation of PVA/ H3PW12O40 Fiber Mats

    Institute of Scientific and Technical Information of China (English)

    Jian GONG; Chang Lu SHAO; Guo Cheng YANG; Yan PAN; Lun Yu QU

    2004-01-01

    Poly(vinyl alcohol) (PVA) fiber mats containing 20 and 80 wt% H3PW12O40 were prepared by using electrospinning technique. The fiber mats were characterized by IR, XRD spectra and scanning electron microscope (SEM). The diameter of the fiber mats is ca. 400 nm.

  14. Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia

    Science.gov (United States)

    Ugalde, Juan A.; Gallardo, Maria J.; Belmar, Camila; Muñoz, Práxedes; Ruiz-Tagle, Nathaly; Ferrada-Fuentes, Sandra; Espinoza, Carola; Allen, Eric E.; Gallardo, Victor A.

    2013-01-01

    The current study describes the taxonomic and functional composition of metagenomic sequences obtained from a filamentous microbial mat isolated from the Comau fjord, located in the northernmost part of the Chilean Patagonia. The taxonomic composition of the microbial community showed a high proportion of members of the Gammaproteobacteria, including a high number of sequences that were recruited to the genomes of Moritella marina MP-1 and Colwelliapsycherythraea 34H, suggesting the presence of populations related to these two psychrophilic bacterial species. Functional analysis of the community indicated a high proportion of genes coding for the transport and metabolism of amino acids, as well as in energy production. Among the energy production functions, we found protein-coding genes for sulfate and nitrate reduction, both processes associated with Gammaproteobacteria-related sequences. This report provides the first examination of the taxonomic composition and genetic diversity associated with these conspicuous microbial mat communities and provides a framework for future microbial studies in the Comau fjord. PMID:24015199

  15. Estudo cinético da remoção de matéria orgânica de águas residuárias da suinocultura em sistemas alagados construídos cultivados com diferentes espécies de vegetais Kinetic study of organic matter removal from swine wastewaters treated in constructed wetlands cultivated with different species of plants

    Directory of Open Access Journals (Sweden)

    Antonio T. de Matos

    2011-12-01

    Full Text Available Com a realização deste estudo, teve-se o objetivo de obter valores dos coeficientes de remoção da matéria orgânica de águas residuárias da suinocultura (ARS, quando em tratamento em sistemas alagados, construídos (SACs e cultivados com diferentes espécies vegetais e em condições climáticas tropicais. Em tanques de 24,0 x 1,1 x 0,7 m, impermeabilizados com lona de PVC e preenchidos com uma camada de 0,4 m de brita zero (altura útil, foram plantados taboa (SAC1, tripa-de-sapo (SAC2 e capim-tifton 85 (SAC3. No SAC4 (multivegetado, foi plantado, no primeiro terço, tripa-de-sapo; no segundo terço, taboa, e no último terço, capim-tifton 85. A ARS foi previamente tratada em filtros orgânicos constituídos por bagaço de cana-de-açúcar, sendo aplicada numa vazão de 0,8 m³ d-1, o que correspondeu a um tempo de retenção hidráulica (TRH aproximado de 6,4 dias. Coletaram-se amostras da água residuária nos pontos 0 (entrada, 4; 8; 12; 16; 20 e 24 m (saída de cada SAC. Nas amostras coletadas, foram analisadas as concentrações de DQO, sendo os valores utilizados para a obtenção dos parâmetros cinéticos aparentes. Não houve diferença (p>0,05 entre os SACs, na capacidade do sistema em remover DQO; entretanto, a época do ano teve influência na dinâmica da remoção de matéria orgânica nos sistemas. Os valores do coeficiente cinético aparente k v' ficaram entre 0,94 e 1,52 d-1 no cultivo, no período de verão. Já no período de outono/inverno, o coeficiente k v' apresentou valores menores, entre 0,88 e 1,07 d-1.The objective of this study was obtain the coefficients of organic matter removal in constructed wetlands (CWs cultivated with different plant species, in tropical climatic conditions, when used in swine wastewater treatment. In tanks of 24.0 m x 1.1 m x 0.7 m, sealed with PVC canvas, filled with a layer (0.4 m of depth of fine gravel were planted cattail (CW1, alligator weed (CW2 and tifton 85 bermudagrass (CW3

  16. Radon and thoron anomalies along Mat fault in Mizoram, India

    Indian Academy of Sciences (India)

    Hari Prasad Jaishi; Sanjay Singh; Raghavendra Prasad Tiwari; Ramesh Chandra Tiwari

    2013-12-01

    In this study, radon and thoron concentrations in soil gas has been monitored using LR-115(II) solid state nuclear track detectors since 15th July 2011 to February 2012. The study was carried out along Mat fault in Serchip district, Mizoram, India at two different sites – Mat Bridge (23°18′N, 92° 48′E) and Tuichang (23° 13′N, 92° 56′E). The results obtained have been correlated to the seismic events that occurred within 800km from the measuring sites over the mentioned period of time. Anomalous behaviour in radon concentrations have been observed prior to some earthquakes. Interestingly, some thoron anomalies were also recorded.

  17. Social yoga mats: reinforcing synergy between physical and social activity

    DEFF Research Database (Denmark)

    Nagargoje, Arun; Sokoler, Tomas; Maybach, Karl

    2011-01-01

    This paper discusses our early research into the design space for digital technologies that extend the existing synergistic relationship between physical and social activity from fitness centers to the home. We focus on yoga activity for senior citizens and explore the concept of social yoga mats......, which spread awareness of individuals' exercise activities within a peer group. We describe the concept, hardware sketches, exploratory co-design process and discuss our findings and early reflections into this design space.......This paper discusses our early research into the design space for digital technologies that extend the existing synergistic relationship between physical and social activity from fitness centers to the home. We focus on yoga activity for senior citizens and explore the concept of social yoga mats...

  18. Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat

    Science.gov (United States)

    Canfield, Donald E.; Des Marais, David J.

    1993-01-01

    Complete budgets for carbon and oxygen have been constructed for cyanobacterial mats dominated by Microcoleus chthonoplastes from the evaporating ponds of a salt works. We infer from the data the various sinks for O2 as well as the sources of carbon for primary production. Although seasonal variability exists, a major percentage of the O2 produced during the day did not diffuse out of the mat but was used within the mat to oxidize both organic carbon and the sulfide produced by sulfate reduction. At night, most of the O2 that diffused into the mat was used to oxidize sulfide, with O2 respiration of minor importance. During the day, the internal mat processes of sulfate reduction and O2 respiration generated as much or more inorganic carbon (DIC) for primary production as diffusion into the mat. Oxygenic photosynthesis was the most important process of carbon fixation. At night, the DIC lost from the mat was mostly from sulfate reduction. Elemental fluxes across the mat/brine interface indicated that carbon with an oxidation state of greater than zero was taken up by the mat during the day and liberated from the mat at night. Overall, carbon with an average oxidation state of near zero accumulated in the mat. Both carbon fixation and carbon oxidation rates varied with temperature by a similar amount.

  19. Nutrient treatments alter microbial mat colonization in two glacial meltwater streams from the McMurdo Dry Valleys, Antarctica.

    Science.gov (United States)

    Kohler, Tyler J; Van Horn, David J; Darling, Joshua P; Takacs-Vesbach, Cristina D; McKnight, Diane M

    2016-04-01

    Microbial mats are abundant in many alpine and polar aquatic ecosystems. With warmer temperatures, new hydrologic pathways are developing in these regions and increasing dissolved nutrient fluxes. In the McMurdo Dry Valleys, thermokarsting may release both nutrients and sediment, and has the potential to influence mats in glacial meltwater streams. To test the role of nutrient inputs on community structure, we created nutrient diffusing substrata (NDS) with agar enriched in N, P and N + P, with controls, and deployed them into two Dry Valley streams. We found N amendments (N and N + P) to have greater chlorophyll-a concentrations, total algal biovolume, more fine filamentous cyanobacteria and a higher proportion of live diatoms than other treatments. Furthermore, N treatments were substantially elevated in Bacteroidetes and the small diatom, Fistulifera pelliculosa. On the other hand, species richness was almost double in P and N + P treatments over others, and coccoid green algae and Proteobacteria were more abundant in both streams. Collectively, these data suggest that nutrients have the potential to stimulate growth and alter community structure in glacial meltwater stream microbial mats, and the recent erosion of permafrost and accelerated glacial melt will likely impact resident biota in polar lotic systems here and elsewhere. PMID:26940086

  20. Genetic relatedness of genus Oryza from Eastern Himalayan region as revealed by chloroplast matK gene

    Directory of Open Access Journals (Sweden)

    Doris Zodinpuii

    2013-12-01

    Full Text Available Phylogenetic relationship was studied in wild and cultivated rice using the chloroplast matK gene. The aligned sequence fragments were 826bp in length with 7.02% variable and 4.47% phylogenetically informative sites and the estimated Transition/Transversion bias (R was 1.97. Seven hundred and two characters were constant, 74 variable characters were parsimony-uninformative and 50 were parsimony–informative. Haplotypes of Mizoram rice and wild relatives (A genome were more similar than those of distantly related species (B, C/CD, E and G genomes. It further revealed that the EE genome species is most closely related to the CC genome and CCDD genomes. The BBCC genome species had different origins, and their maternal parents had either the BB or CC genome. An additional genome type, HHKK was recognized in O. coarctata and O. schlechteri. Within the AA genome the African, O. glaberrima and O. longistaminatea and American, O. glumipatula and O. barthii were closer to the Indian Oryza species, O. nivara and O. rufipogon. The unknown genome O. malampuzhaensis from India is closer to BB and BBCC genome containing respectively O. punctata from Cameroon and O. minuta from Philippines. CpG rich matK sequences were rich in GG and FF genotypes, whereas CpA rich sequences belonged to BB and BBCC related genomes variety.

  1. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat

    OpenAIRE

    Fan, Haoxin; Bolhuis, Henk; Stal, Lucas J.

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is presen...

  2. NITRIFICATION AND NITRIFYING BACTERIA IN A COASTAL MICROBIAL MAT

    OpenAIRE

    Haoxin eFan; Henk eBolhuis; Lucas eStal

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is presen...

  3. Mineralogy of iron microbial mats from loihi seamount.

    Science.gov (United States)

    Toner, Brandy M; Berquó, Thelma S; Michel, F Marc; Sorensen, Jeffry V; Templeton, Alexis S; Edwards, Katrina J

    2012-01-01

    Extensive mats of Fe oxyhydroxides and associated Fe-oxidizing microbial organisms form in diverse geochemical settings - freshwater seeps to deep-sea vents - where ever opposing Fe(II)-oxygen gradients prevail. The mineralogy, reactivity, and structural transformations of Fe oxyhydroxides precipitated from submarine hydrothermal fluids within microbial mats remains elusive in active and fossil systems. In response, a study of Fe microbial mat formation at the Loihi Seamount was conducted to describe the physical and chemical characteristics of Fe-phases using extended X-ray absorption fine structure spectroscopy, powder X-ray diffraction, synchrotron radiation X-ray total scattering, low-temperature magnetic measurements, and Mössbauer spectroscopy. Particle sizes of 3.5-4.6 nm were estimated from magnetism data, and coherent scattering domain (CSD) sizes as small as 1.6 nm are indicated by pair distribution function (PDF) analysis. Disorder in the nanostructured Fe-bearing phases results in limited intermediate-range structural order: less than that of standard two-line ferrihydrite (Fh), except for the Pohaku site. The short-range ordered natural Fh (Fh(SRO)) phases were stable at 4°C in the presence of oxygen for at least 1 year and during 400°C treatment. The observed stability of the Fh(SRO) is consistent with magnetic observations that point to non-interacting nanoparticles. PDF analyses of total scattering data provide further evidence for Fh(SRO) particles with a poorly ordered silica coating. The presence of coated particles explains the small CSD for the mat minerals, as well as the stability of the minerals over time and against heating. The mineral properties observed here provide a starting point from which progressively older and more extensively altered Fe deposits may be examined, with the ultimate goal of improved interpretation of past biogeochemical conditions and diagenetic processes. PMID:22485113

  4. Mineralogy of iron microbial mats from Loihi Seamount

    Directory of Open Access Journals (Sweden)

    Brandy Marie Toner

    2012-04-01

    Full Text Available Extensive mats of Fe oxyhydroxides and associated Fe-oxidizing microbial organisms form in diverse geochemical settings – freshwater seeps to deep-sea vents – where ever opposing Fe(II-oxygen gradients prevail. The mineralogy, reactivity, and structural transformations of Fe oxyhydroxides precipitated from submarine hydrothermal fluids within microbial mats remains elusive in active and fossil systems. In response, a study of Fe microbial mat formation at the Loihi Seamount was conducted to describe the physical and chemical characteristics of Fe-phases using extended X-ray absorption fine structure spectroscopy, powder X-ray diffraction, synchrotron radiation X-ray total scattering, low-temperature magnetic measurements, and Mössbauer spectroscopy. Particle sizes of 3.5-4.6 nm were estimated from magnetism data, and coherent scattering domain sizes as small as 1.6 nm are indicated by pair distribution function (PDF analysis. Disorder in the nanostructured Fe-bearing phases results in limited intermediate-range structural order: less than that of standard 2-line ferrihydrite (Fh, except for the Pohaku site. The short-range ordered natural Fh (FhSRO phases were stable at 4 °C in the presence of oxygen for at least 1 year and during 400 oC treatment. The observed stability of the FhSRO is consistent with magnetic observations that point to non-interacting nanoparticles. PDF analyses of total scattering data provide further evidence for FhSRO particles with a poorly ordered silica coating. The presence of coated particles explains the small coherent scattering domain for the mat minerals, as well as the stability of the minerals over time and against heating. The mineral properties observed here provide a starting point from which progressively older and more extensively altered iron deposits may be examined, with the ultimate goal of improved interpretation of past biogeochemical conditions and diagenetic processes.

  5. Drying Spirulina with Foam Mat Drying at Medium Temperature

    OpenAIRE

    Aji Prasetyaningrum; Mohamad Djaeni

    2012-01-01

    Spirulina is a single cell blue green microalgae (Cyanobacteria) containing many Phytonutrients (Beta-carotene, Chlorophyl, Xanthophyl, Phyocianin) using as anti-carcinogen in food. Producing dry spirulina by quick drying process at medium temperature is very important to retain the Phytonutrient quality. Currently, the work is still challenging due to the gel formation that block the water diffusion from inside to the surface.  This research studies the performance of foam-mat drying on prod...

  6. Response of cyanobacterial mats to nutrient and salinity changes

    Czech Academy of Sciences Publication Activity Database

    Rejmánková, E.; Komárková, Jaroslava

    2005-01-01

    Roč. 83, č. 2 (2005), s. 87-107. ISSN 0304-3770. [INTECOL International Wetlands Conference /7./. Utrecht, 25.07.2004-30.7.2004] Grant ostatní: NSF(US) 0089211 Institutional research plan: CEZ:AV0Z60170517 Keywords : cyanobacterial mats * Belize * P-N impact Subject RIV: EH - Ecology, Behaviour Impact factor: 1.344, year: 2005

  7. Simulated Carbon Cycling in a Model Microbial Mat.

    Science.gov (United States)

    Decker, K. L.; Potter, C. S.

    2006-12-01

    We present here the novel addition of detailed organic carbon cycling to our model of a hypersaline microbial mat ecosystem. This ecosystem model, MBGC (Microbial BioGeoChemistry), simulates carbon fixation through oxygenic and anoxygenic photosynthesis, and the release of C and electrons for microbial heterotrophs via cyanobacterial exudates and also via a pool of dead cells. Previously in MBGC, the organic portion of the carbon cycle was simplified into a black-box rate of accumulation of simple and complex organic compounds based on photosynthesis and mortality rates. We will discuss the novel inclusion of fermentation as a source of carbon and electrons for use in methanogenesis and sulfate reduction, and the influence of photorespiration on labile carbon exudation rates in cyanobacteria. We will also discuss the modeling of decomposition of dead cells and the ultimate release of inorganic carbon. The detailed modeling of organic carbon cycling is important to the accurate representation of inorganic carbon flux through the mat, as well as to accurate representation of growth models of the heterotrophs under different environmental conditions. Because the model ecosystem is an analog of ancient microbial mats that had huge impacts on the atmosphere of early earth, this MBGC can be useful as a biological component to either early earth models or models of other planets that potentially harbor life.

  8. Hydroponic root mats for wastewater treatment-a review.

    Science.gov (United States)

    Chen, Zhongbing; Cuervo, Diego Paredes; Müller, Jochen A; Wiessner, Arndt; Köser, Heinz; Vymazal, Jan; Kästner, Matthias; Kuschk, Peter

    2016-08-01

    Hydroponic root mats (HRMs) are ecotechnological wastewater treatment systems where aquatic vegetation forms buoyant filters by their dense interwoven roots and rhizomes, sometimes supported by rafts or other floating materials. A preferential hydraulic flow is created in the water zone between the plant root mat and the bottom of the treatment system. When the mat touches the bottom of the water body, such systems can also function as HRM filter; i.e. the hydraulic flow passes directly through the root zone. HRMs have been used for the treatment of various types of polluted water, including domestic wastewater; agricultural effluents; and polluted river, lake, stormwater and groundwater and even acid mine drainage. This article provides an overview on the concept of applying floating HRM and non-floating HRM filters for wastewater treatment. Exemplary performance data are presented, and the advantages and disadvantages of this technology are discussed in comparison to those of ponds, free-floating plant and soil-based constructed wetlands. Finally, suggestions are provided on the preferred scope of application of HRMs. PMID:27164889

  9. Studying Microbial Mat Functioning Amidst "Unexpected Diversity": Methodological Approaches and Initial Results from Metatranscriptomes of Mats Over Diel cycles, iTags from Long Term Manipulations, and Biogeochemical Cycling in Simplified Microbial Mats Constructed from Cultures

    Science.gov (United States)

    Bebout, B.; Bebout, L. E.; Detweiler, A. M.; Everroad, R. C.; Lee, J.; Pett-Ridge, J.; Weber, P. K.

    2014-12-01

    Microbial mats are famously amongst the most diverse microbial ecosystems on Earth, inhabiting some of the most inclement environments known, including hypersaline, dry, hot, cold, nutrient poor, and high UV environments. The high microbial diversity of microbial mats makes studies of microbial ecology notably difficult. To address this challenge, we have been using a combination of metagenomics, metatranscriptomics, iTags and culture-based simplified microbial mats to study biogeochemical cycling (H2 production, N2 fixation, and fermentation) in microbial mats collected from Elkhorn Slough, Monterey Bay, California. Metatranscriptomes of microbial mats incubated over a diel cycle have revealed that a number of gene systems activate only during the day in Cyanobacteria, while the remaining appear to be constitutive. The dominant cyanobacterium in the mat (Microcoleus chthonoplastes) expresses several pathways for nitrogen scavenging undocumented in cultured strains, as well as the expression of two starch storage and utilization cycles. Community composition shifts in response to long term manipulations of mats were assessed using iTags. Changes in community diversity were observed as hydrogen fluxes increased in response to a lowering of sulfate concentrations. To produce simplified microbial mats, we have isolated members of 13 of the 15 top taxa from our iTag libraries into culture. Simplified microbial mats and simple co-cultures and consortia constructed from these isolates reproduce many of the natural patterns of biogeochemical cycling in the parent natural microbial mats, but against a background of far lower overall diversity, simplifying studies of changes in gene expression (over the short term), interactions between community members, and community composition changes (over the longer term), in response to environmental forcing.

  10. Versatility of electrospinning in the fabrication of fibrous mat and mesh nanostructures of bismuth ferrite (BiFeO3) and their magnetic and photocatalytic activities.

    Science.gov (United States)

    Bharathkumar, S; Sakar, M; K, Rohith Vinod; Balakumar, S

    2015-07-21

    This study demonstrates the fabrication of electrospun bismuth ferrite (BiFeO3/BFO) fiber mat and fibrous mesh nanostructures consisting of aligned and random fibers respectively. The formation of these one dimensional (1D) nanostructures was mediated by the drum and plate collectors in the electrospinning process that yielded aligned and random nanofibers of BFO respectively. The single phase and rhombohedral crystal structure of the fabricated 1D BFO nanostructures are confirmed through X-ray diffraction (XRD) studies. X-ray photoelectron spectroscopy (XPS) studies indicated that the fabricated fibers are stoichiometric BFO with native oxidation states +3. The surface texture and morphology are analyzed using the field emission scanning electron microscopy (FESEM) and high resolution transmission electron microscopy (HRTEM) techniques. The average size of fibers in mat and mesh nanostructures is found to be 200 nm and 150 nm respectively. The band gap energy of BFO mat and mesh deduced from their UV diffuse reflectance spectra (UV-DRS) was found to be 2.44 eV and 2.39 eV, respectively, which evidenced the improved visible light receptivity of BFO mesh compared to that of the mat. Magnetization studies using a super conducting quantum interference device (SQUID) magnetometer revealed the weak ferromagnetic properties of BFO mesh and mat nanostructures that could emerge due to the dimension induced suppression of cycloidal spin structures. The photocatalytic degradation properties of the fibrous mesh are found to be enhanced compared to that of the mat. This could be attributed to the reduced band gap energy and an improved semiconductor band-bending phenomenon in the mesh that favoured the transportation of excited charge carriers to the photocatalyst-dye interfaces and the production of more number of reactive species that lead to the effective degradation of the dye molecules. PMID:26083677

  11. Rigid Polyurethane Foam Thermal Insulation Protected with Mineral Intumescent Mat

    Directory of Open Access Journals (Sweden)

    Kirpluks Mikelis

    2014-12-01

    Full Text Available One of the biggest disadvantages of rigid polyurethane (PU foams is its low thermal resistance, high flammability and high smoke production. Greatest advantage of this thermal insulation material is its low thermal conductivity (λ, which at 18-28 mW/(m•K is superior to other materials. To lower the flammability of PU foams, different flame retardants (FR are used. Usually, industrially viable are halogenated liquid FRs but recent trends in EU regulations show that they are not desirable any more. Main concern is toxicity of smoke and health hazard form volatiles in PU foam materials. Development of intumescent passive fire protection for foam materials would answer problems with flammability without using halogenated FRs. It is possible to add expandable graphite (EG into PU foam structure but this increases the thermal conductivity greatly. Thus, the main advantage of PU foam is lost. To decrease the flammability of PU foams, three different contents 3%; 9% and 15% of EG were added to PU foam formulation. Sample with 15% of EG increased λ of PU foam from 24.0 to 30.0 mW/(m•K. This paper describes the study where PU foam developed from renewable resources is protected with thermally expandable intumescent mat from Technical Fibre Products Ltd. (TFP as an alternative to EG added into PU material. TFP produces range of mineral fibre mats with EG that produce passive fire barrier. Two type mats were used to develop sandwich-type PU foams. Also, synergy effect of non-halogenated FR, dimethyl propyl phosphate and EG was studied. Flammability of developed materials was assessed using Cone Calorimeter equipment. Density, thermal conductivity, compression strength and modulus of elasticity were tested for developed PU foams. PU foam morphology was assessed from scanning electron microscopy images.

  12. Diel Metagenomics and Metatranscriptomics of Elkhorn Slough Hypersaline Microbial Mat

    Science.gov (United States)

    Lee, J.; Detweiler, A. M.; Everroad, R. C.; Bebout, L. E.; Weber, P. K.; Pett-Ridge, J.; Bebout, B.

    2014-12-01

    To understand the variation in gene expression associated with the daytime oxygenic phototrophic and nighttime fermentation regimes seen in hypersaline microbial mats, a contiguous mat piece was subjected to sampling at regular intervals over a 24-hour diel period. Additionally, to understand the impact of sulfate reduction on biohydrogen consumption, molybdate was added to a parallel experiment in the same run. 4 metagenome and 12 metatranscriptome Illumina HiSeq lanes were completed over day / night, and control / molybdate experiments. Preliminary comparative examination of noon and midnight metatranscriptomic samples mapped using bowtie2 to reference genomes has revealed several notable results about the dominant mat-building cyanobacterium Microcoleus chthonoplastes PCC 7420. Dominant cyanobacterium M. chthonoplastes PCC 7420 shows expression in several pathways for nitrogen scavenging, including nitrogen fixation. Reads mapped to M. chthonoplastes PCC 7420 shows expression of two starch storage and utilization pathways, one as a starch-trehalose-maltose-glucose pathway, another through UDP-glucose-cellulose-β-1,4 glucan-glucose pathway. The overall trend of gene expression was primarily light driven up-regulation followed by down-regulation in dark, while much of the remaining expression profile appears to be constitutive. Co-assembly of quality-controlled reads from 4 metagenomes was performed using Ray Meta with progressively smaller K-mer sizes, with bins identified and filtered using principal component analysis of coverages from all libraries and a %GC filter, followed by reassembly of the remaining co-assembly reads and binned reads. Despite having relatively similar abundance profiles in each metagenome, this binning approach was able to distinctly resolve bins from dominant taxa, but also sulfate reducing bacteria that are desired for understanding molybdate inhibition. Bins generated from this iterative assembly process will be used for downstream

  13. Electrospun magnetic nanofibre mats – A new bondable biomaterial using remotely activated magnetic heating

    Energy Technology Data Exchange (ETDEWEB)

    Zhong, Yi [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Key Laboratory of Science & Technology of Eco-Textile, Ministry of Education, College of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai (China); Leung, Victor; Yuqin Wan, Lynn [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Dutz, Silvio [Institut für Biomedizinische Technik und Informatik, Technische Universität Ilmenau (Germany); Department of Nano Biophotonics, Leibniz Institute of Photonic Technology, Jena (Germany); Ko, Frank K., E-mail: frank.ko@ubc.ca [Department of Materials Engineering, University of British Columbia, Vancouver (Canada); Häfeli, Urs O., E-mail: urs.hafeli@ubc.ca [Faculty of Pharmaceutical Sciences, University of British Columbia, Vancouver (Canada)

    2015-04-15

    A solvothermal process was adopted to produce hydrophilic magnetite (Fe{sub 3}O{sub 4}) nanoparticles which were subsequently emulsified with a chloroform/methanol (70/30 v/v) solution of poly(caprolactone) (PCL) and then electrospun into a 0.2 mm thick PCL mat. The magnetic heating of the mats at a field amplitude of 25 kA/m and frequency of 400 kHz exhibited promising efficiency for magnetic hyperthermia, with a specific absorption rate of about 40 W/g for the magnetic mat. The produced heat was used to melt the magnetic mat onto the surrounding non-magnetic polymer mat from within, without destroying the nanostructure of the non-magnetic polymer more than 0.5 mm away. Magnetic nanofibre mats might thus be useful for internal heat sealing applications, and potentially also for thermotherapy.

  14. Electrospun magnetic nanofibre mats - A new bondable biomaterial using remotely activated magnetic heating

    Science.gov (United States)

    Zhong, Yi; Leung, Victor; Yuqin Wan, Lynn; Dutz, Silvio; Ko, Frank K.; Häfeli, Urs O.

    2015-04-01

    A solvothermal process was adopted to produce hydrophilic magnetite (Fe3O4) nanoparticles which were subsequently emulsified with a chloroform/methanol (70/30 v/v) solution of poly(caprolactone) (PCL) and then electrospun into a 0.2 mm thick PCL mat. The magnetic heating of the mats at a field amplitude of 25 kA/m and frequency of 400 kHz exhibited promising efficiency for magnetic hyperthermia, with a specific absorption rate of about 40 W/g for the magnetic mat. The produced heat was used to melt the magnetic mat onto the surrounding non-magnetic polymer mat from within, without destroying the nanostructure of the non-magnetic polymer more than 0.5 mm away. Magnetic nanofibre mats might thus be useful for internal heat sealing applications, and potentially also for thermotherapy.

  15. Electrospun magnetic nanofibre mats – A new bondable biomaterial using remotely activated magnetic heating

    International Nuclear Information System (INIS)

    A solvothermal process was adopted to produce hydrophilic magnetite (Fe3O4) nanoparticles which were subsequently emulsified with a chloroform/methanol (70/30 v/v) solution of poly(caprolactone) (PCL) and then electrospun into a 0.2 mm thick PCL mat. The magnetic heating of the mats at a field amplitude of 25 kA/m and frequency of 400 kHz exhibited promising efficiency for magnetic hyperthermia, with a specific absorption rate of about 40 W/g for the magnetic mat. The produced heat was used to melt the magnetic mat onto the surrounding non-magnetic polymer mat from within, without destroying the nanostructure of the non-magnetic polymer more than 0.5 mm away. Magnetic nanofibre mats might thus be useful for internal heat sealing applications, and potentially also for thermotherapy

  16. Solution-blown nanofiber mats from fish sarcoplasmic protein

    DEFF Research Database (Denmark)

    Sett, S.; Boutrup Stephansen, Karen; Yarin, A.L.

    2016-01-01

    In the present work, solution-blowing was adopted to form nanofibers from fish sarcoplasmic proteins (FSPs). Nanofiber mats containing different weight ratios (up to 90/10) of FSP in the FSP/nylon 6 blended nanofibers were formed from formic acid solutions, and compared to electrospun fibers made...... production rate of solution-blowing was increased 30-fold in relation to electrospinning. Overall, this study reveals FSP as an interesting biopolymeric alternative to synthetic polymers, and the introduction of FSP to nylon 6 provides a composite with controlled properties....

  17. Out-of-plane auxeticity in sintered fibre network mats

    International Nuclear Information System (INIS)

    Fibre network mats composed of stainless steel exhibit an unusually large out-of-plane auxeticity (i.e. high negative Poisson’s ratio ν) when subjected to in-plane tensile loading. In situ observations in a scanning electron microscope suggest that this is attributable to fibre segment straightening. An investigation was carried out on the effects of fibre volume fraction and network thickness on the auxetic response. Weak inter-layer bonding, high fibre content and low network thickness were found to amplify the auxetic effect

  18. Superhydrophobic silicone fiber mats fabricated by electrospinning from solution

    Science.gov (United States)

    Ludwig, Bonnie; Clark, Aneta; Snow, Steven; Hill, Randal; Schmidt, Randall; Fogg, Brad; Lo, Peter

    2007-03-01

    Fine silicone fibers of 1 -- 20 μm diameter were fabricated from solution via electrospinning. These are the first examples of fine fibers prepared from silicone homopolymers. Fiber morphology (beaded, ribbon-like, smooth) and diameter were controlled. The nanoscale surface roughness of nonwoven fiber mats created with silicone fibers produced a superhydrophobic surface that had a water contact angle of ˜160^o. The superhydrophobic surface was made reversibly hydrophilic with exposure to oxygen plasma. The combination of high surface area and superhydrophobicity suggests potential applications in the areas of water-repellent textiles, filtration, adsorption and chemical separations, wound dressings, and fuel cells.

  19. Risk Factors Analysis Associated with Seropositivity to Toxoplasma gondii in Sheep and Goats in Southeastern Iran Using Modified Agglutination Test (MAT)

    OpenAIRE

    N Zia-Ali; H Kamyabi; M Fasihi Harandi; M Beigzadeh; M Bahrieni

    2008-01-01

    Background: Toxoplasma gondii infection is widely prevalent in many species of warm-blooded animals including human. The aim of this study was to determine the prevalence of antibodies to T. gondii from slaughtered sleep and goats by mod­ified agglutination test (MAT) in Kerman region, southeastern Iran. Methods: Altogether 1340 blood samples were collected from 562 sheep and 778 goats from April to September 2005 in Kerman slaughterhouse. The sera were examined for T. gondii antibodies by MA...

  20. Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

    OpenAIRE

    Hon Lun Wong; Daniela-Lee Smith; Pieter T. Visscher; Burns, Brendan P.

    2015-01-01

    Modern microbial mats can provide key insights into early Earth ecosystems, and Shark Bay, Australia, holds one of the best examples of these systems. Identifying the spatial distribution of microorganisms with mat depth facilitates a greater understanding of specific niches and potentially novel microbial interactions. High throughput sequencing coupled with elemental analyses and biogeochemical measurements of two distinct mat types (smooth and pustular) at a millimeter scale were undertake...

  1. MILLIMETER-SCALE GENETIC GRADIENTS AND COMMUNITY-LEVEL MOLECULAR CONVERGENCE IN A HYPERSALINE MICROBIAL MAT

    Energy Technology Data Exchange (ETDEWEB)

    Fenner, Marsha W; Kunin, Victor; Raes, Jeroen; Harris, J. Kirk; Spear, John R.; Walker, Jeffrey J.; Ivanova, Natalia; Mering, Christian von; Bebout, Brad M.; Pace, Norman R.; Bork, Peer; Hugenholtz, Philip

    2008-04-30

    To investigate the extent of genetic stratification in structured microbial communities, we compared the metagenomes of 10 successive layers of a phylogenetically complex hypersaline mat from Guerrero Negro, Mexico. We found pronounced millimeter-scale genetic gradients that are consistent with the physicochemical profile of the mat. Despite these gradients, all layers displayed near identical and acid-shifted isoelectric point profiles due to a molecular convergence of amino acid usage indicating that hypersalinity enforces an overriding selective pressure on the mat community.

  2. Sulfate-reducing bacteria and their activities in cyanobacterial mats of Solar Lake (Sinai, Egypt)

    DEFF Research Database (Denmark)

    Teske, A.; Ramsing, NB; Habicht, K.;

    1998-01-01

    aggregate formation were the most conspicuous adaptations of Solar Lake sulfate-reducing bacteria to the mat matrix and to diurnal oxygen stress. A comparison of sulfate reduction rates within the mat and previously published photosynthesis rates showed that CO2 from sulfate reduction in the upper 5 mm...... accounted for 7 to 8% of the total photosynthetic CO2 demand of the mat.......The sulfate-reducing bacteria within the surface layer of the hypersaline cyanobacterial mat of Solar Lake (Sinai, Egypt) were investigated with combined microbiological, molecular, and biogeochemical approaches. The diurnally oxic surface layer contained between 10(6) and 10(7) cultivable sulfate...

  3. Polycaprolactone-Chitin Nanofibrous Mats as Potential Scaffolds for Tissue Engineering

    OpenAIRE

    Min Sup Kim; Sang Jun Park; Bon Kang Gu; Chun-Ho Kim

    2012-01-01

    We describe here the preparation of poly(caprolactone) (PCL)-chitin nanofibrous mats by electrospinning from a blended solution of PCL and chitin dissolved in a cosolvent, 1,1,1,3,3,3-hexafluoro-2-propanol and trifluoroacetic acid. Scanning electron microscopy showed that the neutralized PCL-chitin nanofibrous mats were morphologically stable, with a mean diameter of 340.5±2.6 nm, compared with a diameter of 524.2±12.1 nm for PCL mats. The nanofibrous mats showed decreased water contact angle...

  4. Aligned Electrospun Polyvinyl Pyrrolidone/Poly ɛ-Caprolactone Blend Nanofiber Mats for Tissue Engineering

    Science.gov (United States)

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Opanasopit, Praneet

    2016-02-01

    Electrospun nanofibrous materials are widely used in medical applications such as tissue engineering scaffolds, wound dressing material and drug delivery carriers. For tissue engineering scaffolds, the structure of the nanofiber is similar to extracellular matrix (ECM) which promotes the cell growth and proliferation. In the present study, the aligned nanofiber mats of polyvinyl pyrrolidone (PVP) blended poly ɛ-caprolactone (PCL) was successfully generated using electrospinning technique. The morphology of PVP/PCL nanofiber mats were characterized by scanning electron microspore (SEM). The chemical and crystalline structure of PVP/PCL nanofiber mats were analyzed using Fourier transform infrared spectroscopy (FTIR) and powder X-ray diffactometer (PXRD). The water contact angle of mats was investigated. Cell culture studies using normal human fibroblasts (NHF) were performed to assess cell morphology, cell alignment and cell proliferation. The results indicated that the fiber were in nanometer range. The PVP/PCL was well dispersed in nanofiber mats and was in amorphous form. The water contact angle of PVP/PCL nanofiber mats was lower than PCL nanofiber mats. The PVP/PCL nanofiber mats exhibited good biocompatibility with NHF cells. In summary, the PVP/PCL nanofiber mats had potential to be used in tissue engineering and regenerative medicine.

  5. Coastal microbial mat diversity along a natural salinity gradient.

    Directory of Open Access Journals (Sweden)

    Henk Bolhuis

    Full Text Available The North Sea coast of the Dutch barrier island of Schiermonnikoog is covered by microbial mats that initiate a succession of plant communities that eventually results in the development of a densely vegetated salt marsh. The North Sea beach has a natural elevation running from the low water mark to the dunes resulting in gradients of environmental factors perpendicular to the beach. These gradients are due to the input of seawater at the low water mark and of freshwater from upwelling groundwater at the dunes and rainfall. The result is a natural and dynamic salinity gradient depending on the tide, rainfall and wind. We studied the microbial community composition in thirty three samples taken every ten meters along this natural salinity gradient by using denaturing gradient gel electrophoresis (DGGE of rRNA gene fragments. We looked at representatives from each Domain of life (Bacteria, Archaea and Eukarya and with a particular emphasis on Cyanobacteria. Analysis of the DGGE fingerprints together with pigment composition revealed three distinct microbial mat communities, a marine community dominated by diatoms as primary producers, an intermediate brackish community dominated by Cyanobacteria as primary producers and a freshwater community with Cyanobacteria and freshwater green algae.

  6. Metagenomic and metabolic profiling of nonlithifying and lithifying stromatolitic mats of Highborne Cay, The Bahamas.

    Directory of Open Access Journals (Sweden)

    Christina L M Khodadad

    Full Text Available BACKGROUND: Stromatolites are laminated carbonate build-ups formed by the metabolic activity of microbial mats and represent one of the oldest known ecosystems on Earth. In this study, we examined a living stromatolite located within the Exuma Sound, The Bahamas and profiled the metagenome and metabolic potential underlying these complex microbial communities. METHODOLOGY/PRINCIPAL FINDINGS: The metagenomes of the two dominant stromatolitic mat types, a nonlithifying (Type 1 and lithifying (Type 3 microbial mat, were partially sequenced and compared. This deep-sequencing approach was complemented by profiling the substrate utilization patterns of the mats using metabolic microarrays. Taxonomic assessment of the protein-encoding genes confirmed previous SSU rRNA analyses that bacteria dominate the metagenome of both mat types. Eukaryotes comprised less than 13% of the metagenomes and were rich in sequences associated with nematodes and heterotrophic protists. Comparative genomic analyses of the functional genes revealed extensive similarities in most of the subsystems between the nonlithifying and lithifying mat types. The one exception was an increase in the relative abundance of certain genes associated with carbohydrate metabolism in the lithifying Type 3 mats. Specifically, genes associated with the degradation of carbohydrates commonly found in exopolymeric substances, such as hexoses, deoxy- and acidic sugars were found. The genetic differences in carbohydrate metabolisms between the two mat types were confirmed using metabolic microarrays. Lithifying mats had a significant increase in diversity and utilization of carbon, nitrogen, phosphorus and sulfur substrates. CONCLUSION/SIGNIFICANCE: The two stromatolitic mat types retained similar microbial communities, functional diversity and many genetic components within their metagenomes. However, there were major differences detected in the activity and genetic pathways of organic carbon

  7. The plant mitochondrial mat-r gene/nad1 gene complex

    Energy Technology Data Exchange (ETDEWEB)

    Wolstenhome, D.R.

    1996-12-31

    We have completed sequencing segments of the maize mitochondrial (mt) DNA that contains all five of the exons (A-E) of the gene (nad1) for subunit I of the respiratory chain NADH dehydrogenase. Analysis of these sequences indicates that exons B and C are joined by a continuous group II intron, but the remaining exons are associated with partial group II introns and are encoded at widely separated locations in the maize mtDNA molecule. We have shown that mature transcripts of the maize nad1 gene contain 23 edited nucleotides, and that transcripts of maize and soybean mat-r genes contain 15 and 14 edits, respectively. The majority of edits in nad1 transcripts result in amino acid replacements that increase similarity between the maize NAD1 protein and NAD1 proteins of other plant species and of animal species. We found that the intron between exons b and c is not edited. From data obtained using PCR and sequencing we have shown that transcripts containing all possible exon combinations exist in maize mitochondria.

  8. Design of Quadric Surfaces Courseware Based on MatLab-GUIDE%基于MatLab-GUIDE的二次曲面课件设计*

    Institute of Scientific and Technical Information of China (English)

    刘奇; 肖凡; 王翠; 周德强

    2013-01-01

    Makes teaching courseware based on the GUIDE of MatLab. Takes quadric surfaces of analytic geometry as an example, designs a friendly human-computer interaction interface in GUIDE, with the aid of program to attain the visualization of graphical complex in analytic geometry, which facilitates the improvement of students,learning interest as well as accelerates the spread and the use of MatLab at teaching.%基于MatLab-GUIDE进行教学课件制作,以解析几何中的二次曲面为例,在GUIDE中设计出人机交互友好界面,借助编程实现解析几何中复杂图形可视化,有利于提高学生学习兴趣,又有利于促进MatLab 在教学中推广和使用。

  9. Caractérisation et propriétés des "matériaux culturels"... vers une nouvelle discipline en Science des Matériaux

    OpenAIRE

    Robbiola, Luc

    1999-01-01

    This work mainly aims to introduce a new discipline in materials science: the cultural materials science, which is depicted through the example of the bronze alteration. Methodological aspects as well as presentation of research investigation performed both on ancient and modern copper-tin alloys are summarised. Illustrative examples are given. Ce rapport porte principalement sur la mise en place d'une nouvelle discipline en science des matériaux : la science des matériaux culturels. Celle...

  10. Perfect simulation and moment properties for the Matérn type III process

    DEFF Research Database (Denmark)

    Møller, Jesper; Huber, Mark L.; Wolpert, Robert L.

    2010-01-01

    In a seminal work, Bertil Matérn introduced several types of processes for modeling repulsive point processes. In this paper an algorithm is presented for the perfect simulation of the Matérn III process within a bounded window in , fully accounting for edge effects. A simple upper bound on the...

  11. Polyelectrolyte-Functionalized Nanofiber Mats Control the Collection and Inactivation of Escherichia coli

    Directory of Open Access Journals (Sweden)

    Katrina A. Rieger

    2016-04-01

    Full Text Available Quantifying the effect that nanofiber mat chemistry and hydrophilicity have on microorganism collection and inactivation is critical in biomedical applications. In this study, the collection and inactivation of Escherichia coli K12 was examined using cellulose nanofiber mats that were surface-functionalized using three polyelectrolytes: poly (acrylic acid (PAA, chitosan (CS, and polydiallyldimethylammonium chloride (pDADMAC. The polyelectrolyte functionalized nanofiber mats retained the cylindrical morphology and average fiber diameter (~0.84 µm of the underlying cellulose nanofibers. X-ray photoelectron spectroscopy (XPS and contact angle measurements confirmed the presence of polycations or polyanions on the surface of the nanofiber mats. Both the control cellulose and pDADMAC-functionalized nanofiber mats exhibited a high collection of E. coli K12, which suggests that mat hydrophilicity may play a larger role than surface charge on cell collection. While the minimum concentration of polycations needed to inhibit E. coli K12 was 800 µg/mL for both CS and pDADMAC, once immobilized, pDADMAC-functionalized nanofiber mats exhibited a higher inactivation of E. coli K12, (~97%. Here, we demonstrate that the collection and inactivation of microorganisms by electrospun cellulose nanofiber mats can be tailored through a facile polyelectrolyte functionalization process.

  12. Polycaprolactone-Chitin Nanofibrous Mats as Potential Scaffolds for Tissue Engineering

    Directory of Open Access Journals (Sweden)

    Min Sup Kim

    2012-01-01

    Full Text Available We describe here the preparation of poly(caprolactone (PCL-chitin nanofibrous mats by electrospinning from a blended solution of PCL and chitin dissolved in a cosolvent, 1,1,1,3,3,3-hexafluoro-2-propanol and trifluoroacetic acid. Scanning electron microscopy showed that the neutralized PCL-chitin nanofibrous mats were morphologically stable, with a mean diameter of 340.5±2.6 nm, compared with a diameter of 524.2±12.1 nm for PCL mats. The nanofibrous mats showed decreased water contact angles as the proportion of chitin increased. However, the tensile properties of nanofibrous mats containing 30~50% (wt/wt chitin were enhanced compared with PCL-only mats. In vitro studies showed that the viability of human dermal fibroblasts (HDFs for up to 7 days in culture was higher on composite (OD value: 1.42±0.09 than on PCL-only (0.51±0.14 nanofibrous mats, with viability correlated with chitin concentration. Together, our results suggest that PCL-chitin nanofibrous mats can be used as an implantable substrate to modulate HDF viability in tissue engineering.

  13. Using Talking Mats to Support Communication in Persons with Huntington's Disease

    Science.gov (United States)

    Ferm, Ulrika; Sahlin, Anna; Sundin, Linda; Hartelius, Lena

    2010-01-01

    Background: Many individuals with Huntington's disease experience reduced functioning in cognition, language and communication. Talking Mats is a visually based low technological augmentative communication framework that supports communication in people with different cognitive and communicative disabilities. Aims: To evaluate Talking Mats as a…

  14. Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

    Science.gov (United States)

    Wong, Hon Lun; Smith, Daniela-Lee; Visscher, Pieter T.; Burns, Brendan P.

    2015-10-01

    Modern microbial mats can provide key insights into early Earth ecosystems, and Shark Bay, Australia, holds one of the best examples of these systems. Identifying the spatial distribution of microorganisms with mat depth facilitates a greater understanding of specific niches and potentially novel microbial interactions. High throughput sequencing coupled with elemental analyses and biogeochemical measurements of two distinct mat types (smooth and pustular) at a millimeter scale were undertaken in the present study. A total of 8,263,982 16S rRNA gene sequences were obtained, which were affiliated to 58 bacterial and candidate phyla. The surface of both mats were dominated by Cyanobacteria, accompanied with known or putative members of Alphaproteobacteria and Bacteroidetes. The deeper anoxic layers of smooth mats were dominated by Chloroflexi, while Alphaproteobacteria dominated the lower layers of pustular mats. In situ microelectrode measurements revealed smooth mats have a steeper profile of O2 and H2S concentrations, as well as higher oxygen production, consumption, and sulfate reduction rates. Specific elements (Mo, Mg, Mn, Fe, V, P) could be correlated with specific mat types and putative phylogenetic groups. Models are proposed for these systems suggesting putative surface anoxic niches, differential nitrogen fixing niches, and those coupled with methane metabolism.

  15. MatLab Programming for Engineers Having No Formal Programming Knowledge

    Science.gov (United States)

    Shaykhian, Linda H.; Shaykhian, Gholam Ali

    2007-01-01

    MatLab is one of the most widely used very high level programming languages for Scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. Also, stated are the current limitations of the MatLab, which possibly can be taken care of by Mathworks Inc. in a future version to make MatLab more versatile.

  16. A Markov Random Field Model-Based Approach to Natural Image Matting

    Institute of Scientific and Technical Information of China (English)

    Sheng-You Lin; Jiao-Ying Shi

    2007-01-01

    This paper proposes a Markov Random Field (MRF) model-based approach to natural image matting with complex scenes.After the trimap for matting is given manually, the unknown region is roughly segmented into several joint sub-regions.In each sub-region, we partition the colors of neighboring background or foreground pixels into several clusters in RGB color space and assign matting label to each unknown pixel.All the labels are modelled as an MRF and the matting problem is then formulated as a maximum a posteriori (MAP) estimation problem.Simulated annealing is used to find the optimal MAP estimation.The better results can be obtained under the same user-interactions when images are complex.Results of natural image matting experiments performed on complex images using this approach are shown and compared in this paper.

  17. Biomedical Applications of Antibacterial Nanofiber Mats Made of Electrospinning with Wire Electrodes

    Directory of Open Access Journals (Sweden)

    Yi-Jun Pan

    2016-02-01

    Full Text Available Twisted stainless steel wires are used as wire electrodes for electrospinning the polyvinyl alcohol (PVA/zinc citrate nanofiber mats. The morphology and diameter of the nanofibers in PVA/zinc citrate nanofiber mats are evaluated. We measured the antibacterial efficacy against Staphylococcus aureus (S. aureus and Escherichia coli (E. coli of the nanofiber mats. We also examined the cell adhesion affinity of mammalian tissue culture cells on these nanofiber mats. Our results indicate that an increase in zinc citrate increases the viscosity and electrical conductivity of PVA solution. In addition, increasing zinc citrate results in a smaller diameter of nanofibers that reaches below 100 nm. According to the antibacterial test results, increasing zinc citrate enlarges the inhibition zone of S. aureus but only has a bacteriostatic effect against E. coli. Finally, cell adhesion test results indicate that all nanofiber mats have satisfactory cell attachment regardless of the content of zinc citrate.

  18. Grain trapping by filamentous cyanobacterial and algal mats: implications for stromatolite microfabrics through time.

    Science.gov (United States)

    Frantz, C M; Petryshyn, V A; Corsetti, F A

    2015-09-01

    Archean and Proterozoic stromatolites are sparry or fine-grained and finely laminated; coarse-grained stromatolites, such as many found in modern marine systems, do not appear until quite late in the fossil record. The cause of this textural change and its relevance to understanding the evolutionary history of stromatolites is unclear. Cyanobacteria are typically considered the dominant stromatolite builders through time, but studies demonstrating the trapping and binding abilities of cyanobacterial mats are limited. With this in mind, we conducted experiments to test the grain trapping and binding capabilities of filamentous cyanobacterial mats and trapping in larger filamentous algal mats in order to better understand grain size trends in stromatolites. Mats were cut into squares, inclined in saltwater tanks at angles from 0 to 75° (approximating the angle of lamina in typical stromatolites), and grains of various sizes (fine sand, coarse sand, and fine pebbles) were delivered to their surface. Trapping of grains by the cyanobacterial mats depended strongly on (i) how far filaments protruded from the sediment surface, (ii) grain size, and (iii) the mat's incline angle. The cyanobacterial mats were much more effective at trapping fine grains beyond the abiotic slide angle than larger grains. In addition, the cyanobacterial mats actively bound grains of all sizes over time. In contrast, the much larger algal mats trapped medium and coarse grains at all angles. Our experiments suggest that (i) the presence of detrital grains beyond the abiotic slide angle can be considered a biosignature in ancient stromatolites where biogenicity is in question, and, (ii) where coarse grains are present within stromatolite laminae at angles beyond the abiotic angle of slide (e.g., most modern marine stromatolites), typical cyanobacterial-type mats are probably not solely responsible for the construction, giving insight into the evolution of stromatolite microfabrics through time

  19. The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments

    OpenAIRE

    Chan, Clara S.; McAllister, Sean M.; Leavitt, Anna H.; Brian T. Glazer; Krepski, Sean T.; Emerson, David

    2016-01-01

    Microbes form mats with architectures that promote efficient metabolism within a particular physicochemical environment, thus studying mat structure helps us understand ecophysiology. Despite much research on chemolithotrophic Fe-oxidizing bacteria, Fe mat architecture has not been visualized because these delicate structures are easily disrupted. There are striking similarities between the biominerals that comprise freshwater and marine Fe mats, made by Beta- and Zetaproteobacteria, respecti...

  20. 75 FR 55360 - In the Matter of Mattingly Testing Services, Inc. Molt, MT; Order Revoking License (Effective...

    Science.gov (United States)

    2010-09-10

    ... be filed in accordance with the NRC E-Filing rule (72 FR 49139, August 28, 2007). The E-Filing... Mattingly Testing Services, Inc. Molt, MT; Order Revoking License (Effective Immediately) I Mattingly... should be revoked. Mattingly's license authorizes possession of radioactive materials that are...

  1. Spatially-resolved carbon flow through a hypersaline phototrophic microbial mat

    Science.gov (United States)

    Moran, J.; Lindemann, S. R.; Cory, A. B.; Courtney, S.; Cole, J. K.; Fredrickson, J.

    2013-12-01

    Hot Lake is a hypersaline, meromictic lake located in an endorheic basin in north-central Washington. Low annual rainfall and high evaporation rates contribute to the lake's high salinity. The predominant dissolved salt is magnesium sulfate, of which monimolimnion waters may seasonally exceed 2 M concentrations. Induced by its high salinity and meromictic nature, Hot Lake displays an inverse thermal gradient with deep horizons seasonally exceeding 50 °C. Despite extreme conditions, dense benthic microbial mats composed of cyanobacteria, anoxygenic photoheterotrophs, and bacterial heterotroph populations develop in the lake. These mats can exceed 1 cm in thickness and display vertical stratification in color due to bacterial pigmentation. Typical mat stratification includes an orange surface layer underlain by green and purple layers at increasing depth. Carbonates, including aragonite and magnesite, are observed within the mat and their formation is likely induced or influenced by microbial metabolic activities and associated pH excursions. We are exploring the role Hot Lake's microbial mats play in carbon cycling. Cyanobacteria are the dominant CO2-fixing organisms in the mat and we seek to understand the spatial and metabolic controls on how the carbon initially fixed by mat cyanobacteria is transferred to associated heterotrophic populations spread throughout the mat strata. Secondly, we seek to understand the overall net carbon balance of the mat through a growing season. We are using a stable isotope probing approach for assessing carbon uptake and migration through representative mat samples. We performed a series of ex situ incubations of freshly harvested mat samples in lake water amended with 13C-labeled bicarbonate or substrates commonly consumed by heterotrophs (including acetate and glucose) and using multiple stable isotope techniques to track label uptake, residence time, remineralization, and location within the mat. In addition to bulk isotope

  2. Antibacterial electrospun chitosan-polyethylene oxide nanocomposite mats containing ZIF-8 nanoparticles.

    Science.gov (United States)

    Kohsari, Iraj; Shariatinia, Zahra; Pourmortazavi, Seied Mahdi

    2016-10-01

    Antimicrobial chitosan-polyethylene oxide (CS-PEO) nanofiber mats loaded with 3, 5 and 10% (w/w) of zeolitic imidazolate framework-8 nanoparticles (ZIF-8 NPs, ∼60nm diameter) were developed by electrospinning technique. The CS-PEO-GA-3% ZIF-8 NPs crosslinked with glutaraldehyde (GA) vapor was also prepared. The electrospun mats were characterized by various analysis including FE-SEM, EDAX, elemental mapping, FT-IR, contact angle, TGA/DSC as well as tensile strength analysis. The nanofibers had average diameters within the range ∼70-120nm. Antimicrobial activities of the CS-PEO and CS-PEO-3% ZIF-8 mats were evaluated by the viable cell-counting method for determining their effectiveness in reducing or halting the growth of Staphylococcus aureus and Escherichia coli bacteria so that the CS-PEO mat containing 3% ZIF-8 revealed 100% bactericidal activity against both kinds of bacteria. The crosslinked CS-PEO-GA-3% ZIF-8 NPs sample was less thermally stable but more hydrophilic than its related non-crosslinked mat reflecting there was no need to crosslink the fibers using a chemical crosslinker having adverse effects. The highest hydrophobicity and appropriate thermal and tensile properties of CS-PEO-3% ZIF-8 NPs among those of the mats including 5 and 10% ZIF-8 NPs suggested that the mentioned mat is the most suitable sample for food coating applications. PMID:27311504

  3. Modification of PLGA Nanofibrous Mats by Electron Beam Irradiation for Soft Tissue Regeneration

    Directory of Open Access Journals (Sweden)

    Jae Baek Lee

    2015-01-01

    Full Text Available Biodegradable poly(lactide-co-glycolide (PLGA has found widespread use in modern medical practice. However, the degradation rate of PLGA should be adjusted for specific biomedical applications such as tissue engineering, drug delivery, and surgical implantation. This study focused on the effect of electron beam radiation on nanofibrous PLGA mats in terms of physical properties and degradation behavior with cell proliferation. PLGA nanofiber mats were prepared by electrospinning, and electron beam was irradiated at doses of 50, 100, 150, 200, 250, and 300 kGy. PLGA mats showed dimensional integrity after electron beam irradiation without change of fiber diameter. The degradation behavior of a control PLGA nanofiber (0 kGy and electron beam-irradiated PLGA nanofibers was analyzed by measuring the molecular weight, weight loss, change of chemical structure, and fibrous morphology. The molecular weight of the PLGA nanofibers decreased with increasing electron beam radiation dose. The mechanical properties of the PLGA nanofibrous mats were decreased with increasing electron beam irradiation dose. Cell proliferation behavior on all electron beam irradiated PLGA mats was similar to the control PLGA mats. Electron beam irradiation of PLGA nanofibrous mats is a potentially useful approach for modulating the biodegradation rate of tissue-specific nonwoven nanofibrous scaffolds, specifically for soft tissue engineering applications.

  4. Cantera Integration with the Toolbox for Modeling and Analysis of Thermodynamic Systems (T-MATS)

    Science.gov (United States)

    Lavelle, Thomas M.; Chapman, Jeffryes W.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei

    2014-01-01

    NASA Glenn Research Center (GRC) has recently developed a software package for modeling generic thermodynamic systems called the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS). T-MATS is a library of building blocks that can be assembled to represent any thermodynamic system in the Simulink (The MathWorks, Inc.) environment. These elements, along with a Newton Raphson solver (also provided as part of the T-MATS package), enable users to create models of a wide variety of systems. The current version of T-MATS (v1.0.1) uses tabular data for providing information about a specific mixture of air, water (humidity), and hydrocarbon fuel in calculations of thermodynamic properties. The capabilities of T-MATS can be expanded by integrating it with the Cantera thermodynamic package. Cantera is an object-oriented analysis package that calculates thermodynamic solutions for any mixture defined by the user. Integration of Cantera with T-MATS extends the range of systems that may be modeled using the toolbox. In addition, the library of elements released with Cantera were developed using MATLAB native M-files, allowing for quicker prototyping of elements. This paper discusses how the new Cantera-based elements are created and provides examples for using T-MATS integrated with Cantera.

  5. Fabrication of robust Antheraea assama fibroin nanofibrous mat using ionic liquid for skin tissue engineering.

    Science.gov (United States)

    Srivastava, Chandra Mohan; Purwar, Roli

    2016-11-01

    Electrospinning is an emerging technique used for fabrication of nanofibrous mats for skin tissue engineering applications. The aim of this study centered on fabrication of muga fibroin electrospun mats by using ionic liquid and its characterizations. The muga fibroin extracted from cocoon of Antheraea assama is dissolved in 1-butyl, 3-methyl imidazolium acetate (BMIMAc), a green solvent, to prepare a dope solution for electrospinning. The molecular weight, rheology and structural properties of dope solution are characterized. The process parameters of electrospinning machine such as voltage and concentration of dope solution are varied to obtain nanofibrous mats. The nanofibrous mat having average fiber diameter of 160nm are obtained from 10% w/v concentration of muga fibroin in BMIMAc with an applied voltage of 20KV. The mechanical, structural, physical and thermal properties of muga nanofibrous mat (MNF) are analyzed and compare with muga cast film. The cytocompatibility test is performed using L929 fibroblast cells. It is observed that muga nanofibrous mat support higher growth of fibroblast cells (pefficiency of gentamycin sulphate loaded muga nanofibrous mat are found to be significantly higher (pmaterial for skin tissue engineering. PMID:27524022

  6. Increasing Mechanical Properties of 2-D-Structured Electrospun Nylon 6 Non-Woven Fiber Mats

    Directory of Open Access Journals (Sweden)

    Chunhui Xiang

    2016-04-01

    Full Text Available Tensile strength, Young’s modulus, and toughness of electrospun nylon 6 non-woven fiber mats were improved by increasing individual nanofiber strength and fiber–fiber load sharing. Single-walled carbon nanotubes (CNTs were used as reinforcement to increase the strength of the electrospun nylon 6 nanofibers. Young’s modulus, tensile strength, and toughness of the nylon 6 non-woven fiber mats electrospun from 20 wt % solutions increased 51%, 87%, and 136%, respectively, after incorporating 1 wt % CNTs into the nylon 6 nanofibers. Three methods were investigated to enhance fiber–fiber load sharing: increasing friction between fibers, thermal bonding, and solvent bonding. The addition of beaded nylon 6 nanofibers into the non-woven fiber mats to increase fiber-fiber friction resulted in a statistically significantly increase in Young’s modulus over comparable smooth non-woven fiber mats. After annealing, tensile strength, elongation, and toughness of the nylon 6 non-woven fiber mats electrospun from 20 wt % + 10 wt % solutions increased 26%, 28%, and 68% compared to those from 20 wt % solutions. Solvent bonding with formic acid vapor at room temperature for 30 min caused increases of 56%, 67%, and 39% in the Young’s modulus, tensile strength, and toughness of non-woven fiber mats, respectively. The increases attributed to increased individual nanofiber strength and solvent bonding synergistically resulted in the improvement of Young’s modulus of the electrospun nylon 6 non-woven fiber mats.

  7. Geochemical Characteristics and Origin of Tar Mats from the Yaha Field in Tarim Basin,China

    Institute of Scientific and Technical Information of China (English)

    张敏; 张俊; 等

    1999-01-01

    Tar mats were firstly discovered and determined accurately in terrestrial oil and gas reservoirs associated with Lower Tertiary sandstone reservoirs in the Yaha field of the Tarim Basin,China,by thin-layer chromatography-flame ionization detector(TLC-FID)and Rock-Eval analysis.The relative content of asphaltene in gross composition of tar mat extracts accounts for more than 30%,that in the corresponding oil leg less than 20%.In the geochemical description profile of oil gas reservoirs,drastic changes in asphaltene contents between tar mats and oil legs could be discovered.This in an important marker to determine tar mats.Distribution characteristics of saturated and aromaic hydrocarbons from reservoir core extracts and crude oils in the Yaha oil and gas reservoirs in the Tarim Basin are described systematically in this paper,and the results show there are similarities among n-alkane distribution characteristics,biomarker distribution characteristics and their combined characteristics of saturated hydrocarbons,and the geochemical characteristics of aromatic hydrocarbons for tar mats.oil leg,asphaltic sand and crude oil.These characteristics suggest the hydrocarbons in these samples were originated from the common source rocks.However,the geochemical characteristics of tar mats reveales that the mechanism of formation of tar mats is the precipitation of asphaltene from crude oils in petroleum reservoirs caused by increased dissolved gas in oil legs(gas injection).

  8. The micromorphology of Younger Dryas-aged black mats from Nevada, Arizona, Texas and New Mexico

    Science.gov (United States)

    Harris-Parks, Erin

    2016-01-01

    Black mats are organic-rich sediments and soils that form in wet environments associated with spring discharge. Micromorphological and geochemical analyses of 25 black mats dating to the Younger Dryas Chronozone (12.9-11.7 ka) and early Holocene were conducted to determine their composition and depositional environment. Samples were collected from Arizona, New Mexico, Texas and Nevada. Micromorphological analyses were conducted on thin sections using polarized and blue fluorescent light. These analyses determined that black mats contain humic acids, fine (5-20 μm) plant fragments, diatoms, phytoliths, and gastropods. The dominant type of organic matter in black mats is derived from herbaceous plants, contradicting previous studies that supported algal or charcoal sources. Differences in the micromorphological characteristics of the samples revealed that black mats formed as three different types, organic horizons, moist soils and, ponded sediments, depending on their topographic position in relation to the water table. The microscopic evidence found in black mats supports the presence of widespread wet environments in Nevada and Arizona during the Younger Dryas Chronozone, clearly indicating a sustained period of greater effective moisture, optimal for spring discharge and black mat formation.

  9. Instrument intercomparison in the pulsed neutron fieldsat the CERN HiRadMat facility

    CERN Document Server

    Aza, E; Cassell, C; Charitonidis, N; Harrouch, E; Manessi, G P; Pangallo, M; Perrin, D; Samara, E; Silari, M

    2014-01-01

    An intercomparison of the performances of active neutron detectors was carried out in pulsed neutron fi elds in the new HiRadMat facility at CERN. Five detectors were employed: four of them (two ionization chambers and two rem counters) are routinely employed in the CERN radiation monitoring system, while the fi fth is a novel instrument, called LUPIN, speci fi cally conceived for applications in pulsed neutron fi elds. The measurements were performed in the stray fi eld generated by a proton beam of very short duration with momentum of 440 GeV/c impinging on a dump. The beam intensity was steadily increased during the experiment by more than three orders of magnitude, with an H*(10) due to neutrons at the detector reference positions varying between a few nSv per burst and a few m Sv per burst, whereas the gamma contribution to the total H*(10) was negligible. The aim of the experiment was to evaluate the linearity of the detector response in extreme pulsed conditions as a function of the neutron burst in- t...

  10. Towards Interoperability in Genome Databases: The MAtDB (MIPS Arabidopsis Thaliana Database) Experience.

    Science.gov (United States)

    Schoof, Heiko

    2003-01-01

    Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating heterogenous data and enabling data mining. In comparison to a data warehousing approach, where integration is achieved through replication of all relevant data in a unified schema, distributed approaches provide greater flexibility and maintainability. These are important in a field where new data is generated rapidly and our understanding of the data changes. Interoperability between distributed data sources allows data maintenance to be separated from integration and analysis. Simple ways to access the data can facilitate the development of new data mining tools and the transition from model genome analysis to comparative genomics. With the MIPS Arabidopsis thaliana genome database (MAtDB, http://mips.gsf.de/proj/thal/db) our aim is to go beyond a data repository towards creating an integrated knowledge resource. To this end, the Arabidopsis genome has been a backbone against which to structure and integrate heterogenous data. The challenges to be met are continuous updating of data, the design of flexible data models that can evolve with new data, the integration of heterogenous data, e.g. through the use of ontologies, comprehensive views and visualization of complex information, simple interfaces for application access locally or via the Internet, and knowledge transfer across species. PMID:18629123

  11. Towards Interoperability in Genome Databases: The MAtDB (MIPS Arabidopsis Thaliana Database Experience

    Directory of Open Access Journals (Sweden)

    Heiko Schoof

    2006-04-01

    Full Text Available Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating heterogenous data and enabling data mining. In comparison to a data warehousing approach, where integration is achieved through replication of all relevant data in a unified schema, distributed approaches provide greater flexibility and maintainability. These are important in a field where new data is generated rapidly and our understanding of the data changes. Interoperability between distributed data sources allows data maintenance to be separated from integration and analysis. Simple ways to access the data can facilitate the development of new data mining tools and the transition from model genome analysis to comparative genomics. With the MIPS Arabidopsis thaliana genome database (MAtDB, http://mips.gsf.de/proj/thal/db our aim is to go beyond a data repository towards creating an integrated knowledge resource. To this end, the Arabidopsis genome has been a backbone against which to structure and integrate heterogenous data. The challenges to be met are continuous updating of data, the design of flexible data models that can evolve with new data, the integration of heterogenous data, e.g. through the use of ontologies, comprehensive views and visualization of complex information, simple interfaces for application access locally or via the Internet, and knowledge transfer across species.

  12. Isolation and characterization of cyanobacteria from microbial mats of the Ebro Delta, Spain.

    Science.gov (United States)

    Urmeneta, Jordi; Navarrete, Antoni; Huete, Javier; Guerrero, Ricardo

    2003-03-01

    Isolation and identification of several strains of cyanobacteria from microbial mats of the Ebro Delta, Spain, are described. A series of tenfold dilutions was the first step of isolation. Self-isolation techniques, which use one or several physiological characteristics of a cyanobacterium, were applied in some cases to obtain enrichment cultures. Twelve filamentous strains were isolated and stored in axenic culture. As only a few cyanobacterial species can be frozen and revived without any cryoprotective agent, preservation of isolated strains was assayed with several cryoprotective solutions. Methanol and glycerol were not suitable as cryoprotective agents for most of the isolates. Dimethyl sulfoxide (DMSO) was apparently the best cryoprotector. A new method, which used a filter paper as a growing substratum that later could be directly stored at -80 degrees C, was successfully used. A morphological study of each strain under light and electron microscopy was made to classify them. All isolated strains belong to phylum BX, Class 1, subsection III of the Bergey's manual of systematic bacteriology, 2nd ed., vol. 1. Most genera are included in the LPP group as Lyngbya aestuarii and Microcoleus chthonoplastes. PMID:12567243

  13. Electron Paramagnetic Resonance Study of a Photosynthetic Microbial Mat and Comparison with Archean Cherts

    Science.gov (United States)

    Bourbin, M.; Derenne, S.; Gourier, D.; Rouzaud, J.-N.; Gautret, P.; Westall, F.

    2012-12-01

    Organic radicals in artificially carbonized biomass dominated by oxygenic and non-oxygenic photosynthetic bacteria, Microcoleus chthonoplastes-like and Chloroflexus-like bacteria respectively, were studied by Electron Paramagnetic Resonance (EPR) spectroscopy. The two bacteria species were sampled in mats from a hypersaline lake. They underwent accelerated ageing by cumulative thermal treatments to induce progressive carbonization of the biological material, mimicking the natural maturation of carbonaceous material of Archean age. For thermal treatments at temperatures higher than 620 °C, a drastic increase in the EPR linewidth is observed in the carbonaceous matter from oxygenic photosynthetic bacteria and not anoxygenic photosynthetic bacteria. This selective EPR linewidth broadening reflects the presence of a catalytic element inducing formation of radical aggregates, without affecting the molecular structure or the microstructure of the organic matter, as shown by Raman spectroscopy and Transmission Electron Microscopy. For comparison, we carried out an EPR study of organic radicals in silicified carbonaceous rocks (cherts) from various localities, of different ages (0.42 to 3.5 Gyr) and having undergone various degrees of metamorphism, i.e. various degrees of natural carbonization. EPR linewidth dispersion for the most primitive samples was quite significant, pointing to a selective dipolar broadening similar to that observed for carbonized bacteria. This surprising result merits further evaluation in the light of its potential use as a marker of past bacterial metabolisms, in particular oxygenic photosynthesis, in Archean cherts.

  14. Grazing effects by Nereis diversicolor on development and growth of green algal mats

    Science.gov (United States)

    Engelsen, Anna; Pihl, Leif

    2008-08-01

    Nereis diversicolor is generally considered to be a predator and deposit feeder, but have also been found to graze on benthic algae in shallow coastal areas. In this study we investigated the grazing effects on the development and growth of green algae, Ulva spp. Algal growth was studied in an experiment including two levels of sediment thickness; 100 mm sediment including macrofauna and 5 mm sediment without macrofauna, and three treatments of varying algal biomass; sediment with propagules, sediment with low algal biomass (120 g dry weight (dwt) m - 2 ) and sediment with high algal biomass (240 g dwt m - 2 ). In the 100 mm sediment, with a natural population of macrofauna, N. diversicolor was the dominating (60% of total biomass) species. After three weeks of experimentation the result showed that N. diversicolor was able to prevent initial algal growth, affect growth capacity and also partly reduce full-grown algal mats. The weight of N. diversicolor was significantly higher for polychaetes in treatments with algae added compared to non-algal treatments. There were also indications that a rich nutrient supply per algae biomass counteracted the grazing capacity of N. diversicolor.

  15. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    Energy Technology Data Exchange (ETDEWEB)

    Beam, Jake; Bernstein, Hans C.; Jay, Z.; Kozubal, Mark; Jennings, Ryan; Tringe, Susannah G.; Inskeep, William P.

    2016-02-15

    Iron oxide microbial mats are ubiquitous geobiological features on Earth and occur in extant acidic hot springs of Yellowstone National Park (YNP), WY, USA, and form as a result of microbial processes. The relative contribution of different organisms to the development of these mat ecosystems is of specific interest. We hypothesized that chemolithoautotrophic organisms contribute to the early development and production of Fe(III)-oxide mats, which could support later-colonizing heterotrophic microorganisms. Sterile glass slides were incubated in the outflow channels of two acidic geothermal springs in YNP, and spatiotemporal changes in Fe(III)-oxide accretion and abundance of relevant community members were measured. Lithoautotrophic Hydrogenobaculum spp. were first colonizers and the most abundant taxa identified during early successional stages (7 – 40 days). Populations of M. yellowstonensis colonized after ~ 7 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized after 30 days, and emerge as the dominant functional guild in mature iron oxide mats (1 – 2 cm thick) that form after 70 – 120 days. First-order rate constants of iron oxide accretion ranged from 0.05 – 0.046 day-1, and reflected the absolute amount of iron accreted. Micro- and macroscale microterracettes were identified during iron oxide mat development, and suggest that the mass transfer of oxygen limits microbial growth. This was also demonstrated using microelectrode measurements of oxygen as a function of mat depth, which showed steep gradients in oxygen from the aqueous mat interface to ~ 1 mm. The formation and succession of amorphous Fe(III)-oxide mat communities follows a predictable pattern of distinct stages and growth. The successional stages and microbial signatures observed in these extant Fe(III)-oxide mat communities may be relevant to other past or present Fe(III)-oxide mineralizing systems.

  16. Structural and functional conservation of fungal MatA and human SRY sex determining proteins

    OpenAIRE

    Czaja, Wioletta; Miller, Karen Y.; Skinner, Michael K.; Bruce L. Miller

    2014-01-01

    Sex determination in animals and fungi is regulated by specific sex determining genes. The Aspergillus nidulans (A.nidulans) mating type gene matA and the human SRY (Sex Determining Region Y) encode proteins containing a single HMG (High Mobility Group) domain. Analysis of the amino acid sequence of MatA and SRY transcription factors revealed significant structural similarity. The human SRY protein is able to functionally replace MatA and drives the sexual cycle in the fungus A. nidulans. Fun...

  17. Improvement of hydrophilic properties of electrospun polyamide-imide fibrous mats by atmospheric-pressure plasma treatment

    Science.gov (United States)

    Park, Soo-Jin; Yop Rhee, Kyong; Jin, Fan-Long

    2015-03-01

    Polyamide-imide (PAI) fibrous mats were fabricated through electrospinning and further treated with atmospheric-pressure plasma. The surface characteristics of the PAI fibrous mats were examined to determine the effect of plasma treatment on the hydrophilic properties. FT-IR, X-ray photoelectron spectroscopy, and contact-angle analysis indicated that the hydrophilicity of the PAI fibrous mats increased upon the introduction of hydrophilic groups by plasma treatment. The concentration of functional groups, including oxygen, and the surface roughness of the PAI fibrous mats increased with increasing treatment time. The optimum plasma treatment time for surface modification of the PAI fibrous mats under atmospheric pressure was 120 s.

  18. [Obtainment of pineapple juice powder by foam-mat drying].

    Science.gov (United States)

    Beristain, C I; Cortés, R; Casillas, M A; Díaz, R

    1991-06-01

    The foam-mat production and stability using pineapple juice concentrate (25, 30 and 40 degrees Brix), adding a surfactants mixture and maltodextrin (DE 10) as co-adjuvant, stirred in a commercial mixer, was studied. Adequate foam formation conditions were as follows: concentrate of 25 degrees Brix using surface active agents (Sorbac 60-Polisorbac 80) 0.285% surface active agent/total solids, HLB = 6, and stirring time, 7 min. The foam was dehydrated in an oven dried with a horizontal air flow circulation set at 60, 70 and 80 degrees C using 3, 5 and 10 mm bed depths. The best conditions were obtained at 60 degrees C and 5 mm bed depth. The product had a particle size of sieve 40-80, and a moisture content of 3%. It was then packaged in multilayer plastic film and stored at environmental conditions. No brown color formation or mold growth was detected during storage. Pineapple juice and a refreshing drink were prepared. The general acceptability in a community indicated that 95% of the population involved accepted the product. PMID:1811453

  19. Hydrogel-Electrospun Fiber Mat Composite Coatings for Neural Prostheses

    Directory of Open Access Journals (Sweden)

    Ning eHan

    2011-03-01

    Full Text Available Achieving stable, long-term performance of implanted neural prosthetic devices has been challenging because of implantation related neuron loss and a foreign body response that results in encapsulating glial scar formation. To improve neuron-prosthesis integration and form chronic, stable interfaces, we investigated the potential of neurotrophin-eluting hydrogel-electrospun fiber mat (EFM composite coatings. In particular, poly(ethylene glycol-poly(ε-caprolactone (PEGPCL hydrogel- poly(ε-caprolactone (PCL EFM composites were applied as coatings for multielectrode arrays (MEAs. Coatings were stable and persisted on electrode surfaces for over 1 month under an agarose gel tissue phantom and over 9 months in a PBS immersion bath. To demonstrate drug release, a neurotrophin, nerve growth factor (NGF, was loaded in the PEGPCL hydrogel layer, and coating cytotoxicity and sustained NGF release were evaluated using a PC12 cell culture model. Quantitative MTT assays showed that these coatings had no significant toxicity toward PC12 cells, and neurite extension at day 7 and 14 confirmed sustained release of NGF at biologically significant concentrations for at least 2 weeks. Our results demonstrate that hydrogel-EFM composite materials can be applied to neural prostheses as a means to improve neuron-electrode proximity and enhance long-term device performance and function.

  20. Drying Spirulina with Foam Mat Drying at Medium Temperature

    Directory of Open Access Journals (Sweden)

    Aji Prasetyaningrum

    2012-10-01

    Full Text Available Spirulina is a single cell blue green microalgae (Cyanobacteria containing many Phytonutrients (Beta-carotene, Chlorophyl, Xanthophyl, Phyocianin using as anti-carcinogen in food. Producing dry spirulina by quick drying process at medium temperature is very important to retain the Phytonutrient quality. Currently, the work is still challenging due to the gel formation that block the water diffusion from inside to the surface.  This research studies the performance of foam-mat drying on production of dry spirulina. In this method the spirulina was mixed with foaming agent (glair/egg albumen, popular as white egg at 2.5% by weight at air velocity 2.2 m/sec. Here, the effect of spirulina thickness and operational temperature on drying time and quality (Beta-carotene and color were observed. The drying time was estimated based on the measurement of water content in spirulina versus time. Result showed that the thicker spirulina, the longer drying time. Conversely, the higher operational temperature, faster drying time. At thickness ranging 1-3 mm and operational temperature below 70oC, the quality of spirulina can fit the market requirement

  1. Lipophilic pigments from cyanobacterial (blue-green algal) and diatom mats in Hamelin Pool, Shark Bay, Western Australia

    Science.gov (United States)

    Palmisano, A. C.; Summons, R. E.; Cronin, S. E.; Des Marais, D. J.

    1989-01-01

    Lipophilic pigments were examined in microbial mat communities dominated by cyanobacteria in the intertidal zone and by diatoms in the subtidal and sublittoral zones of Hamelin Pool, Shark Bay, Western Australia. These microbial mats have evolutionary significance because of their similarity to lithfied stromatolites from the Proterozoic and Early Paleozoic eras. Fucoxanthin, diatoxanthin, diadinoxanthin, beta-carotene, and chlorophylls a and c characterized the diatom mats, whereas cyanobacterial mats contained myxoxanthophyll, zeaxanthin, echinenone, beta-carotene, chlorophyll a and, in some cases, sheath pigment. The presence of bacteriochlorophyll a within the mats suggest a close association of photosynthetic bacteria with diatoms and cyanobacteria. The high carotenoids : chlorophyll a ratios (0.84-2.44 wt/wt) in the diatom mats suggest that carotenoids served a photoprotective function in this high light environment. By contrast, cyanobacterial sheath pigment may have largely supplanted the photoprotective role of carotenoids in the intertidal mats.

  2. Natural antioxidant from yerba maté (Ilex paraguariensis St. Hil. prevents hamburger peroxidation

    Directory of Open Access Journals (Sweden)

    Erica Lemos Ferreira

    2011-08-01

    Full Text Available The aim of this study was to evaluate whether yerba maté alcoholic extracts at very low concentrations (0.01 and 0.1%, prevent/retard lipid peroxidation in beef hamburgers without impairing sensory acceptability. For this TBARs and hexanal levels, fatty acid profile and cholesterol oxides were evaluated as oxidation parameters in beef hamburgers during 90 days' storage. The addition of 0.01% yerba maté ethanolic extracts proved inefficient in restraining the lipid peroxidation while the addition of 0.1% resulted in efficient antioxidant activity. Sensory evaluation of hamburger containing 0.1% yerba maté ethanolic extracts showed good acceptability. Yerba maté ethanolic extracts could entirely or partially replace the phenolic synthetic antioxidants in beef hamburgers only when used at above legally allowed concentrations for antioxidant additives (0.01%.

  3. Marine Microbial Mats and the Search for Evidence of Life in Deep Time and Space

    Science.gov (United States)

    Des Marais, David J.

    2011-01-01

    Cyanobacterial mats in extensive seawater evaporation ponds at Guerrero Negro, Baja California, Mexico, have been excellent subjects for microbial ecology research. The studies reviewed here have documented the steep and rapidly changing environmental gradients experienced by mat microorganisms and the very high rates of biogeochemical processes that they maintained. Recent genetic studies have revealed an enormous diversity of bacteria as well as the spatial distribution of Bacteria, Archaea and Eukarya. These findings, together with emerging insights into the intimate interactions between these diverse populations, have contributed substantially to our understanding of the origins, environmental impacts, and biosignatures of photosynthetic microbial mats. The biosignatures (preservable cells, sedimentary fabrics, organic compounds, minerals, stable isotope patterns, etc.) potentially can serve as indicators of past life on early Earth. They also can inform our search for evidence of any life on Mars. Mars exploration has revealed evidence of evaporite deposits and thermal spring deposits; similar deposits on Earth once hosted ancient microbial mat ecosystems.

  4. Manipulative Experimental Approaches to Addressing Geobiological Questions in Microbial Mat and Stromatolite Research

    Science.gov (United States)

    Bebout, I. Lee

    2005-01-01

    We will present a short synopsis of experimental approaches using greenhouse flume systems to address questions of biogeochemical cycling, mineral formation and 3-d structure for Guerrero Negro microbial mats and Highborne Cay Stromatolites.

  5. El telescopi MAGIC aporta llum al coneixement de la matèria fosca

    OpenAIRE

    Doro, Michele

    2011-01-01

    La matèria fosca és el component majoritari de l'Univers: hi ha quatre vegades més matèria fosca que matèria normal. Tot i així, és una gran desconeguda: no emet ni absorbeix la llum directament i només es veu afectada per la força de la gravetat. Ara bé, quan dues partícules de matèria fosca col·lisionen, es poden aniquilar i generar raigs gamma, que són fotons amb milions de vegades més energia que la llum visible, i que poden ser detectats per instruments com el telescopi MAGIC, un experim...

  6. VocMat projekt - uudsed e-õppe võimalused turismiasjalistele / Heli Tooman

    Index Scriptorium Estoniae

    Tooman, Heli, 1949-

    2008-01-01

    Turismivaldkonna spetsialistidele mõeldud koolitusprojektist VocMat (Vocational Management Training for the Tourism Industry). Projekti partneriteks Eestis on Ettevõtluse Arendamise Sihtasutuse Turismiarenduskeskus ja Tartu Ülikooli Pärnu kolledzh. Lisa: Kokkuvõte

  7. Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS) User's Guide

    Science.gov (United States)

    Chapman, Jeffryes W.; Lavelle, Thomas M.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei

    2014-01-01

    The Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS) software package is an open source, MATLABSimulink toolbox (plug in) that can be used by industry professionals and academics for the development of thermodynamic and controls simulations.

  8. Life in Oligotropic Desert Environments: Contrasting Taxonomic and Functional Diversity of Two Microbial Mats with Metagenomics

    Science.gov (United States)

    Bonilla-Rosso, G.; Peimbert, M.; Olmedo, G.; Alcaraz, L. D.; Eguiarte, L. E.; Souza, V.

    2010-04-01

    The metagenomic analysis of two microbial mats from the oligotrophic waters in the Cuatrociéngas basin reveals large differences both at taxonomic and functional level. These are explained in terms of environmental stability and nutrient availability.

  9. Fabrication and characterization of superhydrophobic and superlipophilic silica nanofibers mats with excellent heat resistance

    Directory of Open Access Journals (Sweden)

    Gao S.

    2016-01-01

    Full Text Available A kind of silica nanofibers (SNF mats with superhydrophobicity and superlipophilicity as well as excellent heat resistance, had been prepared by modifying of 1, 1, 1, 3, 3, 3-hexamethyldisilazane on electrospun SNF mats. The effects of heat treatment time on properties of modified SNF mats were investigated by scanning electron microscopy, nitrogen absorption analysis, X-ray photoelectron spectroscopy, and contact angle measurement. With high specific surface area 240.1 m2/g, the optimal modified SNF mat approached water contact angle (WCA 153.2° and fuel contact angle (FCA 0°, furthermore, even after annealing by 450°C in air for 1h , WCA remained at 135.5° and FCA kept at 3.8°, which opened a new way to improve heat resistance of fuel-water filter paper.

  10. ELECTRO-THERMAL EFFECTS AND DEFORMATION RESPONSE OF CARBON FIBER MAT CEMENT BEAMS

    Institute of Scientific and Technical Information of China (English)

    ZhuSirong; LiZhuoqiu; SongXianhui

    2003-01-01

    A carbon fiber mat is a sheet composed of intercrossing short carbon fibers, which has more stable and lower electrical resistivity compared with dispersed short carbon fiber mixed in cement. Thereby carbon fiber mat cement could exhibit obvious electro-thermal effect. When electrified, the temperature of composite structures made up of cement mortar and carbon fiber mat will rise rapidly. If the temperature field is not uniform, temperature difference will cause structures to deform, which can be used to adjust the deformation of structures. The temperature field and deformation response driven by the electro-thermal effects of a type of carbon fiber mat cement beams are studied. Firstly, the temperature and deformation responses are studied using theories of thermal conduction and elasticity. Secondly, experimental results are given to verify the theoretical solution. These two parts lay the foundation for temperature and deformation adjustment.

  11. Electrically conductive polyaniline-coated electrospun poly(vinylidene fluoride mats

    Directory of Open Access Journals (Sweden)

    Claudia eMerlini

    2015-02-01

    Full Text Available Electrically conductive polyaniline (PANI-coated electrospun poly(vinylidene fluoride (PVDF mats were fabricated through aniline (ANI oxidative polymerization on electrospun PVDF mats. The effect of polymerization condition on structure and property of PVDF/PANI mats was investigated. The electrical conductivity and PANI content enhanced significantly with increasing ANI concentration due to the formation of a conducting polymer layer that completely coated the PVDF fibers surface. The PANI deposition on the PVDF fibers surface increased the Young Modulus and the elongation at break reduced significantly. Attenuated Total Reflectance-Fourier Transform Infrared spectroscopy (ATR-FTIR revealed that the electrospun PVDF and PVDF/PANI mats display a polymorph crystalline structure, with absorption bands associated to the β, α and γ phases.

  12. Fabrication and In Vitro/In Vivo Performance of Mucoadhesive Electrospun Nanofiber Mats Containing α-Mangostin.

    Science.gov (United States)

    Samprasit, Wipada; Rojanarata, Theerasak; Akkaramongkolporn, Prasert; Ngawhirunpat, Tanasait; Kaomongkolgit, Ruchadaporn; Opanasopit, Praneet

    2015-10-01

    This study aimed to fabricate mucoadhesive electrospun nanofiber mats containing α-mangostin for the maintenance of oral hygiene and reduction of the bacterial growth that causes dental caries. Synthesized thiolated chitosan (CS-SH) blended with polyvinyl alcohol (PVA) was selected as the mucoadhesive polymer. α-Mangostin was incorporated into the CS-SH/PVA solution and electrospun to obtain nanofiber mats. Scanning electron microscopy, differential scanning calorimetry, X-ray diffraction, and tensile strength testing were used to characterize the mats. The swelling degree and mucoadhesion were also determined. The nanofiber mats were further evaluated regarding their α-mangostin content, in vitro α-mangostin release, antibacterial activity, cytotoxicity, in vivo performance, and stability. The results indicated that the mats were in the nanometer range. The α-mangostin was well incorporated into the mats, with an amorphous form. The mats showed suitable tensile strength, swelling, and mucoadhesive properties. The loading capacity increased when the initial amount of α-mangostin was increased. Rapid release of α-mangostin from the mats was achieved. Additionally, a fast bacterial killing rate occurred at the lowest concentration of nanofiber mats when α-mangostin was added to the mats. The mats were less cytotoxic after use for 72 h. Moreover, in vivo testing indicated that the mats could reduce the number of oral bacteria, with a good mouth feel. The mats maintained the amount of α-mangostin for 6 months. The results suggest that α-mangostin-loaded mucoadhesive electrospun nanofiber mats may be a promising material for oral care and the prevention of dental caries. PMID:25716329

  13. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats

    Directory of Open Access Journals (Sweden)

    Jackson Z Lee

    2014-02-01

    Full Text Available Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB. However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico -- permanently submerged Microcoleus microbial mats (GN-S, and intertidal Lyngbya microbial mats (GN-I -- were used in microcosm diel manipulation experiments with 3-(3,4-dichlorophenyl-1,1-dimethylurea (DCMU, molybdate, ammonium addition, and physical disruption to understand the processes responsible for hydrogen cycling between mat microbes. Across microcosms, H2 production occurred under dark anoxic conditions with simultaneous production of a suite of organic acids. H2 production was not significantly affected by inhibition of nitrogen fixation, but rather appears to result from constitutive fermentation of photosynthetic storage products by oxygenic phototrophs. Comparison to accumulated glycogen and to CO2 flux indicated that, in the GN-I mat, fermentation released almost all of the carbon fixed via photosynthesis during the preceding day, primarily as organic acids. Across mats, although oxygenic and anoxygenic phototrophs were detected, cyanobacterial [NiFe]-hydrogenase transcripts predominated. Molybdate inhibition experiments indicated that SRBs from a wide distribution of dsrA phylotypes were responsible for H2 consumption. Incubation with 13C-acetate and nanoSIMS (secondary ion mass-spectrometry indicated higher uptake in both Chloroflexi and SRBs relative to other filamentous bacteria. These manipulations and diel incubations confirm that Cyanobacteria were the main fermenters in Guerrero Negro mats and that the net flux of nighttime fermentation byproducts (not only hydrogen was largely regulated by the interplay between Cyanobacteria, SRBs, and Chloroflexi.

  14. Identification of the Mating-Type (MAT) Locus That Controls Sexual Reproduction of Blastomyces dermatitidis

    OpenAIRE

    Li, Wenjun; Sullivan, Thomas D.; Walton, Eric; Averette, Anna Floyd; Sakthikumar, Sharadha; Cuomo, Christina A.; Klein, Bruce S.; Heitman, Joseph

    2013-01-01

    Blastomyces dermatitidis is a dimorphic fungal pathogen that primarily causes blastomycosis in the midwestern and northern United States and Canada. While the genes controlling sexual development have been known for a long time, the genes controlling sexual reproduction of B. dermatitidis (teleomorph, Ajellomyces dermatitidis) are unknown. We identified the mating-type (MAT) locus in the B. dermatitidis genome by comparative genomic approaches. The B. dermatitidis MAT locus resembles those of...

  15. Microfacies analysis of Green River Formation stromatolites and comparison to microbial mat experiments

    Science.gov (United States)

    Miller, S. E.; Bahniuk Rumbelsperger, A. M.; Sauvage, J. F.; Jarrett, A. J.; Petryshyn, V. A.; Corsetti, F. A.; Shapiro, R. S.

    2011-12-01

    Stromatolites were collected from the Laney Member of the Early Eocene Green River Formation near LaClede, Wyoming. LaClede stromatolites are laminated at the micron scale and form domes ~10 cm in diameter. Relatively coarse sediments (>300 μm) fill interdomal depressions, but are rare within fine-grained laminae (a grain size distribution common in Proterozoic stromatolites). On the sides of domes, laminae thin significantly and are nearly vertical. Stromatolite growth and infill sedimentation likely occurred simultaneously, as laminae are draped into interdomal areas and are rarely cut by infill. Grains longer than 200 μm are absent on the steep edges of stromatolite domes, despite the presence of >200 μm grains deposited concomitantly in interdomal depressions. To test whether microbial mats are capable of collecting relatively coarse sediments at steep angles, sedimentation experiments were conducted using cyanobacterial mats collected from Catalina Harbor, Catalina Island, California. Fine (0.125-0.250 mm), medium (0.50-1.0 mm), and coarse (1.0-2.0 mm) sediments were dropped on mats inclined at six angles (15° increments from 0-75°). Coarse grains did not adhere to mats steeper than 45°, and all fine grains were captured by mats at angles less than 45°. All grains that settled on mats were strongly bound after one day of further microbial growth. Although we cannot conclude that fine-grained stromatolites were formed by cyanobacteria, our results suggest that coarse-grained stromatolites (e.g., most modern marine stromatolites) require processes not typically observed in modern cyanobacterial mats (e.g., processes associated with algal eukaryotes, diatoms, and/or copious extracellular polymeric substances, or EPS). Similar sedimentation experiments using other microbial mats, such as those with a thicker coating of EPS or a eukaryotic component, may yield additional information on the origins of coarse- and fine-grained stromatolites. This research was

  16. Sedimentary Parameters Controlling Occurrence and Preservation of Microbial Mats in Siliciclastic Depositional Systems

    Science.gov (United States)

    Noffke, Nora; Knoll, Andrew H.

    2001-01-01

    Shallow-marine, siliciclastic depositional systems are governed by physical sedimentary processes. Mineral precipitation or penecontemporaneous cementation play minor roles. Today, coastal siliciclastic environments may be colonized by a variety of epibenthic, mat-forming cyanobacteria. Studies on microbial mats showed that they are not randomly distributed in modern tidal environments. Distribution and abundancy is mainly function of a particular sedimentary facies. Fine-grained sands composed of "clear" (translucent) quartz particles constitute preferred substrates for cyanobacteria. Mat-builders also favor sites characterized by moderate hydrodynamic flow regimes, which permit biomass enrichment and construction of mat fabrics without lethal burial of mat populations by fine sediments. A comparable facies relationship can be observed in ancient siliciclastic shelf successions from the terminal Neoproterozoic Nama Group, Namibia. Wrinkle structures that record microbial mats are present but sparsely distributed in mid- to inner shelf sandstones of the Nudaus Formation. The sporadic distribution of these structures reflects both the narrow ecological window that governs mat development and the distinctive taphonomic conditions needed to preserve the structures. These observations caution that statements about changing mat abundance across the Proterozoic-Cambrian boundary must be firmly rooted in paleoenvironmental and taphonomic analysis. Understanding the factors that influence the formation and preservation of microbial structures in siliciclastic regimes can facilitate exploration for biological signatures in Earth's oldest rocks. Moreover, insofar as these structures can be preserved on bedding surfaces and are not easily mimicked by physical processes, they constitute a set of biological markers that can be searched for on Mars by remotely controlled rovers.

  17. Long‐Range Proton Conduction across Free‐Standing Serum Albumin Mats

    OpenAIRE

    Amdursky, Nadav; Wang, Xuhua; Meredith, Paul; Bradley, Donal D. C.; Stevens, Molly M.

    2016-01-01

    Free‐standing serum‐albumin mats can transport protons over millimetre length‐scales. The results of photoinduced proton transfer and voltage‐driven proton‐conductivity measurements, together with temperature‐dependent and isotope‐effect studies, suggest that oxo‐amino‐acids of the protein serum albumin play a major role in the translocation of protons via an “over‐the‐barrier” hopping mechanism. The use of proton‐conducting protein mats opens new possibilities for bioelectronic interfaces....

  18. Structural, mechanical, and tribological properties of electrospun poly(hexamethylene adipamide) fiber mats

    OpenAIRE

    Mannarino, Matthew M.; Katsumata, Reika; Gregory C. Rutledge

    2013-01-01

    The mechanical and tribological properties of electrospun fiber mats are of paramount importance to their utility in a large number of applications. In this work, mats of electrospun fibers of poly(hexamethylene adipamide) (PA 6,6) with average fiber diameter of 238±22 nm are characterized for their crystal structure as well as their mechanical and tribological properties. Post-spin thermal annealing was used to modify the fiber morphology and crystallinity within the fibers. Morphological ch...

  19. Teaching Finite Element Method of Structural Line Elements Assisted by Open Source FreeMat

    OpenAIRE

    Waluyo Adi Siswanto; Agung Setyo Darmawan

    2012-01-01

    One of the important objectives in teaching finite element method at introductory level is to bring students into the comprehension of finite element procedures. This study presents a strategy of teaching structural line elements involving an open source computer-aided learning tool FreeMat integrated with another open source CALFEM finite element toolbox. FreeMat, which is a programming based learning tool, is used together with other higher level learning tools; Open/Libre Office Spreadshee...

  20. A novel procedure to measure the antioxidant capacity of Yerba maté extracts

    OpenAIRE

    Vanessa Graciela Hartwig; Luis Alberto Brumovsky; Raquel María Fretes; Lucila Sánchez Boado

    2012-01-01

    Yerba maté extracts have in vitro antioxidant capacity attributed to the presence of polyphenolic compounds, mainly chlorogenic acids and dicaffeoylquinic acid derivatives. DPPH is one of the most used assays to measure the antioxidant capacity of pure compounds and plant extracts. It is difficult to compare the results between studies because this assay is applied in too many different conditions by the different research groups. Thus, in order to assess the antioxidant capacity of yerba mat...

  1. Learning Geomicrobiology as a Team Using Microbial Mats, a Multidisciplinary Approach

    OpenAIRE

    Visscher, Pieter T.; Lilliam Casillas-Martinez; Carlos Rios-Velazquez

    2009-01-01

    Microbial mats are one of the best suited laminar organo-sedimentary ecosystems for students from different educational backgrounds to visualize the direct relationship between microbes and minerals. We have used tropical hypersaline microbial mats from Puerto Rico as educational tools to promote active learning of geomicrobiology introductory concepts for undergraduate students organized in multidisciplinary teams with biological and geological backgrounds. Besides field trips and independen...

  2. Bioremediation of Acetochlor in Soil and Water Systems by Cyanobacterial Mat

    OpenAIRE

    Yasser El-Nahhal; Yousef Awad; Jamal Safi

    2013-01-01

    This study investigated the bioremediation of organic pollution in soil and water systems by cyanobacterial mats collected from Wadi Gaza. Acetochlor, a model compound of herbicide, was used as a standard organic pollutant. Various concentrations of acetochlor were injected in soil and water samples pre-treated with cyanobacterial mat for several periods of time. Percentage of growth of wheat as a test plant was taken as indicator of bioremediation of acetochlor. Results showed that acetoc...

  3. Targeting accurate object extraction from an image: a comprehensive study of natural image matting.

    Science.gov (United States)

    Zhu, Qingsong; Shao, Ling; Li, Xuelong; Wang, Lei

    2015-02-01

    With the development of digital multimedia technologies, image matting has gained increasing interests from both academic and industrial communities. The purpose of image matting is to precisely extract the foreground objects with arbitrary shapes from an image or a video frame for further editing. It is generally known that image matting is inherently an ill-posed problem because we need to output three images out of only one input image. In this paper, we provide a comprehensive survey of the existing image matting algorithms and evaluate their performance. In addition to the blue screen matting, we systematically divide all existing natural image matting methods into four categories: 1) color sampling-based; 2) propagation-based; 3) combination of sampling-based and propagation-based; and 4) learning-based approaches. Sampling-based methods assume that the foreground and background colors of an unknown pixel can be explicitly estimated by examining nearby pixels. Propagation-based methods are instead based on the assumption that foreground and background colors are locally smooth. Learning-based methods treat the matting process as a supervised or semisupervised learning problem. Via the learning process, users can construct a linear or nonlinear model between the alpha mattes and the image colors using a training set to estimate the alpha matte of an unknown pixel without any assumption about the characteristics of the testing image. With three benchmark data sets, the various matting algorithms are evaluated and compared using several metrics to demonstrate the strengths and weaknesses of each method both quantitatively and qualitatively. Finally, we conclude this paper by outlining the research trends and suggesting a number of promising directions for future development. PMID:25423658

  4. Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments

    DEFF Research Database (Denmark)

    Klatt, Christian G.; Inskeep, William P.; Herrgard, Markus;

    2013-01-01

    Six phototrophic microbial mat communities from different geothermal springs (YNP) were studied using metagenome sequencing and geochemical analyses. The primary goals of this work were to determine differences in community composition of high-temperature phototrophic mats distributed across...... the Yellowstone geothermal ecosystem, and to identify metabolic attributes of predominant organisms present in these communities that may correlate with environmental attributes important in niche differentiation. Random shotgun metagenome sequences from six phototrophic communities (average 53Mbp/site) were...

  5. Microbial Mats on the Orkney Islands Revisited: Microenvironment and Microbial Community Composition

    DEFF Research Database (Denmark)

    Wieland, A.; Kühl, M.; McGowan, L.;

    2003-01-01

    The microenvironment and community composition of microbial mats developing on beaches in Scapa Flow (Orkney Islands) were investigated. Analysis of characteristic biomarkers (major fatty acids, hydrocarbons, alcohols, and alkenones) revealed the presence of different groups of bacteria and...... from CLSM (confocal laser scanning microscopy) analysis. Spectral scalar irradiance measurements with fiber-optic microprobes indicated a pronounced heterogeneity concerning zonation and density of mainly anoxygenic phototrophs in Swanbister Bay mats. By microsensor and T-RFLP (terminal restriction...

  6. Engineering and Scientific Applications: Using MatLab(Registered Trademark) for Data Processing and Visualization

    Science.gov (United States)

    Sen, Syamal K.; Shaykhian, Gholam Ali

    2011-01-01

    MatLab(TradeMark)(MATrix LABoratory) is a numerical computation and simulation tool that is used by thousands Scientists and Engineers in many countries. MatLab does purely numerical calculations, which can be used as a glorified calculator or interpreter programming language; its real strength is in matrix manipulations. Computer algebra functionalities are achieved within the MatLab environment using "symbolic" toolbox. This feature is similar to computer algebra programs, provided by Maple or Mathematica to calculate with mathematical equations using symbolic operations. MatLab in its interpreter programming language form (command interface) is similar with well known programming languages such as C/C++, support data structures and cell arrays to define classes in object oriented programming. As such, MatLab is equipped with most of the essential constructs of a higher programming language. MatLab is packaged with an editor and debugging functionality useful to perform analysis of large MatLab programs and find errors. We believe there are many ways to approach real-world problems; prescribed methods to ensure foregoing solutions are incorporated in design and analysis of data processing and visualization can benefit engineers and scientist in gaining wider insight in actual implementation of their perspective experiments. This presentation will focus on data processing and visualizations aspects of engineering and scientific applications. Specifically, it will discuss methods and techniques to perform intermediate-level data processing covering engineering and scientific problems. MatLab programming techniques including reading various data files formats to produce customized publication-quality graphics, importing engineering and/or scientific data, organizing data in tabular format, exporting data to be used by other software programs such as Microsoft Excel, data presentation and visualization will be discussed.

  7. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

    Directory of Open Access Journals (Sweden)

    StephenRLindemann

    2014-04-01

    Full Text Available Microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, but the diversity and complexity of natural systems and their intractability to in situ manipulation make it challenging to elucidate the principles governing these interactions. The study of assembling phototrophic biofilm communities provides a robust means to identify such interactions and evaluate their contributions to the recruitment and maintenance of phylogenetic and functional diversity over time. To examine primary succession in phototrophic communities, we isolated two unicyanobacterial consortia from the microbial mat in Hot Lake, Washington, characterizing the membership and metabolic function of each consortium. We then analyzed the spatial structures and quantified the community compositions of their assembling biofilms. The consortia retained the same suite of heterotrophic species, identified as abundant members of the mat and assigned to Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes. Autotroph growth rates dominated early in assembly, yielding to increasing heterotroph growth rates late in succession. The two consortia exhibited similar assembly patterns, with increasing relative abundances of members from Bacteroidetes and Alphaproteobacteria concurrent with decreasing relative abundances of those from Gammaproteobacteria. Despite these similarities at higher taxonomic levels, the relative abundances of individual heterotrophic species were substantially different in the developing consortial biofilms. This suggests that, although similar niches are created by the cyanobacterial metabolisms, the resulting webs of autotroph-heterotroph and heterotroph-heterotroph interactions are specific to each primary producer. The relative simplicity and tractability of the Hot Lake unicyanobacterial consortia make them useful model systems for deciphering interspecies interactions and assembly principles relevant to natural

  8. Fabrication and Characterization of Electrospun Polycaprolactone Blended with Chitosan-Gelatin Complex Nanofibrous Mats

    Directory of Open Access Journals (Sweden)

    Yongfang Qian

    2014-01-01

    Full Text Available Design and fabrication of nanofibrous scaffolds should mimic the native extracellular matrix. This study is aimed at investigating electrospinning of polycaprolactone (PCL blended with chitosan-gelatin complex. The morphologies were observed from scanning electron microscope. As-spun blended mats had thinner fibers than pure PCL. X-ray diffraction was used to analyze the degree of crystallinity. The intensity at two peaks at 2θ of 21° and 23.5° gradually decreased with the percentage of chitosan-gelatin complex increasing. Moreover, incorporation of the complex could obviously improve the hydrophilicity of as-spun blended mats. Mechanical properties of as-spun nanofibrous mats were also tested. The elongation at break of fibrous mats increased with the PCL content increasing and the ultimate tensile strength varied with different weight ratios. The as-spun mats had higher tensile strength when the weight ratio of PCL to CS-Gel was 75/25 compared to pure PCL. Both as-spun PCL scaffolds and PCL/CS-Gel scaffolds supported the proliferation of porcine iliac endothelial cells, and PCL/CS-Gel had better cell viability than pure PCL. Therefore, electrospun PCL/Chitosan-gelatin nanofibrous mats with weight ratio of 75/25 have better hydrophilicity mechanical properties, and cell proliferation and thus would be a promising candidate for tissue engineering scaffolds.

  9. Unraveling the stratification of an iron-oxidizing microbial mat by metatranscriptomics.

    Directory of Open Access Journals (Sweden)

    Achim Quaiser

    Full Text Available A metatranscriptomic approach was used to study community gene expression in a naturally occurring iron-rich microbial mat. Total microbial community RNA was reversely transcribed and sequenced by pyrosequencing. Characterization of expressed gene sequences provided accurate and detailed information of the composition of the transcriptionally active community and revealed phylogenetic and functional stratifications within the mat. Comparison of 16S rRNA reads and delineation of OTUs showed significantly lower values of metatranscriptomic-based richness and diversity in the upper parts of the mat than in the deeper regions. Taxonomic affiliation of rRNA sequences and mRNA genome recruitments indicated that iron-oxidizing bacteria affiliated to the genus Leptothrix, dominated the community in the upper layers of the mat. Surprisingly, type I methanotrophs contributed to the majority of the sequences in the deep layers of the mat. Analysis of mRNA expression patterns showed that genes encoding the three subunits of the particulate methane monooxygenase (pmoCAB were the most highly expressed in our dataset. These results provide strong hints that iron-oxidation and methane-oxidation occur simultaneously in microbial mats and that both groups of microorganisms are major players in the functioning of this ecosystem.

  10. Protein and Bacterial Antifouling Behavior of Melt-Coextruded Nanofiber Mats.

    Science.gov (United States)

    Kim, Si-Eun; Zhang, Cong; Advincula, Abigail A; Baer, Eric; Pokorski, Jonathan K

    2016-04-13

    Antifouling surfaces are important for biomedical devices to prevent secondary infections and mitigate the effects of the foreign body response. Herein, we describe melt-coextruded poly(ε-caprolactone) (PCL) nanofiber mats grafted with antifouling polymers. Nonwoven PCL fiber mats are produced using a multilayered melt coextrusion process followed by high-pressure hydroentanglement to yield porous patches. The resulting fiber mats show submicrometer cross-sectional fiber dimensions and yield pore sizes that were nearly uniform, with a mean pore size of 1.6 ± 0.9 μm. Several antifouling polymers, including hydrophilic, zwitterionic, and amphipathic molecules, are grafted to the surface of the mats using a two-step procedure that includes photochemistry followed by the copper-catalyzed azide-alkyne cycloaddition reaction. Fiber mats are evaluated using separate adsorption tests for serum proteins and E. coli. The results indicate that poly(oligo(ethylene glycol) methyl ether methacrylate)-co-(trifluoroethyl methacrylate) (poly(OEGMEMA-co-TFEMA)) grafted mats exhibit approximately 85% less protein adhesion and 97% less E. coli adsorption when compared to unmodified PCL fibermats. In dynamic antifouling testing, the amphiphilic fluorous polymer surface shows the highest flux and highest rejection value of foulants. The work presented within has implications on the high-throughput production of antifouling microporous patches for medical applications. PMID:27043205

  11. Using MatContM in the study of a nonlinear map in economics

    Science.gov (United States)

    Neirynck, Niels; Al-Hdaibat, Bashir; Govaerts, Willy; Kuznetsov, Yuri A.; Meijer, Hil G. E.

    2016-02-01

    MatContM is a MATLAB interactive toolbox for the numerical study of iterated smooth maps, their Lyapunov exponents, fixed points, and periodic, homoclinic and heteroclinic orbits as well as their stable and unstable invariant manifolds. The bifurcation analysis is based on continuation methods, tracing out solution manifolds of various types of objects while some of the parameters of the map vary. In particular, MatContM computes codimension 1 bifurcation curves of cycles and supports the computation of the normal form coefficients of their codimension two bifurcations, and allows branch switching from codimension 2 points to secondary curves. MatContM builds on an earlier command-line MATLAB package CL MatContM but provides new computational routines and functionalities, as well as a graphical user interface, enabling interactive control of all computations, data handling and archiving. We apply MatContM in our study of the monopoly model of T. Puu with cubic price and quadratic marginal cost functions. Using MatContM, we analyze the fixed points and their stability and we compute branches of solutions of period 5, 10, 13 17. The chaotic and periodic behavior of the monopoly model is further analyzed by computing the largest Lyapunov exponents.

  12. Sequester of metals and mineralization of organic contaminants with microbial mats

    International Nuclear Information System (INIS)

    Several recalcitrant organic contaminants are completely mineralized to simple products by microbial mats. Contaminants include chlordane, PCB, TNT, petroleum distillates, BM compounds and TCE in a mixed contaminant solution containing Zn. Degradation rates are relatively rapid under both dark and light conditions. In addition to complete degradation of organic materials, mats have been used to reduce selenate to elemental selenium, remove Pb, Cd, Cu, Zn, Co, Cr, Fe and Mn from water and sequester uranium (U238) at a rate of 3.19 mg/m2/h. Results of three pilot projects, including field pond treatment of mine drainage and bioreactor treatment of BTEX compounds will be reported. Microbial mats are natural heterotrophic and autotrophic communities dominated by cyanobacteria (blue-green algae). They are self-organized laminated structures annealed fightly together by slimy secretions from various microbial components. The surface slime of the mats effectively immobilizes the ecosystem to a variety of substrates, thereby stabilizing the most efficient internal microbial structure. Cyanobacteria mats are generated for bioremediation applications by enriching a water surface with ensiled grass clippings together with mat inocula developed in the laboratory

  13. MatProps: Material Properties Database and Associated Access Library

    Energy Technology Data Exchange (ETDEWEB)

    Durrenberger, J K; Becker, R C; Goto, D M; Neely, J R; Wallin, B K

    2007-08-13

    Coefficients for analytic constitutive and equation of state models (EOS), which are used by many hydro codes at LLNL, are currently stored in a legacy material database (Steinberg, UCRL-MA-106349). Parameters for numerous materials are available through this database, and include Steinberg-Guinan and Steinberg-Lund constitutive models for metals, JWL equations of state for high explosives, and Mie-Gruniesen equations of state for metals. These constitutive models are used in most of the simulations done by ASC codes today at Livermore. Analytic EOSs are also still used, but have been superseded in many cases by tabular representations in LEOS (http://leos.llnl.gov). Numerous advanced constitutive models have been developed and implemented into ASC codes over the past 20 years. These newer models have more physics and better representations of material strength properties than their predecessors, and therefore more model coefficients. However, a material database of these coefficients is not readily available. Therefore incorporating these coefficients with those of the legacy models into a portable database that could be shared amongst codes would be most welcome. The goal of this paper is to describe the MatProp effort at LLNL to create such a database and associated access library that could be used by codes throughout the DOE complex and beyond. We have written an initial version of the MatProp database and access library and our DOE/ASC code ALE3D (Nichols et. al., UCRL-MA-152204) is able to import information from the database. The database, a link to which exists on the Sourceforge server at LLNL, contains coefficients for many materials and models (see Appendix), and includes material parameters in the following categories--flow stress, shear modulus, strength, damage, and equation of state. Future versions of the Matprop database and access library will include the ability to read and write material descriptions that can be exchanged between codes. It will

  14. Active ingredient-containing chitosan/polycaprolactone nonwoven mats: Characterizations and their functional assays

    Energy Technology Data Exchange (ETDEWEB)

    Bai, Meng-Yi, E-mail: mybai@mail.ntust.edu.tw [Graduate Institute of Biomedical Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan, ROC (China); Adjunct appointment to the Department of Biomedical Engineering, National Defense Medical Center, Taipei 114, Taiwan, ROC (China); Chou, Tz-Chong, E-mail: tcchou@ms5.hinet.net [Department of Biomedical Engineering, National Defense Medical Center, Taipei 114, Taiwan, ROC (China); Tsai, Jie-Chang; Yang, Hui-Ching [Graduate Institute of Biomedical Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan, ROC (China)

    2013-01-01

    This study demonstrates a facile method developed to generate a chitosan/polycaprolactone (CS/PCL) nonwoven mat. All nonwoven mats are composed of microfibers with an average diameter of 2.51 {+-} 0.69 {mu}m. The X-ray photoelectron spectroscopy data indicate that positively charged nitrogen was generated on the surface of the mats after undergoing CS coating. By using a non-contacting electrostatic voltmeter, we determined that the nonwoven mats exhibited a positive potential and the charge density of the CS/PCL nonwoven mat was in proportion to the thickness of the CS overlayer. Moreover, platelet aggregation and anti-bacterial ability were enhanced by the CS/PCL nonwoven mat as compared to that of PCL nonwoven mat alone. The enhancements of the CS/PCL nonwoven mat on platelet aggregation are further promoted by incorporating a 1 mM calcium ion in its CS overlayer. We also find that the addition of tea tree oil in the CS overlayer significantly inhibited LPS-induced nitrite formation in Raw 264.7 macrophages. In conclusion, our CS/PCL nonwoven mat possesses pharmacological effects including an increase of platelet aggregation, anti-bacterial, anti-adhesive, and anti-inflammatory activities. The performance of this CS/PCL nonwoven mat can be further promoted by incorporating active compounds to exert therapeutic effects in wound healing. Highlights: Black-Right-Pointing-Pointer We develop a facile method to generate active ingredient-containing CS/PCLNM. Black-Right-Pointing-Pointer Our CS/PCLNM possesses superior mechanical strength, compared to CS-blended PCL nanofibers. Black-Right-Pointing-Pointer We prove that our prepared CS/PCLNM possesses several pharmacological properties Black-Right-Pointing-Pointer The functional performances of CS/PCLNM are enhanced by incorporation of active compounds. Black-Right-Pointing-Pointer Incorporation of 1 mM of calcium ions or 100 {mu}L of TTO into the CS overlayer of CS/PCLNM is the optimum dose.

  15. Active ingredient-containing chitosan/polycaprolactone nonwoven mats: Characterizations and their functional assays

    International Nuclear Information System (INIS)

    This study demonstrates a facile method developed to generate a chitosan/polycaprolactone (CS/PCL) nonwoven mat. All nonwoven mats are composed of microfibers with an average diameter of 2.51 ± 0.69 μm. The X-ray photoelectron spectroscopy data indicate that positively charged nitrogen was generated on the surface of the mats after undergoing CS coating. By using a non-contacting electrostatic voltmeter, we determined that the nonwoven mats exhibited a positive potential and the charge density of the CS/PCL nonwoven mat was in proportion to the thickness of the CS overlayer. Moreover, platelet aggregation and anti-bacterial ability were enhanced by the CS/PCL nonwoven mat as compared to that of PCL nonwoven mat alone. The enhancements of the CS/PCL nonwoven mat on platelet aggregation are further promoted by incorporating a 1 mM calcium ion in its CS overlayer. We also find that the addition of tea tree oil in the CS overlayer significantly inhibited LPS-induced nitrite formation in Raw 264.7 macrophages. In conclusion, our CS/PCL nonwoven mat possesses pharmacological effects including an increase of platelet aggregation, anti-bacterial, anti-adhesive, and anti-inflammatory activities. The performance of this CS/PCL nonwoven mat can be further promoted by incorporating active compounds to exert therapeutic effects in wound healing. Highlights: ► We develop a facile method to generate active ingredient-containing CS/PCLNM. ► Our CS/PCLNM possesses superior mechanical strength, compared to CS-blended PCL nanofibers. ► We prove that our prepared CS/PCLNM possesses several pharmacological properties ► The functional performances of CS/PCLNM are enhanced by incorporation of active compounds. ► Incorporation of 1 mM of calcium ions or 100 μL of TTO into the CS overlayer of CS/PCLNM is the optimum dose.

  16. Prospects for discriminating Zingiberaceae species in India using DNA barcodes

    Institute of Scientific and Technical Information of China (English)

    Meenakshi Ramaswamy Vinitha; Unnikrishnan Suresh Kumar; Kizhakkethil Aishwarya; Mamiyil Sabu; George Thomas

    2014-01-01

    We evaluated nine plastid (matK, rbcL, rpoC1, rpoB, rpl36-rps8, ndhJ, trnL-F, trnH-psbA, accD) and two nuclear (ITS and ITS2) barcode loci in family Zingiberaceae by analyzing 60 accessions of 20 species belonging to seven genera from India. Bidirectional sequences were recovered for every plastid locus by direct sequencing of polymerase chain reaction (PCR) amplicons in al the accessions tested. However, only 35 (58%) and 40 accessions (66%) yielded ITS and ITS2 sequences, respectively, by direct sequencing. In different bioinformatics analyses, matK and rbcL consistently resolved 15 species (75%) into monophyletic groups and five species into two para-phyletic groups. The 173 ITS sequences, including 138 cloned sequences from 23 accessions, discriminated only 12 species (60%), and the remaining species were entered into three paraphyletic groups. Phylogenetic and genealogic analyses of plastid and ITS sequences imply the possible occurrence of natural hybridizations in the evolutionary past in giving rise to species paraphyly and intragenomic ITS heterogeneity in the species tested. The results support using matK and rbcL loci for barcoding Zingiberaceae members and highlight the poor utility of ITS and the highly regarded ITS2 in barcoding this family, and also caution against proposing ITS loci for barcoding taxa based on limited sampling.

  17. Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake.

    Science.gov (United States)

    Jungblut, Anne D; Hawes, Ian; Mackey, Tyler J; Krusor, Megan; Doran, Peter T; Sumner, Dawn Y; Eisen, Jonathan A; Hillman, Colin; Goroncy, Alexander K

    2016-01-01

    Lake Fryxell is a perennially ice-covered lake in the McMurdo Dry Valleys, Antarctica, with a sharp oxycline in a water column that is density stabilized by a gradient in salt concentration. Dissolved oxygen falls from 20 mg liter(-1) to undetectable over one vertical meter from 8.9- to 9.9-m depth. We provide the first description of the benthic mat community that falls within this oxygen gradient on the sloping floor of the lake, using a combination of micro- and macroscopic morphological descriptions, pigment analysis, and 16S rRNA gene bacterial community analysis. Our work focused on three macroscopic mat morphologies that were associated with different parts of the oxygen gradient: (i) "cuspate pinnacles" in the upper hyperoxic zone, which displayed complex topography and were dominated by phycoerythrin-rich cyanobacteria attributable to the genus Leptolyngbya and a diverse but sparse assemblage of pennate diatoms; (ii) a less topographically complex "ridge-pit" mat located immediately above the oxic-anoxic transition containing Leptolyngbya and an increasing abundance of diatoms; and (iii) flat prostrate mats in the upper anoxic zone, dominated by a green cyanobacterium phylogenetically identified as Phormidium pseudopriestleyi and a single diatom, Diadesmis contenta. Zonation of bacteria was by lake depth and by depth into individual mats. Deeper mats had higher abundances of bacteriochlorophylls and anoxygenic phototrophs, including Chlorobi and Chloroflexi. This suggests that microbial communities form assemblages specific to niche-like locations. Mat morphologies, underpinned by cyanobacterial and diatom composition, are the result of local habitat conditions likely defined by irradiance and oxygen and sulfide concentrations. PMID:26567300

  18. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    Directory of Open Access Journals (Sweden)

    Jacob P. Beam

    2016-02-01

    Full Text Available Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA, and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III-oxide mat ecosystems. Spatial and temporal changes in Fe(III-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3 - 3.5; temperature = 68 - 75 °C in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4 - 40 d, and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 d, and reached steady-state levels within 14 - 30 d, corresponding to visible Fe(III-oxide accretion. Heterotrophic archaea colonized near 30 d, and emerged as the dominant functional guild after 70 d and in mature Fe(III-oxide mats (1 - 2 cm thick. First-order rate constants of Fe(III-oxide accretion ranged from 0.046 - 0.05 d-1, and in situ microelectrode measurements showed that the oxidation of Fe(II is limited by the diffusion of O2 into the Fe(III-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III-oxide mats are useful for understanding other Fe(II-oxidizing systems.

  19. Potential of Winkler type platform models for SSI problems considering flexibility of base mat

    International Nuclear Information System (INIS)

    Highlights: • Base mat's flexibility affects different seismic response parameters in different ways. • The most sensitive are the internal seismic response forces in the base mat itself. • Vertical response accelerations in the centers of the rooms are sensitive too. • Shaped Winkler model generally gives better results than the conventional flat one. • Even shaped Winkler model cannot reproduce the response in two sensitive formats. -- Abstract: Linear soil-structure interaction (SSI) analysis seems to be well understood nowadays and can be performed, for example, by convenient combined asymptotic method (CAM). However, CAM is asymptotically accurate for rigid base mats only – this is a limitation. So, the additional research is needed to find out (a) what is the impact of the base mat's flexibility to the seismic response; (b) how can one account for this impact using the conventional tools. In the first part of the paper a sample “wave” solution is obtained in the frequency domain using SASSI2000 code, without CAM at all. Different formats of the seismic response (e.g., in-structure response spectra, soil-structure interaction forces, in-structure internal forces) have proved to have different sensitivity to the base mat's flexibility. In the second part of the paper this wave solution is a benchmark for the different “platform” models with “soil” springs and dashpots distributed over the base mat (this is a broad definition of Winkler type model). Different shapes of distribution, starting from the conventional Winkler's flat shape and up to the “optimal” shape, are compared to each other in the second part of the paper. It is shown that even the most advanced “shaped” models of the Winkler type are limited in their ability to reproduce seismic response in the most sensitive format – the internal forces in the mat. This is the result of (a) local nature of Winkler's model, and (b) frequency independence of its’ parameters

  20. The Epsomitic Phototrophic Microbial Mat of Hot Lake, Washington. Community Structural Responses to Seasonal Cycling

    Energy Technology Data Exchange (ETDEWEB)

    Lindemann, Stephen R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Moran, James J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Stegen, James C. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Renslow, Ryan S. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Hutchison, Janine R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Cole, Jessica K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Dohnalkova, Alice [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Tremblay, Julien [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Singh, Kanwar [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Malfatti, Stephanie [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Chen, Feng [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tringe, Susannah [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Beyenal, Haluk [Washington State Univ., Pullman, WA (United States); Fredrickson, Jim K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2013-11-13

    Phototrophic microbial mats are compact ecosystems composed of highly interactive organisms in which energy and element cycling take place over millimeter-to-centimeter-scale distances. Although microbial mats are common in hypersaline environments, they have not been extensively characterized in systems dominated by divalent ions. Hot Lake is a meromictic, epsomitic lake that occupies a small, endorheic basin in north-central Washington. The lake harbors a benthic, phototrophic mat that assembles each spring, disassembles each fall, and is subject to greater than tenfold variation in salinity (primarily Mg2+ and SO2-4) and irradiation over the annual cycle. We examined spatiotemporal variation in the mat community at five time points throughout the annual cycle with respect to prevailing physicochemical parameters by amplicon sequencing of the V4 region of the 16S rRNA gene coupled to near-full-length 16S RNA clone sequences. The composition of these microbial communities was relatively stable over the seasonal cycle and included dominant populations of Cyanobacteria, primarily a group IV cyanobacterium (Leptolyngbya), and Alphaproteobacteria (specifically, members of Rhodobacteraceae and Geminicoccus). Members of Gammaproteobacteria (e.g., Thioalkalivibrio and Halochromatium) and Deltaproteobacteria (e.g., Desulfofustis) that are likely to be involved in sulfur cycling peaked in summer and declined significantly by mid-fall, mirroring larger trends in mat community richness and evenness. Phylogenetic turnover analysis of abundant phylotypes employing environmental metadata suggests that seasonal shifts in light variability exert a dominant influence on the composition of Hot Lake microbial mat communities. The seasonal development and organization of these structured microbial mats provide opportunities for analysis of the temporal and physical dynamics that feed back to community function.

  1. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

    Science.gov (United States)

    Beam, Jacob P; Bernstein, Hans C; Jay, Zackary J; Kozubal, Mark A; Jennings, Ryan deM; Tringe, Susannah G; Inskeep, William P

    2016-01-01

    Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA), and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III)-oxide mat ecosystems. Spatial and temporal changes in Fe(III)-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3-3.5; temperature = 68-75°C) in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4-40 days), and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 days, and reached steady-state levels within 14-30 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized near 30 days, and emerged as the dominant functional guild after 70 days and in mature Fe(III)-oxide mats (1-2 cm thick). First-order rate constants of Fe(III)-oxide accretion ranged from 0.046 to 0.05 day(-1), and in situ microelectrode measurements showed that the oxidation of Fe(II) is limited by the diffusion of O2 into the Fe(III)-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III)-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III)-oxide mats are also useful for understanding other Fe(II)-oxidizing systems. PMID:26913020

  2. UV B-induced vertical migrations of cyanobacteria in a microbial mat

    International Nuclear Information System (INIS)

    Exposure to moderate doses of UV B (0.35 to 0.79 W m-2 s-1 or 0.98 to 2.2 μmol of photons m-2 s-1 at 310 nm) caused the surface layers of microbial mats from Solar Lake, Sinai, Egypt, to become visibly lighter green. Concurrent with the color change were rapid and dramatic reductions in gross photosynthesis and in the resultant high porewater oxygen concentrations in the surface layers of the mats. The depths at which both maximum gross photosynthesis and maximum oxygen concentrations occurred were displaced downward. In contrast, gross photosynthesis in the deeper layers of the mats increased in response to UV B incident upon the surface. The cessation of exposure to UV B partially reversed all of these changes. Taken together, these responses suggest that photoautotrophic members of the mat community, most likely the dominant cyanobacterium Microcoleus chthonoplastes, were migrating in response to the added UV B. The migration phenomenon was also observed in response to increases in visible radiation and UV A, but UV B was ca. 100-fold more effective than visible radiation and ca. 20-fold more effective than UV A in provoking the response. Migrating microorganisms within this mat are apparently able to sense UV B directly and respond behaviorally to limit their exposure to UV. Because of strong vertical gradients of light and dissolved substances in microbial mats, the migration and the resultant vertical redistribution of photosynthetic activity have important consequences for both the photobiology of the cyanobacteria and the net primary productivity of the mat ecosystem

  3. The evolutionary trajectory of the mating-type (mat genes in Neurospora relates to reproductive behavior of taxa

    Directory of Open Access Journals (Sweden)

    Johannesson Hanna

    2008-04-01

    Full Text Available Abstract Background Comparative sequencing studies among a wide range of taxonomic groups, including fungi, have led to the discovery that reproductive genes evolve more rapidly than other genes. However, for fungal reproductive genes the question has remained whether the rapid evolution is a result of stochastic or deterministic processes. The mating-type (mat genes constitute the master regulators of sexual reproduction in filamentous ascomycetes and here we present a study of the molecular evolution of the four mat-genes (mat a-1, mat A-1, mat A-2 and mat A-3 of 20 Neurospora taxa. Results We estimated nonsynonymous and synonymous substitution rates of genes to infer their evolutionary rate, and confirmed that the mat-genes evolve rapidly. Furthermore, the evolutionary trajectories are related to the reproductive modes of the taxa; likelihood methods revealed that positive selection acting on specific codons drives the diversity in heterothallic taxa, while among homothallic taxa the rapid evolution is due to a lack of selective constraint. The latter finding is supported by presence of stop codons and frame shift mutations disrupting the open reading frames of mat a-1, mat A-2 and mat A-3 in homothallic taxa. Lower selective constraints of mat-genes was found among homothallic than heterothallic taxa, and comparisons with non-reproductive genes argue that this disparity is not a nonspecific, genome-wide phenomenon. Conclusion Our data show that the mat-genes evolve rapidly in Neurospora. The rapid divergence is due to either adaptive evolution or lack of selective constraints, depending on the reproductive mode of the taxa. This is the first instance of positive selection acting on reproductive genes in the fungal kingdom, and illustrates how the evolutionary trajectory of reproductive genes can change after a switch in reproductive behaviour of an organism.

  4. Consumption of Methane and CO_2 by Methanotrophic Microbial Mats from Gas Seeps of the Anoxic Black Sea

    OpenAIRE

    Treude, Tina; Orphan, Victoria; Knittel, Katrin; Gieseke, Armin; House, Christopher H.; Boetius, Antje

    2007-01-01

    The deep anoxic shelf of the northwestern Black Sea has numerous gas seeps, which are populated by methanotrophic microbial mats in and above the seafloor. Above the seafloor, the mats can form tall reef-like structures composed of porous carbonate and microbial biomass. Here, we investigated the spatial patterns of CH_4 and CO_2 assimilation in relation to the distribution of ANME groups and their associated bacteria in mat samples obtained from the surface of a large reef structure. A combi...

  5. Application of Indigenous Folk Wisdom Concerning the Management of Commercial Reed-Mat Production in Maha Sarakham Province, Thailand

    OpenAIRE

    Songkoon Chantachon

    2013-01-01

    A dying skill in a thriving economy, reed-mat production is fast losing its identity as a traditional Thai handicraft. This qualitative research analyzes how local wisdom is used in the management of commercial reed-mat production in Maha Sarakham Province, Thailand. Once-distinctive Thai reed-mats are now being mass-produced to cope with global demand, killing the economic viability of hand produced merchandise. This study identifies problems with materials, equipment, production process, pr...

  6. Biogeochemistry of hypersaline microbial mats illustrates the dynamics of modern microbial ecosystems and the early evolution of the biosphere

    Science.gov (United States)

    Des Marais, David J.

    2003-01-01

    Photosynthetic microbial mats are remarkably complete self-sustaining ecosystems at the millimeter scale, yet they have substantially affected environmental processes on a planetary scale. These mats may be direct descendents of the most ancient biological communities in which even oxygenic photosynthesis might have developed. Photosynthetic mats are excellent natural laboratories to help us to learn how microbial populations associate to control dynamic biogeochemical gradients.

  7. Russian Army Mat as a Code System Controlling Behaviour in the Russian army

    Directory of Open Access Journals (Sweden)

    Vadim Mikhailin

    2004-09-01

    Full Text Available This text is to be a shortened, restructured and based on somewhat another factological foundation version of my article “Russkii mat kak muzhskoi obstsennyi kod: problema proiskhozhdeniia i evoliutsiia statusa”, published in # 43 of Novoe Literaturnoe Obozrenie. Tracing the genesis of mat to the specific modes of behaviour, peculiar to the archaic male warrior bands, I’m going to show that the military milieu (and some other, structurally close to it social strata, has always been – and remain – absolutely adequate for the mat speaking. Moreover, mat has always carried on within these strata rather specific function connected with creating of one’s identity as a military, and its use offers various and sometimes the only possible means of impact at one’s equal or subordinate (or even superior. As a matter of fact, mat is a basis for a whole code system, controlling different military behaviour practices. The problems of the freshers’ adaptation and of the national specificities in the late Soviet and modern Russian army are to be considered with special respect.

  8. Jet Shaping Nanofibers and the Collection of Nanofiber Mats in Electrospinning

    Institute of Scientific and Technical Information of China (English)

    Xinwei WANG; Jin CAO; Zuming HU; Wanlian PAN; Zhaofeng LIU

    2006-01-01

    Electrospinning is an effective way to produce nanofibers. Theconcentration or the corresponding viscosity of the spin solution is one of the most important variables to control the fiber morphology in electrospinning. Jet shaping nanofibers might be divided in two operating modes for different solution viscosity: split thinning and single thinning. From the analysis of jet single thinning, an equation to calculate the velocity of nanofibers depositing on the collector was educed and it was found that the velocity range was very different from the reported result. For the electrospun mats obtained from low solution concentration, the split is observed by scanning electron microscopy (SEM) images. On the other hand, the beads formation in the nanofiber mats can be explained well by jet splitting. The arrangement of nanofibers in the mats is related to the methods of collection, and the cylinder collector gets more ordered mats. This result is proved by so-called break strengths testing and SEM images of the mats obtained from different methods of collection.

  9. Rapid Reactivation of Cyanobacterial Photosynthesis and Migration upon Rehydration of Desiccated Marine Microbial Mats

    KAUST Repository

    Chennu, Arjun

    2015-12-24

    Desiccated cyanobacterial mats are the dominant biological feature in the Earth’s arid zones. While the response of desiccated cyanobacteria to rehydration is well-documented for terrestrial systems, information about the response in marine systems is lacking. We used high temporal resolution hyperspectral imaging, liquid chromatography, pulse-amplitude fluorometry, oxygen microsensors, and confocal laser microscopy to study this response in a desiccated microbial mat from Exmouth Gulf, Australia. During the initial 15 min after rehydration chlorophyll a concentrations increased 2–5 fold and cyanobacterial photosynthesis was re-established. Although the mechanism behind this rapid increase of chlorophyll a remains unknown, we hypothesize that it involves resynthesis from a precursor stored in desiccated cyanobacteria. The subsequent phase (15 min–48 h) involved migration of the reactivated cyanobacteria toward the mat surface, which led, together with a gradual increase in chlorophyll a, to a further increase in photosynthesis. We conclude that the response involving an increase in chlorophyll a and recovery of photosynthetic activity within minutes after rehydration is common for cyanobacteria from desiccated mats of both terrestrial and marine origin. However, the response of upward migration and its triggering factor appear to be mat-specific and likely linked to other factors.

  10. Arc_Mat: a Matlab-based spatial data analysis toolbox

    Science.gov (United States)

    Liu, Xingjian; Lesage, James

    2010-03-01

    This article presents an overview of Arc_Mat, a Matlab-based spatial data analysis software package whose source code has been placed in the public domain. An earlier version of the Arc_Mat toolbox was developed to extract map polygon and database information from ESRI shapefiles and provide high quality mapping in the Matlab software environment. We discuss revisions to the toolbox that: utilize enhanced computing and graphing capabilities of more recent versions of Matlab, restructure the toolbox with object-oriented programming features, and provide more comprehensive functions for spatial data analysis. The Arc_Mat toolbox functionality includes basic choropleth mapping; exploratory spatial data analysis that provides exploratory views of spatial data through various graphs, for example, histogram, Moran scatterplot, three-dimensional scatterplot, density distribution plot, and parallel coordinate plots; and more formal spatial data modeling that draws on the extensive Spatial Econometrics Toolbox functions. A brief review of the design aspects of the revised Arc_Mat is described, and we provide some illustrative examples that highlight representative uses of the toolbox. Finally, we discuss programming with and customizing the Arc_Mat toolbox functionalities.

  11. Bacterial Diversity in Microbial Mats and Sediments from the Atacama Desert.

    Science.gov (United States)

    Rasuk, Maria Cecilia; Fernández, Ana Beatriz; Kurth, Daniel; Contreras, Manuel; Novoa, Fernando; Poiré, Daniel; Farías, María Eugenia

    2016-01-01

    The Atacama Desert has extreme environmental conditions that allow the development of unique microbial communities. The present paper reports the bacterial diversity of microbial mats and sediments and its mineralogical components. Some physicochemical conditions of the water surrounding these ecosystems have also been studied trying to determine their influence on the diversity of these communities. In that way, mats and sediments distributed among different hypersaline lakes located in salt flats of the Atacama Desert were subjected to massive parallel sequencing of the V4 region of the 16S rRNA genes of Bacteria. A higher diversity in sediment than in mat samples have been found. Lakes that harbor microbial mats have higher salinity than lakes where mats are absent. Proteobacteria and/or Bacteroidetes are the major phyla represented in all samples. An interesting item is the finding of a low proportion or absence of Cyanobacteria sequences in the ecosystems studied, suggesting the possibility that other groups may be playing an essential role as primary producers in these extreme environments. Additionally, the large proportion of 16S rRNA gene sequences that could not be classified at the level of phylum indicates potential new phyla present in these ecosystems. PMID:26224164

  12. Investigation of Water Permeability of Thermoplastic Polyurethane (TPU Electrospun Porous Mat

    Directory of Open Access Journals (Sweden)

    Aušra BANUŠKEVIČIŪTĖ

    2013-05-01

    Full Text Available The aim of this study is to form thermoplastic polyurethane (TPU mats by electrospinning process on knitted and woven materials, and to determine the water permeability of textile materials before and after mat has been formed on them. TPU granules were dissolved in a mixture of dimethylformamide (DMF and tetrahydrofuran (THF (1:1, w/w solvents. TPU solution of 3 wt.% concentration was prepared. TPU mats were electrospun by "NanospiderTM“, the applied voltage was 65 kV. Selected textile materials were knitted and woven cotton fabrics. Textile materials were covered by 1, 2, 3 and 4 layers of TPU mats. For the experiment four textile support materials such as fleece knitted fabric and three twill weave cotton fabrics were chosen. The water permeability was determined by a water drop method measuring the area of water drop. It was determined that the greater the number of layers on the textile materials with TPU electrospun fiber the thicker will be the mat. The greater number of layers decreases the expansion of water drop area on the textile material.DOI: http://dx.doi.org/10.5755/j01.ms.19.2.4435

  13. Rapid reactivation of cyanobacterial photosynthesis and migration upon rehydration of desiccated marine microbial mats

    Directory of Open Access Journals (Sweden)

    Arjun eChennu

    2015-12-01

    Full Text Available Desiccated cyanobacterial mats are the dominant biological feature in the Earth's arid zones. While the response of desiccated cyanobacteria to rehydration is well documented for terrestrial systems, information about the response in marine systems is lacking. We used high temporal resolution hyperspectral imaging, liquid chromatography, pulse-amplitude fluorometry, oxygen microsensors and confocal laser microscopy to study this response in a desiccated microbial mat from Exmouth Gulf, Australia. During the initial 15 minutes after rehydration chlorophyll a concentrations increased 2-5 fold and cyanobacterial photosynthesis was re-established. Although the mechanism behind this rapid increase of chlorophyll a remains unknown, we hypothesize that it involves resynthesis from a precursor stored in desiccated cyanobacteria. The subsequent phase (15 min – 48 h involved migration of the reactivated cyanobacteria towards the mat surface, which led, together with a gradual increase in chlorophyll a, to a further increase in photosynthesis. We conclude that the response involving an increase in chlorophyll a and recovery of photosynthetic activity within minutes after rehydration is common for cyanobacteria from desiccated mats of both terrestrial and aquatic origin. However the response of upward migration and its triggering factor appears to be mat-specific and likely linked to other factors.

  14. Electrospun poly(l-lactide)/zein nanofiber mats loaded with Rana chensinensis skin peptides for wound dressing.

    Science.gov (United States)

    Zhang, Mei; Li, Xueqi; Li, Siming; Liu, Yongjia; Hao, Linlin

    2016-09-01

    Electrospun nanofiber mats can display impressive performance as an ideal wound dressing. In this study, poly(l-lactide)(PLLA)/zein nanofiber mats loaded with Rana chensinensis skin peptides (RCSPs) were successfully produced by two different electrospinning techniques, blend and coaxial, with the goal of developing a wound dressing material. The nanofiber mats were investigated by environmental scanning electron microscope (ESEM), transmission electron microscopy (TEM), fourier transform infrared spectroscopy (FTIR), differential scanning calorimeter (DSC), water contact angle, mechanical tests and cell viability. The resulting nanofiber mats exhibited smooth surfaces, tiny diameters and different cross-sectional shapes from pure PLLA and zein nanofibers. The FTIR result showed that PLLA, zein and RCSPs were well dispersed, without chemical interactions. Compared with coaxial nanofiber mats, blending zein-RCSPs with PLLA enhanced hydrophilicity but decreased mechanical properties. Adding RCSPs into the electrospun nanofibers significantly improved the mechanical properties of the mats. Cell viability studies with human foreskin fibroblasts demonstrated that cell growth on PLLA/zein-RCSPs nanofiber mats was significantly higher than that on PLLA/zein nanofiber mats. The results indicate that nanofiber mats containing RCSPs are potential candidates for wound dressing. PMID:27432415

  15. Extraction optimization of soluble compounds of yerba maté

    Directory of Open Access Journals (Sweden)

    César Sambiassi

    2002-06-01

    Full Text Available The objective of this research was the extraction optimization of water soluble compounds of yerba maté. Measures variables were extract concentration and weight of leaves and twigs. Controlled variables were time and temperature of extraction and water/solid relation. A surface response method of three variables was used as experimental design, with 20 experiences in each case. The range of each variable, defined in the experimental design, was: extraction time, 13.2 to 46.8 minutes; temperature, 48.2 to 81.8°C and water solid relation, 4.64 to 11.36 g water/100 g of dry solid. Extract weight varied from 13.14 to 29.56 g in leaves and 8.98 to 16.32 g in twigs (each one per 100 g of dry solid. Extract concentration varied between 2.17 and 3.43 g/100 ml in leaves and between 1.32 and 2.31 g/100 ml in twigs. The results were fit to a linear equation in each case.O objetivo desta pesquisa foi a otimização da extração aquosa da erva mate. As variáveis medidas foram a concentração do extrato e a massa das folhas e ramos. As variáveis controladas foram: o tempo e a temperatura de extração e a relação água/sólido. Como desenho experimental foi utilizado o método de resposta superficial de três variáveis, com vinte experiências em cada caso. A faixa de variação definida para as variáveis no desenho experimental foram: tempo de extração, de 13,2 a 46,8 minutos; temperatura, de 48,2 a 81,8 °C; relação água/sólido, de 4,64 a 11,36 gramas de água por gramas de sólido seco. A massa do extrato variou de 13,14 a 29,56 gramas para as folhas desramificadas e de 8,98 a 16,32 para os ramos (cada por 100 gramas de sólido seco. A concentração de extrato variou entre 2,17 a 3,43 g/ 100 ml nas folhas e entre 1,32 e 2,31 g/ 100 ml nos ramos. Os resultados foram, em ambos casos, ajustados para uma equação linear.

  16. Deposition of Biogenic Iron Minerals in a Methane Oxidizing Microbial Mat

    Directory of Open Access Journals (Sweden)

    Christoph Wrede

    2013-01-01

    Full Text Available The syntrophic community between anaerobic methanotrophic archaea and sulfate reducing bacteria forms thick, black layers within multi-layered microbial mats in chimney-like carbonate concretions of methane seeps located in the Black Sea Crimean shelf. The microbial consortium conducts anaerobic oxidation of methane, which leads to the formation of mainly two biomineral by-products, calcium carbonates and iron sulfides, building up these chimneys. Iron sulfides are generated by the microbial reduction of oxidized sulfur compounds in the microbial mats. Here we show that sulfate reducing bacteria deposit biogenic iron sulfides extra- and intracellularly, the latter in magnetosome-like chains. These chains appear to be stable after cell lysis and tend to attach to cell debris within the microbial mat. The particles may be important nuclei for larger iron sulfide mineral aggregates.

  17. Matériaux organiques pour le génie civil : Approche physico-chimique

    OpenAIRE

    Mouton, Y

    2003-01-01

    Les matériaux organiques sont omniprésents dans le génie civil : bitume sur la route, géotextiles pour les murs de soutènement, membranes pour l'étanchéité des ponts, des tunnels ou des réservoirs, liants de peinture pour la protection des ouvrages métalliques ou du béton, ou encore pour le marquage routier, résines d'injection, produits de collage, adjuvants du béton, matériaux composites, etc. Leur caractère commun réside dans leur structure qui est du ressort de la chimie organique. Matéri...

  18. Is the microagglutination test (MAT) good for predicting the infecting serogroup for leptospirosis in Brazil?

    Science.gov (United States)

    Blanco, Roberta Morozetti; dos Santos, Luis Fernando; Galloway, Renee Lynn; Romero, Eliete Caló

    2016-02-01

    Leptospirosis is a zoonotic infection caused by pathogenic members of the genus Leptospira spp. Knowledge of the prevalent serovars and their maintenance hosts is essential to understand the disease. The aim of this study was to evaluate the ability of serology by the microscopic agglutination test (MAT) to predict the serogroups compared with results of identification of leptospires in São Paulo, Brazil. MAT correctly assigned the serogroup of the infecting isolate in 49/52 cases (94.23%). The serogroup Icterohaemorrhagiae was the predominant serogroup (88.46%). This study showed the usefulness of the MAT to correctly identify the infecting serogroup with a good overall agreement between the serologically-identified infecting serogroup and by identification of the isolate and can be used in epidemiological surveys in São Paulo. However, it should be complemented by the identification of Leptospira isolates. PMID:26851592

  19. Analysis of lipophilic pigments from a phototrophic microbial mat community by high performance liquid chromatography

    Science.gov (United States)

    Palmisano, A. C.; Cronin, S. E.; Des Marais, D. J.

    1988-01-01

    As assay for lipophilic pigments in phototrophic microbial mat communities using reverse phase-high performance liquid chromatography was developed which allows the separation of 15 carotenoids and chloropigments in a single 30 min program. Lipophilic pigments in a laminated mat from a commercial salina near Laguna Guerrero Negro, Baja California Sur, Mexico reflected their source organisms. Myxoxanthophyll, echinenone, canthaxanthin, and zeaxanthin were derived from cyanobacteria; chlorophyll c, and fucoxanthin from diatoms; chlorophyll a from cyanobacteria and diatoms; bacteriochlorophylls a and c, bacteriophaeophytin a, and gamma-carotene from Chloroflexus spp.; and beta-carotene from a variety of phototrophs. Sensitivity of detection was 0.6-6.1 ng for carotenoids and 1.7-12 ng for most chloropigments. This assay represents a significant improvement over previous analyses of lipophilic pigments in microbial mats and promises to have a wider application to other types of phototrophic communities.

  20. Superhydrophobic PVDF and PVDF-HFP nanofibrous mats with antibacterial and anti-biofouling properties

    Science.gov (United States)

    Spasova, M.; Manolova, N.; Markova, N.; Rashkov, I.

    2016-02-01

    Superhydrophobic nanofibrous materials of poly(vinylidene fluoride) (PVDF) and poly(vinylidene fluoride-co-hexafluoropropylene) (PVDF-HFP) were prepared by one-pot electrospinning technique. The mats were decorated with ZnO nanoparticles with silanized surface and a model drug - 5-chloro-8-hydroxyquinolinol (5Cl8HQ). The obtained hybrid nanofibrous materials were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), contact angle measurements, mechanical and microbiological tests. The results showed that the incorporation of ZnO nanoparticles into PVDF and PVDF-HFP nanofibers increased the hydrophobicity (contact angle 152°), improved the thermal stability and imparted to the nanofibrous materials anti-adhesive and antimicrobial properties. The mats containing the model drug possessed antibacterial activity against Escherichia coli and Staphylococcus aureus. The results suggested that the obtained hybrid mats could find potential biomedical applications requiring antibacterial and anti-biofouling properties.

  1. A Matérn model of the spatial covariance structure of point rain rates

    KAUST Repository

    Sun, Ying

    2014-07-15

    It is challenging to model a precipitation field due to its intermittent and highly scale-dependent nature. Many models of point rain rates or areal rainfall observations have been proposed and studied for different time scales. Among them, the spectral model based on a stochastic dynamical equation for the instantaneous point rain rate field is attractive, since it naturally leads to a consistent space–time model. In this paper, we note that the spatial covariance structure of the spectral model is equivalent to the well-known Matérn covariance model. Using high-quality rain gauge data, we estimate the parameters of the Matérn model for different time scales and demonstrate that the Matérn model is superior to an exponential model, particularly at short time scales.

  2. Effect of irradiation on physiological and biochemical property of mat rush seedlings

    International Nuclear Information System (INIS)

    The seeds of different varieties of mat rush were treated by 60Co γ-rays irradiation of 500, 1000, 1500 and 2000 Gy. The seedlings cultured from treated seeds ere used to detect the root activity, seedling growth, chlorophyll content, activities of polyphenol oxidase and catalase, and to investigate the effect of irradiation treatment on the physiological and biochemical properties of mat rush. The results showed that root activity, chlorophyll content and polyphenol oxidase activity of the control group was higher than those of all treatment groups, indicating that irradiation treatment could affect the above physiological and biochemical traits. Meanwhile, it was found that hydrogen peroxide activity of 500 Gy treatment was higher than that of CK and other treatment. In addition, with dose increasing, the stem length of seedlings was increased, suggesting that irradiation treatment could promote the seedling growth within some range of dosage. 500 Gy was recommended as suitable dosage for irradiation mutagenesis of mat rush. (authors)

  3. Spatial patterns and links between microbial community composition and function in cyanobacterial mats

    Directory of Open Access Journals (Sweden)

    MohammadA. A.Al-Najjar

    2014-08-01

    Full Text Available We imaged reflectance and variable fluorescence in 25 cyanobacterial mats from 4 distant sites around the globe to assess, at different scales of resolution, spatial variabilities in the physiological parameters characterizing their photosynthetic capacity, including the absorptivity by chlorophyll a (A_chl, maximum quantum yield of photosynthesis (Y_max and light acclimation irradiance (I_k. Generally, these parameters significantly varied within individual mats on a sub-millimeter scale, with about 2-fold higher variability in the vertical than in the horizontal direction. The average vertical profiles of Y_max and I_k decreased with depth in the mat, while A_chl exhibited a sub-surface maximum. The within-mat variability was comparable to, but often larger than, the between-sites variability, whereas the within-site variabilities (i.e., between samples from the same site were generally lowest. When compared based on averaged values of their photosynthetic parameters, mats clustered according to their site of origin. Similar clustering was found when the community composition of the mats' cyanobacterial layers were compared by automated ribosomal intergenic spacer analysis, indicating a significant link between the microbial community composition and function. Although this link is likely the result of community adaptation to the prevailing site-specific environmental conditions, our present data is insufficient to identify the main factors determining these patterns. Nevertheless, this study demonstrates that the spatial variability in the photosynthetic capacity and light acclimation of benthic phototrophic microbial communities is at least as large on a sub-millimeter scale as it is on a global scale, and suggests that this pattern of variability scaling is similar for the microbial community composition.

  4. Energy saving by improving the insulation of mat foundation slab. Energiansaeaestoemahdollisuudet maanvaraisen alapohjarakenteen laemmoeneristettae parantamalla

    Energy Technology Data Exchange (ETDEWEB)

    Bergman, J.; Viljanen, M. (Helsinki Univ. of Technology, Otaniemi (Finland). Lab. of Structural Engineering and Building Physics); Friberg, P.; Slunga, E. (Helsinki Univ. of Technology, Otaniemi (Finland). Lab. of Soil Mechanics); Lehtinen, T. (Helsinki Univ. of Technology, Otaniemi (Finland). Lab. of Structural Engineering)

    1992-01-01

    In the research the energy saving possibilities of mat foundation slabs were studied in the structural engineering point of view. The energy saving levels were 25 %, 50 % and 75 % compared to the structures in use nowadays. The energy consumptions of the mat foundation slabs, whose thermal insulation were improved, were calculated by numerical two dimensional program. The ability of use a trace gas method to detect uncontrolled air flows was studied by laboratory tests. The effect of the underground air flows on the thermal behavior of mat slabs studied by field measurements and laboratory tests. The frost insulations of mat slabs will be designed individually. In the structural designing the frost insulations calculated in the research can be used for help as far as they are applicable to the case. Instead of the individual designing frost insulations can be determined by using the regulations of unheated houses or the foundation level can be lowered. The laboratory and field tests show, that the airtightness of foundation structures in use, especially the plinth, should be taken more carefully into account to get as good as possible correlations between the calculated and the real energy consumption. The trace gas method can be used to detect uncontrolled air flows in the slab insulation. The use of the saxon pipe system as a radon technical solution in energy saving mat slabs structures should be researched before taken in use. The moisture technical designing of energy saving mat slabs should be done by numerical calculations. Wood base materials can't be used without special examination below the upper surface of the slab thermal insulation

  5. Spatial patterns and links between microbial community composition and function in cyanobacterial mats

    KAUST Repository

    Al-Najjar, Mohammad A. A.

    2014-08-06

    We imaged reflectance and variable fluorescence in 25 cyanobacterial mats from four distant sites around the globe to assess, at different scales of resolution, spatial variabilities in the physiological parameters characterizing their photosynthetic capacity, including the absorptivity by chlorophyll a (Achl), maximum quantum yield of photosynthesis (Ymax), and light acclimation irradiance (Ik). Generally, these parameters significantly varied within individual mats on a sub-millimeter scale, with about 2-fold higher variability in the vertical than in the horizontal direction. The average vertical profiles of Ymax and Ik decreased with depth in the mat, while Achl exhibited a sub-surface maximum. The within-mat variability was comparable to, but often larger than, the between-sites variability, whereas the within-site variabilities (i.e., between samples from the same site) were generally lowest. When compared based on averaged values of their photosynthetic parameters, mats clustered according to their site of origin. Similar clustering was found when the community composition of the mats\\' cyanobacterial layers were compared by automated ribosomal intergenic spacer analysis (ARISA), indicating a significant link between the microbial community composition and function. Although this link is likely the result of community adaptation to the prevailing site-specific environmental conditions, our present data is insufficient to identify the main factors determining these patterns. Nevertheless, this study demonstrates that the spatial variability in the photosynthetic capacity and light acclimation of benthic phototrophic microbial communities is at least as large on a sub-millimeter scale as it is on a global scale, and suggests that this pattern of variability scaling is similar for the microbial community composition. © 2014 Al-Najjar, Ramette, Kühl, Hamza, Klatt and Polerecky.

  6. Different sensing mechanisms in single wire and mat carbon nanotubes chemical sensors

    CERN Document Server

    Neumann, P L; Dobrik, G; Kertész, K; Horváth, E; Lukács, I E; Biró, L P; Horváth, Z E

    2014-01-01

    Chemical sensing properties of single wire and mat form sensor structures fabricated from the same carbon nanotube (CNT) materials have been compared. Sensing properties of CNT sensors were evaluated upon electrical response in the presence of five vapours as acetone, acetic acid, ethanol, toluene, and water. Diverse behaviour of single wire CNT sensors was found, while the mat structures showed similar response for all the applied vapours. This indicates that the sensing mechanism of random CNT networks cannot be interpreted as a simple summation of the constituting individual CNT effects, but is associated to another robust phenomenon, localized presumably at CNT-CNT junctions, must be supposed.

  7. UV B-Induced Vertical Migrations of Cyanobacteria in a Microbial Mat

    OpenAIRE

    Bebout, B. M.; Garcia-Pichel, F

    1995-01-01

    Exposure to moderate doses of UV B (0.35 to 0.79 W m(sup-2) s(sup-1) or 0.98 to 2.2 (mu)mol of photons m(sup-2) s(sup-1) at 310 nm) caused the surface layers of microbial mats from Solar Lake, Sinai, Egypt, to become visibly lighter green. Concurrent with the color change were rapid and dramatic reductions in gross photosynthesis and in the resultant high porewater oxygen concentrations in the surface layers of the mats. The depths at which both maximum gross photosynthesis and maximum oxygen...

  8. Description of the HiMAT Tailored composite structure and laboratory measured vehicle shape under load

    Science.gov (United States)

    Monaghan, R. C.

    1981-01-01

    The aeroelastically tailored outer wing and canard of the highly maneuverable aircraft technology (HiMAT) vehicle are closely examined and a general description of the overall structure of the vehicle is provided. Test data in the form of laboratory measured twist under load and predicted twist from the HiMAT NASTRAN structural design program are compared. The results of this comparison indicate that the measured twist is generally less than the NASTRAN predicted twist. These discrepancies in twist predictions are attributed, at least in part, to the inability of current analytical composite materials programs to provide sufficiently accurate properties of matrix dominated laminates for input into structural programs such as NASTRAN.

  9. NanoSIP: Developing Community Imaging for Phylogenetic and Functional Characterization Using Cyanobacterial Mats

    Energy Technology Data Exchange (ETDEWEB)

    Woebken, D., L.C. Burow, L. Prufert-Bebout, B.M. Bebout, T. M. Hoehler, J. Pett-Ridge, A.M. Spormann; Singer, S W; McMurdie, P J; Weber, P K

    2011-10-01

    This project was to develop and optimize the following technologies: stable isotope probing + NanoSIMS analysis (nanoSIP), FISH, functional gene analysis, H2 production measurements, culturing, and metatranscriptomics for specific use in microbial mat systems. The larger goal was to further develop these methodologies in a way that facilitates their linkage, high fidelity 3-D correlation to location specific environmental change integrating geochemical characterization, such that ability to see and characterize microbial community responses to normal daily fluctuations and further ecological manipulations, in different locations of the mat communities is optimized.

  10. The parametric study of SSI analysis for large mat foundation structure

    International Nuclear Information System (INIS)

    The developments of in-structure response spectrum (IRS) are major procedures of Generic Implementation Procedure (GIP) for the resolution of USI A-46. There are many factors influencing to IRS characteristics; especially the characteristics of surrounding soil of foundation affect the frequency and amplification IRS peaks. The most of soil-structure interaction (SSI) analyses for a large mat foundation such as base of the auxiliary building complex have been performed by simplified approaches, because of its complexity and huge computing cost. In this paper, the parametric study of SSI analysis about large mat foundation was performed. As a tool of SSI analyses, the program SASSI was used

  11. MAT-DB - A database for nuclear energy related materials data

    International Nuclear Information System (INIS)

    The web-enabled materials database (Mat-DB) of JRC-IE has a long-term history in storing materials test data resulting from European and international research projects. The database structure and the user-guidance has bee permanently updated improved and optimized. The database is implemented in the secure ODIN portal: https://odin.jrc.ec.europa.eu of JRC-IE. This architecture guarantees fast access to confidential and public data and documentation which are stored in an inter-related document management database (DoMa). It is a part of JRC's nuclear knowledge management. Mat-DB hosts the whole pool of IAEA surveillance data of reactor pressure vessel materials from different nuclear power plants of the member states. Mat-DB contains also thousands of European GEN IV reactor systems related R and D materials data which are an important basis for the evaluating and extrapolating design data for candidate materials and setting up design rules covering high temperature exposure, irradiation and corrosion. Those data and rules would match also fusion related components. Mat-DB covers thermo-mechanical and thermo-physical properties data of engineering alloys at low, elevated and high temperatures for base materials and joints, including irradiated materials for nuclear fission and fusion applications, thermal barrier coated materials for gas turbines and properties of corroded materials. The corrosion part refers to weight gain/loss data of high temperature exposed engineering alloys and ceramic materials. For each test type the database structure reflects international test standards and recommendations. Mat-DB features an extensive library of evaluation programs for web-enabled assessment of uniaxial creep, fatigue, crack growth and high temperature corrosion properties. Evaluations can be performed after data retrieval or independently of Mat-DB by transferring other materials data in a given format to the programs. The fast evaluation processes help the user to

  12. Photosynthetic Potential and Light-Dependent Oxygen Consumption in a Benthic Cyanobacterial Mat

    OpenAIRE

    Jørgensen, Bo Barker; Cohen, Yehuda; Revsbech, Niels Peter

    1988-01-01

    The potential to carry out oxygenic photosynthesis after prolonged burial below the photic zone was studied at 0.1-mm depth intervals in the thick, laminated Microcoleus chthonoplastes mats growing in Solar Lake, Sinai. The buried mat community lost about 20% of its photosynthetic potential with depth per annual layer down to 8- to 10-year-old layers at a 14-mm depth. In some of the older layers, below a 30-mm depth, light-dependent oxygen consumption which increased with increasing light int...

  13. The effectiveness of the 4MAT teaching model upon student achievement and attitude levels

    OpenAIRE

    UYANGÖR, Sevinç MERT

    2012-01-01

    4MAT is an 8-step, sequential instructional model based on two theoretical constructs: Kolb's model of learning styles and the concept of brain hemisphericity. The model, developed by B. McCarthy (1987) is derived by interacting each of Kolb's four quadrants with both left and right brain. The purpose of this study is to examine the influence of the 4MAT teaching model which depends on learning styles that have been generated by the help of the relationship between the brain and learning; and...

  14. Modular development mat reinforcing and liners containment/annulus building. Final report supplement. Volume I

    International Nuclear Information System (INIS)

    The feasibility of developing a modular system approach for the construction of containment mats has been established. The investigative results obtained from a plant used for the modular study has determined that (1) modularization results in a 10-week reduction in the construction schedule critical path over that for the conventional approach, and (2) modularization is cost effective and could result in a savings of approximately $10,700,000. Accordingly, it is recommended that the modular system approach be adopted as standard practice for the construction of containment mats

  15. Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample.

    Science.gov (United States)

    Reddy, Gundlapally S N; Prakash, Jogadhenu S S; Prabahar, Vadivel; Matsumoto, Genki I; Stackebrandt, Erko; Shivaji, Sisinthy

    2003-01-01

    Strain CMS 76orT, an orange-pigmented bacterium, was isolated from a cyanobacterial mat sample from a pond located in McMurdo Dry Valley, Antarctica. On the basis of chemotaxonomic and phylogenetic properties, strain CMS 76orT was identified as a member of the genus Kocuria. It exhibited a 16S rDNA similarity of 99.8% and DNA-DNA similarity of 71% with Kocuria rosea (ATCC 186T). Phenotypic traits confirmed that strain CMS 78orT and K. rosea were well differentiated. Furthermore, strain CMS 76orT could be differentiated from the other reported species of Kocuria, namely Kocuria kristinae (ATCC 27570T), Kocuria varians (ATCC 15306T), Kocuria rhizophila (DSM 11926T) and Kocuria palustris (DSM 11025T), on the basis of a number of phenotypic features. Therefore, it is proposed that strain CMS 76orT (= MTCC 3702T = DSM 14382T) be assigned to a novel species of the genus Kocuria, as Kocuria polaris. PMID:12656171

  16. DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae)

    OpenAIRE

    Larranaga, Nerea; Hormaza, José I.

    2015-01-01

    The DNA barcode initiative aims to establish a universal protocol using short genetic sequences to discriminate among animal and plant species. Although many markers have been proposed to become the barcode of plants, the Consortium for the Barcode of Life (CBOL) Plant Working Group recommended using as a core the combination of two portions of plastid coding region, rbcL and matK. In this paper, specific markers based on matK sequences were developed for 7 closely related Annona species of a...

  17. [Multi-Species Biofilms in Ecology, Medicine, and Biotechnology].

    Science.gov (United States)

    Nozhevnikova, A N; Botchkova, E A; Plakunov, V K

    2015-01-01

    The structure, composition, and developmental patterns of multi-species biofilms are analyzed, as well as the mechanisms of interaction of their microbial components. The main methodological approaches used for analysis of multi-species biofilms, including omics technologies, are characterized. Environmental communities (cyanobacterial mats and methanotrophic communities), as well as typical multi-species communities of medical importance (oral cavity, skin, and gut microbiomes) are described. A special section deals with the role of multi-species biofilms in such biotechnological processes as wastewater treatment, heavy metal removal, corrosion control, and environmental bioremediation. PMID:26964353

  18. Testing four barcoding markers for species identification of Potamogetonaceae

    Institute of Scientific and Technical Information of China (English)

    Zhi-Yuan DU; Alitong QIMIKE; Chun-Feng YANG; Jin-Ming CHEN; Qing-Feng WANG

    2011-01-01

    The pondweeds (Potamogetonaceae) are among the most important plant groups in the aquatic environment. Owing to their high morphological and ecological diversity, species identification of this aquatic family remains problematic. DNA barcoding involves sequencing a standard DNA region and has been shown to be a powerful tool for species identification. In the present study, we tested four barcoding markers (rbcL, matK, internal transcribed spacer (ITS), and trnH-psbA) in 15 Potamogeton species and two Stuckenia species, representing most species of the Potamogetonaceae in China. The results show that all four regions can distinguish and support the newly proposed genera of Stuckenia from Potamogeton. Using ITS and trnH-psbA, significant interspecific genetic variability was shown. However, intraspecific genetic variability of trnH-psbA is high and so it is not suitable for barcoding in Potamogetonaceae. The ITS and matK regions showed good discrimination. However, matK was not easy to sequence using universal primers. The best performing single locus was ITS, making it a potentially useful DNA barcode in Potamogetonaceae.

  19. The application of matK sequence as DNA barcode in Xanthium%matK序列作为DNA条形码在苍耳属中的应用

    Institute of Scientific and Technical Information of China (English)

    胡伟毅; 邵套喜

    2013-01-01

    matK序列作为DNA条形码,对从国外截获的7种苍耳属植物进行物种区分鉴定研究,采用DNeasy(R)Plant Mini Kit试剂盒进行总DNA的提取,应用通用引物对其matK基因进行扩增,测序得到7种苍耳属植物的matK序列,利用MEGA 5.1软件对这7种苍耳属植物的matK序列进行比对和分析并构建系统树,结果显示:matK序列能从基因位点层面对苍耳属植物进行区分鉴定.

  20. Characterization and Modification of Electrospun Fiber Mats for Use in Composite Proton Exchange Membranes

    Science.gov (United States)

    Mannarino, Matthew Marchand

    Electrostatic fiber formation, or electrospinning, offers a particularly simple and robust method to create polymeric nanofibers of various sizes and morphologies. In electrospinning, a viscoelastic fluid is charged so that a liquid jet is ejected from the surface of the fluid (typically in the form of a drop supplied by a needle or spinneret) and collected on a grounded plate, creating a nonwoven fiber mat. Modification of the diameter of the fibers as well as the porosity, specific surface area, and mechanical properties of the mat allows one to tailor electrospun mats for specific applications. Despite the widespread and rapidly growing use of electrospinning in the fabrication of novel nanomaterials, there are no simple, universal methods of predicting, a priori, the properties of electrospun fibers from knowledge of the polymer solution properties and electrospinning operating conditions alone. Changing a single fluid or processing parameter can affect the jet and fiber formation through several mechanisms. For example, using a different solvent can change several properties of the electrospinning fluid, such as the dielectric constant, conductivity, surface tension, and solute-solvent interaction. The work in this thesis seeks to develop a simple relation for predicting terminal jet diameter during electrospinning, which accounts for solution viscoelasticity as well as solution conductivity and operating parameters that can be easily measured and controlled. The mechanical and tribological properties of electrospun fiber mats are of paramount importance to their utility as components in a variety of applications. Although some mechanical properties of these mats have been investigated previously, reports of their tribological properties are essentially nonexistent. In this thesis, electrospun nanofiber mats of poly(trimethyl hexamethylene terephthalamide) (PA 6(3)T) and poly(hexamethylene adipamide) (PA 6,6) are characterized mechanically and tribologically

  1. The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation

    OpenAIRE

    Teske, Andreas; de Beer, Dirk; McKay, Luke J.; Margaret K. Tivey; Biddle, Jennifer F.; Hoer, Daniel; Lloyd, Karen G.; Lever, Mark A.; Røy, Hans; Albert, Daniel B.; Mendlovitz, Howard P.; MacGregor, Barbara J.

    2016-01-01

    The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediment...

  2. Effects of base mat flexibility and structure-soil-structure interaction on the seismic responses of a nuclear stack building

    Energy Technology Data Exchange (ETDEWEB)

    Kabir, A.F.; Malik, L.E. [Advanced Engineering Consultants, Inc., San Francisco, CA (United States); Maryak, M.E. [Westinghouse Savannah River Co., Aiken, SC (United States)

    1991-12-31

    A nuclear exhaust stack building was analyzed considering flexibility of the base mat and through-soil coupling with a nearby massive reactor building. The analysis indicated that the base mat flexibility and the proximity of the reactor building significantly affect the seismic responses of the stack building.

  3. Effects of base mat flexibility and structure-soil-structure interaction on the seismic responses of a nuclear stack building

    International Nuclear Information System (INIS)

    A nuclear exhaust stack building was analyzed considering flexibility of the base mat and through-soil coupling with a nearby massive reactor building. The analysis indicated that the base mat flexibility and the proximity of the reactor building significantly affect the seismic responses of the stack building. (author)

  4. Effects of base mat flexibility and structure-soil-structure interaction on the seismic responses of a nuclear stack building

    Energy Technology Data Exchange (ETDEWEB)

    Kabir, A.F.; Malik, L.E. (Advanced Engineering Consultants, Inc., San Francisco, CA (United States)); Maryak, M.E. (Westinghouse Savannah River Co., Aiken, SC (United States))

    1991-01-01

    A nuclear exhaust stack building was analyzed considering flexibility of the base mat and through-soil coupling with a nearby massive reactor building. The analysis indicated that the base mat flexibility and the proximity of the reactor building significantly affect the seismic responses of the stack building.

  5. Multifunctional ZnO/Nylon 6 nanofiber mats by an electrospinning– electrospraying hybrid process for use in protective applications

    Science.gov (United States)

    ZnO/Nylon 6 nanofiber mats were prepared by an electrospinning–electrospraying hybrid process in which ZnO nanoparticles were dispersed on the surface of Nylon 6 nanofibers without becoming completely embedded. The prepared ZnO/Nylon 6 nanofiber mats were evaluated for their abilities to kill bacter...

  6. Preparation and photochromic properties of ultra-fine H3PW11MoO40/PVA fibre mats

    International Nuclear Information System (INIS)

    Novel photochromic materials, H3PW11MoO40/Poly (vinyl alcohol) (PVA) ultra-fine fibre mats containing different weight percentages of H3PW11MoO40, have been prepared from different H3PW11MoO40/PVA solutions by an electrospinning technique. IR spectroscopy, wide-angle x-ray diffraction, and scanning electron microscope spectroscopy are used to characterize the fibre mats. Results of viscosity and conductivity measurements of the solutions indicate that lower viscosity and higher conductivity favour the formation of thin fibres without beads. When irradiated with ultraviolet light (313.2 nm), the colour of the fibre mats changes from white to blue, and the mats show reversible photochromism. IR and ESR spectra of the irradiated fibre mats indicate a conceivable photochromic mechanism, i.e. MoVI is reduced under ultraviolet irradiation. Meanwhile, PVA is oxidized to unsaturated ketone or aldehyde

  7. Modulation of a fluorescence switch of nanofiber mats containing photochromic spironaphthoxazine and D-π-A charge transfer dye

    International Nuclear Information System (INIS)

    Photoswitchable poly(methyl methacrylate) (PMMA) nanofiber mats containing spironaphthoxazine (SPO)/electron donor-π-acceptor (D-π-A) type fluorescent dye (TCF) were prepared by electrospinning. The photoregulated fluorescence switching behaviors of SPO/TCF blended solution and PMMA nanofiber mats containing SPO/TCF were also studied. Not only SPO/TCF blended solution but also PMMA nanofiber mats containing SPO/TCF showed reversible modulation of fluorescence intensity using alternating irradiation with UV and visible light. Highlights: ▶ We have designed PMMA nanofiber mats containing a photochromic SPO and fluorescent TCF. ▶ Photoswitchable PMMA nanofiber mats containing SPO/TCF were prepared by electrospinning. ▶ Reversible modulation of fluorescence intensity was achieved by irradiation with UV/vis.

  8. An Empirical Study of an RFID Mat Sensor System in a Group Home

    Directory of Open Access Journals (Sweden)

    Motoki Miura

    2009-04-01

    Full Text Available We have been developing an RFID (radio frequency identification mat system to assist caregivers in a group home. In Japan, the number of group homes offering home-like care for elderly persons suffering from dementia has increased considerably. Even though the smaller number of people residing in a group home makes it suitable for family-like care, the scarcity of caregivers increases the burden, especially during the night. To augment caregiver attention, we developed floor mats with embedded RFID antennae and slippers with RFID tags. These can help caregivers be aware of the activities of persons suffering from dementia by specifying whether an individual has passed over a mat in a particular corridor. This not only helps the caregivers understand such persons by reviewing their activities but also keeps them informed about their current activities. We introduced the floor mats in a real group home and confirmed the feasibility of the system. In this study, we describe the system and lessons learned from our experiment.

  9. Modeling the pullout characteristics of welded wire mats embedded in silty sand

    International Nuclear Information System (INIS)

    This paper is an outgrowth of the on-going research on discrete finite element modeling of welded wire mesh reinforced soil structures such as the welded wire and RSE walls. The stiffness characteristics of the wire mesh-soil interfaces are modeled by a nonlinear hyperbolic relationship between the applied pullout stress and the associated mat placement. The relevant parameters are estimated from laboratory pullout tests that were conducted for welded wire mats embedded on silty sand. Since the bulk of the pullout resistance of welded wire mesh reinforcements is derived from the bearing resistance of the transverse wires that constitute the test mats. This feature permits proper evaluation of actual interface parameters for the actual reinforced soil structures in which the actual lengths of the mats are longer (i.e. more transverse members) than the specimen used in the laboratory pullout tests. The resulting pullout stress-displacement formulations are then verified by comparing the predicted pullout resistance to the existing specifications and design methods for estimated the pullout capacities of grid reinforcements. 22 refs., 13 figs

  10. Mechanism study of selective heavy metal ion removal with polypyrrole-functionalized polyacrylonitrile nanofiber mats

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Jianqiang; Luo, Chao [Key Laboratory of Carbon Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing 100029 (China); Qi, Genggeng [Department of Materials Science and Engineering, Cornell University, Ithaca, NY (United States); Pan, Kai, E-mail: pankai@mail.buct.edu.cn [Key Laboratory of Carbon Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing 100029 (China); Department of Materials Science and Engineering, Cornell University, Ithaca, NY (United States); Cao, Bing, E-mail: bcao@mail.buct.edu.cn [Key Laboratory of Carbon Fiber and Functional Polymers, Ministry of Education, Beijing University of Chemical Technology, Beijing 100029 (China)

    2014-10-15

    Graphical abstract: - Highlights: • PAN/PPy core/shell nanofiber used for Cr(VI) removal. • Adsorption mechanisms were investigated. • Selective adsorption performances were investigated. - Abstract: Polyacrylonitrile/polypyrrole (PAN/PPy) core/shell nanofiber mat was prepared through electrospinning followed by a simple chemical oxidation method. The polypyrrole-functionalized nanofiber mats showed selective adsorption performance for anions. The interaction between heavy metal anions and polypyrrole (especially the interaction between Cr{sub 2}O{sub 7}{sup 2−} and polypyrrole) during the adsorption process was studied. The results showed that the adsorption process included two steps: one was the anion exchange process between the Cl{sup −} and Cr(VI), and the other was the redox process for the Cr(VI) ions. The adsorption amount was related to the protonation time of the PAN/PPy nanofiber mat and increased as protonation time increased. Meanwhile, the Cr(VI) ions were reduced to Cr(III) through the reaction with amino groups of polypyrrole (from secondary amines to tertiary amines). PAN/PPy nanofiber mat showed high selectivity for Cr(VI), and the adsorption performance was nearly unaffected by other co-existing anions (Cl{sup −}, NO{sub 3}{sup −}, and SO{sub 4}{sup 2−}) except for PO{sub 4}{sup 3−} for the pH change.

  11. Mechanism study of selective heavy metal ion removal with polypyrrole-functionalized polyacrylonitrile nanofiber mats

    International Nuclear Information System (INIS)

    Graphical abstract: - Highlights: • PAN/PPy core/shell nanofiber used for Cr(VI) removal. • Adsorption mechanisms were investigated. • Selective adsorption performances were investigated. - Abstract: Polyacrylonitrile/polypyrrole (PAN/PPy) core/shell nanofiber mat was prepared through electrospinning followed by a simple chemical oxidation method. The polypyrrole-functionalized nanofiber mats showed selective adsorption performance for anions. The interaction between heavy metal anions and polypyrrole (especially the interaction between Cr2O72− and polypyrrole) during the adsorption process was studied. The results showed that the adsorption process included two steps: one was the anion exchange process between the Cl− and Cr(VI), and the other was the redox process for the Cr(VI) ions. The adsorption amount was related to the protonation time of the PAN/PPy nanofiber mat and increased as protonation time increased. Meanwhile, the Cr(VI) ions were reduced to Cr(III) through the reaction with amino groups of polypyrrole (from secondary amines to tertiary amines). PAN/PPy nanofiber mat showed high selectivity for Cr(VI), and the adsorption performance was nearly unaffected by other co-existing anions (Cl−, NO3−, and SO42−) except for PO43− for the pH change

  12. Cooperação jurídica internacional em matéria civil

    OpenAIRE

    Carmen Tiburcio

    2013-01-01

    O trabalho cuida dos sistemas e dos instrumentos de cooperação em matéria civil no âmbito do Mercosul: Protocolos de Las Leñas e Ouro Preto. Analisam-se os textos dos respectivos tratados, a jurisprudência brasileira e de outros países do Mercosul.

  13. Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities

    Science.gov (United States)

    Paerl, H. W.; Bebout, B. M.; Joye, S. B.; Des Marais, D. J.

    1993-01-01

    Intertidal marine microbial mats exhibited biologically mediated uptake of low molecular weight dissolved organic matter (DOM), including D-glucose, acetate, and an L-amino acid mixture at trace concentrations. Uptake of all compounds occurred in darkness, but was frequently enhanced under natural illumination. The photosystem 2 inhibitor, 3-(3,4-dichlorophenyl)-1,1-dimethyl urea (DCMU) generally failed to inhibit light-stimulated DOM uptake. Occasionally, light plus DCMU-amended treatments led to uptake rates higher than light-incubated samples, possibly due to phototrophic bacteria present in subsurface anoxic layers. Uptake was similar with either 3H- or 14C-labeled substrates, indicating that recycling of labeled CO2 via photosynthetic fixation was not interfering with measurements of light-stimulated DOM uptake. Microautoradiographs showed a variety of pigmented and nonpigmented bacteria and, to a lesser extent, cyanobacteria and eucaryotic microalgae involved in light-mediated DOM uptake. Light-stimulated DOM uptake was often observed in bacteria associated with sheaths and mucilage surrounding filamentous cyanobacteria, revealing a close association of organisms taking up DOM with photoautotrophic members of the mat community. The capacity for dark- and light-mediated heterotrophy, coupled to efficient retention of fixed carbon in the mat community, may help optimize net production and accretion of mats, even in oligotrophic waters.

  14. Welcome address / Mats Estonius, Toomas Hendrik Ilves, Eduardo Ibàñes, Uffe A. Baslev

    Index Scriptorium Estoniae

    2010-01-01

    Läänemere strateegia konverentsi avasõnad laususid Tallinna Ülikooli teadusprorektor Mats Estonius, Eesti Vabariigi president Toomas Hendrik Ilves ((vt. ka foto lk. 21), Hispaania Kuningriigi suursaadik Eestis Eduardo Ibáñes ja Taani Kuningriigi suursaadik Eestis Uffe A. Baslev

  15. T-MATS Toolbox for the Modeling and Analysis of Thermodynamic Systems

    Science.gov (United States)

    Chapman, Jeffryes W.

    2014-01-01

    The Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS) is a MATLABSimulink (The MathWorks Inc.) plug-in for creating and simulating thermodynamic systems and controls. The package contains generic parameterized components that can be combined with a variable input iterative solver and optimization algorithm to create complex system models, such as gas turbines.

  16. Fabrication of Ag nanoparticles dispersed in PVA nanowire mats by microwave irradiation and electro-spinning

    International Nuclear Information System (INIS)

    In this study, the antimicrobial substance, silver nanoparticles (Ag NPs) loaded in poly (vinyl alcohol) (PVA) nanowire mats were fabricated by conjugation of the electro-spinning method and the microwave-assisted process. The best PVA nanowire mats were fabricated by through control of electro-spinning conditions, which were applied for fabrication of Ag NPs loaded in PVA nanowires. PVA was used not only as a carrier for loading of Ag NPs but also as a reduction agent with which the Ag+ ion was already reduced to a large number of Ag NPs by irradiation with a microwave. Ag NPs were synthesized inside the PVA solution depending on the time of microwave irradiation - whether for 60 s or 90 s. Size distribution of Ag NPs was 5-10 nm in diameter for 60 s; and 10-20 nm in diameter for 90 s of irradiation. Presence of Ag NPs acquired through microwave assisted irradiation was confirmed by X-ray diffraction profiles (XRD). Microstructure, particle size distribution, and morphology of both the nanowire mats and the Ag particles were investigated using SEM and TEM techniques. The effect of Ag-NPs on the PVA mechanical property of nano-fibrous mats was investigated according to tensile strength. Antibacterial activity of PVA loaded Ag NPs at different irradiation times was tested on Gram-positive bacteria, Staphylococcus aureus Gram-negative bacteria, and Escherichia coli.

  17. The Effectiveness of Talking Mats[R] with People with Intellectual Disability

    Science.gov (United States)

    Murphy, Joan; Cameron, Lois

    2008-01-01

    People with intellectual disability have significant difficulties in ensuring their voice is heard. Talking Mats is a low tech communication resource which helps understanding and supports expression. This study examined the effectiveness of the resource for people with intellectual disability. A mixed method quantitative and qualitative study…

  18. Using the 4MAT Framework to Design a Problem-Based Learning Biostatistics Course

    Science.gov (United States)

    Nowacki, Amy S.

    2011-01-01

    The study presents and applies the 4MAT theoretical framework to educational planning to transform a biostatistics course into a problem-based learning experience. Using a four-question approach, described are specific activities/materials utilized at both the class and course levels. Two web-based instruments collected data regarding student…

  19. Nitrogen fixation in a non-heterocystous cyanobacterial mat from a mountain river

    Science.gov (United States)

    Berrendero, Esther; Valiente, Eduardo Fernández; Perona, Elvira; Gómez, Claudia L.; Loza, Virginia; Muñoz-Martín, M. Ángeles; Mateo, Pilar

    2016-01-01

    In situ nitrogen fixation was investigated in a cyanobacterial mat growing on the bed of rocks of the Muga River, Spain. The filamentous non-heterocystous cyanobacterium Schizothrix dominated the mat, showing nitrogenase activity in the light at similar rates to those found in nearby heterocystous Rivularia colonies. N2 fixation in the light was significantly increased by an inhibitor of PSII and oxygen evolution, DCMU (3-[3,4-dichlorophenyl]-1,1-dimethylurea), and anaerobic conditions. However, no nitrogenase activity was found in the dark. Addition of fructose as a respiratory substrate induced nitrogenase activity in samples incubated under aerobic conditions in the dark but not in anaerobic conditions. Microelectrode oxygen profiles showed internal microaerobic microzones where nitrogen fixation might concentrate. Analyses of the 16S rRNA gene revealed only the presence of sequences belonging to filamentous non-heterocystous cyanobacteria. nifH gene diversity showed that the major phylotypes also belonged to this group. One of the three strains isolated from the Schizothrix mat was capable of fixing N2 and growing in the absence of combined N. This was consistent with the nifH gene analysis. These results suggest a relevant contribution of non-heterocystous cyanobacteria to nitrogen fixation in these mats. PMID:27476439

  20. Formation and Fate of Fermentation Products in Hot Spring Cyanobacterial Mats

    OpenAIRE

    Anderson, Karen L.; Tayne, Timothy A.; Ward, David M.

    1987-01-01

    The fate of representative fermentation products (acetate, propionate, butyrate, lactate, and ethanol) in hot spring cyanobacterial mats was investigated. The major fate during incubations in the light was photoassimilation by filamentous bacteria resembling Chloroflexus aurantiacus. Some metabolism of all compounds occurred under dark aerobic conditions. Under dark anaerobic conditions, only lactate was oxidized extensively to carbon dioxide. Extended preincubation under dark anaerobic condi...

  1. Eight-Week Traditional Mat Pilates Training-Program Effects on Adult Fitness Characteristics

    Science.gov (United States)

    Rogers, Kate; Gibson, Ann L.

    2009-01-01

    We investigated responses of adult, novice practitioners (n = 9) to an 8-week traditional mat Pilates program (P) that met 1 hr/day three times/week. Classes consisted primarily of beginner and intermediate level exercises. Compared to an active control group (C; n = 13) that showed no improvements, those in P significantly (p less than 0.05)…

  2. Fabrication of Ag nanoparticles dispersed in PVA nanowire mats by microwave irradiation and electro-spinning

    Energy Technology Data Exchange (ETDEWEB)

    Nguyen, Thi-Hiep [Department of Biomedical Engineering and Materials, College of Medicine, Soonchunhyang University, Cheonan, 330-090 (Korea, Republic of); Lee, Kap-Ho [School of Advanced Materials Engineering, Chungnam National University, Yuseong-gu, Daejon 305 (Korea, Republic of); Lee, Byong-Taek, E-mail: lbt@sch.ac.kr [Department of Biomedical Engineering and Materials, College of Medicine, Soonchunhyang University, Cheonan, 330-090 (Korea, Republic of)

    2010-08-30

    In this study, the antimicrobial substance, silver nanoparticles (Ag NPs) loaded in poly (vinyl alcohol) (PVA) nanowire mats were fabricated by conjugation of the electro-spinning method and the microwave-assisted process. The best PVA nanowire mats were fabricated by through control of electro-spinning conditions, which were applied for fabrication of Ag NPs loaded in PVA nanowires. PVA was used not only as a carrier for loading of Ag NPs but also as a reduction agent with which the Ag{sup +} ion was already reduced to a large number of Ag NPs by irradiation with a microwave. Ag NPs were synthesized inside the PVA solution depending on the time of microwave irradiation - whether for 60 s or 90 s. Size distribution of Ag NPs was 5-10 nm in diameter for 60 s; and 10-20 nm in diameter for 90 s of irradiation. Presence of Ag NPs acquired through microwave assisted irradiation was confirmed by X-ray diffraction profiles (XRD). Microstructure, particle size distribution, and morphology of both the nanowire mats and the Ag particles were investigated using SEM and TEM techniques. The effect of Ag-NPs on the PVA mechanical property of nano-fibrous mats was investigated according to tensile strength. Antibacterial activity of PVA loaded Ag NPs at different irradiation times was tested on Gram-positive bacteria, Staphylococcus aureus Gram-negative bacteria, and Escherichia coli.

  3. Producció de matèries primeres. Curs 2007-2008

    OpenAIRE

    Universitat de Barcelona. Facultat de Farmàcia

    2007-01-01

    Pla docent de l'assignatura Producció de matèries primeres de l'Ensenyament de Ciència i Tecnologia dels Aliments. Curs acadèmic 2007-2008. Departament de Productes Naturals, Biologia Vegetal i Edafologia.

  4. Producció de matèries primeres. Curs 2008-2009

    OpenAIRE

    Universitat de Barcelona. Facultat de Farmàcia

    2008-01-01

    Pla docent de l'assignatura Producció de matèries primeres de l'Ensenyament de Ciència i Tecnologia dels Aliments. Curs acadèmic 2008-2009. Departament Productes Naturals, Biologia Vegetal i Edafologia.

  5. Producció de matèries primeres. Curs 2006-2007

    OpenAIRE

    Universitat de Barcelona. Facultat de Farmàcia

    2006-01-01

    Pla docent de l'assignatura Producció de matèries primeres de l'Ensenyament de Ciència i Tecnologia dels Aliments. Curs acadèmic 2006-2007. Departaments de Productes Naturals, Biologia Vegetal i Edafologia (UB)/ Ciència animal i dels Aliments (UAB)

  6. Producció de matèries primeres. Curs 2005-2006

    OpenAIRE

    Universitat de Barcelona. Facultat de Farmàcia

    2005-01-01

    Pla docent de l'assignatura Producció de matèries primeres de l'Ensenyament de Ciència i Tecnologia dels Aliments. Curs acadèmic 2005-2006. Departament de Productes Naturals, Biologia Vegetal i Edafologia.

  7. Organic matter degradation drives benthic cyanobacterial mat abundance on caribbean coral reefs

    NARCIS (Netherlands)

    Brocke, Hannah J.; Polerecky, Lubos; De Beer, Dirk; Weber, Miriam; Claudet, Joachim; Nugues, Maggy M.

    2015-01-01

    Benthic cyanobacterial mats (BCMs) are impacting coral reefs worldwide. However, the factors and mechanisms driving their proliferation are unclear. We conducted a multi-year survey around the Caribbean island of Curaçao, which revealed highest BCM abundance on sheltered reefs close to urbanised are

  8. The Use of Maltodextrin Matrices to Control the Release of Minerals from Fortified Maté

    Directory of Open Access Journals (Sweden)

    Miguel E. Schmalko

    2012-04-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE The aim of this research was to study the sensorial acceptance of a fortified food containing different minerals (calcium, magnesium and iron and to determine the actual quantities present (bioaccessibility when extracted in maté. A sensorial analysis was performed to compare sensorial quality of fortified and non-fortified maté. Although panelists identified differences between the fortified and non-fortified maté, only 3% of them commented on an unpleasant flavor. Sequential extraction assays were performed simulating maté consumption under laboratory conditions. Profile concentration diminished sharply after the second extraction. Magnesium was found to be completely extracted in the first 500 mL. Calcium and Iron were extracted in a very low percentage (29% and 25%, respectively. The outlet rate of the minerals was fitted to two models, and a good fitness (p < 0:001 in all cases was obtained.

  9. Spatial and temporal changes in phosphorus partitioning within a freshwater cyanobacterial mat community

    Czech Academy of Sciences Publication Activity Database

    Borovec, Jakub; Sirová, D.; Mošnerová, Petra; Rejmánková, E.; Vrba, J.

    2010-01-01

    Roč. 101, 1-3 (2010), s. 323-333. ISSN 0168-2563 R&D Projects: GA MZe(CZ) QH81012 Institutional research plan: CEZ:AV0Z60170517; CEZ:AV0Z60050516 Keywords : phosphorus partitioning * cyanobacterial mat * diurnal changes * sequential fractionation * EPS Subject RIV: DA - Hydrology ; Limnology Impact factor: 2.674, year: 2010

  10. A Cyanine Dye Encapsulated Porous Fibrous Mat for Naked-Eye Ammonia Sensing.

    Science.gov (United States)

    Ji, Chendong; Ma, Lijing; Yin, Meizhen; Yang, Wantai; Pan, Kai

    2016-08-19

    Electrospun ultrathin fiber-based sensors are desirable because of their practicality and sensitivity. Ammonia-detection systems are in high demand in different areas, including the industrial and agricultural fields. However, current technologies rely on large and complex instruments that restrict their actual utilization. Herein, we report a flexible naked-eye ammonia sensor, the polylactic acid-cyanine (PLA-Cy) fibrous mat, which was fabricated by blending a carboxyl-functionalized cyanine dye (D1) into electospun PLA porous fibers. The sensing mat was shown to undergo a naked-eye-detectable color change from white to blue upon exposure to ammonia vapor. The mat showed high selectivity to ammonia gas with a detection limit of 3.3 ppm. Aggregated D1 was first encapsulated by PLA and was then ionized by NH3 . These mechanisms were examined by photophysical studies and scanning electron microscopy. The aggregation-deaggregation process of D1 in the PLA-Cy fibrous mat led to the color change. This work provides a facile method for the naked-eye detection of ammonia and a novel strategy for the use of organic dyes in ammonia sensing. PMID:27411059

  11. Potentiality evaluation of the MAT 250 UF mass spectrometer for general analysis

    International Nuclear Information System (INIS)

    This work presents a study on the potentiality of the MAT 250 UF mass spectrometer. It was formerly used only, for uranium isotopic analysis. It will be used, flow now on, also for the analysis of other gases such as deuterium, helium and hydrogen, as well. (A.C.A.S.)

  12. Nitrogen fixation in a non-heterocystous cyanobacterial mat from a mountain river

    Science.gov (United States)

    Berrendero, Esther; Valiente, Eduardo Fernández; Perona, Elvira; Gómez, Claudia L.; Loza, Virginia; Muñoz-Martín, M. Ángeles; Mateo, Pilar

    2016-08-01

    In situ nitrogen fixation was investigated in a cyanobacterial mat growing on the bed of rocks of the Muga River, Spain. The filamentous non-heterocystous cyanobacterium Schizothrix dominated the mat, showing nitrogenase activity in the light at similar rates to those found in nearby heterocystous Rivularia colonies. N2 fixation in the light was significantly increased by an inhibitor of PSII and oxygen evolution, DCMU (3-[3,4-dichlorophenyl]-1,1-dimethylurea), and anaerobic conditions. However, no nitrogenase activity was found in the dark. Addition of fructose as a respiratory substrate induced nitrogenase activity in samples incubated under aerobic conditions in the dark but not in anaerobic conditions. Microelectrode oxygen profiles showed internal microaerobic microzones where nitrogen fixation might concentrate. Analyses of the 16S rRNA gene revealed only the presence of sequences belonging to filamentous non-heterocystous cyanobacteria. nifH gene diversity showed that the major phylotypes also belonged to this group. One of the three strains isolated from the Schizothrix mat was capable of fixing N2 and growing in the absence of combined N. This was consistent with the nifH gene analysis. These results suggest a relevant contribution of non-heterocystous cyanobacteria to nitrogen fixation in these mats.

  13. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential

    DEFF Research Database (Denmark)

    Klatt, C. G.; Wood, J. M.; Rusch, D. B.;

    2011-01-01

    Phototrophic microbial mat communities from 60¿°C and 65¿°C regions in the effluent channels of Mushroom and Octopus Springs (Yellowstone National Park, WY, USA) were investigated by shotgun metagenomic sequencing. Analyses of assembled metagenomic sequences resolved six dominant chlorophototrophic...

  14. Base mat uplift effects on the seismic response of a rectangular nuclear building

    International Nuclear Information System (INIS)

    This contribution presents results of a seismic analysis of a rectangular building subjected to an earthquake in its weak direction with special regard to nonlinear base mat uplift effects. A nuclear power plant switchgear building, is assumed to be located in the Upper Rhine Graben, which belongs to the highest German earthquake zones. The peak ground acceleration based is 0.3 g. A linear earthquake analysis predicted that more than 50% of the area of the base mat would uplift off the supporting soil. For the state of maximum uplift conditions, a static analysis of the building subjected to the gravity loads of the lifted-off building parts would lead to high shear and tensile forces in the concrete walls, which would require an extreme amount of reinforcement. A nonlinear earthquake analysis was performed considering the nonlinear relationship - overturning moment vs. base rotation - in order to give an adequate estimate of the amount of base mat uplift and internal forces in the walls. Nonlinearities due to the decreasing contact area between base mat and soil were considered taking also into account the time-dependency of the vertical load component due to vertical vibrations. (orig./HP)

  15. Acquisition systems and data elaboration for Varian Mat 1129 mass spectrometers

    International Nuclear Information System (INIS)

    The data acquisition equipment to be described is used to capture data deriving from the Varian Mat 1125 mass spectrometer. It is based on a system controlled by the microprocessor 8085 and was designed with the aim of advantegeously replacing the photosensitive paper recorder used originally. (Author)

  16. Efficiency of DNA barcodes for species delimitation: A case in Pterygiella Oliv.(Orobanchaceae)

    Institute of Scientific and Technical Information of China (English)

    Li-Na DONG; Alexandra H. WORTLEY; Hong WANG; De-Zhu LI; Lu LU

    2011-01-01

    DNA barcoding is becoming an increasingly popular means to identify species. The obscure discrimination in the genus Pterygiella calls into question the re-assessment of the criterion for species delimitation. We collected 20 individuals, representing all five described species of this genus in its distributional range. The aim was to use three proposed barcode DNA regions (rbcL, matK, and ITS) to diagnose Pterygiella species, and examine which barcode is more suitable for discerning the congeneric and related species. The results showed that the core barcodes matK and rbcL were comparatively less effective. However, the ITS region, especially ITS-1and ITS-2, successfully identified all species in the genus. Furthermore, the secondary structure of ITS-2 RNA, especially compensatory base changes, appears complementary to classical primary sequence analysis for DNA barcoding.

  17. Microbial mats of the Tswaing impact crater: results of a South African exobiology expedition and implications for the search for biological molecules on Mars

    OpenAIRE

    Cockell, C. S.; Brandt, D. (Dieter); Hand, K.; Lee, P C

    2001-01-01

    We describe microbial mats from the Tswaing impact crater in South Africa. The mats provide insights into the unique biological characteristics of impact craters and can help strategies for the search for biomolecules on Mars.

  18. DNA barcoding in closely related species: A case study of Primula L.sect.Proliferae Pax (Primulaceae) in China

    Institute of Scientific and Technical Information of China (English)

    Hai-Fei YAN; Gang HAO; Chi-Ming HU; Xue-Jun GE

    2011-01-01

    DNA barcoding is a method of identifying species by analyzing one or a few short standardized DNA sequences. There are particular challenges in barcoding plants, especially for distinguishing closely related species. Hence, there is an urgent need to evaluate the performance of candidate loci for distinguishing between species, especially closely related species, to complement the rbcL + matK combination suggested as the core barcode for land plants. We sampled 48 individuals representing 12 species in Primula sect. Proliferae Pax in China to evaluate the performance of eight leading candidate barcode loci (matK, rbcL, rpoB, rpoCl, trnH-psbA, psbK-psbI, atpFatpH, and internal transcribed spacer (ITS)). The core combination rbcL + matK gave only 50% species resolution in sect. Proliferae. In terms of intraspecies and interspecies divergence, degree of monophyly, and sequence similarity, ITS, trnH-psbA, and psbK-psbI showed good performance as single-locus barcodes. Internal transcribed spacer displayed the highest genetic divergence and best discriminatory power, both alone and in combination with rbcL +matK (83.3% species resolution). We recommend evaluating the use of ITS for barcoding in other species. Low or single copy nuclear regions would provide more sophisticated barcoding tools in the long term, even though further research is required to find suitable loci.

  19. A Biofilm Treatment Approach for Produced Water from Hydraulic Fracturing Using Engineered Microbial Mats

    Science.gov (United States)

    Akyon, B.; Stachler, E.; Bibby, K. J.

    2015-12-01

    Hydraulic fracturing results in large volumes of wastewater, called "produced water". Treatment of produced water is challenged by its high salt, organic compound, and radionuclide concentrations. Current disposal approaches include deep well injection and physical-chemical treatment for surface disposal; however, deep well injection has been recently linked to induced seismicity and physical-chemical treatments suffer from fouling and high cost. The reuse of the produced water has emerged as a desirable management option; however, this requires pretreatment to generate a water of usable quality and limit microbial activity. Biological treatment is an underexplored area in produced water management and has the potential to remove organics and reduce overall costs for physiochemical treatment or reuse. Suspended growth biological treatment techniques are known to be limited by salinity motivating a more robust biofilm approach: 'microbial mats'. In this study, we used engineered microbial mats as a biofilm treatment for the produced water. Evaluation of the biodegradation performance of microbial mats in synthetic and real produced waters showed microbial activity at up to 100,000 mg/L TDS concentration (three times the salt concentration of the ocean). Organic removal rates reached to 1.45 mg COD/gramwet-day at 91,351 mg/L TDS in real produced water samples and initial evaluation demonstrated the potential for field-scale application. Metagenomic analyses of microbial mats demonstrated an adaptive shift in the microbial community treating different samples, suggesting the wide applicability of this treatment approach for produced waters with varying chemical composition. On-going studies focus on the evaluation of the removal of the organics and the contaminants of high concern in produced water using microbial mats as well as the effect of the biofilm growth conditions on the biodegradation in changing salt concentrations.

  20. Learning Geomicrobiology as a Team Using Microbial Mats, a Multidisciplinary Approach

    Directory of Open Access Journals (Sweden)

    Carlos Rios-Velazquez

    2009-12-01

    Full Text Available Microbial mats are one of the best suited laminar organo-sedimentary ecosystems for students from different educational backgrounds to visualize the direct relationship between microbes and minerals. We have used tropical hypersaline microbial mats from Puerto Rico as educational tools to promote active learning of geomicrobiology introductory concepts for undergraduate students organized in multidisciplinary teams with biological and geological backgrounds. Besides field trips and independent research projects focused on microbial mats, four intensive workshops and one capstone activity were designed to expose students to the different geomicrobiology subdisciplines (microbiology, molecular biology, geology, and geochemistry. The teaching-learning process was assessed using pre- and posttests, group discussions, activities including Gallery Walks and exquisite cadaver’s, case studies, and focal interviews. While the posttest showed a significant difference in conceptual understanding, the Gallery Walk and the capstone activities demonstrated increase in the depth, coherence, and thoughtfulness in answering questions, including a clear integration of the different subdisciplines during their presentations. Finally, the main themes described by the students as important outcomes of their participation in the Research at Undergraduate Institutions: Microbial Observatory (RUI-MO program were: (i the opportunity to study and learn new and different science disciplines, (ii the microbial mats were excellent tools to learn from and integrate different science disciplines, and (iii working in multidisciplinary teams gave them the opportunity to learn from their peers’ discipline backgrounds. To our knowledge this is the first educational initiative that uses tropical hypersaline microbial mats to teach geomicrobiology in a multidisciplinary fashion.

  1. Learning Geomicrobiology as a Team Using Microbial Mats, a Multidisciplinary Approach

    Directory of Open Access Journals (Sweden)

    Pieter T. Visscher

    2007-12-01

    Full Text Available Microbial mats are one of the best suited laminar organo-sedimentary ecosystems for students from different educational backgrounds to visualize the direct relationship between microbes and minerals. We have used tropical hypersaline microbial mats from Puerto Rico as educational tools to promote active learning of geomicrobiology introductory concepts for undergraduate students organized in multidisciplinary teams with biological and geological backgrounds. Besides field trips and independent research projects focused on microbial mats, four intensive workshops and one capstone activity were designed to expose students to the different geomicrobiology subdisciplines (microbiology, molecular biology, geology, and geochemistry. The teaching-learning process was assessed using pre- and posttests, group discussions, activities including Gallery Walks and exquisite cadaver’s, case studies, and focal interviews. While the posttest showed a significant difference in conceptual understanding, the Gallery Walk and the capstone activities demonstrated increase in the depth, coherence, and thoughtfulness in answering questions, including a clear integration of the different subdisciplines during their presentations. Finally, the main themes described by the students as important outcomes of their participation in the Research at Undergraduate Institutions: Microbial Observatory (RUI-MO program were: (i the opportunity to study and learn new and different science disciplines, (ii the microbial mats were excellent tools to learn from and integrate different science disciplines, and (iii working in multidisciplinary teams gave them the opportunity to learn from their peers’ discipline backgrounds. To our knowledge this is the first educational initiative that uses tropical hypersaline microbial mats to teach geomicrobiology in a multidisciplinary fashion.

  2. Quantitative Relationships between Photosynthetic, Nitrogen Fixing, and Fermentative H2 Metabolism in a Photosynthetic Microbial Mat

    Science.gov (United States)

    Hoehler, Tori M.; Albert, Daniel B.; Bebout, Brad M.; Turk, Kendra A.; DesMarais, David J.

    2004-01-01

    The ultimate potential of any microbial ecosystem to contribute chemically to its environment - and therefore, to impact planetary biogeochemistry or to generate recognizable biosignatures - depends not only on the individual metabolic capabilities of constituent organisms, but also on how those capabilities are expressed through interactions with neighboring organisms. This is particularly important for microbial mats, which compress an extremely broad range of metabolic potential into a small and dynamic system. H2 participates in many of these metabolic processes, including the major elemental cycling processes of photosynthesis, nitrogen fixation, sulfate reduction, and fermentation, and may therefore serve as a mediator of microbial interactions within the mat system. Collectively, the requirements of energy, electron transfer, and biomass element stoichiometry suggest quantitative relationships among the major element cycling processes, as regards H2 metabolism We determined experimentally the major contributions to 32 cycling in hypersaline microbial mats from Baja California, Mexico, and compared them to predicted relationships. Fermentation under dark, anoxic conditions is quantitatively the most important mechanism of H2 production, consistent with expectations for non-heterocystous mats such as those under study. Up to 16% of reducing equivalents fixed by photosynthesis during the day may be released by this mechanism. The direct contribution of nitrogen fixation to H2 production is small in comparison, but this process may indirectly stimulate substantial H2 generation, by requiring higher rates of fermentation. Sulfate reduction, aerobic consumption, diffusive and ebulitive loss, and possibly H2-based photoreduction of CO2 serve as the principal H2 sinks. Collectively, these processes interact to create an orders-of-magnitude daily variation in H2 concentrations and fluxes, and thereby in the oxidation-reduction potential that is imposed on microbial

  3. Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures

    Science.gov (United States)

    Ward, D. M.; Santegoeds, C. M.; Nold, S. C.; Ramsing, N. B.; Ferris, M. J.; Bateson, M. M.

    1997-01-01

    We have begun to examine the basis for incongruence between hot spring microbial mat populations detected by cultivation or by 16S rRNA methods. We used denaturing gradient gel electrophoresis (DGGE) to monitor enrichments and isolates plated therefrom. At near extincting inoculum dilutions we observed Chloroflexus-like and cyanobacterial populations whose 16S rRNA sequences have been detected in the 'New Pit' Spring Chloroflexus mat and the Octopus Spring cyanobacterial mat. Cyanobacterial populations enriched from 44 to 54 degrees C and 56 to 63 degrees C samples at near habitat temperatures were similar to those previously detected in mat samples of comparable temperatures. However, a lower temperature enrichment from the higher temperature sample selected for the populations found in the lower temperature sample. Three Thermus populations detected by both DGGE and isolation exemplify even more how enrichment may bias our view of community structure. The most abundant population was adapted to the habitat temperature (50 degrees C), while populations adapted to 65 degrees C and 70 degrees C were 10(2)- and 10(4)-fold less abundant, respectively. However, enrichment at 70 degrees C favored the least abundant strain. Inoculum dilution and incubation at the habitat temperature favored the more numerically relevant populations. We enriched many other aerobic chemoorganotrophic populations at various inoculum dilutions and substrate concentrations, most of whose 16S rRNA sequences have not been detected in mats. A common feature of numerically relevant cyanobacterial, Chloroflexus-like and aerobic chemorganotrophic populations, is that they grow poorly and resist cultivation on solidified medium, suggesting plating bias, and that the medium composition and incubation conditions may not reflect the natural microenvironments these populations inhabit.

  4. Measuring the efficacy of flunixin meglumine and meloxicam for lame sows using a GAITFour pressure mat and an embedded microcomputer-based force plate system.

    Science.gov (United States)

    Pairis-Garcia, M D; Johnson, A K; Abell, C A; Coetzee, J F; Karriker, L A; Millman, S T; Stalder, K J

    2015-05-01

    Pain associated with lameness on farm is a negative affective state and has a detrimental impact on individual farm animal welfare. Animal pain can be managed utilizing husbandry tools and through pharmacological approaches. Nonsteroidal anti-inflammatory drugs including meloxicam and flunixin meglumine are compounds used in many species for pain management because they are easy to administer, long lasting, and cost-effective. Assessing an animal's biomechanical parameters using such tools as the embedded microcomputer-based force plate system and GAITFour pressure mat gait analysis walkway system provides an objective, sensitive, and precise means to detect animals in lame states. The objectives of this study were to determine the efficacy of meloxicam and flunixin meglumine for pain mitigation in lame sows using the embedded microcomputer-based force plate system and GAITFour pressure mat gait analysis walkway system. Lameness was induced in 24 mature mixed-parity sows using a chemical synovitis model and compared 3 treatments: meloxicam (1.0 mg/kg per os), flunixin meglumine (2.2 mg/kg intramuscular) and sterile saline (intramuscular). Weight distribution (kg) for each foot was collected twice per second for a total of 5 min for each time point using the embedded microcomputer-based force plate system. Stride time, stride length, maximum pressure, activated sensors, and stance time were collected using 3 quality walks (readings) for each time point using the GAITFour pressure mat gait analysis walkway system. Sows administered flunixin meglumine or meloxicam tolerated more weight on their lame leg compared with saline sows (P Sows administered flunixin meglumine or meloxicam had smaller differences in stance time, maximum pressure, and activated sensors between the sound and lame legs compared with saline-treated sows between 37 and 60 h after lameness induction (P sows after lameness induction when pain sensitivity was evaluated with the embedded microcomputer

  5. Risk Factors Analysis Associated with Seropositivity to Toxoplasma gondii in Sheep and Goats in Southeastern Iran Using Modified Agglutination Test (MAT

    Directory of Open Access Journals (Sweden)

    N Zia-Ali

    2008-04-01

    Full Text Available Background: Toxoplasma gondii infection is widely prevalent in many species of warm-blooded animals including human. The aim of this study was to determine the prevalence of antibodies to T. gondii from slaughtered sleep and goats by mod­ified agglutination test (MAT in Kerman region, southeastern Iran. Methods: Altogether 1340 blood samples were collected from 562 sheep and 778 goats from April to September 2005 in Kerman slaughterhouse. The sera were examined for T. gondii antibodies by MAT using an antibody titer of 1:20 or higher considered positive. The statistical analysis was performed by chi-square test and logistic regressions to analyze the influ­ence of all examined factor (age, sex and type of animals on seroprevalence of toxoplasmosis.Results: Antibodies were found in sera of 262 out of 1340 (19.6% samples. of 262 seropositive sera, 139 sheep (24.7% and 123 goats (15.8% were infected. Seropositive animals more than one year were 1.6 times more likely to be seropositive than the others were. Sheep were 1.5 times more likely to be infected than goats were (OR=1.53, 95% CI=1.15-2.04, p=0.004.Conclusion: Serological results indicated a widespread exposure to T. gondii among sheep and goats slaughtered in Kerman region and suggest that consumption of raw and undercooked meat of these animals can be a probable source of human toxoplasmosis.

  6. DNA barcoding in Atlantic Forest plants: what is the best marker for Sapotaceae species identification?

    Directory of Open Access Journals (Sweden)

    Caio Vinicius Vivas

    2014-12-01

    Full Text Available The Atlantic Forest is a phytogeographic domain with a high rate of endemism and large species diversity. The Sapotaceae is a botanical family for which species identification in the Atlantic Forest is difficult. An approach that facilitates species identification in the Sapotaceae is urgently needed because this family includes threatened species and valuable timber species. In this context, DNA barcoding could provide an important tool for identifying species in the Atlantic Forest. In this work, we evaluated four plant barcode markers (matK, rbcL, trnH-psbA and the nuclear ribosomal internal transcribed spacer region -ITS in 80 samples from 26 species of Sapotaceae that occur in the Atlantic Forest. ITS yielded the highest average interspecific distance (0.122, followed by trnH-psbA (0.019, matK (0.008 and rbcL (0.002. For species discrimination, ITS provided the best results, followed by matK, trnH-psbA and rbcL. Furthermore, the combined analysis of two, three or four markers did not result in higher rates of discrimination than obtained with ITS alone. These results indicate that the ITS region is the best option for molecular identification of Sapotaceae species from the Atlantic Forest.

  7. Succession in a microbial mat community: A gaian perspective

    Science.gov (United States)

    Stolz, J. F.

    The Gaia hypothesis originally proposed by James E. Lovelock states that the composition, oxidation-reduction state and temperature of the troposphere are actively regulated by the activities of the biota. The gaian concept has been extrapolated to include the composition of surface sediments through the process of biomineralization. The stratified microbial community dominated by the cyanobacterium Microcoleus chthonoplastes is actively involved in the deposition of laminated sediments at Laguna Figueroa, Baja California, Mexico. Unusually heavy rains in the winters of 1979 and 1980 flooded the evaporite flat with up to 3 meters of meteoric water and deposited 5 - 10 cm of allocthonous sediment. The composition of the microbial community changed as a succession of dominating microbial species ensued, ultimately leading to the recolonization of the surface sediment by the original Microcoleus-dominated community. The resiliency of bacterial communities is suggested to be an important mechanism of gaian control systems. Present address: Control and Energy Conversion Division, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, U.S.A.

  8. Statistical Analysis of Charpy Transition Temperature Shift in Reactor Pressure Vessel Steels: Application of Nuclear Materials Database(MatDB)

    International Nuclear Information System (INIS)

    The MDPortal contains various technical documents on the degradation and development of nuclear materials. Additionally, the nuclear materials database (MatDB) is also launched in KAERI recently. The MatDB covers the mechanical properties of various nuclear structural materials used as the components: a reactor pressure vessel, steam generator, and primary and secondary piping. In this study, we introduced MatDB briefly, and analyzed the Charpy transition temperature shift in reactor pressure vessel steels of Korean nuclear power plants retrieved from MatDB. It can show an application of the MatDB to the real case of material degradations in NPPs. The MatDB includes the tensile results, Charpy results, fatigue results and J-R curve results at present. In the future other properties such as creep, fracture toughness, and SCC degradations are going to be added consistently. The data from MatDB were successfully applied to estimate the TTS analysis of Korean RPV steels in surveillance tests

  9. Modifying landing mat material properties may decrease peak contact forces but increase forefoot forces in gymnastics landings.

    Science.gov (United States)

    Mills, Chris; Yeadon, Maurice R; Pain, Matthew T G

    2010-09-01

    This study investigated how changes in the material properties of a landing mat could minimise ground reaction forces (GRF) and internal loading on a gymnast during landing. A multi-layer model of a gymnastics competition landing mat and a subject-specific seven-link wobbling mass model of a gymnast were developed to address this aim. Landing mat properties (stiffness and damping) were optimised using a Simplex algorithm to minimise GRF and internal loading. The optimisation of the landing mat parameters was characterised by minimal changes to the mat's stiffness (<0.5%) but increased damping (272%) compared to the competition landing mat. Changes to the landing mat resulted in reduced peak vertical and horizontal GRF and reduced bone bending moments in the shank and thigh compared to a matching simulation. Peak bone bending moments within the thigh and shank were reduced by 6% from 321.5 Nm to 302.5Nm and GRF by 12% from 8626 N to 7552 N when compared to a matching simulation. The reduction in these forces may help to reduce the risk of bone fracture injury associated with a single landing and reduce the risk of a chronic injury such as a stress fracture. PMID:21162361

  10. Fabrication of Pamidronic Acid-Immobilized TiO2/Hydroxyapatite Composite Nanofiber Mats for Biomedical Applications

    Directory of Open Access Journals (Sweden)

    Yong-Suk Shin

    2013-01-01

    Full Text Available TiO2/hydroxyapatite (TiO2/HA composite nanofiber mats were fabricated using an electrospinning technique. Subsequently, pamidronic acid (PDA was immobilized on the surface of the TiO2/HA nanofiber mat to improve osseointegration. X-ray photoelectron microscopy and scanning electron microscopy (SEM were used to characterize the structure and morphology of the PDA-immobilized TiO2/HA composite nanofiber mat (TiO2/HA-P. The potential of TiO2/HA-P as a bone scaffold was assessed by examining the cell adhesion and proliferation of osteoblasts and osteoclasts. The adhesion and proliferation of osteoblasts on the TiO2/HA-P composite nanofiber mat were slightly higher than those on the TiO2/HA composite nanofiber mat, whereas the viability of osteoclasts on the TiO2/HA-P nanofiber mat was significantly suppressed. These results suggest that the TiO2/HA-P nanofiber mat has the potential for use as a therapeutic bone implant.

  11. Phototrophic Biofilm Assembly in Microbial-Mat-Derived Unicyanobacterial Consortia: Model Systems for the Study of Autotroph-Heterotroph Interactions

    Energy Technology Data Exchange (ETDEWEB)

    Cole, Jessica K.; Hutchison, Janine R.; Renslow, Ryan S.; Kim, Young-Mo; Chrisler, William B.; Engelmann, Heather E.; Dohnalkova, Alice; Hu, Dehong; Metz, Thomas O.; Fredrickson, Jim K.; Lindemann, Stephen R.

    2014-04-07

    Though microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, the diversity and complexity of natural systems and their intractability to in situ environmental manipulation makes elucidation of the principles governing these interactions challenging. Examination of primary succession during phototrophic biofilm assembly provides a robust means by which to elucidate the dynamics of such interactions and determine their influence upon recruitment and maintenance of phylogenetic and functional diversity in microbial communities. We isolated and characterized two unicyanobacterial consortia from the Hot Lake phototrophic mat, quantifying the structural and community composition of their assembling biofilms. The same heterotrophs were retained in both consortia and included members of Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes, taxa frequently reported as consorts of microbial photoautotrophs. Cyanobacteria led biofilm assembly, eventually giving way to a late heterotrophic bloom. The consortial biofilms exhibited similar patterns of assembly, with the relative abundances of members of Bacteroidetes and Alphaproteobacteria increasing and members of Gammaproteobacteria decreasing as colonization progressed. Despite similar trends in assembly at higher taxa, the consortia exhibited substantial differences in community structure at the species level. These similar patterns of assembly with divergent community structures suggest that, while similar niches are created by the metabolism of the cyanobacteria, the resultant webs of autotroph-heterotroph and heterotroph-heterotroph interactions driving metabolic exchange are specific to each primary producer. Altogether, our data support these Hot Lake unicyanobacterial consortia as generalizable model systems whose simplicity and tractability permit the deciphering of community assembly principles relevant to natural microbial communities.

  12. Seasonal variation in evapotranspiration from mat rush grown in paddy field

    International Nuclear Information System (INIS)

    Evapotranspiration from mat rush (Juncus effusus L.) was observed using the Bowen ratio method based on heat balance in a commercial paddy field located on the Yatsushiro Plain (32° 33.9′N, 130° 38.4′E, 1 m above sea level). Observations were conducted from transplanting (December) to harvest (July) in 1999/2000 (2000 season) and 2000/2001 (2001 season). Seasonal variation of evapotranspiration (E) showed an increasing trend with air temperature and solar radiation. Average and total values of E during the entire growth period in the 2000 and 2001 seasons were 2.02, 2.16 mm day-1 and 491, 499 mm, respectively. Daily mean values of E were compared with the reference crop evapotranspiration (E0) and potential evaporation (EP). Seasonal variations of E/E0 showed an increasing trend from 0.46 to 1.00 during the growth of mat rush. Similarly, E/EP showed an increasing trend from 0.42 to 0.84 during the growth of mat rush. E/E0 and E/EP of mat rush could be expressed as a function of plant area index (PAI). Root mean square error (RMSE) of estimating E using the function was 0.5 mm day-1 on a 1-day scale, 0.2 mm day-1 on a 5-day scale and 0.1 mm day-1 on a 10-day scale. Variations in E/E0 and E/EP were conjectured to be also influenced by soil moisture, wind speed and saturation deficit as the result of change in transpiration from mat rush. However, it was difficult to explain the difference in E/E0 and E/EP that was found between 2000 and 2001 seasons, based only on the difference in environmental factors described above. It was suggested that the difference in the physiological activity of the mat rush, which was indicated by differences in stem color between 2000 and 2001 seasons, affected the E/E0 and E/EP. (author)

  13. Phylogenetic Evidence for the Existence of Novel Thermophilic Bacteria in Hot Spring Sulfur-Turf Microbial Mats in Japan

    OpenAIRE

    Yamamoto, Hiroyuki; Hiraishi, Akira; Kato, Kenji; Chiura, Hiroshi X.; Maki, Yonosuke; Shimizu, Akira

    1998-01-01

    So-called sulfur-turf microbial mats, which are macroscopic white filaments or bundles consisting of large sausage-shaped bacteria and elemental sulfur particles, occur in sulfide-containing hot springs in Japan. However, no thermophiles from sulfur-turf mats have yet been isolated as cultivable strains. This study was undertaken to determine the phylogenetic positions of the sausage-shaped bacteria in sulfur-turf mats by direct cloning and sequencing of 16S rRNA genes amplified from the bulk...

  14. Effects of algae-mat thickness on survival and growth of eelgrass (Zostera marina) seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Olesen, Birgit

    eelgrass even short periods of water column anoxia may have severe implications for growth and survival. In addition, excessive covering by macroalgal mats decrease the available light at leaf surface and may hamper the diffusive movement of oxygen, inorganic carbon and nutrients to and from the shoot thus......: Chaetomorpha linum and artificial macroalgae. The two types of mats were used to separate physical and metabolic effects of algal presence. During the growth period concentrations of oxygen and sulphide and their diurnal variations in the mats were measured using microelectrodes....

  15. The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats

    DEFF Research Database (Denmark)

    Teske, Andreas; de Beer, Dirk; McKay, Luke J; Tivey, Margaret K; Biddle, Jennifer F; Hoer, Daniel; Lloyd, Karen G; Lever, Mark A; Røy, Hans; Albert, Daniel B; Mendlovitz, Howard P; MacGregor, Barbara J

    2016-01-01

    The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and...... selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediments show their steep geochemical and thermal gradients at millimeter-scale vertical resolution. Mapping these...... hydrothermal features and sampling locations within the southern Guaymas Basin suggest linkages to underlying shallow sills and heat flow gradients. Recognizing the inherent spatial limitations of much current Guaymas Basin sampling calls for comprehensive surveys of the wider spreading region....

  16. Nanostructured Polylactic Acid/Candeia Essential Oil Mats Obtained by Electrospinning

    Directory of Open Access Journals (Sweden)

    Cláudia L. S. de Oliveira Mori

    2015-01-01

    Full Text Available This work aims to evaluate the effect of inclusion of different contents of candeia (Eremanthus erythropappus essential oil (whose alpha-bisabolol is the main terpene on the properties of polylactic acid (PLA nanostructured mats and their relationship with fiber morphology and structure. The interaction occurring between the PLA and the candeia essential oil was confirmed by thermal and microscopy analysis. Addition of candeia essential oil increased nanofiber diameter and decreased the glass transition and melting temperatures of the nanofibers, suggesting lower energy input for processing. Scanning electron microscopy (SEM images provided evidence of a homogeneous structure for the nanostructured mats. X-ray diffraction did not show differences in the crystallization of the nanofibers. This ongoing research confirms the possibility of incorporation of candeia essential oil in the production of nanofibers that will be studied for multipurpose applications.

  17. Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp

    DEFF Research Database (Denmark)

    Nübel, Ulrich; Bateson, Mary M.; Madigan, Michael T.; Kühl, Michael; Ward, David M.

    2001-01-01

    primers for the specific amplification of 16S rRNA genes from filamentous phototrophic bacteria within the kingdom of "green nonsulfur bacteria." PCR products recovered from microbial mats in a saltern in Guerrero Negro, Mexico, were subjected to cloning or denaturing gradient gel electrophoresis and then......Filamentous bacteria containing bacteriochlorophylls c and a were enriched from hypersaline microbial mats. Based on phylogenetic analyses of 16S rRNA gene sequences, these organisms form a previously undescribed lineage distantly related to Chloroflexus spp. We developed and tested a set of PCR...... sequenced. We found evidence of a high diversity of bacteria related to Chloroflexus which exhibit different distributions along a gradient of salinity from 5.5 to 16%....

  18. MatSeis developer's guide:version 1.0.

    Energy Technology Data Exchange (ETDEWEB)

    McConnell, Lane Christopher; Young, Christopher John

    2007-05-01

    This guide is intended to enable researchers working with seismic data, but lacking backgrounds in computer science and programming, to develop seismic algorithms using the MATLAB-based MatSeis software. Specifically, it presents a series of step-by-step instructions to write four specific functions of increasing complexity, while simultaneously explaining the notation, syntax, and general program design of the functions being written. The ultimate goal is that that the user can use this guide as a jumping off point from which he or she can write new functions that are compatible with and expand the capabilities of the current MatSeis software that has been developed as part of the Ground-based Nuclear Explosion Monitoring Research and Engineering (GNEMRE) program at Sandia National Laboratories.

  19. Molecular Ecology of Hypersaline Microbial Mats: Current Insights and New Directions

    Directory of Open Access Journals (Sweden)

    Hon Lun Wong

    2016-01-01

    Full Text Available Microbial mats are unique geobiological ecosystems that form as a result of complex communities of microorganisms interacting with each other and their physical environment. Both the microorganisms present and the network of metabolic interactions govern ecosystem function therein. These systems are often found in a range of extreme environments, and those found in elevated salinity have been particularly well studied. The purpose of this review is to briefly describe the molecular ecology of select model hypersaline mat systems (Guerrero Negro, Shark Bay, S’Avall, and Kiritimati Atoll, and any potentially modulating effects caused by salinity to community structure. In addition, we discuss several emerging issues in the field (linking function to newly discovered phyla and microbial dark matter, which illustrate the changing paradigm that is seen as technology has rapidly advanced in the study of these extreme and evolutionally significant ecosystems.

  20. Mise au point de deux nouveaux matériaux à base de cobalt

    OpenAIRE

    CEA

    2014-01-01

    Des chercheurs du CEA, du CNRS, du Collège de France et de l’Université de Grenoble ont mis au point deux nouveaux matériaux à base de cobalt capables de remplacer le platine, métal rare et cher, dans la production d’hydrogène à partir d’eau (électrolyse). L’un peut fonctionner en solution aqueuse de pH neutre. Le second constitue le premier matériau catalytique « commutable » et sans métaux nobles jamais créé capable d’intervenir dans les deux réactions chimiques essentielles à l’électrolys...

  1. Premixed combustion of coke oven gas in a metallic fibre mat

    Energy Technology Data Exchange (ETDEWEB)

    Cho, K.W.; Han, K.; Lee, Y.K.; Noh, D.-S.; Yoon, H.M.; Riu, K.-J.; Lee, K.-H. [Research Institute of Industrial Science and Technology, Pohang (Republic of Korea). Energy Research Team

    2001-05-01

    Combustion characteristics of liquefied petroleum gas (LPG) and coke oven gas (COG) in a metallic fibre mat were investigated experimentally to examine the effect of fuel change on surface combustion performance. It was found that the upper limit of surface loads representing the radiant mode is increased in the case of COG combustion. Mat temperatures were slightly lowered for COG combustion at low surface loads. The surface load showing the maximum surface temperature was shifted to a higher one for COG combustion. It was concluded that the range of surface loads for radiant mode combustion and the surface load for the peak surface temperature are mainly dependent upon the flame speed of the fuel used. Short communication. 13 refs., 3 figs., 1 tab.

  2. Transparent conducting film: Effect of mechanical stretching to optical and electrical properties of carbon nanotube mat

    Indian Academy of Sciences (India)

    Tsuyoshi Saotome; Hansang Kim; David Lashmore; H Thomas Hahn

    2011-07-01

    We describe in this paper a transparent conducting film (TCF). It is a fibrous layer of multiwalled carbon nanotubes (MWNTs), labeled a dilute CNT mat, that was prepared and unidirectionally stretched to improve both the optical and electrical properties. After stretching by 80% strain, transmittance at 550 nm wavelength was improved by 37% and sheet resistance was reduced to 71% of the original value. The improvement of the transmittance can be explained by increased area of the CNT mat after stretch, and the reduced sheet resistance can be explained by increased density of the CNT alignment in lateral direction due to contraction. Based on the microscopic observation before and after stretch, models to describe the phenomena are proposed. By further expanding on this method, it may be possible to obtain a transparent conducting carbon nanotube film which is crack-resistant for solar cell applications.

  3. Rhéologie des pâtes et des matériaux granulaires

    OpenAIRE

    LABORATOIRE CENTRAL DES PONTS ET CHAUSSEES - LCPC

    2006-01-01

    Recueil de huit articles synthétiques, ce rapport constitue un bilan de recherches coordonnées des laboratoires des ponts et chaussées, au cours des années 2002-2005, sur les matériaux du génie civil, dont la rhéologie est mal comprise, susceptibles de comportements " solides " ou " liquides " : les pâtes (comme les ciments frais) et les assemblages granulaires (sols pulvérulents, granulats, poudres), éventuellement liés (cas des matériaux de chaussées).Y sont présentés les récents progrès da...

  4. Rhéologie des pâtes et des matériaux granulaires

    OpenAIRE

    LABORATOIRE CENTRAL DES PONTS ET CHAUSSEES - LCPC

    2006-01-01

    Recueil de huit articles synthétiques, ce rapport constitue un bilan de recherches coordonnées des laboratoires des ponts et chaussées, au cours des années 2002-2005, sur les matériaux du génie civil, dont la rhéologie est mal comprise, susceptibles de comportements "solides" ou " liquides" : les pâtes (comme les ciments frais) et les assemblages granulaires (sols pulvérulents, granulats, poudres), éventuellement liés (cas des matériaux de chaussées). Y sont présentés les récents progrès dans...

  5. Response of mat conditions and flakeboard properties to steam- injection variables

    OpenAIRE

    Johnson, Stephen E.

    1990-01-01

    Mat conditions of temperature and gas pressure were measured in three locations for one conventional and four steam-injection press schedules used in the laboratory scale manufacture of aspen (Populus grandidentata and Populus tremuloides) flakeboard. Two resins, phenol formaldehyde and polymeric MDI, were used. Steam-injection press schedules varied from low steam input to high steam input by adjusting steam pressure, steam time, and the density range for steam-inject...

  6. Fabrication and Characterization of Electrospun Polycaprolactone Blended with Chitosan-Gelatin Complex Nanofibrous Mats

    OpenAIRE

    Yongfang Qian; Zhen Zhang; Laijiu Zheng; Ruoyuan Song; Yuping Zhao

    2014-01-01

    Design and fabrication of nanofibrous scaffolds should mimic the native extracellular matrix. This study is aimed at investigating electrospinning of polycaprolactone (PCL) blended with chitosan-gelatin complex. The morphologies were observed from scanning electron microscope. As-spun blended mats had thinner fibers than pure PCL. X-ray diffraction was used to analyze the degree of crystallinity. The intensity at two peaks at 2θ of 21° and 23.5° gradually decreased with the percentage of chit...

  7. The MATS experiments - mesoscale atmospheric transport studies at the Savannah River Site

    International Nuclear Information System (INIS)

    An overview of the Mesoscale Atmospheric Transport Studies (MATS) program is presented. MATS was an experimental program to create a data base for short-term atmospheric releases to study mesoscale atmospheric dispersion over gently rolling terrain at the Savannah River Site (SRS). Thirty-one experiments were performed over a 3-year period under daytime convective conditions using 15-minute releases of sulfur hexafluoride (SF6) tracer. Dispersion was typically measured along an arc of stationary samplers approximately 30 km downwind. Four nighttime experiments were performed with SF6 releases, and sampling was carried on for a few hours with a mobile sampling laboratory. The mobile laboratory repeatedly traversed the plume while recording tracer concentration, time, and location. Supporting meteorological data for the MATS experiments included wind and temperature measurements from an integrated meteorological tower network and computer system. The tower network consists of eight instrumented, 61-m towers located near each of SRS's major facilities and a 304-m television tower located about 16 km WNW from the SRS administrative area. Low-level soundings obtained from on-site launches of mini-rawinsondes and Airsondes provided additional date on the vertical structure of the boundary layer for 11 of the experiments. Soundings were also obtained for Athens, GA., and Charleston, SC, from the National Climatic Data Center. The MATS data set is available for use by diffusion researchers and modelers. Two experiments were examined in detail and compared with predictions from a simple Gaussian model to help demonstrate the usefulness of the data. These cases show that the downwind locations of tracer material were predicted adequately if uniform winds at release level were assumed but that the magnitude of the concentration was overpredicted by factors of 2.5 and 10. 21 refs., 14 figs., 4 tabs

  8. Diversity of Heterotrophic Nitrogen Fixation Genes in a Marine Cyanobacterial Mat

    OpenAIRE

    J. P. Zehr; Mellon, M.; Braun, S.; Litaker, W; Steppe, T.; Paerl, H W

    1995-01-01

    The diversity of nitrogenase genes in a marine cyanobacterial mat was investigated through amplification of a fragment of nifH, which encodes the Fe protein of the nitrogenase complex. The amplified nifH products were characterized by DNA sequencing and were compared with the sequences of nitrogenase genes from cultivated organisms. Phylogenetic analysis showed that similar organisms clustered together, with the exception that anaerobic bacteria clustered together, even though they represente...

  9. Summer season variability of dissolved oxygen concentration in Antarctic lakes rich in cyanobaterial mats

    OpenAIRE

    Váczi Peter; Barták Miloš

    2011-01-01

    Since 2007, limnological investigation of terrestrial lakes has been carried out at James Ross Island, Antarctica. The lakes in scope differ in their size, origin, geomorphological and hydrological characteristics. In several selected lakes, dissolved oxygen is measured repeatedly each summer season in order to quantify lake- and weather-related differences. For this study, typical reresentatives of (i) coastal shalow lakes, and (ii) high-altitude lakes with cyanobacterial mats were chosen. W...

  10. Multiarray on a test strip (MATS): rapid multiplex immunodetection of priority potato pathogens.

    Science.gov (United States)

    Safenkova, Irina V; Pankratova, Galina K; Zaitsev, Ilya A; Varitsev, Yuri A; Vengerov, Yuri Y; Zherdev, Anatoly V; Dzantiev, Boris B

    2016-09-01

    Multiarray on a test strip (MATS) was developed for the detection of eight important potato pathogens. The proposed assay combines the rapidity of immunochromatography with the high throughput of array techniques. The test zone of the immunochromatographic strip comprises ordered rows of spots containing antibodies specific for different potato pathogens. The assay benefits from the simplicity of immunochromatography; colored immune complexes form at the corresponding spots within the test zone. The presence and intensity of the coloration are used for identification of the target pathogens. The MATS was applied to the simultaneous detection of eight priority potato pathogens, characterized by the following limits of detection: 1 ng/mL for potato virus X and the ordinary type of potato virus Y, 10 ng/mL for potato virus M, 20 ng/mL for potato leaf roll virus, 40 ng/mL for necrotic-type potato virus Y, 100 ng/mL for potato virus S, 300 ng/mL for potato virus A, and 10(4) cells/mL for Clavibacter michiganensis subsp. sepedonicus. Analysis time was 15 min. The observed sensitivity of the MATS was comparable to the traditional enzyme-linked immunosorbent assay. The developed technique was tested on potato leaf extracts, and its efficiency for on-site control of the pathogens was confirmed in 100 % by commercial LFIA test strips. Graphical abstract Location of binding zones in the developed multiarray on a test strip (MATS) for simultaneous detection of eight pathogens. PMID:27007732

  11. Fermentation and Sulfur Reduction in the Mat-Building Cyanobacterium Microcoleus chthonoplastes

    OpenAIRE

    Moezelaar, R.; Bijvank, S. M.; Stal, L.J.

    1996-01-01

    The mat-building cyanobacterium Microcoleus chthonoplastes carried out a mixed-acid fermentation when incubated under anoxic conditions in the dark. Endogenous storage carbohydrate was fermented to acetate, ethanol, formate, lactate, H(inf2), and CO(inf2). Cells with a low glycogen content (about 0.3 (mu)mol of glucose per mg of protein) produced acetate and ethanol in equimolar amounts. In addition to glycogen, part of the osmoprotectant, glucosyl-glycerol, was degraded. The glucose componen...

  12. Microbial mats in Antarctica as models for the search of life on the Jovian moon Europa

    International Nuclear Information System (INIS)

    The possibility of sulfur patches on the Jovian satellite Europa being of biogenic origin is discussed. The presence of microbial mats and the accumulation of sulfur on the surface of some Antarctic subglacial lakes are correlated with the sulfur traces found on Europa by means of microbiological processes. Special attention has been paid to the influence of temperature and radiation on the icy surface of this Jovian satellite. An optimum penetration depth to look for biomarkers is proposed based on biogeochemical parameters. (author)

  13. Glass Fiber Reinforced Polymer Bars as the Top Mat Reinforcement for Bridge Decks

    OpenAIRE

    DeFreese, James Michael

    2001-01-01

    The primary objective of this research was to experimentally investigate material and bond properties of three different types of fiber reinforced polymer (FRP) bars, and determine their effect on the design of a bridge deck using FRP bars as the top mat of reinforcement. The properties evaluated include the tensile strength, modulus of elasticity, bond behavior, and maximum bond stress. The experimental program included 47 tensile tests and 42 beam end bond tests performed with FRP bars. ...

  14. Glass fiber reinforced polymer bars as top mat reinforcement for bridge decks

    OpenAIRE

    J.M. DeFreese; Roberts-Wollmann, Carin L.

    2002-01-01

    The objectives of this research were to characterize the material and bond properties of three commercially available GFRP (glass fiber reinforced polymer) reinforcing bars, and evaluate the effects of the material properties and the current ACI design recommendations (ACI 2001) on the design of a bridge deck with GFRP as top mat reinforcement. The tensile properties evaluated were ultimate tensile strength, tensile modulus of elasticity and ultimate rupture strain. Ultimate bond stress and l...

  15. Mat på arbetet dygnet runt? Arbete – Tid – Måltid

    DEFF Research Database (Denmark)

    Jørgensen, Michael Søgaard; Lagnevik, Magnus; Lindén, Anne-Lisa;

    nutritionister, som sociologer och företagsekonomer medverkar. I september 2008 hölls en workshop med utgångspunkt i rapporten ”Mat på arbetet dygnet runt”. Under workshopen deltog olika aktörer från båda sidor av Öresund, och denna slutrapport innehåller utöver en kunskapsöversikt och en jämförelse mellan...

  16. TRIGA-SPEC: the prototype of MATS and LaSpec

    Science.gov (United States)

    Kaufmann, S.; Beyer, T.; Blaum, K.; Block, M.; Düllmann, Ch E.; Eberhardt, K.; Eibach, M.; Geppert, C.; Gorges, C.; Grund, J.; Hammen, M.; Krämer, J.; Nagy, Sz; Nörtershäuser, W.; Renisch, D.; Schneider, F.; Wendt, K.

    2015-04-01

    Investigation of short-lived nuclei is a challenging task that MATS and LaSpec will handle at the low energy branch of Super-FRS at FAIR. The groundwork for those experiments is laid-out already today at the TRIGA-SPEC facility as a powerful development platform located at the research reactor TRIGA Mainz. The latest status, new developments and first results of commissioning runs are presented here.

  17. Molecular Phylogeny of Section Parrya of Pinus (Pinaceae) Based on Chloroplast matK Gene Sequence Data

    Institute of Scientific and Technical Information of China (English)

    ZHANGZhi-Yong; LIDe-Zhu

    2004-01-01

    The molecular phylogenetics of sect. Parrya Myre of Pinus L. was analyzed based onchloroplast matKgene sequence data. The section was resolved as paraphyletic because members of thesect. Strobus were nested within a clade composed by the Asian members of the section, including theVietnamese P. krempfii Lecomte, which was strongly supported with a bootstrap value of 92%. [n thistopology, the three sampled species of sect. Strobus formed a strongly supported monophyletic group,while their relationships of Asian species of sect. Parrya were not clear. P. krempfii was grouped with P.gerardiana Wall. ex D. Don with low bootstrap support. The relationships among the Asian members of thesect. Parrya, i.e.P, bungeana Zucc. ex Loud., P. gerardiana and the recently described endangered pine, P.squarnata X. W. Li, was not resolved, although the monophyly of the three pines was strongly supported inthe combined analysis of four cpDNA sequences. The topology of the neighbor joining tree revealed anassemblage of the American members of the section, which also appeared in the majority rule tree withweak bootstrap support. However, this assemblage was not resolved in the consensus tree of theparsimonious analysis. The American subsect. Ba/fourianae Engelm. formed a weakly supported groupincluding P. aristata Engelm., while the relationships among and within the other two American subsections,Cembroides Englem. and tTzedowskianae Carv., were not resolved, as the members of them formed apolytomy in the consensus tree of the parsimonious analysis. The biogeographical implications of theresults are also discussed in this paper.

  18. Universal plant DNA barcode loci may not work in complex groups: a case study with Indian berberis species.

    Directory of Open Access Journals (Sweden)

    Sribash Roy

    Full Text Available BACKGROUND: The concept of DNA barcoding for species identification has gained considerable momentum in animals because of fairly successful species identification using cytochrome oxidase I (COI. In plants, matK and rbcL have been proposed as standard barcodes. However, barcoding in complex genera is a challenging task. METHODOLOGY AND PRINCIPAL FINDINGS: We investigated the species discriminatory power of four reportedly most promising plant DNA barcoding loci (one from nuclear genome--ITS, and three from plastid genome--trnH-psbA, rbcL and matK in species of Indian Berberis L. (Berberidaceae and two other genera, Ficus L. (Moraceae and Gossypium L. (Malvaceae. Berberis species were delineated using morphological characters. These characters resulted in a well resolved species tree. Applying both nucleotide distance and nucleotide character-based approaches, we found that none of the loci, either singly or in combinations, could discriminate the species of Berberis. ITS resolved all the tested species of Ficus and Gossypium and trnH-psbA resolved 82% of the tested species in Ficus. The highly regarded matK and rbcL could not resolve all the species. Finally, we employed amplified fragment length polymorphism test in species of Berberis to determine their relationships. Using ten primer pair combinations in AFLP, the data demonstrated incomplete species resolution. Further, AFLP analysis showed that there was a tendency of the Berberis accessions to cluster according to their geographic origin rather than species affiliation. CONCLUSIONS/SIGNIFICANCE: We reconfirm the earlier reports that the concept of universal barcode in plants may not work in a number of genera. Our results also suggest that the matK and rbcL, recommended as universal barcode loci for plants, may not work in all the genera of land plants. Morphological, geographical and molecular data analyses of Indian species of Berberis suggest probable reticulate evolution and thus

  19. Tracking the Effect of Algal Mats on Coral Bleaching Using Remote Sensing

    Science.gov (United States)

    El-Askary, H. M.; Johnson, S. H.; Idris, N.; Qurban, M. A. B.

    2014-12-01

    Benthic habitats rely on relatively stable environmental conditions for survival. The introduction of algal mats into an ecosystem can have a notable effect on the livelihood of organisms such as coral reefs by causing changes in the biogeochemistry of the surrounding water. Increasing levels of acidity and new competition for sunlight caused by congregations of cyanobacteria essentially starve coral reefs of natural resources. These changes are particularly prevalent in waters near quickly developing population centers, such as the ecologically diverse Arabian Gulf. While ground-truthing studies to determine the extensiveness of coral death proves useful on a microcosmic level, new ventures in remote sensing research allow scientists to utilize satellite data to track these changes on a broader scale. Satellite images acquired from Landsat 5, 1987, Landsat 7, 2000, and Landsat 8, 2013 along with higher resolution IKONOS data are digitally analyzed in order to create spectral libraries for relevant benthic types, which in turn can be used to perform supervised classifications and change detection analyses over a larger area. The supervised classifications performed over the three scenes show five significant marine-related classes, namely coral, mangroves, macro-algae, and seagrass, in different degrees of abundance, yet here we focus only on the algal mats impact on corals bleaching. The change detection analysis is introduced to study see the degree of algal mats impact on coral bleaching over the course of time with possible connection to the local meteorology and current climate scenarios.

  20. A class of Matérn-like covariance functions for smooth processes on a sphere

    KAUST Repository

    Jeong, Jaehong

    2015-02-01

    © 2014 Elsevier Ltd. There have been noticeable advancements in developing parametric covariance models for spatial and spatio-temporal data with various applications to environmental problems. However, literature on covariance models for processes defined on the surface of a sphere with great circle distance as a distance metric is still sparse, due to its mathematical difficulties. It is known that the popular Matérn covariance function, with smoothness parameter greater than 0.5, is not valid for processes on the surface of a sphere with great circle distance. We introduce an approach to produce Matérn-like covariance functions for smooth processes on the surface of a sphere that are valid with great circle distance. The resulting model is isotropic and positive definite on the surface of a sphere with great circle distance, with a natural extension for nonstationarity case. We present extensive numerical comparisons of our model, with a Matérn covariance model using great circle distance as well as chordal distance. We apply our new covariance model class to sea level pressure data, known to be smooth compared to other climate variables, from the CMIP5 climate model outputs.

  1. The effects of pilates mat exercise on the balance ability of elderly females.

    Science.gov (United States)

    Hyun, Ju; Hwangbo, Kak; Lee, Chae-Woo

    2014-02-01

    [Purpose] The purpose of this study was to examine the effects of Pilates exercise on a mat and balance exercise on an unstable base of support for trunk stability on the balance ability of elderly females. [Subjects and Methods] Forty elderly women aged 65 or older were equally assigned to a Pilates mat exercise (PME) group and an unstable support surface exercise (USSE) group. They conducted exercise three times per week for 12 weeks for 40 minutes each time. In order to examine balance, sway length and the speed of the center of foot pressure were measured for one minute, and in order to examine dynamic balance, the Timed Up and Go (TUG) test was conducted. [Results] After the intervention, sway length, sway speed, and TUG significantly decreased in both groups. A comparison of sway speed after the intervention between the two groups revealed that the PME group showed larger decreases than the USSE group. [Conclusion] PME and USSE elicited significant effects on the static and dynamic balance of elderly female subjects, suggesting that those exercises are effective at enhancing the balance ability of this group of subjects. However, the Pilates mat exercise is regarded as being safer than exercise on an unstable base of support. PMID:24648651

  2. Incorporation of Vanadium Oxide in Silica Nanofiber Mats via Electrospinning and Sol-Gel Synthesis

    Directory of Open Access Journals (Sweden)

    Jeanne E. Panels

    2006-01-01

    Full Text Available Submicron scale vanadia/silica hybrid nanofiber mats have been produced by electrospinning silica sol-gel precursor containing vanadium oxytriisopropoxide (VOTIP, followed by calcinations at high temperature. The properties of the resulting inorganic hybrid nanofiber mats are compared to those of electrospun pure silica nanofibers. SEM images show fibers are submicron in diameter and their morphology is maintained after calcination. Physisorption experiments reveal that silica nanofiber mats have a high specific surface area of 63 m2/g. FT-IR spectra exhibit Si—O vibrations and indicate the presence of V2O5 in the fibers. XPS studies reveal that the ratio of Si to O is close to 0.5 on the surface of fibers and the amount of vanadium on the surface of fibers increases with calcination. XRD diffraction patterns show that silica nanofibers are amorphous and orthorhombic V2O5 crystals have formed after calcination. EFTEM images demonstrate the growth of crystals on the surface of fibers containing vanadium after calcination. SEM images of fibers with high-vanadium content (50 mol% V: Si show that vanadia crystals are mostly aligned along the fiber axis. XPS shows an increase in vanadium contents at the surface, and XRD patterns exhibit an increase in the degree of crystallinity. A coaxial electrospinning scheme has successfully been employed to selectively place V2O5 in the skin layer.

  3. Multibeam Sonar Mapping and Modeling of a Submerged Bryophyte Mat in Crater Lake, Oregon

    Science.gov (United States)

    Dartnell, Peter; Collier, Robert; Buktenica, Mark; Jessup, Steven; Girdner, Scott; Triezenberg, Peter

    2008-01-01

    Traditionally, multibeam data have been used to map sea floor or lake floor morphology as well as the distribution of surficial facies in order to characterize the geologic component of benthic habitats. In addition to using multibeam data for geologic studies, we want to determine if these data can also be used directly to map the distribution of biota. Multibeam bathymetry and acoustic backscatter data collected in Crater Lake, Oregon, in 2000 are used to map the distribution of a deep-water bryophyte mat, which will be extremely useful for understanding the overall ecology of the lake. To map the bryophyte's distribution, depth range, acoustic backscatter intensity, and derived bathymetric index grids are used as inputs into a hierarchical decision-tree classification model. Observations of the bryophyte mat from over 23 line kilometers of lake-floor video collected in the summer of 2006 are used as controls for the model. The resulting map matches well with ground-truth information and shows that the bryophyte mat covers most of the platform surrounding Wizard Island as well as on outcrops around the caldera wall.

  4. Superhydrophobic, Hybrid, Electrospun Cellulose Acetate Nanofibrous Mats for Oil/Water Separation by Tailored Surface Modification.

    Science.gov (United States)

    Arslan, Osman; Aytac, Zeynep; Uyar, Tamer

    2016-08-01

    Electrospun cellulose acetate nanofibers (CA-NF) have been modified with perfluoro alkoxysilanes (FS/CA-NF) for tailoring their chemical and physical features aiming oil-water separation purposes. Strikingly, hybrid FS/CA-NF showed that perfluoro groups are rigidly positioned on the outer surface of the nanofibers providing superhydrophobic characteristic with a water contact angle of ∼155°. Detailed analysis showed that hydrolysis/condensation reactions led to the modification of the acetylated β(1 → 4) linked d-glucose chains of CA transforming it into a superhydrophobic nanofibrous mat. Analytical data have revealed that CA-NF surfaces can be selectively controlled for fabricating the durable, robust and water resistant hybrid electrospun nanofibrous mat. The -OH groups available on the CA structure allowed the basic sol-gel reactions started by the reactive FS hybrid precursor system which can be monitored by spectroscopic analysis. Since alkoxysilane groups on the perfluoro silane compound are capable of reacting for condensation together with the CA, superhydrophobic nanofibrous mat is obtained via electrospinning. This structural modification led to the facile fabrication of the novel oil/water nanofibrous separator which functions effectively demonstrated by hexane/oil and water separation experiments. Perfluoro groups consequently modified the hydrophilic CA nanofibers into superhydrophobic character and therefore FS/CA-NF could be quite practical for future applications like water/oil separators, as well as self-cleaning or water resistant nanofibrous structures. PMID:27398738

  5. Polyelectrolyte multilayer film-assisted formation of zero-valent iron nanoparticles onto polymer nanofibrous mats

    International Nuclear Information System (INIS)

    A facile approach that combines the electrospinning technique and layer-by-layer (LbL) assembly method has been developed to synthesize and immobilize zero-valent iron nanoparticles (ZVI NPs) onto the surface of nanofibers for potential environmental applications. In this approach, negatively charged cellulose acetate (CA) nanofibers fabricated by electrospinning CA solution were modified with bilayers composed of positively charged poly(diallyl-dimethyl-ammoniumchloride) (PDADMAC) and negatively charged poly(acrylic acid) (PAA) through electrostatic LbL assembly approach to form composite nanofibrous mats. The composite nanofibrous mats were immersed into the ferrous iron solution to allow Fe(II) ions to complex with the free carboxyl groups of PAA, and then ZVI NPs were immobilized onto the composite nanofibrous mats instantly by reducing the ferrous cations. Combined scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy dispersive spectroscopy (EDS), and thermogravimetry analysis demonstrated that the ZVI NPs are successfully synthesized and uniformly distributed into the polyelectrolyte (PE) multilayer films assembled onto the CA nanofibers. The present approach to synthesis ZVI NPs opens a new avenue to fabricating various materials with high surface area for environmental, catalytic, and sensing applications.

  6. Fabrication and Formation Mechanism of Ag Nanoplate-Decorated Nanofiber Mats and Their Application in SERS.

    Science.gov (United States)

    Jia, Peng; Chang, Jiao; Wang, Jianqiang; Zhang, Pan; Cao, Bing; Geng, Yuting; Wang, Xiuxing; Pan, Kai

    2016-01-01

    We report a new simple method to fabricate a highly active SERS substrate consisting of poly-m-phenylenediamine/polyacrylonitrile (PmPD/PAN) decorated with Ag nanoplates. The formation mechanism of Ag nanoplates is investigated. The synthetic process of the Ag nanoplate-decorated PmPD/PAN (Ag nanoplates@PmPD/PAN) nanofiber mats consists of the assembly of Ag nanoparticles on the surface of PmPD/PAN nanofibers as crystal nuclei followed by in situ growth of Ag nanoparticles exclusively into nanoplates. Both the reducibility of the polymer and the concentration of AgNO3 are found to play important roles in the formation and the density of Ag nanoplates. The optimized Ag nanoplates@PmPD/PAN nanofiber mats exhibit excellent activity and reproducibility in surface-enhanced Raman scattering (SERS) detection of 4-mercaptobenzoic acid (4-MBA) with a detection limit of 10(-10)  m, making the Ag nanoplates@PmPD/PAN nanofiber mats a promising substrate for SERS detection of chemical molecules. In addition, this work also provides a design and fabrication process for a 3D SERS substrate made of a reducible polymer with noble metals. PMID:26395245

  7. An Energy Balance Model to Predict Chemical Partitioning in a Photosynthetic Microbial Mat

    Science.gov (United States)

    Hoehler, Tori M.; Albert, Daniel B.; DesMarais, David J.

    2006-01-01

    Studies of biosignature formation in photosynthetic microbial mat communities offer potentially useful insights with regards to both solar and extrasolar astrobiology. Biosignature formation in such systems results from the chemical transformation of photosynthetically fixed carbon by accessory microorganisms. This fixed carbon represents a source not only of reducing power, but also energy, to these organisms, so that chemical and energy budgets should be coupled. We tested this hypothesis by applying an energy balance model to predict the fate of photosynthetic productivity under dark, anoxic conditions. Fermentation of photosynthetically fixed carbon is taken to be the only source of energy available to cyanobacteria in the absence of light and oxygen, and nitrogen fixation is the principal energy demand. The alternate fate for fixed carbon is to build cyanobacterial biomass with Redfield C:N ratio. The model predicts that, under completely nitrogen-limited conditions, growth is optimized when 78% of fixed carbon stores are directed into fermentative energy generation, with the remainder allocated to growth. These predictions were compared to measurements made on microbial mats that are known to be both nitrogen-limited and populated by actively nitrogen-fixing cyanobacteria. In these mats, under dark, anoxic conditions, 82% of fixed carbon stores were diverted into fermentation. The close agreement between these independent approaches suggests that energy balance models may provide a quantitative means of predicting chemical partitioning within such systems - an important step towards understanding how biological productivity is ultimately partitioned into biosignature compounds.

  8. LHCb Scintillating Fibre Tracker Engineering Design Review Report: Fibres, Mats and Modules

    CERN Document Server

    Joram, Christian; Leverington, Blake Dean; Kirn, Thomas; Bachmann, Sebastian; Ekelhof, Robert Jan; Müller, Janine

    2015-01-01

    During the Long Shutdown 2 of the LHC, the LHCb collaboration will replace the current Outer and Inner Tracker by a single tracking detector, based on 2.42m long scintillating fibres with a diameter of 250 $\\mu$m, readout by silicon photo-multipliers (SiPM). The fibers are arranged in mats of 6 fibre-layers with a width of 130.65 mm. Eight fibre mats will form a module and are sandwiched between honeycomb and carbon fibre composite panels to provide stability and support over the module length of 4.85m. At either end of the module are the interfaces to the SiPMs and the front-end electronics. The active detection area of the Scintillating Fiber Tracker (SciFi) of 360m$^2$ will comprise 144 single modules arranged in 12 detection planes. This document summarizes the engineering design of the fibre mats and of the modules including the interfaces to the SiPMs and the mounting to the detector frames. Mechanical and detector properties of several prototype modules are discussed. The production procedure of the fi...

  9. Biocidal Activity of Plasma Modified Electrospun Polysulfone Mats Functionalized with Polyethyleneimine-Capped Silver Nanoparticles

    KAUST Repository

    Schiffman, Jessica D.

    2011-11-01

    The incorporation of silver nanoparticles (AgNPs) into polymeric nanofibers has attracted a great deal of attention due to the strong antimicrobial activity that the resulting fibers exhibit. However, bactericidal efficacy of AgNP-coated electrospun fibrous mats has not yet been demonstrated. In this study, polysulfone (PSf) fibers were electrospun and surface-modified using an oxygen plasma treatment, which allowed for facile irreversible deposition of cationically charged polyethyleneimine (PEI)-AgNPs via electrostatic interactions. The PSf-AgNP mats were characterized for relative silver concentration as a function of plasma treatment time using ICP-MS and changes in contact angle. Plasma treatment of 60 s was the shortest time required for maximum loss of bacteria (Escherichia coli) viability. Time-dependent bacterial cytotoxicity studies indicate that the optimized PSf-AgNP mats exhibit a high level of inactivation against both Gram negative bacteria, Escherichia coli, and Gram positive bacteria, Bacillus anthracis and Staphylococcus aureus. © 2011 American Chemical Society.

  10. Oxygen-Dependent Morphogenesis of Modern Clumped Photosynthetic Mats and Implications for the Archean Stromatolite Record

    Directory of Open Access Journals (Sweden)

    Malcolm R. Walter

    2012-10-01

    Full Text Available Some modern filamentous oxygenic photosynthetic bacteria (cyanobacteria form macroscopic tufts, laminated cones and ridges that are very similar to some Archean and Proterozoic stromatolites. However, it remains unclear whether microbes that constructed Archean clumps, tufts, cones and ridges also produced oxygen. Here, we address this question by examining the physiology of cyanobacterial clumps, aggregates ~0.5 mm in diameter that initiate the growth of modern mm- and cm-scale cones. Clumps contain more particulate organic carbon in the form of denser, bowed and bent cyanobacterial filaments, abandoned sheaths and non-cyanobacterial cells relative to the surrounding areas. Increasing concentrations of oxygen in the solution enhance the bending of filaments and the persistence of clumps by reducing the lateral migration of filaments away from clumps. Clumped mats in oxic media also release less glycolate, a soluble photorespiration product, and retain a larger pool of carbon in the mat. Clumping thus benefits filamentous mat builders whose incorporation of inorganic carbon is sensitive to oxygen. The morphogenetic sequence of mm-scale clumps, reticulate ridges and conical stromatolites from the 2.7 Ga Tumbiana Formation likely records similar O2-dependent behaviors, preserving currently the oldest morphological signature of oxygenated environments on Early Earth.

  11. Use of Lightweight Cellular Mats to Reduce the Settlement of Structure on Soft Soil

    Science.gov (United States)

    Ganasan, R.; Lim, A. J. M. S.; Wijeyesekera, D. C.

    2016-07-01

    Construction of structures on soft soils gives rise to some difficulties in Malaysia and other country especially in settlement both in short and long term. The focus of this research is to minimize the differential and non-uniform settlement on peat soil with the use of an innovative cellular mat. The behaviour and performance of the lightweight geo-material (in block form) is critically investigated and in particular the use as a fill in embankment on soft ground. Hemic peat soil, sponge and innovative cellular mat will be used as the main material in this study. The monitoring in settlement behavior from this part of research will be done as laboratory testing only. The uneven settlement in this problem was uniquely monitored photographically using spot markers. In the end of the research, it is seen that the innovative cellular mat has reduce the excessive and differential settlement up to 50% compare to flexible and rigid foundations. This had improve the stiffness of soils as well as the porous contain in cellular structure which help in allowing water/moisture to flow through in or out thus resulting in prevent the condition of floating.

  12. The effectiveness of the 4MAT teaching model upon student achievement and attitude levels

    Directory of Open Access Journals (Sweden)

    Uyangör, Sevinç Mert

    2012-01-01

    Full Text Available 4MAT is an 8-step, sequential instructional model based on two theoretical constructs: Kolb's model of learning styles and the concept of brain hemisphericity. The model, developed by B. McCarthy (1987 is derived by interacting each of Kolb's four quadrants with both left and right brain. The purpose of this study is to examine the influence of the 4MAT teaching model which depends on learning styles that have been generated by the help of the relationship between the brain and learning; and focuses on the learning loop as a centre upon students’ level of mathematics course achievement; and the level of attitudes towards mathematics in the unit of the Hoop and Circle. An experimental pattern model with a pre-test, post-test control group has been used in this research. The sample of this study comprised 81 students from the 7th grade at Public School in Balıkesir during the 2009-2010 education periods. It has been determined that 4MAT method of instruction was more efficient than the traditional method.

  13. 何首乌及其常见混淆品的matK基因序列分析及鉴别%Analysis and Authentication of Fallopia multiflora and Its Adulterants by matK Sequence

    Institute of Scientific and Technical Information of China (English)

    生书晶; 严萍; 郑传进; 赵树进

    2010-01-01

    目的:比较何首乌与其常见混淆品的matK基因序列,从分子水平对中药材何首乌进行鉴定.方法:改良的CTAB法提取基因组DNA,用一对matK通用引物进行PCR扩增,TA克隆后进行测序和序列分析.结果:除毛脉蓼之外,其他混淆品与正品何首乌间的matK基因序列差异较大,不论是核苷酸替代数还是遗传距离,都远远大于不同居群的何首乌之间;进一步比对分析,发现了可以快速鉴别何首乌及其同属混淆品的鉴别位点;运用matK序列分析成功地对3种市售何首乌药材进行了真伪鉴定.结论:根据matK序列特征,能有效区分何首乌及其常见混淆品,matK序列可以作为何首乌药材鉴定的分子标记.

  14. Tunable Structures and Properties of Electrospun Regenerated Silk Fibroin Mats Annealed in Water Vapor at Different Times and Temperatures

    Directory of Open Access Journals (Sweden)

    Xiangyu Huang

    2014-01-01

    Full Text Available Regenerated silk fibroin (SF mats were fabricated using electrospinning technique, followed by mild water vapor annealing to effectively tune the structures and improve the mechanical properties of the mats at different annealing times and temperatures. The breaking strength and the breaking energy of the mats treated with water vapor at 65°C for 12 h reached 6.0 MPa and 171.7 J/kg, respectively. The conformational transition of the SF mats was significantly influenced by the treating temperature, while the influence of time was comparatively limited. The influence is consistent with the time-temperature equivalent principle and would be helpful for the preparation of water-vapor-annealed silk-based biomaterials for various applications.

  15. Expansion rate and geometry of floating vegetation mats on the margins of thermokarst lakes, northern Seward Peninsula, Alaska, USA

    Science.gov (United States)

    Parsekian, A.D.; Jones, Benjamin M.; Jones, M.; Grosse, G.; Walter, Anthony K.M.; Slater, L.

    2011-01-01

    Investigations on the northern Seward Peninsula in Alaska identified zones of recent (expansion. This paper reports on the recent expansion of these collapse features and their geometry is determined using geophysical and remote sensing measurements. The vegetation mats were observed to have an average thickness of 0.57m and petrophysical modeling indicated that gas content of 1.5-5% enabled floatation above the lake surface. Furthermore, geophysical investigation provides evidence that the mats form by thaw and subsidence of the underlying permafrost rather than terrestrialization. The temperature of the water below a vegetation mat was observed to remain above freezing late in the winter. Analysis of satellite and aerial imagery indicates that these features have expanded at maximum rates of 1-2myr-1 over a 56year period. Including the spatial coverage of floating 'thermokarst mats' increases estimates of lake area by as much as 4% in some lakes. ?? 2011 John Wiley & Sons, Ltd.

  16. RESIDUAL STRENGTH OF CHOPPED STRAND MAT GLASS FIBRE/EPOXY COMPOSITE STRUCTURES: EFFECT OF TEMPERATURE AND WATER ABSORPTION

    Directory of Open Access Journals (Sweden)

    M. M. Rahman

    2011-12-01

    Full Text Available The residual strength of chopped strand mat glass fibre/epoxy composites following exposure to different hygrothermal conditions was investigated. All residual tests were carried out according to ASTM D 3479 and D 3039 on tension-tension fatigue with a frequency of 5 Hz, a stress ratio of R= 0.5and maximum stress σmax = 60 MPa. The residual strength curves were used to investigate the strength of chopped strand mat glass fibre/epoxy under the effect of temperature and the interactive environment of water absorption and temperature. The results showed that the chopped strand mat glass fibre/epoxy had high resistance toward tension-tension fatigue loading. However, the degradation of the tensile residual strength of chopped strand mat glass fibre/epoxy was significant with high water absorption at an elevated temperature.

  17. Avasõnad / Mats Estonius, Toomas Hendrik Ilves, Eduardo Ibáñes, Uffe A. Baslev

    Index Scriptorium Estoniae

    2010-01-01

    Konverentsi avasõnad laususid Tallinna Ülikooli prorektor Mats Estonius, Eesti Vabariigi president Toomas Hendrik Ilves, Hispaania Kuningriigi suursaadik Eestis Eduardo Ibáñes, Taani Kuningriigi suursaadik Eestis Uffe A. Baslev

  18. Propulsion System Simulation Using the Toolbox for the Modeling and Analysis of Thermodynamic System T-MATS

    Science.gov (United States)

    Chapman, Jeffryes W.; Lavelle, Thomas M.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei

    2014-01-01

    A simulation toolbox has been developed for the creation of both steady-state and dynamic thermodynamic software models. This paper describes the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS), which combines generic thermodynamic and controls modeling libraries with a numerical iterative solver to create a framework for the development of thermodynamic system simulations, such as gas turbine engines. The objective of this paper is to present an overview of T-MATS, the theory used in the creation of the module sets, and a possible propulsion simulation architecture. A model comparison was conducted by matching steady-state performance results from a T-MATS developed gas turbine simulation to a well-documented steady-state simulation. Transient modeling capabilities are then demonstrated when the steady-state T-MATS model is updated to run dynamically.

  19. Propulsion System Simulation Using the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS)

    Science.gov (United States)

    Chapman, Jeffryes W.; Lavelle, Thomas M.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei

    2014-01-01

    A simulation toolbox has been developed for the creation of both steady-state and dynamic thermodynamic software models. This paper describes the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS), which combines generic thermodynamic and controls modeling libraries with a numerical iterative solver to create a framework for the development of thermodynamic system simulations, such as gas turbine engines. The objective of this paper is to present an overview of T-MATS, the theory used in the creation of the module sets, and a possible propulsion simulation architecture. A model comparison was conducted by matching steady-state performance results from a T-MATS developed gas turbine simulation to a well-documented steady-state simulation. Transient modeling capabilities are then demonstrated when the steady-state T-MATS model is updated to run dynamically.

  20. Dosimetric comparison of 3D conformal, IMRT, and V-MAT techniques for accelerated partial-breast irradiation (APBI)

    Energy Technology Data Exchange (ETDEWEB)

    Qiu, Jian-Jian [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States); Department of Radiation Oncology, Fudan University Shanghai Cancer Center, Shanghai (China); Department of Oncology, Shanghai Medical College, Fudan University, Shanghai (China); Chang, Zheng; Horton, Janet K.; Wu, Qing-Rong Jackie; Yoo, Sua [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States); Yin, Fang-Fang, E-mail: fangfang.yin@duke.edu [Department of Radiation Oncology, Duke University Medical Center, Durham, NC (United States)

    2014-07-01

    The purpose is to dosimetrically compare the following 3 delivery techniques: 3-dimensional conformal radiation therapy (3D-CRT), intensity-modulated arc therapy (IMRT), and volumetric-modulated arc therapy (V-MAT) in the treatment of accelerated partial-breast irradiation (APBI). Overall, 16 patients with T1/2N0 breast cancer were treated with 3D-CRT (multiple, noncoplanar photon fields) on the RTOG 0413 partial-breast trial. These cases were subsequently replanned using static gantry IMRT and V-MAT technology to understand dosimetric differences among these 3 techniques. Several dosimetric parameters were used in plan quality evaluation, including dose conformity index (CI) and dose-volume histogram analysis of normal tissue coverage. Quality assurance studies including gamma analysis were performed to compare the measured and calculated dose distributions. The IMRT and V-MAT plans gave more conformal target dose distributions than the 3D-CRT plans (p < 0.05 in CI). The volume of ipsilateral breast receiving 5 and 10 Gy was significantly less using the V-MAT technique than with either 3D-CRT or IMRT (p < 0.05). The maximum lung dose and the ipsilateral lung volume receiving 10 (V{sub 10}) or 20 Gy (V{sub 20}) were significantly less with both V-MAT and IMRT (p < 0.05). The IMRT technique was superior to 3D-CRT and V-MAT of low dose distributions in ipsilateral lung (p < 0.05 in V{sub 5} and D{sub 5}). The total mean monitor units (MUs) for V-MAT (621.0 ± 111.9) were 12.2% less than those for 3D-CRT (707.3 ± 130.9) and 46.5% less than those for IMRT (1161.4 ± 315.6) (p < 0.05). The average machine delivery time was 1.5 ± 0.2 minutes for the V-MAT plans, 7.0 ± 1.6 minutes for the 3D-CRT plans, and 11.5 ± 1.9 minutes for the IMRT plans, demonstrating much less delivery time for V-MAT. Based on this preliminary study, V-MAT and IMRT techniques offer improved dose conformity as compared with 3D-CRT techniques without increasing dose to the ipsilateral lung. In

  1. Evaluation of HiMAT aircraft landing approach lateral control gearing using simulation and a visual display

    Science.gov (United States)

    Sarrafian, S. K.

    1984-01-01

    The utility of a visual display when studying the influence of changes in lateral stick gearing gains on the Highly Maneuverable Aircraft Technology (HiMAT) vehicle handling qualities during simulated approaches and landings is investigated. The visual display improved the validity of the simulation and provided improved roll response cues for the HiMAT aircraft landing approach. A range of acceptable constant lateral stick gearing gains is found that provides adequate maneuverability and allows for precision moments.

  2. Dynamics of bacterial populations during bench‐scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats

    OpenAIRE

    Ali, Nidaa; Dashti, Narjes; Salamah, Samar; Sorkhoh, Naser; Al‐Awadhi, Husain; Samir RADWAN

    2016-01-01

    Summary This study describes a bench‐scale attempt to bioremediate Kuwaiti, oily water and soil samples through bioaugmentation with coastal microbial mats rich in hydrocarbonoclastic bacterioflora. Seawater and desert soil samples were artificially polluted with 1% weathered oil, and bioaugmented with microbial mat suspensions. Oil removal and microbial community dynamics were monitored. In batch cultures, oil removal was more effective in soil than in seawater. Hydrocarbonoclastic bacteria ...

  3. Professor Mats Larsson 60 år : En dokumentation från ett hyllningsseminarium i oktober 2013

    OpenAIRE

    2014-01-01

    To congratulate Professor Mats Larsson on the occasion of his 60th birthday, the Departmentof Economic History, Uppsala University, arranged a seminar in his honour in the fall of2013. Speakers representing business administration and economic history from a number ofSwedish universities spoke on a range of subjects touching upon Mats Larsson’s own researchinterests such as business history, banking history, economic history and biography. Thepresent volume includes the lectures and the follo...

  4. Timescales of Growth Response of Microbial Mats to Environmental Change in an Ice-Covered Antarctic Lake

    Directory of Open Access Journals (Sweden)

    Anne D. Jungblut

    2013-01-01

    Full Text Available Lake Vanda is a perennially ice-covered, closed-basin lake in the McMurdo Dry Valleys, Antarctica. Laminated photosynthetic microbial mats cover the floor of the lake from below the ice cover to >40 m depth. In recent decades, the water level of Lake Vanda has been rising, creating a “natural experiment” on development of mat communities on newly flooded substrates and the response of deeper mats to declining irradiance. Mats in recently flooded depths accumulate one lamina (~0.3 mm per year and accrue ~0.18 µg chlorophyll-a cm−2 y−1. As they increase in thickness, vertical zonation becomes evident, with the upper 2-4 laminae forming an orange-brown zone, rich in myxoxanthophyll and dominated by intertwined Leptolyngbya trichomes. Below this, up to six phycobilin-rich green/pink-pigmented laminae form a subsurface zone, inhabited by Leptolyngbya, Oscillatoria and Phormidium morphotypes. Laminae continued to increase in thickness for several years after burial, and PAM fluorometry indicated photosynthetic potential in all pigmented laminae. At depths that have been submerged for >40 years, mats showed similar internal zonation and formed complex pinnacle structures that were only beginning to appear in shallower mats. Chlorophyll-a did not change over time and these mats appear to represent resource-limited “climax” communities. Acclimation of microbial mats to changing environmental conditions is a slow process, and our data show how legacy effects of past change persist into the modern community structure.

  5. Influence of Pilates Mat and Apparatus Exercises on Pain and Balance of Businesswomen with Chronic Low Back Pain

    OpenAIRE

    Lee, Chae-Woo; Hyun, Ju; Kim, Seong Gil

    2014-01-01

    [Purpose] The purpose of this study was to examine the influence of mat Pilates and apparatus Pilates on pain and static balance of businesswomen with chronic back pain. [Subjects and Methods] Participants were randomly allocated to Pilates mat exercises (PME) or Pilates apparatus exercise (PAE), and performed the appropriate Pilates exercises 3 days per week for 8 weeks. In order to measure the improvement in the participants’ static balance ability as a result of the exercise, the sway leng...

  6. MatVPC: A User-Friendly MATLAB-Based Tool for the Simulation and Evaluation of Systems Pharmacology Models

    OpenAIRE

    Biliouris, Kostas; Lavielle, Marc; Trame, Mirjam

    2015-01-01

    International audience Quantitative systems pharmacology (QSP) models are progressively entering the arena of contemporary pharmacology. The efficient implementation and evaluation of complex QSP models necessitates the development of flexible computational tools that are built into QSP mainstream software. To this end, we present MatVPC, a versatile MATLAB-based tool that accommodates QSP models of any complexity level. MatVPC executes Monte Carlo simulations as well as automatic construc...

  7. Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat

    OpenAIRE

    Pringault, Olivier; Aube, J.; Bouchez, O.; Klopp, C.; Mariette, J.; Escudie, F.; Senin, P.; Goni-Urriza, M.

    2015-01-01

    The contamination of polluted environments is often due to a complex mixture of pollutants sometimes at trace levels which nevertheless may have significant effects on the diversity and functioning of organisms. The aim of this study was to assess the functional responses of a microbial mat exposed to a natural complex mixture of PAHs and metals as a function of the maturation stage of the biofilm. Microbial mats sampled in a slightly polluted environment were exposed to contaminated water of...

  8. Assessing Children's Anxiety Using the Modified Short State-Trait Anxiety Inventory and Talking Mats: A Pilot Study

    OpenAIRE

    Stefan Nilsson; Margret Buchholz; Gunilla Thunberg

    2012-01-01

    Background. Preoperative anxiety complicates treatment and requires assessment by nurses in children. Children, with or without disability, are helped when pictures are used to support communication. The purpose of this pilot study was to test the reliability and validity of the modified short State-Trait Anxiety Inventory (STAI) using a modified Talking Mats method in children undergoing day surgeries. Method. A modified short STAI with pictorial support along the lines of the Talking Mats m...

  9. Metagenomic Assembly of the Dominant Zetaproteobacteria in an Iron-oxidizing Hydrothermal Microbial Mat

    Science.gov (United States)

    Moyer, C. L.; Fullerton, H.

    2013-12-01

    Iron is the fourth most abundant element in the Earth's crust and is potentially one of the most abundant energy sources on the earth as an electron donor for chemolithoautotrophic growth coupled to Fe(II) oxidation. Despite the rapid abiotic oxidation rate of iron, many microbes have adapted to feeding off this fleeting energy source. One such bacterial class is the Zetaproteobacteria. Iron-dominated microbial mat material was collected with a small-scale syringe sampler from Loihi Seamount, Hawaii. From this sample, gDNA was extracted and prepared for paired-end Illumina sequencing. Reconstruction of SSU rDNA genes using EMERGE allowed for comparison to previous SSU rDNA surveys. Clone libraries and qPCR show these microbial mats to be dominated by Zetaproteobacteria. Results from our in silico reconstruction confirm these initial findings. RDP classification of the EMERGE reconstructed sequences resulted in 44% of the community being identified as Zetaproteobacteria. The most abundant SSU rDNA has 99% similarity to Zeta OTU-2, and only a 94% similarity to M. ferrooxidans PV-1. Zeta OTU-2 has been shown to be the most cosmopolitan population in iron-dominated hydrothermal systems from across Pacific Ocean. Metagenomic assembly has resulted in many contigs with high identity to M. ferrooxidans as identified, by BLAST. However, with large differences in SSU rRNA similarity, M. ferrooxidans PV-1 is not an adequate reference. Current work is focusing on reconstruction of the dominant microbial mat member, without the use of a reference genome through an iterative assembly approach. The resulting 'pan-genome' will be compared to other Zetaproteobacteria (at the class level) and the functional ecology of this cosmopolitan microbial mat community member will be extrapolated. Thus far, we have detected multiple housekeeping genes involved in DNA replication, transcription and translation. The most abundant metabolic gene we have found is Aconitase, a key enzyme in the

  10. Plant DNA barcodes can accurately estimate species richness in poorly known floras.

    Directory of Open Access Journals (Sweden)

    Craig Costion

    Full Text Available BACKGROUND: Widespread uptake of DNA barcoding technology for vascular plants has been slow due to the relatively poor resolution of species discrimination (∼70% and low sequencing and amplification success of one of the two official barcoding loci, matK. Studies to date have mostly focused on finding a solution to these intrinsic limitations of the markers, rather than posing questions that can maximize the utility of DNA barcodes for plants with the current technology. METHODOLOGY/PRINCIPAL FINDINGS: Here we test the ability of plant DNA barcodes using the two official barcoding loci, rbcLa and matK, plus an alternative barcoding locus, trnH-psbA, to estimate the species diversity of trees in a tropical rainforest plot. Species discrimination accuracy was similar to findings from previous studies but species richness estimation accuracy proved higher, up to 89%. All combinations which included the trnH-psbA locus performed better at both species discrimination and richness estimation than matK, which showed little enhanced species discriminatory power when concatenated with rbcLa. The utility of the trnH-psbA locus is limited however, by the occurrence of intraspecific variation observed in some angiosperm families to occur as an inversion that obscures the monophyly of species. CONCLUSIONS/SIGNIFICANCE: We demonstrate for the first time, using a case study, the potential of plant DNA barcodes for the rapid estimation of species richness in taxonomically poorly known areas or cryptic populations revealing a powerful new tool for rapid biodiversity assessment. The combination of the rbcLa and trnH-psbA loci performed better for this purpose than any two-locus combination that included matK. We show that although DNA barcodes fail to discriminate all species of plants, new perspectives and methods on biodiversity value and quantification may overshadow some of these shortcomings by applying barcode data in new ways.

  11. Multifunctional ZnO/Nylon 6 nanofiber mats by an electrospinning-electrospraying hybrid process for use in protective applications

    International Nuclear Information System (INIS)

    ZnO/Nylon 6 nanofiber mats were prepared by an electrospinning-electrospraying hybrid process in which ZnO nanoparticles were dispersed on the surface of Nylon 6 nanofibers without becoming completely embedded. The prepared ZnO/Nylon 6 nanofiber mats were evaluated for their abilities to kill bacteria or inhibit their growth and to catalytically detoxify chemicals. Results showed that these ZnO/Nylon 6 nanofiber mats had excellent antibacterial efficiency (99.99%) against both the Gram-negative Escherichia coli and Gram-positive Bacillus cereus bacteria. In addition, they exhibited good detoxifying efficiency (95%) against paraoxon, a simulant of highly toxic chemicals. ZnO/Nylon 6 nanofiber mats were also deposited onto nylon/cotton woven fabrics and the nanofiber mats did not significantly affect the moisture vapor transmission rates and air permeability values of the fabrics. Therefore, ZnO/Nylon 6 nanofiber mats prepared by the electrospinning-electrospraying hybrid process are promising material candidates for protective applications.

  12. Multifunctional ZnO/Nylon 6 nanofiber mats by an electrospinning-electrospraying hybrid process for use in protective applications

    Energy Technology Data Exchange (ETDEWEB)

    Vitchuli, Narendiran; Shi Quan; McCord, Marian; Zhang Xiangwu [Fiber and Polymer Science Program, Department of Textile Engineering, Chemistry and Science, North Carolina State University, Raleigh, NC 27695-8301 (United States); Nowak, Joshua; Bourham, Mohamed [Department of Nuclear Engineering, North Carolina State University, Raleigh, NC 27695-7909 (United States); Kay, Kathryn [Department of Microbiology, North Carolina State University, Raleigh, NC 27695-7610 (United States); Caldwell, Jane M; Breidt, Frederick, E-mail: bourham@ncsu.edu, E-mail: mmccord@ncsu.edu, E-mail: xiangwu_zhang@ncsu.edu [Department of Food Science, North Carolina Agricultural Research Service, North Carolina State University, Raleigh, NC 27695-7624 (United States)

    2011-10-15

    ZnO/Nylon 6 nanofiber mats were prepared by an electrospinning-electrospraying hybrid process in which ZnO nanoparticles were dispersed on the surface of Nylon 6 nanofibers without becoming completely embedded. The prepared ZnO/Nylon 6 nanofiber mats were evaluated for their abilities to kill bacteria or inhibit their growth and to catalytically detoxify chemicals. Results showed that these ZnO/Nylon 6 nanofiber mats had excellent antibacterial efficiency (99.99%) against both the Gram-negative Escherichia coli and Gram-positive Bacillus cereus bacteria. In addition, they exhibited good detoxifying efficiency (95%) against paraoxon, a simulant of highly toxic chemicals. ZnO/Nylon 6 nanofiber mats were also deposited onto nylon/cotton woven fabrics and the nanofiber mats did not significantly affect the moisture vapor transmission rates and air permeability values of the fabrics. Therefore, ZnO/Nylon 6 nanofiber mats prepared by the electrospinning-electrospraying hybrid process are promising material candidates for protective applications.

  13. Multifunctional ZnO/Nylon 6 nanofiber mats by an electrospinning–electrospraying hybrid process for use in protective applications

    Directory of Open Access Journals (Sweden)

    Narendiran Vitchuli, Quan Shi, Joshua Nowak, Kathryn Kay, Jane M Caldwell, Frederick Breidt, Mohamed Bourham, Marian McCord and Xiangwu Zhang

    2011-01-01

    Full Text Available ZnO/Nylon 6 nanofiber mats were prepared by an electrospinning–electrospraying hybrid process in which ZnO nanoparticles were dispersed on the surface of Nylon 6 nanofibers without becoming completely embedded. The prepared ZnO/Nylon 6 nanofiber mats were evaluated for their abilities to kill bacteria or inhibit their growth and to catalytically detoxify chemicals. Results showed that these ZnO/Nylon 6 nanofiber mats had excellent antibacterial efficiency (99.99% against both the Gram-negative Escherichia coli and Gram-positive Bacillus cereus bacteria. In addition, they exhibited good detoxifying efficiency (95% against paraoxon, a simulant of highly toxic chemicals. ZnO/Nylon 6 nanofiber mats were also deposited onto nylon/cotton woven fabrics and the nanofiber mats did not significantly affect the moisture vapor transmission rates and air permeability values of the fabrics. Therefore, ZnO/Nylon 6 nanofiber mats prepared by the electrospinning–electrospraying hybrid process are promising material candidates for protective applications.

  14. Effects of microbial mats on germination and seedling survival of typical dune slack species in the Netherlands

    NARCIS (Netherlands)

    Adema, E.B.; Elzinga, J.A.; Grootjans, A.P.

    2004-01-01

    We investigated the influence of the exotic nitrogen-fixing black locust (Robinia pseudoacacia) on nitrogen cycling in a pitch pine (Pinus rigida) -scrub oak (Quercus ilicifolia, Q. prinoides) ecosystem. Within paired pine-oak and adjacent black locust stands that were the result of a 20-35 year-old

  15. Aspergillus waksmanii sp. nov. and Aspergillus marvanovae sp. nov., two closely related species in section Fumigati

    DEFF Research Database (Denmark)

    Hubka, Vit; Peterson, Stephen W.; Frisvad, Jens Christian;

    2013-01-01

    ). Aspergillus marvanovae sp. nov. was isolated from water with high boracic acid anions content in Dukovany nuclear power station (Czech Republic). The sexual stage of this species is unknown, but the MAT1-1 locus was successfully amplified suggesting that the species is probably heterothallic and teleomorphic...

  16. 基于matK基因的松属白皮松组分子系统发育分析%Molecular Phylogeny of Section Parrya of Pinus (Pinaceae) Based on Chloroplast matK Gene Sequence Data

    Institute of Scientific and Technical Information of China (English)

    张志勇; 李德铢

    2004-01-01

    基于matK基因对松属(Pinus L.)白皮松组(sect.Parrya Myre)进行了分子系统发育分析.白皮松组为一个并系类群,因为白松组的成员与该组(包括越南的扁叶松(P.krempfii Lecomte))的亚洲成员形成一个强烈支持的分支(靴带值92%).在这个分支中,白松组的3个代表种形成一个稳定的单系,而白皮松组的亚洲成员之间系统发育关系不明确.扁叶松和西藏白皮松(P. gerardiana Wall.ex D.Don)聚在一起,但只有61%的支持率.虽然在以前4个cpDNA基因序列分析时五针白皮松(P.squamata X.W.Li)与白皮松(P.bungeana Zucc.ex Loud.)和西藏白皮松形成一个单系,但在本文的分析中三者的关系不明确.在邻接树和多数一致简约树上,北美的白皮松组成员形成一个支持率低的分支.北美的subsect.Balfourianae Engelm.亚组(包括P.aristata Engelm.)是一个单系,但支持率较低.美洲另外两个亚组subsect.Cembroides Englem.和subsect.Rzedowskianae Carv.的组间和组内关系不确定,它们在严格一致简约树上形成一个多歧分支.%The molecular phylogenetics of sect. Parrya Myre of Pinus L. was analyzed based on chloroplast matKgene sequence data. The section was resolved as paraphyletic because members of the sect. Strobus were nested within a clade composed by the Asian members of the sectio n, including the Vietnamese P. krempfii Lecomte, which was strongly supported with a bootstrap value of 92%. In this topology, the three sampled species of sect. Strobus formed a strongly supported monophyletic group,while their relationships of Asian species of sect. Parrya were not clear. P. krempfii was grouped with P.gerardiana Wall. ex D. Don with low bootstrap support. The relationships among the Asian members of the sect. Parrya, i.e.P. bungeana Zucc. ex Loud., P. gerardiana and the recently described endangered pine, P.squamata X. W. Li, was not resolved, although the monophyly of the three pines was strongly supported in the

  17. Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species

    OpenAIRE

    Sribash Roy; Antariksh Tyagi; Virendra Shukla; Anil Kumar; Singh, Uma M.; Lal Babu Chaudhary; Bhaskar Datt; Bag, Sumit K.; Singh, Pradhyumna K.; Nair, Narayanan K.; Tariq Husain; Rakesh Tuli

    2010-01-01

    BACKGROUND: The concept of DNA barcoding for species identification has gained considerable momentum in animals because of fairly successful species identification using cytochrome oxidase I (COI). In plants, matK and rbcL have been proposed as standard barcodes. However, barcoding in complex genera is a challenging task. METHODOLOGY AND PRINCIPAL FINDINGS: We investigated the species discriminatory power of four reportedly most promising plant DNA barcoding loci (one from nuclear genome--ITS...

  18. Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar

    KAUST Repository

    Al-Thani, Roda

    2014-03-21

    The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1–L4) in the photosynthetic mats. Chlorophyll a (Chl a) concentration and distribution (measured by HPLC and hyperspectral imaging, respectively), the phycocyanin distribution (scanned with hyperspectral imaging), oxygenic photosynthesis (determined by microsensor), and the abundance of photosynthetic microorganisms (from 16S and 18S rRNA sequencing) decreased with depth in the euphotic layer (L1). Incident irradiance exponentially attenuated in the same zone reaching 1% at 1.7-mm depth. Proteobacteria dominated all layers of the mat (24%–42% of the identified bacteria). Anoxygenic photosynthetic bacteria (dominated by Chloroflexus) were most abundant in the third red layer of the mat (L3), evidenced by the spectral signature of Bacteriochlorophyll as well as by sequencing. The deep, black layer (L4) was dominated by sulfate reducing bacteria belonging to the Deltaproteobacteria, which were responsible for high sulfate reduction rates (measured using 35S tracer). Members of Halobacteria were the dominant Archaea in all layers of the mat (92%–97%), whereas Nematodes were the main Eukaryotes (up to 87%). Primary productivity rates of Um Alhool mat were similar to those of other hypersaline microbial mats. However, sulfate reduction rates were relatively low, indicating that oxygenic respiration contributes more to organic material degradation than sulfate reduction, because of bioturbation. Although Um Alhool hypersaline mat is a nutrient-limited ecosystem, it is interestingly dynamic and phylogenetically highly diverse. All its components work in a highly efficient and synchronized way to compensate for the lack of nutrient supply provided during regular inundation periods.

  19. Community structure and activity of a highly dynamic and nutrient-limited hypersaline microbial mat in Um Alhool Sabkha, Qatar.

    Directory of Open Access Journals (Sweden)

    Roda Al-Thani

    Full Text Available The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1-L4 in the photosynthetic mats. Chlorophyll a (Chl a concentration and distribution (measured by HPLC and hyperspectral imaging, respectively, the phycocyanin distribution (scanned with hyperspectral imaging, oxygenic photosynthesis (determined by microsensor, and the abundance of photosynthetic microorganisms (from 16S and 18S rRNA sequencing decreased with depth in the euphotic layer (L1. Incident irradiance exponentially attenuated in the same zone reaching 1% at 1.7-mm depth. Proteobacteria dominated all layers of the mat (24%-42% of the identified bacteria. Anoxygenic photosynthetic bacteria (dominated by Chloroflexus were most abundant in the third red layer of the mat (L3, evidenced by the spectral signature of Bacteriochlorophyll as well as by sequencing. The deep, black layer (L4 was dominated by sulfate reducing bacteria belonging to the Deltaproteobacteria, which were responsible for high sulfate reduction rates (measured using 35S tracer. Members of Halobacteria were the dominant Archaea in all layers of the mat (92%-97%, whereas Nematodes were the main Eukaryotes (up to 87%. Primary productivity rates of Um Alhool mat were similar to those of other hypersaline microbial mats. However, sulfate reduction rates were relatively low, indicating that oxygenic respiration contributes more to organic material degradation than sulfate reduction, because of bioturbation. Although Um Alhool hypersaline mat is a nutrient-limited ecosystem, it is interestingly dynamic and phylogenetically highly diverse. All its components work in a highly efficient and synchronized way to compensate for the lack of nutrient supply provided during regular inundation periods.

  20. Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPS, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly.

    Science.gov (United States)

    Gravendeel, B; Chase, M W; de Vogel, E F; Roos, M C; Mes, T H; Bachmann, K

    2001-10-01

    To evaluate the monophyly of Coelogyne (Epidendroideae; Orchidaceae) and reveal sectional relationships and relations to allied genera in subtribe Coelogyninae, we collected PCR (polymerase chain reaction) amplified restriction fragment length polymorphisms (RFLPs) from 11 plastid regions for 42 taxa (28 Coelogyne species and 14 representatives of other genera) and three outgroups from Bletiinae and Thuniinae. We also sequenced a large portion of the plastid trnK intron (mostly matK) and the nuclear ribosomal DNA internal transcribed spacers ITS1 and ITS2 (including the 5.8S gene). Separate phylogenetic analyses on each data set using maximum parsimony produced mainly congruent (except for the position of Panisea) but weakly supported clades. Parsimony analysis of the combined data clearly identified three main clades in Coelogyninae. Whereas Coelogyninae are monophyletic, Coelogyne is polyphyletic, with species falling into at least two well-supported clades. The utility of morphological characters used in previous classifications was explored by reconstructing character state evolution on one of the four molecular trees. Lip base and petal shape were homoplasious, whereas ovary indumentum and flower number were congruent with well-supported groups. The implications of our results for the classification of Coelogyne are discussed, and a reorganization of the genus by including Neogyna and Pholidota and removing several species is proposed. PMID:21669624

  1. Electrospun silk-elastin-like fibre mats for tissue engineering applications

    International Nuclear Information System (INIS)

    Protein-based polymers are present in a wide variety of organisms fulfilling structural and mechanical roles. Advances in protein engineering and recombinant DNA technology allow the design and production of recombinant protein-based polymers (rPBPs) with an absolute control of its composition. Although the application of recombinant proteins as biomaterials is still an emerging technology, the possibilities are limitless and far superior to natural or synthetic materials, as the complexity of the structural design can be fully customized. In this work, we report the electrospinning of two new genetically engineered silk-elastin-like proteins (SELPs) consisting of alternate silk- and elastin-like blocks. Electrospinning was performed with formic acid and aqueous solutions at different concentrations without addition of further agents. The size and morphology of the electrospun structures was characterized by scanning electron microscopy showing its dependence on the concentration and solvent used. Treatment with methanol-saturated air was employed to stabilize the structure and promote water insolubility through a time-dependent conversion of random coils into β-sheets (FTIR). The resultant methanol-treated electrospun mats were characterized for swelling degree (570–720%), water vapour transmission rate (1083 g/m2/day) and mechanical properties (modulus of elasticity ∼126 MPa). Furthermore, the methanol-treated SELP fibre mats showed no cytotoxicity and were able to support adhesion and proliferation of normal human skin fibroblasts. Adhesion was characterized by a filopodia-mediated mechanism. These results demonstrate that SELP fibre mats can provide promising solutions for the development of novel biomaterials suitable for tissue engineering applications. (paper)

  2. A comparison of the WIND System atmospheric models and MATS data

    International Nuclear Information System (INIS)

    The results produced by two of the WIND System atmospheric models, PUFF/PLUME and 2DPUF, were compared with a select group of eight MATS experiments to determine the performance of the models. Three of the MATS experiments employed TRAC vehicle sampling and the remaining five used a line of fixed samplers. The performance of the models was based on certain dispersion characteristics that are important in emergency response situations. Both PUFF/PLUME and 2DPUF were executed with the same source term and meteorological data. When the numerical results from the models were compared to the observed values from the MATS experiments, it was found that 2DPUF produced concentrations and plume widths that were closer to the observed values than PUFF/PLUME. Both models did not produce any bias in the values of the concentration when individual data points were examined; however, PUFF/PLUME consistently overpredicted the peak and total concentrations. 2DPUF did not exibit any bias in the peak and total concentrations. When wind direction errors were removed, 80--84% of the concentrations from PUFF/PLUME and 88% of the concentrations from 2DPUF where within a factor of 10 of the observed values. In some instances, both models were able to predict concentration values that were comparible to a more complex, three-dimensional model called MATHEW-ADPIC. Considering all of the possible uncertainties associated with dispersion modeling, PUFF/PLUME and 2DPUF performed reasonably well. The differences between the dispersion forecasts made by PUFF/PLUME and 2DPUF and the observed surface tracer concentration are very similar to many other emergency response models based on the Gaussian assumption

  3. Microbial mats in playa lakes and other saline habitats: Early Mars analog?

    Science.gov (United States)

    Bauld, John

    1989-01-01

    Microbial mats are cohesive benthic microbial communities which inhabit various Terra (Earth-based) environments including the marine littoral and both permanent and ephemeral (playa) saline lakes. Certain geomorphological features of Mars, such as the Margaritifer Sinus, were interpreted as ancient, dried playa lakes, presumably formed before or during the transition to the present Mars climate. Studies of modern Terran examples suggest that microbial mats on early Mars would have had the capacity to survive and propagate under environmental constraints that would have included irregularly fluctuating regimes of water activity and high ultraviolet flux. Assuming that such microbial communities did indeed inhabit early Mars, their detection during the Mars Rover Sample Return (MRSR) mission depends upon the presence of features diagnostic of the prior existence of these communities or their component microbes or, as an aid to choosing suitable landing, local exploration or sampling sites, geomorphological, sedimentological or chemical features characteristic of their playa lake habitats. Examination of modern Terran playas (e.g., the Lake Eyre basin) shows that these features span several orders of magnitude in size. While stromatolites are commonly centimeter-meter scale features, bioherms or fields of individuals may extend to larger scales. Preservation of organic matter (mats and microbes) would be favored in topographic lows such as channels or ponds of high salinity, particularly those receiving silica-rich groundwaters. These areas are likely to be located near former zones of groundwater emergence and/or where flood channels entered the paleo-playa. Fossil playa systems which may aid in assessing the applicability of this particular Mars analog include the Cambrian Observatory Hill Beds of the Officer Basin and the Eocene Wilkins Peak Member of the Green River Formation.

  4. Physicochemical characterization of different trademarks of compound Yerba Maté and their herbs

    Directory of Open Access Journals (Sweden)

    Griselda Patricia Scipioni

    2007-07-01

    Full Text Available The objectives of this study were to evaluate the physicochemical characteristics of the main herbs used in the mixture of yerba maté with other aromatic herbs and the characterization of the trademarks of compound yerba maté. Moisture, water extract, total ash, acid-insoluble ash and caffeine concentration were determined. Results showed higher values of moisture content, total and aci-insoluble ash and lower water extracts in the herbs. Determinations were carried out in nine trademarks of compound yerba maté. In most cases they complied with the standards of the country with the exception of one trademark from Argentina.A erva-mate composta é um produto que se consome amplamente na região do MERCOSUL. Obtém-se misturando erva-mate com outras ervas aromáticas. O objetivo desta pesquisa foi o estudo das características físico-químicas das principais ervas usadas na mistura e a caracterização das marcas de erva-mate composta. Determinou-se a umidade, extração de água, cinzas totais, cinzas insolúveis ácidas e a concentração de cafeína. Encontraram-se nas ervas, valores padrões diferentes aos da erva-mate tais como valores maiores de conteúdo de umidade, cinzas totais, cinzas insolúveis ácidas e menores extratos de água. Fizeram-se determinações em nove marcas de erva-mate composta. Na maioria dos casos, cumpriam com as normas do país, exceto uma marca da Argentina

  5. The Effects Of The 4MAT Education Model On The Student Achievements and Learning Style

    OpenAIRE

    F. Tugba Dikkartın; Sevinç Mert Uyangör

    2009-01-01

    The aim of this study is to determine the effects of teaching mathematics has been taught on the basis of the learning style, on students’ achievements, their acquisition and the relation between the learning styles and acquisition. Thus, in the present research, based on the teaching styles, teaching the subject of ‘Orbit and Circle’ in ‘Geometry and Measure’ unit was taught in terms of 4MAT instruction model. The research was conducted in the pre-post test with single-control group design o...

  6. Matérias-primas da plataforma do Mondego para cerâmica

    OpenAIRE

    Lisboa, José Vítor de Magalhães Barros Vieira

    2009-01-01

    O presente trabalho divulga os resultados dos estudos levados a efeito nas matérias-primas argilosas que se integram tipologicamente na argila comum, ocorrentes na designada Plataforma do Mondego, Centro de Portugal, na região entre Miranda do Corvo, a SW, e Tábua, a NE. Para tal realizou-se a cartografia superficial dos sedimentos continentais do Cretácico e do Terciário, aí preservados, estabeleceram-se as colunas sedimentares, a nível regional e a nível local, nas áreas de maior potencial ...

  7. Formation of Microbial Mats and Salt in Radioactive Paddy Soils in Fukushima, Japan

    Directory of Open Access Journals (Sweden)

    Kazue Tazaki

    2015-12-01

    Full Text Available Coastal areas in Minami-soma City, Fukushima, Japan, were seriously damaged by radioactive contamination from the Fukushima Daiichi Nuclear Power Plant (FDNPP accident that caused multiple pollution by tsunami and radionuclide exposure, after the Great East Japan Earthquake, on 11 March 2011. Some areas will remain no-go zones because radiation levels remain high. In Minami-soma, only 26 percent of decontamination work had been finished by the end of July in 2015. Here, we report the characterization of microbial mats and salt found on flooded paddy fields at Karasuzaki, Minami-soma City, Fukushima Prefecture, Japan which have been heavily contaminated by radionuclides, especially by Cs (134Cs, 137Cs, 40K, Sr (89Sr, 90Sr, and 91 or 95Zr even though it is more than 30 km north of the FDNPP. We document the mineralogy, the chemistry, and the micro-morphology, using a combination of micro techniques. The microbial mats were found to consist of diatoms with mineralized halite and gypsum by using X-ray diffraction (XRD. Particular elements concentrated in microbial mats were detected using scanning electron microscopy equipped with energy dispersive spectroscopy (SEM-EDS and X-ray fluorescence (XRF. The objective of this contribution is to illustrate the ability of various diatoms associated with minerals and microorganisms which are capable of absorbing both radionuclides and stable isotopes from polluted paddy soils in extreme conditions. Ge semiconductor analysis of the microbial mats detected 134Cs, 137Cs, and 40K without 131I in 2012 and in 2013. Quantitative analysis associated with the elemental content maps by SEM-EDS indicated the possibility of absorption of radionuclide and stable isotope elements from polluted paddy soils in Fukushima Prefecture. In addition, radionuclides were detected in solar salts made of contaminated sea water collected from the Karasuzaki ocean bath, Minami-soma, Fukushima in 2015, showing high Zr content associated

  8. Results from the HiRadMat Primary Beam Line Commissioning

    CERN Document Server

    Hessler, C; Bauche, J; Bestmann, K; Blanco Sancho, J; Conan, N; Cornelis, K; Efthymiopoulos, I; Gaillard, H; Goddard, B; Grenier, D; Gros, G; Habert, A; Jensen, L; Kain, V; Le Godec, G; Meddahi, M; Pelletier, S; Pepinster, P; Puccio, B; Theis, C; Trilhe, P; Vandoni, G; Wenninger, J

    2011-01-01

    The High Radiation to Materials facility (HiRadMat) is a new experimental area at CERN, for studies of the impact of high-intensity pulsed beams on accelerator components and materials. The beam is delivered from the SPS by a new primary beam line, which has been constructed during the 2010/11 winter technical stop. The paper summarizes the construction phase and describes the results from the beam line commissioning in spring 2011. Beam parameter and aperture measurements are presented, as well as steering tests. A special emphasis has been put on the handling of the exceptionally flexible beam line optics in the control system.

  9. Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    DEFF Research Database (Denmark)

    Al-Najjar, A.A.; De Beer, D.; Jørgensen, B. B.;

    2011-01-01

    Here we present, to the best of our knowledge, the first balanced light energy budget for a benthic microbial mat ecosystem, and show how the budget and the spatial distribution of the local photosynthetic efficiencies within the euphotic zone depend on the absorbed irradiance (J(abs)). Our...... example, at J(abs)>700 micromol photon m(-2) s(-1), they reached around 10% of the maximum values at depths 0-0.3 mm and progressively increased toward 100% below 0.3 mm. This study provides the base for addressing, in much more detail, the photobiology of densely populated photosynthetic systems with...

  10. Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem

    DEFF Research Database (Denmark)

    Al-Najjar, A. A.; de Beer, Dirk; Jørgensen, Bo Barker;

    2010-01-01

    Here we present, to the best of our knowledge, the first balanced light energy budget for a benthic microbial mat ecosystem, and show how the budget and the spatial distribution of the local photosynthetic efficiencies within the euphotic zone depend on the absorbed irradiance (J(abs)). Our...... example, at J(abs)>700 micromol photon m(-2) s(-1), they reached around 10% of the maximum values at depths 0-0.3 mm and progressively increased toward 100% below 0.3 mm. This study provides the base for addressing, in much more detail, the photobiology of densely populated photosynthetic systems with...

  11. HiRadMat: A high‐energy, pulsed beam, material irradiation facility

    CERN Multimedia

    Charitonidis, Nikolaos

    2016-01-01

    HiRadMat is a facility constructed in 2011, designed to provide high-intensity pulsed beams to an irradiation area where different material samples or accelerator components can be tested. The facility, located at the CERN SPS accelerator complex, uses a 440 GeV proton beam with a pulse length up to 7.2 μs and a maximum intensity up to 1E13 protons / pulse. The facility, a unique place for performing state-of-the art beam-to-material experiments, operates under transnational access and welcomes and financially supports, under certain conditions, experimental teams to perform their experiments.

  12. Charpy V, an application in Mat lab; Charpy V, una aplicacion en Matlab

    Energy Technology Data Exchange (ETDEWEB)

    Castillo M, J.A.; Torres V, M. [ININ, 52045 Ocoyoacac, Estado de Mexico (Mexico)

    2003-07-01

    The obtained results with the system Charpy V{sub V}1 designed in Mat lab for the estimate of parameters of three mathematical models are shown. The adjustment of data is used to determine the fracture energy, the lateral expansion and the percentage of ductility of steels coming from the reactor vessels of Laguna Verde, Veracruz. The data come from test tubes type Charpy V of irradiated material and not irradiated. To verify our results they were compared with those obtained by General Electric of data coming from the Laguna Verde nuclear power plant. (Author)

  13. A matéria coletável comum consolidade do imposto sobre as sociedades

    OpenAIRE

    Almeida, Tânia Marina H. de

    2012-01-01

    Face a uma economia cada vez mais globalizada, e no intuito de fortalecer o mercado interno europeu (nomeadamente face às ameaças de perda de competitividade fiscal), a Comissão Europeia apresentou, em março de 2011, uma proposta de Diretiva relativa à Matéria Coletável Comum Consolidada do Imposto das Sociedades (MCCCIS). O presente estudo procederá a uma análise dos aspetos mais relevantes introduzidos pela referida proposta, incidindo particularmente no exame do impacto ao nível da formaçã...

  14. Chemical compatibility study of Cooley L18KU, Herculite, and Elephant Mat with Hanford tank waste

    International Nuclear Information System (INIS)

    An independent chemical compatibility review of various wrapping and absorbent/padding materials was conducted to evaluate resistance to chemicals and constituents present in liquid waste from the Hanford underground tanks. These materials will be used to wrap long-length contaminated equipment when such equipment is removed from the tanks and prepared for transportation and subsequent disposal or storage. The materials studied were Cooley L18KU, Herculite, and Elephant Mat. The study concludes that these materials are appropriate for use in this application

  15. Efficacy of serum samples stored on filter paper for the detection of antibody to Leptospira spp. by microagglutination test (MAT).

    Science.gov (United States)

    Blanco, R M; Romero, E C

    2012-12-14

    The aim of this study was to investigate the microagglutination test (MAT) results in serum samples dried on filter paper and stored at different temperatures during 1day, 7days, 30days and 1year to determine the stability of sera antibody against leptospires. Serum samples collected onto filter paper for the detection of leptospires antibody was compared with MAT in a study of 300 serum samples from patients with suspected leptospirosis. Among 300 fresh serum samples analyzed by MAT 156 (52%) were positive and 144 (48%) negative. All the negative fresh serum samples were negative when dried on filter paper (specificity 100%). The sensitivity of MAT performed on dried serum samples was 100%. Storage on filter paper at room temperature and at 4°C for 1 and 7days did not affect the MAT titers. For up to 7days, 98.72% of dried serum samples had titers identical to those of the corresponding serum samples, and 1.18% of dried serum samples showed 1 dilution of difference. After a storage period of one month a prozone phenomenon was observed. After a storage period of one year all serum samples were negative. Serum samples collected onto filter paper are a convenient source of antibodies for serological diagnosis and epidemiological surveys. PMID:22960422

  16. Photocatalytic and antibacterial properties of a TiO{sub 2}/nylon-6 electrospun nanocomposite mat containing silver nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Pant, Hem Raj [Department of Bionanosystem Engineering, Chonbuk National University, Jeonju 561-756 (Korea, Republic of); Department of Engineering Science and Humanities, Institute of Engineering, Pulchowk Campus, Tribhuvan University, Kathmandu (Nepal); Pandeya, Dipendra Raj [Department of Microbiology and Immunology, Institute for Medical Science, Chonbuk National University, Jeonju, 561-756 (Korea, Republic of); Nam, Ki Taek; Baek, Woo-il [Department of Textile Engineering, Chonbuk National University, Jeonju 561-756 (Korea, Republic of); Hong, Seong Tshool [Department of Microbiology and Immunology, Institute for Medical Science, Chonbuk National University, Jeonju, 561-756 (Korea, Republic of); Kim, Hak Yong, E-mail: khy@jbnu.ac.kr [Department of Textile Engineering, Chonbuk National University, Jeonju 561-756 (Korea, Republic of)

    2011-05-15

    Silver-impregnated TiO{sub 2}/nylon-6 nanocomposite mats exhibit excellent characteristics as a filter media with good photocatalytic and antibacterial properties and durability for repeated use. Silver nanoparticles (NPs) were successfully embedded in electrospun TiO{sub 2}/nylon-6 composite nanofibers through the photocatalytic reduction of silver nitrate solution under UV-light irradiation. TiO{sub 2} NPs present in nylon-6 solution were able to cause the formation of a high aspect ratio spider-wave-like structure during electrospinning and facilitated the UV photoreduction of AgNO{sub 3} to Ag. TEM images, UV-visible and XRD spectra confirmed that monodisperse Ag NPs (approximately 4 nm in size) were deposited selectively upon the TiO{sub 2} NPs of the prepared nanocomposite mat. The antibacterial property of a TiO{sub 2}/nylon-6 composite mat loaded with Ag NPs was tested against Escherichia coli, and the photoactive property was tested against methylene blue. All of the results showed that TiO{sub 2}/nylon-6 nanocomposite mats loaded with Ag NPs are more effective than composite mats without Ag NPs. The prepared material has potential as an economically friendly photocatalyst and water filter media because it allows the NPs to be reused.

  17. Biosystematics and evolutionary studies in Indian Drimia species

    Institute of Scientific and Technical Information of China (English)

    Neetin DESAI; Hemant KAWALKAR; Ghansham DIXIT

    2012-01-01

    The taxonomic position and genetic relationship within Indian Drimia species is controversial due to their morphological similarities and genomic complexities.The present work gives an insight on the genetic relationship between Indian Drimia species on the basis of their karyotype,pollen morphology,flower opening characteristics,hybridization behavior,and by use of DNA sequence of two molecular markers (internal transcribed spacers [ITS]and maturase K [matK]).The karyotypic studies of Indian Drimia species revealed various polyploid forms making their identification and delimitation more difficult.The five species of Indian Drimia are grouped into two complexes,indica complex and wightii complex on the basis of their pollen morphology,karyotype,and hybridization behavior.These two groups were found to be evolving separately.The cytomorphological studies of wightii complex revealed that it is evolving through polyploid and chromosome repatterning,while indica complex have adapted polyploid as well as hybridization for evolution.Phylogeny obtained from DNA sequences of molecular markers (ITS and matK)confirmed that the indica complex and wightii complex are evolving parallely,by grouping them in two clusters.Thus,a combination of conventional and molecular methods proved to be of great use for delimiting a small but complex group of Indian Drimia species.

  18. The influence of microbial mats on the formation of sand volcanoes and mounds in the Red Sea coastal plain, south Jeddah, Saudi Arabia

    Science.gov (United States)

    Taj, Rushdi J.; Aref, Mahmoud A. M.; Schreiber, B. Charlotte

    2014-08-01

    Extensive areas covered by microbial mats have been found in the upper intertidal flats and supratidal pools in the Red Sea coastal plain of south Jeddah, Saudi Arabia. Numerous microbially controlled sediment-surface morphologies are evident, such as flat cohesive mats that commonly pass into mats with wrinkles, reticulates, and tufts, together with erosion pockets and mat chips. These microbial mats form cohesive surface layers that lead to biostabilization of the sediment surface. Fluidization of the underlying sediments is due to tidal influences and pressurized gas escape from decay and photosynthesis of microbial mats and causes deformation and rupture of the cohesive surface mat layer via vertical and sub-vertical pipes. Extrusion of fluidized sediments and water through these pipes leads to redeposition of sediment grains above the surface mat layer to form sand volcanoes and mounds. Most of the sand volcanoes present in the intertidal flats and supratidal pools show a symmetrical morphology, whereas in tidal channels asymmetrical forms are more common. Extrusion of underlying sediments through several adjacent vents leads to coalescence of sand volcanoes to form sand mounds. In this study sand volcanoes are also compared with other cone-like features from the Red Sea, such as gas domes and crab mounds. This comparison should help in differentiating similar cone-like features associated with microbial mats in the rock record.

  19. Flora of Bokor National Park V: Two new species of Machilus (Lauraceae), M. bokorensis and M. brevipaniculata

    OpenAIRE

    Yahara, Tetsukazu; Tagane, Shuichiro; Mase, Keiko; Chhang, Phourin; Toyama,Hironori

    2016-01-01

    Two new species, Machilus bokorensis Yahara & Tagane and M. brevipaniculata Yahara & Tagane (Lauraceae) are described from Bokor National Park, Cambodia with their illustrations and DNA barcodes of the two plastid regions of rbcL and matK and the nuclear region of ITS.

  20. Invasive species

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a summary of management activities and research related to invasive species on Neal Smith National Wildlife Refuge between 1992 and 2009. As part of the...

  1. Morphological and genomic characterization of Filobasidiella depauperata: a homothallic sibling species of the pathogenic cryptococcus species complex.

    Science.gov (United States)

    Rodriguez-Carres, Marianela; Findley, Keisha; Sun, Sheng; Dietrich, Fred S; Heitman, Joseph

    2010-01-01

    The fungal species Cryptococcus neoformans and Cryptococcus gattii cause respiratory and neurological disease in animals and humans following inhalation of basidiospores or desiccated yeast cells from the environment. Sexual reproduction in C. neoformans and C. gattii is controlled by a bipolar system in which a single mating type locus (MAT) specifies compatibility. These two species are dimorphic, growing as yeast in the asexual stage, and producing hyphae, basidia, and basidiospores during the sexual stage. In contrast, Filobasidiella depauperata, one of the closest related species, grows exclusively as hyphae and it is found in association with decaying insects. Examination of two available strains of F. depauperata showed that the life cycle of this fungal species shares features associated with the unisexual or same-sex mating cycle in C. neoformans. Therefore, F. depauperata may represent a homothallic and possibly an obligately sexual fungal species. RAPD genotyping of 39 randomly isolated progeny from isolate CBS7855 revealed a new genotype pattern in one of the isolated basidiospores progeny, therefore suggesting that the homothallic cycle in F. depauperata could lead to the emergence of new genotypes. Phylogenetic analyses of genes linked to MAT in C. neoformans indicated that two of these genes in F. depauperata, MYO2 and STE20, appear to form a monophyletic clade with the MATa alleles of C. neoformans and C. gattii, and thus these genes may have been recruited to the MAT locus before F. depauperata diverged. Furthermore, the ancestral MATa locus may have undergone accelerated evolution prior to the divergence of the pathogenic Cryptococcus species since several of the genes linked to the MATa locus appear to have a higher number of changes and substitutions than their MATalpha counterparts. Synteny analyses between C. neoformans and F. depauperata showed that genomic regions on other chromosomes displayed conserved gene order. In contrast, the genes

  2. Morphological and genomic characterization of Filobasidiella depauperata: a homothallic sibling species of the pathogenic cryptococcus species complex.

    Directory of Open Access Journals (Sweden)

    Marianela Rodriguez-Carres

    Full Text Available The fungal species Cryptococcus neoformans and Cryptococcus gattii cause respiratory and neurological disease in animals and humans following inhalation of basidiospores or desiccated yeast cells from the environment. Sexual reproduction in C. neoformans and C. gattii is controlled by a bipolar system in which a single mating type locus (MAT specifies compatibility. These two species are dimorphic, growing as yeast in the asexual stage, and producing hyphae, basidia, and basidiospores during the sexual stage. In contrast, Filobasidiella depauperata, one of the closest related species, grows exclusively as hyphae and it is found in association with decaying insects. Examination of two available strains of F. depauperata showed that the life cycle of this fungal species shares features associated with the unisexual or same-sex mating cycle in C. neoformans. Therefore, F. depauperata may represent a homothallic and possibly an obligately sexual fungal species. RAPD genotyping of 39 randomly isolated progeny from isolate CBS7855 revealed a new genotype pattern in one of the isolated basidiospores progeny, therefore suggesting that the homothallic cycle in F. depauperata could lead to the emergence of new genotypes. Phylogenetic analyses of genes linked to MAT in C. neoformans indicated that two of these genes in F. depauperata, MYO2 and STE20, appear to form a monophyletic clade with the MATa alleles of C. neoformans and C. gattii, and thus these genes may have been recruited to the MAT locus before F. depauperata diverged. Furthermore, the ancestral MATa locus may have undergone accelerated evolution prior to the divergence of the pathogenic Cryptococcus species since several of the genes linked to the MATa locus appear to have a higher number of changes and substitutions than their MATalpha counterparts. Synteny analyses between C. neoformans and F. depauperata showed that genomic regions on other chromosomes displayed conserved gene order. In

  3. Functional polyaniline nanofibre mats for human adipose-derived stem cell proliferation and adhesion

    International Nuclear Information System (INIS)

    Conductive polymer poly(aniline-co-m-aminobenzoic acid) (P(ANI-co-m-ABA)) and polyaniline (PANI) were blended with a biodegradable, biocompatible polymer, poly(L-lactic acid) and were electrospun into nanofibres to investigate their potential application as a scaffold for human adipose-derived stem cells (hASCs). These polymers, in both conductive and non-conductive form, were electrospun with average fibre diameters of less than 400 nm. Novel nanoindentation results obtained on the individual nanofibres revealed that the elastic moduli of the nanofibres are much higher at the surface (4–10 GPa, hmax max >75 nm). The composite nanofibres showed great promise as a scaffold for hASCs as they supported the cell adhesion and proliferation. After 1 week of cell culture hASCs were well spread on the substrates with abundant focal adhesions. The electrospun mats provide the cells with comparably stiff, sub-micron sized fibres as anchoring points on a substrate of high porosity. The conductive nature of these composite nanofibres offers exciting opportunities for electrical stimulation of the cells. - Highlights: ► Polyaniline and its copolymer's nanofibres were prepared by electrospinning. ► The elastic modulus of a single polyaniline composite nanofibres were determined. ► Elastic moduli of the nanofibres are much higher at the surface than the inner core. ► The electrospun mats supported the cell adhesion and proliferation. ► The nanofibres show great promise as a scaffold for adipose derived stem cells

  4. Phosphorus 32 cycling in the root-litter mat of Pernambuco atlantic coastal forest, Brazil

    International Nuclear Information System (INIS)

    We propose a compartmental model to describe P cycling in the root-litter mat and surface mineral soil of an Atlantic coastal forest. Considerable amounts of P accumulate in this root-litter mat, relative to available P in the underlying mineral soil. We studied the mechanisms responsible for P retention five days after addition of sup(32)P on the surface of the 02 horizon. Total sup(31)P and sup(32)P were determined in leaves, humus, mineral soil and roots. In addition, we determined sup(31)P and sup(32)P in the solution and microbial biomass of the humus material. Fluxes of sup(31)P were obtained from published data and from experimental results of sup(32)P distribution among compartments. The main fluxes taking P out from the soils solution were uptake by the microbial biomass and sorption by the humus (12.9 e 5.2 mg P m sup(-2) week sup(-1), respectively), while the mean flux into the roots was 3.1 mg P m sup(-2) week sup(-1). The main compartment responsible for P accumulation was the humus+fragments, which had the highest P content (61% of total P in the forest floor) and the longest turnover time (15.5 months). (author)

  5. Fabrication of polyaniline/carboxymethyl cellulose/cellulose nanofibrous mats and their biosensing application

    International Nuclear Information System (INIS)

    Graphical abstract: - Highlights: • PANI nanorods have been grown onto the surface of CMC/cellulose nanofibers for the fabrication of biosensor substrate material. • The proposed laccase biosensor exhibited a low detection limit and high sensitivity in the detection of catechol. • Hierarchical PANI/CMC/cellulose nanofibers are the promising material in the design of high-efficient biosensors. - Abstract: We report a facile approach to synthesizing and immobilizing polyaniline nanorods onto carboxymethyl cellulose (CMC)-modified cellulose nanofibers for their biosensing application. Firstly, the hierarchical PANI/CMC/cellulose nanofibers were fabricated by in situ polymerization of aniline on the CMC-modified cellulose nanofiber. Subsequently, the PANI/CMC/cellulose nanofibrous mat modified with laccase (Lac) was used as biosensor substrate material for the detection of catechol. PANI/CMC/cellulose nanofibers with highly conductive and three dimensional nanostructure were characterized by scanning electron microscopy (SEM), transmission electron microscope (TEM), Fourier transform infrared spectra (FT-IR), cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). Under optimum conditions, the Lac/PANI/CMC/cellulose/glassy carbon electrode (GCE) exhibited a fast response time (within 8 s), a linear response range from 0.497 μM to 2.27 mM with a high sensitivity and low detection limit of 0.374 μM (3σ). The developed biosensor also displayed good repeatability, reproducibility as well as selectivity. The results indicated that the composite mat has potential application in enzyme biosensors

  6. Matérn-based nonstationary cross-covariance models for global processes

    KAUST Repository

    Jun, Mikyoung

    2014-07-01

    Many spatial processes in environmental applications, such as climate variables and climate model errors on a global scale, exhibit complex nonstationary dependence structure, in not only their marginal covariance but also their cross-covariance. Flexible cross-covariance models for processes on a global scale are critical for an accurate description of each spatial process as well as the cross-dependences between them and also for improved predictions. We propose various ways to produce cross-covariance models, based on the Matérn covariance model class, that are suitable for describing prominent nonstationary characteristics of the global processes. In particular, we seek nonstationary versions of Matérn covariance models whose smoothness parameters vary over space, coupled with a differential operators approach for modeling large-scale nonstationarity. We compare their performance to the performance of some existing models in terms of the aic and spatial predictions in two applications: joint modeling of surface temperature and precipitation, and joint modeling of errors in climate model ensembles. © 2014 Elsevier Inc.

  7. Poly-m-aramid nanofiber mats: Production for application as structural modifiers in CFRP laminates

    Science.gov (United States)

    Mazzocchetti, Laura; D'Angelo, Emanuele; Benelli, Tiziana; Belcari, Juri; Brugo, Tommaso Maria; Zucchelli, Andrea; Giorgini, Loris

    2016-05-01

    Poly(m-phenylene isophtalamide) electrospun nanofibrous membranes were produced to be used as structural reinforcements for carbon fiber reinforced composites production. In order for the polymer to be electrospun, it needs however to be fully solubilized, so the addition of some salts is required to help disrupt the tight macromolecular packing based on intra- and inter-molecular hydrogen bonding. Such salts may also contribute to the electrospinnability of the overall solution, since the provide it with a higher conductivity, whatever the solvent might be. The salt haobwever stays in the final nanofibrous mat. The membranes containing the salt are also observed to be highly hygroscopic, with a water content up to 26%, in the presence of 20%wt LiCl in the nanofibrous mat. When those membranes were interleaved among prepregs to produce a laminates, the obtained composite displayed thermal properties comparable to those of a reference nanofiber-free composite, though the former showed also easier delamination. Hence the removal of the hygroscopic salt was performed, that lead to thinner membranes, whose water content matched that of the pristine polymer. The washing step induced a thinning of the layers and of the fibers diameters, though no fiber shrinking nor membrane macroscopic damages were observed. These preliminary encouraging results thus pave the way to a deeper study of the optimized condition for producing convenient poly(m-phenylene isophtalamide) electrospun nanofibrous membranes to be used for carbon fiber reinforced composites structural modification.

  8. A novel procedure to measure the antioxidant capacity of Yerba maté extracts

    Directory of Open Access Journals (Sweden)

    Vanessa Graciela Hartwig

    2012-03-01

    Full Text Available Yerba maté extracts have in vitro antioxidant capacity attributed to the presence of polyphenolic compounds, mainly chlorogenic acids and dicaffeoylquinic acid derivatives. DPPH is one of the most used assays to measure the antioxidant capacity of pure compounds and plant extracts. It is difficult to compare the results between studies because this assay is applied in too many different conditions by the different research groups. Thus, in order to assess the antioxidant capacity of yerba maté extracts, the following procedure is proposed: 100 µL of an aqueous dilution of the extracts is mixed in duplicate with 3.0 mL of a DPPH 'work solution in absolute methanol (100 µM.L-1, with an incubation time of 120 minutes in darkness at 37 ± 1 °C, and then absorbance is read at 517 nm against absolute methanol. The results should be expressed as ascorbic acid equivalents or Trolox equivalents in mass percentage (g% dm, dry matter in order to facilitate comparisons. The AOC of the ethanolic extracts ranged between 12.8 and 23.1 g TE % dm and from 9.1 to 16.4 g AAE % dm. The AOC determined by the DPPH assay proposed in the present study can be related to the total polyphenolic content determined by the Folin-Ciocalteu assay.

  9. Annealing polymer nanofibrous nanocomposite mats via photothermal heating: effects on overall crystallinity, morphology, and mechanical properties

    Science.gov (United States)

    Gorga, Russell; Clarke, Laura; Bochinski, Jason; Viswanath, Vidya; Maity, Somsubhra

    2014-03-01

    Metal nanoparticles embedded within polymeric systems can be made to act as localized heat sources thereby aiding in-situ polymer processing. This is made possible by the surface plasmon resonance mediated photothermal effect of metal nanoparticles, wherein incident light absorbed by the nanoparticle generates a non-equilibrium electron distribution which subsequently transfers this energy into the surrounding medium, resulting in a temperature increase in the immediate region around the particle. Here we demonstrate this effect in polyethylene oxide-gold nanoparticle electrospun nanofibrous mats, which have been annealed at temperatures above the glass transition. A non-contact temperature measurement technique utilizing embedded fluorophores (perylene) has been used to monitor the average temperature within samples. The effect of annealing methods (conventional and photothermal) and annealing conditions (temperature and time) on the fiber morphology, overall crystallinity, and mechanical properties is discussed. In conclusion we demonstrate that the specificity of plasmonic heating coupled with the inside-outside approach of annealing presents a unique tool to improve crystallinity, and therefore mechanical properties, of the polymer mats while maintaining the unique nanofibrous morphologies. Supported by the National Science Foundation (CMMI-1069108).

  10. Fabrication of polyaniline/carboxymethyl cellulose/cellulose nanofibrous mats and their biosensing application

    Energy Technology Data Exchange (ETDEWEB)

    Fu, Jiapeng, E-mail: firgexiao@sina.cn; Pang, Zengyuan, E-mail: pangzengyuan1212@163.com; Yang, Jie, E-mail: young1993@126.com; Huang, Fenglin, E-mail: flhuang@jiangnan.edu.cn; Cai, Yibing, E-mail: yibingcai@jiangnan.edu.cn; Wei, Qufu, E-mail: qfwei@jiangnan.edu.cn

    2015-09-15

    Graphical abstract: - Highlights: • PANI nanorods have been grown onto the surface of CMC/cellulose nanofibers for the fabrication of biosensor substrate material. • The proposed laccase biosensor exhibited a low detection limit and high sensitivity in the detection of catechol. • Hierarchical PANI/CMC/cellulose nanofibers are the promising material in the design of high-efficient biosensors. - Abstract: We report a facile approach to synthesizing and immobilizing polyaniline nanorods onto carboxymethyl cellulose (CMC)-modified cellulose nanofibers for their biosensing application. Firstly, the hierarchical PANI/CMC/cellulose nanofibers were fabricated by in situ polymerization of aniline on the CMC-modified cellulose nanofiber. Subsequently, the PANI/CMC/cellulose nanofibrous mat modified with laccase (Lac) was used as biosensor substrate material for the detection of catechol. PANI/CMC/cellulose nanofibers with highly conductive and three dimensional nanostructure were characterized by scanning electron microscopy (SEM), transmission electron microscope (TEM), Fourier transform infrared spectra (FT-IR), cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). Under optimum conditions, the Lac/PANI/CMC/cellulose/glassy carbon electrode (GCE) exhibited a fast response time (within 8 s), a linear response range from 0.497 μM to 2.27 mM with a high sensitivity and low detection limit of 0.374 μM (3σ). The developed biosensor also displayed good repeatability, reproducibility as well as selectivity. The results indicated that the composite mat has potential application in enzyme biosensors.

  11. Training traditional birth attendants to use misoprostol and an absorbent delivery mat in home births.

    Science.gov (United States)

    Prata, Ndola; Quaiyum, Md Abdul; Passano, Paige; Bell, Suzanne; Bohl, Daniel D; Hossain, Shahed; Azmi, Ashrafi Jahan; Begum, Mohsina

    2012-12-01

    A 50-fold disparity in maternal mortality exists between high- and low-income countries, and in most contexts, the single most common cause of maternal death is postpartum hemorrhage (PPH). In Bangladesh, as in many other low-income countries, the majority of deliveries are conducted at home by traditional birth attendants (TBAs) or family members. In the absence of skilled birth attendants, training TBAs in the use of misoprostol and an absorbent delivery mat to measure postpartum blood loss may strengthen the ability of TBAs to manage PPH. These complementary interventions were tested in operations research among 77,337 home births in rural Bangladesh. The purpose of this study was to evaluate TBAs' knowledge acquisition, knowledge retention, and changes in attitudes and practices related to PPH management in home births after undergoing training on the use of misoprostol and the blood collection delivery mat. We conclude that the training was highly effective and that the two interventions were safely and correctly used by TBAs at home births. Data on TBA practices indicate adherence to protocol, and 18 months after the interventions were implemented, TBA knowledge retention remained high. This program strengthens the case for community-based use of misoprostol and warrants consideration of this intervention as a potential model for scale-up in settings where complete coverage of skilled birth attendants (SBAs) remains a distant goal. PMID:22921713

  12. Results from the European Integrated Project '' New Materials for Extreme Environments (ExtreMat) ''

    International Nuclear Information System (INIS)

    The goal of the European Integrated Project '' ExtreMat '' is to provide and to industrialize new materials and their compounds for applications in extreme environments that are beyond reach with incremental materials development only. The R(and)D activities in this project aim to provide a) self-passivating protection materials for sensitive structures operated in physico-chemically aggressive environments at high temperatures; b) new heat sink materials with the capability of very efficient heat removal, often at very high temperature level; c) radiation resistant materials for very high operation temperatures; d) new processing routes for complex heterogeneous compounds that can be operated in extreme environments. Key applications for these new materials are in the sectors of fusion, advanced fission, space, and electronic applications. Further use of these materials is expected in spin-off fields, such as brake applications and energy conversion. The project started in December 2004 for a duration of five years and is supported by the European Community. The 37 project participants are from 13 EU member states and include 6 universities, 7 research institutes, 10 research centres and 14 industrial companies. Research results regarding the development of materials for application in nuclear fusion, especially on protection, heat sink, and radiation resistant materials will be presented. A view to other applications of these materials in the fields of fission, space and electronics will be given in the presentation. ExtreMat Project Partners: see http://www.extremat.org/. (author)

  13. AN EXPERIMENT AT HiRadMat: IRRADIATION OF HIGH-Z MATERIALS

    CERN Document Server

    Blanco Sancho, J; Schmidt, R; Tahir, N A

    2011-01-01

    Calculations of the impact of dense high intensity proton beams into material has been presented in several papers [1, 2, 3]. This paper presents the plans for an experiment to validate the theoretical results. The experiment will be performed at the High Radiation to Materials (HiRadMat) facility at the CERN-SPS. The HiRadMat facility is dedi- cated to shock beam impact experiments. It allows testing of accelerator components, in particular those of LHC, to the impact of high-intensity pulsed beams. This facility will allow to study High Energy Density physics as the en- ergy density will be high enough to create strongly coupled plasma in the core of high-Z materials (copper, tungsten) and to produce strong enough pressure waves to create a density depletion channel along the beam axis (tunneling effect) [4, 5]. The paper introduces the layout of the ex- periment and the instrumentation to detect tunneling of pro- tons through the target as well as the expected results based on simulations.

  14. An Experiment at HiRadMat: Irradiation of high-Z Materials

    CERN Document Server

    Blanco Sancho, J; Schmidt, R; Tahir, N A

    2011-01-01

    Calculations of the impact of dense high intensity proton beams into material has been presented in several papers [1,2,3]. This paper presents the plans for an experiment to validate the theoretical results. The experiment will be performed at the High Radiation to Materials (HiRadMat) facility at the CERN-SPS. The HiRadMat facility is dedicated to shock beam impact experiments. It allows testing of accelerator components, in particular those of LHC, to the impact of high-intensity pulsed beams. This facility will allow to study High Energy Density physics as the energy density will be high enough to create strongly coupled plasma in the core of high-Z materials (copper, tungsten) and to produce strong enough pressure waves to create a density depletion channel along the beam axis (tunneling effect) [4,5]. The paper introduces the layout of the experiment and the instrumentation to detect tunneling of protons through the target as well as the expected results based on simulations.

  15. Removal of nitrogen from wastewater with perennial ryegrass/artificial aquatic mats biofilm combined system

    Institute of Scientific and Technical Information of China (English)

    Chongjun Chen; Rui Zhang; Liang Wang; Weixiang Wu; Yingxu Chen

    2013-01-01

    To develop a cost-effective combined phytoremediation and biological process,a combined perennial ryegrass/artificial aquatic mat biofilm reactor was used to treat synthetic wastewater.Influent ammonium loading,reflux ratio,hydraulic retention time (HRT) and temperature all had significant effects on the treatment efficiency.The results indicated that the effluent concentration of ammonium increased with increasing influent ammonium loading.The reactor temperature played an important role in the nitrification process.The ammonium removal efficiency significantly decreased from 80% to 30%-50% when the reactor temperature dropped to below 10℃.In addition,the optimal nitrogen removal condition was a reflux ratio of 2.The nitrate and ammonium concentration of the effluent were consistent with the HRT of the combined system.The chemical oxygen demand (COD) removal efficiency was at a high level during the whole experiment,being almost 80% after the start-up,and then mostly above 90%.The direct uptake of N by the perennial ryegrass accounted for 18.17% of the total N removal by the whole system.The perennial ryegrass absorption was a significant contributor to nitrogen removal in the combined system.The result-illustrated that the combined perennial ryegrass/artificial aquatic mat biofilm reactor demonstrated good performance in ammonium,total N and COD removal.

  16. First Year of Operations in the HiRadMat Irradiation Facility at CERN

    CERN Document Server

    Fabich, A; Conan, N; Cornelis, K; De Paoli, D; Efthymiopoulos, I; Evrard, S; Gaillard, H; Grenard, J L; Lazzaroni, M; Pardons, A; Seraphin, Y; Theis, C; Weiss, K

    2013-01-01

    The HiRadMat facility [1] is designed to provide a test area where the effect of high-intensity pulsed beams on materials or accelerator component assemblies can be studied. The facility is not designed for long-term irradiation studies but rather for single pulse experiments to study the onset of material damage. The designed target is ten experiments per year, with 1015 protons or about 30 high intensity pulses per experiment, thus a total of 1016 protons per year for the whole facility. It is judged that for the majority of the experiments a small number of high intensity pulses would be sufficient in order to investigate the damage to the test samples whilst keeping the activation levels reasonably low such that post-irradiation tests could be performed after a reasonable cool-down period. The HiRadMat facility is situated in the former West Area Neutrino Facility (WANF) target tunnel and is about 35 m below ground. It takes the fast extracted beam from the long straight section LSS6 of SPS, the same use...

  17. Supercritical carbon dioxide extraction of methylxanthines from maté tea leaves

    Directory of Open Access Journals (Sweden)

    M.D.A. Saldaña

    2000-09-01

    Full Text Available Methylxanthines are alkaloids found in natural products such as tea, coffee and guaraná. These alkaloids are commonly used in cola drinks and pharmaceutical products due principally to their stimulant and diuretic effects on the human organism. In this work, experimental data on the supercritical CO2 extraction of caffeine, theophylline and theobromine from herbal maté tea, a beverage traditionally consumed by the gauchos of southern Brazil, the Argentine, Paraguay and Uruguay, were obtained using high pressure extraction equipment that allows adequate control of temperature and pressure. The continuous extraction/fractionation of maté tea leaves, Ilex paraguariensis in natura using carbon dioxide was carried out at 313.2 and 343.2 K and pressures of 13.8 and 25.5 MPa. Extraction/fractionation curves revealed the large influence of temperature and pressure on extraction yield. CO2 was also found to show a higher selectivity for caffeine than for theophylline and theobromine.

  18. Community Structure Comparisons of Hydrothermal Vent Microbial Mats Along the Mariana Arc and Back-arc

    Science.gov (United States)

    Hager, K. W.; Fullerton, H.; Moyer, C. L.

    2015-12-01

    Hydrothermal vents along the Mariana Arc and back-arc represent a hotspot of microbial diversity that has not yet been fully recognized. The Mariana Arc and back-arc contain hydrothermal vents with varied vent effluent chemistry and temperature, which translates to diverse community composition. We have focused on iron-rich sites where the dominant primary producers are iron oxidizing bacteria. Because microbes from these environments have proven elusive in culturing efforts, we performed culture independent analysis among different microbial communities found at these hydrothermal vents. Terminal-restriction fragment length polymorphism (T-RFLP) and Illumina sequencing of small subunit ribosomal gene amplicons were used to characterize community members and identify samples for shotgun metagenomics. Used in combination, these methods will better elucidate the composition and characteristics of the bacterial communities at these hydrothermal vent systems. The overarching goal of this study is to evaluate and compare taxonomic and metabolic diversity among different communities of microbial mats. We compared communities collected on a fine scale to analyze the bacterial community based on gross mat morphology, geography, and nearby vent effluent chemistry. Taxa richness and evenness are compared with rarefaction curves to visualize diversity. As well as providing a survey of diversity this study also presents a juxtaposition of three methods in which ribosomal small subunit diversity is compared with T-RFLP, next generation amplicon sequencing, and metagenomic shotgun sequencing.

  19. Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

    Directory of Open Access Journals (Sweden)

    Richard Allen White III

    2015-09-01

    Full Text Available Within the subarctic climate of Clinton Creek, Yukon, Canada, lies an abandoned and flooded open-pit asbestos mine that harbors rapidly growing microbialites. To understand their formation we completed a metagenomic community profile of the microbialites and their surrounding sediments. Assembled metagenomic data revealed that bacteria within the phylum Proteobacteria numerically dominated this system, although the relative abundances of taxa within the phylum varied among environments. Bacteria belonging to Alphaproteobacteria and Gammaproteobacteria were dominant in the microbialites and sediments, respectively. The microbialites were also home to many other groups associated with microbialite formation including filamentous cyanobacteria and dissimilatory sulfate-reducing Deltaproteobacteria, consistent with the idea of a shared global microbialite microbiome. Other members were present that are typically not associated with microbialites including Gemmatimonadetes and iron-oxidizing Betaproteobacteria, which participate in carbon metabolism and iron cycling. Compared to the sediments, the microbialite microbiome has significantly more genes associated with photosynthetic processes (e.g., photosystem II reaction centers, carotenoid and chlorophyll biosynthesis and carbon fixation (e.g., CO dehydrogenase. The Clinton Creek microbialite communities had strikingly similar functional potentials to non-lithifying microbial mats from the Canadian High Arctic and Antarctica, but are functionally distinct, from non-lithifying mats or biofilms from Yellowstone. Clinton Creek microbialites also share metabolic genes (R2 0.900. These metagenomic profiles from an anthropogenic microbialite-forming ecosystem provide context to microbialite formation on a human-relevant timescale.

  20. Replacement of asphalt in glass-mat roofing shingles. Final report, March 1980-March 1982

    Energy Technology Data Exchange (ETDEWEB)

    Bastian, E.J. Jr.; McCandlish, E.F.K.; Sieling, F.W.

    1982-05-01

    Up to 50% of the asphalt now used in glass-mat shingles may be replaceable by increasing the mineral filler content and/or extending the asphalt with elemental sulfur. Highly filled, lab-made shingles containing asphalt flux perform acceptably in fire tests, slide tests, blister tests, granule adhesion, and freeze-thaw cracking tests. They have high stain and scuff potential and are too limp for convenient application around 110/sup 0/F. Lab-made shingles containing asphalt saturant are satisfactory in most respects, but they are still too limp for high temperature application. Various methods to stiffen highly filled shingles were tried. The most promising method is the use of two lightweight glass mats, laminated together with asphalt. Shingles made in this way have handling properties superior to conventional shingles and are economically feasible. In the area of replacement of asphalt with sulfur, five small-scale plant trials produced shingles which, after a year of outdoor exposure, are satisfactory. On the basis of preliminary measurements, no important difference in tensile or flexural properties between asphalt and sulfur/asphalt shingles is expected. In Weather-Ometer tests, sulfur/asphalt tends to have lower durability than conventional coating. This is confirmed by outside weathering of sulfur/asphalt films. By choosing the correct asphalt softening point and correct filler level, sulfur/asphalt/filler can have equal durability to conventional asphalt/filler combinations.

  1. Antimicrobial application of nanofibrous mats self-assembled with chitosan and epigallocatechin gallate.

    Science.gov (United States)

    Tian, Jing; Tu, Hu; Shi, Xiaowen; Wang, Xiaoying; Deng, Hongbing; Li, Bin; Du, Yumin

    2016-09-01

    Cellulose electrospun nanofibrous mats coated with bilayers of chitosan (CS) and epigallocatechin gallate (EGCG) or with bilayers of CS-rectorite (REC) composite (CS-REC) and EGCG were fabricated via layer-by-layer (LBL) self-assembly technique. LBL-structured cellulose nanofibers still maintained three-dimension fiber structure according to the observation from scanning electron microscopy images. The average diameter of nanofibers were enlarged with the addition of REC. X-ray photoelectron spectroscopy results confirmed the deposition of CS and CS-REC onto the corresponding mats. The tensile strength and rate of elongation at break of LBL-structured nanofibers had no difference from those of uncoated nanofibers. The encapsulation efficiency and loading capacity of nanofibers were enhanced in the presence of REC. In addition the in-vitro cumulative release profiles of EGCG indicate that the addition of REC delayed the release of EGCG. Antimicrobial assay demonstrated the inhibitory effects of CS and EGCG on the growth of Staphylococcus aureus. Meanwhile the CS-REC composites improved the antimicrobial effects of CS and EGCG by adsorption of bacteria to the surface of REC then enhancement of exposure of bacteria to EGCG and the matrix of CS. PMID:27288819

  2. Electrospun antimicrobial hybrid mats: Innovative packaging material for meat and meat-products.

    Science.gov (United States)

    Amna, Touseef; Yang, Jieun; Ryu, Kyeong-Seon; Hwang, I H

    2015-07-01

    To prevent the development and spread of spoilage/pathogenic microorganisms via meat foodstuffs, antimicrobial nanocomposite packaging can serve as a potential alternative. The objective of this study was to develop a new class of antimicrobial hybrid packaging mat composed of biodegradable polyurethane supplemented with virgin olive oil and zinc oxide via electrospinning. Instead of mixing antimicrobial compounds directly with food, incorporation in packaging materials allows the functional effect at food surfaces where microbial activity is localized. The nanofibers were characterized by SEM, EDX, XRD and TEM. The antibacterial activity was tested against two common foodborne pathogens viz., Staphylococcus aureus and Salmonella typhimurium. The present results indicated that incorporation of olive oil in the polymer affected morphology of PU nanofibers and nanocomposite packaging were able to inhibit growth of pathogens. Thus; as-spun mat can be used as prospective antimicrobial packaging, which potentially reduces contamination of meat/meat-products. Moreover, introduced biodegradable packaging for meat products could serve to replace PVC films and simultaneously help to protect natural environment. PMID:26139931

  3. 应用 matK 基因鉴别青天葵及其常见混伪品%Apply matK gene to identify Nervilia fordii and its common adulterants

    Institute of Scientific and Technical Information of China (English)

    黄琼林; 梁凌玲; 何瑞; 詹若挺; 陈蔚文

    2014-01-01

    In order to establish the novel method on distinguishing Nervilia fordii and its common adulterants,matK genes from N .fordii and its adulterants were amplified and sequenced using a pair of universal primes.The results revealed that matK genes acquired from N .fordii and its adulterants contained 587 base pairs,and average GC con-tent was 32.8%.The intraspecific distances among N .fordii were 0,whereas the interspecific distance between N . fordii and its adulterants ranged from 0.016 to 0.375.The clustering tree according to Neighbor Joining method and Kimura 2-Parameter model discriminated N .fordii and its adulterants obviously.matK gene is suggested to be an effective biomarker to identify N .fordii and its common adulterants.%分析了青天葵及其混伪品 matK 序列,以期在分子水平建立青天葵及其常见混伪品的鉴别方法.采用一对通用引物对 matK 基因进行 PCR 扩增并测序,所得序列用 DNAMAN、MEGA 等软件进行分析.获得青天葵及其混伪品的 matK 基因序列长度为587 bp,平均 GC 含量为32.8%.青天葵的种内遗传距离为0,与混伪品种间遗传距离范围为0.016~0.375.基于 matK 基因序列构建的 NJ 聚类树能明显地区别青天葵及其混伪品.因此,应用 matK 基因序列可以有效鉴别青天葵及其混伪品.

  4. 应用 matK 基因鉴别青天葵及其常见混伪品%Apply matK gene to identify Nervilia fordii and its common adulterants

    Institute of Scientific and Technical Information of China (English)

    黄琼林; 梁凌玲; 何瑞; 詹若挺; 陈蔚文

    2014-01-01

    分析了青天葵及其混伪品 matK 序列,以期在分子水平建立青天葵及其常见混伪品的鉴别方法.采用一对通用引物对 matK 基因进行 PCR 扩增并测序,所得序列用 DNAMAN、MEGA 等软件进行分析.获得青天葵及其混伪品的 matK 基因序列长度为587 bp,平均 GC 含量为32.8%.青天葵的种内遗传距离为0,与混伪品种间遗传距离范围为0.016~0.375.基于 matK 基因序列构建的 NJ 聚类树能明显地区别青天葵及其混伪品.因此,应用 matK 基因序列可以有效鉴别青天葵及其混伪品.%In order to establish the novel method on distinguishing Nervilia fordii and its common adulterants,matK genes from N .fordii and its adulterants were amplified and sequenced using a pair of universal primes.The results revealed that matK genes acquired from N .fordii and its adulterants contained 587 base pairs,and average GC con-tent was 32.8%.The intraspecific distances among N .fordii were 0,whereas the interspecific distance between N . fordii and its adulterants ranged from 0.016 to 0.375.The clustering tree according to Neighbor Joining method and Kimura 2-Parameter model discriminated N .fordii and its adulterants obviously.matK gene is suggested to be an effective biomarker to identify N .fordii and its common adulterants.

  5. Testing the potential of proposed DNA barcodes for species identification of Zingiberaceae

    Institute of Scientific and Technical Information of China (English)

    Lin- Chun SHI; Yu-Lin LIN; Cai-Xiang XIE; Zhong-Zhi QIAN; Shi-Lin CHEN; Jin ZHANG; Jian-Ping HAN; Jing-Yuan SONG; Hui YAO; Ying-Jie ZHU; Jia-Chun LI; Zhen-Zhong WANG; Wei XIAO

    2011-01-01

    In 2009, the Consortium for the Barcode of Life (CBOL) recommended the combination of rbcL and matK as the plant barcode based on assessments of recoverability, sequencing quality, and levels of species discrimination. Subsequently, based on a study of more than 6600 samples belonging to 193 families from seven phyla, the internal transcribed spacer (ITS) 2 locus was proposed as a universal barcode sequence for all major plant taxa used in traditional herbal medicine. Neither of these two studies was based on a detailed analysis of a particular family. Here, Zingiberaceae plants, including many closely related species, were used to compare the genetic divergence and species identification efficiency of ITS2, rbcL, matK, psbK-psbI, trnH-psbA, and rpoB.The results indicate that ITS2 has the highest interspecific divergence and significant differences between inter- and intraspecific divergence, whereas matK and rbcL have much lower divergence values. Among 260 species belongingto 30 genera in Zingiberaceae, the discrimination ability of the ITS2 locus was 99.5% at the genus level and 73.1% at the species level. Thus, we propose that ITS2 is the preferred DNA barcode sequence for identifying Zingiberaceae plants.

  6. DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae).

    Science.gov (United States)

    Larranaga, Nerea; Hormaza, José I

    2015-01-01

    The DNA barcode initiative aims to establish a universal protocol using short genetic sequences to discriminate among animal and plant species. Although many markers have been proposed to become the barcode of plants, the Consortium for the Barcode of Life (CBOL) Plant Working Group recommended using as a core the combination of two portions of plastid coding region, rbcL and matK. In this paper, specific markers based on matK sequences were developed for 7 closely related Annona species of agronomic interest (Annona cherimola, A. reticulata, A. squamosa, A. muricata, A. macroprophyllata, A. glabra, and A. purpurea) and the discrimination power of both rbcL and matK was tested using also sequences of the genus Annona available in the Barcode of Life Database (BOLD) data systems. The specific sequences developed allowed the discrimination among all those species tested. Moreover, the primers generated were validated in six additional species of the genus (A. liebmanniana, A. longiflora, A. montana, A. senegalensis, A. emarginata and A. neosalicifolia) and in an interspecific hybrid (A. cherimola x A. squamosa). The development of a fast, reliable and economic approach for species identification in these underutilized subtropical fruit crops in a very initial state of domestication is of great importance in order to optimize genetic resource management. PMID:26284104

  7. Can Course Design in an Online MAT Program Promote Personalized Learning through e-Teaching and e-Learning Practices?

    Directory of Open Access Journals (Sweden)

    Barbara Schwartz-Bechet

    2012-11-01

    Full Text Available The current study sought to determine if the Master of Arts in Teaching (MAT program design promoted personalized learning in the LMS platform, Webtycho. Personalized learning provides a medium to improve efficiencies in online learning. Personalized learning is not directed or paced so much by the teacher as it is by the student's own ability and capacity to acquire knowledge [1]. A qualitative case study, paired with quantitative data, will corroborate indications, through triangulation, of some, or all, of the seven multiple intelligences learning styles, student e-learning practices demonstrated, and e-teaching practices employed, to determine if personalized learning has occurred with current MAT students. A recommendation of ways to meet the learning needs of all current and future students in the MAT program will be provided.

  8. 水性皮革消光剂的研制%Study on Water-based Matting Agent for Leather

    Institute of Scientific and Technical Information of China (English)

    孙大庆; 周炳才; 于跃

    2013-01-01

    This paper presents a method of preparing a water-based matting agent for leather.The matting effect of diflerent silica matting agent was compared. Further more the affect of additives on product stability and performance was discussed.The product was used in cowhide sofa leather finishing showed that its performance reached level of similar foreign products.%本文提出了一种水性皮革消光剂的制备方法,比较了不同二氧化硅消光剂的消光效果,讨论了助剂对产品稳定性和使用性能的影响,研制的产品用于牛皮沙发革的涂饰表明,性能达到国外同类产品水平。

  9. Polyacrylonitrile/polyaniline core/shell nanofiber mat for removal of hexavalent chromium from aqueous solution: mechanism and applications

    KAUST Repository

    Wang, Jianqiang

    2013-01-01

    Polyacrylonitrile/polyaniline core/shell nanofibers were prepared via electrospinning followed by in situ polymerization of aniline. Nanofibers with different morphology were obtained by changing the polymerization temperature. When used as absorbent for Cr(vi) ions, the core/shell nanofiber mats exhibit excellent adsorption capability. The equilibrium capacity is 24.96, 37.24, and 52.00 mg g-1 for 105, 156, and 207 mg L-1 initial Cr(vi) solution, respectively, and the adsorption capacity increases with temperature. The adsorption follows a pseudo second order kinetics model and is best fit using the Langmuir isotherm model. The mats show excellent selectivity towards Cr(vi) ions in the presence of competing ions albeit a small decrease in adsorption is observed. The mats can be regenerated and reused after treatment with NaOH making them promising candidates as practical adsorbents for Cr(vi) removal. © The Royal Society of Chemistry 2013.

  10. Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile

    Science.gov (United States)

    Fernandez, Ana B.; Rasuk, Maria C.; Visscher, Pieter T.; Contreras, Manuel; Novoa, Fernando; Poire, Daniel G.; Patterson, Molly M.; Ventosa, Antonio; Farias, Maria E.

    2016-01-01

    We combined nucleic acid-based molecular methods, biogeochemical measurements, and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity, and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions, and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea) in bulk samples, and in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity) in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB, and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum, and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems) than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity. PMID:27597845

  11. Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics.

    Science.gov (United States)

    Warden, John G; Casaburi, Giorgio; Omelon, Christopher R; Bennett, Philip C; Breecker, Daniel O; Foster, Jamie S

    2016-01-01

    Microbialite-forming communities interact with the environment and influence the precipitation of calcium carbonate through their metabolic activity. The functional genes associated with these metabolic processes and their environmental interactions are therefore critical to microbialite formation. The microbiomes associated with microbialite-forming ecosystems are just now being elucidated and the extent of shared pathways and taxa across different environments is not fully known. In this study, we profiled the microbiome of microbial communities associated with lacustrine thrombolites located in Lake Clifton, Western Australia using metagenomic sequencing and compared it to the non-lithifying mats associated with surrounding sediments to determine whether differences in the mat microbiomes, particularly with respect to metabolic pathways and environmental interactions, may potentially contribute to thrombolite formation. Additionally, we used stable isotope biosignatures to delineate the dominant metabolism associated with calcium carbonate precipitation in the thrombolite build-ups. Results indicated that the microbial community associated with the Lake Clifton thrombolites was predominantly bacterial (98.4%) with Proteobacteria, Cyanobacteria, Bacteroidetes, and Actinobacteria comprising the majority of annotated reads. Thrombolite-associated mats were enriched in photoautotrophic taxa and functional genes associated with photosynthesis. Observed δ(13)C values of thrombolite CaCO3 were enriched by at least 3.5‰ compared to theoretical values in equilibrium with lake water DIC, which is consistent with the occurrence of photoautotrophic activity in thrombolite-associated microbial mats. In contrast, the microbiomes of microbial communities found on the sandy non-lithifying sediments of Lake Clifton represented distinct microbial communities that varied in taxa and functional capability and were enriched in heterotrophic taxa compared to the thrombolite

  12. Antiobesity effects of yerba maté extract (Ilex paraguariensis) in high-fat diet-induced obese mice.

    Science.gov (United States)

    Arçari, Demétrius P; Bartchewsky, Waldemar; dos Santos, Tanila W; Oliveira, Karim A; Funck, Alexandre; Pedrazzoli, José; de Souza, Marina F F; Saad, Mario J; Bastos, Deborah H M; Gambero, Alessandra; Carvalho, Patricia de O; Ribeiro, Marcelo L

    2009-12-01

    Because the potential of yerba maté (Ilex paraguariensis) has been suggested in the management of obesity, the aim of the present study was to evaluate the effects of yerba maté extract on weight loss, obesity-related biochemical parameters, and the regulation of adipose tissue gene expression in high-fat diet-induced obesity in mice. Thirty animals were randomly assigned to three groups. The mice were introduced to standard or high-fat diets. After 12 weeks on a high-fat diet, mice were randomly assigned according to the treatment (water or yerba maté extract 1.0 g/kg). After treatment intervention, plasma concentrations of total cholesterol, high-density lipoprotein cholesterol, triglyceride, low-density lipoprotein (LDL) cholesterol, and glucose were evaluated. Adipose tissue was examined to determine the mRNA levels of several genes such as tumor necrosis factor-alpha (TNF-alpha), leptin, interleukin-6 (IL-6), C-C motif chemokine ligand-2 (CCL2), CCL receptor-2 (CCR2), angiotensinogen, plasminogen activator inhibitor-1 (PAI-1), adiponectin, resistin, peroxisome proliferator-activated receptor-gamma(2) (PPAR-gamma(2)), uncoupling protein-1 (UCP1), and PPAR-gamma coactivator-1 alpha (PGC-1 alpha). The F4/80 levels were determined by immunoblotting. We found that obese mice treated with yerba maté exhibited marked attenuation of weight gain, adiposity, a decrease in epididymal fat-pad weight, and restoration of the serum levels of cholesterol, triglycerides, LDL cholesterol, and glucose. The gene and protein expression levels were directly regulated by the high-fat diet. After treatment with yerba maté extract, we observed a recovery of the expression levels. In conclusion, our data show that yerba maté extract has potent antiobesity activity in vivo. Additionally, we observed that the treatment had a modulatory effect on the expression of several genes related to obesity. PMID:19444227

  13. Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics

    Science.gov (United States)

    Warden, John G.; Casaburi, Giorgio; Omelon, Christopher R.; Bennett, Philip C.; Breecker, Daniel O.; Foster, Jamie S.

    2016-01-01

    Microbialite-forming communities interact with the environment and influence the precipitation of calcium carbonate through their metabolic activity. The functional genes associated with these metabolic processes and their environmental interactions are therefore critical to microbialite formation. The microbiomes associated with microbialite-forming ecosystems are just now being elucidated and the extent of shared pathways and taxa across different environments is not fully known. In this study, we profiled the microbiome of microbial communities associated with lacustrine thrombolites located in Lake Clifton, Western Australia using metagenomic sequencing and compared it to the non-lithifying mats associated with surrounding sediments to determine whether differences in the mat microbiomes, particularly with respect to metabolic pathways and environmental interactions, may potentially contribute to thrombolite formation. Additionally, we used stable isotope biosignatures to delineate the dominant metabolism associated with calcium carbonate precipitation in the thrombolite build-ups. Results indicated that the microbial community associated with the Lake Clifton thrombolites was predominantly bacterial (98.4%) with Proteobacteria, Cyanobacteria, Bacteroidetes, and Actinobacteria comprising the majority of annotated reads. Thrombolite-associated mats were enriched in photoautotrophic taxa and functional genes associated with photosynthesis. Observed δ13C values of thrombolite CaCO3 were enriched by at least 3.5‰ compared to theoretical values in equilibrium with lake water DIC, which is consistent with the occurrence of photoautotrophic activity in thrombolite-associated microbial mats. In contrast, the microbiomes of microbial communities found on the sandy non-lithifying sediments of Lake Clifton represented distinct microbial communities that varied in taxa and functional capability and were enriched in heterotrophic taxa compared to the thrombolite

  14. Effect of salinity on carbon and sulfur cycles in Umm Alhool sabkha microbial mat ecosystem in Qatar

    KAUST Repository

    Al-Najjar, Mohammad

    2012-10-19

    Microbial mats are only present under extreme conditions, where grazing by higher organisms is limited. Therefore, microbial mats may provide insight into extraterrestrial life, due to their adaptations to extreme temperatures, desiccation or salinity. They are faced with a diurnal cycle with variable length based on their location, which exposes them to extreme salinity conditions (i.e., water withdrawal and high evaporation). Cyanobacteria in the photic zone of a mat ecosystem supply the other microorganism with the required organic material to produce energy and grow. Subsequently, this will reproduce the nutrients needed by the phototrophs through elemental re-mineralization. In this work, we investigated the effect of water salinity that covers the microbial mat ecosystem of Umm Alhool sabkha, Qatar, regarding the most important processes within microbial mats: photosynthesis and sulfate reduction (SR). Our results showed that both photosynthetic and sulfate reduction rates decreased with increasing the salinity. The microbial community structure, assessed by 454 pyro-sequencing, revealed that the cyanobacterial community structure changed in response to the change in salinity. This was not the case for the sulfate reducer community structure, which stayed as it is in the mats incubated at different salinities. Therefore, we speculate that salinity affects the photosynthetic community structure, and consequently affects the photosynthetic activity of the whole ecosystem. However, sulfate reduction rates decreased due to less organic material supply from the upper layers and not due to change in microbial community structure of SR. Other factors such as the activity of the enzymes could also have an effect on SRR, but it was not investigated in this study.

  15. Spatial and temporal diversity of microbial mats in the shallow-water hydrothermal system of Milos Island (Greece)

    Science.gov (United States)

    Giovannelli, D.; Foustoukos, D.; Le Bris, N.; Sievert, S. M.; Yucel, M.; Vetriani, C.

    2014-12-01

    Shallow-water hydrothermal vents are ubiquitous but poorly studied geothermal environments. The shallow-water hydrothermal system of Milos Island is a unique study site with vents exhibiting steep geothermal gradients in the presence of light that allows the co-occurrence of photosynthesis and chemosynthesis. The active hydrothermal emissions of the Milos hydrothermal system support complex microbial mats, which are fundamental in engineering the environmental niche in which extremophiles thrive. Because of the shallow depth, the mat community is wiped out during every major storm, when swell and wave action increase, and then it reconstitutes itself over a brief period of time (days). While most studies are focused on the diversity of the community residing in the underlying sediments, little information is available on the diversity and functioning of the mat community, and how it responds to abrupt geodynamic events. Here we report the results of a joint geochemical and microbiological survey of the microbial mats of Milos island, and analyze the spatial and temporal evolution of the mat community following a major storm. Our results show that the community is dominated by Epsilonproteobacteria, although significant variability is present within the systemm. The observed variability correlates with spatial profiles and in situ measurement of temperature and sulfide carried out over a 6 days periods, showing that tides, winds, and abrupt geodynamic events generate intermittent mixing conditions lasting for several hours to days. Diversity and metagenomic analyses of the mature mat provide further information on the metabolic potential of the community and on the influence of environmental factors on ecosystem functioning. Our work lays the basis for studies aimed at resolving the spatial and temporal dynamics of chemoautotrophic microbial communities in shallow-water hydrothermal systems.

  16. RESIDUAL STRENGTH OF CHOPPED STRAND MAT GLASS FIBRE/EPOXY COMPOSITE STRUCTURES: EFFECT OF TEMPERATURE AND WATER ABSORPTION

    OpenAIRE

    Rahman, M M; F. Tarlochan; K. J. T. Jeffrey

    2011-01-01

    The residual strength of chopped strand mat glass fibre/epoxy composites following exposure to different hygrothermal conditions was investigated. All residual tests were carried out according to ASTM D 3479 and D 3039 on tension-tension fatigue with a frequency of 5 Hz, a stress ratio of R= 0.5and maximum stress σmax = 60 MPa. The residual strength curves were used to investigate the strength of chopped strand mat glass fibre/epoxy under the effect of temperature and the interactive environm...

  17. Propulsion System Simulation Using the Toolbox for the Modeling and Analysis of Thermodynamic System (T-MATS)

    Science.gov (United States)

    Chapman, Jeffryes W.; Lavelle, Thomas M.; May, Ryan D.; Litt, Jonathan S.; Guo, Ten-Huei (OA)

    2014-01-01

    A simulation toolbox has been developed for the creation of both steady-state and dynamic thermodynamic software models. This presentation describes the Toolbox for the Modeling and Analysis of Thermodynamic Systems (T-MATS), which combines generic thermodynamic and controls modeling libraries with a numerical iterative solver to create a framework for the development of thermodynamic system simulations, such as gas turbine engines. The objective of this presentation is to present an overview of T-MATS, the theory used in the creation of the module sets, and a possible propulsion simulation architecture.

  18. Procesos configurativos: de la trama a la noción de campo en los "mat buildings"

    OpenAIRE

    Farini de Orleans-Borbón, Elena

    2013-01-01

    La presente tesis aborda el estudio sobre los llamados mat buildings, que surgen entre los años cincuenta y sesenta del pasado siglo. Los mat buildings, también llamados “edificios esteras” o “edificios alfombras”, nacen en gran parte como consecuencia de los desacuerdos e insatisfacciones de los CIAM con el reduccionismo funcionalista y los principios de compartimentación funcional. Estos nuevos modelos remplazan el modelo de ciudad entendido como una colección de edificios individuales por ...

  19. PHYLOGENY OF Litsea (LAURACEAE INFERRED FROM SEQUENCES OF THE CHLOROPLAST GENES matK AND ndhF

    Directory of Open Access Journals (Sweden)

    Izu Andry Fijridiyanto

    2010-07-01

    Full Text Available Hubungan kekerabatan (filogenetik Litsea dan marga-marga yang berdekatan (Actinodaphne, Lindera and Neolitsea dari suku Lauraceae telah diamati dengan menggunakan data molekular. Analisis dilakukan pada sekuens nukleotida dari gen-gen kloroplas matK dan ndhF. Walaupun gen-gen ini dikenal sebagai untaian pengkode yang berevolusi dengan cepat, tetapi untuk taksa tumbuhan yang diamati pada penelitian ini menunjukkan variasi yang rendah. Pohon-pohon filogenetik hasil analisis gabungan dari sekuens nukleotida matK dan ndhF menunjukkan bahwa marga Litsea tidak monofiletik. Di antara empat seksi dari marga Litsea (seksi Tomingodaphne, seksi Litsea, seksi Conodaphne dan seksi Cylicodaphne, hanya seksi Litsea yang monofiletik.

  20. Effects of Pilates mat exercises on muscle strength and on pulmonary function in patients with cystic fibrosis*

    OpenAIRE

    Caroline Buarque Franco; Antonio Fernando Ribeiro; André Moreno Morcillo; Mariana Porto Zambon; Marina Buarque Almeida; Tatiana Rozov

    2014-01-01

    OBJECTIVE: To analyze the effects of Pilates mat exercises in patients with cystic fibrosis (CF). METHODS: This was a clinical trial involving 19 CF patients recruited from either the CF Outpatient Clinic of the State University at Campinas Hospital de Clínicas or the Children's Institute of the University of São Paulo School of Medicine Hospital das Clínicas. All of the patients performed Pilates mat exercises for four months (one 60-min session per week). The variables studied (before and a...

  1. Types of the Fiber Glass-Mat on Fatigue Characteristic of Composite Materials at Constant Fiber Volume Fraction: Experimental Determination

    OpenAIRE

    . Hussain. J. Al-Alkawi; Dhafir S. Al-Fattal; Abdul-Jabar H. Ali

    2012-01-01

    The aim of this work is to study the influence of the type of fiber glass mat on fatigue behavior of composite material which is manufactured from polyester and E-glass (woven roving, chopped strand mat (CSM)) as a laminate with a constant fiber volume fraction (VF) of 33%. The results showed that the laminates reinforced with E-glass (woven roving) [0/90, ±45.0/90] and [0/90, CSM, 0/90] have lower fatigue strength than the laminates reinforced with E-glass [0/90]3,[CSM]3 and [CSM, 0/90, CSM]...

  2. Debromoaplysiatoxin in Lyngbya-dominated mats on manatees (Trichechus manatus latirostris) in the Florida King's Bay ecosystem.

    Science.gov (United States)

    Harr, Kendal E; Szabo, Nancy J; Cichra, Mary; Phlips, Edward J

    2008-08-01

    Proliferation of the potentially toxic cyanobacterium, Lyngbya, in Florida lakes and rivers has raised concerns about ecosystem and human health. Debromoaplysiatoxin (DAT) was measured in concentrations up to 6.31 microg/g wet weight lyngbyatoxin A equivalents (WWLAE) in Lyngbya-dominated mats collected from natural substrates. DAT was also detected (up to 1.19 microg/g WWLAE) in Lyngbya-dominated mats collected from manatee dorsa. Ulcerative dermatitis found on manatees is associated with, but has not been proven to be caused by DAT. PMID:18585400

  3. Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain

    DEFF Research Database (Denmark)

    Polerecky, Lubos; Bachar, Ami; Schoon, Raphaela; Grinstein, Mor; Jørgensen, Bo Barker; de Beer, Dirk; Jonkers, Henk M.

    2007-01-01

    In dense stratified systems such as microbial mats, photosynthesis and respiration are coupled due to a tight spatial overlap between oxygen-producing and -consuming microorganisms. We combined microsensors and a membrane inlet mass spectrometer with two independent light sources emitting in the...... visible (VIS) and near infrared (NIR) regions to study this coupling in more detail. Using this novel approach, we separately quantified the activity of the major players in the oxygen cycle in a hypersaline microbial mat: gross photosynthesis of cyanobacteria, NIR light-dependent respiration of......-dependent behaviour of CLB and other anoxygenic phototrophic groups....

  4. Improve Data Mining and Knowledge Discovery through the use of MatLab

    Science.gov (United States)

    Shaykahian, Gholan Ali; Martin, Dawn Elliott; Beil, Robert

    2011-01-01

    Data mining is widely used to mine business, engineering, and scientific data. Data mining uses pattern based queries, searches, or other analyses of one or more electronic databases/datasets in order to discover or locate a predictive pattern or anomaly indicative of system failure, criminal or terrorist activity, etc. There are various algorithms, techniques and methods used to mine data; including neural networks, genetic algorithms, decision trees, nearest neighbor method, rule induction association analysis, slice and dice, segmentation, and clustering. These algorithms, techniques and methods used to detect patterns in a dataset, have been used in the development of numerous open source and commercially available products and technology for data mining. Data mining is best realized when latent information in a large quantity of data stored is discovered. No one technique solves all data mining problems; challenges are to select algorithms or methods appropriate to strengthen data/text mining and trending within given datasets. In recent years, throughout industry, academia and government agencies, thousands of data systems have been designed and tailored to serve specific engineering and business needs. Many of these systems use databases with relational algebra and structured query language to categorize and retrieve data. In these systems, data analyses are limited and require prior explicit knowledge of metadata and database relations; lacking exploratory data mining and discoveries of latent information. This presentation introduces MatLab(TradeMark)(MATrix LABoratory), an engineering and scientific data analyses tool to perform data mining. MatLab was originally intended to perform purely numerical calculations (a glorified calculator). Now, in addition to having hundreds of mathematical functions, it is a programming language with hundreds built in standard functions and numerous available toolboxes. MatLab's ease of data processing, visualization and

  5. Dehydration improves cryopreservation of mat rush (Juncus decipiens Nakai) basal stem buds on cryo-plates.

    Science.gov (United States)

    Niino, T; Yamamoto, S I; Fukui, K; Castillo Martinez, C R; Arizaga, M V; Matsumoto, T; Engelmann, F

    2013-01-01

    Two cryopreservation procedures using aluminium cryo-plates, termed V-Cryo-plate and D-Cryo-plate, were successfully developed for in vitro mat rush (Juncus decipiens Nakai) basal stem buds. Multiple stems induced in liquid MS medium containing 8.9 μM BA by roller culture were cut into small clumps, plated on solid MS medium and cultured for 1 week at 25 degree C. Clumps that had produced many buds were cold-hardened at 5 degree C for 1-2 months. The buds with basal stems were dissected from small clumps and precultured overnight at 25 degree C on solid MS medium containing 0.3 M sucrose. Precultured buds were placed on aluminium cryo-plates and embedded in calcium alginate gel. Osmoprotection was performed by immersing the cryo-plates for 30 min at 25 degree C in loading solution (2 M glycerol + 1.0 M sucrose). In the D-Cryo-plate procedure, the buds were dehydrated to 27-25% moisture content (fresh weight) by placing the cryo-plates in the air current of a laminar flow cabinet for 2 to 3 h. In the V-Cryo-plate procedure, buds were dehydrated by immersing the cryo-plates in PVS2 vitrification solution for 40 min at 25 degree C. In both procedures, cooling was performed by placing the cryo-plates in uncapped cryotubes, which were immersed in liquid nitrogen. For rewarming, cryo-plates were immersed in medium with 1.0 M sucrose for 20 min at room temperature. Regrowth of cryopreserved buds of line 'Kitakei 2' using D-Cryo-plate and V-Cryo-plate procedures, was 90% and 80%, respectively. The two procedures were applied to 20 additional mat rush lines. Using the V-Cryo-plate procedure resulted in regrowth ranging between 13.3 and 86.7%, with an average of 52.5%. The D-Cryo-plate led to regrowth ranging between 73.3 and 96.7%, with an average of 86.3%. The D-Cryo-plate procedure will facilitate cryostorage of mat rush germplasm. PMID:24441366

  6. Presença de matérias estranhas em erva-doce, Pimpinella anisum L. | Presence of foreign matter in anise, Pimpinella anisum L.

    Directory of Open Access Journals (Sweden)

    Juliana Machado Santos

    2015-11-01

    Full Text Available A palavra “chá” é usada popularmente no Brasil como sinônimo de infusão de frutos, folhas, raízes ou ervas como camomila, hortelã, erva-doce, capim-cidreira. A Resolução da Diretoria Colegiada RDC nº 277/2005 define “chá” como “o produto constituído de uma ou mais partes de espécie(s vegetal(is inteira(s, fragmentada(s ou moída(s, com ou sem fermentação, tostada(s ou não”. O produto deve ser designado como “chá”, seguido do nome comum da espécie vegetal utilizada. O Codex Alimentarius considera crianças e idosos grupos de risco quanto à presença de matérias estranhas em alimentos. O presente estudo teve como objetivo avaliar a qualidade, através da pesquisa de matérias estranhas, de dez marcas de “chás” da espécie vegetal Pimpinella anisum L. oferecidas no mercado varejista do Rio de Janeiro. Foram utilizadas as metodologias para alimentos da Association of Official Analytical Chemists de 2010 e para droga vegetal da Farmacopeia Brasileira de 2010. Das onze marcas, seis apresentaram presença de matérias estranhas acima de 2%, conforme estabelecido na Farmacopeia Brasileira. Em todas as amostras foram detectadas a presença de terra e areia indicativas de falhas das Boas Práticas pelas legislações específicas. =============================================== The word “tea” is popularly used in Brazil as a synonym for the infusion of fruits, leaves, roots, or herbs, such as chamomile, mint, fennel, and lemongrass. The Collegiate Board Resolution (RDC No. 277/2005 defines “tea” as a product consisting of one or more parts of plant species, whole, fragmented, or ground, with or without fermentation, and toasted or untoasted. The product must be designated as “tea,” followed by the common name of the plant species used. The Codex Alimentarius defines children and the elderly as risk groups for the presence of foreign matter in food. This study aims to evaluate the quality of tea offered

  7. Mobile Assessment and Treatment for Schizophrenia (MATS): A Pilot Trial of An Interactive Text-Messaging Intervention for Medication Adherence, Socialization, and Auditory Hallucinations

    OpenAIRE

    Granholm, Eric; Ben-Zeev, Dror; Link, Peter C.; Bradshaw, Kristen R.; Holden, Jason L.

    2011-01-01

    Mobile Assessment and Treatment for Schizophrenia (MATS) employs ambulatory monitoring methods and cognitive behavioral therapy interventions to assess and improve outcomes in consumers with schizophrenia through mobile phone text messaging. Three MATS interventions were developed to target medication adherence, socialization, and auditory hallucinations. Participants received up to 840 text messages over a 12-week intervention period. Fifty-five consumers with schizophrenia or schizoaffectiv...

  8. High rates of sulfate reduction in a low-sulfate hot spring microbial mat are driven by a low level of diversity of sulfate-respiring microorganisms

    DEFF Research Database (Denmark)

    Dillon, Jesse G; Fishbain, Susan; Miller, Scott R;

    2007-01-01

    The importance of sulfate respiration in the microbial mat found in the low-sulfate thermal outflow of Mushroom Spring in Yellowstone National Park was evaluated using a combination of molecular, microelectrode, and radiotracer studies. Despite very low sulfate concentrations, this mat community...

  9. Microbial Mats in the Tswaing Impact Crater: Results of a South African Exobiology Expedition and Implications for the Search for Biological Molecules on Mars

    Science.gov (United States)

    Cockell, C. S.; Brandt, D.; Hand, K.; Lee, P. C.

    2001-01-01

    We describe microbial mats from the Tswaing impact crater in South Africa. The mats provide insights into the unique biological characteristics of impact craters and can help strategies for the search for biomolecules on Mars. Additional information is contained in the original extended abstract.

  10. Diversity of Mat-Forming Fungi in Relation to Soil Properties, Disturbance, and Forest Ecotype at Crater Lake National Park, Oregon, USA

    Directory of Open Access Journals (Sweden)

    James M. Trappe

    2012-04-01

    Full Text Available In forest ecosystems, fungal mats are functionally important in nutrient and water uptake in litter and wood decomposition processes, in carbon resource allocation, soil weathering and in cycling of soil resources. Fungal mats can occur abundantly in forests and are widely distributed globally. We sampled ponderosa pine/white fir and mountain hemlock/noble fir communities at Crater Lake National Park for mat-forming soil fungi. Fungus collections were identified by DNA sequencing. Thirty-eight mat-forming genotypes were identified; members of the five most common genera (Gautieria, Lepiota, Piloderma, Ramaria, and Rhizopogon comprised 67% of all collections. The mycorrhizal genera Alpova and Lactarius are newly identified as ectomycorrhizal mat-forming taxa, as are the saprotrophic genera Flavoscypha, Gastropila, Lepiota and Xenasmatella. Twelve typical mat forms are illustrated, representing both ectomycorrhizal and saprotrophic fungi that were found. Abundance of fungal mats was correlated with higher soil carbon to nitrogen ratios, fine woody debris and needle litter mass in both forest ecotypes. Definitions of fungal mats are discussed, along with some of the challenges in defining what comprises a fungal “mat”.

  11. White Sturgeon Egg-Mat Network near Shorty's Island and Myrtle Bend, 2007-2013, Koootenai River near Bonners Ferry, ID

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The egg-mat data describe a sub-set of the egg-mat network operated by the Idaho Department of Fish and Game. The sub-set inlcudes two sites, 1. near an area...

  12. The Final Beam Line Design for the HiRadMat Test Facility

    CERN Document Server

    Hessler, C; Meddahi, M

    2010-01-01

    The High Radiation to Materials facility - hereafter HiRadMat - is designed to allow testing of accelerator components, in particular those of the LHC and its injectors, with the impact of high-intensity pulsed beams. The facility is currently under construction, as an approved CERN project. The installation of the dedicated primary beam line and experimental area is planned during the 2010-2011 technical stop. It will be ready for users after commissioning and some test running in October 2011. A detailed proton beam line design has been performed in order to fulfil the beam parameter specification, in particular the demanding optics flexibility at the test stand location. The studies presented include trajectory correction and aperture studies as well as specifications of magnetic systems, power converters, beam instrumentation and vacuum systems

  13. Matériaux hybrides organiques à base de graphène

    OpenAIRE

    Schlierf, Andrea

    2014-01-01

    En 2004, le carbone, la base de toute vie connue sur Terre, a marqué les esprits une fois de plus: Les scientifiques de l’Université de Manchester au Royaume Uni ont pu extraire une matière carbonée complètement nouvelle, le graphène à partir d’un morceau de graphite comme celui qui compose les crayons. À l’aide d’un ruban adhésif, ils ont obtenu une paillette de carbone de l’épaisseur d’un atome seulement, à une époque où beaucoup pensaient qu’un matériaux cristallin aussi fin ne pouvait pas...

  14. Att uppleva mat med alla sinnen : - Lärares erfarenheter av Sapere-metoden

    OpenAIRE

    Dahlström, Lina

    2009-01-01

    Studier visar att åtgärder krävs för att minska svenska barns intag av sötsaker och fett samt öka intaget av frukt och grönsaker. Skolors roll i att främja en hälsosammare kosthållning hos barn måste därför få en ökad uppmärksamhet. Lärare bör ta tillvara på tillfällen som ges att i undervisningen förmedla en positiv syn på mat. Sapere-metoden är en pedagogisk metod som syftar till att öva upp elevers sensoriska förmåga, utveckla deras språk samt på sikt förbättra deras matvanor. Denna metod ...

  15. First Results of an Experiment on Advanced Collimator Materials at CERN HiRadMat Facility

    CERN Document Server

    Bertarelli, A; Assmann, R; Berthome, E; Boccone, V; Carra, F; Cerutti, F; Charrondiere, C; Dallocchio, A; Donze, M; Francon, P; Garlasche, M; Gentini, L; Guinchard, M; Mariani, N; Masi, A; Moyret, P; Redaelli, S; Rossi, A; Calderon Cueva, M; Charitonidis, N; Peroni, L; Scapin, M

    2013-01-01

    A comprehensive, first-of-its-kind experiment (HRMT-14) has been recently carried out at CERN HiRadMat facility on six different materials of interest for Beam Intercepting Devices (collimators, targets, dumps). Both traditional materials (Mo, W and Cu alloys) as well as advanced metal/diamond and metal/graphite composites were tested under extreme conditions as to pressure, density and temperature, leading to the development of highly dynamic phenomena as shock-waves, spallation, explosions. Experimental data were acquired, mostly in real time, relying on extensive integrated instrumentation (strain gauges, temperature and vacuum sensors) and on remote acquisition devices (laser Doppler vibrometer and high-speed camera). The experiment was a success under all points of view in spite of the technological challenges and harsh environment. First measurements are in good agreement with results of complex simulations, confirming the effectiveness of the acquisition system and the reliability of advanced numerical...

  16. BWR-plant simulator and its neural network companion with programming under mat lab environment

    International Nuclear Information System (INIS)

    Stand alone nuclear power plant simulators, as well as building blocks based nuclear power simulator are available from different companies throughout the world. In this work, a review of such simulators has been explored for both types. Also a survey of the possible authoring tools for such simulators development has been performed. It is decided, in this research, to develop prototype simulator based on components building blocks. Further more, the authoring tool (Mat lab software) has been selected for programming. It has all the basic tools required for the simulator development similar to that developed by specialized companies for simulator like MMS, APROS and others. Components simulations, as well as integrated components for power plant simulation have been demonstrated. Preliminary neural network reactor model as part of a prepared neural network modules library has been used to demonstrate module order shuffling during simulation. The developed components library can be refined and extended for further development. (author)

  17. Some Aspects of the Deformation Response of Swirl-Mat Composites

    Energy Technology Data Exchange (ETDEWEB)

    Elahi, M.; Weitsman, Y.J.

    1999-10-01

    This report concerns the mechanical response of random glass fiber strand swirl-mat/urethane matrix composite under static and cyclic loads as well as under elevated temperatures and exposure to distilled water. The article presents an extensive amount of experimental data as well as predictions based on a couple damage/viscoelastic constitutive formulation generated to model the specific behavior of the material at hand. Damage evolution relations are derived from an empirical relationship. This work extends previously published results. It is shown that the current model has the capability to predict long-term response on the basis of short-term data and account for time-varying stresses and temperatures.

  18. 125I disk source using charcoal activated polyurethane foam rubber mat

    International Nuclear Information System (INIS)

    Uniform 125I disk sources were prepared as a reference source to calibrate NaI(Tl) scintillation detector to measure 125I activity on a filter of air monitor in a laboratory. The base of the disk source was a charcoal activated polyurethane foam rubber mat of 75 mm in diameter, 2 mm in thickness. 125I disk sources of approximate 0.5 kBq, 1 kBq, and 10 kBq were obtained through immersing disks in ethanol solution containing Na125I of 0.5 kBq/ml, 1 kBq/ml and 10 kBq/ml, respectively, and then drying up them. The uniformity of the distribution of 125I on the disk source was estimated by analyzing the autoradiograph of the disk source using an imaging analyzer. The radioactivity of 125I was distributed uniformly on the surface of the disk source within an uncertainty of about 10%. (author)

  19. Lecture matérialiste des Méditations cartésiennes

    Directory of Open Access Journals (Sweden)

    Anne Staquet

    2009-08-01

    Full Text Available Lorsque, à de rares occasions, on envisage le caractère matérialiste de la pensée cartésienne, c'est systématiquement en s'appuyant sur ses textes scientifiques. Les textes plus philosophiques sont dans cette perspective laissés de côté, voire déconsidérés comme le montre de manière exacerbée  Hiram Caton, qui discrédite les Méditations sous prétexte qu'elle ne seraient écrites que pour endormir la censure et acheter une réputation à leur auteur et n'ont donc aucune pertinence philosophique. Or, Descartes n'a cessé d'insister sur l'importance de relier ses deux types écrits : les plus scientifiques et les plus métaphysiques. C'est la raison pour laquelle, à l'inverse de ces considérations, je propose de tenter une lecture matérialiste (au sens leibnizien du terme des Méditations métaphysiques. Pour ce faire, m'appuyant sur les paroles mêmes de Descartes, je commencerai par montrer l'usage que fait le philosophe de la dissimulation dans l'ensemble de ses œuvres. Je montrerai ensuite comment le dualisme cartésien permet de fonder un matérialisme. Et je terminerai en montrant comment les preuves de l'existence de Dieu et la distinction âme-corps ne contredisent en fait pas réellement une lecture matérialiste des Méditations cartésiennes.Materialistic interpretation of the Cartesian MéditationsWhen, on rare occasions, we consider the materialistic nature of the Cartesian thinking, we systematically refer to scientific texts. In this perspective, more philosophical texts are not taken into consideration or are even ignored, as Hiram Caton showed it by discrediting the Méditations because they would only have been written to dupe the censure and buy a reputation for their author. They would therefore have no philosphical pertinence at all. But Descartes never stopped to insist on the importance of combining both writing types: the scientific one and the metaphysical one. For that reason, contrary to these

  20. Examination of Beryllium Under Intense High Energy Proton Beam at CERN's HiRadMat Facility

    CERN Document Server

    Ammigan, K; Hurh, P; Zwaska, R; Atherton, A; Caretta, O; Davenne, t; Densham, C; Fitton, M; Loveridge, P; O'Dell, J; Roberts, S; Kuksenko, v; Butcher, M; Calviani, M; Guinchard, M; Losito, R

    2015-01-01

    Beryllium is extensively used in various accelerator beam lines and target facilities as material for beam win- dows, and to a lesser extent, as secondary particle produc- tion targets. With increasing beam intensities of future ac- celerator facilities, it is critical to understand the response of beryllium under extreme conditions to avoid compro- mising particle production efficiency by limiting beam pa- rameters. As a result, the planned experiment at CERN’s HiRadMat facility will take advantage of the test facility’s tunable high intensity proton beam to probe and investigate the damage mechanisms of several grades of beryllium. The test matrix will consist of multiple arrays of thin discs of varying thicknesses as well as cylinders, each exposed to increasing beam intensities. Online instrumentations will acquire real time temperature, strain, and vibration data of the cylinders, while Post-Irradiation-Examination (PIE) of the discs will exploit advanced microstructural characteri- zation and imagin...