WorldWideScience

Sample records for beam based alignment

  1. Semiautomatic beam-based LHC collimator alignment

    CERN Document Server

    Valentino, Gianluca; Bruce, Roderik; Wollmann, Daniel; Sammut, Nicholas; Rossi, Adriana; Redaelli, Stefano

    2012-01-01

    Full beam-based alignment of the LHC collimation system was a time-consuming procedure (up to 28 hours) as the collimators were set up manually. A yearly alignment campaign has been sufficient for now, although in the future due to tighter tolerances this may lead to a decrease in the cleaning efficiency if machine parameters such as the beam orbit drift over time. Automating the collimator setup procedure can reduce the beam time for collimator setup and allow for more frequent alignments, therefore reducing the risk of performance degradation. This article describes the design and testing of a semiautomatic algorithm as a first step towards a fully automatic setup procedure. The parameters used to measure the accuracy and performance of the alignment are defined and determined from experimental data. A comparison of these measured parameters at 450 GeV and 3.5 TeV with manual and semiautomatic alignment is provided.

  2. Simulator for beam-based LHC collimator alignment

    Science.gov (United States)

    Valentino, Gianluca; Aßmann, Ralph; Redaelli, Stefano; Sammut, Nicholas

    2014-02-01

    In the CERN Large Hadron Collider, collimators need to be set up to form a multistage hierarchy to ensure efficient multiturn cleaning of halo particles. Automatic algorithms were introduced during the first run to reduce the beam time required for beam-based setup, improve the alignment accuracy, and reduce the risk of human errors. Simulating the alignment procedure would allow for off-line tests of alignment policies and algorithms. A simulator was developed based on a diffusion beam model to generate the characteristic beam loss signal spike and decay produced when a collimator jaw touches the beam, which is observed in a beam loss monitor (BLM). Empirical models derived from the available measurement data are used to simulate the steady-state beam loss and crosstalk between multiple BLMs. The simulator design is presented, together with simulation results and comparison to measurement data.

  3. Beam based alignment of the SSRF storage ring

    Institute of Scientific and Technical Information of China (English)

    ZHANG Man-Zhou; LI Hao-Hu; JIANG Bo-Cheng; LIU Gui-Min; LI De-Ming

    2009-01-01

    There are 140 beam position monitors (BPMs) in the Shanghai Synchrotron Radiation Facility (SSRF) storage ring used for measuring the closed orbit. As the BPM pickup electrodes are assembled directly on the vacuum chamber, it is important to calibrate the electrical center offset of the BPM to an adjacent quadrupole magnetic center. A beam based alignment (BBA) method which varies individual quadrupole magnet strength and observes its effects on the orbit is used to measure the BPM offsets in both the horizontal and vertical planes. It is a completely automated technique with various data processing methods. There are several parameters such as the strength change of the correctors and the quadrupoles which should be chosen carefully in real measurement. After several rounds of BBA measurement and closed orbit correction, these offsets are set to an accuracy better than 10 μm. In this paper we present the method of beam based calibration of BPMs, the experimental results of the SSRF storage ring, and the error analysis.

  4. Beam based alignment and its relevance in Indus-2

    Energy Technology Data Exchange (ETDEWEB)

    Jena, Saroj Kumar; Husain, Riyasat; Gandhi, M. L.; Agrawal, R. K.; Yadav, S.; Ghodke, A. D. [Raja Ramanna Centre for Advanced Technology, Indore (India)

    2015-09-15

    Initially in the Indus-2 storage ring, the closed orbit distortion (COD) could be best corrected to 1.3 mm rms in the horizontal and 0.43 mm rms in the vertical plane. The strength of the corrector magnets required high values for COD correction. This revealed that offsets in COD readout by the beam position monitors (BPMs) played a role in not achieving a rms COD lower than the above value. Thus, the offset between the electrical center of BPMs and the magnetic center of the nearest quadrupole magnet could be estimated using the beam based alignment (BBA) method. It prefers that the quadrupole magnet is able to be controlled individually and active shunt power supply (ASPS) system was designed for this purpose that works efficiently. This paper describes the methodology of BBA, topology of ASPS and its performance, and COD minimization using the measured BPM offsets. After BBA, the COD could be reduced to 0.45 mm rms and 0.2 mm rms in horizontal and vertical planes, respectively.

  5. Automation of beam based alignment for the PAL-XFEL undulator line

    Energy Technology Data Exchange (ETDEWEB)

    Parc, Yong Woon; Hwang, Ilmoon [Pohang Accelerator Laboratory, Pohang 790-784 (Korea, Republic of); Han, Jang-Hui, E-mail: janghui_han@postech.ac.kr [Pohang Accelerator Laboratory, Pohang 790-784 (Korea, Republic of); Ko, In Soo [Pohang University of Science and Technology, Pohang 790-784 (Korea, Republic of)

    2015-05-11

    An automated method of quadrupole beam based alignment in an X-ray free electron laser (XFEL) undulator line is proposed. To realize the automatic beam based alignment (BBA) independently of operator's skill and efforts, the procedure is simplified. Simulation results on the BBA technique using two alignment stages for the Pohang Accelerator Laboratory XFEL's (PAL-XFEL) undulator line is carried out. After a standard mechanical alignment the quadrupoles are expected to be aligned to 100 μm rms from our previous experience. A rough alignment method in this study is able to align the quadrupoles to about 40 μm rms without any pre-handling of electron beam orbit or quadrupoles position. At the second stage, the singular value decomposition (SVD) method is applied to perform a fine alignment in which the trajectory of an electron beam is controlled within 5 μm rms to the ideal orbit. All procedures are programmable to perform the BBA automatically.

  6. Comparison of LHC collimator beam-based alignment to BPM-Interpolated centers

    CERN Document Server

    Valentino, G; Assmann, R W; Bruce, R; Muller, G J; Redaelli, S; Rossi, A; Lari, L

    2012-01-01

    The beam centers at the Large Hadron Collider collimators are determined by beam-based alignment, where both jaws of a collimator are moved in separately until a loss spike is detected on a Beam LossMonitor downstream. Orbit drifts of more than a few hundred micrometers cannot be tolerated, as they would compromise the performance of the collimation system. Beam Position Monitors (BPMs) are installed at various locations around the LHC ring, and a linear interpolation of the orbit can be obtained at the collimator positions. In this paper, the results obtained from beam-based alignment are compared with the orbit interpolated from the BPM data throughout the 2011 and 2012 LHC proton runs.

  7. Implementation of Accelerated Beam-Specific Matched-Filter-Based Optical Alignment

    Energy Technology Data Exchange (ETDEWEB)

    Awwal, A S; Rice, K L; Taha, T M

    2009-01-29

    Accurate automated alignment of laser beams in the National Ignition Facility (NIF) is essential for achieving extreme temperature and pressure required for inertial confinement fusion. The alignment achieved by the integrated control systems relies on algorithms processing video images to determine the position of the laser beam images in real-time. Alignment images that exhibit wide variations in beam quality require a matched-filter algorithm for position detection. One challenge in designing a matched-filter based algorithm is to construct a filter template that is resilient to variations in imaging conditions while guaranteeing accurate position determination. A second challenge is to process the image as fast as possible. This paper describes the development of a new analytical template that captures key recurring features present in the beam image to accurately estimate the beam position under good image quality conditions. Depending on the features present in a particular beam, the analytical template allows us to create a highly tailored template containing only those selected features. The second objective is achieved by exploiting the parallelism inherent in the algorithm to accelerate processing using parallel hardware that provides significant performance improvement over conventional processors. In particular, a Xilinx Virtex II Pro FPGA hardware implementation processing 32 templates provided a speed increase of about 253 times over an optimized software implementation running on a 2.0 GHz AMD Opteron core.

  8. Beam-Based Alignment of the NuMI Target Station Components at FNAL

    Energy Technology Data Exchange (ETDEWEB)

    Zwaska, R.; /Argonne; Bishai, M.; Childress, S.; Drake, G.; Escobar, C.; Gouffon, P.; Harris, D.A.; Hylen, J.; Indurthy, D.; Koizumi, G.; Kopp, S.; /Argonne /Brookhaven

    2006-09-01

    The Neutrinos at the Main Injector (NuMI) facility is a conventional horn-focused neutrino beam which produces muon neutrinos from a beam of mesons directed into a long evacuated decay volume. The relative alignment of the primary proton beam, target, and focusing horns affects the neutrino energy spectrum delivered to experiments. This paper describes a check of the alignment of these components using the proton beam.

  9. Beam-based alignment at the KEK-ATF damping ring

    Energy Technology Data Exchange (ETDEWEB)

    Woodley, Mark D.; Nelson, Janice; Ross, Marc; Turner, James; Wolski, A.; Kubo, Kiyoshi

    2004-06-30

    The damping rings of a future linear collider will have demanding alignment and stability requirements in order to achieve the low vertical emittance necessary for high luminosity. The Accelerator Test Facility (ATF) at KEK has successfully demonstrated the vertical emittance below 5 pm that is specified for the GLC/NLC Main Damping Rings. One contribution to this accomplishment has been the use of Beam Based Alignment (BBA) techniques. The mode of operation of the ATF presents particular challenges for BBA, and we describe here how we have deduced the offsets of the BPMs with respect to the quadrupoles. We also discuss a technique that allows for direct measurements of the beam-to-quad offsets.

  10. Alignment tolerant expanded beam connector based on a gapless fiber-lens interface.

    Science.gov (United States)

    Lee, Yong-Geon; Park, Chang-Hyun; Back, Seon-Woo; Kim, Haeng-Jeong; Lee, Sang-Shin

    2016-01-10

    An expanded beam connector (EBC) has been proposed and realized, where a single-mode fiber is seamlessly integrated with a ball lens exhibiting a near-zero back focal length (BFL) so that the incoming small mode exiting the fiber translates into an enlarged collimated beam via the lens. The structural tolerance for the fiber-optic connector is primarily relaxed by relieving the restrictions imposed on the meticulous control of the gap between the lens and the fiber. The EBC has been designed through rigorous ray-optic simulations and then constructed based on a ball lens in LASF35 (n=∼1.98 at λ=1.3  μm), exhibiting an ultrashort BFL of ∼13  μm. It was practically confirmed that an input mode of a ∼10  μm spot relating to the single-mode fiber could be efficiently converted into a highly collimated beam of a ∼350  μm spot that emanates from the ball lens, leading to a 35-fold beam expansion. The alignment tolerance for the fiber as well as the connector unit was scrutinized with respect to the angular tilt and transverse displacement. The measured insertion loss for the EBC, allowing for no separation between the fiber and ball lens, was slightly over 0.8 dB.

  11. CLIC main beam quadrupole active pre-alignment based on cam movers

    CERN Document Server

    Kemppinen, J; Leuxe, R; Mainaud Durand, H; Sandomierski, J; Sosin, M

    2012-01-01

    Compact Linear Collider (CLIC) is a study for a future 48 km long linear electron-positron collider in the multi TeV range. Its target luminosity can only be reached if the main beam quadrupoles (MB quads) are actively pre-aligned within 17 µm in sliding windows of 200 m with respect to a straight reference line. In addition to the positioning requirement, the pre-alignment system has to provide a rigid support for the nano-stabilization system to ensure that the first eigenfrequency is above 100 Hz. Re-adjustment based on cam movers was chosen for detailed studies to meet the stringent pre-alignment requirements. There are four different types of MB quads in CLIC. Their lengths and masses vary so that at least two types of cam movers have to be developed. The validation of the cams with less stringent space restrictions has proceeded to a test setup in 5 degrees of freedom (DOF). Prototypes of the more demanding, smaller cams have been manufactured and they are under tests in 1 DOF. This paper describes the...

  12. A Fuzzy Logic Based Controller for the Automated Alignment of a Laser-beam-smoothing Spatial Filter

    Science.gov (United States)

    Krasowski, M. J.; Dickens, D. E.

    1992-01-01

    A fuzzy logic based controller for a laser-beam-smoothing spatial filter is described. It is demonstrated that a human operator's alignment actions can easily be described by a system of fuzzy rules of inference. The final configuration uses inexpensive, off-the-shelf hardware and allows for a compact, readily implemented embedded control system.

  13. Development of an Eccentric CAM Based Active Pre-Alignment System for the CLIC Main Beam Quadrupole Magnet

    CERN Document Server

    Lackner, F; Collette, C; Mainaud Durand, H; Hauviller, C; Kemppinen, J; Leuxe, R

    2010-01-01

    CLIC (Compact Linear Collider) is a study for a future electron-positron collider that would allow physicists to explore a new energy region beyond the capabilities of today's particle accelerators. The demanding transverse and vertical beam sizes and emittance specifications are resulting in stringent alignment and a nanometre stability requirement. In the current feasibility study, the main beam quadrupole magnets have to be actively pre-aligned with a precision of 1 µm in 5 degrees of freedom (d.o.f.) before being mechanically stabilized to the nm scale above 1 Hz. This contribution describes the approach of performing this active pre-alignment based on an eccentric cam system. In order to limit the amplification of the vibration sources at resonant frequencies a sufficiently high Eigenfrequency is required. Therefore the contact region between cam and support was optimized for adequate stiffness based on the Hertzian theory. Furthermore, practical tests performed on a single degree of freedom mock-up wil...

  14. Laser alignment measurement model with double beam

    Science.gov (United States)

    Mo, Changtao; Zhang, Lili; Hou, Xianglin; Wang, Ming; Lv, Jia; Du, Xin; He, Ping

    2012-10-01

    Double LD-Double PSD schedule.employ a symmetric structure and there are a laser and a PSD receiver on each axis. The Double LD-Double PSD is used, and the rectangular coordinate system is set up by use of the relationship of arbitrary two points coordinates, and then the parameter formula is deduced by the knowledge of solid geometry. Using the data acquisition system and the data processing model of laser alignment meter with double laser beam and two detector , basing on the installation parameter of the computer, we can have the state parameter between the two shafts by more complicated calculation and correction. The correcting data of the four under chassis of the adjusted apparatus moving on the level and the vertical plane can be calculated using the computer. This will instruct us to move the apparatus to align the shafts.

  15. Design and application of a laser beam alignment system based on the imaging properties of a multi-pass amplifier

    Institute of Scientific and Technical Information of China (English)

    Daizhong Liu; Fengnian Lü; Jinzhou Cao; Renfang Xu; Jianqiang Zhu; Dianyuan Fan; Jianbo Xiao; Xiaojun Zhou

    2006-01-01

    Image relaying is presented as a technique for aligning beams onto mm-sized target of high power laser. On the basis of summarizing the preceeding work on the near-field image relaying of multiple spatial filters,the far-filed image relaying is suggested firstly. The near-field and far-field image relaying properties of multiple spatial filters in laser beams automatic alignment system are analyzed. A geometrical optics approach and an ABCD ray matrix theory are used throughout. The reasonable and optimum scheme for automatically aligning multi-pass beam paths is presented and demonstrated on the multi-pass amplifier system of the SG-Ⅲ prototype.

  16. Fast Automatic Beam-Based Alignment of the LHC Collimator Jaws

    CERN Document Server

    Valentino, Gianluca; Assmann, R W

    2014-01-01

    The CERN Large Hadron Collider (LHC) in Geneva, Switzerland is the largest and most powerful particle accelerator ever built. With a circumference of 27 km, it is designed to collide particles in two counter-rotating beams at a centre-of-mass energy of 14 TeV to explore the fundamental forces and constituents of matter. Due to its potentially destructive high energy particle beams, the LHC is equipped with several machine protection systems. The LHC collimation system is tasked with scattering and absorbing beam halo particles before they can quench the superconducting magnets. The 108 collimators also protect the machine from damage in the event of very fast beam losses, and shields sensitive devices in the tunnel from radiation over years of operation. Each collimator is made up of two blocks or ‘jaws’ of carbon, tungsten or copper material. The collimator jaws need be placed symmetrically on either side of the beam trajectory, to clean halo particles with maximum efficiency. The beam orbit and beam siz...

  17. Reducing beam shaper alignment complexity: diagnostic techniques for alignment and tuning

    Science.gov (United States)

    Lizotte, Todd E.

    2011-10-01

    Safe and efficient optical alignment is a critical requirement for industrial laser systems used in a high volume manufacturing environment. Of specific interest is the development of techniques to align beam shaping optics within a beam line; having the ability to instantly verify by a qualitative means that each element is in its proper position as the beam shaper module is being aligned. There is a need to reduce these types of alignment techniques down to a level where even a newbie to optical alignment will be able to complete the task. Couple this alignment need with the fact that most laser system manufacturers ship their products worldwide and the introduction of a new set of variables including cultural and language barriers, makes this a top priority for manufacturers. Tools and methodologies for alignment of complex optical systems need to be able to cross these barriers to ensure the highest degree of up time and reduce the cost of maintenance on the production floor. Customers worldwide, who purchase production laser equipment, understand that the majority of costs to a manufacturing facility is spent on system maintenance and is typically the largest single controllable expenditure in a production plant. This desire to reduce costs is driving the trend these days towards predictive and proactive, not reactive maintenance of laser based optical beam delivery systems [10]. With proper diagnostic tools, laser system developers can develop proactive approaches to reduce system down time, safe guard operational performance and reduce premature or catastrophic optics failures. Obviously analytical data will provide quantifiable performance standards which are more precise than qualitative standards, but each have a role in determining overall optical system performance [10]. This paper will discuss the use of film and fluorescent mirror devices as diagnostic tools for beam shaper module alignment off line or in-situ. The paper will also provide an overview

  18. Group Based Interference Alignment

    CERN Document Server

    Ma, Yanjun; Chen, Rui; Yao, Junliang

    2010-01-01

    in $K$-user single-input single-output (SISO) frequency selective fading interference channels, it is shown that the achievable multiplexing gain is almost surely $K/2$ by using interference alignment (IA). However when the signaling dimensions is limited, allocating all the resource to all the users simultaneously is not optimal. According to this problem, a group based interference alignment (GIA) scheme is proposed and a search algorithm is designed to get the group patterns and the resource allocation among them. Analysis results show that our proposed scheme achieves a higher multiplexing gain when the resource is limited.

  19. Partial Alignment for Improvement of Beam Transmission at KOMAC

    Energy Technology Data Exchange (ETDEWEB)

    Seo, Dong-Hyuk; Kim, Dae-Il; Ahn, Tae-Sung; Kim, Han-Sung; Kwon, Hyeok-Jung; Cho, Yong-Sub [KOMAC, Gyeongju (Korea, Republic of)

    2015-05-15

    The ion source and steering magnets were aligned for improving the beam transmission. It is expected that the re-alignment of accelerator components can reduce the beam loss which can occur for the dislocation among them. The center displacements of RFQ and 20MeV DTL are different to 100MeV DTL, so it is necessary to re-align in next maintenance period. 100MeV proton linac placed in KOMAC (Korea Multi-purpose Accelerator Complex) has been operated and provided to beam users. There are two maintenance periods every year, winter (Jan-Feb) and summer (Jul-Aug). In maintenance period, proton linac is re-aligned for the improvement of beam transmission. 4 newly steering magnet are installed in beam line. To align the steering magnet, network align in tunnel is measured using by laser tracker. In addition, the position of ion source is away from the position of RFQ in the result of the survey of network align. The alignment of steering magnet after installation is performed. At the same time, the position of accelerator component is checked and aligned partially.

  20. Strategy for alignment of electron beam trajectory in LEReC cooling section

    Energy Technology Data Exchange (ETDEWEB)

    Seletskiy, S. [Brookhaven National Lab. (BNL), Upton, NY (United States); Blaskiewicz, M. [Brookhaven National Lab. (BNL), Upton, NY (United States); Fedotov, A. [Brookhaven National Lab. (BNL), Upton, NY (United States); Kayran, D. [Brookhaven National Lab. (BNL), Upton, NY (United States); Kewisch, J. [Brookhaven National Lab. (BNL), Upton, NY (United States); Michnoff, R. [Brookhaven National Lab. (BNL), Upton, NY (United States); Pinayev, I. [Brookhaven National Lab. (BNL), Upton, NY (United States)

    2016-09-23

    We considered the steps required to align the electron beam trajectory through the LEReC cooling section. We devised a detailed procedure for the beam-based alignment of the cooling section solenoids. We showed that it is critical to have an individual control of each CS solenoid current. Finally, we modeled the alignment procedure and showed that with two BPM fitting the solenoid shift can be measured with 40 um accuracy and the solenoid inclination can be measured with 30 urad accuracy. These accuracies are well within the tolerances of the cooling section solenoid alignment.

  1. Modification and alignment of beam line of 10 MeV RF electron beam accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Barnwal, R; Ghodke, S R; Bhattacharjee, D; Kumar, M; Jayaprakash, D; Chindarkar, A R; Mishra, R L; Kumar, M; P, Dixit K; S, Acharya; Barje, S R; Lawangare, N K; C, Saroj P; Nimje, V T; Chandan, S; Tillu, A R; V, Sharma; Chavan, R B [Accelerator and Pulse Power Division, BARC, Mumbai, India-400085 (India); Dolas, S [Centre for Design and Manufacturing, BARC, Mumbai, India-400085 (India); Kulkarni, S Y [SAMEER, IIT Powai campus, Mumbai, India-400076 (India)], E-mail: rajesh_barc47@indiatimes.com (and others)

    2008-05-01

    A 10 MeV, 10 kW RF industrial Electron linac designed and developed at BARC is installed at the Electron Beam Center Kharghar, Navi Mumbai. The entire RF accelerator assembly consists of Electron gun, RF source, RF linac structure, Beam diagnostic chamber, Drift tube, Scanning magnet, Beam sensing aperture, Scan horn, and is spread over two floors at EBC. The paper discusses in detail about the alignment procedure adopted for the equipments of 10 MeV RF beamline. The complete electron beamline will be maintained under ultra high vacuum of the order of 10-7 torr. The paper discusses about the present problem of alignment, measurement technique of alignment, reason for misalignment, possible ways to solve the problem, equipment used for alignment, supports and arrestors, verification of alignment under vacuum.

  2. Modification & alignment of beam line of 10 MeV RF electron beam accelerator

    Science.gov (United States)

    Barnwal, R.; Ghodke, S. R.; Bhattacharjee, D.; Kumar, M.; Jayaprakash, D.; Chindarkar, A. R.; Mishra, R. L.; Dolas, S.; Kulkarni, S. Y.; Kumar, M.; P, Dixit K.; S, Acharya; Barje, S. R.; Lawangare, N. K.; C, Saroj P.; Nimje, V. T.; Chandan, S.; Tillu, A. R.; V, Sharma; Chavan, R. B.; V, Yadav; P, Roychowdhury; Mittal, K. C.; Chakravarthy, D. P.; Ray, A. K.

    2008-05-01

    A 10 MeV, 10 kW RF industrial Electron linac designed and developed at BARC is installed at the Electron Beam Center Kharghar, Navi Mumbai. The entire RF accelerator assembly consists of Electron gun, RF source, RF linac structure, Beam diagnostic chamber, Drift tube, Scanning magnet, Beam sensing aperture, Scan horn, and is spread over two floors at EBC. The paper discusses in detail about the alignment procedure adopted for the equipments of 10 MeV RF beamline. The complete electron beamline will be maintained under ultra high vacuum of the order of 10-7 torr. The paper discusses about the present problem of alignment, measurement technique of alignment, reason for misalignment, possible ways to solve the problem, equipment used for alignment, supports & arrestors, verification of alignment under vacuum

  3. Understanding Beam Alignment in a Coherent Lidar System

    Science.gov (United States)

    Prasad, Narasimha S.; Roychoudhari, Chandrasekhar

    2015-01-01

    Optical beam alignment in a coherent lidar (or ladar) receiver system plays a critical role in optimizing its performance. Optical alignment in a coherent lidar system dictates the wavefront curvature (phase front) and Poynting vector) matching of the local oscillator beam with the incoming receiver beam on a detector. However, this alignment is often not easy to achieve and is rarely perfect. Furthermore, optical fibers are being increasingly used in coherent lidar system receivers for transporting radiation to achieve architectural elegance. Single mode fibers also require stringent mode matching for efficient light coupling. The detector response characteristics vary with the misalignment of the two pointing vectors. Misalignment can lead to increase in DC current. Also, a lens in front of the detector may exasperate phase front and Poynting vector mismatch. Non-Interaction of Waves, or the NIW property indicates the light beams do not interfere by themselves in the absence of detecting dipoles. In this paper, we will analyze the extent of misalignment on the detector specifications using pointing vectors of mixing beams in light of the NIW property.

  4. Adjustment procedure for beam alignment in scanned ion-beam therapy

    Science.gov (United States)

    Saraya, Y.; Takeshita, E.; Furukawa, T.; Hara, Y.; Mizushima, K.; Saotome, N.; Tansho, R.; Shirai, T.; Noda, K.

    2016-09-01

    Control of the beam position for three-dimensional pencil-beam scanning is important because the position accuracy of the beam significantly impacts the alignment of the irradiation field. To suppress this effect, we have developed a simple procedure for beamline tuning. At first, beamline tuning is performed with steering magnets and fluorescent screen monitors to converge the beam's trajectory to a central orbit. Misalignment between the beam's position and the reference axis is checked by using the verification system, which consists of a screen monitor and an acrylic phantom. If the beam position deviates from the reference axis, two pairs of steering magnets, which are placed on downstream of the beam transport line, will be corrected. These adjustments are iterated until the deviations for eleven energies of the beam are within 0.5 mm of the reference axis. To demonstrate the success of our procedure, we used our procedure to perform beam commissioning at the Kanagawa Cancer Center.

  5. Development and Beam Tests of an Automatic Algorithm for Alignment of LHC Collimators with Embedded BPMs

    CERN Document Server

    Valentino, G; Gasior, M; Mirarchi, D; Nosych, A A; Redaelli, S; Salvachua, B; Assmann, R W; Sammut, N

    2013-01-01

    Collimators with embedded Beam Position Monitor (BPM) buttons will be installed in the LHC during the upcoming long shutdown period. During the subsequent operation, the BPMs will allow the collimator jaws to be kept centered around the beam trajectory. In this manner, the best possible beam cleaning efficiency and machine protection can be provided at unprecedented higher beam energies and intensities. A collimator alignment algorithm is proposed to center the jaws automatically around the beam. The algorithm is based on successive approximation, as the BPM measurements are affected by non-linearities, which vary with the distance between opposite buttons, as well as the difference between the beam and the jaw centers. The successful test results, as well as some considerations for eventual operation in the LHC are also presented.

  6. isoSTED nanoscopy with intrinsic beam alignment.

    Science.gov (United States)

    Curdt, Franziska; Herr, Simon J; Lutz, Tobias; Schmidt, Roman; Engelhardt, Johann; Sahl, Steffen J; Hell, Stefan W

    2015-11-30

    Despite the need for isotropic optical resolution in a growing number of applications, the majority of super-resolution fluorescence microscopy setups still do not attain an axial resolution comparable to that in the lateral dimensions. Three-dimensional (3D) nanoscopy implementations that employ only a single objective lens typically feature a trade-off between axial and lateral resolution. 4Pi arrangements, in which the sample is illuminated coherently through two opposing lenses, have proven their potential for rendering the resolution isotropic. However, instrument complexity due to a large number of alignment parameters has so far thwarted the dissemination of this approach. Here, we present a 4Pi-STED setup combination, also called isoSTED nanoscope, where the STED and excitation beams are intrinsically co-aligned. A highly robust and convenient 4Pi cavity allows easy handling without the need for readjustments during imaging experiments.

  7. Motorized Beam Alignment of a Commercial X-ray Diffractometer

    Science.gov (United States)

    Van Zandt, Noah R.; Myers, James F.; Rogers, Richard B

    2013-01-01

    X-ray diffraction (XRD) is a powerful analysis method that allows researchers to noninvasively probe the crystalline structure of a material. This includes the ability to determine the crystalline phases present, quantify surface residual stresses, and measure the distribution of crystallographic orientations. The Structures and Materials Division at the NASA Glenn Research Center (GRC) heavily uses the on-site XRD lab to characterize advanced metal alloys, ceramics, and polymers. One of the x-ray diffractometers in the XRD lab (Bruker D8 Discover) uses three different x-ray tubes (Cu, Cr, and Mn) for optimal performance over numerous material types and various experimental techniques. This requires that the tubes be switched out and aligned between experiments. This alignment maximizes the x-ray tube s output through an iterative process involving four set screws. However, the output of the x-ray tube cannot be monitored during the adjustment process due to standard radiation safety engineering controls that prevent exposure to the x-ray beam when the diffractometer doors are open. Therefore, the adjustment process is a very tedious series of blind adjustments, each followed by measurement of the output beam using a PIN diode after the enclosure doors are shut. This process can take up to 4 hr to perform. This technical memorandum documents an in-house project to motorize this alignment process. Unlike a human, motors are not harmed by x-ray radiation of the energy range used in this instrument. Therefore, using motors to adjust the set screws will allow the researcher to monitor the x-ray tube s output while making interactive adjustments from outside the diffractometer. The motorized alignment system consists of four motors, a motor controller, and a hand-held user interface module. Our goal was to reduce the alignment time to less than 30 min. The time available was the 10-week span of the Lewis' Educational and Research Collaborative Internship Project (LERCIP

  8. Comparative genomics beyond sequence-based alignments

    DEFF Research Database (Denmark)

    Þórarinsson, Elfar; Yao, Zizhen; Wiklund, Eric D.;

    2008-01-01

    Recent computational scans for non-coding RNAs (ncRNAs) in multiple organisms have relied on existing multiple sequence alignments. However, as sequence similarity drops, a key signal of RNA structure--frequent compensating base changes--is increasingly likely to cause sequence-based alignment me...

  9. Propagation of partially polarized Gaussian Schell-model beams through aligned and misaligned optical systems

    Institute of Scientific and Technical Information of China (English)

    戈迪; 蔡阳健; 林强

    2005-01-01

    By use of a tensor method, the transform formulae for the beam coherence-polarization matrix of the partially polarized Gaussian Schell-model (GSM) beams through aligned and misaligned optical systems are derived. As an example, the propagation properties of the partially polarized GSM beam passing through a misaligned thin lens are illustrated numerically and discussed in detail. The derived formulae provide a convenient way to study the propagation properties of the partially polarized GSM beams through aligned and misaligned optical systems.

  10. Results from Tests of the Muon Endcap Alignment System in the H8 Beam Line 2002

    CERN Document Server

    Amelung, C; Cerutti, F; Handrich, K; Hashemi, K S; Mair, K; Palestini, S; Rothberg, J E; Schricker, A; Trigger, I

    2003-01-01

    The ATLAS muon spectrometer endcap test setup assembled in the H8 beam line at CERN in 2002 consisted of six alignment bars and six MDT chambers, representing part of one octant of the endcap. These elements were equipped with a full set of alignment sensors, which were used to obtain a first appraisal of the performance of the alignment system.

  11. Modeling and simulation of LHC beam-based collimator setup

    CERN Document Server

    Valentino, G; Assmann, R W; Burkart, F; Redaelli, S; Rossi, A; Lari, L

    2012-01-01

    In the 2011 Large Hadron Collider run, collimators were aligned for proton and heavy ion beams using a semiautomatic setup algorithm. The algorithm provided a reduction in the beam time required for setup, an elimination of beam dumps during setup and better reproducibility with respect to manual alignment. A collimator setup simulator was developed based on a Gaussian model of the beam distribution as well as a parametric model of the beam losses. A time-varying beam loss signal can be simulated for a given collimator movement into the beam. The simulation results and comparison to measurement data obtained during collimator setups and dedicated fills for beam halo scraping are presented. The simulator will then be used to develop a fully automatic collimator alignment algorithm.

  12. In vivo pink-beam imaging and fast alignment procedure for rat brain tumor radiation therapy.

    Science.gov (United States)

    Nemoz, Christian; Kibleur, Astrid; Hyacinthe, Jean Noël; Berruyer, Gilles; Brochard, Thierry; Bräuer-Krisch, Elke; Le Duc, Géraldine; Brun, Emmanuel; Elleaume, Hélène; Serduc, Raphaël

    2016-01-01

    A fast positioning method for brain tumor microbeam irradiations for preclinical studies at third-generation X-ray sources is described. The three-dimensional alignment of the animals relative to the X-ray beam was based on the X-ray tomography multi-slices after iodine infusion. This method used pink-beam imaging produced by the ID17 wiggler. A graphical user interface has been developed in order to define the irradiation parameters: field width, height, number of angles and X-ray dose. This study is the first reporting an image guided method for soft tissue synchrotron radiotherapy. It allowed microbeam radiation therapy irradiation fields to be reduced by a factor of ∼20 compared with previous studies. It permitted more targeted, more efficient brain tumor microbeam treatments and reduces normal brain toxicity of the radiation treatment.

  13. Alignment of the CMS Muon System with Cosmic-Ray and Beam-Halo Muons

    CERN Document Server

    Chatrchyan, S; Sirunyan, A M; Adam, W; Arnold, B; Bergauer, H; Bergauer, T; Dragicevic, M; Eichberger, M; Erö, J; Friedl, M; Frühwirth, R; Ghete, V M; Hammer, J; Hänsel, S; Hoch, M; Hörmann, N; Hrubec, J; Jeitler, M; Kasieczka, G; Kastner, K; Krammer, M; Liko, D; Magrans de Abril, I; Mikulec, I; Mittermayr, F; Neuherz, B; Oberegger, M; Padrta, M; Pernicka, M; Rohringer, H; Schmid, S; Schöfbeck, R; Schreiner, T; Stark, R; Steininger, H; Strauss, J; Taurok, A; Teischinger, F; Themel, T; Uhl, D; Wagner, P; Waltenberger, W; Walzel, G; Widl, E; Wulz, C E; Chekhovsky, V; Dvornikov, O; Emeliantchik, I; Litomin, A; Makarenko, V; Marfin, I; Mossolov, V; Shumeiko, N; Solin, A; Stefanovitch, R; Suarez Gonzalez, J; Tikhonov, A; Fedorov, A; Karneyeu, A; Korzhik, M; Panov, V; Zuyeuski, R; Kuchinsky, P; Beaumont, W; Benucci, L; Cardaci, M; De Wolf, E A; Delmeire, E; Druzhkin, D; Hashemi, M; Janssen, X; Maes, T; Mucibello, L; Ochesanu, S; Rougny, R; Selvaggi, M; Van Haevermaet, H; Van Mechelen, P; Van Remortel, N; Adler, V; Beauceron, S; Blyweert, S; D'Hondt, J; De Weirdt, S; Devroede, O; Heyninck, J; Kalogeropoulos, A; Maes, J; Maes, M; Mozer, M U; Tavernier, S; Van Doninck, W; Van Mulders, P; Villella, I; Bouhali, O; Chabert, E C; Charaf, O; Clerbaux, B; De Lentdecker, G; Dero, V; Elgammal, S; Gay, A P R; Hammad, G H; Marage, P E; Rugovac, S; Vander Velde, C; Vanlaer, P; Wickens, J; Grunewald, M; Klein, B; Marinov, A; Ryckbosch, D; Thyssen, F; Tytgat, M; Vanelderen, L; Verwilligen, P; Basegmez, S; Bruno, G; Caudron, J; Delaere, C; Demin, P; Favart, D; Giammanco, A; Grégoire, G; Lemaitre, V; Militaru, O; Ovyn, S; Piotrzkowski, K; Quertenmont, L; Schul, N; Beliy, N; Daubie, E; Alves, G A; Pol, M E; Souza, M H G; Carvalho, W; De Jesus Damiao, D; De Oliveira Martins, C; Fonseca De Souza, S; Mundim, L; Oguri, V; Santoro, A; Silva Do Amaral, S M; Sznajder, A; Fernandez Perez Tomei, T R; Ferreira Dias, M A; Gregores, E M; Novaes, S F; Abadjiev, K; Anguelov, T; Damgov, J; Darmenov, N; Dimitrov, L; Genchev, V; Iaydjiev, P; Piperov, S; Stoykova, S; Sultanov, G; Trayanov, R; Vankov, I; Dimitrov, A; Dyulendarova, M; Kozhuharov, V; Litov, L; Marinova, E; Mateev, M; Pavlov, B; Petkov, P; Toteva, Z; Chen, G M; Chen, H S; Guan, W; Jiang, C H; Liang, D; Liu, B; Meng, X; Tao, J; Wang, J; Wang, Z; Xue, Z; Zhang, Z; Ban, Y; Cai, J; Ge, Y; Guo, S; Hu, Z; Mao, Y; Qian, S J; Teng, H; Zhu, B; Avila, C; Baquero Ruiz, M; Carrillo Montoya, C A; Gomez, A; Gomez Moreno, B; Ocampo Rios, A A; Osorio Oliveros, A F; Reyes Romero, D; Sanabria, J C; Godinovic, N; Lelas, K; Plestina, R; Polic, D; Puljak, I; Antunovic, Z; Dzelalija, M; Brigljevic, V; Duric, S; Kadija, K; Morovic, S; Fereos, R; Galanti, M; Mousa, J; Papadakis, A; Ptochos, F; Razis, P A; Tsiakkouri, D; Zinonos, Z; Hektor, A; Kadastik, M; Kannike, K; Müntel, M; Raidal, M; Rebane, L; Anttila, E; Czellar, S; Härkönen, J; Heikkinen, A; Karimäki, V; Kinnunen, R; Klem, J; Kortelainen, M J; Lampén, T; Lassila-Perini, K; Lehti, S; Lindén, T; Luukka, P; Mäenpää, T; Nysten, J; Tuominen, E; Tuominiemi, J; Ungaro, D; Wendland, L; Banzuzi, K; Korpela, A; Tuuva, T; Nedelec, P; Sillou, D; Besancon, M; Chipaux, R; Dejardin, M; Denegri, D; Descamps, J; Fabbro, B; Faure, J L; Ferri, F; Ganjour, S; Gentit, F X; Givernaud, A; Gras, P; Hamel de Monchenault, G; Jarry, P; Lemaire, M C; Locci, E; Malcles, J; Marionneau, M; Millischer, L; Rander, J; Rosowsky, A; Rousseau, D; Titov, M; Verrecchia, P; Baffioni, S; Bianchini, L; Bluj, M; Busson, P; Charlot, C; Dobrzynski, L; Granier de Cassagnac, R; Haguenauer, M; Miné, P; Paganini, P; Sirois, Y; Thiebaux, C; Zabi, A; Agram, J L; Besson, A; Bloch, D; Bodin, D; Brom, J M; Conte, E; Drouhin, F; Fontaine, J C; Gelé, D; Goerlach, U; Gross, L; Juillot, P; Le Bihan, A C; Patois, Y; Speck, J; Van Hove, P; Baty, C; Bedjidian, M; Blaha, J; Boudoul, G; Brun, H; Chanon, N; Chierici, R; Contardo, D; Depasse, P; Dupasquier, T; El Mamouni, H; Fassi, F; Fay, J; Gascon, S; Ille, B; Kurca, T; Le Grand, T; Lethuillier, M; Lumb, N; Mirabito, L; Perries, S; Vander Donckt, M; Verdier, P; Djaoshvili, N; Roinishvili, N; Roinishvili, V; Amaglobeli, N; Adolphi, R; Anagnostou, G; Brauer, R; Braunschweig, W; Edelhoff, M; Esser, H; Feld, L; Karpinski, W; Khomich, A; Klein, K; Mohr, N; Ostaptchouk, A; Pandoulas, D; Pierschel, G; Raupach, F; Schael, S; Schultz von Dratzig, A; Schwering, G; Sprenger, D; Thomas, M; Weber, M; Wittmer, B; Wlochal, M; Actis, O; Altenhöfer, G; Bender, W; Biallass, P; Erdmann, M; Fetchenhauer, G; Frangenheim, J; Hebbeker, T; Hilgers, G; Hinzmann, A; Hoepfner, K; Hof, C; Kirsch, M; Klimkovich, T; Kreuzer, P; Lanske, D; Merschmeyer, M; Meyer, A; Philipps, B; Pieta, H; Reithler, H; Schmitz, S A; Sonnenschein, L; Sowa, M; Steggemann, J; Szczesny, H; Teyssier, D; Zeidler, C; Bontenackels, M; Davids, M; Duda, M; Flügge, G; Geenen, H; Giffels, M; Haj Ahmad, W; Hermanns, T; Heydhausen, D; Kalinin, S; Kress, T; Linn, A; Nowack, A; Perchalla, L; Poettgens, M; Pooth, O; Sauerland, P; Stahl, A; Tornier, D; Zoeller, M H; Aldaya Martin, M; Behrens, U; Borras, K; Campbell, A; Castro, E; Dammann, D; Eckerlin, G; Flossdorf, A; Flucke, G; Geiser, A; Hatton, D; Hauk, J; Jung, H; Kasemann, M; Katkov, I; Kleinwort, C; Kluge, H; Knutsson, A; Kuznetsova, E; Lange, W; Lohmann, W; Mankel, R; Marienfeld, M; Meyer, A B; Miglioranzi, S; Mnich, J; Ohlerich, M; Olzem, J; Parenti, A; Rosemann, C; Schmidt, R; Schoerner-Sadenius, T; Volyanskyy, D; Wissing, C; Zeuner, W D; Autermann, C; Bechtel, F; Draeger, J; Eckstein, D; Gebbert, U; Kaschube, K; Kaussen, G; Klanner, R; Mura, B; Naumann-Emme, S; Nowak, F; Pein, U; Sander, C; Schleper, P; Schum, T; Stadie, H; Steinbrück, G; Thomsen, J; Wolf, R; Bauer, J; Blüm, P; Buege, V; Cakir, A; Chwalek, T; De Boer, W; Dierlamm, A; Dirkes, G; Feindt, M; Felzmann, U; Frey, M; Furgeri, A; Gruschke, J; Hackstein, C; Hartmann, F; Heier, S; Heinrich, M; Held, H; Hirschbuehl, D; Hoffmann, K H; Honc, S; Jung, C; Kuhr, T; Liamsuwan, T; Martschei, D; Mueller, S; Müller, Th; Neuland, M B; Niegel, M; Oberst, O; Oehler, A; Ott, J; Peiffer, T; Piparo, D; Quast, G; Rabbertz, K; Ratnikov, F; Ratnikova, N; Renz, M; Saout, C; Sartisohn, G; Scheurer, A; Schieferdecker, P; Schilling, F P; Schott, G; Simonis, H J; Stober, F M; Sturm, P; Troendle, D; Trunov, A; Wagner, W; Wagner-Kuhr, J; Zeise, M; Zhukov, V; Ziebarth, E B; Daskalakis, G; Geralis, T; Karafasoulis, K; Kyriakis, A; Loukas, D; Markou, A; Markou, C; Mavrommatis, C; Petrakou, E; Zachariadou, A; Gouskos, L; Katsas, P; Panagiotou, A; Evangelou, I; Kokkas, P; Manthos, N; Papadopoulos, I; Patras, V; Triantis, F A; Bencze, G; Boldizsar, L; Debreczeni, G; Hajdu, C; Hernath, S; Hidas, P; Horvath, D; Krajczar, K; Laszlo, A; Patay, G; Sikler, F; Toth, N; Vesztergombi, G; Beni, N; Christian, G; Imrek, J; Molnar, J; Novak, D; Palinkas, J; Szekely, G; Szillasi, Z; Tokesi, K; Veszpremi, V; Kapusi, A; Marian, G; Raics, P; Szabo, Z; Trocsanyi, Z L; Ujvari, B; Zilizi, G; Bansal, S; Bawa, H S; Beri, S B; Bhatnagar, V; Jindal, M; Kaur, M; Kaur, R; Kohli, J M; Mehta, M Z; Nishu, N; Saini, L K; Sharma, A; Singh, A; Singh, J B; Singh, S P; Ahuja, S; Arora, S; Bhattacharya, S; Chauhan, S; Choudhary, B C; Gupta, P; Jain, S; Jain, S; Jha, M; Kumar, A; Ranjan, K; Shivpuri, R K; Srivastava, A K; Choudhury, R K; Dutta, D; Kailas, S; Kataria, S K; Mohanty, A K; Pant, L M; Shukla, P; Topkar, A; Aziz, T; Guchait, M; Gurtu, A; Maity, M; Majumder, D; Majumder, G; Mazumdar, K; Nayak, A; Saha, A; Sudhakar, K; Banerjee, S; Dugad, S; Mondal, N K; Arfaei, H; Bakhshiansohi, H; Fahim, A; Jafari, A; Mohammadi Najafabadi, M; Moshaii, A; Paktinat Mehdiabadi, S; Rouhani, S; Safarzadeh, B; Zeinali, M; Felcini, M; Abbrescia, M; Barbone, L; Chiumarulo, F; Clemente, A; Colaleo, A; Creanza, D; Cuscela, G; De Filippis, N; De Palma, M; De Robertis, G; Donvito, G; Fedele, F; Fiore, L; Franco, M; Iaselli, G; Lacalamita, N; Loddo, F; Lusito, L; Maggi, G; Maggi, M; Manna, N; Marangelli, B; My, S; Natali, S; Nuzzo, S; Papagni, G; Piccolomo, S; Pierro, G A; Pinto, C; Pompili, A; Pugliese, G; Rajan, R; Ranieri, A; Romano, F; Roselli, G; Selvaggi, G; Shinde, Y; Silvestris, L; Tupputi, S; Zito, G; Abbiendi, G; Bacchi, W; Benvenuti, A C; Boldini, M; Bonacorsi, D; Braibant-Giacomelli, S; Cafaro, V D; Caiazza, S S; Capiluppi, P; Castro, A; Cavallo, F R; Codispoti, G; Cuffiani, M; D'Antone, I; Dallavalle, G M; Fabbri, F; Fanfani, A; Fasanella, D; Giacomelli, P; Giordano, V; Giunta, M; Grandi, C; Guerzoni, M; Marcellini, S; Masetti, G; Montanari, A; Navarria, F L; Odorici, F; Pellegrini, G; Perrotta, A; Rossi, A M; Rovelli, T; Siroli, G; Torromeo, G; Travaglini, R; Albergo, S; Costa, S; Potenza, R; Tricomi, A; Tuve, C; Barbagli, G; Broccolo, G; Ciulli, V; Civinini, C; D'Alessandro, R; Focardi, E; Frosali, S; Gallo, E; Genta, C; Landi, G; Lenzi, P; Meschini, M; Paoletti, S; Sguazzoni, G; Tropiano, A; Benussi, L; Bertani, M; Bianco, S; Colafranceschi, S; Colonna, D; Fabbri, F; Giardoni, M; Passamonti, L; Piccolo, D; Pierluigi, D; Ponzio, B; Russo, A; Fabbricatore, P; Musenich, R; Benaglia, A; Calloni, M; Cerati, G B; D'Angelo, P; De Guio, F; Farina, F M; Ghezzi, A; Govoni, P; Malberti, M; Malvezzi, S; Martelli, A; Menasce, D; Miccio, V; Moroni, L; Negri, P; Paganoni, M; Pedrini, D; Pullia, A; Ragazzi, S; Redaelli, N; Sala, S; Salerno, R; Tabarelli de Fatis, T; Tancini, V; Taroni, S; Buontempo, S; Cavallo, N; Cimmino, A; De Gruttola, M; Fabozzi, F; Iorio, A O M; Lista, L; Lomidze, D; Noli, P; Paolucci, P; Sciacca, C; Azzi, P; Bacchetta, N; Barcellan, L; Bellan, P; Bellato, M; Benettoni, M; Biasotto, M; Bisello, D; Borsato, E; Branca, A; Carlin, R; Castellani, L; Checchia, P; Conti, E; Dal Corso, F; De Mattia, M; Dorigo, T; Dosselli, U; Fanzago, F; Gasparini, F; Gasparini, U; Giubilato, P; Gonella, F; Gresele, A; Gulmini, M; Kaminskiy, A; Lacaprara, S; Lazzizzera, I; Margoni, M; Maron, G; Mattiazzo, S; Mazzucato, M; Meneghelli, M; Meneguzzo, A T; Michelotto, M; Montecassiano, F; Nespolo, M; Passaseo, M; Pegoraro, M; Perrozzi, L; Pozzobon, N; Ronchese, P; Simonetto, F; Toniolo, N; Torassa, E; Tosi, M; Triossi, A; Vanini, S; Ventura, S; Zotto, P; Zumerle, G; Baesso, P; Berzano, U; Bricola, S; Necchi, M M; Pagano, D; Ratti, S P; Riccardi, C; Torre, P; Vicini, A; Vitulo, P; Viviani, C; Aisa, D; Aisa, S; Babucci, E; Biasini, M; Bilei, G M; Caponeri, B; Checcucci, B; Dinu, N; Fanò, L; Farnesini, L; Lariccia, P; Lucaroni, A; Mantovani, G; Nappi, A; Piluso, A; Postolache, V; Santocchia, A; Servoli, L; Tonoiu, D; Vedaee, A; Volpe, R; Azzurri, P; Bagliesi, G; Bernardini, J; Berretta, L; Boccali, T; Bocci, A; Borrello, L; Bosi, F; Calzolari, F; Castaldi, R; Dell'Orso, R; Fiori, F; Foà, L; Gennai, S; Giassi, A; Kraan, A; Ligabue, F; Lomtadze, T; Mariani, F; Martini, L; Massa, M; Messineo, A; Moggi, A; Palla, F; Palmonari, F; Petragnani, G; Petrucciani, G; Raffaelli, F; Sarkar, S; Segneri, G; Serban, A T; Spagnolo, P; Tenchini, R; Tolaini, S; Tonelli, G; Venturi, A; Verdini, P G; Baccaro, S; Barone, L; Bartoloni, A; Cavallari, F; Dafinei, I; Del Re, D; Di Marco, E; Diemoz, M; Franci, D; Longo, E; Organtini, G; Palma, A; Pandolfi, F; Paramatti, R; Pellegrino, F; Rahatlou, S; Rovelli, C; Alampi, G; Amapane, N; Arcidiacono, R; Argiro, S; Arneodo, M; Biino, C; Borgia, M A; Botta, C; Cartiglia, N; Castello, R; Cerminara, G; Costa, M; Dattola, D; Dellacasa, G; Demaria, N; Dughera, G; Dumitrache, F; Graziano, A; Mariotti, C; Marone, M; Maselli, S; Migliore, E; Mila, G; Monaco, V; Musich, M; Nervo, M; Obertino, M M; Oggero, S; Panero, R; Pastrone, N; Pelliccioni, M; Romero, A; Ruspa, M; Sacchi, R; Solano, A; Staiano, A; Trapani, P P; Trocino, D; Vilela Pereira, A; Visca, L; Zampieri, A; Ambroglini, F; Belforte, S; Cossutti, F; Della Ricca, G; Gobbo, B; Penzo, A; Chang, S; Chung, J; Kim, D H; Kim, G N; Kong, D J; Park, H; Son, D C; Bahk, S Y; Song, S; Jung, S Y; Hong, B; Kim, H; Kim, J H; Lee, K S; Moon, D H; Park, S K; Rhee, H B; Sim, K S; Kim, J; Choi, M; Hahn, G; Park, I C; Choi, S; Choi, Y; Goh, J; Jeong, H; Kim, T J; Lee, J; Lee, S; Janulis, M; Martisiute, D; Petrov, P; Sabonis, T; Castilla Valdez, H; Sánchez Hernández, A; Carrillo Moreno, S; Morelos Pineda, A; Allfrey, P; Gray, R N C; Krofcheck, D; Bernardino Rodrigues, N; Butler, P H; Signal, T; Williams, J C; Ahmad, M; Ahmed, I; Ahmed, W; Asghar, M I; Awan, M I M; Hoorani, H R; Hussain, I; Khan, W A; Khurshid, T; Muhammad, S; Qazi, S; Shahzad, H; Cwiok, M; Dabrowski, R; Dominik, W; Doroba, K; Konecki, M; Krolikowski, J; Pozniak, K; Romaniuk, Ryszard; Zabolotny, W; Zych, P; Frueboes, T; Gokieli, R; Goscilo, L; Górski, M; Kazana, M; Nawrocki, K; Szleper, M; Wrochna, G; Zalewski, P; Almeida, N; Antunes Pedro, L; Bargassa, P; David, A; Faccioli, P; Ferreira Parracho, P G; Freitas Ferreira, M; Gallinaro, M; Guerra Jordao, M; Martins, P; Mini, G; Musella, P; Pela, J; Raposo, L; Ribeiro, P Q; Sampaio, S; Seixas, J; Silva, J; Silva, P; Soares, D; Sousa, M; Varela, J; Wöhri, H K; Altsybeev, I; Belotelov, I; Bunin, P; Ershov, Y; Filozova, I; Finger, M; Finger, M Jr; Golunov, A; Golutvin, I; Gorbounov, N; Kalagin, V; Kamenev, A; Karjavin, V; Konoplyanikov, V; Korenkov, V; Kozlov, G; Kurenkov, A; Lanev, A; Makankin, A; Mitsyn, V V; Moisenz, P; Nikonov, E; Oleynik, D; Palichik, V; Perelygin, V; Petrosyan, A; Semenov, R; Shmatov, S; Smirnov, V; Smolin, D; Tikhonenko, E; Vasil'ev, S; Vishnevskiy, A; Volodko, A; Zarubin, A; Zhiltsov, V; Bondar, N; Chtchipounov, L; Denisov, A; Gavrikov, Y; Gavrilov, G; Golovtsov, V; Ivanov, Y; Kim, V; Kozlov, V; Levchenko, P; Obrant, G; Orishchin, E; Petrunin, A; Shcheglov, Y; Shchetkovskiy, A; Sknar, V; Smirnov, I; Sulimov, V; Tarakanov, V; Uvarov, L; Vavilov, S; Velichko, G; Volkov, S; Vorobyev, A; Andreev, Yu; Anisimov, A; Antipov, P; Dermenev, A; Gninenko, S; Golubev, N; Kirsanov, M; Krasnikov, N; Matveev, V; Pashenkov, A; Postoev, V E; Solovey, A; Solovey, A; Toropin, A; Troitsky, S; Baud, A; Epshteyn, V; Gavrilov, V; Ilina, N; Kaftanov, V; Kolosov, V; Kossov, M; Krokhotin, A; Kuleshov, S; Oulianov, A; Safronov, G; Semenov, S; Shreyber, I; Stolin, V; Vlasov, E; Zhokin, A; Boos, E; Dubinin, M; Dudko, L; Ershov, A; Gribushin, A; Klyukhin, V; Kodolova, O; Lokhtin, I; Petrushanko, S; Sarycheva, L; Savrin, V; Snigirev, A; Vardanyan, I; Dremin, I; Kirakosyan, M; Konovalova, N; Rusakov, S V; Vinogradov, A; Akimenko, S; Artamonov, A; Azhgirey, I; Bitioukov, S; Burtovoy, V; Grishin, V; Kachanov, V; Konstantinov, D; Krychkine, V; Levine, A; Lobov, I; Lukanin, V; Mel'nik, Y; Petrov, V; Ryutin, R; Slabospitsky, S; Sobol, A; Sytine, A; Tourtchanovitch, L; Troshin, S; Tyurin, N; Uzunian, A; Volkov, A; Adzic, P; Djordjevic, M; Jovanovic, D; Krpic, D; Maletic, D; Puzovic, J; Smiljkovic, N; Aguilar-Benitez, M; Alberdi, J; Alcaraz Maestre, J; Arce, P; Barcala, J M; Battilana, C; Burgos Lazaro, C; Caballero Bejar, J; Calvo, E; Cardenas Montes, M; Cepeda, M; Cerrada, M; Chamizo Llatas, M; Clemente, F; Colino, N; Daniel, M; De La Cruz, B; Delgado Peris, A; Diez Pardos, C; Fernandez Bedoya, C; Fernández Ramos, J P; Ferrando, A; Flix, J; Fouz, M C; Garcia-Abia, P; Garcia-Bonilla, A C; Gonzalez Lopez, O; Goy Lopez, S; Hernandez, J M; Josa, M I; Marin, J; Merino, G; Molina, J; Molinero, A; Navarrete, J J; Oller, J C; Puerta Pelayo, J; Romero, L; Santaolalla, J; Villanueva Munoz, C; Willmott, C; Yuste, C; Albajar, C; Blanco Otano, M; de Trocóniz, J F; Garcia Raboso, A; Lopez Berengueres, J O; Cuevas, J; Fernandez Menendez, J; Gonzalez Caballero, I; Lloret Iglesias, L; Naves Sordo, H; Vizan Garcia, J M; Cabrillo, I J; Calderon, A; Chuang, S H; Diaz Merino, I; Diez Gonzalez, C; Duarte Campderros, J; Fernandez, M; Gomez, G; Gonzalez Sanchez, J; Gonzalez Suarez, R; Jorda, C; Lobelle Pardo, P; Lopez Virto, A; Marco, J; Marco, R; Martinez Rivero, C; Martinez Ruiz del Arbol, P; Matorras, F; Rodrigo, T; Ruiz Jimeno, A; Scodellaro, L; Sobron Sanudo, M; Vila, I; Vilar Cortabitarte, R; Abbaneo, D; Albert, E; Alidra, M; Ashby, S; Auffray, E; Baechler, J; Baillon, P; Ball, A H; Bally, S L; Barney, D; Beaudette, F; Bellan, R; Benedetti, D; Benelli, G; Bernet, C; Bloch, P; Bolognesi, S; Bona, M; Bos, J; Bourgeois, N; Bourrel, T; Breuker, H; Bunkowski, K; Campi, D; Camporesi, T; Cano, E; Cattai, A; Chatelain, J P; Chauvey, M; Christiansen, T; Coarasa Perez, J A; Conde Garcia, A; Covarelli, R; Curé, B; De Roeck, A; Delachenal, V; Deyrail, D; Di Vincenzo, S; Dos Santos, S; Dupont, T; Edera, L M; Elliott-Peisert, A; Eppard, M; Favre, M; Frank, N; Funk, W; Gaddi, A; Gastal, M; Gateau, M; Gerwig, H; Gigi, D; Gill, K; Giordano, D; Girod, J P; Glege, F; Gomez-Reino Garrido, R; Goudard, R; Gowdy, S; Guida, R; Guiducci, L; Gutleber, J; Hansen, M; Hartl, C; Harvey, J; Hegner, B; Hoffmann, H F; Holzner, A; Honma, A; Huhtinen, M; Innocente, V; Janot, P; Le Godec, G; Lecoq, P; Leonidopoulos, C; Loos, R; Lourenço, C; Lyonnet, A; Macpherson, A; Magini, N; Maillefaud, J D; Maire, G; Mäki, T; Malgeri, L; Mannelli, M; Masetti, L; Meijers, F; Meridiani, P; Mersi, S; Meschi, E; Meynet Cordonnier, A; Moser, R; Mulders, M; Mulon, J; Noy, M; Oh, A; Olesen, G; Onnela, A; Orimoto, T; Orsini, L; Perez, E; Perinic, G; Pernot, J F; Petagna, P; Petiot, P; Petrilli, A; Pfeiffer, A; Pierini, M; Pimiä, M; Pintus, R; Pirollet, B; Postema, H; Racz, A; Ravat, S; Rew, S B; Rodrigues Antunes, J; Rolandi, G; Rovere, M; Ryjov, V; Sakulin, H; Samyn, D; Sauce, H; Schäfer, C; Schlatter, W D; Schröder, M; Schwick, C; Sciaba, A; Segoni, I; Sharma, A; Siegrist, N; Siegrist, P; Sinanis, N; Sobrier, T; Sphicas, P; Spiga, D; Spiropulu, M; Stöckli, F; Traczyk, P; Tropea, P; Troska, J; Tsirou, A; Veillet, L; Veres, G I; Voutilainen, M; Wertelaers, P; Zanetti, M; Bertl, W; Deiters, K; Erdmann, W; Gabathuler, K; Horisberger, R; Ingram, Q; Kaestli, H C; König, S; Kotlinski, D; Langenegger, U; Meier, F; Renker, D; Rohe, T; Sibille, J; Starodumov, A; Betev, B; Caminada, L; Chen, Z; Cittolin, S; Da Silva Di Calafiori, D R; Dambach, S; Dissertori, G; Dittmar, M; Eggel, C; Eugster, J; Faber, G; Freudenreich, K; Grab, C; Hervé, A; Hintz, W; Lecomte, P; Luckey, P D; Lustermann, W; Marchica, C; Milenovic, P; Moortgat, F; Nardulli, A; Nessi-Tedaldi, F; Pape, L; Pauss, F; Punz, T; Rizzi, A; Ronga, F J; Sala, L; Sanchez, A K; Sawley, M C; Sordini, V; Stieger, B; Tauscher, L; Thea, A; Theofilatos, K; Treille, D; Trüb, P; Weber, M; Wehrli, L; Weng, J; Zelepoukine, S; Amsler, C; Chiochia, V; De Visscher, S; Regenfus, C; Robmann, P; Rommerskirchen, T; Schmidt, A; Tsirigkas, D; Wilke, L; Chang, Y H; Chen, E A; Chen, W T; Go, A; Kuo, C M; Li, S W; Lin, W; Bartalini, P; Chang, P; Chao, Y; Chen, K F; Hou, W S; Hsiung, Y; Lei, Y J; Lin, S W; Lu, R S; Schümann, J; Shiu, J G; Tzeng, Y M; Ueno, K; Velikzhanin, Y; Wang, C C; Wang, M; Adiguzel, A; Ayhan, A; Azman Gokce, A; Bakirci, M N; Cerci, S; Dumanoglu, I; Eskut, E; Girgis, S; Gurpinar, E; Hos, I; Karaman, T; Karaman, T; Kayis Topaksu, A; Kurt, P; Önengüt, G; Önengüt Gökbulut, G; Ozdemir, K; Ozturk, S; Polatöz, A; Sogut, K; Tali, B; Topakli, H; Uzun, D; Vergili, L N; Vergili, M; Akin, I V; Aliev, T; Bilmis, S; Deniz, M; Gamsizkan, H; Guler, A M; Öcalan, K; Serin, M; Sever, R; Surat, U E; Zeyrek, M; Deliomeroglu, M; Demir, D; Gülmez, E; Halu, A; Isildak, B; Kaya, M; Kaya, O; Ozkorucuklu, S; Sonmez, N; Levchuk, L; Lukyanenko, S; Soroka, D; Zub, S; Bostock, F; Brooke, J J; Cheng, T L; Cussans, D; Frazier, R; Goldstein, J; Grant, N; Hansen, M; Heath, G P; Heath, H F; Hill, C; Huckvale, B; Jackson, J; Mackay, C K; Metson, S; Newbold, D M; Nirunpong, K; Smith, V J; Velthuis, J; Walton, R; Bell, K W; Brew, C; Brown, R M; Camanzi, B; Cockerill, D J A; Coughlan, J A; Geddes, N I; Harder, K; Harper, S; Kennedy, B W; Murray, P; Shepherd-Themistocleous, C H; Tomalin, I R; Williams, J H; Womersley, W J; Worm, S D; Bainbridge, R; Ball, G; Ballin, J; Beuselinck, R; Buchmuller, O; Colling, D; Cripps, N; Davies, G; Della Negra, M; Foudas, C; Fulcher, J; Futyan, D; Hall, G; Hays, J; Iles, G; Karapostoli, G; MacEvoy, B C; Magnan, A M; Marrouche, J; Nash, J; Nikitenko, A; Papageorgiou, A; Pesaresi, M; Petridis, K; Pioppi, M; Raymond, D M; Rompotis, N; Rose, A; Ryan, M J; Seez, C; Sharp, P; Sidiropoulos, G; Stettler, M; Stoye, M; Takahashi, M; Tapper, A; Timlin, C; Tourneur, S; Vazquez Acosta, M; Virdee, T; Wakefield, S; Wardrope, D; Whyntie, T; Wingham, M; Cole, J E; Goitom, I; Hobson, P R; Khan, A; Kyberd, P; Leslie, D; Munro, C; Reid, I D; Siamitros, C; Taylor, R; Teodorescu, L; Yaselli, I; Bose, T; Carleton, M; Hazen, E; Heering, A H; Heister, A; John, J St; Lawson, P; Lazic, D; Osborne, D; Rohlf, J; Sulak, L; Wu, S; Andrea, J; Avetisyan, A; Bhattacharya, S; Chou, J P; Cutts, D; Esen, S; Kukartsev, G; Landsberg, G; Narain, M; Nguyen, D; Speer, T; Tsang, K V; Breedon, R; Calderon De La Barca Sanchez, M; Case, M; Cebra, D; Chertok, M; Conway, J; Cox, P T; Dolen, J; Erbacher, R; Friis, E; Ko, W; Kopecky, A; Lander, R; Lister, A; Liu, H; Maruyama, S; Miceli, T; Nikolic, M; Pellett, D; Robles, J; Searle, M; Smith, J; Squires, M; Stilley, J; Tripathi, M; Vasquez Sierra, R; Veelken, C; Andreev, V; Arisaka, K; Cline, D; Cousins, R; Erhan, S; Hauser, J; Ignatenko, M; Jarvis, C; Mumford, J; Plager, C; Rakness, G; Schlein, P; Tucker, J; Valuev, V; Wallny, R; Yang, X; Babb, J; Bose, M; Chandra, A; Clare, R; Ellison, J A; Gary, J W; Hanson, G; Jeng, G Y; Kao, S C; Liu, F; Liu, H; Luthra, A; Nguyen, H; Pasztor, G; Satpathy, A; Shen, B C; Stringer, R; Sturdy, J; Sytnik, V; Wilken, R; Wimpenny, S; Branson, J G; Dusinberre, E; Evans, D; Golf, F; Kelley, R; Lebourgeois, M; Letts, J; Lipeles, E; Mangano, B; Muelmenstaedt, J; Norman, M; Padhi, S; Petrucci, A; Pi, H; Pieri, M; Ranieri, R; Sani, M; Sharma, V; Simon, S; Würthwein, F; Yagil, A; Campagnari, C; D'Alfonso, M; Danielson, T; Garberson, J; Incandela, J; Justus, C; Kalavase, P; Koay, S A; Kovalskyi, D; Krutelyov, V; Lamb, J; Lowette, S; Pavlunin, V; Rebassoo, F; Ribnik, J; Richman, J; Rossin, R; Stuart, D; To, W; Vlimant, J R; Witherell, M; Apresyan, A; Bornheim, A; Bunn, J; Chiorboli, M; Gataullin, M; Kcira, D; Litvine, V; Ma, Y; Newman, H B; Rogan, C; Timciuc, V; Veverka, J; Wilkinson, R; Yang, Y; Zhang, L; Zhu, K; Zhu, R Y; Akgun, B; Carroll, R; Ferguson, T; Jang, D W; Jun, S Y; Paulini, M; Russ, J; Terentyev, N; Vogel, H; Vorobiev, I; Cumalat, J P; Dinardo, M E; Drell, B R; Ford, W T; Heyburn, B; Luiggi Lopez, E; Nauenberg, U; Stenson, K; Ulmer, K; Wagner, S R; Zang, S L; Agostino, L; Alexander, J; Blekman, F; Cassel, D; Chatterjee, A; Das, S; Gibbons, L K; Heltsley, B; Hopkins, W; Khukhunaishvili, A; Kreis, B; Kuznetsov, V; Patterson, J R; Puigh, D; Ryd, A; Shi, X; Stroiney, S; Sun, W; Teo, W D; Thom, J; Vaughan, J; Weng, Y; Wittich, P; Beetz, C P; Cirino, G; Sanzeni, C; Winn, D; Abdullin, S; Afaq, M A; Albrow, M; Ananthan, B; Apollinari, G; Atac, M; Badgett, W; Bagby, L; Bakken, J A; Baldin, B; Banerjee, S; Banicz, K; Bauerdick, L A T; Beretvas, A; Berryhill, J; Bhat, P C; Biery, K; Binkley, M; Bloch, I; Borcherding, F; Brett, A M; Burkett, K; Butler, J N; Chetluru, V; Cheung, H W K; Chlebana, F; Churin, I; Cihangir, S; Crawford, M; Dagenhart, W; Demarteau, M; Derylo, G; Dykstra, D; Eartly, D P; Elias, J E; Elvira, V D; Evans, D; Feng, L; Fischler, M; Fisk, I; Foulkes, S; Freeman, J; Gartung, P; Gottschalk, E; Grassi, T; Green, D; Guo, Y; Gutsche, O; Hahn, A; Hanlon, J; Harris, R M; Holzman, B; Howell, J; Hufnagel, D; James, E; Jensen, H; Johnson, M; Jones, C D; Joshi, U; Juska, E; Kaiser, J; Klima, B; Kossiakov, S; Kousouris, K; Kwan, S; Lei, C M; Limon, P; Lopez Perez, J A; Los, S; Lueking, L; Lukhanin, G; Lusin, S; Lykken, J; Maeshima, K; Marraffino, J M; Mason, D; McBride, P; Miao, T; Mishra, K; Moccia, S; Mommsen, R; Mrenna, S; Muhammad, A S; Newman-Holmes, C; Noeding, C; O'Dell, V; Prokofyev, O; Rivera, R; Rivetta, C H; Ronzhin, A; Rossman, P; Ryu, S; Sekhri, V; Sexton-Kennedy, E; Sfiligoi, I; Sharma, S; Shaw, T M; Shpakov, D; Skup, E; Smith, R P; Soha, A; Spalding, W J; Spiegel, L; Suzuki, I; Tan, P; Tanenbaum, W; Tkaczyk, S; Trentadue, R; Uplegger, L; Vaandering, E W; Vidal, R; Whitmore, J; Wicklund, E; Wu, W; Yarba, J; Yumiceva, F; Yun, J C; Acosta, D; Avery, P; Barashko, V; Bourilkov, D; Chen, M; Di Giovanni, G P; Dobur, D; Drozdetskiy, A; Field, R D; Fu, Y; Furic, I K; Gartner, J; Holmes, D; Kim, B; Klimenko, S; Konigsberg, J; Korytov, A; Kotov, K; Kropivnitskaya, A; Kypreos, T; Madorsky, A; Matchev, K; Mitselmakher, G; Pakhotin, Y; Piedra Gomez, J; Prescott, C; Rapsevicius, V; Remington, R; Schmitt, M; Scurlock, B; Wang, D; Yelton, J; Ceron, C; Gaultney, V; Kramer, L; Lebolo, L M; Linn, S; Markowitz, P; Martinez, G; Rodriguez, J L; Adams, T; Askew, A; Baer, H; Bertoldi, M; Chen, J; Dharmaratna, W G D; Gleyzer, S V; Haas, J; Hagopian, S; Hagopian, V; Jenkins, M; Johnson, K F; Prettner, E; Prosper, H; Sekmen, S; Baarmand, M M; Guragain, S; Hohlmann, M; Kalakhety, H; Mermerkaya, H; Ralich, R; Vodopiyanov, I; Abelev, B; Adams, M R; Anghel, I M; Apanasevich, L; Bazterra, V E; Betts, R R; Callner, J; Castro, M A; Cavanaugh, R; Dragoiu, C; Garcia-Solis, E J; Gerber, C E; Hofman, D J; Khalatian, S; Mironov, C; Shabalina, E; Smoron, A; Varelas, N; Akgun, U; Albayrak, E A; Ayan, A S; Bilki, B; Briggs, R; Cankocak, K; Chung, K; Clarida, W; Debbins, P; Duru, F; Ingram, F D; Lae, C K; McCliment, E; Merlo, J P; Mestvirishvili, A; Miller, M J; Moeller, A; Nachtman, J; Newsom, C R; Norbeck, E; Olson, J; Onel, Y; Ozok, F; Parsons, J; Schmidt, I; Sen, S; Wetzel, J; Yetkin, T; Yi, K; Barnett, B A; Blumenfeld, B; Bonato, A; Chien, C Y; Fehling, D; Giurgiu, G; Gritsan, A V; Guo, Z J; Maksimovic, P; Rappoccio, S; Swartz, M; Tran, N V; Zhang, Y; Baringer, P; Bean, A; Grachov, O; Murray, M; Radicci, V; Sanders, S; Wood, J S; Zhukova, V; Bandurin, D; Bolton, T; Kaadze, K; Liu, A; Maravin, Y; Onoprienko, D; Svintradze, I; Wan, Z; Gronberg, J; Hollar, J; Lange, D; Wright, D; Baden, D; Bard, R; Boutemeur, M; Eno, S C; Ferencek, D; Hadley, N J; Kellogg, R G; Kirn, M; Kunori, S; Rossato, K; Rumerio, P; Santanastasio, F; Skuja, A; Temple, J; Tonjes, M B; Tonwar, S C; Toole, T; Twedt, E; Alver, B; Bauer, G; Bendavid, J; Busza, W; Butz, E; Cali, I A; Chan, M; D'Enterria, D; Everaerts, P; Gomez Ceballos, G; Hahn, K A; Harris, P; Jaditz, S; Kim, Y; Klute, M; Lee, Y J; Li, W; Loizides, C; Ma, T; Miller, M; Nahn, S; Paus, C; Roland, C; Roland, G; Rudolph, M; Stephans, G; Sumorok, K; Sung, K; Vaurynovich, S; Wenger, E A; Wyslouch, B; Xie, S; Yilmaz, Y; Yoon, A S; Bailleux, D; Cooper, S I; Cushman, P; Dahmes, B; De Benedetti, A; Dolgopolov, A; Dudero, P R; Egeland, R; Franzoni, G; Haupt, J; Inyakin, A; Klapoetke, K; Kubota, Y; Mans, J; Mirman, N; Petyt, D; Rekovic, V; Rusack, R; Schroeder, M; Singovsky, A; Zhang, J; Cremaldi, L M; Godang, R; Kroeger, R; Perera, L; Rahmat, R; Sanders, D A; Sonnek, P; Summers, D; Bloom, K; Bockelman, B; Bose, S; Butt, J; Claes, D R; Dominguez, A; Eads, M; Keller, J; Kelly, T; Kravchenko, I; Lazo-Flores, J; Lundstedt, C; Malbouisson, H; Malik, S; Snow, G R; Baur, U; Iashvili, I; Kharchilava, A; Kumar, A; Smith, K; Strang, M; Alverson, G; Barberis, E; Boeriu, O; Eulisse, G; Govi, G; McCauley, T; Musienko, Y; Muzaffar, S; Osborne, I; Paul, T; Reucroft, S; Swain, J; Taylor, L; Tuura, L; Anastassov, A; Gobbi, B; Kubik, A; Ofierzynski, R A; Pozdnyakov, A; Schmitt, M; Stoynev, S; Velasco, M; Won, S; Antonelli, L; Berry, D; Hildreth, M; Jessop, C; Karmgard, D J; Kolberg, T; Lannon, K; Lynch, S; Marinelli, N; Morse, D M; Ruchti, R; Slaunwhite, J; Warchol, J; Wayne, M; Bylsma, B; Durkin, L S; Gilmore, J; Gu, J; Killewald, P; Ling, T Y; Williams, G; Adam, N; Berry, E; Elmer, P; Garmash, A; Gerbaudo, D; Halyo, V; Hunt, A; Jones, J; Laird, E; Marlow, D; Medvedeva, T; Mooney, M; Olsen, J; Piroué, P; Stickland, D; Tully, C; Werner, J S; Wildish, T; Xie, Z; Zuranski, A; Acosta, J G; Bonnett Del Alamo, M; Huang, X T; Lopez, A; Mendez, H; Oliveros, S; Ramirez Vargas, J E; Santacruz, N; Zatzerklyany, A; Alagoz, E; Antillon, E; Barnes, V E; Bolla, G; Bortoletto, D; Everett, A; Garfinkel, A F; Gecse, Z; Gutay, L; Ippolito, N; Jones, M; Koybasi, O; Laasanen, A T; Leonardo, N; Liu, C; Maroussov, V; Merkel, P; Miller, D H; Neumeister, N; Sedov, A; Shipsey, I; Yoo, H D; Zheng, Y; Jindal, P; Parashar, N; Cuplov, V; Ecklund, K M; Geurts, F J M; Liu, J H; Maronde, D; Matveev, M; Padley, B P; Redjimi, R; Roberts, J; Sabbatini, L; Tumanov, A; Betchart, B; Bodek, A; Budd, H; Chung, Y S; de Barbaro, P; Demina, R; Flacher, H; Gotra, Y; Harel, A; Korjenevski, S; Miner, D C; Orbaker, D; Petrillo, G; Vishnevskiy, D; Zielinski, M; Bhatti, A; Demortier, L; Goulianos, K; Hatakeyama, K; Lungu, G; Mesropian, C; Yan, M; Atramentov, O; Bartz, E; Gershtein, Y; Halkiadakis, E; Hits, D; Lath, A; Rose, K; Schnetzer, S; Somalwar, S; Stone, R; Thomas, S; Watts, T L; Cerizza, G; Hollingsworth, M; Spanier, S; Yang, Z C; York, A; Asaadi, J; Aurisano, A; Eusebi, R; Golyash, A; Gurrola, A; Kamon, T; Nguyen, C N; Pivarski, J; Safonov, A; Sengupta, S; Toback, D; Weinberger, M; Akchurin, N; Berntzon, L; Gumus, K; Jeong, C; Kim, H; Lee, S W; Popescu, S; Roh, Y; Sill, A; Volobouev, I; Washington, E; Wigmans, R; Yazgan, E; Engh, D; Florez, C; Johns, W; Pathak, S; Sheldon, P; Andelin, D; Arenton, M W; Balazs, M; Boutle, S; Buehler, M; Conetti, S; Cox, B; Hirosky, R; Ledovskoy, A; Neu, C; Phillips II, D; Ronquest, M; Yohay, R; Gollapinni, S; Gunthoti, K; Harr, R; Karchin, P E; Mattson, M; Sakharov, A; Anderson, M; Bachtis, M; Bellinger, J N; Carlsmith, D; Crotty, I; Dasu, S; Dutta, S; Efron, J; Feyzi, F; Flood, K; Gray, L; Grogg, K S; Grothe, M; Hall-Wilton, R; Jaworski, M; Klabbers, P; Klukas, J; Lanaro, A; Lazaridis, C; Leonard, J; Loveless, R; Magrans de Abril, M; Mohapatra, A; Ott, G; Polese, G; Reeder, D; Savin, A; Smith, W H; Sourkov, A; Swanson, J; Weinberg, M; Wenman, D; Wensveen, M; White, A

    2010-01-01

    The CMS muon system has been aligned using cosmic-ray muons collected in 2008 and beam-halo muons from the 2008 LHC circulating beam tests. After alignment, the resolution of the most sensitive coordinate is 80 microns for the relative positions of superlayers in the same barrel chamber and 270 microns for the relative positions ofendcap chambers in the same ring structure. The resolution on the position of the central barrel chambers relative to the tracker is comprised between two extreme estimates, 200 and 700 microns, provided by two complementary studies. With minor modifications, the alignment procedures can be applied using muons from LHC collisions, leading to additional significant improvements.

  14. BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks

    DEFF Research Database (Denmark)

    Alkan, Ferhat; Erten, Cesim

    2014-01-01

    MOTIVATION: Global many-to-many alignment of biological networks has been a central problem in comparative biological network studies. Given a set of biological interaction networks, the informal goal is to group together related nodes. For the case of protein-protein interaction networks...... are conserved across the input networks. We provide a formal definition of the global many-to-many alignment of multiple protein-protein interaction networks that captures this informal objective. We show the computational intractability of the suggested definition. We provide a heuristic method based...... on backbone extraction and merge strategy (BEAMS) for the problem. We finally show, through experiments based on biological significance tests, that the proposed BEAMS algorithm performs better than the state-of-the-art approaches. Furthermore, the computational burden of the BEAMS algorithm in terms...

  15. Alignment Sensitivity Study of the St. ANA Beam Line

    Science.gov (United States)

    Gervais, Michelle; Couder, Manoel; Jung, Hyo Soon; Setoodehnia, Kiana

    2014-09-01

    The St. ANA (STable Accelerator for Nuclear Astrophysics) accelerator is being prepared for use with the St. George recoil mass separator. The accelerator is in working condition for use in direct kinematic experiments but the St. George separator works with inverse kinematics and requires a highly controlled beam restricted by severe position and divergence parameters that are not achieved at the present time. A systematic sensitivity study was conducted using a simulation of the beam line in order to assess the impact of a misalignment in each optical element or in the beam itself. Tests were done with the beam to analyze how the beam behaves at various points in the line and to compare this data with simulation results to determine possible causes of misalignment. The results of these tests and simulations are that the beam characteristics are now better understood and the possible causes of the limitations have been narrowed down. The St. ANA (STable Accelerator for Nuclear Astrophysics) accelerator is being prepared for use with the St. George recoil mass separator. The accelerator is in working condition for use in direct kinematic experiments but the St. George separator works with inverse kinematics and requires a highly controlled beam restricted by severe position and divergence parameters that are not achieved at the present time. A systematic sensitivity study was conducted using a simulation of the beam line in order to assess the impact of a misalignment in each optical element or in the beam itself. Tests were done with the beam to analyze how the beam behaves at various points in the line and to compare this data with simulation results to determine possible causes of misalignment. The results of these tests and simulations are that the beam characteristics are now better understood and the possible causes of the limitations have been narrowed down. Project advisor

  16. Triangular Alignment (TAME). A Tensor-based Approach for Higher-order Network Alignment

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadi, Shahin [Purdue Univ., West Lafayette, IN (United States); Gleich, David F. [Purdue Univ., West Lafayette, IN (United States); Kolda, Tamara G. [Sandia National Laboratories (SNL-CA), Livermore, CA (United States); Grama, Ananth [Purdue Univ., West Lafayette, IN (United States)

    2015-11-01

    Network alignment is an important tool with extensive applications in comparative interactomics. Traditional approaches aim to simultaneously maximize the number of conserved edges and the underlying similarity of aligned entities. We propose a novel formulation of the network alignment problem that extends topological similarity to higher-order structures and provide a new objective function that maximizes the number of aligned substructures. This objective function corresponds to an integer programming problem, which is NP-hard. Consequently, we approximate this objective function as a surrogate function whose maximization results in a tensor eigenvalue problem. Based on this formulation, we present an algorithm called Triangular AlignMEnt (TAME), which attempts to maximize the number of aligned triangles across networks. We focus on alignment of triangles because of their enrichment in complex networks; however, our formulation and resulting algorithms can be applied to general motifs. Using a case study on the NAPABench dataset, we show that TAME is capable of producing alignments with up to 99% accuracy in terms of aligned nodes. We further evaluate our method by aligning yeast and human interactomes. Our results indicate that TAME outperforms the state-of-art alignment methods both in terms of biological and topological quality of the alignments.

  17. Pyro-Align: Sample-Align based Multiple Alignment system for Pyrosequencing Reads of Large Number

    CERN Document Server

    Saeed, Fahad

    2009-01-01

    Pyro-Align is a multiple alignment program specifically designed for pyrosequencing reads of huge number. Multiple sequence alignment is shown to be NP-hard and heuristics are designed for approximate solutions. Multiple sequence alignment of pyrosequenceing reads is complex mainly because of 2 factors. One being the huge number of reads, making the use of traditional heuristics,that scale very poorly for large number, unsuitable. The second reason is that the alignment cannot be performed arbitrarily, because the position of the reads with respect to the original genome is important and has to be taken into account.In this report we present a short description of the multiple alignment system for pyrosequencing reads.

  18. Beam-Based Procedures for RF Guns

    CERN Document Server

    Krasilnikov, Mikhail; Grabosch, H J; Hartrott, Michael; Hui Han, Jang; Miltchev, Velizar; Oppelt, Anne; Petrosyan, Bagrat; Staykov, Lazar; Stephan, Frank

    2005-01-01

    A wide range of rf photo injector parameters has to be optimized in order to achieve an electron source performance as required for linac based high gain FELs. Some of the machine parameters can not be precisely controlled by direct measurements, whereas the tolerance on them is extremely tight. Therefore, this should be met with beam-based techniques. Procedures for beam-based alignment (BBA) of the laser on the photo cathode as well as solenoid alignment have been developed. They were applied at the Photo Injector Test facility at DESY Zeuthen (PITZ) and at the photo injector of the VUV-FEL at DESY Hamburg. A field balance of the accelerating mode in the 1 ½ cell gun cavity is one of the key beam dynamics issues of the rf gun. Since no direct field measurement in the half and full cell of the cavity is available for the PITZ gun, a beam-based technique to determine the field balance has been proposed. A beam-based rf phase monitoring procedure has been developed as well.

  19. Damped and thermal motion of large, laser-aligned molecules in droplet beams

    Energy Technology Data Exchange (ETDEWEB)

    Starodub, D; Doak, B; Schmidt, K; Weierstall, U; Wu, J; Spence, J; Howells, M; Marcus, M; Shapiro, D; Barty, A; Chapman, H

    2005-09-29

    We consider a monodispersed Rayleigh droplet beam of water droplets doped with proteins. An intense infrared laser is used to align these droplets. The arrangement has been proposed for electron and X-ray diffraction studies of proteins which are difficult to crystallize. This paper considers the effect of thermal fluctuations on the angular spread of alignment in thermal equilibrium, and relaxation phenomena, particularly the damping of oscillations excited as the molecules enter the field. The possibility of adiabatic alignment is also considered. We find that damping times in high pressure gas cell as used in X-ray diffraction experiments are short compared to the time taken for molecules to traverse the beam, and that a suitably shaped field might be used for electron diffraction experiments in vacuum to provide adiabatic alignment, thus obviating the need for a damping gas cell.

  20. Measuring prosodic alignment in cooperative task-based conversations

    NARCIS (Netherlands)

    Truong, Khiet P.; Heylen, Dirk

    2012-01-01

    In this paper, we investigate prosodic alignment in task-based conversations. We use the HCRC Map Task Corpus and investigate how familiarity affects prosodic alignment and how task success is related to prosodic alignment. A variety of existing alignment measures is used and applied to our data. In

  1. Alignment of multiple-off-axis-beam imaging/interference systems.

    Science.gov (United States)

    Vadivel, Shruthi K; Leibovici, Matthieu C R; Gaylord, Thomas K

    2016-04-20

    The alignment of components in complex multibeam arrangements is typically prone to errors that limit the performance of the system. A systematic procedure for aligning such systems is presented here. The method facilitates the precision alignment of the optical elements to achieve the accurate projection of multiple on- and off-axis images and the simultaneous interference of the multiple beams. In addition to the multibeam imaging/interference system presented, the procedure can be employed in other multibeam imaging and/or interfering configurations.

  2. Fast Implementation of Matched Filter Based Automatic Alignment Image Processing

    Energy Technology Data Exchange (ETDEWEB)

    Awwal, A S; Rice, K; Taha, T

    2008-04-02

    Video images of laser beams imprinted with distinguishable features are used for alignment of 192 laser beams at the National Ignition Facility (NIF). Algorithms designed to determine the position of these beams enable the control system to perform the task of alignment. Centroiding is a common approach used for determining the position of beams. However, real world beam images suffer from intensity fluctuation or other distortions which make such an approach susceptible to higher position measurement variability. Matched filtering used for identifying the beam position results in greater stability of position measurement compared to that obtained using the centroiding technique. However, this gain is achieved at the expense of extra processing time required for each beam image. In this work we explore the possibility of using a field programmable logic array (FPGA) to speed up these computations. The results indicate a performance improvement of 20 using the FPGA relative to a 3 GHz Pentium 4 processor.

  3. Study and Development of a Laser Based Alignment System

    CERN Multimedia

    Stern, G

    2014-01-01

    CLIC (Compact Linear Collider) has tight requirements regarding pre-alignment of beam related components: 10 µm accuracy over a sliding window of 200 m along the 20 km of linac. To perform such an alignment, a new system is proposed combining laser beam as straight line reference and camera/shutter assemblies as sensors. The poster describes the alignment system and shows results regarding laser pointing stability with respect to time, shutter type, distance and environment. These results give a frame for future building and calibrating of sensors.

  4. Feasibility study of multipoint based laser alignment system for CLIC

    CERN Document Server

    Stern, G; Mainaud-Durand, H; Piedigrossi, D; Geiger, A

    2012-01-01

    CLIC (Compact LInear Collider) is a study for a future electron-positron collider that would allow physicists to explore a new energy region beyond the capabilities oftoday’s particle accelerators. Alignment is one of the major challenges within the CLIC study in order to achieve the high requirement of a multi-TeV center of mass colliding beam energy range (nominal 3 TeV). To reach this energy in a realistic and cost efficient scenario all accelerator components have to be aligned with an accuracy of 10 μm over a sliding window of 200 m. The demand for a straight line reference is so far based on stretched wires coupled with Wire Positioning Sensors (WPS). These solutions are currently further developed inorder to reduce the drawbacks which are mainly given by their costs and difficult implementation. However, it should be validated through inter-comparison with a solution ideally based on a different physical principle. Therefore, a new metrological approach is proposed using a laser beam as straight lin...

  5. Design process for NIF laser alignment and beam diagnostics

    Energy Technology Data Exchange (ETDEWEB)

    Grey, A., LLNL

    1998-06-09

    In a controller for an adaptive optic system designed to correct phase aberrations in a high power laser, the wavefront sensor is a discrete Hartmann-Shack design. It uses an army of lenslets (like a fly` s eye) to focus the laser into 77 spots on a CCD camera. Average local tilt of the wavefront across each lenslet changes the position of its focal spot. The system requires 0.1 pixel accuracy in determining the focal spot location. We determine a small area around each spot` s previous location. Within this area, we calculate the centroid of the light intensity in x and y. This calculation fails if the spot regions overlap. Especially during initial acquisition of a highly distorted beam, distinguishing overlapping spots is difficult. However, low resolution analysis of the overlapping spots allows the system to estimate their positions. With this estimate, it can use the deformable mirror to correct the beam enough so we can detect the spots using conventional image processing.

  6. Seebeck effect position sensor for CO/sub 2/ laser beam alignment

    Energy Technology Data Exchange (ETDEWEB)

    Hammond, R.B.; Gruhn, C.R.

    1979-09-01

    A new concept for a laser position sensor is presented. The device utilizes the Seebeck effect in semiconductors. Results using a Si detector show position linearity and energy linearity of the device signal. A theoretical model explaining the operation of the device is outlined. Applications to pulsed laser beam alignment are discussed.

  7. Alignment of the Pixel and SCT Modules for the 2004 ATLAS Combined Test Beam

    Energy Technology Data Exchange (ETDEWEB)

    ATLAS Collaboration; Ahmad, A.; Andreazza, A.; Atkinson, T.; Baines, J.; Barr, A.J.; Beccherle, R.; Bell, P.J.; Bernabeu, J.; Broklova, Z.; Bruckman de Renstrom, P.A.; Cauz, D.; Chevalier, L.; Chouridou, S.; Citterio, M.; Clark, A.; Cobal, M.; Cornelissen, T.; Correard, S.; Costa, M.J.; Costanzo, D.; Cuneo, S.; Dameri, M.; Darbo, G.; de Vivie, J.B.; Di Girolamo, B.; Dobos, D.; Drasal, Z.; Drohan, J.; Einsweiler, K.; Elsing, M.; Emelyanov, D.; Escobar, C.; Facius, K.; Ferrari, P.; Fergusson, D.; Ferrere, D.; Flick,, T.; Froidevaux, D.; Gagliardi, G.; Gallas, M.; Gallop, B.J.; Gan, K.K.; Garcia, C.; Gavrilenko, I.L.; Gemme, C.; Gerlach, P.; Golling, T.; Gonzalez-Sevilla, S.; Goodrick, M.J.; Gorfine, G.; Gottfert, T.; Grosse-Knetter, J.; Hansen, P.H.; Hara, K.; Hartel, R.; Harvey, A.; Hawkings, R.J.; Heinemann, F.E.W.; Henss, T.; Hill, J.C.; Huegging, F.; Jansen, E.; Joseph, J.; Unel, M. Karagoz; Kataoka, M.; Kersten, S.; Khomich, A.; Klingenberg, R.; Kodys, P.; Koffas, T.; Konstantinidis, N.; Kostyukhin, V.; Lacasta, C.; Lari, T.; Latorre, S.; Lester, C.G.; Liebig, W.; Lipniacka, A.; Lourerio, K.F.; Mangin-Brinet, M.; Marti i Garcia, S.; Mathes, M.; Meroni, C.; Mikulec, B.; Mindur, B.; Moed, S.; Moorhead, G.; Morettini, P.; Moyse, E.W.J.; Nakamura, K.; Nechaeva, P.; Nikolaev, K.; Parodi, F.; Parzhitskiy, S.; Pater, J.; Petti, R.; Phillips, P.W.; Pinto, B.; Poppleton, A.; Reeves, K.; Reisinger, I.; Reznicek, P.; Risso, P.; Robinson, D.; Roe, S.; Rozanov, A.; Salzburger, A.; Sandaker, H.; Santi, L.; Schiavi, C.; Schieck, J.; Schultes, J.; Sfyrla, A.; Shaw, C.; Tegenfeldt, F.; Timmermans, C.J.W.P.; Toczek, B.; Troncon, C.; Tyndel, M.; Vernocchi, F.; Virzi, J.; Anh, T. Vu; Warren, M.; Weber, J.; Weber, M.; Weidberg, A.R.; Weingarten, J.; Wellsf, P.S.; Zhelezkow, A.

    2008-06-02

    A small set of final prototypes of the ATLAS Inner Detector silicon tracking system(Pixel Detector and SemiConductor Tracker), were used to take data during the 2004 Combined Test Beam. Data were collected from runs with beams of different flavour (electrons, pions, muons and photons) with a momentum range of 2 to 180 GeV/c. Four independent methods were used to align the silicon modules. The corrections obtained were validated using the known momenta of the beam particles and were shown to yield consistent results among the different alignment approaches. From the residual distributions, it is concluded that the precision attained in the alignmentof the silicon modules is of the order of 5 mm in their most precise coordinate.

  8. Automatic laser beam alignment using blob detection for an environment monitoring spectroscopy

    Science.gov (United States)

    Khidir, Jarjees; Chen, Youhua; Anderson, Gary

    2013-05-01

    This paper describes a fully automated system to align an infra-red laser beam with a small retro-reflector over a wide range of distances. The component development and test were especially used for an open-path spectrometer gas detection system. Using blob detection under OpenCV library, an automatic alignment algorithm was designed to achieve fast and accurate target detection in a complex background environment. Test results are presented to show that the proposed algorithm has been successfully applied to various target distances and environment conditions.

  9. Effective Electrocardiogram Steganography Based on Coefficient Alignment.

    Science.gov (United States)

    Yang, Ching-Yu; Wang, Wen-Fong

    2016-03-01

    This study presents two types of data hiding methods based on coefficient alignment for electrocardiogram (ECG) signals, namely, lossy and reversible ECG steganographys. The lossy method is divided into high-quality and high-capacity ECG steganography, both of which are capable of hiding confidential patient data in ECG signals. The reversible data hiding method can not only hide secret messages but also completely restore the original ECG signal after bit extraction. Simulations confirmed that the perceived quality generated by the lossy ECG steganography methods was good, while hiding capacity was acceptable. In addition, these methods have a certain degree of robustness, which is rare in conventional ECG stegangraphy schemes. Moreover, the proposed reversible ECG steganography method can not only successfully extract hidden messages but also completely recover the original ECG data.

  10. Advances in mask fabrication and alignment for masked ion-beam lithography

    Science.gov (United States)

    Stumbo, David P.; Damm, George A.; Engler, D. W.; Fong, F. O.; Sen, S.; Wolfe, John C.; Randall, John N.; Mauger, Phillip E.; Shimkunas, Alex R.; Loeschne, Hans

    1990-05-01

    This paper describes recent developments in three areas ofmasked ion beam lithography (MIBL). These are 1) fabrication oflarge area, low distortion, silicon stencilmasks for demagnifying ion projection lithography, 2) fabrication ofstencil masks with nanometer scale resolution for 1:1 proximity printing, and 3) development of a direct method of alignment using the ion beam induced fluorescence of Si02. These topics are discussed below. Demagnifying ion projection masks: We describe the fabrication of stencil masks in large area, low stress (10 MPa), n-type silicon membranes. The projection masks have a silicon foil area 95 mm in diameter, thicknesses between 1.5-5 and resolution of0.6um. Measured distortion (3a) in the IPL masks ranges between 0.23gm and 0.65,um, with an experimental error of 0.20 1um. Proximity printing masks: A process is described for fabricating stencil masks with 50 nm resolution in low stress, n-type silicon membranes. Membranes less than 0.5 ,ttm thick are shown to be free of the sidewall taper that limits resolution in thicker masks. These thin membranes show a slightly flared profile due to the imperfectly collimated etching ions. Alignment: A direct method of alignment is being developed which uses the ion beam induced fluorescence of Si02 marks. Fluorescence yield is characterized as a function of ion energy and resist coating thickness. The yield for Si02 is in the range between 0.1-1.0 photons/proton, while the yields for Si, Al, and photoresist are negligibly small. Thus, a simple alignment technique can be implemented where registration of a grating in the mask with a corresponding oxide pattern is detected as a fluorescence maximum. A simple model predicts that 50 nm alignment can be accomplished, following a 1 im prealignment, in 2 seconds.

  11. A fast cross-validation method for alignment of electron tomography images based on Beer-Lambert law

    Science.gov (United States)

    Yan, Rui; Edwards, Thomas J.; Pankratz, Logan M.; Kuhn, Richard J.; Lanman, Jason K.; Liu, Jun; Jiang, Wen

    2015-01-01

    In electron tomography, accurate alignment of tilt series is an essential step in attaining high-resolution 3D reconstructions. Nevertheless, quantitative assessment of alignment quality has remained a challenging issue, even though many alignment methods have been reported. Here, we report a fast and accurate method, tomoAlignEval, based on the Beer-Lambert law, for the evaluation of alignment quality. Our method is able to globally estimate the alignment accuracy by measuring the goodness of log-linear relationship of the beam intensity attenuations at different tilt angles. Extensive tests with experimental data demonstrated its robust performance with stained and cryo samples. Our method is not only significantly faster but also more sensitive than measurements of tomogram resolution using Fourier shell correlation method (FSCe/o). From these tests, we also conclude that while current alignment methods are sufficiently accurate for stained samples, inaccurate alignments remain a major limitation for high resolution cryo-electron tomography. PMID:26455556

  12. Anchor-based English-Chinese Bilingual Chunk Alignment Model

    Institute of Scientific and Technical Information of China (English)

    WU We-lin; CHENG Chang-sheng; XU Liang-xian; LU Ru-zhan

    2005-01-01

    Chunk alignment for the bilingual corpus is the base of Example-based Machine Translation. An anchor-based English-Chinese bilingual chunk alignment model and the corresponding algorithm of alignment are presented in this paper. It can effectively overcome the sparse data problem due to the limited size of the bilingual corpus. In this model, the chunk segmentation disambiguation is delayed to the alignment process, and hence the accuracy of chunk segmentation is improved. The experimental results demonstrate the feasibility and viability of this model.

  13. Accuracy of structure-based sequence alignment of automatic methods

    Directory of Open Access Journals (Sweden)

    Lee Byungkook

    2007-09-01

    similarity is low, structure-based methods produce better sequence alignments than by using sequence similarities alone. However, current structure-based methods still mis-align 11–19% of the conserved core residues when compared to the human-curated CDD alignments. The alignment quality of each program depends on the protein structural type and similarity, with DaliLite showing the most agreement with CDD on average.

  14. An Ant-Based Model for Multiple Sequence Alignment

    CERN Document Server

    Guinand, Frédéric

    2008-01-01

    Multiple sequence alignment is a key process in today's biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing some improbable evaluation functions. Our approach for addressing multiple sequence alignment focuses on the building of structures in a new graph model: the factor graph model. This model relies on block-based formulation of the original problem, formulation that seems to be one of the most suitable ways for capturing evolutionary aspects of alignment. The structures are implicitly built by a colony of ants laying down pheromones in the factor graphs, according to relations between blocks belonging to the different sequences.

  15. Research on SINS Alignment Algorithm Based on FIR Filters

    Institute of Scientific and Technical Information of China (English)

    LIAN Jun-xiang; HU De-wen; WU Yuan-xin; HU Xiao-ping

    2007-01-01

    An inertial frame based alignment (IFBA) method is presented, especially for the applications on a rocking platform, e.g., marine applications. Defining the initial body frame as the inertial frame, the IFBA method achieves the alignment by virtue of a cascade of low-pass FIR filters, which attenuate the disturbing acceleration and maintain the gravity vector. The aligning time rests with the orders of the FIR filter group, and the method is suitable for large initial misali gnment case. An alignment scheme comprising a coarse phase by the IFBA method an d a fine phase by a Kalman filter is presented. Both vehicle-based and ship-based alignment experiments were carried out. The results show that the proposed scheme converges much faster than the traditional method at no cost of precision and also works well under any large initial misalignment.

  16. Chunk Alignment for Corpus-Based Machine Translation

    Science.gov (United States)

    Kim, Jae Dong

    2011-01-01

    Since sub-sentential alignment is critically important to the translation quality of an Example-Based Machine Translation (EBMT) system, which operates by finding and combining phrase-level matches against the training examples, we developed a new alignment algorithm for the purpose of improving the EBMT system's performance. This new…

  17. Liquid-crystal anchoring transitions on aligning substrates processed by a plasma beam.

    Science.gov (United States)

    Yaroshchuk, Oleg V; Kiselev, Alexei D; Kravchuk, Ruslan M

    2008-03-01

    We have studied a sequence of anchoring transitions observed in nematic liquid crystals (NLCs) sandwiched between hydrophobic polyimide substrates treated with a plasma beam. There is a pronounced continuous transition from a homeotropic to a slightly tilted (nearly planar) alignment with the easy axis parallel to the incidence plane of the plasma beam (the zenithal transition) which takes place as the exposure dose increases. In NLCs with positive dielectric anisotropy, a further increase in the exposure dose results in in-plane reorientation of the easy axis by 90 degrees (the azimuthal transition). This transition occurs through the twofold degenerate alignment characteristic of second-order anchoring transitions. In contrast to the critical behavior of anchoring, the contact angle of the NLC and water on the treated substrates declines monotonically with increasing exposure dose. It follows that the surface concentration of hydrophobic chains decreases continuously. The anchoring transitions under consideration are qualitatively interpreted by using a simple phenomenological model of competing easy axes which is studied by analyzing anchoring diagrams of generalized polar and nonpolar anchoring models.

  18. Experimental study of new laser-based alignment system at the KEK B-factory injector linear accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Suwada, T.; Satoh, M.; Kadokura, E. [Accelerator Laboratory, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki 305-0801 (Japan)

    2010-12-15

    A new laser-based alignment system for the precise alignment of accelerator components along an ideal straight line at the KEK B-factory injector linear accelerator (linac) is under development. This system is strongly required in the next generation of B-factories for the stable acceleration of high-brightness electron and positron beams with high bunch charges and also for maintaining the stability of injection beams with high quality. A new laser optics for the generation of a so-called Airy beam has been developed for the laser-based alignment system. The laser propagation characteristics both in vacuum and at atmospheric pressure have been systematically investigated in an 82-m-long straight section of the injector linac. The laser-based alignment measurements based on the new laser optics have been carried out with a measurement resolution of {+-}0.1 mm level by using an existing laser detection electronics. The horizontal and vertical displacements from a reference laser line measured using this system are in good agreement with those measured using a standard telescope-based optical alignment technique. In this report, we describe the experimental study in detail along with the basic designs and the recent developments in the new laser-based alignment system.

  19. Squid based beam current meter

    Energy Technology Data Exchange (ETDEWEB)

    Kuchnir, M.

    1983-11-25

    A SQUID based beam current meter has the capability of measuring the current of a beam with as little as 30 x 155 antiprotons (with a signal to noise ratio of 2). If low noise dc current is used to cancel most of the beam or an up-down counter is used to count auto-resets this sensitivity will be available at any time in the acumulation process. This current meter will therefore be a unique diagnostic tool for optimizing the performance of several Tev I components. Besides requiring liquid helium it seems that its only drawback is not to follow with the above sensitivity a sudden beam change larger than 16 ..mu..A, something that could be done using a second one in a less sensitive configuration.

  20. Constructive Alignment for Teaching Model-Based Design for Concurrency

    DEFF Research Database (Denmark)

    Brabrand, Claus

    2007-01-01

    "How can we make sure our students learn what we want them to?" is the number one question in teaching. This paper is intended to provide the reader with: i) a general answer to this question based on the theory of constructive alignment by John Biggs; ii) relevant insights for bringing this answ...... from theory to practice; and iii) specific insights and experiences from using constructive alignment in teaching model-based design for concurrency (as a case study in implementing alignment)......."How can we make sure our students learn what we want them to?" is the number one question in teaching. This paper is intended to provide the reader with: i) a general answer to this question based on the theory of constructive alignment by John Biggs; ii) relevant insights for bringing this answer...

  1. Search for Anisotropic Light Propagation as a Function of Laser Beam Alignment Relative to the Earth's Velocity Vector

    Directory of Open Access Journals (Sweden)

    Navia C. E.

    2007-01-01

    Full Text Available A laser diffraction experiment was conducted to study light propagation in air. The experiment is easy to reproduce and it is based on simple optical principles. Two optical sensors (segmented photo-diodes are used for measuring the position of diffracted light spots with a precision better than 0.1 μ m. The goal is to look for signals of anisotropic light propagation as function of the laser beam alignment to the Earth’s motion (solar barycenter motion obtained by COBE. Two raster search techniques have been used. First, a laser beam fixed in the laboratory frame scans in space due to Earth’s rotation. Second, a laser beam mounted on a turntable system scans actively in space by turning the table. The results obtained with both methods show that the course of light rays are affected by the motion of the Earth, and a predominant first order quantity with a Δ c/c = − β (1 + 2 a cos θ signature with ˉ a = − 0.393 ± 0.032 describes well the experimental results. This result differs in amount of 21% from the Special Relativity Theory prediction and that supplies the value of a = − 1 2 (isotropy.

  2. Cherenkov light-based beam profiling for ultrarelativistic electron beams

    Energy Technology Data Exchange (ETDEWEB)

    Adli, E., E-mail: Erik.Adli@fys.uio.no [Department of Physics, University of Oslo, N-0316 Oslo (Norway); SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); Gessner, S.J.; Corde, S.; Hogan, M.J. [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); Bjerke, H.H. [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 (United States); Department of Physics, Norwegian University of Science and Technology, N-7491 Trondheim (Norway)

    2015-05-21

    We describe a beam profile monitor design based on Cherenkov light emitted from a charged particle beam in an air gap. The main components of the profile monitor are silicon wafers used to reflect Cherenkov light onto a camera lens system. The design allows for measuring large beam sizes, with large photon yield per beam charge and excellent signal linearity with beam charge. The profile monitor signal is independent of the particle energy for ultrarelativistic particles. Different design and parameter considerations are discussed. A Cherenkov light-based profile monitor has been installed at the FACET User Facility at SLAC. We report on the measured performance of this profile monitor.

  3. RNA-RNA interaction prediction based on multiple sequence alignments

    CERN Document Server

    Li, Andrew X; Qin, Jing; Reidys, Christian M

    2010-01-01

    Recently, $O(N^6)$ time and $O(N^4)$ space dynamic programming algorithms have become available that compute the partition function of RNA-RNA interaction complexes for pairs of RNA sequences. These algorithms and the biological requirement of more reliable interactions motivate to utilize the additional information contained in multiple sequence alignments and to generalize the above framework to the partition function and base pairing probabilities for multiple sequence alignments.

  4. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.

    Science.gov (United States)

    Terashi, Genki; Takeda-Shitaka, Mayuko

    2015-01-01

    Proteins are flexible, and this flexibility has an essential functional role. Flexibility can be observed in loop regions, rearrangements between secondary structure elements, and conformational changes between entire domains. However, most protein structure alignment methods treat protein structures as rigid bodies. Thus, these methods fail to identify the equivalences of residue pairs in regions with flexibility. In this study, we considered that the evolutionary relationship between proteins corresponds directly to the residue-residue physical contacts rather than the three-dimensional (3D) coordinates of proteins. Thus, we developed a new protein structure alignment method, contact area-based alignment (CAB-align), which uses the residue-residue contact area to identify regions of similarity. The main purpose of CAB-align is to identify homologous relationships at the residue level between related protein structures. The CAB-align procedure comprises two main steps: First, a rigid-body alignment method based on local and global 3D structure superposition is employed to generate a sufficient number of initial alignments. Then, iterative dynamic programming is executed to find the optimal alignment. We evaluated the performance and advantages of CAB-align based on four main points: (1) agreement with the gold standard alignment, (2) alignment quality based on an evolutionary relationship without 3D coordinate superposition, (3) consistency of the multiple alignments, and (4) classification agreement with the gold standard classification. Comparisons of CAB-align with other state-of-the-art protein structure alignment methods (TM-align, FATCAT, and DaliLite) using our benchmark dataset showed that CAB-align performed robustly in obtaining high-quality alignments and generating consistent multiple alignments with high coverage and accuracy rates, and it performed extremely well when discriminating between homologous and nonhomologous pairs of proteins in both

  5. Evaluation of Laser Based Alignment Algorithms Under Additive Random and Diffraction Noise

    Energy Technology Data Exchange (ETDEWEB)

    McClay, W A; Awwal, A; Wilhelmsen, K; Ferguson, W; McGee, M; Miller, M

    2004-09-30

    The purpose of the automatic alignment algorithm at the National Ignition Facility (NIF) is to determine the position of a laser beam based on the position of beam features from video images. The position information obtained is used to command motors and attenuators to adjust the beam lines to the desired position, which facilitates the alignment of all 192 beams. One of the goals of the algorithm development effort is to ascertain the performance, reliability, and uncertainty of the position measurement. This paper describes a method of evaluating the performance of algorithms using Monte Carlo simulation. In particular we show the application of this technique to the LM1{_}LM3 algorithm, which determines the position of a series of two beam light sources. The performance of the algorithm was evaluated for an ensemble of over 900 simulated images with varying image intensities and noise counts, as well as varying diffraction noise amplitude and frequency. The performance of the algorithm on the image data set had a tolerance well beneath the 0.5-pixel system requirement.

  6. Detailed protein sequence alignment based on Spectral Similarity Score (SSS

    Directory of Open Access Journals (Sweden)

    Thomas Dina

    2005-04-01

    Full Text Available Abstract Background The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine alignment and similarity of primary protein sequences. However, character based similarity cannot provide insight into the structural aspects of a protein. We present a method based on spectral similarity to compare subsequences of amino acids that behave similarly but are not aligned well by considering amino acids as mere characters. This approach finds a similarity score between sequences based on any given attribute, like hydrophobicity of amino acids, on the basis of spectral information after partial conversion to the frequency domain. Results Distance matrices of various branches of the human kinome, that is the full complement of human kinases, were developed that matched the phylogenetic tree of the human kinome establishing the efficacy of the global alignment of the algorithm. PKCd and PKCe kinases share close biological properties and structural similarities but do not give high scores with character based alignments. Detailed comparison established close similarities between subsequences that do not have any significant character identity. We compared their known 3D structures to establish that the algorithm is able to pick subsequences that are not considered similar by character based matching algorithms but share structural similarities. Similarly many subsequences with low character identity were picked between xyna-theau and xyna-clotm F/10 xylanases. Comparison of 3D structures of the subsequences confirmed the claim of similarity in structure. Conclusion An algorithm is developed which is inspired by successful application of spectral similarity applied to music sequences. The method captures subsequences that do not align by traditional character based alignment tools but give rise to similar secondary and tertiary structures. The Spectral

  7. Short note on undulator alignments and beam tolerances for the APS FEL at 220 MeV

    Energy Technology Data Exchange (ETDEWEB)

    Dejus, R.J.; Vasserman, I.B.

    1999-10-08

    The APS FEL consists of a series of undulators that must be carefully aligned for optimum gain and high spectral output. In order to get a better understanding of acceptable tolerance levels for undulator alignments and for the electron beam, the authors have performed computer calculations to simulate misalignments of one undulator (undulator number 2) with respect to adjacent undulators and to check the sensitivity to unmatched beam parameters ({alpha} and {beta}) at the entrance and to a noncentered incident beam x{sub o}, x{sub o}{prime}, y{sub o}, y{sub o}{prime}. They have not simulated horizontal misalignments because the undulators focus only in the vertical direction and horizontal alignments are therefore much more relaxed than vertical alignments. The exact placement and strength of the quadrupoles in the breaks need also to be addressed in follow up studies and are not presented here. Further, inherent undulator magnetic field errors have not been investigated here and will also be the subject for another study. Note, the tolerances listed in this note may be used for guidance only and will need to be updated when they have updated beam parameters.

  8. Dynamic Beam Based Calibration of Beam Position Monitors

    CERN Document Server

    Dehning, Bernd; Galbraith, Peter; Mugnai, G; Placidi, Massimo; Sonnemann, F; Tecker, F A; Wenninger, J

    1998-01-01

    The degree of spin polarization at LEP is strongly dependent on the knowledge of the vertical orbit. Quadrupole magnet alignment and beam position monitor (BPM) offsets are the main source of the orbi t uncertainty. The error of the orbit monitor readings can be largely reduced by calibrating the monitor relative to the adjacent quadrupole. At LEP, 16 BPM offsets can be determined in parallel durin g 40 minutes. The error of the measure offset is about 30mm. During the LEP run 1997, more than 500 measurements were made and used for the optimisation of polarization. The method of dynamic beam bas ed calibration will be explained and the results will be shown.

  9. Image-based temporal alignment of echocardiographic sequences

    Science.gov (United States)

    Danudibroto, Adriyana; Bersvendsen, Jørn; Mirea, Oana; Gerard, Olivier; D'hooge, Jan; Samset, Eigil

    2016-04-01

    Temporal alignment of echocardiographic sequences enables fair comparisons of multiple cardiac sequences by showing corresponding frames at given time points in the cardiac cycle. It is also essential for spatial registration of echo volumes where several acquisitions are combined for enhancement of image quality or forming larger field of view. In this study, three different image-based temporal alignment methods were investigated. First, a method based on dynamic time warping (DTW). Second, a spline-based method that optimized the similarity between temporal characteristic curves of the cardiac cycle using 1D cubic B-spline interpolation. Third, a method based on the spline-based method with piecewise modification. These methods were tested on in-vivo data sets of 19 echo sequences. For each sequence, the mitral valve opening (MVO) time was manually annotated. The results showed that the average MVO timing error for all methods are well under the time resolution of the sequences.

  10. Shocklets, SLAMS, and Field-Aligned Ion Beams in the Terrestrial Foreshock

    Science.gov (United States)

    Wilson, L. B.; Koval, A.; Sibeck, D. G.; Szabo, A.; Cattell, C. A.; Kasper, J. C.; Maruca, B. A.; Pulupa, M.; Salem, C. S.; Wilber, M.

    2012-01-01

    We present Wind spacecraft observations of ion distributions showing field- aligned beams (FABs) and large-amplitude magnetic fluctuations composed of a series of shocklets and short large-amplitude magnetic structures (SLAMS). The FABs are found to have T(sub k) approx 80-850 eV, V(sub b)/V(sub sw) approx 1.3-2.4, T(sub perpendicular,b)/T(sub paralell,b) approx 1-8, and n(sub b)/n(sub o) approx 0.2-11%. Saturation amplitudes for ion/ion resonant and non-resonant instabilities are too small to explain the observed SLAMS amplitudes. We show two examples where groups of SLAMS can act like a local quasi-perpendicular shock reflecting ions to produce the FABs, a scenario distinct from the more-common production at the quasi-perpendicular bow shock. The SLAMS exhibit a foot-like magnetic enhancement with a leading magnetosonic whistler train, consistent with previous observations. Strong ion and electron heating are observed within the series of shocklets and SLAMS with temperatures increasing by factors approx > 5 and approx >3, respectively. Both the core and halo electron components show strong perpendicular heating inside the feature.

  11. Shocklets, SLAMS, and field-aligned ion beams in the terrestrial foreshock

    CERN Document Server

    Wilson, L B; Sibeck, D G; Szabo, A; Cattell, C A; Kasper, J C; Maruca, B A; Pulupa, M; Salem, C S; Wilber, M

    2012-01-01

    We present Wind spacecraft observations of ion distributions showing field-aligned beams (FABs) and large-amplitude magnetic fluctuations composed of a series of shocklets and short large-amplitude magnetic structures (SLAMS). We show that the SLAMS are acting like a local quasi-perpendicular shock reflecting ions to produce the FABs. Previous FAB observations reported the source as the quasi-perpendicular bow shock. The SLAMS exhibit a foot-like magnetic enhancement with a leading magnetosonic whistler train, consistent with previous observations. The FABs are found to have T_b ~ 80-850 eV, V_b/V_sw ~ 1-2, T_{b,perp}/T{b,para} ~ 1-10, and n_b/n_i ~ 0.2-14%. Strong ion and electron heating are observed within the series of shocklets and SLAMS increasing by factors \\geq 5 and \\geq 3, respectively. Both the core and halo electron components show strong perpendicular heating inside the feature.

  12. Propagation and stability characteristics of a 500-m-long laser-based fiducial line for high-precision alignment of long-distance linear accelerators.

    Science.gov (United States)

    Suwada, Tsuyoshi; Satoh, Masanori; Telada, Souichi; Minoshima, Kaoru

    2013-09-01

    A laser-based alignment system with a He-Ne laser has been newly developed in order to precisely align accelerator units at the KEKB injector linac. The laser beam was first implemented as a 500-m-long fiducial straight line for alignment measurements. We experimentally investigated the propagation and stability characteristics of the laser beam passing through laser pipes in vacuum. The pointing stability at the last fiducial point was successfully obtained with the transverse displacements of ±40 μm level in one standard deviation by applying a feedback control. This pointing stability corresponds to an angle of ±0.08 μrad. This report contains a detailed description of the experimental investigation for the propagation and stability characteristics of the laser beam in the laser-based alignment system for long-distance linear accelerators.

  13. Business Alignment: Measurement-Based Alignment of Software Strategies and Business Goals

    Science.gov (United States)

    Münch, Jürgen; Heidrich, Jens; Mandić, Vladimir

    Most of today’s products and services are software-based. Organizations that develop software want to maintain and improve their competitiveness by controlling software-related risks. To do this, they need to align their business goals with software development strategies and translate them into quantitative project management. There is also an increasing need to justify cost and resources for software and system development and other IT services by demonstrating their impact on an organization’s higher-level goals. For both, linking business goals and software-related efforts in an organization is necessary. However, this is a challenging task, and there is a lack of methods addressing this gap.

  14. RM-structure alignment based statistical machine translation model

    Institute of Scientific and Technical Information of China (English)

    Sun Jiadong; Zhao Tiejun

    2008-01-01

    A novel model based on structure alignments is proposed for statistical machine translation in this paper.Meta-structure and sequence of meta-structure for a parse tree are defined.During the translation process, a parse tree is decomposed to deal with the structure divergence and the alignments can be constructed at different levels of recombination of meta-structure (RM).This method can perform the structure mapping across the sub-tree structure between languages.As a result, we get not only the translation for the target language, but sequence of meta-structure of its parse tree at the same time.Experiments show that the model in the framework of log-linear model has better generative ability and significantly outperforms Pharaoh, a phrase-based system.

  15. Development and Validation of a Multipoint Based Laser Alignment System for CLIC

    CERN Document Server

    Stern, G; Lackner, F; Mainaud-Durand, H; Piedigrossi, D; Sandomierski, J; Sosin, M; Geiger, A; Guillaume, S

    2013-01-01

    Alignment is one of the major challenges within CLIC study, since all accelerator components have to be aligned with accuracy up to 10 μm over sliding windows of 200 m. So far, the straight line reference concept has been based on stretched wires coupled with Wire Positioning Sensors. This concept should be validated through inter-comparison with an alternative solution. This paper proposes an alternative concept where laser beam acts as straight line reference and optical shutters coupled with cameras visualise the beam. The principle was first validated by a series of tests using low-cost components. Yet, in order to further decrease measurement uncertainty in this validation step, a high-precision automatised micrometric table and reference targets have been added to the setup. The paper presents the results obtained with this new equipment, in terms of measurement precision. In addition, the paper gives an overview of first tests done at long distance (up to 53 m), having emphasis on beam divergence

  16. Robust Non-Frontal Face Alignment with Edge Based Texture

    Institute of Scientific and Technical Information of China (English)

    Hua Li; Shui-Cheng Yan; Li-Zhong Peng

    2005-01-01

    This paper proposes a new algorithm, called Edge-based Texture Driven Shape Model (E-TDSM), for nonfrontal face alignment task. First, the texture is defined as the un-warped edge image contained in the shape rectangle; then,a Bayesian network is constructed to describe the relationship between the shape and texture models; finally, ExpectationMaximization (EM) approach is utilized to infer the optimal texture and position parameters from the observed shape and texture information. Compared with the traditional shape localization algorithms, E-TDSM has the following advantages:1) the un-warped edge-based texture can better predict the shape and is more robust to the illumination and expression variation than the conventional warped gray-level based texture; 2) the presented Bayesian network indicates the logic structure of the face alignment task; and 3) the mutually enhanced shape and texture observations are integrated to infer the optimal parameters of the proposed Bayesian network using EM approach. The extensive experiments on non-frontal face alignment task demonstrate the effectiveness and robustness of the proposed E-TDSM algorithm.

  17. Developmental long trace profiler using optimally aligned mirror based pentaprism

    Energy Technology Data Exchange (ETDEWEB)

    Barber, Samuel K; Morrison, Gregory Y; Yashchuk, Valeriy V; Gubarev, Mikhail V; Geckeler, Ralf D.; Buchheim, Jana; Siewert, Frank; Zeschke, Thomas

    2010-12-20

    A low-budget surface slope measuring instrument, the Developmental Long Trace Profiler (DLTP), was recently brought into operation at the Advanced Light Source Optical Metrology Laboratory. The instrument is based on a precisely calibrated autocollimator and a movable pentaprism. The capability of the DLTP to achieve sub-microradian surface slope metrology has been verified via cross-comparison measurements with other high-performance slope measuring instruments when measuring the same high-quality test optics. In the present work, a further improvement of the DLTP is achieved by replacing the existing bulk pentaprism with a specially designed mirror based pentaprism. A mirror based pentaprism offers the possibility to eliminate systematic errors introduced by inhomogeneity of the optical material and fabrication imperfections of a bulk pentaprism. We provide the details of the mirror based pentaprism design and describe an original experimental procedure for precision mutual alignment of the mirrors. The algorithm of the alignment procedure and its efficiency are verified with rigorous ray tracing simulations. Results of measurements of a spherically curved test mirror and a flat test mirror using the original bulk pentaprism are compared with measurements using the new mirror based pentaprism, demonstrating the improved performance.

  18. Developmental long trace profiler using optimally aligned mirror based pentaprism

    Energy Technology Data Exchange (ETDEWEB)

    Barber, Samuel K; Morrison, Gregory Y.; Yashchuk, Valeriy V.; Gubarev, Mikhail V.; Geckeler, Ralf D.; Buchheim, Jana; Siewert, Frank; Zeschke, Thomas

    2010-07-21

    A low-budget surface slope measuring instrument, the Developmental Long Trace Profiler (DLTP), was recently brought into operation at the Advanced Light Source Optical Metrology Laboratory [Nucl. Instr. and Meth. A 616, 212-223 (2010)]. The instrument is based on a precisely calibrated autocollimator and a movable pentaprism. The capability of the DLTP to achieve sub-microradian surface slope metrology has been verified via cross-comparison measurements with other high-performance slope measuring instruments when measuring the same high-quality test optics. In the present work, a further improvement of the DLTP is achieved by replacing the existing bulk pentaprism with a specially designed mirror based pentaprism. A mirror based pentaprism offers the possibility to eliminate systematic errors introduced by inhomogeneity of the optical material and fabrication imperfections of a bulk pentaprism. We provide the details of the mirror based pentaprism design and describe an original experimental procedure for precision mutual alignment of the mirrors. The algorithm of the alignment procedure and its efficiency are verified with rigorous ray tracing simulations. Results of measurements of a spherically curved test mirror and a flat test mirror using the original bulk pentaprism are compared with measurements using the new mirror based pentaprism, demonstrating the improved performance.

  19. Alignment of optical system components using an ADM beam through a null assembly

    Science.gov (United States)

    Hayden, Joseph E. (Inventor); Olczak, Eugene G. (Inventor)

    2010-01-01

    A system for testing an optical surface includes a rangefinder configured to emit a light beam and a null assembly located between the rangefinder and the optical surface. The null assembly is configured to receive and to reflect the emitted light beam toward the optical surface. The light beam reflected from the null assembly is further reflected back from the optical surface toward the null assembly as a return light beam. The rangefinder is configured to measure a distance to the optical surface using the return light beam.

  20. The SPL-based Neutrino Super Beam

    CERN Document Server

    Baussan, E; Bobeth, C; Bouquerel, E; Caretta, O; Cupial, P; Davenne, T; Densham, C; Dracos, M; Fitton, M; Gaudiot, G; Kozien, M; Lacny, L; Lepers, B; Longhin, A; Loveridge, P; Osswald, F; Poussot, P; Rooney, M; Skoczen, B; Szybinski, B; Ustrzycka, A; Vassilopoulos, N; Wilcox, D; Wroblewski, A; Wurtz, J; Zeter, V; Zito, M

    2012-01-01

    The EUROnu Super Beam work package has studied a neutrino beam based on SPL at CERN and aimed at MEMPHYS, a large water Cherenkov detector, proposed for the Laboratoire Souterrain de Modane (Fr\\'ejus tunnel, France), with a baseline of 130 km. The aim of this proposed experiment is to study the CP violation in the neutrino sector. In the study reported here, we have developed the conceptual design of the neutrino beam, especially the target and the magnetic focusing device. Indeed, this beam present several unprecedented challenges, like the high primary proton beam power (4 MW), the high repetition rate (50 Hz) and the low energy of the protons (4.5 GeV). The design is completed by a study of all the main component of the system, starting from the transport system to guide the beam to the target up to the beam dump.

  1. Structure based alignment and clustering of proteins (STRALCP)

    Science.gov (United States)

    Zemla, Adam T.; Zhou, Carol E.; Smith, Jason R.; Lam, Marisa W.

    2013-06-18

    Disclosed are computational methods of clustering a set of protein structures based on local and pair-wise global similarity values. Pair-wise local and global similarity values are generated based on pair-wise structural alignments for each protein in the set of protein structures. Initially, the protein structures are clustered based on pair-wise local similarity values. The protein structures are then clustered based on pair-wise global similarity values. For each given cluster both a representative structure and spans of conserved residues are identified. The representative protein structure is used to assign newly-solved protein structures to a group. The spans are used to characterize conservation and assign a "structural footprint" to the cluster.

  2. Alignment analysis of urban railways based on passenger travel demand

    DEFF Research Database (Denmark)

    Andersen, Jonas Lohmann Elkjær; Landex, Alex

    2010-01-01

    Planning of urban railways like Metro and especially Light Rail Transit often result in multiple alignment alternatives from where it can be difficult to select the best one. Travel demand is a good foundation for evaluating a railway alignment for its ability to attract passengers. Therefore...... and can be applied as decision support in different stages of the urban railway alignment planning....

  3. Moving State Marine SINS Initial Alignment Based on High Degree CKF

    Directory of Open Access Journals (Sweden)

    Yong-Gang Zhang

    2014-01-01

    Full Text Available A new moving state marine initial alignment method of strap-down inertial navigation system (SINS is proposed based on high-degree cubature Kalman filter (CKF, which can capture higher order Taylor expansion terms of nonlinear alignment model than the existing third-degree CKF, unscented Kalman filter and central difference Kalman filter, and improve the accuracy of initial alignment under large heading misalignment angle condition. Simulation results show the efficiency and advantage of the proposed initial alignment method as compared with existing initial alignment methods for the moving state SINS initial alignment with large heading misalignment angle.

  4. Vortex-based line beam optical tweezers

    Science.gov (United States)

    Cheng, Shubo; Tao, Shaohua

    2016-10-01

    A vortex-based line beam, which has a straight-line shape of intensity and possesses phase gradient along the line trajectory is developed and applied for optical manipulation in this paper. The intensity and phase distributions of the beam in the imaging plane of the Fourier transform are analytically studied. Simulation results show that the length of the line and phase gradient possessed by a vortex-based line beam are dependent on the topological charge and the azimuthal proportional constant. A superposition of multiple phase-only holograms with elliptical azimuthal phases can be used to generate an array of vortex-based line beams. Optical trapping with the vortex-based line beams has been implemented. Furthermore, the automatic transportation of microparticles along the line trajectory perpendicular to the optical axis is realized with an array of the beams. The generation method for the vortex-based line beam is simple. The beam would have potential applications in fields such as optical trapping, laser machining, and so on.

  5. A LabVIEW based user-friendly nano-CT image alignment and 3D reconstruction platform

    CERN Document Server

    Wang, Shenghao; Wang, Zhili; Gao, Kun; Wu, Zhao; Zhu, Peiping; Wu, Ziyu

    2014-01-01

    X-ray nanometer computed tomography (nano-CT) offers applications and opportunities in many scientific researches and industrial areas. Here we present a user-friendly and fast LabVIEW based package running, after acquisition of the raw projection images, a procedure to obtain the inner structure of the sample under analysis. At first, a reliable image alignment procedure fixes possible misalignments among image series due to mechanical errors, thermal expansion and other external contributions, then a novel fast parallel beam 3D reconstruction performs the tomographic reconstruction. The remarkable improved reconstruction after the image calibration confirms the fundamental role of the image alignment procedure. It minimizes blurring and additional streaking artifacts present in a reconstructed slice that cause loss of information and faked structures in the observed material. The nano-CT image alignment and 3D reconstruction LabVIEW package significantly reducing the data process, makes faster and easier th...

  6. Vertically Aligned Carbon Nanofiber based Biosensor Platform for Glucose Sensor

    Energy Technology Data Exchange (ETDEWEB)

    Al Mamun, Khandaker A.; Tulip, Fahmida S.; MacArthur, Kimberly; McFarlane, Nicole; Islam, Syed K.; Hensley, Dale

    2014-03-01

    Vertically aligned carbon nanofibers (VACNFs) have recently become an important tool for biosensor design. Carbon nanofibers (CNF) have excellent conductive and structural properties with many irregularities and defect sites in addition to exposed carboxyl groups throughout their surfaces. These properties allow a better immobilization matrix compared to carbon nanotubes and offer better resolution when compared with the FET-based biosensors. VACNFs can be deterministically grown on silicon substrates allowing optimization of the structures for various biosensor applications. Two VACNF electrode architectures have been employed in this study and a comparison of their performances has been made in terms of sensitivity, sensing limitations, dynamic range, and response time. The usage of VACNF platform as a glucose sensor has been verified in this study by selecting an optimum architecture based on the VACNF forest density. Read More: http://www.worldscientific.com/doi/abs/10.1142/S0129156414500062

  7. A new accelerator alignment concept using laser trackers

    Energy Technology Data Exchange (ETDEWEB)

    Friedsam, H.

    1994-07-01

    This paper outlines the basic principle of the laser tracker and the new and simplified alignment concept for the APS based on the use of these laser trackers. These instruments not only provide the necessary accuracy for positioning of beam components but are also reducing the time and manpower requirements for the alignment of beam elements. The presented alignment concept will be especially valuable when considering the alignment of small scale accelerators.

  8. NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

    DEFF Research Database (Denmark)

    Nielsen, Morten; Lund, Ole

    2009-01-01

    through presentation of extracellularly derived peptides to helper T cells. Identification of which peptides will bind a given MHC molecule is thus of great importance for the understanding of host-pathogen interactions, and large efforts have been placed in developing algorithms capable of predicting...... this binding event. RESULTS: Here, we present a novel artificial neural network-based method, NN-align that allows for simultaneous identification of the MHC class II binding core and binding affinity. NN-align is trained using a novel training algorithm that allows for correction of bias in the training data...... class II alleles, and is demonstrated to outperform other state-of-the-art MHC class II prediction methods. CONCLUSION: The NN-align method is competitive with the state-of-the-art MHC class II peptide binding prediction algorithms. The method is publicly available at http...

  9. AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences

    Directory of Open Access Journals (Sweden)

    Claros M Gonzalo

    2010-06-01

    Full Text Available Abstract Background Multiple sequence alignments are used to study gene or protein function, phylogenetic relations, genome evolution hypotheses and even gene polymorphisms. Virtually without exception, all available tools focus on conserved segments or residues. Small divergent regions, however, are biologically important for specific quantitative polymerase chain reaction, genotyping, molecular markers and preparation of specific antibodies, and yet have received little attention. As a consequence, they must be selected empirically by the researcher. AlignMiner has been developed to fill this gap in bioinformatic analyses. Results AlignMiner is a Web-based application for detection of conserved and divergent regions in alignments of conserved sequences, focusing particularly on divergence. It accepts alignments (protein or nucleic acid obtained using any of a variety of algorithms, which does not appear to have a significant impact on the final results. AlignMiner uses different scoring methods for assessing conserved/divergent regions, Entropy being the method that provides the highest number of regions with the greatest length, and Weighted being the most restrictive. Conserved/divergent regions can be generated either with respect to the consensus sequence or to one master sequence. The resulting data are presented in a graphical interface developed in AJAX, which provides remarkable user interaction capabilities. Users do not need to wait until execution is complete and can.even inspect their results on a different computer. Data can be downloaded onto a user disk, in standard formats. In silico and experimental proof-of-concept cases have shown that AlignMiner can be successfully used to designing specific polymerase chain reaction primers as well as potential epitopes for antibodies. Primer design is assisted by a module that deploys several oligonucleotide parameters for designing primers "on the fly". Conclusions AlignMiner can be used

  10. Similarity Measurement of Web Sessions Based on Sequence Alignment

    Institute of Scientific and Technical Information of China (English)

    LI Chaofeng; LU Yansheng

    2007-01-01

    The task of clustering Web sessions is to group Web sessions based on similarity and consists of maximizing the intra-group similarity while minimizing the inter-group similarity.The first and foremost question needed to be considered in clustering Web sessions is how to measure the similarity between Web sessions. However, there are many shortcomings in traditional measurements. This paper introduces a new method for measuring similarities between Web pages that takes into account not only the URL but also the viewing time of the visited Web page. Then we give a new method to measure the similarity of Web sessions using sequence alignment and the similarity of Web page access in detail.Experiments have proved that our method is valid and efficient.

  11. Space Alignment Based on Regularized Inversion Precoding in Cognitive Transmission

    Directory of Open Access Journals (Sweden)

    R. Yao

    2015-09-01

    Full Text Available For a two-tier Multiple-Input Multiple-Output (MIMO cognitive network with common receiver, the precoding matrix has a compact relationship with the capacity performance in the unlicensed secondary system. To increase the capacity of secondary system, an improved precoder based on the idea of regularized inversion for secondary transmitter is proposed. An iterative space alignment algorithm is also presented to ensure the Quality of Service (QoS for primary system. The simulations reveal that, on the premise of achieving QoS for primary system, our proposed algorithm can get larger capacity in secondary system at low Signal-to-Noise Ratio (SNR, which proves the effectiveness of the algorithm.

  12. Ontology Alignment Repair through Modularization and Confidence-Based Heuristics.

    Directory of Open Access Journals (Sweden)

    Emanuel Santos

    Full Text Available Ontology Matching aims at identifying a set of semantic correspondences, called an alignment, between related ontologies. In recent years, there has been a growing interest in efficient and effective matching methods for large ontologies. However, alignments produced for large ontologies are often logically incoherent. It was only recently that the use of repair techniques to improve the coherence of ontology alignments began to be explored. This paper presents a novel modularization technique for ontology alignment repair which extracts fragments of the input ontologies that only contain the necessary classes and relations to resolve all detectable incoherences. The paper presents also an alignment repair algorithm that uses a global repair strategy to minimize both the degree of incoherence and the number of mappings removed from the alignment, while overcoming the scalability problem by employing the proposed modularization technique. Our evaluation shows that our modularization technique produces significantly small fragments of the ontologies and that our repair algorithm produces more complete alignments than other current alignment repair systems, while obtaining an equivalent degree of incoherence. Additionally, we also present a variant of our repair algorithm that makes use of the confidence values of the mappings to improve alignment repair. Our repair algorithm was implemented as part of AgreementMakerLight, a free and open-source ontology matching system.

  13. A fast and accurate initial alignment method for strapdown inertial navigation system on stationary base

    Institute of Scientific and Technical Information of China (English)

    Xinlong WANG; Gongxun SHEN

    2005-01-01

    In this work,a fast and accurate stationary alignment method for strapdown inertial navigation system (SINS) is proposed.It has been demonstrated that the stationary alignment of SINS can be improved by employing the multiposition technique,but the alignment time of the azimuth error is relatively longer.Over here,the two-position alignment principle is presented.On the basis of this SINS error model,a fast estimation algorithm of the azimuth error for the initial alignment of SINS on stationary base is derived fully from the horizontal velocity outputs and the output rates,and the novel azimuth error estimation algorithm is used for the two-position alignment.Consequently,the speed and accuracy of the SINS's initial alignment is enhanced greatly.The computer simulation results illustrate the efficiency of this alignment method.

  14. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.

    Science.gov (United States)

    Bahr, A; Thompson, J D; Thierry, J C; Poch, O

    2001-01-01

    BAliBASE is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The database contains high quality, manually constructed multiple sequence alignments together with detailed annotations. The alignments are all based on three-dimensional structural superpositions, with the exception of the transmembrane sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Here we describe version 2.0 of the database, which incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. BAliBASE can be viewed at the web site http://www-igbmc.u-strasbg. fr/BioInfo/BAliBASE2/index.html or can be downloaded from ftp://ftp-igbmc.u-strasbg.fr/pub/BAliBASE2 /.

  15. A rank-based sequence aligner with applications in phylogenetic analysis.

    Directory of Open Access Journals (Sweden)

    Liviu P Dinu

    Full Text Available Recent tools for aligning short DNA reads have been designed to optimize the trade-off between correctness and speed. This paper introduces a method for assigning a set of short DNA reads to a reference genome, under Local Rank Distance (LRD. The rank-based aligner proposed in this work aims to improve correctness over speed. However, some indexing strategies to speed up the aligner are also investigated. The LRD aligner is improved in terms of speed by storing [Formula: see text]-mer positions in a hash table for each read. Another improvement, that produces an approximate LRD aligner, is to consider only the positions in the reference that are likely to represent a good positional match of the read. The proposed aligner is evaluated and compared to other state of the art alignment tools in several experiments. A set of experiments are conducted to determine the precision and the recall of the proposed aligner, in the presence of contaminated reads. In another set of experiments, the proposed aligner is used to find the order, the family, or the species of a new (or unknown organism, given only a set of short Next-Generation Sequencing DNA reads. The empirical results show that the aligner proposed in this work is highly accurate from a biological point of view. Compared to the other evaluated tools, the LRD aligner has the important advantage of being very accurate even for a very low base coverage. Thus, the LRD aligner can be considered as a good alternative to standard alignment tools, especially when the accuracy of the aligner is of high importance. Source code and UNIX binaries of the aligner are freely available for future development and use at http://lrd.herokuapp.com/aligners. The software is implemented in C++ and Java, being supported on UNIX and MS Windows.

  16. The cortex-based alignment approach to TMS coil positioning.

    Science.gov (United States)

    Duecker, Felix; Frost, Martin A; de Graaf, Tom A; Graewe, Britta; Jacobs, Christianne; Goebel, Rainer; Sack, Alexander T

    2014-10-01

    TMS allows noninvasive manipulation of brain activity in healthy participants and patients. The effectiveness of TMS experiments critically depends on precise TMS coil positioning, which is best for most brain areas when a frameless stereotactic system is used to target activation foci based on individual fMRI data. From a purely scientific perspective, individual fMRI-guided TMS is thus the method of choice to ensure optimal TMS efficiency. Yet, from a more practical perspective, such individual functional data are not always available, and therefore alternative TMS coil positioning approaches are often applied, for example, based on functional group data reported in Talairach coordinates. We here propose a novel method for TMS coil positioning that is based on functional group data, yet only requires individual anatomical data. We used cortex-based alignment (CBA) to transform individual anatomical data to an atlas brain that includes probabilistic group maps of two functional regions (FEF and hMT+/V5). Then, these functional group maps were back-transformed to the individual brain anatomy, preserving functional-anatomical correspondence. As a proof of principle, the resulting CBA-based functional targets in individual brain space were compared with individual FEF and hMT+/V5 hotspots as conventionally localized with individual fMRI data and with targets based on Talairach coordinates as commonly done in TMS research in case only individual anatomical data are available. The CBA-based approach significantly improved localization of functional brain areas compared with traditional Talairach-based targeting. Given the widespread availability of CBA schemes and preexisting functional group data, the proposed procedure is easy to implement and at no additional measurement costs. However, the accuracy of individual fMRI-guided TMS remains unparalleled, and the CBA-based approach should only be the method of choice when individual functional data cannot be obtained or

  17. Error Analysis and Compensation of Gyrocompass Alignment for SINS on Moving Base

    Directory of Open Access Journals (Sweden)

    Bo Xu

    2014-01-01

    Full Text Available An improved method of gyrocompass alignment for strap-down inertial navigation system (SINS on moving base assisted with Doppler velocity log (DVL is proposed in this paper. After analyzing the classical gyrocompass alignment principle on static base, implementation of compass alignment on moving base is given in detail. Furthermore, based on analysis of velocity error, latitude error, and acceleration error on moving base, two improvements are introduced to ensure alignment accuracy and speed: (1 the system parameters are redesigned to decrease the acceleration interference and (2 a data repeated calculation algorithm is used in order to shorten the prolonged alignment time caused by changes in parameters. Simulation and test results indicate that the improved method can realize the alignment on moving base quickly and effectively.

  18. Effect of upflowing field-aligned electron beams on the electron cyclotron waves in the auroral magnetosphere

    Indian Academy of Sciences (India)

    Sushil Kumar; S K Singh; A K Gwal

    2007-04-01

    The role of low density upflowing field-aligned electron beams (FEBs) on the growth rate of the electron cyclotron waves at the frequencies r < ­e, propagating downward in the direction of the Earth's magnetic field, has been analysed in the auroral region at e/e < 1 where e is the plasma frequency and ­e is the gyrofrequency. The FEBs with low to high energy (b) but with low temperature (∥b) have no effect on these waves. The FEBs with b < 1 keV and ∥b (> 1.5 keV) have been found to have significant effect on the growth rate. Analysis has revealed that it is mainly the ∥b which inhibits the growth rate (magnitude) and the range of frequency (bandwidth) of the instability mainly in the higher frequency spectrum. The inhibition in the growth rate and bandwidth increases with increase in ∥b. The FEBs with less b (giving drift velocity) reduce growth rate more than the beams with larger b. The inhibition of growth rate increases with the increase in the ratio e/e indicating that the beams are more effective at higher altitudes.

  19. Analysis of chimpanzee history based on genome sequence alignments.

    Directory of Open Access Journals (Sweden)

    Jennifer L Caswell

    2008-04-01

    Full Text Available Population geneticists often study small numbers of carefully chosen loci, but it has become possible to obtain orders of magnitude for more data from overlaps of genome sequences. Here, we generate tens of millions of base pairs of multiple sequence alignments from combinations of three western chimpanzees, three central chimpanzees, an eastern chimpanzee, a bonobo, a human, an orangutan, and a macaque. Analysis provides a more precise understanding of demographic history than was previously available. We show that bonobos and common chimpanzees were separated approximately 1,290,000 years ago, western and other common chimpanzees approximately 510,000 years ago, and eastern and central chimpanzees at least 50,000 years ago. We infer that the central chimpanzee population size increased by at least a factor of 4 since its separation from western chimpanzees, while the western chimpanzee effective population size decreased. Surprisingly, in about one percent of the genome, the genetic relationships between humans, chimpanzees, and bonobos appear to be different from the species relationships. We used PCR-based resequencing to confirm 11 regions where chimpanzees and bonobos are not most closely related. Study of such loci should provide information about the period of time 5-7 million years ago when the ancestors of humans separated from those of the chimpanzees.

  20. Codebook-based interference alignment for uplink MIMO interference channels

    KAUST Repository

    Lee, Hyun Ho

    2014-02-01

    In this paper, we propose a codebook-based interference alignment (IA) scheme in the constant multiple-input multipleoutput (MIMO) interference channel especially for the uplink scenario. In our proposed scheme, we assume cooperation among base stations (BSs) through reliable backhaul links so that global channel knowledge is available for all BSs, which enables BS to compute the transmit precoder and inform its quantized index to the associated user via limited rate feedback link.We present an upper bound on the rate loss of the proposed scheme and derive the scaling law of the feedback load tomaintain a constant rate loss relative to IA with perfect channel knowledge. Considering the impact of overhead due to training, cooperation, and feedback, we address the effective degrees of freedom (DOF) of the proposed scheme and derive the maximization of the effective DOF. From simulation results, we verify our analysis on the scaling law to preserve the multiplexing gain and confirm that the proposed scheme is more effective than the conventional IA scheme in terms of the effective DOF. © 2014 KICS.

  1. C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks.

    Science.gov (United States)

    Memišević, Vesna; Pržulj, Nataša

    2012-07-01

    Networks are an invaluable framework for modeling biological systems. Analyzing protein-protein interaction (PPI) networks can provide insight into underlying cellular processes. It is expected that comparison and alignment of biological networks will have a similar impact on our understanding of evolution, biological function, and disease as did sequence comparison and alignment. Here, we introduce a novel pairwise global alignment algorithm called Common-neighbors based GRAph ALigner (C-GRAAL) that uses heuristics for maximizing the number of aligned edges between two networks and is based solely on network topology. As such, it can be applied to any type of network, such as social, transportation, or electrical networks. We apply C-GRAAL to align PPI networks of eukaryotic and prokaryotic species, as well as inter-species PPI networks, and we demonstrate that the resulting alignments expose large connected and functionally topologically aligned regions. We use the resulting alignments to transfer biological knowledge across species, successfully validating many of the predictions. Moreover, we show that C-GRAAL can be used to align human-pathogen inter-species PPI networks and that it can identify patterns of pathogen interactions with host proteins solely from network topology.

  2. Active network alignment: a matching-based approach

    CERN Document Server

    Malmi, Eric; Gionis, Aristides

    2016-01-01

    Network alignment is the problem of matching the nodes of two graphs, maximizing the similarity of the matched nodes and the edges between them. This problem is encountered in a wide array of applications - from biological networks to social networks to ontologies - where multiple networked data sources need to be integrated. Due to the difficulty of the task, an accurate alignment can rarely be found without human assistance. Thus, it is of great practical importance to develop network alignment algorithms that can optimally leverage experts who are able to provide the correct alignment for a small number of nodes. Yet, only a handful of existing works address this active network alignment setting. The majority of the existing active methods focus on absolute queries ("are nodes $a$ and $b$ the same or not?"), whereas we argue that it is generally easier for a human expert to answer relative queries ("which node in the set $\\{b_1, \\ldots, b_n\\}$ is the most similar to node $a$?"). This paper introduces a nov...

  3. LCLS Undulator Commissioning, Alignment, and Performance

    Energy Technology Data Exchange (ETDEWEB)

    Nuhn, Heinz-Dieter

    2009-10-30

    The LCLS x-ray FEL has recently achieved its 1.5-Angstrom lasing and saturation goals upon first trial. This was achieved as a result of a thorough pre-beam checkout, both traditional and beam-based component alignment techniques, and high electron beam brightness. The x-ray FEL process demands very tight tolerances on the straightness of the electron beam trajectory (<5 {micro}m) through the LCLS undulator system. Tight, but less stringent tolerances of {approx}100 {micro}m rms were met for the transverse placement of the individual undulator segments with respect to the beam axis. The tolerances for electron beam straightness can only be met through a beam-based alignment (BBA) method, which is implemented using large electron energy variations and sub-micron resolution cavity beam position monitors (BPM), with precise conventional alignment used to set the starting conditions. Precision-fiducialization of components mounted on remotely adjustable girders, and special beam-finder wires (BFW) at each girder have been used to meet these challenging alignment tolerances. Longer-term girder movement due to ground motion and temperature changes are being monitored, continuously, by a unique stretched wire and hydrostatic level Alignment Diagnostics System (ADS).

  4. NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

    Directory of Open Access Journals (Sweden)

    Lund Ole

    2009-09-01

    Full Text Available Abstract Background The major histocompatibility complex (MHC molecule plays a central role in controlling the adaptive immune response to infections. MHC class I molecules present peptides derived from intracellular proteins to cytotoxic T cells, whereas MHC class II molecules stimulate cellular and humoral immunity through presentation of extracellularly derived peptides to helper T cells. Identification of which peptides will bind a given MHC molecule is thus of great importance for the understanding of host-pathogen interactions, and large efforts have been placed in developing algorithms capable of predicting this binding event. Results Here, we present a novel artificial neural network-based method, NN-align that allows for simultaneous identification of the MHC class II binding core and binding affinity. NN-align is trained using a novel training algorithm that allows for correction of bias in the training data due to redundant binding core representation. Incorporation of information about the residues flanking the peptide-binding core is shown to significantly improve the prediction accuracy. The method is evaluated on a large-scale benchmark consisting of six independent data sets covering 14 human MHC class II alleles, and is demonstrated to outperform other state-of-the-art MHC class II prediction methods. Conclusion The NN-align method is competitive with the state-of-the-art MHC class II peptide binding prediction algorithms. The method is publicly available at http://www.cbs.dtu.dk/services/NetMHCII-2.0.

  5. Magnetic alignment and the Poisson alignment reference system

    Science.gov (United States)

    Griffith, L. V.; Schenz, R. F.; Sommargren, G. E.

    1990-08-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This article begins with a review of the motivation for developing an alignment system that will assure better than 100-μm accuracy in the alignment of the magnetic axis throughout an FEL. The 100-μm accuracy is an error circle about an ideal axis for 300 m or more. The article describes techniques for identifying the magnetic axes of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development of a straight-line reference based on the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. The Poisson alignment reference system should be accurate to 25 μm over 300 m, which is believed to be a factor-of-4 improvement over earlier techniques. An error budget shows that only 25% of the total budgeted tolerance is used for the alignment reference system, so the remaining tolerances should fall within the allowable range for FEL alignment.

  6. CORE: Common Region Extension Based Multiple Protein Structure Alignment for Producing Multiple Solution

    Institute of Scientific and Technical Information of China (English)

    Woo-Cheol Kim; Sanghyun Park; Jung-Im Won

    2013-01-01

    Over the past several decades,biologists have conducted numerous studies examining both general and specific functions of proteins.Generally,if similarities in either the structure or sequence of amino acids exist for two proteins,then a common biological function is expected.Protein function is determined primarily based on the structure rather than the sequence of amino acids.The algorithm for protein structure alignment is an essential tool for the research.The quality of the algorithm depends on the quality of the similarity measure that is used,and the similarity measure is an objective function used to determine the best alignment.However,none of existing similarity measures became golden standard because of their individual strength and weakness.They require excessive filtering to find a single alignment.In this paper,we introduce a new strategy that finds not a single alignment,but multiple alignments with different lengths.This method has obvious benefits of high quality alignment.However,this novel method leads to a new problem that the running time for this method is considerably longer than that for methods that find only a single alignment.To address this problem,we propose algorithms that can locate a common region (CORE) of multiple alignment candidates,and can then extend the CORE into multiple alignments.Because the CORE can be defined from a final alignment,we introduce CORE* that is similar to CORE and propose an algorithm to identify the CORE*.By adopting CORE* and dynamic programming,our proposed method produces multiple alignments of various lengths with higher accuracy than previous methods.In the experiments,the alignments identified by our algorithm are longer than those obtained by TM-align by 17% and 15.48%,on average,when the comparison is conducted at the level of super-family and fold,respectively.

  7. Effect of the ion-beam bombardment and annealing temperature on sol-gel derived yttrium aluminum oxide film as liquid crystal alignment layer

    Science.gov (United States)

    Jeong, Hae-Chang; Heo, Gi-Seok; Kim, Eun-Mi; Lee, Ju Hwan; Han, Jeong-Min; Seo, Dae-Shik

    2017-02-01

    We demonstrated a homogeneous liquid-crystal (LC) alignment state on yttrium aluminum oxide (YAlO) films, where the alignment was induced by ion-beam (IB) irradiation. Topographical analysis was performed by atomic force microscopy as a function of annealing temperature. Higher annealing temperatures yielded a smoother surface, accompanied by reduced light scattering. Transparency in the visible region increased on the surface fabricated at higher annealing temperatures. LC alignment mechanism was determined by X-ray diffraction (XRD) analysis. Moreover, IB-irradiated YAlO films annealed at temperatures greater than 200 °C exhibited good thermal stability and low capacitance-voltage hysteresis. The IB-irradiated YAlO films are suitable as alternative alignment layers in advanced LC display applications.

  8. LHCb: Experience with LHCb alignment software on first data

    CERN Multimedia

    Deissenroth, M

    2009-01-01

    We report results obtained with different track-based algorithms for the alignment of the LHCb detector with first data. The large-area Muon Detector and Outer Tracker have been aligned with a large sample of tracks from cosmic rays. The three silicon detectors --- VELO, TT-station and Inner Tracker --- have been aligned with beam-induced events from the LHC injection line. We compare the results from the track-based alignment with expectations from detector survey.

  9. A Vondrak low pass filter for IMU sensor initial alignment on a disturbed base.

    Science.gov (United States)

    Li, Zengke; Wang, Jian; Gao, Jingxiang; Li, Binghao; Zhou, Feng

    2014-12-10

    The initial alignment of the Inertial Measurement Unit (IMU) is an important process of INS to determine the coordinate transformation matrix which is used in the integration of Global Positioning Systems (GPS) with Inertial Navigation Systems (INS). In this paper a novel alignment method for a disturbed base, such as a vehicle disturbed by wind outdoors, implemented with the aid of a Vondrak low pass filter, is proposed. The basic principle of initial alignment including coarse alignment and fine alignment is introduced first. The spectral analysis is processed to compare the differences between the characteristic error of INS force observation on a stationary base and on disturbed bases. In order to reduce the high frequency noise in the force observation more accurately and more easily, a Vondrak low pass filter is constructed based on the spectral analysis result. The genetic algorithms method is introduced to choose the smoothing factor in the Vondrak filter and the corresponding objective condition is built. The architecture of the proposed alignment method with the Vondrak low pass filter is shown. Furthermore, simulated experiments and actual experiments were performed to validate the new algorithm. The results indicate that, compared with the conventional alignment method, the Vondrak filter could eliminate the high frequency noise in the force observation and the proposed alignment method could improve the attitude accuracy. At the same time, only one parameter needs to be set, which makes the proposed method easier to implement than other low-pass filter methods.

  10. A Vondrak Low Pass Filter for IMU Sensor Initial Alignment on a Disturbed Base

    Directory of Open Access Journals (Sweden)

    Zengke Li

    2014-12-01

    Full Text Available The initial alignment of the Inertial Measurement Unit (IMU is an important process of INS to determine the coordinate transformation matrix which is used in the integration of Global Positioning Systems (GPS with Inertial Navigation Systems (INS. In this paper a novel alignment method for a disturbed base, such as a vehicle disturbed by wind outdoors, implemented with the aid of a Vondrak low pass filter, is proposed. The basic principle of initial alignment including coarse alignment and fine alignment is introduced first. The spectral analysis is processed to compare the differences between the characteristic error of INS force observation on a stationary base and on disturbed bases. In order to reduce the high frequency noise in the force observation more accurately and more easily, a Vondrak low pass filter is constructed based on the spectral analysis result. The genetic algorithms method is introduced to choose the smoothing factor in the Vondrak filter and the corresponding objective condition is built. The architecture of the proposed alignment method with the Vondrak low pass filter is shown. Furthermore, simulated experiments and actual experiments were performed to validate the new algorithm. The results indicate that, compared with the conventional alignment method, the Vondrak filter could eliminate the high frequency noise in the force observation and the proposed alignment method could improve the attitude accuracy. At the same time, only one parameter needs to be set, which makes the proposed method easier to implement than other low-pass filter methods.

  11. Self-aligning LED-based optical link

    Science.gov (United States)

    Shen, Thomas C.; Drost, Robert J.; Rzasa, John R.; Sadler, Brian M.; Davis, Christopher C.

    2016-09-01

    The steady advances in light-emitting diode (LED) technology have motivated the use of LEDs in optical wireless communication (OWC) applications such as indoor local area networks (LANs) and communication between mobile platforms (e.g., robots, vehicles). In contrast to traditional radio frequency (RF) wireless communication, OWC utilizes electromagnetic spectrum that is largely unregulated and unrestricted. OWC communication may be especially useful in RF-denied environments, in which RF communication may be prohibited or undesirable. However, OWC does present some challenges, including the need to maintain alignment between potentially moving nodes. We describe a novel system for link alignment that is composed of a hyperboloidal mirror, camera, and gimbal. The experimental system is able to use the mirror and camera to detect an LED beacon of a neighboring node and estimate its bearing (azimuth and elevation), point the gimbal towards the beacon, and establish an optical link.

  12. An Investigation of the Sampling-Based Alignment Method and its Contributions

    Directory of Open Access Journals (Sweden)

    Juan Luo

    2013-07-01

    Full Text Available By investigating the distribution of phrase pairs in phrase translation tables, the work in this paperdescribes an approach to increase the number of n-gram alignments in phrase translation tables outputbya sampling-based alignment method. This approach consists in enforcing the alignment of n-grams indistinct translation subtables so as to increase the number of n-grams. Standard normal distribution is usedto allot alignment time among translation subtables, which results in adjustment of the distribution of n-grams. This leads to better evaluation results on statistical machine translation tasks than the originalsampling-based alignment approach. Furthermore, thetranslation quality obtained by merging phrasetranslation tables computed from the sampling-basedalignment method and from MGIZA++ is examined

  13. Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments

    Directory of Open Access Journals (Sweden)

    Tcherepanov Vasily

    2004-07-01

    Full Text Available Abstract Background With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than gene content because two strains of an organism may share the same set of predicted genes but still differ in their pathogenicity profiles. For example, detailed comparison of multiple isolates of the smallpox virus genome (each approximately 200 kb, with 200 genes is not feasible without new bioinformatics tools. Results A software package, Base-By-Base, has been developed that provides visualization tools to enable researchers to 1 rapidly identify and correct alignment errors in large, multiple genome alignments; and 2 generate tabular and graphical output of differences between the genomes at the nucleotide level. Base-By-Base uses detailed annotation information about the aligned genomes and can list each predicted gene with nucleotide differences, display whether variations occur within promoter regions or coding regions and whether these changes result in amino acid substitutions. Base-By-Base can connect to our mySQL database (Virus Orthologous Clusters; VOCs to retrieve detailed annotation information about the aligned genomes or use information from text files. Conclusion Base-By-Base enables users to quickly and easily compare large viral genomes; it highlights small differences that may be responsible for important phenotypic differences such as virulence. It is available via the Internet using Java Web Start and runs on Macintosh, PC and Linux operating systems with the Java 1.4 virtual machine.

  14. A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW

    Science.gov (United States)

    Wang, Sheng-Hao; Zhang, Kai; Wang, Zhi-Li; Gao, Kun; Wu, Zhao; Zhu, Pei-Ping; Wu, Zi-Yu

    2015-01-01

    X-ray computed tomography at the nanometer scale (nano-CT) offers a wide range of applications in scientific and industrial areas. Here we describe a reliable, user-friendly, and fast software package based on LabVIEW that may allow us to perform all procedures after the acquisition of raw projection images in order to obtain the inner structure of the investigated sample. A suitable image alignment process to address misalignment problems among image series due to mechanical manufacturing errors, thermal expansion, and other external factors has been considered, together with a novel fast parallel beam 3D reconstruction procedure that was developed ad hoc to perform the tomographic reconstruction. We have obtained remarkably improved reconstruction results at the Beijing Synchrotron Radiation Facility after the image calibration, the fundamental role of this image alignment procedure was confirmed, which minimizes the unwanted blurs and additional streaking artifacts that are always present in reconstructed slices. Moreover, this nano-CT image alignment and its associated 3D reconstruction procedure are fully based on LabVIEW routines, significantly reducing the data post-processing cycle, thus making the activity of the users faster and easier during experimental runs.

  15. Plasma-Based Ion Beam Sources

    Energy Technology Data Exchange (ETDEWEB)

    Loeb, H. W.

    2005-07-01

    Ion beam sources cover a broad spectrum of scientific and technical applications delivering ion currents between less than 1 mA and about 100 A at acceleration voltages between 100 V and 100 kV. The ions are mostly generated by electron collisions in a gas discharge and then extracted from the discharge plasma, focused and post-accelerated by single- or multi-aperture electrode systems. Some important applications require the neutralization of the exhausted beam either by charge exchange or by admixture of electrons. In the first part of the paper, the theory of ionization by electron impact, the energy and carrier balances in the plasma, and the extraction and focusing mechanisms will be outlined. The principles of the preferred gas discharges and of the ion beam sources based on them are discussed; i.e. of the Penning, bombardment, arc, duoplasmatron, radio frequency, and microwave types. In the second part of the paper, the special requirements of the different applications are described together with the related source hardware. One distinguishes: 1. Single-aperture ion sources producing protons, heavy ions, isotope ions, etc. for particle accelerators, ion microprobes, mass spectrometers, isotope separators, etc.; quality determinative quantities are brightness, emittance, energy width, etc. 2. Broad-beam multi-aperture injector sources for fusion machines with positive or negative deuterium ions; very high beam densities, small portions of molecular ions, flat beam profiles with small divergence angles, etc. are required. 3. Broad-beam multi-aperture ion thrusters for space propulsion operated with singly charged xenon ions; high efficiencies, reliable operation, and long lifetimes are most important. Spin-offs are applied in industry for material processing. Referring to these applications, the following sources will be described in some detail: 1. Cold cathode and filament driven sources, capillary arc and plasmatron types, microwave and ECR-sources. 2

  16. A Research on Bilingual Dictionary Based Sentence Alignment for Chinese English Parallel Corpus

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Parallel corpus is of great importance to machine translation, and automatic sentence alignment is the first step towards its processing. This paper puts forward a bilingual dictionary based sentence alignment method for Chinese English parallel corpus, which differs from previous length based algorithm in its knowledge-rich approach. Experimental result shows that this method produces over 93% accuracy with usual English-Chinese dictionaries whose translations cover 31.88%~47.90% of the corpus.

  17. A New Pre-alignment Approach Based on Four-Quadrant-Photo-Detector for IC Mask

    Institute of Scientific and Technical Information of China (English)

    Yun Liu; De Xu; Min Tan

    2007-01-01

    In this paper, a new pre-alignment approach based on Four-Quadrant-Photo-Detector (FQPD) for IC mask is presented.The voltage outputs from FQPDs are the functions of alignment mark's position offsets with respect to FQPDs. The functions are obtained with least squares error (LSE)-based polynomial fitting after the normalization of experimental data. As the acquired functions are not monotonic about their variables, the alignment mark's position offset cannot be given by direct inverse operation on the obtained functions. However, the piecewise polynomial fitting gives the inverse function, with which the alignment mark's position offset can be predicted according to the voltage outputs of FQPDs. On the basis of prediction, a pre-alignment control strategy is proposed.The feasibility and robustness of the pre-alignment approach is shown by experiments. Furthermore, the results demonstrate that the maximum error of mask's position offset in the X- and Y- directions is less than 15 μm after coarse pre-alignment.

  18. Shape-based discriminative analysis of combined bilateral hippocampi using multiple object alignment

    Science.gov (United States)

    Shen, Li; Makedon, Fillia; Saykin, Andrew

    2004-05-01

    Shape analysis of hippocampi in schizophrenia has been preformed previously using the spherical harmonic SPHARM description. In these studies, the left and right hippocampi are aligned independently and the spatial relation between them is not explored. This paper presents a new SPHARM-based technique which examines not only the individual shape information of the two hippocampi but also the spatial relation between them. The left and right hippocampi are treated as a single shape configuration. A ploy-shape alignment algorithm is developed for aligning configurations of multiple SPHARM surfaces as follows: (1) the total volume is normalized; (2) the parameter space is aligned for creating the surface correspondence; (3) landmarks are created by a uniform sampling of multiple surfaces for each configuration; (4) a quaternion-based algorithm is employed to align each landmark representation to the mean configuration through the least square rotation and translation iteratively until the mean converges. After applying the poly-shape alignment algorithm, a point distribution model is applied to aligned landmarks for feature extraction. Classification is performed using Fisher's linear discriminant with an effective feature selection scheme. Applying the above procedure to our hippocampal data (14 controls versus 25 schizophrenics, all right-handed males), we achieve the best cross-validation accuracy of 92%, supporting the idea that the whole shape configuration of the two hippocampi provides valuable information in detecting schizophrenia. The results of an ROC analysis and a visualization of discriminative patterns are also included.

  19. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.

    Science.gov (United States)

    Thompson, Julie D; Koehl, Patrice; Ripp, Raymond; Poch, Olivier

    2005-10-01

    Multiple sequence alignment is one of the cornerstones of modern molecular biology. It is used to identify conserved motifs, to determine protein domains, in 2D/3D structure prediction by homology and in evolutionary studies. Recently, high-throughput technologies such as genome sequencing and structural proteomics have lead to an explosion in the amount of sequence and structure information available. In response, several new multiple alignment methods have been developed that improve both the efficiency and the quality of protein alignments. Consequently, the benchmarks used to evaluate and compare these methods must also evolve. We present here the latest release of the most widely used multiple alignment benchmark, BAliBASE, which provides high quality, manually refined, reference alignments based on 3D structural superpositions. Version 3.0 of BAliBASE includes new, more challenging test cases, representing the real problems encountered when aligning large sets of complex sequences. Using a novel, semiautomatic update protocol, the number of protein families in the benchmark has been increased and representative test cases are now available that cover most of the protein fold space. The total number of proteins in BAliBASE has also been significantly increased from 1444 to 6255 sequences. In addition, full-length sequences are now provided for all test cases, which represent difficult cases for both global and local alignment programs. Finally, the BAliBASE Web site (http://www-bio3d-igbmc.u-strasbg.fr/balibase) has been completely redesigned to provide a more user-friendly, interactive interface for the visualization of the BAliBASE reference alignments and the associated annotations.

  20. DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Kaufmann Michael

    2005-03-01

    Full Text Available Abstract Background We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous version 2.2 of DIALIGN. This previous version is superior to Needleman-Wunsch-based multi-alignment programs on locally related sequence sets. However, it is often outperformed by these methods on data sets with global but weak similarity at the primary-sequence level. Results In the present paper, we discuss strengths and weaknesses of DIALIGN in view of the underlying objective function. Based on these results, we propose several heuristics to improve the segment-based alignment approach. For pairwise alignment, we implemented a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, we use an improved greedy procedure that is less sensitive to spurious local sequence similarities. To evaluate our method on globally related protein families, we used the well-known database BAliBASE. For benchmarking tests on locally related sequences, we created a new reference database called IRMBASE which consists of simulated conserved motifs implanted into non-related random sequences. Conclusion On BAliBASE, our new program performs significantly better than the previous version of DIALIGN and is comparable to the standard global aligner CLUSTAL W, though it is outperformed by some newly developed programs that focus on global alignment. On the locally related test sets in IRMBASE, our method outperforms all other programs that we evaluated.

  1. Laser shaft alignment measurement model

    Science.gov (United States)

    Mo, Chang-tao; Chen, Changzheng; Hou, Xiang-lin; Zhang, Guoyu

    2007-12-01

    Laser beam's track which is on photosensitive surface of the a receiver will be closed curve, when driving shaft and the driven shaft rotate with same angular velocity and rotation direction. The coordinate of arbitrary point which is on the curve is decided by the relative position of two shafts. Basing on the viewpoint, a mathematic model of laser alignment is set up. By using a data acquisition system and a data processing model of laser alignment meter with single laser beam and a detector, and basing on the installation parameter of computer, the state parameter between two shafts can be obtained by more complicated calculation and correction. The correcting data of the four under chassis of the adjusted apparatus moving on the level and the vertical plane can be calculated. This will instruct us to move the apparatus to align the shafts.

  2. A Kalman Filter for SINS Self-Alignment Based on Vector Observation.

    Science.gov (United States)

    Xu, Xiang; Xu, Xiaosu; Zhang, Tao; Li, Yao; Tong, Jinwu

    2017-01-29

    In this paper, a self-alignment method for strapdown inertial navigation systems based on the q-method is studied. In addition, an improved method based on integrating gravitational apparent motion to form apparent velocity is designed, which can reduce the random noises of the observation vectors. For further analysis, a novel self-alignment method using a Kalman filter based on adaptive filter technology is proposed, which transforms the self-alignment procedure into an attitude estimation using the observation vectors. In the proposed method, a linear psuedo-measurement equation is adopted by employing the transfer method between the quaternion and the observation vectors. Analysis and simulation indicate that the accuracy of the self-alignment is improved. Meanwhile, to improve the convergence rate of the proposed method, a new method based on parameter recognition and a reconstruction algorithm for apparent gravitation is devised, which can reduce the influence of the random noises of the observation vectors. Simulations and turntable tests are carried out, and the results indicate that the proposed method can acquire sound alignment results with lower standard variances, and can obtain higher alignment accuracy and a faster convergence rate.

  3. Implementation of EPICS based Control System for Radioisotope Beam line

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jae-Ha; Ahn, Tae-Sung; Song, Young-Gi; Kwon, Hyeok-Jung; Cho, Yong-Sub [Korea Atomic Energy Research Institute, Gyeongju (Korea, Republic of)

    2015-10-15

    Korea Mult-purpose Accelerator Complex (KOMAC) has been operating 100 MeV proton linear accelerator . For operating 100 MeV linac, various control system has been implemented such as vacuum, power supply, RCCS and etc. KOMAC is operating two beam lines so that clients can use 100 MeV proton beam for their experiment. KOMAC sends beam to beam line and target room using two dipole magnets and several quadrupole magnets. As demand for experiments and Radius Isotope using beam is increased, another beam line is under construction and RI beam line control system is need. To synchronize with KOMAC control system, RI beam line control system is based on Experimental Physics and Industrial control System (EPICS) software. The beam is transported to RI beam line to control magnet power supply and vacuum. Implementation of RI beam line control system is presented and some preliminary results are reported. The base RI beam line control system is implemented. It can control beam direction and vacuum. Comparing archived data and current data, RI beam line and control system will be improved. In the future, scroll pump and gate control system will be implemented using programmable logic controller PLC. RI beam interlock sequence will be added to KOMAC interlock system to protect linac.

  4. Fractal zone plate beam based optical tweezers

    Science.gov (United States)

    Cheng, Shubo; Zhang, Xinyu; Ma, Wenzhuo; Tao, Shaohua

    2016-01-01

    We demonstrate optical manipulation with an optical beam generated by a fractral zone plate (FZP). The experimental results show that the FZP beam can simultaneously trap multiple particles positioned in different focal planes of the FZP beam, owing to the multiple foci and self-reconstruction property of the FZP beam. The FZP beam can also be used to construct three-dimensional optical tweezers for potential applications. PMID:27678305

  5. Utilizing Time Redundancy for Particle Filter-Based Transfer Alignment

    Science.gov (United States)

    Chattaraj, Suvendu; Mukherjee, Abhik

    2016-07-01

    Signal detection in the presence of high noise is a challenge in natural sciences. From understanding signals emanating out of deep space probes to signals in protein interactions for systems biology, domain specific innovations are needed. The present work is in the domain of transfer alignment (TA), which deals with estimation of the misalignment of deliverable daughter munitions with respect to that of the delivering mother platform. In this domain, the design of noise filtering scheme has to consider a time varying and nonlinear system dynamics at play. The accuracy of conventional particle filter formulation suffers due to deviations from modeled system dynamics. An evolutionary particle filter can overcome this problem by evolving multiple system models through few support points per particle. However, this variant has even higher time complexity for real-time execution. As a result, measurement update gets deferred and the estimation accuracy is compromised. By running these filter algorithms on multiple processors, the execution time can be reduced, to allow frequent measurement updates. Such scheme ensures better system identification so that performance improves in case of simultaneous ejection of multiple daughters and also results in better convergence of TA algorithms for single daughter.

  6. SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.

    Science.gov (United States)

    Liu, Chi-Man; Wong, Thomas; Wu, Edward; Luo, Ruibang; Yiu, Siu-Ming; Li, Yingrui; Wang, Bingqiang; Yu, Chang; Chu, Xiaowen; Zhao, Kaiyong; Li, Ruiqiang; Lam, Tak-Wah

    2012-03-15

    SOAP3 is the first short read alignment tool that leverages the multi-processors in a graphic processing unit (GPU) to achieve a drastic improvement in speed. We adapted the compressed full-text index (BWT) used by SOAP2 in view of the advantages and disadvantages of GPU. When tested with millions of Illumina Hiseq 2000 length-100 bp reads, SOAP3 takes < 30 s to align a million read pairs onto the human reference genome and is at least 7.5 and 20 times faster than BWA and Bowtie, respectively. For aligning reads with up to four mismatches, SOAP3 aligns slightly more reads than BWA and Bowtie; this is because SOAP3, unlike BWA and Bowtie, is not heuristic-based and always reports all answers.

  7. Measurement of word frequencies in genomic DNA sequences based on partial alignment and fuzzy set.

    Science.gov (United States)

    Shida, Fumiya; Mizuta, Satoshi

    2014-08-01

    Accompanied with the rapid increase of the amount of data registered in the databases of biological sequences, the need for a fast method of sequence comparison applicable to sequences of large size is also increasing. In general, alignment is used for sequence comparison. However, the alignment may not be appropriate for comparison of sequences of large size such as whole genome sequences due to its large time complexity. In this article, we propose a semi alignment-free method of sequence comparison based on word frequency distributions, in which we partially use the alignment to measure word frequencies along with the idea of fuzzy set theory. Experiments with ten bacterial genome sequences demonstrated that the fuzzy measurements has the effect that facilitates discrimination between close relatives and distant relatives.

  8. Alignment and temperature effects in liquid-crystal-based active polarimetry.

    Science.gov (United States)

    Gladish, James C; Duncan, Donald D

    2014-06-20

    It is well known that in liquid crystal (LC)-based active polarimetry, alignment and temperature effects impact polarimeter performance. Practically speaking, when constructing a polarimetric measurement system from LC variable retarders (LCVRs), unavoidable alignment and temperature uncertainties will occur, leading to systematic error that propagates to the Mueller matrix. Typical calibration methods use only a single metric to assess polarimeter performance (the condition number) and often ignore the relationship between systematic error and specific Mueller matrix elements. Here we explore alignment and temperature effects in a Stokes generator and polarimeter, each consisting of two LCVRs, through a series of simulations to calibrate the polarimeter and measure the Mueller matrix of air. We achieve this by modifying an existing LCVR model to incorporate alignment and temperature effects. This new approach offers insight into employing LCVRs individually and associating particular Mueller matrix element error with specific LCVR effects.

  9. Method for auto-alignment of digital optical phase conjugation systems based on digital propagation.

    Science.gov (United States)

    Jang, Mooseok; Ruan, Haowen; Zhou, Haojiang; Judkewitz, Benjamin; Yang, Changhuei

    2014-06-16

    Optical phase conjugation (OPC) has enabled many optical applications such as aberration correction and image transmission through fiber. In recent years, implementation of digital optical phase conjugation (DOPC) has opened up the possibility of its use in biomedical optics (e.g. deep-tissue optical focusing) due to its ability to provide greater-than-unity OPC reflectivity (the power ratio of the phase conjugated beam and input beam to the OPC system) and its flexibility to accommodate additional wavefront manipulations. However, the requirement for precise (pixel-to-pixel matching) alignment of the wavefront sensor and the spatial light modulator (SLM) limits the practical usability of DOPC systems. Here, we report a method for auto-alignment of a DOPC system by which the misalignment between the sensor and the SLM is auto-corrected through digital light propagation. With this method, we were able to accomplish OPC playback with a DOPC system with gross sensor-SLM misalignment by an axial displacement of up to~1.5 cm, rotation and tip/tilt of ~5° and in-plane displacement of ~5 mm (dependent on the physical size of the sensor and the SLM). Our auto-alignment method robustly achieved a DOPC playback peak-to-background ratio (PBR) corresponding to more than ~30 % of the theoretical maximum. As an additional advantage, the auto-alignment procedure can be easily performed at will and, as such, allows us to correct for small mechanical drifts within the DOPC systems, thus overcoming a previously major DOPC system vulnerability. We believe that this reported method for implementing robust DOPC systems will broaden the practical utility of DOPC systems.

  10. CWDM based HDMI interconnect incorporating passively aligned POF linked optical subassembly modules

    Science.gov (United States)

    Lee, Hak-Soon; Lee, Sang-Shin; Son, Yung-Sung

    2011-08-01

    A four-channel transmitter OSA (TOSA) and a receiver optical sub-assembly (ROSA) module were presented. They take advantage of a coarse WDM (CWDM) scheme, employing two types of VCSELs at 780 and 850 nm, where no wavelength filters are involved in the TOSA. The ROSA and TOSA were constructed through a fully passive alignment process using components produced by virtue of a cost effective plastic injection molding technique. In order to build a high quality optical HDMI interconnect, four channel optical links between these modules ware established via two graded-index plastic optical fibers (GI-POFs). The HDMI interconnect was thoroughly evaluated in terms of the alignment tolerance, the light beam propagation, and the data transmission capability. For the ROSA, the measured tolerance, as affected by the photodiode alignment, was ~45 μm and over 200 μm for the transverse and longitudinal directions, respectively. For the TOSA, the tolerance, which is mostly dependent upon the VCSEL alignment, was ~20 μm and more than 200 μm for the transverse and longitudinal directions, respectively. The beam profiles for the TOSA and ROSA were monitored to confirm their feasibility from the optical coupling perspective. A digital signal at 2.5 Gb/s was efficiently transmitted through the HDMI interconnect with a bit error ratio of below 10-16. A 1080p HDMI signal from a Blu-ray player was delivered through the interconnect to an LCD monitor and successfully displayed a high quality video.

  11. Application of diamond based beam loss monitors

    Energy Technology Data Exchange (ETDEWEB)

    Hempel, Maria [Brandenburgische Technische Univ. Cottbus (Germany); DESY, Zeuthen (Germany); CERN, Geneva (Switzerland); Baer, Tobias [CERN, Geneva (Switzerland); Hamburg Univ. (Germany); Castro Carballo, Elena Maria [DESY, Zeuthen (Germany); Lohmann, Wolfgang [Brandenburgische Technische Univ. Cottbus (Germany); DESY, Zeuthen (Germany); Schmidt, Ruediger [CERN, Geneva (Switzerland)

    2013-07-01

    The LHC has an operational stored energy of 130MJ per beam. Only a small percentage of beam losses in the LHC equipment can damage material or lead to magnet quenches. Therefore, it is important to monitor different types of beam losses, e.g. scattering on residual gas particles, UFOs, collisions and injection losses. A detailed understanding of beam loss mechanisms is necessary to reduce them and ensure save operation. Two different beam loss monitors are installed in the LHC tunnel: ionization chambers and diamond sensors. Ionization chambers trigger a beam dump if beam losses exceed a certain threshold. They have a time resolution of 40um (half LHC turn) which is not sufficient to resolve bunch-by-bunch beam losses. Diamond sensors have a nanosecond time resolution and can therefore detect bunch-by-bunch beam losses. This time resolution allows an analysis of various types of beam losses and an understanding of the mechanisms. For the first time beam loss intensities were measured bunch-by-bunch caused by different origins of losses. Beam loss measurements using diamond sensors will be presented. The results are compared to simulations and good qualitative agreement was found. The potential of diamond sensors for LHC and experiment applications are discussed.

  12. mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.

    Science.gov (United States)

    Léonard, Sylvain; Joseph, Agnel Praveen; Srinivasan, Narayanaswamy; Gelly, Jean-Christophe; de Brevern, Alexandre G

    2014-04-01

    The increasing number of available protein structures requires efficient tools for multiple structure comparison. Indeed, multiple structural alignments are essential for the analysis of function, evolution and architecture of protein structures. For this purpose, we proposed a new web server called multiple Protein Block Alignment (mulPBA). This server implements a method based on a structural alphabet to describe the backbone conformation of a protein chain in terms of dihedral angles. This 'sequence-like' representation enables the use of powerful sequence alignment methods for primary structure comparison, followed by an iterative refinement of the structural superposition. This approach yields alignments superior to most of the rigid-body alignment methods and highly comparable with the flexible structure comparison approaches. We implement this method in a web server designed to do multiple structure superimpositions from a set of structures given by the user. Outputs are given as both sequence alignment and superposed 3D structures visualized directly by static images generated by PyMol or through a Jmol applet allowing dynamic interaction. Multiple global quality measures are given. Relatedness between structures is indicated by a distance dendogram. Superimposed structures in PDB format can be also downloaded, and the results are quickly obtained. mulPBA server can be accessed at www.dsimb.inserm.fr/dsimb_tools/mulpba/ .

  13. Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.

    Science.gov (United States)

    He, Xin; Ling, Xu; Sinha, Saurabh

    2009-03-01

    Cross-species comparison has emerged as a powerful paradigm for predicting cis-regulatory modules (CRMs) and understanding their evolution. The comparison requires reliable sequence alignment, which remains a challenging task for less conserved noncoding sequences. Furthermore, the existing models of DNA sequence evolution generally do not explicitly treat the special properties of CRM sequences. To address these limitations, we propose a model of CRM evolution that captures different modes of evolution of functional transcription factor binding sites (TFBSs) and the background sequences. A particularly novel aspect of our work is a probabilistic model of gains and losses of TFBSs, a process being recognized as an important part of regulatory sequence evolution. We present a computational framework that uses this model to solve the problems of CRM alignment and prediction. Our alignment method is similar to existing methods of statistical alignment but uses the conserved binding sites to improve alignment. Our CRM prediction method deals with the inherent uncertainties of binding site annotations and sequence alignment in a probabilistic framework. In simulated as well as real data, we demonstrate that our program is able to improve both alignment and prediction of CRM sequences over several state-of-the-art methods. Finally, we used alignments produced by our program to study binding site conservation in genome-wide binding data of key transcription factors in the Drosophila blastoderm, with two intriguing results: (i) the factor-bound sequences are under strong evolutionary constraints even if their neighboring genes are not expressed in the blastoderm and (ii) binding sites in distal bound sequences (relative to transcription start sites) tend to be more conserved than those in proximal regions. Our approach is implemented as software, EMMA (Evolutionary Model-based cis-regulatory Module Analysis), ready to be applied in a broad biological context.

  14. Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.

    Directory of Open Access Journals (Sweden)

    Xin He

    2009-03-01

    Full Text Available Cross-species comparison has emerged as a powerful paradigm for predicting cis-regulatory modules (CRMs and understanding their evolution. The comparison requires reliable sequence alignment, which remains a challenging task for less conserved noncoding sequences. Furthermore, the existing models of DNA sequence evolution generally do not explicitly treat the special properties of CRM sequences. To address these limitations, we propose a model of CRM evolution that captures different modes of evolution of functional transcription factor binding sites (TFBSs and the background sequences. A particularly novel aspect of our work is a probabilistic model of gains and losses of TFBSs, a process being recognized as an important part of regulatory sequence evolution. We present a computational framework that uses this model to solve the problems of CRM alignment and prediction. Our alignment method is similar to existing methods of statistical alignment but uses the conserved binding sites to improve alignment. Our CRM prediction method deals with the inherent uncertainties of binding site annotations and sequence alignment in a probabilistic framework. In simulated as well as real data, we demonstrate that our program is able to improve both alignment and prediction of CRM sequences over several state-of-the-art methods. Finally, we used alignments produced by our program to study binding site conservation in genome-wide binding data of key transcription factors in the Drosophila blastoderm, with two intriguing results: (i the factor-bound sequences are under strong evolutionary constraints even if their neighboring genes are not expressed in the blastoderm and (ii binding sites in distal bound sequences (relative to transcription start sites tend to be more conserved than those in proximal regions. Our approach is implemented as software, EMMA (Evolutionary Model-based cis-regulatory Module Analysis, ready to be applied in a broad biological context.

  15. A unified model for transfer alignment at random misalignment angles based on second-order EKF

    Science.gov (United States)

    Cui, Xiao; Mei, Chunbo; Qin, Yongyuan; Yan, Gongmin; Liu, Zhenbo

    2017-04-01

    In the transfer alignment process of inertial navigation systems (INSs), the conventional linear error model based on the small misalignment angle assumption cannot be applied to large misalignment situations. Furthermore, the nonlinear model based on the large misalignment angle suffers from redundant computation with nonlinear filters. This paper presents a unified model for transfer alignment suitable for arbitrary misalignment angles. The alignment problem is transformed into an estimation of the relative attitude between the master INS (MINS) and the slave INS (SINS), by decomposing the attitude matrix of the latter. Based on the Rodriguez parameters, a unified alignment model in the inertial frame with the linear state-space equation and a second order nonlinear measurement equation are established, without making any assumptions about the misalignment angles. Furthermore, we employ the Taylor series expansions on the second-order nonlinear measurement equation to implement the second-order extended Kalman filter (EKF2). Monte-Carlo simulations demonstrate that the initial alignment can be fulfilled within 10 s, with higher accuracy and much smaller computational cost compared with the traditional unscented Kalman filter (UKF) at large misalignment angles.

  16. A new automatic alignment technology for single mode fiber-waveguide based on improved genetic algorithm

    Institute of Scientific and Technical Information of China (English)

    ZHENG Yu; CHEN Zhuang-zhuang; LI Ya-juan; DUAN Jian

    2009-01-01

    A novel automatic alignment algorithm of single mode fiber-waveguide based on improved genetic algorithm is proposed. The genetic searching is based on the dynamic crossover operator and the adaptive mutation operator to solve the premature convergence of simple genetic algorithm The improved genetic algorithm combines with hill-climbing method and pattern searching algorithm, to solve low precision of simple genetic algorithm in later searching. The simulation results indicate that the improved genetic algorithm can rise the alignment precision and reach the coupling loss of 0.01 dB when platform moves near 207 space points averagely.

  17. An anti-disturbance high-precision alignment for distributed POS based on inertial reference frame

    Science.gov (United States)

    Bai, Lijian; Wang, Yue

    2017-03-01

    The distributed POS is playing an important role in the ultra-high resolution aerial survey and remote sensing system, and can accurately provide time-spatial reference information for various imaging sensors. However, the distributed POS faces a special problem that the flexible arms used to connect the inertial measurement units (IMUs) would deteriorate the phenomenon that external disturbance leads to serious alignment errors. In order to improve the alignment precision of distributed POS in external disturbance, an anti-disturbance coarse alignment based on inertial reference frame is proposed. This method is developed mainly based on the structure of non-collinear vectors, which are constructed by a velocity vector determined by gravity vector integration. The disturbed acceleration and rotation is decreased a lot by the integral operation in the proposed method. Finally, the experiments were carried out and verified the validity of the proposed method.

  18. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

    Directory of Open Access Journals (Sweden)

    Toh Hiroyuki

    2008-04-01

    Full Text Available Abstract Background Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs. Recent studies, mainly based on various approximations of the Sankoff algorithm, have resulted in considerable improvement in the accuracy of pairwise structural alignment. In contrast, for the cases with more than two sequences, the practical merit of structural alignment remains unclear as compared to traditional sequence-based methods, although the importance of multiple structural alignment is widely recognized. Results We took a different approach from a straightforward extension of the Sankoff algorithm to the multiple alignments from the viewpoints of accuracy and time complexity. As a new option of the MAFFT alignment program, we developed a multiple RNA alignment framework, X-INS-i, which builds a multiple alignment with an iterative method incorporating structural information through two components: (1 pairwise structural alignments by an external pairwise alignment method such as SCARNA or LaRA and (2 a new objective function, Four-way Consistency, derived from the base-pairing probability of every sub-aligned group at every multiple alignment stage. Conclusion The BRAliBASE benchmark showed that X-INS-i outperforms other methods currently available in the sum-of-pairs score (SPS criterion. As a basis for predicting common secondary structure, the accuracy of the present method is comparable to or rather higher than those of the current leading methods such as RNA Sampler. The X-INS-i framework can be used for building a multiple RNA alignment from any combination of algorithms for pairwise RNA alignment and base-pairing probability. The source code is available at the webpage found in the Availability and requirements section.

  19. Image-based quantification of fiber alignment within electrospun tissue engineering scaffolds is related to mechanical anisotropy.

    Science.gov (United States)

    Fee, Timothy; Downs, Crawford; Eberhardt, Alan; Zhou, Yong; Berry, Joel

    2016-07-01

    It is well documented that electrospun tissue engineering scaffolds can be fabricated with variable degrees of fiber alignment to produce scaffolds with anisotropic mechanical properties. Several attempts have been made to quantify the degree of fiber alignment within an electrospun scaffold using image-based methods. However, these methods are limited by the inability to produce a quantitative measure of alignment that can be used to make comparisons across publications. Therefore, we have developed a new approach to quantifying the alignment present within a scaffold from scanning electron microscopic (SEM) images. The alignment is determined by using the Sobel approximation of the image gradient to determine the distribution of gradient angles with an image. This data was fit to a Von Mises distribution to find the dispersion parameter κ, which was used as a quantitative measure of fiber alignment. We fabricated four groups of electrospun polycaprolactone (PCL) + Gelatin scaffolds with alignments ranging from κ = 1.9 (aligned) to κ = 0.25 (random) and tested our alignment quantification method on these scaffolds. It was found that our alignment quantification method could distinguish between scaffolds of different alignments more accurately than two other published methods. Additionally, the alignment parameter κ was found to be a good predictor the mechanical anisotropy of our electrospun scaffolds. The ability to quantify fiber alignment within and make direct comparisons of scaffold fiber alignment across publications can reduce ambiguity between published results where cells are cultured on "highly aligned" fibrous scaffolds. This could have important implications for characterizing mechanics and cellular behavior on aligned tissue engineering scaffolds. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 104A: 1680-1686, 2016.

  20. Study and development of a laser based alignment system for the compact linear collider

    CERN Document Server

    AUTHOR|(CDS)2083149

    The first objective of the PhD thesis is to develop a new type of positioning sensor to align components at micrometre level over 200 m with respect to a laser beam as straight line reference. The second objective is to estimate the measurement accuracy of the total alignment system over 200 m. The context of the PhD thesis is the Compact Linear Collider project, which is a study for a future particle accelerator. The proposed positioning sensor is made of a camera and an open/close shutter. The sensor can measure the position of the laser beam with respect to its own coordinate system. To do a measurement, the shutter closes, a laser spot appears on it, the camera captures a picture of the laser spot and the coordinates of the laser spot centre are reconstructed in the sensor coordinate system with image processing. Such a measurement requires reference targets on the positioning sensor. To reach the rst objective of the PhD thesis, we used laser theory...

  1. SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.

    Directory of Open Access Journals (Sweden)

    Ruibang Luo

    Full Text Available To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS, most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR on Illumina reads with different lengths. Transcending its predecessor SOAP3, which does not allow gapped alignment, SOAP3-dp by default tolerates alignment similarity as low as 60%. Real data evaluation using human genome demonstrates SOAP3-dp's power to enable more authentic variants and longer Indels to be discovered. Fosmid sequencing shows a 9.1% FDR on newly discovered deletions. SOAP3-dp natively supports BAM file format and provides the same scoring scheme as BWA, which enables it to be integrated into existing analysis pipelines. SOAP3-dp has been deployed on Amazon-EC2, NIH-Biowulf and Tianhe-1A.

  2. Rapid Transfer Alignment of MEMS SINS Based on Adaptive Incremental Kalman Filter

    Directory of Open Access Journals (Sweden)

    Hairong Chu

    2017-01-01

    Full Text Available In airborne MEMS SINS transfer alignment, the error of MEMS IMU is highly environment-dependent and the parameters of the system model are also uncertain, which may lead to large error and bad convergence of the Kalman filter. In order to solve this problem, an improved adaptive incremental Kalman filter (AIKF algorithm is proposed. First, the model of SINS transfer alignment is defined based on the “Velocity and Attitude” matching method. Then the detailed algorithm progress of AIKF and its recurrence formulas are presented. The performance and calculation amount of AKF and AIKF are also compared. Finally, a simulation test is designed to verify the accuracy and the rapidity of the AIKF algorithm by comparing it with KF and AKF. The results show that the AIKF algorithm has better estimation accuracy and shorter convergence time, especially for the bias of the gyroscope and the accelerometer, which can meet the accuracy and rapidity requirement of transfer alignment.

  3. Rapid Transfer Alignment of MEMS SINS Based on Adaptive Incremental Kalman Filter.

    Science.gov (United States)

    Chu, Hairong; Sun, Tingting; Zhang, Baiqiang; Zhang, Hongwei; Chen, Yang

    2017-01-14

    In airborne MEMS SINS transfer alignment, the error of MEMS IMU is highly environment-dependent and the parameters of the system model are also uncertain, which may lead to large error and bad convergence of the Kalman filter. In order to solve this problem, an improved adaptive incremental Kalman filter (AIKF) algorithm is proposed. First, the model of SINS transfer alignment is defined based on the "Velocity and Attitude" matching method. Then the detailed algorithm progress of AIKF and its recurrence formulas are presented. The performance and calculation amount of AKF and AIKF are also compared. Finally, a simulation test is designed to verify the accuracy and the rapidity of the AIKF algorithm by comparing it with KF and AKF. The results show that the AIKF algorithm has better estimation accuracy and shorter convergence time, especially for the bias of the gyroscope and the accelerometer, which can meet the accuracy and rapidity requirement of transfer alignment.

  4. Profile-Based LC-MS data alignment--a Bayesian approach.

    Science.gov (United States)

    Tsai, Tsung-Heng; Tadesse, Mahlet G; Wang, Yue; Ressom, Habtom W

    2013-01-01

    A Bayesian alignment model (BAM) is proposed for alignment of liquid chromatography-mass spectrometry (LC-MS) data. BAM belongs to the category of profile-based approaches, which are composed of two major components: a prototype function and a set of mapping functions. Appropriate estimation of these functions is crucial for good alignment results. BAM uses Markov chain Monte Carlo (MCMC) methods to draw inference on the model parameters and improves on existing MCMC-based alignment methods through 1) the implementation of an efficient MCMC sampler and 2) an adaptive selection of knots. A block Metropolis-Hastings algorithm that mitigates the problem of the MCMC sampler getting stuck at local modes of the posterior distribution is used for the update of the mapping function coefficients. In addition, a stochastic search variable selection (SSVS) methodology is used to determine the number and positions of knots. We applied BAM to a simulated data set, an LC-MS proteomic data set, and two LC-MS metabolomic data sets, and compared its performance with the Bayesian hierarchical curve registration (BHCR) model, the dynamic time-warping (DTW) model, and the continuous profile model (CPM). The advantage of applying appropriate profile-based retention time correction prior to performing a feature-based approach is also demonstrated through the metabolomic data sets.

  5. DOPA: GPU-based protein alignment using database and memory access optimizations

    NARCIS (Netherlands)

    Hasan, L.; Kentie, M.; Al-Ars, Z.

    2011-01-01

    Background Smith-Waterman (S-W) algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for practical purposes. Heuristics based approximate methods like FASTA and BLAST provide faster solutions but at the cost of reduced accurac

  6. Simulation of transition radiation based beam imaging from tilted targets

    Science.gov (United States)

    Sukhikh, L. G.; Kube, G.; Potylitsyn, A. P.

    2017-03-01

    Transverse beam profile diagnostics in linear electron accelerators is usually based on direct imaging of a beam spot via visible transition radiation. In this case the fundamental resolution limit is determined by radiation diffraction in the optical system. A method to measure beam sizes beyond the diffraction limit is to perform imaging dominated by a single-particle function (SPF), i.e. when the recorded image is dominated not by the transverse beam profile but by the image function of a point source (single electron). Knowledge of the SPF for an experimental setup allows one to extract the transverse beam size from an SPF dominated image. This paper presents an approach that allows one to calculate two-dimensional SPF dominated beam images, taking into account the target inclination angle and the depth-of-field effect. In conclusion, a simple fit function for beam size determination in the case under consideration is proposed and its applicability is tested under various conditions.

  7. Multiple sequence alignment using multi-objective based bacterial foraging optimization algorithm.

    Science.gov (United States)

    Rani, R Ranjani; Ramyachitra, D

    2016-12-01

    Multiple sequence alignment (MSA) is a widespread approach in computational biology and bioinformatics. MSA deals with how the sequences of nucleotides and amino acids are sequenced with possible alignment and minimum number of gaps between them, which directs to the functional, evolutionary and structural relationships among the sequences. Still the computation of MSA is a challenging task to provide an efficient accuracy and statistically significant results of alignments. In this work, the Bacterial Foraging Optimization Algorithm was employed to align the biological sequences which resulted in a non-dominated optimal solution. It employs Multi-objective, such as: Maximization of Similarity, Non-gap percentage, Conserved blocks and Minimization of gap penalty. BAliBASE 3.0 benchmark database was utilized to examine the proposed algorithm against other methods In this paper, two algorithms have been proposed: Hybrid Genetic Algorithm with Artificial Bee Colony (GA-ABC) and Bacterial Foraging Optimization Algorithm. It was found that Hybrid Genetic Algorithm with Artificial Bee Colony performed better than the existing optimization algorithms. But still the conserved blocks were not obtained using GA-ABC. Then BFO was used for the alignment and the conserved blocks were obtained. The proposed Multi-Objective Bacterial Foraging Optimization Algorithm (MO-BFO) was compared with widely used MSA methods Clustal Omega, Kalign, MUSCLE, MAFFT, Genetic Algorithm (GA), Ant Colony Optimization (ACO), Artificial Bee Colony (ABC), Particle Swarm Optimization (PSO) and Hybrid Genetic Algorithm with Artificial Bee Colony (GA-ABC). The final results show that the proposed MO-BFO algorithm yields better alignment than most widely used methods.

  8. Beam Position Monitoring at CLIC

    CERN Document Server

    Prochnow, J

    2003-01-01

    At the European Organisation for Nuclear Research CERN in Geneva, Switzerland the design of the Compact LInear Collider (CLIC) for high energy physics is studied. To achieve the envisaged high luminosity the quadrupole magnets and radio-frequency accelerating structures have to be actively aligned with micron precision and submicron resolution. This will be done using beam-based algorithms which rely on beam position information inside of quadrupoles and accelerating structures. After a general introduction to the CLIC study and the alignment algorithms, the concept of the interaction between beams and radio-frequency structures is given. In the next chapter beam measurements and simulations are described which were done to study the performance of cavity beam position monitors (BPM). A BPM design is presented which is compatible with the multi-bunch operation at CLIC and could be used to align the quadrupoles. The beam position inside the accelerating structures will be measured by using the structures thems...

  9. Speckle-metric-optimization-based adaptive optics for laser beam projection and coherent beam combining.

    Science.gov (United States)

    Vorontsov, Mikhail; Weyrauch, Thomas; Lachinova, Svetlana; Gatz, Micah; Carhart, Gary

    2012-07-15

    Maximization of a projected laser beam's power density at a remotely located extended object (speckle target) can be achieved by using an adaptive optics (AO) technique based on sensing and optimization of the target-return speckle field's statistical characteristics, referred to here as speckle metrics (SM). SM AO was demonstrated in a target-in-the-loop coherent beam combining experiment using a bistatic laser beam projection system composed of a coherent fiber-array transmitter and a power-in-the-bucket receiver. SM sensing utilized a 50 MHz rate dithering of the projected beam that provided a stair-mode approximation of the outgoing combined beam's wavefront tip and tilt with subaperture piston phases. Fiber-integrated phase shifters were used for both the dithering and SM optimization with stochastic parallel gradient descent control.

  10. Video-based beam position monitoring at CHESS

    Science.gov (United States)

    Revesz, Peter; Pauling, Alan; Krawczyk, Thomas; Kelly, Kevin J.

    2012-10-01

    CHESS has pioneered the development of X-ray Video Beam Position Monitors (VBPMs). Unlike traditional photoelectron beam position monitors that rely on photoelectrons generated by the fringe edges of the X-ray beam, with VBPMs we collect information from the whole cross-section of the X-ray beam. VBPMs can also give real-time shape/size information. We have developed three types of VBPMs: (1) VBPMs based on helium luminescence from the intense white X-ray beam. In this case the CCD camera is viewing the luminescence from the side. (2) VBPMs based on luminescence of a thin (~50 micron) CVD diamond sheet as the white beam passes through it. The CCD camera is placed outside the beam line vacuum and views the diamond fluorescence through a viewport. (3) Scatter-based VBPMs. In this case the white X-ray beam passes through a thin graphite filter or Be window. The scattered X-rays create an image of the beam's footprint on an X-ray sensitive fluorescent screen using a slit placed outside the beam line vacuum. For all VBPMs we use relatively inexpensive 1.3 Mega-pixel CCD cameras connected via USB to a Windows host for image acquisition and analysis. The VBPM host computers are networked and provide live images of the beam and streams of data about the beam position, profile and intensity to CHESS's signal logging system and to the CHESS operator. The operational use of VBPMs showed great advantage over the traditional BPMs by providing direct visual input for the CHESS operator. The VBPM precision in most cases is on the order of ~0.1 micron. On the down side, the data acquisition frequency (50-1000ms) is inferior to the photoelectron based BPMs. In the future with the use of more expensive fast cameras we will be able create VBPMs working in the few hundreds Hz scale.

  11. Sequence Alignment with Dynamic Divisor Generation for Keystroke Dynamics Based User Authentication

    OpenAIRE

    Jiacang Ho; Dae-Ki Kang

    2015-01-01

    Keystroke dynamics based authentication is one of the prevention mechanisms used to protect one’s account from criminals’ illegal access. In this authentication mechanism, keystroke dynamics are used to capture patterns in a user typing behavior. Sequence alignment is shown to be one of effective algorithms for keystroke dynamics based authentication, by comparing the sequences of keystroke data to detect imposter’s anomalous sequences. In previous research, static divisor has been used for s...

  12. Method for automatization of the alignment of a laboratory based x-ray phase contrast edge illumination system.

    Science.gov (United States)

    Millard, T P; Endrizzi, M; Ignatyev, K; Hagen, C K; Munro, P R T; Speller, R D; Olivo, A

    2013-08-01

    Here we present a general alignment algorithm for an edge illumination x-ray phase contrast imaging system, which is used with the laboratory systems developed at UCL. It has the flexibility to be used with all current mask designs, and could also be applied to future synchrotron based systems. The algorithm has proved to be robust experimentally, and can be used for the automatization of future commercial systems through automatic alignment and alignment correction.

  13. Demodulation for multi vortex beams based on composite diffraction hologram

    Science.gov (United States)

    Zhang, Weibin; Li, Yingchun; Sun, Tengfen; Shao, Wei; Zhu, Fuquan; Wang, YingYing

    2016-12-01

    While projecting a Gaussian beam onto the spatial light modulator (SLM) which has loaded a composite hologram, several vortex beams can be generated at one time. On the contrary, while projecting the corresponding vortex beam onto the hologram, the Gaussian beam can be restored, realizing the demodulation of vortex beam. In traditional optical communication systems, a hologram can only demodulate one incident vortex beam. In this paper, a vortex beam demodulation method based on composite diffraction hologram is proposed, which can demodulate several incident vortex beams with only one hologram. An experimental system is set up in this paper which achieves the generation, transmission and demodulation experiments of vortex beams with 64QAM-OFDM signals. After a series of offline processing on the demodulated Gaussian beam, constellation and bit error rates (BER) of each subcarrier for OFDM signals are acquired. The experimental results show that good system performance can be achieved with this method as the BERs of all subcarriers are under the FEC threshold.

  14. Extended particle-based simulation for magnetic-aligned compaction of hard magnetic particles

    Energy Technology Data Exchange (ETDEWEB)

    Soda, Rikio; Takagi, Kenta; Ozaki, Kimihiro, E-mail: r-soda@aist.go.jp

    2015-12-15

    In order to understand the magnetic-aligned compaction process, we develop a three-dimensional (3D) discrete element method for simulating the motion of hard magnetic particles subjected to strong compression and magnetic fields. The proposed simulation model also considers the exact magnetic force involved via the calculation of the magnetic moment. First, to validate the simulation model, single-action compaction in the absence of a magnetic field was calculated. The calculated compaction curves are in good quantitative agreement with experimental ones. Based on this simulation model, the alignment behavior of Nd–Fe–B particles during compression under the application of a static magnetic field. The developed simulation model enables the visualization of particle behavior including the misorientation of the magnetization easy axis, which provided the quantitative relationships between applied pressure and particle misorientation. - Highlights: • A practical 3D DEM simulation technique for magnetic-aligned compaction was developed. • An extended simulation model was introduced for hard magnetic particles. • Magnetic-aligned compaction was simulated using the developed simulation model.

  15. Track based alignment of the CMS silicon tracker and its implication on physics performance

    Energy Technology Data Exchange (ETDEWEB)

    Draeger, Jula

    2011-08-15

    In order to fully exploit the discovery potential of the CMS detector for new physics beyond the Standard Model at the high luminosity and centre-of-mass energy provided by the Large Hadron Collider, a careful calibration of the detector and profound understanding of its impact on physics performance are necessary to provide realistic uncertainties for the measurements of physics processes. This thesis describes the track-based alignment of the inner tracking system of CMS with the Millepede II algorithm. Using the combined information of tracks from cosmic rays and collisions taken in 2010, a remarkable local alignment precision has been reached that meets the design specification for most regions of the detector and takes into account instabilities of the detector geometry over time. In addition, the impact of the alignment of b tagging or the Z boson resonance are investigated. The latter is studied to investigate the impact of correlated detector distortions which hardly influence the overall solution of the minimisation problem but introduce biases in the track parameters and thus the derived physics quantities. The determination and constraint of these weak modes present the future challenge of the alignment task at CMS. (orig.)

  16. Digital Beam Deflectors Based Partly on Liquid Crystals

    Science.gov (United States)

    Pouch, John J.; Miranda, Felix A.; Kreminska, Liubov; Pishnyak, Oleg; Golovin, Andrii; Winker, Bruce K.

    2007-01-01

    A digital beam deflector based partly on liquid crystals has been demonstrated as a prototype of a class of optical beam-steering devices that contain no mechanical actuators or solid moving parts. Such beam-steering devices could be useful in a variety of applications, including free-space optical communications, switching in fiber-optic communications, general optical switching, and optical scanning. Liquid crystals are of special interest as active materials in nonmechanical beam steerers and deflectors because of their structural flexibility, low operating voltages, and the relatively low costs of fabrication of devices that contain them.

  17. Simulation based analysis of laser beam brazing

    Science.gov (United States)

    Dobler, Michael; Wiethop, Philipp; Schmid, Daniel; Schmidt, Michael

    2016-03-01

    Laser beam brazing is a well-established joining technology in car body manufacturing with main applications in the joining of divided tailgates and the joining of roof and side panels. A key advantage of laser brazed joints is the seam's visual quality which satisfies highest requirements. However, the laser beam brazing process is very complex and process dynamics are only partially understood. In order to gain deeper knowledge of the laser beam brazing process, to determine optimal process parameters and to test process variants, a transient three-dimensional simulation model of laser beam brazing is developed. This model takes into account energy input, heat transfer as well as fluid and wetting dynamics that lead to the formation of the brazing seam. A validation of the simulation model is performed by metallographic analysis and thermocouple measurements for different parameter sets of the brazing process. These results show that the multi-physical simulation model not only can be used to gain insight into the laser brazing process but also offers the possibility of process optimization in industrial applications. The model's capabilities in determining optimal process parameters are exemplarily shown for the laser power. Small deviations in the energy input can affect the brazing results significantly. Therefore, the simulation model is used to analyze the effect of the lateral laser beam position on the energy input and the resulting brazing seam.

  18. A piezoelectric vibration harvester based on clamped-guided beams

    NARCIS (Netherlands)

    Wang, Z.; Matova, S.; Elfrink, R.; Jambunathan, M.; Nooijer, C. de; Schaijk, R. van; Vullers, R.J.M.

    2012-01-01

    The paper addresses the design, modeling, fabrication and experimental results of a piezoelectric energy harvester based on clamped-guided beams. The design is featured by shorter mass displacement and higher reliability than cantilever beams. Two separate sets of capacitors allow exploiting both te

  19. Beam-driven, Plasma-based Particle Accelerators

    CERN Document Server

    Muggli, P

    2016-01-01

    We briefly give some of the characteristics of the beam-driven, plasma-based particle accelerator known as the plasma wakefield accelerator (PWFA). We also mention some of the major results that have been obtained since the birth of the concept. We focus on high-energy particle beams where possible.

  20. Beam Parameters Measurement Based On Tv Methods

    CERN Document Server

    Klimenkov, E; Milichenko, Yu; Voevodin, V

    2004-01-01

    The paper describes hardware and software used to control TV-cameras and to process TV-images of luminescent screens placed along the beam transfer lines. Industrial devices manually control the movements and focusing of the cameras. All devices are linked to PC via PCI interfaces with homemade drivers for Linux OS and provide both selection of camera and digitizing of video signal synchronized with beam. One part of software provides means to set initial parameters using PC consol. Thus an operator can choose contrast, brightness, some number of significant points on TV-image to calculate beam position and its size. Second part supports remote TV controls and data processing from Control Rooms of U-70 complex using set initial parameters. First experience and results of the method realization are discussed.

  1. Automatic learning-based beam angle selection for thoracic IMRT

    Energy Technology Data Exchange (ETDEWEB)

    Amit, Guy; Marshall, Andrea [Radiation Medicine Program, Princess Margaret Cancer Centre, Toronto, Ontario M5G 2M9 (Canada); Purdie, Thomas G., E-mail: tom.purdie@rmp.uhn.ca; Jaffray, David A. [Radiation Medicine Program, Princess Margaret Cancer Centre, Toronto, Ontario M5G 2M9 (Canada); Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 3E2 (Canada); Techna Institute, University Health Network, Toronto, Ontario M5G 1P5 (Canada); Levinshtein, Alex [Department of Computer Science, University of Toronto, Toronto, Ontario M5S 3G4 (Canada); Hope, Andrew J.; Lindsay, Patricia [Radiation Medicine Program, Princess Margaret Cancer Centre, Toronto, Ontario M5G 2M9, Canada and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5S 3E2 (Canada); Pekar, Vladimir [Philips Healthcare, Markham, Ontario L6C 2S3 (Canada)

    2015-04-15

    Purpose: The treatment of thoracic cancer using external beam radiation requires an optimal selection of the radiation beam directions to ensure effective coverage of the target volume and to avoid unnecessary treatment of normal healthy tissues. Intensity modulated radiation therapy (IMRT) planning is a lengthy process, which requires the planner to iterate between choosing beam angles, specifying dose–volume objectives and executing IMRT optimization. In thorax treatment planning, where there are no class solutions for beam placement, beam angle selection is performed manually, based on the planner’s clinical experience. The purpose of this work is to propose and study a computationally efficient framework that utilizes machine learning to automatically select treatment beam angles. Such a framework may be helpful for reducing the overall planning workload. Methods: The authors introduce an automated beam selection method, based on learning the relationships between beam angles and anatomical features. Using a large set of clinically approved IMRT plans, a random forest regression algorithm is trained to map a multitude of anatomical features into an individual beam score. An optimization scheme is then built to select and adjust the beam angles, considering the learned interbeam dependencies. The validity and quality of the automatically selected beams evaluated using the manually selected beams from the corresponding clinical plans as the ground truth. Results: The analysis included 149 clinically approved thoracic IMRT plans. For a randomly selected test subset of 27 plans, IMRT plans were generated using automatically selected beams and compared to the clinical plans. The comparison of the predicted and the clinical beam angles demonstrated a good average correspondence between the two (angular distance 16.8° ± 10°, correlation 0.75 ± 0.2). The dose distributions of the semiautomatic and clinical plans were equivalent in terms of primary target volume

  2. On the Feasibility of Precoding-Based Network Alignment for Three Unicast Sessions

    CERN Document Server

    Meng, Chun; Markopoulou, Athina; Jafar, Syed Ali

    2012-01-01

    We consider the problem of network coding across three unicast sessions over a directed acyclic graph, when each session has min-cut one. Previous work by Das et al. adapted a precoding-based interference alignment technique, originally developed for the wireless interference channel, specifically to this problem. We refer to this approach as precoding-based network alignment (PBNA). Similar to the wireless setting, PBNA asymptotically achieves half the minimum cut; different from the wireless setting, its feasibility depends on the graph structure. Das et al. provided a set of feasibility conditions for PBNA with respect to a particular precoding matrix. However, the set consisted of an infinite number of conditions, which is impossible to check in practice. Furthermore, the conditions were purely algebraic, without interpretation with regards to the graph structure. In this paper, we first prove that the set of conditions provided by Das. et al are also necessary for the feasibility of PBNA with respect to ...

  3. Alignment Condition-Based Robust Adaptive Iterative Learning Control of Uncertain Robot System

    Directory of Open Access Journals (Sweden)

    Guofeng Tong

    2014-04-01

    Full Text Available This paper proposes an adaptive iterative learning control strategy integrated with saturation-based robust control for uncertain robot system in presence of modelling uncertainties, unknown parameter, and external disturbance under alignment condition. An important merit is that it achieves adaptive switching of gain matrix both in conventional PD-type feedforward control and robust adaptive control in the iteration domain simultaneously. The analysis of convergence of proposed control law is based on Lyapunov's direct method under alignment initial condition. Simulation results demonstrate the faster learning rate and better robust performance with proposed algorithm by comparing with other existing robust controllers. The actual experiment on three-DOF robot manipulator shows its better practical effectiveness.

  4. Beam Loss Diagnostics Based on Pressure Measurements

    CERN Document Server

    Weinrich, U

    2003-01-01

    The GSI is operating a heavy ion synchrotron, which is currently undergoing an upgrade towards higher beam intensities. It was discovered that beam losses induce a significant pressure increase in the vacuum system. In order to detect the time constants of the pressure increase and decrease, fast total pressure measurements were put into operation. With the recently installed partial pressure diagnostics it is also possible to follow up which types of molecules are released. The presentation will focus on the different techniques applied as well as on some measurement results. The potential and difficulties of this diagnostic tool will also be discussed.

  5. Shafting Alignment Calculation Based on APDL%基于APDL的轴系校中计算

    Institute of Scientific and Technical Information of China (English)

    张兴涛; 蒋岚岚

    2012-01-01

    本文介绍了轴系合理校中的必要性以及基于APDL的校中计算方法,并通过对比计算结果,说明该计算方法是完全适用的。%This paper introduces the necessity of shafting alignment and the calculation method based on APDL. By comparing the calculation results, it is proved that the method is completely applicable.

  6. First Experiences of Beam Presence Detection Based on Dedicated Beam Position Monitors

    CERN Document Server

    Jalal, A; Gasior, M; Todd, B

    2011-01-01

    High intensity particle beam injection into the LHC is only permitted when a low intensity pilot beam is already circulating in the LHC. This requirement addresses some of the risks associated with high intensity injection, and is enforced by a so-called Beam Presence Flag (BPF) system which is part of the interlock chain between the LHC and its injector complex. For the 2010 LHC run, the detection of the presence of this pilot beam was implemented using the LHC Fast Beam Current Transformer (FBCT) system. However, the primary function of the FBCTs, that is reliable measurement of beam currents, did not allow the BPF system to satisfy all quality requirements of the LHC Machine Protection System (MPS). Safety requirements associated with high intensity injections triggered the development of a dedicated system, based on Beam Position Monitors (BPM). This system was meant to work first in parallel with the FBCT BPF system and eventually replace it. At the end of 2010 and in 2011, this new BP...

  7. Some aspects of SR beamline alignment

    Energy Technology Data Exchange (ETDEWEB)

    Gaponov, Yu.A., E-mail: Yury.Gaponov@maxlab.lu.se [MAX-lab, Lund University, P.O.B. 118, SE-221 00 Lund (Sweden); Cerenius, Y. [MAX-lab, Lund University, P.O.B. 118, SE-221 00 Lund (Sweden); Nygaard, J. [Faculty of Life Sciences, University of Copenhagen, DK-1871 Frederiksberg C (Denmark); Ursby, T.; Larsson, K. [MAX-lab, Lund University, P.O.B. 118, SE-221 00 Lund (Sweden)

    2011-09-01

    Based on the Synchrotron Radiation (SR) beamline optical element-by-element alignment with analysis of the alignment results an optimized beamline alignment algorithm has been designed and developed. The alignment procedures have been designed and developed for the MAX-lab I911-4 fixed energy beamline. It has been shown that the intermediate information received during the monochromator alignment stage can be used for the correction of both monochromator and mirror without the next stages of alignment of mirror, slits, sample holder, etc. Such an optimization of the beamline alignment procedures decreases the time necessary for the alignment and becomes useful and helpful in the case of any instability of the beamline optical elements, storage ring electron orbit or the wiggler insertion device, which could result in the instability of angular and positional parameters of the SR beam. A general purpose software package for manual, semi-automatic and automatic SR beamline alignment has been designed and developed using the developed algorithm. The TANGO control system is used as the middle-ware between the stand-alone beamline control applications BLTools, BPMonitor and the beamline equipment.

  8. Vortex beam based more stable annular laser guide star

    Science.gov (United States)

    Luo, Ruiyao; Cui, Wenda; Li, Lei; Sun, Quan; He, Yulong; Wang, Hongyan; Ning, Yu; Xu, Xiaojun

    2016-11-01

    We present an annular laser guide star (LGS) concept for large ground-based telescopes in this paper. The more stable annular LGS is generated by turbulence-resisted vortex beam. In the uplink, a vortex beam tends to wander more slightly than a Gaussian beam does in atmospheric turbulence. This may enable an annular LGS to wander more slightly than a traditional Gaussian beam generated LGS does, which would ease the burden of uplink tip-tilt mirror and benefit a dynamical closed-loop adaptive optics system. We conducted numerical simulation to validate the feasibility of this concept. And we have gotten 31% reduced variance of spot wandering of annular LGS. Besides, we set up a spatial light modulator based laser guide star simulator for beam propagation in turbulent atmosphere to experimentally test the annular LGS concept. Preliminary experimental results are given. To the best of our knowledge, it is the first time this concept is formulated.

  9. An Electron Beam Profile Instrument Based on FBGs

    Directory of Open Access Journals (Sweden)

    Dan Sporea

    2014-08-01

    Full Text Available Along with the dose rate and the total irradiation dose measurements, the knowledge of the beam localization and the beam profile/energy distribution in the beam are parameters of interest for charged particle accelerator installations when they are used in scientific investigations, industrial applications or medical treatments. The transverse profile of the beam, its position, its centroid location, and its focus or flatness depend on the instrument operating conditions or on the beam exit setup. Proof-of-concept of a new type of charged particle beam diagnostics based on fiber Bragg gratings (FBGs was demonstrated. Its operating principle relies on the measurement of the peak wavelength changes for an array of FBG sensors as function of the temperature following the exposure to an electron beam. Periodically, the sensor irradiation is stopped and the FBG are force cooled to a reference temperature with which the temperature influencing each sensor during beam exposure is compared. Commercially available FBGs, and FBGs written in radiation resistant optical fibers, were tested under electron beam irradiation in order to study their possible use in this application.

  10. Remote sensing of local structure of the quasi-perpendicular Earth's bow shock by using field-aligned beams

    Directory of Open Access Journals (Sweden)

    B. Miao

    2009-03-01

    Full Text Available Field-aligned ion beams (FABs originate at the quasi-perpendicular Earth's bow shock and constitute an important ion population in the foreshock region. The bulk velocity of these FABs depends significantly on the shock normal angle, which is the angle between shock normal and upstream interplanetary magnetic field (IMF. This dependency may therefore be taken as an indicator of the local structure of the shock. Applying the direct reflection model to Cluster measurements, we have developed a method that uses proton FABs in the foreshock region for remote sensing of the local shock structure. The comparison of the model results with the multi-spacecraft observations of FAB events shows very good agreement in terms of wave amplitude and frequency of surface waves at the shock front.

  11. Performance and perspectives of the diamond based Beam Condition Monitor for beam loss monitoring at CMS

    CERN Document Server

    AUTHOR|(CDS)2080862

    2015-01-01

    At CMS, a beam loss monitoring system is operated to protect the silicon detectors from high particle rates, arising from intense beam loss events. As detectors, poly-crystalline CVD diamond sensors are placed around the beam pipe at several locations inside CMS. In case of extremely high detector currents, the LHC beams are automatically extracted from the LHC rings.Diamond is the detector material of choice due to its radiation hardness. Predictions of the detector lifetime were made based on FLUKA monte-carlo simulations and irradiation test results from the RD42 collaboration, which attested no significant radiation damage over several years.During the LHC operational Run1 (2010 â?? 2013), the detector efficiencies were monitored. A signal decrease of about 50 times stronger than expectations was observed in the in-situ radiation environment. Electric field deformations due to charge carriers, trapped in radiation induced lattice defects, are responsible for this signal decrease. This so-called polarizat...

  12. Vibrating wire alignment technique

    CERN Document Server

    Xiao-Long, Wang; lei, Wu; Chun-Hua, Li

    2013-01-01

    Vibrating wire alignment technique is a kind of method which through measuring the spatial distribution of magnetic field to do the alignment and it can achieve very high alignment accuracy. Vibrating wire alignment technique can be applied for magnet fiducialization and accelerator straight section components alignment, it is a necessary supplement for conventional alignment method. This article will systematically expound the international research achievements of vibrating wire alignment technique, including vibrating wire model analysis, system frequency calculation, wire sag calculation and the relation between wire amplitude and magnetic induction intensity. On the basis of model analysis this article will introduce the alignment method which based on magnetic field measurement and the alignment method which based on amplitude and phase measurement. Finally, some basic questions will be discussed and the solutions will be given.

  13. Value-based insurance design: aligning incentives and evidence in pulmonary medicine.

    Science.gov (United States)

    Fendrick, A Mark; Zank, Daniel C

    2013-11-01

    When consumers are required to pay the same out-of-pocket amount for pulmonary services for which clinical benefits depend on patient characteristics, clinical indication, and provider choice, there is an enormous potential for both underutilization and overutilization. Unlike most current one-size-fits-all health plan designs, value-based insurance design (V-BID) explicitly acknowledges clinical heterogeneity across the continuum of care. By adding clinical nuance to benefit design, V-BID seeks to align consumer and provider incentives with value, encouraging the use of high-value services and discouraging the use of low-value interventions. This article describes the concept of V-BID; creates a framework for its development in pulmonary medicine; and outlines how this concept aligns with research, care delivery, and payment reform initiatives.

  14. Sequence Alignment with Dynamic Divisor Generation for Keystroke Dynamics Based User Authentication

    Directory of Open Access Journals (Sweden)

    Jiacang Ho

    2015-01-01

    Full Text Available Keystroke dynamics based authentication is one of the prevention mechanisms used to protect one’s account from criminals’ illegal access. In this authentication mechanism, keystroke dynamics are used to capture patterns in a user typing behavior. Sequence alignment is shown to be one of effective algorithms for keystroke dynamics based authentication, by comparing the sequences of keystroke data to detect imposter’s anomalous sequences. In previous research, static divisor has been used for sequence generation from the keystroke data, which is a number used to divide a time difference of keystroke data into an equal-length subinterval. After the division, the subintervals are mapped to alphabet letters to form sequences. One major drawback of this static divisor is that the amount of data for this subinterval generation is often insufficient, which leads to premature termination of subinterval generation and consequently causes inaccurate sequence alignment. To alleviate this problem, we introduce sequence alignment of dynamic divisor (SADD in this paper. In SADD, we use mean of Horner’s rule technique to generate dynamic divisors and apply them to produce the subintervals with different length. The comparative experimental results with SADD and other existing algorithms indicate that SADD is usually comparable to and often outperforms other existing algorithms.

  15. A Point Cloud Alignment Algorithm Based on Stereo Vision Using Random Pattern Projection

    Directory of Open Access Journals (Sweden)

    Chen-Sheng Chen

    2016-03-01

    Full Text Available This paper proposes a point cloud alignment algorithm based on stereo vision using Random Pattern Projection (RPP. In the application of stereo vision, it is rather difficult to find correspondences between stereo images of texture-less objects. To overcome this issue, RPP is used to enhance the object’s features, thus increasing the accuracy of the identified correspondences of the stereo images. In the 3D alignment algorithm, the down sample technique is used to filter out the outliers of the point cloud data to improve system efficiency. Furthermore, the extracted features of the down sample point cloud data were applied in the matching process. Finally, the object’s pose was estimated by the alignment algorithm based on object features. In experiments, the maximum error and standard deviation of rotation are respectively about 0.031°and 0.199°, while the maximum error and standard deviation of translation are respectively about 0.565 mm and 0.902 mm . The execution time for pose estimation is about 230ms.

  16. High-accuracy alignment based on atmospherical dispersion - technological approaches and solutions for the dual-wavelength transmitter

    Energy Technology Data Exchange (ETDEWEB)

    Burkhard, Boeckem [Institute for Geodesy and Photogrammetry, ETH Zurich (Switzerland)

    1999-07-01

    In the course of the progressive developments of sophisticated geodetic systems utilizing electromagnetic waves in the visible or near IR-range a more detailed knowledge of the propagation medium and coevally solutions of atmospherically induced limitations will become important. An alignment system based on atmospherical dispersion, called a dispersometer, is a metrological solution to the atmospherically induced limitations, in optical alignment and direction observations of high accuracy. In the dispersometer we are using the dual-wavelength method for dispersive air to obtain refraction compensated angle measurements, the detrimental impact of atmospheric turbulence notwithstanding. The principle of the dual-wavelength method utilizes atmospherical dispersion, i.e. the wavelength dependence of the refractive index. The difference angle between two light beams of different wavelengths, which is called the dispersion angle {delta}{beta}, is to first approximation proportional to the refraction angle: {beta}{sub IR} {nu}({beta}{sub blue} - {beta}{sub IR}) = {nu} {delta}{beta}, this equation implies that the dispersion angle has to be measured at least 42 times more accurate than the desired accuracy of the refraction angle for the wavelengths used in the present dispersometer. This required accuracy constitutes one major difficulty for the instrumental performance in applying the dispersion effect. However, the dual-wavelength method can only be successfully used in an optimized transmitter-receiver combination. Beyond the above mentioned resolution requirement for the detector, major difficulties in instrumental realization arise in the availability of a suitable dual-wavelength laser light source, laser light modulation with a very high extinction ratio and coaxial emittance of mono-mode radiation at both wavelengths. Therefore, this paper focuses on the solutions of the dual-wavelength transmitter introducing a new hardware approach and a complete re-design of

  17. CCD based beam loss monitor for ion accelerators

    Science.gov (United States)

    Belousov, A.; Mustafin, E.; Ensinger, W.

    2014-04-01

    Beam loss monitoring is an important aspect of proper accelerator functioning. There is a variety of existing solutions, but each has its own disadvantages, e.g. unsuitable dynamic range or time resolution, high cost, or short lifetime. Therefore, new options are looked for. This paper shows a method of application of a charge-coupled device (CCD) video camera as a beam loss monitor (BLM) for ion beam accelerators. The system was tested with a 500 MeV/u N+7 ion beam interacting with an aluminum target. The algorithms of camera signal processing with LabView based code and beam loss measurement are explained. Limits of applicability of this monitor system are discussed.

  18. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and J. Pivarski

    2011-01-01

    Alignment efforts in the first few months of 2011 have shifted away from providing alignment constants (now a well established procedure) and focussed on some critical remaining issues. The single most important task left was to understand the systematic differences observed between the track-based (TB) and hardware-based (HW) barrel alignments: a systematic difference in r-φ and in z, which grew as a function of z, and which amounted to ~4-5 mm differences going from one end of the barrel to the other. This difference is now understood to be caused by the tracker alignment. The systematic differences disappear when the track-based barrel alignment is performed using the new “twist-free” tracker alignment. This removes the largest remaining source of systematic uncertainty. Since the barrel alignment is based on hardware, it does not suffer from the tracker twist. However, untwisting the tracker causes endcap disks (which are aligned ...

  19. Performance based design of reinforced concrete beams under impact

    Directory of Open Access Journals (Sweden)

    S. Tachibana

    2010-06-01

    Full Text Available The purpose of this research is to collect fundamental data and to establish a performance-based design method for reinforced concrete beams under perpendicular impact load.

    Series of low speed impact experiments using reinforced concrete beams were performed varying span length, cross section and main reinforcement.

    The experimental results are evaluated focusing on the impact load characteristics and the impact behaviours of reinforced concrete beams. Various characteristic values and their relationships are investigated such as the collision energy, the impact force duration, the energy absorbed by the beams and the beam response values. Also the bending performance of the reinforced concrete beams against perpendicular impact is evaluated.

    An equation is proposed to estimate the maximum displacement of the beam based on the collision energy and the static ultimate bending strength. The validity of the proposed equation is confirmed by comparison with experimental results obtained by other researchers as well as numerical results obtained by FEM simulations. The proposed equation allows for a performance based design of the structure accounting for the actual deformation due to the expected impact action.

  20. Functionally informed cortex based alignment: an integrated approach for whole-cortex macro-anatomical and ROI-based functional alignment.

    Science.gov (United States)

    Frost, Martin A; Goebel, Rainer

    2013-12-01

    Due to anatomical variability across subjects many brain mapping experiments have analysis focused on a few particular regions of interest so as to circumvent the problem of sub-optimal statistics resulting from the lack of anatomical correspondence across subjects. Since the topographic distribution of experimental effects across the cortex is also often of interest, two separate analyses are often conducted, one on the regions of interest alone, as well as a separate 'whole brain' analysis with sub-optimal spatial correspondence across brains. In this paper we present a new group alignment procedure which incorporates, from each subject, both macro-anatomical (curvature) information and functional information from standard localizer experiments. After specifying appropriate parameters to weight anatomical and functional alignment forces, we were able to create a group cortical reconstruction which was well aligned in terms of both anatomical and functional areas. We observed an increase in the overlap of functional areas as well as an improvement in group statistics following this integrated alignment procedure. We propose that, using this alignment scheme, two separate analyses may not be necessary as both analyses can be integrated into a single procedure. After an integrated structural and functional alignment one is able to carry out a whole brain analysis with improved statistical sensitivity due to the reduction in spatial variation in the location of functional regions of interest which fCBA accomplishes. Furthermore, regions in the vicinity of localised and aligned regions-of-interest will also benefit from the integrated alignment.

  1. Novel information theory based method for superimposition of lateral head radiographs and cone beam computed tomography images

    Science.gov (United States)

    Jacquet, W; Nyssen, E; Bottenberg, P; de Groen, P; Vande Vannet, B

    2010-01-01

    Objectives The aim was to introduce a novel alignment criterion, focus mutual information (FMI), for the superimposition of lateral cephalometric radiographs and three dimensional (3D) cone beam computed images as well as the assessment of the alignment characteristics of the new method and comparison of the novel methodology with the region of interest (ROI) approach. Methods Implementation of a FMI criterion-based methodology that only requires the approximate indication of stable structures in one single image. The robustness of the method was first addressed in a phantom experiment comparing the new technique with a ROI approach. Two consecutive cephalometric radiographs were then obtained, one before and one after functional twin block application. These images were then superimposed using alignment by FMI where the following were focused on, in several ways: (1) cranial base and acoustic meatus, (2) palatal plane and (3) mandibular symphysis. The superimposed images were subtracted and coloured. The applicability to cone beam CT (CBCT) is illustrated by the alignment of CBCT images acquired before and after craniofacial surgery. Results The phantom experiment clearly shows superior alignment when compared to the ROI approach (Wilcoxon n = 17, Z = −3.290, and P = 0.001), and robustness with respect to the choice of parameters (one-sample t-test n = 50, t = −12.355, and P = 0.000). The treatment effects are revealed clearly in the subtraction image of well-aligned cephalometric radiographs. The colouring scheme of the subtraction image emphasises the areas of change and visualizes the remodelling of the soft tissue. Conclusions FMI allows for cephalometry without tracing, it avoids the error inherent to the use of landmarks and the interaction of the practitioner is kept to a minimum. The robustness to focal distribution variations limits the influence of possible examiner inaccuracy. PMID:20395459

  2. Registration algorithm for sensor alignment based on stochastic fuzzy neural network

    Institute of Scientific and Technical Information of China (English)

    Li Jiao; Jing Zhongliang; He Jiaona; Wang An

    2005-01-01

    Multiple sensor registration is an important link in multi-sensors data fusion. The existed algorithm is all based on the assumption that system errors come from a fixed deviation set. But there are many other factors, which can result system errors. So traditional registration algorithms have limitation. This paper presents a registration algorithm for sensor alignment based on stochastic fuzzy neural network (SNFF), and utilized fuzzy clustering algorithm obtaining the number of fuzzy rules. Finally, the simulative result illuminate that this way could gain a satisfing result.

  3. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez.

    Since June of 2009, the muon alignment group has focused on providing new alignment constants and on finalizing the hardware alignment reconstruction. Alignment constants for DTs and CSCs were provided for CRAFT09 data reprocessing. For DT chambers, the track-based alignment was repeated using CRAFT09 cosmic ray muons and validated using segment extrapolation and split cosmic tools. One difference with respect to the previous alignment is that only five degrees of freedom were aligned, leaving the rotation around the local x-axis to be better determined by the hardware system. Similarly, DT chambers poorly aligned by tracks (due to limited statistics) were aligned by a combination of photogrammetry and hardware-based alignment. For the CSC chambers, the hardware system provided alignment in global z and rotations about local x. Entire muon endcap rings were further corrected in the transverse plane (global x and y) by the track-based alignment. Single chamber track-based alignment suffers from poor statistic...

  4. Sequence Comparison Alignment-Free Approach Based on Suffix Tree and L-Words Frequency

    Directory of Open Access Journals (Sweden)

    Inês Soares

    2012-01-01

    Full Text Available The vast majority of methods available for sequence comparison rely on a first sequence alignment step, which requires a number of assumptions on evolutionary history and is sometimes very difficult or impossible to perform due to the abundance of gaps (insertions/deletions. In such cases, an alternative alignment-free method would prove valuable. Our method starts by a computation of a generalized suffix tree of all sequences, which is completed in linear time. Using this tree, the frequency of all possible words with a preset length L—L-words—in each sequence is rapidly calculated. Based on the L-words frequency profile of each sequence, a pairwise standard Euclidean distance is then computed producing a symmetric genetic distance matrix, which can be used to generate a neighbor joining dendrogram or a multidimensional scaling graph. We present an improvement to word counting alignment-free approaches for sequence comparison, by determining a single optimal word length and combining suffix tree structures to the word counting tasks. Our approach is, thus, a fast and simple application that proved to be efficient and powerful when applied to mitochondrial genomes. The algorithm was implemented in Python language and is freely available on the web.

  5. A scheme for multiple sequence alignment optimization--an improvement based on family representative mechanics features.

    Science.gov (United States)

    Liu, Xin; Zhao, Ya-Pu

    2009-12-21

    As a basic tool of modern biology, sequence alignment can provide us useful information in fold, function, and active site of protein. For many cases, the increased quality of sequence alignment means a better performance. The motivation of present work is to increase ability of the existing scoring scheme/algorithm by considering residue-residue correlations better. Based on a coarse-grained approach, the hydrophobic force between each pair of residues is written out from protein sequence. It results in the construction of an intramolecular hydrophobic force network that describes the whole residue-residue interactions of each protein molecule, and characterizes protein's biological properties in the hydrophobic aspect. A former work has suggested that such network can characterize the top weighted feature regarding hydrophobicity. Moreover, for each homologous protein of a family, the corresponding network shares some common and representative family characters that eventually govern the conservation of biological properties during protein evolution. In present work, we score such family representative characters of a protein by the deviation of its intramolecular hydrophobic force network from that of background. Such score can assist the existing scoring schemes/algorithms, and boost up the ability of multiple sequences alignment, e.g. achieving a prominent increase (approximately 50%) in searching the structurally alike residue segments at a low identity level. As the theoretical basis is different, the present scheme can assist most existing algorithms, and improve their efficiency remarkably.

  6. Improvement of the CMS Muon Reconstruction Performance due to Precise Track-based Alignment

    Science.gov (United States)

    Brown, Malachi

    2017-01-01

    The performance of the CMS muon system depends on a precise knowledge of the positions and orientations of all its elements. The muon tracks reconstructed in proton-proton collision data at the LHC are used to align the individual muon detectors with respect to the inner silicon tracker. The alignment procedure measures these positions and provides geometries of the muon system that must be validated to ensure the performance of the detectors. In this report we present a set of sophisticated validation tools, developed to test the accuracy of a given muon system geometry with data from collisions. The validation procedure uses events with pairs of muons from Z-boson decays and events with very high pT muons, in order to quantify the reconstruction performance of the muon system for a given geometry. Kinematic properties of muons reconstructed using information from the muon system are compared to the properties of muons built using information from the tracker. We demonstrate improvements of the muon reconstruction performance after track-based alignment procedures are performed with 2016 data.

  7. Proton-beam writing channel based on an electrostatic accelerator

    Science.gov (United States)

    Lapin, A. S.; Rebrov, V. A.; Kolin'ko, S. V.; Salivon, V. F.; Ponomarev, A. G.

    2016-09-01

    We have described the structure of the proton-beam writing channel as a continuation of a nuclear scanning microprobe channel. The problem of the accuracy of positioning a probe by constructing a new high-frequency electrostatic scanning system has been solved. Special attention has been paid to designing the probe-forming system and its various configurations have been considered. The probe-forming system that best corresponds to the conditions of the lithographic process has been found based on solving the problem of optimizing proton beam formation. A system for controlling beam scanning using multifunctional module of integrated programmable logic systems has been developed.

  8. Valley-dependent beam manipulators based on photonic graphene

    Science.gov (United States)

    Deng, Fu-Sheng; Sun, Yong; Dong, Li-Juan; Liu, Yan-Hong; Shi, Yun-Long

    2017-02-01

    Trigonal warping distortion in energy band lifts the degeneracy of two valleys (K and K' points) of graphene. In this situation, electron transport becomes valley dependent, which can be used to design the valley beam splitter, collimator, or guiding device. Here, valley-dependent beam manipulators are designed based on artificial photonic graphene. In this scheme, the finite-size artificial photonic graphene is intentionally designed to realize the novel device functionalities. This kind of valley-dependent beam manipulators can work at an arbitrary range of electromagnetic waves from microwave to visible light. It potentially paves the way for the application of photonic graphene in future integrated photonic devices.

  9. A parallelogram-based compliant remote-center-of-motion stage for active parallel alignment

    Science.gov (United States)

    Qu, Jianliang; Chen, Weihai; Zhang, Jianbin

    2014-09-01

    Parallel alignment stage with remote-center-of-motion (RCM) is of key importance in precision out-of-plane aligning since it can eliminate the harmful lateral displacement generated at the output platform. This paper presents the development of a parallelogram-based compliant RCM stage for active parallel alignment. Different from conventional parallelogram-based RCM mechanism, the proposed stage is designed with compliant mechanisms, which endows the stage with many attractive merits when used in precision micro-/nanomanipulations. A symmetric double-parallelogram mechanism (SDPM) based on flexure hinges is developed as the rotary guiding component to realize desired RCM function. Due to the geometrical constraint of the SDPM, the operating space of the stage can be easily adjusted by bending the input links without loss of rotational precision. The stage is driven by a piezoelectric actuator and its output motion is measured by non-contact displacement sensors. Based on pseudo-rigid-body simplification method, the analytical models predicting kinematics, statics, and dynamics of the RCM stage have been established. Besides, the dimensional optimization is conducted in order to maximize the first resonance frequency of the stage. After that, finite element analysis is conducted to validate the established models and the prototype of the stage is fabricated for performance tests. The experimental results show that the developed RCM stage has a rotational range of 1.45 mrad while the maximum center shift of the RCM point is as low as 1 μm, which validate the effectiveness of the proposed scheme.

  10. Performance based analysis of hidden beams in reinforced concrete structures

    Directory of Open Access Journals (Sweden)

    Helou Samir H.

    2014-01-01

    Full Text Available Local and perhaps regional vernacular reinforced concrete building construction leans heavily against designing slabs with imbedded hidden beams for flooring systems in most structures including major edifices. The practice is distinctive in both framed and in shear wall structures. Hidden beams are favoured structural elements due to their many inherent features that characterize them; they save on floor height clearance; they also save on formwork, labour and material cost. Moreover, hidden beams form an acceptable aesthetic appearance that does not hinder efficient interior space partitioning. Such beams have the added advantage of clearing the way for horizontal electromechanical ductwork. However, seismic considerations, in all likelihood, are seldom seriously addressed. The mentioned structural system of shallow beams is adopted in ribbed slabs, waffle slabs and at times with solid slabs. Ribbed slabs and waffle slabs are more prone to hidden beam inclusion due to the added effective height of the concrete section. Due to the presence of a relatively high reinforcement ratio at the joints the sections at such location tend to become less ductile with unreliable contribution to spandrel force resistance. In the following study the structural influence of hidden beams within slabs is investigated. With the primary focus on a performance based analysis of such elements within a structure. This is investigated with due attention to shear wall contribution to the overall behaviour of such structures. Numerical results point in the direction that the function of hidden beams is not as adequate as desired. Therefore it is strongly believed that they are generally superfluous and maybe eliminated altogether. Conversely, shallow beams seem to render the overall seismic capacity of the structure unreliable. Since such an argument is rarely manifested within the linear analysis domain; a pushover analysis exercise is thus mandatory for behaviour

  11. A Method for SINS Alignment with Large Initial Misalignment Angles Based on Kalman Filter with Parameters Resetting

    Directory of Open Access Journals (Sweden)

    Xixiang Liu

    2014-01-01

    Full Text Available In the initial alignment process of strapdown inertial navigation system (SINS, large initial misalignment angles always bring nonlinear problem, which causes alignment failure when the classical linear error model and standard Kalman filter are used. In this paper, the problem of large misalignment angles in SINS initial alignment is investigated, and the key reason for alignment failure is given as the state covariance from Kalman filter cannot represent the true one during the steady filtering process. According to the analysis, an alignment method for SINS based on multiresetting the state covariance matrix of Kalman filter is designed to deal with large initial misalignment angles, in which classical linear error model and standard Kalman filter are used, but the state covariance matrix should be multireset before the steady process until large misalignment angles are decreased to small ones. The performance of the proposed method is evaluated by simulation and car test, and the results indicate that the proposed method can fulfill initial alignment with large misalignment angles effectively and the alignment accuracy of the proposed method is as precise as that of alignment with small misalignment angles.

  12. A Nonlinear Finite Element Framework for Viscoelastic Beams Based on the High-Order Reddy Beam Theory

    Science.gov (United States)

    2012-06-09

    these formulations employ some form of either the Euler-Bernoulli or Timoshenko beam theories and are mostly restricted to small strain analysis. The...and Kadioglu [1], wherein a Timoshenko beam element is de- veloped using mixed variational principles. In their work, the finite element model...method in their analysis of cylindrical helical rods (based on the Timoshenko beam hypotheses). Additional numerical formulations for viscoelastic beams

  13. SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.

    Directory of Open Access Journals (Sweden)

    Brejnev Muhizi Muhire

    Full Text Available The perpetually increasing rate at which viral full-genome sequences are being determined is creating a pressing demand for computational tools that will aid the objective classification of these genome sequences. Taxonomic classification approaches that are based on pairwise genetic identity measures are potentially highly automatable and are progressively gaining favour with the International Committee on Taxonomy of Viruses (ICTV. There are, however, various issues with the calculation of such measures that could potentially undermine the accuracy and consistency with which they can be applied to virus classification. Firstly, pairwise sequence identities computed based on multiple sequence alignments rather than on multiple independent pairwise alignments can lead to the deflation of identity scores with increasing dataset sizes. Also, when gap-characters need to be introduced during sequence alignments to account for insertions and deletions, methodological variations in the way that these characters are introduced and handled during pairwise genetic identity calculations can cause high degrees of inconsistency in the way that different methods classify the same sets of sequences. Here we present Sequence Demarcation Tool (SDT, a free user-friendly computer program that aims to provide a robust and highly reproducible means of objectively using pairwise genetic identity calculations to classify any set of nucleotide or amino acid sequences. SDT can produce publication quality pairwise identity plots and colour-coded distance matrices to further aid the classification of sequences according to ICTV approved taxonomic demarcation criteria. Besides a graphical interface version of the program for Windows computers, command-line versions of the program are available for a variety of different operating systems (including a parallel version for cluster computing platforms.

  14. Sensitivity studies of beam directionality, beam size, and neutron spectrum for a fission converter-based epithermal neutron beam for boron neutron capture therapy.

    Science.gov (United States)

    Sakamoto, S; Kiger, W S; Harling, O K

    1999-09-01

    Sensitivity studies of epithermal neutron beam performance in boron neutron capture therapy are presented for realistic neutron beams with varying filter/moderator and collimator/delimiter designs to examine the relative importance of neutron beam spectrum, directionality, and size. Figures of merit for in-air and in-phantom beam performance are calculated via the Monte Carlo technique for different well-optimized designs of a fission converter-based epithermal neutron beam with head phantoms as the irradiation target. It is shown that increasing J/phi, a measure of beam directionality, does not always lead to corresponding monotonic improvements in beam performance. Due to the relatively low significance, for most configurations, of its effect on in-phantom performance and the large intensity losses required to produce beams with very high J/phi, beam directionality should not be considered an important figure of merit in epithermal neutron beam design except in terms of its consequences on patient positioning and collateral dose. Hardening the epithermal beam spectrum, while maintaining the specific fast neutron dose well below the inherent hydrogen capture dose, improves beam penetration and advantage depth and, as a desirable by-product, significantly increases beam intensity. Beam figures of merit are shown to be strongly dependent on beam size relative to target size. Beam designs with J/phi approximately 0.65-0.7, specific fast neutron doses of 2-2.6x10(-13) Gy cm2/n and beam sizes equal to or larger than the size of the head target produced the deepest useful penetration, highest therapeutic ratios, and highest intensities.

  15. Reliability of lower limb alignment measures using an established landmark-based method with a customized computer software program.

    Science.gov (United States)

    Sled, Elizabeth A; Sheehy, Lisa M; Felson, David T; Costigan, Patrick A; Lam, Miu; Cooke, T Derek V

    2011-01-01

    The objective of the study was to evaluate the reliability of frontal plane lower limb alignment measures using a landmark-based method by (1) comparing inter- and intra-reader reliability between measurements of alignment obtained manually with those using a computer program, and (2) determining inter- and intra-reader reliability of computer-assisted alignment measures from full-limb radiographs. An established method for measuring alignment was used, involving selection of 10 femoral and tibial bone landmarks. (1) To compare manual and computer methods, we used digital images and matching paper copies of five alignment patterns simulating healthy and malaligned limbs drawn using AutoCAD. Seven readers were trained in each system. Paper copies were measured manually and repeat measurements were performed daily for 3 days, followed by a similar routine with the digital images using the computer. (2) To examine the reliability of computer-assisted measures from full-limb radiographs, 100 images (200 limbs) were selected as a random sample from 1,500 full-limb digital radiographs which were part of the Multicenter Osteoarthritis Study. Three trained readers used the software program to measure alignment twice from the batch of 100 images, with two or more weeks between batch handling. Manual and computer measures of alignment showed excellent agreement (intraclass correlations [ICCs] 0.977-0.999 for computer analysis; 0.820-0.995 for manual measures). The computer program applied to full-limb radiographs produced alignment measurements with high inter- and intra-reader reliability (ICCs 0.839-0.998). In conclusion, alignment measures using a bone landmark-based approach and a computer program were highly reliable between multiple readers.

  16. Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

    DEFF Research Database (Denmark)

    Lu, David V; Brown, Randall H; Arumugam, Manimozhiyan;

    2009-01-01

    MOTIVATION: The most accurate way to determine the intron-exon structures in a genome is to align spliced cDNA sequences to the genome. Thus, cDNA-to-genome alignment programs are a key component of most annotation pipelines. The scoring system used to choose the best alignment is a primary...

  17. MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information.

    Science.gov (United States)

    Balech, Bachir; Vicario, Saverio; Donvito, Giacinto; Monaco, Alfonso; Notarangelo, Pasquale; Pesole, Graziano

    2015-08-01

    Here we present the MSA-PAD application, a DNA multiple sequence alignment framework that uses PFAM protein domain information to align DNA sequences encoding either single or multiple protein domains. MSA-PAD has two alignment options: gene and genome mode.

  18. Image-based overlay (IBO) target segment design on self-aligned patterning process

    Science.gov (United States)

    Ye, Lei; Hu, Huayong; He, Weiming

    2016-03-01

    Self-Aligned Double Patterning (SADP) is widely applied in advanced sub-4X patterning technology, especially for the 1D resolution shrinkage of memory technology. As the application of SADP makes lithography minimum pitch down to half of design pitch with the remaining spacer aside core, its alignment mark and overlay (OVL) mark have to be well-segmented to ensure enough mark contrast. In this paper, we designed two types of image-based overlay (IBO) bar in bar (BIB) OVL target: bar-segmentation and background-segmentation with different duty ratio. Based on these two designed types of marks, we focus on the OVL of 2nd photo layer to 1st SADP layer with the core removed (which means spacer grating structure remained). We studied the effect of the overlay target segmentation on the precision and robustness of wafer-level overlay performance. Different lithography processes were also studied, including single layer lithography and tri-layer lithography with planarized spacer grating structures. We found there are strong correlations between overlay measurement accuracy and background segmentation rules. The results of our study will be presented and discussed in this paper.

  19. A Dirichlet Process Mixture Based Name Origin Clustering and Alignment Model for Transliteration

    Directory of Open Access Journals (Sweden)

    Chunyue Zhang

    2015-01-01

    Full Text Available In machine transliteration, it is common that the transliterated names in the target language come from multiple language origins. A conventional maximum likelihood based single model can not deal with this issue very well and often suffers from overfitting. In this paper, we exploit a coupled Dirichlet process mixture model (cDPMM to address overfitting and names multiorigin cluster issues simultaneously in the transliteration sequence alignment step over the name pairs. After the alignment step, the cDPMM clusters name pairs into many groups according to their origin information automatically. In the decoding step, in order to use the learned origin information sufficiently, we use a cluster combination method (CCM to build clustering-specific transliteration models by combining small clusters into large ones based on the perplexities of name language and transliteration model, which makes sure each origin cluster has enough data for training a transliteration model. On the three different Western-Chinese multiorigin names corpora, the cDPMM outperforms two state-of-the-art baseline models in terms of both the top-1 accuracy and mean F-score, and furthermore the CCM significantly improves the cDPMM.

  20. Application of diamond based beam loss monitors at LHC

    Energy Technology Data Exchange (ETDEWEB)

    Hempel, Maria

    2013-04-15

    the LHC, especially near each quadrupole and next to collimators. Ionization chambers have a time resolution of 40 s that is a half LHC turn and in case of a large beam loss, they request a beam dump. Another type of beam loss monitors are diamond sensors because of a time resolution of about one nanosecond and high radiation hardness. One diamond detector system is located in the cleaning region of the LHC and is able to detect various types of beam losses. Another diamond detector system (BCM1F) is installed inside the CMS detector to protect the CMS from adverse beam conditions. BCM1F monitors also the luminosity during collisions and delivers important beam parameters. Additional condition monitors, based on the BCM1F system, are located next to CMS, near to LHCb and ALICE to measure large beam losses in the LHC ring. The process of a beam loss due to dust particles is explained, and additional simulations were done to understand these process in more detail. The result of the simulation are also given. Beam loss data recorded by the diamond sensors in the cleaning region and the BCM1F diamonds are presented.

  1. Automatic Computer Algorithms for Beam-based Setup of the LHC Collimators

    CERN Document Server

    Valentino, G; Assmann, R W; Bruce, R; Redaelli, S; Salvachua, B; Wollmann, D

    2012-01-01

    Beam-based setup of the LHC collimators is necessary to establish the beam centers and beam sizes at the collimator locations and determine the operational settings during various stages of the LHC machine cycle.

  2. SPEAR3 Construction Alignment

    Energy Technology Data Exchange (ETDEWEB)

    LeCocq, Catherine; Banuelos, Cristobal; Fuss, Brian; Gaudreault, Francis; Gaydosh, Michael; Griffin, Levirt; Imfeld, Hans; McDougal, John; Perry, Michael; Rogers,; /SLAC

    2005-08-17

    An ambitious seven month shutdown of the existing SPEAR2 synchrotron radiation facility was successfully completed in March 2004 when the first synchrotron light was observed in the new SPEAR3 ring, SPEAR3 completely replaced SPEAR2 with new components aligned on a new highly-flat concrete floor. Devices such as magnets and vacuum chambers had to be fiducialized and later aligned on girder rafts that were then placed into the ring over pre-aligned support plates. Key to the success of aligning this new ring was to ensure that the new beam orbit matched the old SPEAR2 orbit so that existing experimental beamlines would not have to be reoriented. In this presentation a pictorial summary of the Alignment Engineering Group's surveying tasks for the construction of the SPEAR3 ring is provided. Details on the networking and analysis of various surveys throughout the project can be found in the accompanying paper.

  3. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    The main developments in muon alignment since March 2010 have been the production, approval and deployment of alignment constants for the ICHEP data reprocessing. In the barrel, a new geometry, combining information from both hardware and track-based alignment systems, has been developed for the first time. The hardware alignment provides an initial DT geometry, which is then anchored as a rigid solid, using the link alignment system, to a reference frame common to the tracker. The “GlobalPositionRecords” for both the Tracker and Muon systems are being used for the first time, and the initial tracker-muon relative positioning, based on the link alignment, yields good results within the photogrammetry uncertainties of the Tracker and alignment ring positions. For the first time, the optical and track-based alignments show good agreement between them; the optical alignment being refined by the track-based alignment. The resulting geometry is the most complete to date, aligning all 250 DTs, ...

  4. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment.

    Science.gov (United States)

    Huo, Hongwei; Xie, Qiaoluan; Shen, Xubang; Stojkovic, Vojislav

    2008-01-01

    This paper presents an original Quantum Genetic algorithm for Multiple sequence ALIGNment (QGMALIGN) that combines a genetic algorithm and a quantum algorithm. A quantum probabilistic coding is designed for representing the multiple sequence alignment. A quantum rotation gate as a mutation operator is used to guide the quantum state evolution. Six genetic operators are designed on the coding basis to improve the solution during the evolutionary process. The features of implicit parallelism and state superposition in quantum mechanics and the global search capability of the genetic algorithm are exploited to get efficient computation. A set of well known test cases from BAliBASE2.0 is used as reference to evaluate the efficiency of the QGMALIGN optimization. The QGMALIGN results have been compared with the most popular methods (CLUSTALX, SAGA, DIALIGN, SB_PIMA, and QGMALIGN) results. The QGMALIGN results show that QGMALIGN performs well on the presenting biological data. The addition of genetic operators to the quantum algorithm lowers the cost of overall running time.

  5. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model.

    Science.gov (United States)

    Studholme, C; Constable, R T; Duncan, J S

    2000-11-01

    Mapping of functional magnetic resonance imaging (fMRI) to conventional anatomical MRI is a valuable step in the interpretation of fMRI activations. One of the main limits on the accuracy of this alignment arises from differences in the geometric distortion induced by magnetic field inhomogeneity. This paper describes an approach to the registration of echo planar image (EPI) data to conventional anatomical images which takes into account this difference in geometric distortion. We make use of an additional spin echo EPI image and use the known signal conservation in spin echo distortion to derive a specialized multimodality nonrigid registration algorithm. We also examine a plausible modification using log-intensity evaluation of the criterion to provide increased sensitivity in areas of low EPI signal. A phantom-based imaging experiment is used to evaluate the behavior of the different criteria, comparing nonrigid displacement estimates to those provided by a imagnetic field mapping acquisition. The algorithm is then applied to a range of nine brain imaging studies illustrating global and local improvement in the anatomical alignment and localization of fMRI activations.

  6. Aligned carbon nanotube based ultrasonic microtransducers for durability monitoring in civil engineering

    Energy Technology Data Exchange (ETDEWEB)

    Lebental, B [Universite Paris-Est, IFSTTAR, 58 boulevard Lefebvre, 75732 Paris Cedex 15 (France); Chainais, P [INRIA Lille-Nord Europe (SEQUEL), 40 avenue Halley, 59650 Villeneuve d' Ascq (France); Chenevier, P [SPEC, IRAMIS, CEA/Saclay, Gif-sur-Yvette (France); Chevalier, N; Delevoye, E; Fabbri, J-M; Nicoletti, S; Renaux, P; Ghis, A, E-mail: berengere.lebental@ifsttar.fr [CEA, LETI, MINATEC Campus, F-38054 Grenoble (France)

    2011-09-30

    Structural health monitoring of porous materials such as concrete is becoming a major component in our resource-limited economy, as it conditions durable exploitation of existing facilities. Durability in porous materials depends on nanoscale features which need to be monitored in situ with nanometric resolution. To address this problem, we put forward an approach based on the development of a new nanosensor, namely a capacitive micrometric ultrasonic transducer whose vibrating membrane is made of aligned single-walled carbon nanotubes (SWNT). Such sensors are meant to be embedded in large numbers within a porous material in order to provide information on its durability by monitoring in situ neighboring individual micropores. In the present paper, we report on the feasibility of the key building block of the proposed sensor: we have fabricated well-aligned, ultra-thin, dense SWNT membranes that show above-nanometer amplitudes of vibration over a large range of frequencies spanning from 100 kHz to 5 MHz.

  7. Aligned carbon nanotube based ultrasonic microtransducers for durability monitoring in civil engineering.

    Science.gov (United States)

    Lebental, B; Chainais, P; Chenevier, P; Chevalier, N; Delevoye, E; Fabbri, J-M; Nicoletti, S; Renaux, P; Ghis, A

    2011-09-30

    Structural health monitoring of porous materials such as concrete is becoming a major component in our resource-limited economy, as it conditions durable exploitation of existing facilities. Durability in porous materials depends on nanoscale features which need to be monitored in situ with nanometric resolution. To address this problem, we put forward an approach based on the development of a new nanosensor, namely a capacitive micrometric ultrasonic transducer whose vibrating membrane is made of aligned single-walled carbon nanotubes (SWNT). Such sensors are meant to be embedded in large numbers within a porous material in order to provide information on its durability by monitoring in situ neighboring individual micropores. In the present paper, we report on the feasibility of the key building block of the proposed sensor: we have fabricated well-aligned, ultra-thin, dense SWNT membranes that show above-nanometer amplitudes of vibration over a large range of frequencies spanning from 100 kHz to 5 MHz.

  8. Accelerator Based Neutron Beams for Neutron Capture Therapy

    Energy Technology Data Exchange (ETDEWEB)

    Yanch, Jacquelyn C.

    2003-04-11

    The DOE-funded accelerator BNCT program at the Massachusetts Institute of Technology has resulted in the only operating accelerator-based epithermal neutron beam facility capable of generating significant dose rates in the world. With five separate beamlines and two different epithermal neutron beam assemblies installed, we are currently capable of treating patients with rheumatoid arthritis in less than 15 minutes (knee joints) or 4 minutes (finger joints) or irradiating patients with shallow brain tumors to a healthy tissue dose of 12.6 Gy in 3.6 hours. The accelerator, designed by Newton scientific Incorporated, is located in dedicated laboratory space that MIT renovated specifically for this project. The Laboratory for Accelerator Beam Applications consists of an accelerator room, a control room, a shielded radiation vault, and additional laboratory space nearby. In addition to the design, construction and characterization of the tandem electrostatic accelerator, this program also resulted in other significant accomplishments. Assemblies for generating epithermal neutron beams were designed, constructed and experimentally evaluated using mixed-field dosimetry techniques. Strategies for target construction and target cooling were implemented and tested. We demonstrated that the method of submerged jet impingement using water as the coolant is capable of handling power densities of up to 6 x 10(sup 7) W/m(sup 2) with heat transfer coefficients of 10(sup 6)W/m(sup 2)-K. Experiments with the liquid metal gallium demonstrated its superiority compared with water with little effect on the neutronic properties of the epithermal beam. Monoenergetic proton beams generated using the accelerator were used to evaluate proton RBE as a function of LET and demonstrated a maximum RBE at approximately 30-40 keV/um, a finding consistent with results published by other researchers. We also developed an experimental approach to biological intercomparison of epithermal beams and

  9. Radiological Outcomes and Operative Time following Total Knee Arthroplasty using Accelerometer-based, Portable Navigation versus Conventional Inter-Medullary Alignment Guides

    Science.gov (United States)

    MacDessi, Samuel; Solayar, GN; Thatcher, N; Chen, Darren B

    2016-01-01

    Objectives: Accelerometer-based, portable navigation instrumentation is a new method of achieving desired resection alignments in total knee arthroplasty (TKA). Methods: After randomisation and the application of exclusion criteria, 79 knees were analysed. 42 patients which underwent TKA using conventional intra-medullary (IM) alignment guides were compared to 37 patients with the use of accelerometer-based, portable navigation device (KneeAlign; OrthoAlign Inc, Aliso Viejo, California). Radiographic results were obtained from post-operative computer-tomography following the CT Perth Protocol. Results: In the IM cohort, 81.0% of patients had a coronal alignment within 3° of a neutral mechanical axis (vs 83.8% with KneeAlign, p=0.74), 81.0% had a femoral coronal alignment within 2° of perpendicular to the femoral mechanical axis (vs 89.2% with KneeAlign, p=0.31), and 92.9% had a tibial coronal alignment within 2° of perpendicular to the tibial mechanical axis (vs 81.1% with KneeAlign, p=0.12). Regarding sagittal alignment, the IM cohort had 90.5% of patients with femoral component alignment within 2° of optimum (vs 91.9% with KneeAlign, p=0.83) and 92.9% had a tibial component alignment within 2° of the optimal tibial slope (vs 89.2% with KneeAlign, p=0.57). The mean tourniquet time (from incision to completion of coronal bone resections) in the IM cohort was 16.5± 8.9 minutes vs 22.2 ± 7.6 minutes in the KneeAlign cohort (p<0.003). Conclusion: Accelerometer-based, portable navigation has a statistically similar outcome in alignment following TKA as IM guides. It is noted that using the portable navigation device does prolong surgical time compared to conventional IM surgery and this may be due to the learning curve.

  10. Can a semi-automated surface matching and principal axis-based algorithm accurately quantify femoral shaft fracture alignment in six degrees of freedom?

    Science.gov (United States)

    Crookshank, Meghan C; Beek, Maarten; Singh, Devin; Schemitsch, Emil H; Whyne, Cari M

    2013-07-01

    Accurate alignment of femoral shaft fractures treated with intramedullary nailing remains a challenge for orthopaedic surgeons. The aim of this study is to develop and validate a cone-beam CT-based, semi-automated algorithm to quantify the malalignment in six degrees of freedom (6DOF) using a surface matching and principal axes-based approach. Complex comminuted diaphyseal fractures were created in nine cadaveric femora and cone-beam CT images were acquired (27 cases total). Scans were cropped and segmented using intensity-based thresholding, producing superior, inferior and comminution volumes. Cylinders were fit to estimate the long axes of the superior and inferior fragments. The angle and distance between the two cylindrical axes were calculated to determine flexion/extension and varus/valgus angulation and medial/lateral and anterior/posterior translations, respectively. Both surfaces were unwrapped about the cylindrical axes. Three methods of matching the unwrapped surface for determination of periaxial rotation were compared based on minimizing the distance between features. The calculated corrections were compared to the input malalignment conditions. All 6DOF were calculated to within current clinical tolerances for all but two cases. This algorithm yielded accurate quantification of malalignment of femoral shaft fractures for fracture gaps up to 60 mm, based on a single CBCT image of the fractured limb.

  11. Alternate transmission relaying based on interference alignment in 3-relay half-duplex MIMO systems

    KAUST Repository

    Park, Seongho

    2012-09-01

    In a half-duplex relaying, the capacity pre-log factor 1/2 is a major drawback in spectral efficiency. This paper proposes a linear precoding/decoding scheme and an alternate relaying protocol in a dual-hop half-duplex system where three relays help the communication between the source and the destination. In our proposed scheme, we consider a phase incoherent method in relays in which the source alternately transmits message signals to the different relays. In addition, we propose a linear interference alignment scheme which can suppress the inter-relay interference resulting from the phase incoherence of relaying. Based on our analysis of degrees of freedom and our simulation results, we show that our proposed scheme achieves additional degrees of freedom compared to the conventional half-duplex relaying. © 2012 IEEE.

  12. Genetic Algorithm Phase Retrieval for the Systematic Image-Based Optical Alignment Testbed

    Science.gov (United States)

    Taylor, Jaime; Rakoczy, John; Steincamp, James

    2003-01-01

    Phase retrieval requires calculation of the real-valued phase of the pupil fimction from the image intensity distribution and characteristics of an optical system. Genetic 'algorithms were used to solve two one-dimensional phase retrieval problem. A GA successfully estimated the coefficients of a polynomial expansion of the phase when the number of coefficients was correctly specified. A GA also successfully estimated the multiple p h e s of a segmented optical system analogous to the seven-mirror Systematic Image-Based Optical Alignment (SIBOA) testbed located at NASA s Marshall Space Flight Center. The SIBOA testbed was developed to investigate phase retrieval techniques. Tiphilt and piston motions of the mirrors accomplish phase corrections. A constant phase over each mirror can be achieved by an independent tip/tilt correction: the phase Conection term can then be factored out of the Discrete Fourier Tranform (DFT), greatly reducing computations.

  13. Alignment and integration of complex networks by hypergraph-based spectral clustering

    CERN Document Server

    Michoel, Tom

    2012-01-01

    Complex networks possess a rich, multi-scale structure reflecting the dynamical and functional organization of the systems they model. Often there is a need to analyze multiple networks simultaneously, to model a system by more than one type of interaction or to go beyond simple pairwise interactions, but currently there is a lack of theoretical and computational methods to address such problems. Here we introduce a framework for multi-network analysis based on hypergraph representations. Our main result is a generalization of the Perron-Frobenius theorem from which we derive spectral clustering algorithms for directed and undirected hypergraphs. We illustrate our approach with applications for tripartite community detection in folksonomies, for local and global alignment of protein-protein interaction networks between multiple species and for detecting clusters of overlapping regulatory pathways in directed networks.

  14. Highly uniform hole spacing micro brushes based on aligned carbon nanotube arrays

    Science.gov (United States)

    Yang, Zhi; Zhu, Xingzhong; Huang, Xiaolu; Cheng, Yingwu; Liu, Yun; Geng, Huijuan; Wu, Yue; Su, Yanjie; Wei, Hao; Zhang, Yafei

    2013-11-01

    Highly uniform hole spacing micro brushes were fabricated based on aligned carbon nanotube (CNT) arrays synthesized by chemical vapor deposition method with the assistance of anodic aluminum oxide (AAO) template. Different micro brushes from CNT arrays were constructed on silicon, glass, and polyimide substrates, respectively. The micro brushes had highly uniform hole spacing originating from the regularly periodic pore structure of AAO template. The CNT arrays, serving as bristles, were firmly grafted on the substrates. The brushes can easily clean particles with scale of micrometer on the surface of silicon wafer and from the narrow spaces between the electrodes in a series of cleaning experiments. The results show the potential application of the CNT micro brushes as a cleaning tool in microelectronics manufacture field.

  15. A New Continuous Rotation IMU Alignment Algorithm Based on Stochastic Modeling for Cost Effective North-Finding Applications

    Directory of Open Access Journals (Sweden)

    Yun Li

    2016-12-01

    Full Text Available Based on stochastic modeling of Coriolis vibration gyros by the Allan variance technique, this paper discusses Angle Random Walk (ARW, Rate Random Walk (RRW and Markov process gyroscope noises which have significant impacts on the North-finding accuracy. A new continuous rotation alignment algorithm for a Coriolis vibration gyroscope Inertial Measurement Unit (IMU is proposed in this paper, in which the extended observation equations are used for the Kalman filter to enhance the estimation of gyro drift errors, thus improving the north-finding accuracy. Theoretical and numerical comparisons between the proposed algorithm and the traditional ones are presented. The experimental results show that the new continuous rotation alignment algorithm using the extended observation equations in the Kalman filter is more efficient than the traditional two-position alignment method. Using Coriolis vibration gyros with bias instability of 0.1°/h, a north-finding accuracy of 0.1° (1σ is achieved by the new continuous rotation alignment algorithm, compared with 0.6° (1σ north-finding accuracy for the two-position alignment and 1° (1σ for the fixed-position alignment.

  16. A New Continuous Rotation IMU Alignment Algorithm Based on Stochastic Modeling for Cost Effective North-Finding Applications

    Science.gov (United States)

    Li, Yun; Wu, Wenqi; Jiang, Qingan; Wang, Jinling

    2016-01-01

    Based on stochastic modeling of Coriolis vibration gyros by the Allan variance technique, this paper discusses Angle Random Walk (ARW), Rate Random Walk (RRW) and Markov process gyroscope noises which have significant impacts on the North-finding accuracy. A new continuous rotation alignment algorithm for a Coriolis vibration gyroscope Inertial Measurement Unit (IMU) is proposed in this paper, in which the extended observation equations are used for the Kalman filter to enhance the estimation of gyro drift errors, thus improving the north-finding accuracy. Theoretical and numerical comparisons between the proposed algorithm and the traditional ones are presented. The experimental results show that the new continuous rotation alignment algorithm using the extended observation equations in the Kalman filter is more efficient than the traditional two-position alignment method. Using Coriolis vibration gyros with bias instability of 0.1°/h, a north-finding accuracy of 0.1° (1σ) is achieved by the new continuous rotation alignment algorithm, compared with 0.6° (1σ) north-finding accuracy for the two-position alignment and 1° (1σ) for the fixed-position alignment. PMID:27983585

  17. Electron Beam Diagnostic Based on a Short Seeded FEL

    CERN Document Server

    Graves, W; Kaertner, Franz X; Zwart, T

    2005-01-01

    The optical properties of an FEL amplifier are sensitively dependent on the electron beam current profile, energy spread, and transverse emittance. In this paper we consider using a short FEL amplifier operating on a low harmonic of a visible-IR input seed as a mildly destructive electron beam diagnostic able to measure these properties for sub-ps time slices. The optical methods are described as well as a planned implementation of the device for the FERMI@Elettra XUV FEL under construction at Sincrotrone Trieste, including its fiber-based seed laser closely coupled with the facility timing system, undulator parameters, and requirements on the electron and FEL pulses. This diagnostic is conveniently integrated with a "laser heater" designed to increase the very low electron beam energy spread produced by a photoinjector in order to avoid space charge and coherent synchrotron radiation instabilities.

  18. Tutorial on beam-based feedback systems for linacs

    Energy Technology Data Exchange (ETDEWEB)

    Hendrickson, L.; Allison, S.; Gromme, T.; Grossberg, P.; Himel, T.; Krauter, K.; MacKenzie, R.; Ross, M.; Sass, R.; Shoaee, H.

    1994-08-01

    A generalized fast feedback system stabilizes beams in the SLC. It performs measurements and modifies actuator settings to control beam states such as position, angle, energy and intensity on a pulse to pulse basis. An adaptive cascade feature allows communication between a series of linac loops, avoiding overcorrection problems. The system is based on the state space formalism of digital control theory. Due to the database-driven design, new loops are added without requiring software modifications. Recent enhancements support the monitoring and control of nonlinear states such as beam phase using excitation techniques. In over three years of operation, the feedback system has grown from its original eight loops to more than fifty loops, and it has been invaluable in stabilizing the machine.

  19. High performance flexible pH sensor based on carboxyl-functionalized and DEP aligned SWNTs

    Science.gov (United States)

    Liu, Lu; Shao, Jinyou; Li, Xiangming; Zhao, Qiang; Nie, Bangbang; Xu, Chuan; Ding, Haitao

    2016-11-01

    The detection and control of the pH is very important in many biomedical and chemical reaction processes. A miniaturized flexible pH sensor that is light weight, robust, and conformable is very important in many applications, such as multifunctional lab-on-a-chip systems or wearable biomedical devices. In this work, we demonstrate a flexible chemiresistive pH sensor based on dielectrophoresis (DEP) aligned carboxyl-functionalized single-walled carbon nanotubes (SWNTs). Decorated carboxyl groups can react with hydrogen (H+) and hydroxide (OH-) ions, enabling the sensor to be capable of sensing the pH. DEP is used to deposit well-organized and highly aligned SWNTs in desired locations, which improves the metal-nanotube interface and highly rapid detection of the pH, resulting in better overall device performance. When pH buffer solutions are dropped onto such SWNTs, the H+ and OH- ions caninteract with the carboxyl groups and affect the generation of holes and electrons in the SWNTs, leading to resistance variations in the SWNTs. The results shows that the relative resistance variations of the sensor increases linearly with increasing the pH values in the range from 5 to 9 and the response time ranges from 0.2 s to 22.6 s. The pH sensor also shows high performance in mechanical bendability, which benefited from the combination of flexible PET substrates and SWNTs. The SWNT-based flexible pH sensor demonstrates great potential in a wide range of areas due to its simple structure, excellent performance, low power consumption, and compatibility with integrated circuits.

  20. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Z. Szillasi and G. Gomez.

    2013-01-01

    When CMS is opened up, major components of the Link and Barrel Alignment systems will be removed. This operation, besides allowing for maintenance of the detector underneath, is needed for making interventions that will reinforce the alignment measurements and make the operation of the alignment system more reliable. For that purpose and also for their general maintenance and recalibration, the alignment components will be transferred to the Alignment Lab situated in the ISR area. For the track-based alignment, attention is focused on the determination of systematic uncertainties, which have become dominant, since now there is a large statistics of muon tracks. This will allow for an improved Monte Carlo misalignment scenario and updated alignment position errors, crucial for high-momentum muon analysis such as Z′ searches.

  1. Sound beam manipulation based on temperature gradients

    Energy Technology Data Exchange (ETDEWEB)

    Qian, Feng [Key Laboratory of Modern Acoustics, Institute of Acoustics and School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093 (China); School of Physics & Electronic Engineering, Changshu Institute of Technology, Changshu 215500 (China); Quan, Li; Liu, Xiaozhou, E-mail: xzliu@nju.edu.cn; Gong, Xiufen [Key Laboratory of Modern Acoustics, Institute of Acoustics and School of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093 (China)

    2015-10-28

    Previous research with temperature gradients has shown the feasibility of controlling airborne sound propagation. Here, we present a temperature gradients based airborne sound manipulation schemes: a cylindrical acoustic omnidirectional absorber (AOA). The proposed AOA has high absorption performance which can almost completely absorb the incident wave. Geometric acoustics is used to obtain the refractive index distributions with different radii, which is then utilized to deduce the desired temperature gradients. Since resonant units are not applied in the scheme, its working bandwidth is expected to be broadband. The scheme is temperature-tuned and easy to realize, which is of potential interest to fields such as noise control or acoustic cloaking.

  2. Bilayer Beams and Relay Sharing based OFDMA Cellular Architecture

    Directory of Open Access Journals (Sweden)

    Yanxiong Pan

    2011-08-01

    Full Text Available Over the past decade, researchers have been putting a lot of energy on co-channel interference suppression in the forthcoming fourth generation (4G wireless networks. Existing approaches to interference suppression are mainly based on signal processing, cooperative communication or coordination techniques. Though good performance has been attained already, a more complex receiver is needed, and there is still room for improvement through other ways.Considering spatial frequency reuse, which provides an easier way to cope with the co-channel interference, this paper proposed a bilayer beams and relay sharing based (BBRS OFDMA cellular architecture and corresponding frequency planning scheme. The main features of the novel architecture are as follows. Firstly, the base station (BS uses two beams, one composed of six wide beams providing coverage to mobile stations (MSs that access to the BS, and the other composed of six narrow beams communicating with fixed relay stations (FRSs. Secondly, in the corresponding frequency planning scheme, soft frequency reuse is considered on all FRSs further. System-level simulation results demonstrate that better coverage performance is obtained and the mean data rate of MSs near the cell edge is improved significantly. The BBRS cellular architecture provides a practical method to interference suppression in 4G networks since a better tradeoff between performance and complexity is achieved.

  3. Ontology alignment with OLA

    OpenAIRE

    Euzenat, Jérôme; Loup, David; Touzani, Mohamed; Valtchev, Petko

    2004-01-01

    euzenat2004d; International audience; Using ontologies is the standard way to achieve interoperability of heterogeneous systems within the Semantic web. However, as the ontologies underlying two systems are not necessarily compatible, they may in turn need to be aligned. Similarity-based approaches to alignment seems to be both powerful and flexible enough to match the expressive power of languages like OWL. We present an alignment tool that follows the similarity-based paradigm, called OLA. ...

  4. Spin-alignment and g-factor measurement of the I{sup {pi}}=12{sup +} isomer in {sup 192}Pb produced in the relativistic-energy fragmentation of a {sup 238}U beam

    Energy Technology Data Exchange (ETDEWEB)

    Kmiecik, M.; Maj, A.; Ciemala, M.; Grebosz, J.; Lach, M.; Maier, K.H.; Mazurek, K.; Meczynski, W.; Myalski, S.; Styczen, J.; Zieblinski, M. [H. Niewodniczanski Inst. of Nuclear Physics PAN, Krakow (Poland); Gerl, J.; Becker, F.; Caceres, L.; Doornenbal, P.; Gorska, M.; Grawe, H.; Kojuharov, I.; Prokopowicz, W.; Saito, N.; Saito, T.R.; Wollersheim, H.J. [GSI, Darmstadt (Germany); Neyens, G.; Mallion, S.; Vermeulen, N. [Inst. voor Kern- en Stralingsfysica, K.U. Leuven (Belgium); Atanasova, L.; Detistov, P. [Univ. of Sofia ' St. Kl. Ohridski' (Bulgaria). Faculty of Physics; Balabanski, D.L. [Univ. degli Studi di Camerino (Italy); INFN sez. Perugia, Dipt. di Fisica, Camerino (Italy); Bulgarian Academy of Sciences, Inst. for Nuclear Research and Nuclear Energy, Sofia (Bulgaria); Bednarczyk, P. [H. Niewodniczanski Inst. of Nuclear Physics PAN, Krakow (Poland); GSI, Darmstadt (Germany); Benzoni, G.; Blasi, N.; Brambilla, S.; Million, B.; Wieland, O. [INFN Sez. di Milano (Italy); Bracco, A.; Camera, F.; Crespi, F.C.L.; Leoni, S.; Montanari, D. [INFN Sez. di Milano (Italy); Univ. degli Studi di Milano (Italy); Chamoli, S.K.; Hass, M.; Lakshmi, S. [Weizman Inst. of Science, Rehovot (Israel); Chmel, S. [Fraunhofer INT, Euskirchen (Germany); Daugas, J.M. [CEA, DAM, DIF, Arpajon Cedex (France); Georgiev, G. [Univ. Paris-Sud 11, CNRS/IN2P3, CSNSM, Orsay-Campus (France); Gladnishki, K. [Univ. of Sofia ' St. Kl. Ohridski' (Bulgaria). Faculty of Physics; Univ. degli Studi di Camerino (Italy); INFN sez. Perugia, Dipt. di Fisica, Camerino (Italy); Hoischen, R.; Rudolph, D. [Lund Univ., Dept. of Physics, Lund (Sweden); Ilie, G. [Univ. zu Koeln, Inst. fuer Kernphysik, Koeln (Germany); National Inst. for Physics and Nuclear Engineering, Bucharest (Romania); Ionescu-Bujor, M. [National Inst. for Physics and Nuclear Engineering, Bucharest (Romania); Jolie, J. [Univ. zu Koeln, Institut fuer Kernphysik, Koeln (Germany)] [and others

    2010-08-15

    The feasibility of measuring g -factors using the TDPAD method applied to high-energy, heavy fragmentation products is explored. The 2623keV I{sup {pi}}=12{sup +} isomer in {sup 192}Pb with {tau}=1.57{mu}s has been produced using the fragmentation of a 1A GeV {sup 238}U beam. The results presented demonstrate for the first time that such heavy nuclei produced in a fragmentation reaction with a relativistic beam are sufficiently well spin-aligned. Moreover, the rather large value of the alignment, 28(10)% of the maximum possible, is preserved during the separation process allowing the determination of magnetic moments. The measured values of the lifetime, {tau}=1.54(9) {mu}s, and the g-factor, g=-0.175(20), agree with the results of previous investigations using fusion-evaporation reactions. (orig.)

  5. Photoresponsive carbohydrate-based giant surfactants: automatic vertical alignment of nematic liquid crystal for the remote-controllable optical device.

    Science.gov (United States)

    Kim, Dae-Yoon; Lee, Sang-A; Kang, Dong-Gue; Park, Minwook; Choi, Yu-Jin; Jeong, Kwang-Un

    2015-03-25

    Photoresponsive carbohydrate-based giant surfactants (abbreviated as CELAnD-OH) were specifically designed and synthesized for the automatic vertical alignment (VA) layer of nematic (N) liquid crystal (LC), which can be applied for the fabrication of remote-controllable optical devices. Without the conventional polymer-based LC alignment process, a perfect VA layer was automatically constructed by directly adding the 0.1 wt % CELA1D-OH in the N-LC media. The programmed CELA1D-OH giant surfactants in the N-LC media gradually diffused onto the substrates of LC cell and self-assembled to the expanded monolayer structure, which can provide enough empty spaces for N-LC molecules to crawl into the empty zones for the construction of VA layer. On the other hand, the CELA3D-OH giant surfactants forming the condensed monolayer structure on the substrates exhibited a planar alignment (PA) rather than a VA. Upon tuning the wavelength of light, the N-LC alignments were reversibly switched between VA and PA in the remote-controllable LC optical devices. Based on the experimental results, it was realized that understanding the interactions between N-LC molecules and amphiphilic giant surfactants is critical to design the suitable materials for the automatic LC alignment.

  6. Consensus-Based Course Design and Implementation of Constructive Alignment Theory in a Power System Analysis Course

    Science.gov (United States)

    Vanfretti, Luigi; Farrokhabadi, Mostafa

    2015-01-01

    This article presents the implementation of the constructive alignment theory (CAT) in a power system analysis course through a consensus-based course design process. The consensus-based design process involves both the instructor and graduate-level students and it aims to develop the CAT framework in a holistic manner with the goal of including…

  7. An Analysis of Strategies for Teaching Standards-Based Lesson Plan Alignment to Preservice Teachers

    Science.gov (United States)

    Drost, Bryan R.; Levine, Anita C.

    2015-01-01

    Research consistently shows that well-aligned lesson plans lead to better student learning outcomes. The development of these plans challenges both preservice teachers and the teacher educators who instruct them. This exploratory study examined strategies for teaching lesson plan alignment utilized by 87 teacher educators in the United States.…

  8. Enhanced needle localization in ultrasound using beam steering and learning-based segmentation.

    Science.gov (United States)

    Hatt, Charles R; Ng, Gary; Parthasarathy, Vijay

    2015-04-01

    Segmentation of needles in ultrasound images remains a challenging problem. In this paper, we introduce a machine learning-based method for needle segmentation in 2D beam-steered ultrasound images. We used a statistical boosting approach to train a pixel-wise classifier for needle segmentation. The Radon transform was then used to find the needle position and orientation from the segmented image. We validated our method with data from ex vivo specimens and clinical nerve block procedures, and compared the results to those obtained using previously reported needle segmentation methods. Results show improved localization success and accuracy using the proposed method. For the ex vivo datasets, assuming that the needle orientation was known a priori, the needle was successfully localized in 86.2% of the images, with a mean targeting error of 0.48mm. The robustness of the proposed method to a lack of a priori knowledge of needle orientation was also demonstrated. For the clinical datasets, assuming that the needle orientation was closely aligned with the beam steering angle selected by the physician, the needle was successfully localized in 99.8% of the images, with a mean targeting error 0.19mm. These results indicate that the learning-based segmentation method may allow for increased targeting accuracy and enhanced visualization during ultrasound-guided needle procedures.

  9. Beam collimator

    CERN Multimedia

    1977-01-01

    A four-block collimator installed on a control table for positioning the alignment reference marks. Designed for use with SPS secondary beams, the collimator operates under vacuum conditions. See Annual Report 1976 p. 121 and photo 7701014.

  10. A quantum-inspired genetic algorithm based on probabilistic coding for multiple sequence alignment.

    Science.gov (United States)

    Huo, Hong-Wei; Stojkovic, Vojislav; Xie, Qiao-Luan

    2010-02-01

    Quantum parallelism arises from the ability of a quantum memory register to exist in a superposition of base states. Since the number of possible base states is 2(n), where n is the number of qubits in the quantum memory register, one operation on a quantum computer performs what an exponential number of operations on a classical computer performs. The power of quantum algorithms comes from taking advantages of quantum parallelism. Quantum algorithms are exponentially faster than classical algorithms. Genetic optimization algorithms are stochastic search algorithms which are used to search large, nonlinear spaces where expert knowledge is lacking or difficult to encode. QGMALIGN--a probabilistic coding based quantum-inspired genetic algorithm for multiple sequence alignment is presented. A quantum rotation gate as a mutation operator is used to guide the quantum state evolution. Six genetic operators are designed on the coding basis to improve the solution during the evolutionary process. The experimental results show that QGMALIGN can compete with the popular methods, such as CLUSTALX and SAGA, and performs well on the presenting biological data. Moreover, the addition of genetic operators to the quantum-inspired algorithm lowers the cost of overall running time.

  11. Real time radiation dosimeters based on vertically aligned multiwall carbon nanotubes and graphene

    Science.gov (United States)

    Funaro, Maria; Sarno, Maria; Ciambelli, Paolo; Altavilla, Claudia; Proto, Antonio

    2013-02-01

    Measurements of the absorbed dose and quality assurance programs play an important role in radiotherapy. Ionization chambers (CIs) are considered the most important dosimeters for their high accuracy, practicality and reliability, allowing absolute dose measurements. However, they have a relative large physical size, which limits their spatial resolution, and require a high bias voltage to achieve an acceptable collection of charges, excluding their use for in vivo dosimetry. In this paper, we propose new real time radiation detectors with electrodes based on graphene or vertically aligned multiwall carbon nanotubes (MWCNTs). We have investigated their charge collection efficiency and compared their performance with electrodes made of a conventional material. Moreover, in order to highlight the effect of nanocarbons, reference radiation detectors were also tested. The proposed dosimeters display an excellent linear response to dose and collect more charge than reference ones at a standard bias voltage, permitting the construction of miniaturized CIs. Moreover, an MWCNT based CI gives the best charge collection efficiency and it enables working also to lower bias voltages and zero volts, allowing in vivo applications. Graphene based CIs show better performance with respect to reference dosimeters at a standard bias voltage. However, at decreasing bias voltage the charge collection efficiency becomes worse if compared to a reference detector, likely due to graphene’s semiconducting behavior.

  12. Centroid stabilization in alignment of FOA corner cube: designing of a matched filter

    Science.gov (United States)

    Awwal, Abdul; Wilhelmsen, Karl; Roberts, Randy; Leach, Richard; Miller Kamm, Victoria; Ngo, Tony; Lowe-Webb, Roger

    2015-02-01

    The current automation of image-based alignment of NIF high energy laser beams is providing the capability of executing multiple target shots per day. An important aspect of performing multiple shots in a day is to reduce additional time spent aligning specific beams due to perturbations in those beam images. One such alignment is beam centration through the second and third harmonic generating crystals in the final optics assembly (FOA), which employs two retro-reflecting corner cubes to represent the beam center. The FOA houses the frequency conversion crystals for third harmonic generation as the beams enters the target chamber. Beam-to-beam variations and systematic beam changes over time in the FOA corner-cube images can lead to a reduction in accuracy as well as increased convergence durations for the template based centroid detector. This work presents a systematic approach of maintaining FOA corner cube centroid templates so that stable position estimation is applied thereby leading to fast convergence of alignment control loops. In the matched filtering approach, a template is designed based on most recent images taken in the last 60 days. The results show that new filter reduces the divergence of the position estimation of FOA images.

  13. High performance flexible pH sensor based on carboxyl-functionalized and DEP aligned SWNTs

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Lu; Shao, Jinyou, E-mail: jyshao@mail.xjtu.edu.cn; Li, Xiangming; Zhao, Qiang; Nie, Bangbang; Xu, Chuan; Ding, Haitao

    2016-11-15

    Highlights: • The flexible chemiresistive pH sensor based on two-terminal microsensors eliminating the need for a reference electrode, is simple in structure and can be fabricated on a variety of substrates such as PET, PI and PVC. • SWNTs as an ideal one dimensional material are carboxyl-functionalized to make the pH sensor show high sensitivity and outstanding flexibility for practical applications. • DEP technique is used to manipulate and position SWNTs into appropriate locations and desired formations to improve the metal-nanotube interface and highly rapid detection of pH value, resulting in better overall device performance. • Mechanical bendability of the pH sensor, which arises from the combination of flexible PET substrates and SWNTs, offer a significant improvement for applications that are difficult or impossible to achieve with traditional sensors on rigid substrates. - Abstract: The detection and control of the pH is very important in many biomedical and chemical reaction processes. A miniaturized flexible pH sensor that is light weight, robust, and conformable is very important in many applications, such as multifunctional lab-on-a-chip systems or wearable biomedical devices. In this work, we demonstrate a flexible chemiresistive pH sensor based on dielectrophoresis (DEP) aligned carboxyl-functionalized single-walled carbon nanotubes (SWNTs). Decorated carboxyl groups can react with hydrogen (H{sup +}) and hydroxide (OH{sup −}) ions, enabling the sensor to be capable of sensing the pH. DEP is used to deposit well-organized and highly aligned SWNTs in desired locations, which improves the metal-nanotube interface and highly rapid detection of the pH, resulting in better overall device performance. When pH buffer solutions are dropped onto such SWNTs, the H{sup +} and OH{sup −} ions caninteract with the carboxyl groups and affect the generation of holes and electrons in the SWNTs, leading to resistance variations in the SWNTs. The results

  14. Damage identification in beams by a response surface based technique

    Directory of Open Access Journals (Sweden)

    Teidj S.

    2014-01-01

    Full Text Available In this work, identification of damage in uniform homogeneous metallic beams was considered through the propagation of non dispersive elastic torsional waves. The proposed damage detection procedure consisted of the following sequence. Giving a localized torque excitation, having the form of a short half-sine pulse, the first step was calculating the transient solution of the resulting torsional wave. This torque could be generated in practice by means of asymmetric laser irradiation of the beam surface. Then, a localized defect assumed to be characterized by an abrupt reduction of beam section area with a given height and extent was placed at a known location of the beam. Next, the response in terms of transverse section rotation rate was obtained for a point situated afterwards the defect, where the sensor was positioned. This last could utilize in practice the concept of laser vibrometry. A parametric study has been conducted after that by using a full factorial design of experiments table and numerical simulations based on a finite difference characteristic scheme. This has enabled the derivation of a response surface model that was shown to represent adequately the response of the system in terms of the following factors: defect extent and severity. The final step was performing the inverse problem solution in order to identify the defect characteristics by using measurement.

  15. An Improved Measurement Method for the Strength of Radiation of Reflective Beam in an Industrial Optical Sensor Based on Laser Displacement Meter

    Directory of Open Access Journals (Sweden)

    Youngchul Bae

    2016-05-01

    Full Text Available An optical sensor such as a laser range finder (LRF or laser displacement meter (LDM uses reflected and returned laser beam from a target. The optical sensor has been mainly used to measure the distance between a launch position and the target. However, optical sensor based LRF and LDM have numerous and various errors such as statistical errors, drift errors, cyclic errors, alignment errors and slope errors. Among these errors, an alignment error that contains measurement error for the strength of radiation of returned laser beam from the target is the most serious error in industrial optical sensors. It is caused by the dependence of the measurement offset upon the strength of radiation of returned beam incident upon the focusing lens from the target. In this paper, in order to solve these problems, we propose a novel method for the measurement of the output of direct current (DC voltage that is proportional to the strength of radiation of returned laser beam in the received avalanche photo diode (APD circuit. We implemented a measuring circuit that is able to provide an exact measurement of reflected laser beam. By using the proposed method, we can measure the intensity or strength of radiation of laser beam in real time and with a high degree of precision.

  16. An Improved Measurement Method for the Strength of Radiation of Reflective Beam in an Industrial Optical Sensor Based on Laser Displacement Meter

    Science.gov (United States)

    Bae, Youngchul

    2016-01-01

    An optical sensor such as a laser range finder (LRF) or laser displacement meter (LDM) uses reflected and returned laser beam from a target. The optical sensor has been mainly used to measure the distance between a launch position and the target. However, optical sensor based LRF and LDM have numerous and various errors such as statistical errors, drift errors, cyclic errors, alignment errors and slope errors. Among these errors, an alignment error that contains measurement error for the strength of radiation of returned laser beam from the target is the most serious error in industrial optical sensors. It is caused by the dependence of the measurement offset upon the strength of radiation of returned beam incident upon the focusing lens from the target. In this paper, in order to solve these problems, we propose a novel method for the measurement of the output of direct current (DC) voltage that is proportional to the strength of radiation of returned laser beam in the received avalanche photo diode (APD) circuit. We implemented a measuring circuit that is able to provide an exact measurement of reflected laser beam. By using the proposed method, we can measure the intensity or strength of radiation of laser beam in real time and with a high degree of precision. PMID:27223291

  17. An Improved Measurement Method for the Strength of Radiation of Reflective Beam in an Industrial Optical Sensor Based on Laser Displacement Meter.

    Science.gov (United States)

    Bae, Youngchul

    2016-05-23

    An optical sensor such as a laser range finder (LRF) or laser displacement meter (LDM) uses reflected and returned laser beam from a target. The optical sensor has been mainly used to measure the distance between a launch position and the target. However, optical sensor based LRF and LDM have numerous and various errors such as statistical errors, drift errors, cyclic errors, alignment errors and slope errors. Among these errors, an alignment error that contains measurement error for the strength of radiation of returned laser beam from the target is the most serious error in industrial optical sensors. It is caused by the dependence of the measurement offset upon the strength of radiation of returned beam incident upon the focusing lens from the target. In this paper, in order to solve these problems, we propose a novel method for the measurement of the output of direct current (DC) voltage that is proportional to the strength of radiation of returned laser beam in the received avalanche photo diode (APD) circuit. We implemented a measuring circuit that is able to provide an exact measurement of reflected laser beam. By using the proposed method, we can measure the intensity or strength of radiation of laser beam in real time and with a high degree of precision.

  18. Performance of the plugged-in 22Na based slow positron beam facility

    Institute of Scientific and Technical Information of China (English)

    WANG Ping; MA Yan-Yun; QIN Xiu-Bo; ZHANG Zhe; CAO Xing-Zhong; YU Run-Sheng; WANG Bao-Yi

    2008-01-01

    The Beijing intense slow positron beam facility is based on the 1.3 GeV linac of Beijing ElectronPositron CoUider (BEPC) aiming to produce mono-energetic intense slow positron beam for material science investigation. The plugged-in 22Na based slow positron beam section has been newly constructed to supply continuous beam time for the debugging of positron annihilation measurement stations and improve the Beijing intense slow positron beam time using efficiency. Performance testing result of the plugged-in 22Na based slow positron beam facility are reviewed in this paper, with the measurement of the beam transport efficiency, the view of beam spot, the adjustment of beam position, the measurement of beam intensity and energy spread etc. included.

  19. Strategic Alignment of Business Intelligence

    OpenAIRE

    Cederberg, Niclas

    2010-01-01

    This thesis is about the concept of strategic alignment of business intelligence. It is based on a theoretical foundation that is used to define and explain business intelligence, data warehousing and strategic alignment. By combining a number of different methods for strategic alignment a framework for alignment of business intelligence is suggested. This framework addresses all different aspects of business intelligence identified as relevant for strategic alignment of business intelligence...

  20. A toolbox of metrology-based techniques for optical system alignment

    Science.gov (United States)

    Coulter, Phillip; Ohl, Raymond G.; Blake, Peter N.; Bos, Brent J.; Chambers, Victor J.; Eichhorn, William L.; Gum, Jeffrey S.; Hadjimichael, Theodore J.; Hagopian, John G.; Hayden, Joseph E.; Hetherington, Samuel E.; Kubalak, David A.; Mclean, Kyle F.; McMann, Joseph C.; Redman, Kevin W.; Sampler, Henry P.; Wenzel, Greg W.; Young, Jerrod L.

    2016-10-01

    The NASA Goddard Space Flight Center (GSFC) and its partners have broad experience in the alignment of flight optical instruments and spacecraft structures. Over decades, GSFC developed alignment capabilities and techniques for a variety of optical and aerospace applications. In this paper, we provide an overview of a subset of the capabilities and techniques used on several recent projects in a "toolbox" format. We discuss a range of applications, from small-scale optical alignment of sensors to mirror and bench examples that make use of various large-volume metrology techniques. We also discuss instruments and analytical tools.

  1. A Toolbox of Metrology-Based Techniques for Optical System Alignment

    Science.gov (United States)

    Coulter, Phillip; Ohl, Raymond G.; Blake, Peter N.; Bos, Brent J.; Eichhorn, William L.; Gum, Jeffrey S.; Hadjimichael, Theodore J.; Hagopian, John G.; Hayden, Joseph E.; Hetherington, Samuel E.; Kubalak, David A.; McLean, Kyle F.; McMann, Joseph; Redman, Kevin W.; Sampler, Henry P.; Wenzel, Greg W.; Young, Jerrod L.

    2016-01-01

    The NASA Goddard Space Flight Center (GSFC) and its partners have broad experience in the alignment of flight optical instruments and spacecraft structures. Over decades, GSFC developed alignment capabilities and techniques for a variety of optical and aerospace applications. In this paper, we provide an overview of a subset of the capabilities and techniques used on several recent projects in a "toolbox" format. We discuss a range of applications, from small-scale optical alignment of sensors to mirror and bench examples that make use of various large-volume metrology techniques. We also discuss instruments and analytical tools.

  2. Highly efficient growth of vertically aligned carbon nanotubes on Fe-Ni based metal alloy foils for supercapacitors

    Science.gov (United States)

    Amalina Raja Seman, Raja Noor; Asyadi Azam, Mohd; Ambri Mohamed, Mohd

    2016-12-01

    Supercapacitors are highly promising energy devices with superior charge storage performance and a long lifecycle. Construction of the supercapacitor cell, especially electrode fabrication, is critical to ensure good performance in applications. This work demonstrates direct growth of vertically aligned carbon nanotubes (CNTs) on Fe-Ni based metal alloy foils, namely SUS 310S, Inconel 600 and YEF 50, and their use in symmetric vertically aligned CNT supercapacitor electrodes. Alumina and cobalt thin film catalysts were deposited onto the foils, and then CNT growth was performed using alcohol catalytic chemical vapour deposition. By this method, vertically aligned CNTs were successfully grown and used directly as a binder-free supercapacitor electrode to deliver excellent electrochemical performance. The device showed relatively good specific capacitance, a superior rate capability and excellent cycle stability, maintaining about 96% capacitance up to 1000 cycles.

  3. Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets

    Directory of Open Access Journals (Sweden)

    Hoffmann Nils

    2012-08-01

    Full Text Available Abstract Background Modern analytical methods in biology and chemistry use separation techniques coupled to sensitive detectors, such as gas chromatography-mass spectrometry (GC-MS and liquid chromatography-mass spectrometry (LC-MS. These hyphenated methods provide high-dimensional data. Comparing such data manually to find corresponding signals is a laborious task, as each experiment usually consists of thousands of individual scans, each containing hundreds or even thousands of distinct signals. In order to allow for successful identification of metabolites or proteins within such data, especially in the context of metabolomics and proteomics, an accurate alignment and matching of corresponding features between two or more experiments is required. Such a matching algorithm should capture fluctuations in the chromatographic system which lead to non-linear distortions on the time axis, as well as systematic changes in recorded intensities. Many different algorithms for the retention time alignment of GC-MS and LC-MS data have been proposed and published, but all of them focus either on aligning previously extracted peak features or on aligning and comparing the complete raw data containing all available features. Results In this paper we introduce two algorithms for retention time alignment of multiple GC-MS datasets: multiple alignment by bidirectional best hits peak assignment and cluster extension (BIPACE and center-star multiple alignment by pairwise partitioned dynamic time warping (CeMAPP-DTW. We show how the similarity-based peak group matching method BIPACE may be used for multiple alignment calculation individually and how it can be used as a preprocessing step for the pairwise alignments performed by CeMAPP-DTW. We evaluate the algorithms individually and in combination on a previously published small GC-MS dataset studying the Leishmania parasite and on a larger GC-MS dataset studying grains of wheat (Triticum aestivum. Conclusions We

  4. Distributed processing (DP) based e-beam lithography simulation with long range correction algorithm in e-beam machine

    Science.gov (United States)

    Ki, Won-Tai; Choi, Ji-Hyeon; Kim, Byung-Gook; Woo, Sang-Gyun; Cho, Han-Ku

    2008-05-01

    As the design rule with wafer process is getting smaller down below 50nm node, the specification of CDs on a mask is getting more tightened. Therefore, more tight and accurate E-Beam Lithography simulation is highly required in these days. However, in reality most of E-Beam simulation cases, there is a trade-off relationship between the accuracy and the simulation speed. Moreover, the necessity of full chip based simulation has been increasing in order to estimate more accurate mask CDs based on real process condition. Therefore, without consideration of long range correction algorithm such as fogging effect and loading effect correction in E-beam machine, it would be impossible and meaningless to pursue the full chip based simulation. In this paper, we introduce a breakthrough method to overcome the obstacles of E-Beam simulation. In-house E-beam simulator, ELIS (E-beam LIthography Simulator), has been upgraded to solve these problems. First, DP (Distributed Processing) strategy was applied to improve calculation speed. Secondly, the long range correction algorithm of E-beam machine was also applied to compute intensity of exposure on a full chip based (Mask). Finally, ELIS-DP has been evaluated possibility of expecting or analyzing CDs on full chip base.

  5. Validation of the CLIC alignment strategy on short range

    CERN Document Server

    Mainaud Durand, H; Griffet, S; Kemppinen, J; Rude, V; Sosin, M

    2012-01-01

    The pre-alignment of CLIC consists of aligning the components of linacs and beam delivery systems (BDS) in the most accurate possible way, so that a first pilot beam can circulate and allow the implementation of the beam based alignment. Taking into account the precision and accuracy needed: 10 µm rms over sliding windows of 200m, this pre-alignment must be active and it can be divided into two parts: the determination of a straight reference over 20 km, thanks to a metrological network and the determination of the component positions with respect to this reference, and their adjustment. The second part is the object of the paper, describing the steps of the proposed strategy: firstly the fiducialisation of the different components of CLIC; secondly, the alignment of these components on common supports and thirdly the active alignment of these supports using sensors and actuators. These steps have been validated on a test setup over a length of 4m, and the obtained results are analysed.

  6. A GaAs-based self-aligned stripe distributed feedback laser

    Science.gov (United States)

    Lei, H.; Stevens, B. J.; Fry, P. W.; Babazadeh, N.; Ternent, G.; Childs, D. T.; Groom, K. M.

    2016-08-01

    We demonstrate operation of a GaAs-based self-aligned stripe (SAS) distributed feedback (DFB) laser. In this structure, a first order GaInP/GaAs index-coupled DFB grating is built within the p-doped AlGaAs layer between the active region and the n-doped GaInP opto-electronic confinement layer of a SAS laser structure. In this process no Al-containing layers are exposed to atmosphere prior to overgrowth. The use of AlGaAs cladding affords the luxury of full flexibility in upper cladding design, which proved necessary due to limitations imposed by the grating infill and overgrowth with the GaInP current block layer. Resultant devices exhibit single-mode lasing with high side-mode-suppression of >40 dB over the temperature range 20 °C-70 °C. The experimentally determined optical profile and grating confinement correlate well with those simulated using Fimmwave.

  7. Centered Kernel Alignment Enhancing Neural Network Pretraining for MRI-Based Dementia Diagnosis

    Directory of Open Access Journals (Sweden)

    David Cárdenas-Peña

    2016-01-01

    Full Text Available Dementia is a growing problem that affects elderly people worldwide. More accurate evaluation of dementia diagnosis can help during the medical examination. Several methods for computer-aided dementia diagnosis have been proposed using resonance imaging scans to discriminate between patients with Alzheimer’s disease (AD or mild cognitive impairment (MCI and healthy controls (NC. Nonetheless, the computer-aided diagnosis is especially challenging because of the heterogeneous and intermediate nature of MCI. We address the automated dementia diagnosis by introducing a novel supervised pretraining approach that takes advantage of the artificial neural network (ANN for complex classification tasks. The proposal initializes an ANN based on linear projections to achieve more discriminating spaces. Such projections are estimated by maximizing the centered kernel alignment criterion that assesses the affinity between the resonance imaging data kernel matrix and the label target matrix. As a result, the performed linear embedding allows accounting for features that contribute the most to the MCI class discrimination. We compare the supervised pretraining approach to two unsupervised initialization methods (autoencoders and Principal Component Analysis and against the best four performing classification methods of the 2014 CADDementia challenge. As a result, our proposal outperforms all the baselines (7% of classification accuracy and area under the receiver-operating-characteristic curve at the time it reduces the class biasing.

  8. A power beaming based infrastructure for space power

    Energy Technology Data Exchange (ETDEWEB)

    Bamberger, J.A.

    1991-08-01

    At present all space mission power requirements are met by integral, on-board, self-contained power systems. To provide needed flexibility for space exploration and colonization, an additional approach to on-board, self-contained power systems is needed. Power beaming, an alternative approach to providing power, has the potential to provide increased mission flexibility while reducing total mass launched into space. Laser-power beaming technology provides a viable power and communication infrastructure that can be developed sequentially as it is applied to power satellite constellations in Earth orbit and to orbital transport vehicles transferring satellites and cargos to geosynchronous orbit and beyond. Coupled with nuclear electric propulsion systems for cargo transport, the technology can be used to provide global power to the Lunar surface and to Mars' surface and moons. The technology can be developed sequentially as advances in power system and propulsion system technology occur. This paper presents stepwise development of an infrastructure based on power beaming that can support the space development and exploration goals of the Space Exploration Initiative. Power scenarios based on commonality of power systems hardware with cargo transport vehicles are described. Advantages of this infrastructure are described. 12 refs., 4 figs., 1 tab.

  9. Polarization tailored novel vector beams based on conical refraction

    CERN Document Server

    Turpin, A; Peinado, A; Lizana, A; Campos, J; Kalkandjiev, T K; Mompart, J

    2014-01-01

    Coherent vector beams with involved states of polarization (SOP) are widespread in the literature, having applications in laser processing, super-resolution imaging and particle trapping. We report novel vector beams obtained by transforming a Gaussian beam passing through a biaxial crystal, by means of the conical refraction phenomenon. We analyze both experimentally and theoretically the SOP of the different vector beams generated and demonstrate that the SOP of the input beam can be used to control both the shape and the SOP of the transformed beam. We also identify polarization singularities of such beams for the first time and demonstrate their control by the SOP of an input beam.

  10. Multiwave velocity analysis based on Gaussian beam prestack depth migration

    Institute of Scientific and Technical Information of China (English)

    Han Jian-Guang; Wang Yun; Han Ning; Xing Zhan-Tao; Lu Jun

    2014-01-01

    Prestack depth migration of multicomponent seismic data improves the imaging accuracy of subsurface complex geological structures. An accurate velocityfi eld is critical to accurate imaging. Gaussian beam migration was used to perform multicomponent migration velocity analysis of PP- and PS-waves. First, PP- and PS-wave Gaussian beam prestack depth migration algorithms that operate on common-offset gathers are presented to extract offset-domain common-image gathers of PP- and PS-waves. Second, based on the residual moveout equation, the migration velocity fields of P- and S-waves are updated. Depth matching is used to ensure that the depth of the target layers in the PP- and PS-wave migration profi les are consistent, and high-precision P- and S-wave velocities are obtained. Finally, synthetic andfi eld seismic data suggest that the method can be used effectively in multiwave migration velocity analysis.

  11. An infrared light polarized beam splitter based on graphene array

    Science.gov (United States)

    Chen, Dingbo; Yang, Junbo; Zhang, Jingjing; Wu, Wenjun; Huang, Jie; Zhang, Feifei; Wang, Hongqing

    2016-10-01

    Metamaterials have attracted a lot of attention in the past decade, because of its remarkable properties in electronics and photonics. Recently, a new kind of two-dimensional metamaterial named metasurface have led the research front. Metasurfaces show up excellent optical properties by patterning planar nanostructures. Novel optical phenomena based on graphene include ultra-thin focusing, anomalous reflection or refraction strong spin-orbit and so on. In this work, we have designed a novel infrared light polarized beam splitter by combining the 2D array of graphene with a subwavelength-thickness optical cavity, which demonstrated great splitting effect in infrared wavelength. Our demonstration pave a novel way for the infrared light polarized beam splitting.

  12. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2011-01-01

    A new set of muon alignment constants was approved in August. The relative position between muon chambers is essentially unchanged, indicating good detector stability. The main changes concern the global positioning of the barrel and of the endcap rings to match the new Tracker geometry. Detailed studies of the differences between track-based and optical alignment of DTs have proven to be a valuable tool for constraining Tracker alignment weak modes, and this information is now being used as part of the alignment procedure. In addition to the “split-cosmic” analysis used to investigate the muon momentum resolution at high momentum, a new procedure based on reconstructing the invariant mass of di-muons from boosted Zs is under development. Both procedures show an improvement in the momentum precision of Global Muons with respect to Tracker-only Muons. Recent developments in track-based alignment include a better treatment of the tails of residual distributions and accounting for correla...

  13. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2011-01-01

    The Muon Alignment work now focuses on producing a new track-based alignment with higher track statistics, making systematic studies between the results of the hardware and track-based alignment methods and aligning the barrel using standalone muon tracks. Currently, the muon track reconstruction software uses a hardware-based alignment in the barrel (DT) and a track-based alignment in the endcaps (CSC). An important task is to assess the muon momentum resolution that can be achieved using the current muon alignment, especially for highly energetic muons. For this purpose, cosmic ray muons are used, since the rate of high-energy muons from collisions is very low and the event statistics are still limited. Cosmics have the advantage of higher statistics in the pT region above 100 GeV/c, but they have the disadvantage of having a mostly vertical topology, resulting in a very few global endcap muons. Only the barrel alignment has therefore been tested so far. Cosmic muons traversing CMS from top to bottom are s...

  14. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    The main progress of the muon alignment group since March has been in the refinement of both the track-based alignment for the DTs and the hardware-based alignment for the CSCs. For DT track-based alignment, there has been significant improvement in the internal alignment of the superlayers inside the DTs. In particular, the distance between superlayers is now corrected, eliminating the residual dependence on track impact angles, and good agreement is found between survey and track-based corrections. The new internal geometry has been approved to be included in the forthcoming reprocessing of CRAFT samples. The alignment of DTs with respect to the tracker using global tracks has also improved significantly, since the algorithms use the latest B-field mapping, better run selection criteria, optimized momentum cuts, and an alignment is now obtained for all six degrees of freedom (three spatial coordinates and three rotations) of the aligned DTs. This work is ongoing and at a stage where we are trying to unders...

  15. Markov Random Field Based Automatic Image Alignment for ElectronTomography

    Energy Technology Data Exchange (ETDEWEB)

    Moussavi, Farshid; Amat, Fernando; Comolli, Luis R.; Elidan, Gal; Downing, Kenneth H.; Horowitz, Mark

    2007-11-30

    Cryo electron tomography (cryo-ET) is the primary method for obtaining 3D reconstructions of intact bacteria, viruses, and complex molecular machines ([7],[2]). It first flash freezes a specimen in a thin layer of ice, and then rotates the ice sheet in a transmission electron microscope (TEM) recording images of different projections through the sample. The resulting images are aligned and then back projected to form the desired 3-D model. The typical resolution of biological electron microscope is on the order of 1 nm per pixel which means that small imprecision in the microscope's stage or lenses can cause large alignment errors. To enable a high precision alignment, biologists add a small number of spherical gold beads to the sample before it is frozen. These beads generate high contrast dots in the image that can be tracked across projections. Each gold bead can be seen as a marker with a fixed location in 3D, which provides the reference points to bring all the images to a common frame as in the classical structure from motion problem. A high accuracy alignment is critical to obtain a high resolution tomogram (usually on the order of 5-15nm resolution). While some methods try to automate the task of tracking markers and aligning the images ([8],[4]), they require user intervention if the SNR of the image becomes too low. Unfortunately, cryogenic electron tomography (or cryo-ET) often has poor SNR, since the samples are relatively thick (for TEM) and the restricted electron dose usually results in projections with SNR under 0 dB. This paper shows that formulating this problem as a most-likely estimation task yields an approach that is able to automatically align with high precision cryo-ET datasets using inference in graphical models. This approach has been packaged into a publicly available software called RAPTOR-Robust Alignment and Projection estimation for Tomographic Reconstruction.

  16. CTSS: a robust and efficient method for protein structure alignment based on local geometrical and biological features.

    Science.gov (United States)

    Can, Tolga; Wang, Yuan-Fang

    2003-01-01

    We present a new method for conducting protein structure similarity searches, which improves on the accuracy, robustness, and efficiency of some existing techniques. Our method is grounded in the theory of differential geometry on 3D space curve matching. We generate shape signatures for proteins that are invariant, localized, robust, compact, and biologically meaningful. To improve matching accuracy, we smooth the noisy raw atomic coordinate data with spline fitting. To improve matching efficiency, we adopt a hierarchical coarse-to-fine strategy. We use an efficient hashing-based technique to screen out unlikely candidates and perform detailed pairwise alignments only for a small number of candidates that survive the screening process. Contrary to other hashing based techniques, our technique employs domain specific information (not just geometric information) in constructing the hash key, and hence, is more tuned to the domain of biology. Furthermore, the invariancy, localization, and compactness of the shape signatures allow us to utilize a well-known local sequence alignment algorithm for aligning two protein structures. One measure of the efficacy of the proposed technique is that we were able to discover new, meaningful motifs that were not reported by other structure alignment methods.

  17. Comparing Ray-Based and Wave-Based Models of Cross-Beam Energy Transfer

    Science.gov (United States)

    Follett, R. K.; Edgell, D. H.; Shaw, J. G.; Froula, D. H.; Myatt, J. F.

    2016-10-01

    Ray-based models of cross-beam energy transfer (CBET) are used in radiation-hydrodynamics codes to calculate laser-energy deposition. The accuracy of ray-based CBET models is limited by assumptions about the polarization and phase of the interacting laser beams and by the use of a paraxial Wentzel-Kramers-Brillouin (WKB) approximation. A 3-D wave-based solver (LPSE-CBET) is used to study the nonlinear interaction between overlapping laser beams in underdense plasma. A ray-based CBET model is compared to the wave-based model and shows good agreement in simple geometries where the assumptions of the ray-based model are satisfied. Near caustic surfaces, the assumptions of the ray-based model break down and the calculated energy transfer deviates from wave-based calculations. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  18. Study of Charge Transport in Vertically Aligned Nitride Nanowire Based Core Shell P-I-N Junctions

    Science.gov (United States)

    2016-07-01

    Vertically- Aligned Nitride Nanowire Based Core Shell P-I-N Junctions Distribution Statement A. Approved for public release; distribution is...structures and further refinement of the design, 2) development of growth expertise for control of defects, dopants, and morphology in both thin films and...shape and morphology , (b) defect free smooth surface of the etched side-walls and base plane, (c) ability to tailor profiles for specific designs, and

  19. Free vibration of functionally graded beams based on both classical and first-order shear deformation beam theories

    Institute of Scientific and Technical Information of China (English)

    李世荣; 万泽青; 张静华

    2014-01-01

    The free vibration of functionally graded material (FGM) beams is studied based on both the classical and the first-order shear deformation beam theories. The equations of motion for the FGM beams are derived by considering the shear deforma-tion and the axial, transversal, rotational, and axial-rotational coupling inertia forces on the assumption that the material properties vary arbitrarily in the thickness direction. By using the numerical shooting method to solve the eigenvalue problem of the coupled ordinary differential equations with different boundary conditions, the natural frequen-cies of the FGM Timoshenko beams are obtained numerically. In a special case of the classical beam theory, a proportional transformation between the natural frequencies of the FGM and the reference homogenous beams is obtained by using the mathematical similarity between the mathematical formulations. This formula provides a simple and useful approach to evaluate the natural frequencies of the FGM beams without dealing with the tension-bending coupling problem. Approximately, this analogous transition can also be extended to predict the frequencies of the FGM Timoshenko beams. The numerical results obtained by the shooting method and those obtained by the analogous transformation are presented to show the effects of the material gradient, the slenderness ratio, and the boundary conditions on the natural frequencies in detail.

  20. The generation of arbitrary vector beams using a division of a wavefront-based setup

    Science.gov (United States)

    Kalita, Ranjan; Gaffar, Md; Boruah, Bosanta R.

    2016-07-01

    In this paper, we introduce an arbitrary vector-beam-forming scheme using a simple arrangement involving only one liquid crystal spatial light modulator. An arbitrary vector beam can be obtained by overlapping two orthogonally polarized beams. In most of the existing vector-beam-forming schemes the two orthogonally polarized beams are essentially copies of a single incident wavefront. However, in the proposed scheme the two orthogonally polarized beams correspond to two separated parts of a single incident wavefront. Taking a cue from the two-beam interference phenomenon, the present scheme can be referred to as a division of a wavefront-based scheme. The proposed setup offers certain important advantages and is more suitable for the generation of higher average-power vector beams. We demonstrate the working of the vector-beam-forming scheme by generating various vector beams such as radially polarized, azimuthally polarized, and Bessel-Gauss beams and also a boat-shaped beam in the focal volume of a low-numerical-aperture focusing lens. The boat-shaped beam comprises a dark center surrounded by intense light from all but one direction. The beam is realized at the focus of an azimuthally polarized beam in the presence of a moderate amount of coma in the beam. The experimental results obtained using the proposed setup are verified by comparing them with the theoretical results.

  1. Beam Pattern Synthesis Based on Hybrid Optimization Algorithm

    Institute of Scientific and Technical Information of China (English)

    YU Yan-li; WANG Ying-min; LI Lei

    2010-01-01

    As conventional methods for beam pattern synthesis can not always obtain the desired optimum pattern for the arbitrary underwater acoustic sensor arrays, a hybrid numerical synthesis method based on adaptive principle and genetic algorithm was presented in this paper. First, based on the adaptive theory, a given array was supposed as an adaptive array and its sidelobes were reduced by assigning a number of interference signals in the sidelobe region. An initial beam pattern was obtained after several iterations and adjustments of the interference intensity, and based on its parameters, a desired pattern was created. Then, an objective function based on the difference between the designed and desired patterns can be constructed. The pattern can be optimized by using the genetic algorithm to minimize the objective function. A design example for a double-circular array demonstrates the effectiveness of this method. Compared with the approaches existing before, the proposed method can reduce the sidelobe effectively and achieve less synthesis magnitude error in the mainlobe.The method can search for optimum attainable pattern for the specific elements if the desired pattern can not be found.

  2. A similarity-based framework for the alignment of an ontology for remote sensing

    Science.gov (United States)

    Farah, Mohamed; Nefzi, Hafedh; Farah, Imed Riadh

    2016-11-01

    Building remote sensing (RS) ontologies can undoubtedly help automatic interpretation of RS images content. Ontology alignment is proven to be an effective ontology building process that enables reusing already existing semantic resources. The quality of the ontology alignment output highly depends on the similarity measures that have been considered as well as the way they are combined together. In the literature, research on similarity measures mainly focuses on how to build new or refine already existing similarity measures leading to a wide range of measures. However, few research addresses their dependencies and combination in order to evaluate the overall similarity of the concepts to be compared. In this paper, we first show how to select a reduced set of similarity measures to be used in the alignment process. Afterwards, we present a ranking model that allows sorting mappings between concepts coming from two different ontologies in a decreasing order of global similarity score. First experimentation shows that the proposed approach is promising.

  3. Tunable polarization beam splitter based on optofluidic ring resonator.

    Science.gov (United States)

    Zhu, Song; Liu, Yang; Shi, Lei; Xu, Xinbiao; Yuan, Shixing; Liu, Ningyu; Zhang, Xinliang

    2016-07-25

    An efficient polarization beam splitter (PBS) based on an optofluidic ring resonator (OFRR) is proposed and experimentally demonstrated. The PBS relies on the large effective refractive index difference between transverse-electric (TE) and transverse-magnetic (TM) polarization states, since the silica-microcapillary-based OFRR possesses a slab-like geometry configuration in the cross section through which the circulating light travels. To the best of our knowledge, this is the first OFRR-based PBS. In our work, the maximum polarization splitting ratio of up to 30 dB is achieved. Besides, water and ethanol are pumped into the core of the silica microcapillary respectively, and the maximum wavelength tuning range of 7.02 nm is realized when ethanol flows through the core, verifing the tuning principle of the PBS effectively. With such a good performance and simple scheme, this OFRR-based PBS is promising for applications such as tunable optical filters, demultiplexers, and routers.

  4. Application of vertex and mass constraints in track-based alignment

    CERN Document Server

    Amoraal, J; Blusk, S; Borghi, S; Cattaneo, M; Chiapolini, N; Conti, G; Deissenroth, M; Dupertuis, F; van der Eijk, R; Fave, V; Gersabeck, M; Hicheur, A; Hulsbergen, W; Hutchcroft, D; Kozlinskiy, A; Lambert, R W; Maciuc, F; Märki, R; Martinelli, M; Merk, M; Needham, M; Nicolas, L; Palacios, J; Parkes, C; Pellegrino, A; Pozzi, S; Raven, G; Rodrigues, E; Salzmann, C; Schiller, M; Schneider, O; Simioni, E; Steinkamp, O; van Tilburg, J; Tuning, N; Uwer, U; Vecchi, S; Viret, S

    2013-01-01

    The software alignment of planar tracking detectors using samples of charged particle trajectories may lead to global detector distortions that affect vertex and momentum resolution. We present an alignment procedure that constrains such distortions by making use of samples of decay vertices reconstructed from two or more trajectories and putting constraints on their invariant mass. We illustrate the method by using a sample of invariant-mass constrained vertices from D^0 --> K^- pi^+ decays to remove a curvature bias in the LHCb spectrometer.

  5. CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping

    Directory of Open Access Journals (Sweden)

    Shi Weisong

    2011-06-01

    Full Text Available Abstract Background Research in genetics has developed rapidly recently due to the aid of next generation sequencing (NGS. However, massively-parallel NGS produces enormous amounts of data, which leads to storage, compatibility, scalability, and performance issues. The Cloud Computing and MapReduce framework, which utilizes hundreds or thousands of shared computers to map sequencing reads quickly and efficiently to reference genome sequences, appears to be a very promising solution for these issues. Consequently, it has been adopted by many organizations recently, and the initial results are very promising. However, since these are only initial steps toward this trend, the developed software does not provide adequate primary functions like bisulfite, pair-end mapping, etc., in on-site software such as RMAP or BS Seeker. In addition, existing MapReduce-based applications were not designed to process the long reads produced by the most recent second-generation and third-generation NGS instruments and, therefore, are inefficient. Last, it is difficult for a majority of biologists untrained in programming skills to use these tools because most were developed on Linux with a command line interface. Results To urge the trend of using Cloud technologies in genomics and prepare for advances in second- and third-generation DNA sequencing, we have built a Hadoop MapReduce-based application, CloudAligner, which achieves higher performance, covers most primary features, is more accurate, and has a user-friendly interface. It was also designed to be able to deal with long sequences. The performance gain of CloudAligner over Cloud-based counterparts (35 to 80% mainly comes from the omission of the reduce phase. In comparison to local-based approaches, the performance gain of CloudAligner is from the partition and parallel processing of the huge reference genome as well as the reads. The source code of CloudAligner is available at http

  6. A laser beam quality definition based on induced temperature rise.

    Science.gov (United States)

    Miller, Harold C

    2012-12-17

    Laser beam quality metrics like M(2) can be used to describe the spot sizes and propagation behavior of a wide variety of non-ideal laser beams. However, for beams that have been diffracted by limiting apertures in the near-field, or those with unusual near-field profiles, the conventional metrics can lead to an inconsistent or incomplete description of far-field performance. This paper motivates an alternative laser beam quality definition that can be used with any beam. The approach uses a consideration of the intrinsic ability of a laser beam profile to heat a material. Comparisons are made with conventional beam quality metrics. An analysis on an asymmetric Gaussian beam is used to establish a connection with the invariant beam propagation ratio.

  7. The cytodisk: A cytometer based upon a new principle of cell alignment

    NARCIS (Netherlands)

    Grooth, de B.G.; Geerken, T.H.; Greve, J.

    1985-01-01

    A new method is described for one-dimensional alignment of small particles such as biological cells. A drop of the particle suspension is spread out on a flat disk or plate equipped with V-shaped grooves such as are present on a gramophone disk. After drying, the particles are located on the bottom

  8. Reputation-based ontology alignment for autonomy and interoperability in distributed access control

    NARCIS (Netherlands)

    Trivellato, Daniel; Spiessens, Fred; Zannone, Nicola; Etalle, Sandro

    2009-01-01

    Vocabulary alignment is a main challenge in distributedaccess control as peers should understand each other’spolicies unambiguously. Ontologies enable mutual understanding among peers by providing a precise semantics to concepts and relationships in a domain. However, due to the distributed nature o

  9. Dual-beam laser autofocusing system based on liquid lens

    Science.gov (United States)

    Zhang, Fumin; Yao, Yannan; Qu, Xinghua; Zhang, Tong; Pei, Bing

    2017-02-01

    A dual-beam laser autofocusing system is designed in this paper. The autofocusing system is based on a liquid lens with less moving parts and fast response time, which makes the system simple, reliable, compact and fast. A novel scheme "Time-sharing focus, fast conversion" is innovatively proposed. The scheme effectively solves the problem that the guiding laser and the working laser cannot focus at the same target point because of the existence of chromatic aberration. This scheme not only makes both guiding laser and working laser achieve optimal focusing in guiding stage and working stage respectively, but also greatly reduces the system complexity and simplifies the focusing process as well as makes autofocusing time of the working laser reduce to about 10 ms. In the distance range of 1 m to 30 m, the autofocusing spot size is kept under 4.3 mm at 30 m and just 0.18 mm at 1 m. The spot size is much less influenced by the target distance compared with the collimated laser with a micro divergence angle for its self-adaptivity. The dual-beam laser autofocusing system based on liquid lens is fully automatic, compact and efficient. It is fully meet the need of dynamicity and adaptivity and it will play an important role in a number of long-range control applications.

  10. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    Since December, the muon alignment community has focused on analyzing the data recorded so far in order to produce new DT and CSC Alignment Records for the second reprocessing of CRAFT data. Two independent algorithms were developed which align the DT chambers using global tracks, thus providing, for the first time, a relative alignment of the barrel with respect to the tracker. These results are an important ingredient for the second CRAFT reprocessing and allow, for example, a more detailed study of any possible mis-modelling of the magnetic field in the muon spectrometer. Both algorithms are constructed in such a way that the resulting alignment constants are not affected, to first order, by any such mis-modelling. The CSC chambers have not yet been included in this global track-based alignment due to a lack of statistics, since only a few cosmics go through the tracker and the CSCs. A strategy exists to align the CSCs using the barrel as a reference until collision tracks become available. Aligning the ...

  11. Alignment validation

    Energy Technology Data Exchange (ETDEWEB)

    ALICE; ATLAS; CMS; LHCb; Golling, Tobias

    2008-09-06

    The four experiments, ALICE, ATLAS, CMS and LHCb are currently under constructionat CERN. They will study the products of proton-proton collisions at the Large Hadron Collider. All experiments are equipped with sophisticated tracking systems, unprecedented in size and complexity. Full exploitation of both the inner detector andthe muon system requires an accurate alignment of all detector elements. Alignmentinformation is deduced from dedicated hardware alignment systems and the reconstruction of charged particles. However, the system is degenerate which means the data is insufficient to constrain all alignment degrees of freedom, so the techniques are prone to converging on wrong geometries. This deficiency necessitates validation and monitoring of the alignment. An exhaustive discussion of means to validate is subject to this document, including examples and plans from all four LHC experiments, as well as other high energy experiments.

  12. Displacement Analysis of Building Movement by using the Survey of Align Network at KOMAC

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dae-Il; Seo, Dong-Hyuk; Ahn, Tae-Sung; Kwon, Hyeok-Jung; Kim, Han-Sung; Cho, Yong-Sub [Korea Atomic Energy Research Institute, Gyeongju (Korea, Republic of)

    2014-10-15

    100MeV proton linac has been operated and provided to beam users in KOMAC (Korea Multi-purpose Accelerator Complex). Proton linac is composed of a 50keV proton injector, a 3MeV RFQ, 20MeV DTL tanks, 100MeV DTL tanks, beam dump and beam line for 20MeV and 100MeV. To align the accelerator components, the align networks based on reference point were installed on the wall inside tunnel. The survey works of align networks were accomplished by using the laser tracker. In this paper, the survey of align networks is performed and its results are presented. In recent survey of align networks, it was monitored to move the locations. The analysis of displacement was confirmed by compare the align networks. This analysis was used to re-align the accelerator components which can be compensated location of reference points. The displacement monitoring should be performed during the long-term period and need to find the other method for real-time, not the survey of align networks.

  13. RF Jitter Modulation Alignment Sensing

    Science.gov (United States)

    Ortega, L. F.; Fulda, P.; Diaz-Ortiz, M.; Perez Sanchez, G.; Ciani, G.; Voss, D.; Mueller, G.; Tanner, D. B.

    2017-01-01

    We will present the numerical and experimental results of a new alignment sensing scheme which can reduce the complexity of alignment sensing systems currently used, while maintaining the same shot noise limited sensitivity. This scheme relies on the ability of electro-optic beam deflectors to create angular modulation sidebands in radio frequency, and needs only a single-element photodiode and IQ demodulation to generate error signals for tilt and translation degrees of freedom in one dimension. It distances itself from current techniques by eliminating the need for beam centering servo systems, quadrant photodetectors and Gouy phase telescopes. RF Jitter alignment sensing can be used to reduce the complexity in the alignment systems of many laser optical experiments, including LIGO and the ALPS experiment.

  14. Multiple sequence alignment based on combining genetic algorithm with chaotic sequences.

    Science.gov (United States)

    Gao, C; Wang, B; Zhou, C J; Zhang, Q

    2016-06-24

    In bioinformatics, sequence alignment is one of the most common problems. Multiple sequence alignment is an NP (nondeterministic polynomial time) problem, which requires further study and exploration. The chaos optimization algorithm is a type of chaos theory, and a procedure for combining the genetic algorithm (GA), which uses ergodicity, and inherent randomness of chaotic iteration. It is an efficient method to solve the basic premature phenomenon of the GA. Applying the Logistic map to the GA and using chaotic sequences to carry out the chaotic perturbation can improve the convergence of the basic GA. In addition, the random tournament selection and optimal preservation strategy are used in the GA. Experimental evidence indicates good results for this process.

  15. Optimization of solenoid based low energy beam transport line for high current H+ beams

    Science.gov (United States)

    Pande, R.; Singh, P.; Rao, S. V. L. S.; Roy, S.; Krishnagopal, S.

    2015-02-01

    A 20 MeV, 30 mA CW proton linac is being developed at BARC, Mumbai. This linac will consist of an ECR ion source followed by a Radio Frequency Quadrupole (RFQ) and Drift tube Linac (DTL). The low energy beam transport (LEBT) line is used to match the beam from the ion source to the RFQ with minimum beam loss and increase in emittance. The LEBT is also used to eliminate the unwanted ions like H2+ and H3+ from entering the RFQ. In addition, space charge compensation is required for transportation of such high beam currents. All this requires careful design and optimization. Detailed beam dynamics simulations have been done to optimize the design of the LEBT using the Particle-in-cell code TRACEWIN. We find that with careful optimization it is possible to transport a 30 mA CW proton beam through the LEBT with 100% transmission and minimal emittance blow up, while at the same time suppressing unwanted species H2+ and H3+ to less than 3.3% of the total beam current.

  16. Complementary characterization data in support of uniaxially aligned electrospun nanocomposites based on a model PVOH-epoxy system

    Directory of Open Access Journals (Sweden)

    Samaneh Karimi

    2016-06-01

    Full Text Available This paper presents complementary data corresponding to characterization tests done for our research article entitled “Uniaxially aligned electrospun fibers for advanced nanocomposites based on a model PVOH-epoxy system” (Karimi et al., 2016 [1]. Poly(vinyl alcohol and epoxy resin were selected as a model system and the effect of electrospun fiber loading on polymer properties was examined in conjunction with two manufacturing methods. A novel electrospinning technology for production of uniaxially aligned nanofiber arrays was used. A conventional wet lay-up fabrication method is compared against a novel, hybrid electrospinning–electrospraying approach. The structure and thermomechanical properties of resulting composite materials were examined using scanning electron microscopy, dynamic mechanical analysis, thermogravimetric analysis, differential scanning calorimetry, Fourier transform infrared spectroscopy, and tensile testing. For discussion of obtained results please refer to the research paper (Karimi et al., 2016 [1].

  17. Complementary characterization data in support of uniaxially aligned electrospun nanocomposites based on a model PVOH-epoxy system

    Science.gov (United States)

    Karimi, Samaneh; Staiger, Mark P.; Buunk, Neil; Fessard, Alison; Tucker, Nick

    2016-01-01

    This paper presents complementary data corresponding to characterization tests done for our research article entitled “Uniaxially aligned electrospun fibers for advanced nanocomposites based on a model PVOH-epoxy system” (Karimi et al., 2016) [1]. Poly(vinyl alcohol) and epoxy resin were selected as a model system and the effect of electrospun fiber loading on polymer properties was examined in conjunction with two manufacturing methods. A novel electrospinning technology for production of uniaxially aligned nanofiber arrays was used. A conventional wet lay-up fabrication method is compared against a novel, hybrid electrospinning–electrospraying approach. The structure and thermomechanical properties of resulting composite materials were examined using scanning electron microscopy, dynamic mechanical analysis, thermogravimetric analysis, differential scanning calorimetry, Fourier transform infrared spectroscopy, and tensile testing. For discussion of obtained results please refer to the research paper (Karimi et al., 2016) [1]. PMID:26977430

  18. Complementary characterization data in support of uniaxially aligned electrospun nanocomposites based on a model PVOH-epoxy system.

    Science.gov (United States)

    Karimi, Samaneh; Staiger, Mark P; Buunk, Neil; Fessard, Alison; Tucker, Nick

    2016-06-01

    This paper presents complementary data corresponding to characterization tests done for our research article entitled "Uniaxially aligned electrospun fibers for advanced nanocomposites based on a model PVOH-epoxy system" (Karimi et al., 2016) [1]. Poly(vinyl alcohol) and epoxy resin were selected as a model system and the effect of electrospun fiber loading on polymer properties was examined in conjunction with two manufacturing methods. A novel electrospinning technology for production of uniaxially aligned nanofiber arrays was used. A conventional wet lay-up fabrication method is compared against a novel, hybrid electrospinning-electrospraying approach. The structure and thermomechanical properties of resulting composite materials were examined using scanning electron microscopy, dynamic mechanical analysis, thermogravimetric analysis, differential scanning calorimetry, Fourier transform infrared spectroscopy, and tensile testing. For discussion of obtained results please refer to the research paper (Karimi et al., 2016) [1].

  19. Eigen-Direction Alignment Based Physical-Layer Network Coding for MIMO Two-Way Relay Channels

    CERN Document Server

    Yang, Tao; Ping, Li; Collings, Iain B; Yuan, Jinhong

    2012-01-01

    In this paper, we propose a novel communication strategy which incorporates physical-layer network coding (PNC) into multiple-input multiple output (MIMO) two-way relay channels (TWRCs). At the heart of the proposed scheme lies a new key technique referred to as eigen-direction alignment (EDA) precoding. The EDA precoding efficiently aligns the two-user's eigen-modes into the same directions. Based on that, we carry out multi-stream PNC over the aligned eigen-modes. We derive an achievable rate of the proposed EDA-PNC scheme, based on nested lattice codes, over a MIMO TWRC. Asymptotic analysis shows that the proposed EDA-PNC scheme approaches the capacity upper bound as the number of user antennas increases towards infinity. For a finite number of user antennas, we formulate the design criterion of the optimal EDA precoder and present solutions. Numerical results show that there is only a marginal gap between the achievable rate of the proposed EDA-PNC scheme and the capacity upper bound of the MIMO TWRC, in ...

  20. Morphing Downwind-Aligned Rotor Concept Based on a 13-MW Wind Turbine

    Energy Technology Data Exchange (ETDEWEB)

    Ichter, Brian; Steele, Adam; Loth, Eric; Moriarty, Patrick; Selig, Michael

    2016-04-01

    To alleviate the mass-scaling issues associated with conventional upwind rotors of extreme-scale wind turbines (>/=10 MW), a morphing downwind-aligned rotor (MoDaR) concept is proposed herein. The concept employs a downwind rotor with blades whose elements are stiff (no intentional flexibility) but with hub-joints that can be unlocked to allow for moment-free downwind alignment. Aligning the combination of gravitational, centrifugal and thrust forces along the blade path reduces downwind cantilever loads, resulting in primarily tensile loading. For control simplicity, the blade curvature can be fixed with a single morphing degree of freedom using a near-hub joint for coning angle: 22 degrees at rated conditions. The conventional baseline was set as the 13.2-MW Sandia 100-m all glass blade in a three-bladed upwind configuration. To quantify potential mass savings, a downwind load-aligning, two-bladed rotor was designed. Because of the reduced number of blades, the MoDaR concept had a favorable 33% mass reduction. The blade reduction and coning led to a reduction in rated power, but morphing increased energy capture at lower speeds such that both the MoDaR and conventional rotors have the same average power: 5.4 MW. A finite element analysis showed that quasi-steady structural stresses could be reduced, over a range of operating wind speeds and azimuthal angles, despite the increases in loading per blade. However, the concept feasibility requires additional investigation of the mass, cost and complexity of the morphing hinge, the impact of unsteady aeroelastic influence because of turbulence and off-design conditions, along with system-level Levelized Cost of Energy analysis.

  1. Beam Diagnostics for Laser Undulator Based on Compton Backward Scattering

    CERN Document Server

    Kuroda, R

    2005-01-01

    A compact soft X-ray source is required in various research fields such as material and biological science. The laser undulator based on Compton backward scattering has been developed as a compact soft X-ray source for the biological observation at Waseda University. It is performed in a water window region (250eV - 500 eV) using the interaction between 1047 nm Nd:YLF laser (10ps FWHM) and about 5 MeV high quality electron beam (10ps FWHM) generated from rf gun system. The range of X-ray energy in the water window region has K-shell absorption edges of Oxygen, Carbon and Nitrogen, which mainly constitute of living body. Since the absorption coefficient of water is much smaller than the protein's coefficient in this range, a dehydration of the specimens is not necessary. To generate the soft X-ray pulse stably, the electron beam diagnostics have been developed such as the emittance measurement using double slit scan technique, the bunch length measurement using two frequency analysis technique. In this confere...

  2. First platinum moderated positron beam based on neutron capture

    CERN Document Server

    Hugenschmidt, C; Repper, R; Schreckenbach, K; Sperr, P; Triftshaeuser, W

    2002-01-01

    A positron beam based on absorption of high energy prompt gamma-rays from thermal neutron capture in sup 1 sup 1 sup 3 Cd was installed at a neutron guide of the high flux reactor at the ILL in Grenoble. Measurements were performed for various source geometries, dependent on converter mass, moderator surface and extraction voltages. The results lead to an optimised design of the in-pile positron source which will be implemented at the Munich research reactor FRM-II. The positron source consists of platinum foils acting as gamma-e sup + e sup - -converter and positron moderator. Due to the negative positron work function moderation in heated platinum leads to emission of monoenergetic positrons. The positron work function of polycrystalline platinum was determined to 1.95(5) eV. After acceleration to several keV by four electrical lenses the beam was magnetically guided in a solenoid field of 7.5 mT leading to a NaI-detector in order to detect the 511 keV gamma-radiation of the annihilating positrons. The posi...

  3. Magnetic axis alignment and the Poisson alignment reference system

    Science.gov (United States)

    Griffith, Lee V.; Schenz, Richard F.; Sommargren, Gary E.

    1989-01-01

    Three distinct metrological operations are necessary to align a free-electron laser (FEL): the magnetic axis must be located, a straight line reference (SLR) must be generated, and the magnetic axis must be related to the SLR. This paper begins with a review of the motivation for developing an alignment system that will assure better than 100 micrometer accuracy in the alignment of the magnetic axis throughout an FEL. The paper describes techniques for identifying the magnetic axis of solenoids, quadrupoles, and wiggler poles. Propagation of a laser beam is described to the extent of revealing sources of nonlinearity in the beam. Development and use of the Poisson line, a diffraction effect, is described in detail. Spheres in a large-diameter laser beam create Poisson lines and thus provide a necessary mechanism for gauging between the magnetic axis and the SLR. Procedures for installing FEL components and calibrating alignment fiducials to the magnetic axes of the components are also described. An error budget shows that the Poisson alignment reference system will make it possible to meet the alignment tolerances for an FEL.

  4. High Performance Flexible Piezoelectric Nanogenerators based on BaTiO3 Nanofibers in Different Alignment Modes.

    Science.gov (United States)

    Yan, Jing; Jeong, Young Gyu

    2016-06-22

    Piezoelectric nanogenerators, harvesting energy from mechanical stimuli in our living environments, hold great promise to power sustainable self-sufficient micro/nanosystems and mobile/portable electronics. BaTiO3 as a lead-free material with high piezoelectric coefficient and dielectric constant has been widely examined to realize nanogenerators, capacitors, sensors, etc. In this study, polydimethylsiloxane (PDMS)-based flexible composites including BaTiO3 nanofibers with different alignment modes were manufactured and their piezoelectric performance was examined. For the study, BaTiO3 nanofibers were prepared by an electrospinning technique utilizing a sol-gel precursor and following calcination process, and they were then aligned vertically or horizontally or randomly in PDMS matrix-based nanogenerators. The morphological structures of BaTiO3 nanofibers and their nanogenerators were analyzed by using SEM images. The crystal structures of the nanogenerators before and after poling were characterized by X-ray diffraction. The dielectric and piezoelectric properties of the nanogenerators were investigated as a function of the nanofiber alignment mode. The nanogenerator with BaTiO3 nanofibers aligned vertically in the PDMS matrix sheet achieved high piezoelectric performance of an output power of 0.1841 μW with maximum voltage of 2.67 V and current of 261.40 nA under a low mechanical stress of 0.002 MPa, in addition to a high dielectric constant of 40.23 at 100 Hz. The harvested energy could thus power a commercial LED directly or be stored into capacitors after rectification.

  5. Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

    Directory of Open Access Journals (Sweden)

    Daniels Noah M

    2012-10-01

    Full Text Available Abstract Background The quality of multiple protein structure alignments are usually computed and assessed based on geometric functions of the coordinates of the backbone atoms from the protein chains. These purely geometric methods do not utilize directly protein sequence similarity, and in fact, determining the proper way to incorporate sequence similarity measures into the construction and assessment of protein multiple structure alignments has proved surprisingly difficult. Results We present Formatt, a multiple structure alignment based on the Matt purely geometric multiple structure alignment program, that also takes into account sequence similarity when constructing alignments. We show that Formatt outperforms Matt and other popular structure alignment programs on the popular HOMSTRAD benchmark. For the SABMark twilight zone benchmark set that captures more remote homology, Formatt and Matt outperform other programs; depending on choice of embedded sequence aligner, Formatt produces either better sequence and structural alignments with a smaller core size than Matt, or similarly sized alignments with better sequence similarity, for a small cost in average RMSD. Conclusions Considering sequence information as well as purely geometric information seems to improve quality of multiple structure alignments, though defining what constitutes the best alignment when sequence and structural measures would suggest different alignments remains a difficult open question.

  6. Performance of positive ion based high power ion source of EAST neutral beam injector

    Science.gov (United States)

    Hu, Chundong; Xie, Yahong; Xie, Yuanlai; Liu, Sheng; Xu, Yongjian; Liang, Lizhen; Jiang, Caichao; Li, Jun; Liu, Zhimin

    2016-02-01

    The positive ion based source with a hot cathode based arc chamber and a tetrode accelerator was employed for a neutral beam injector on the experimental advanced superconducting tokamak (EAST). Four ion sources were developed and each ion source has produced 4 MW @ 80 keV hydrogen beam on the test bed. 100 s long pulse operation with modulated beam has also been tested on the test bed. The accelerator was upgraded from circular shaped to diamond shaped in the latest two ion sources. In the latest campaign of EAST experiment, four ion sources injected more than 4 MW deuterium beam with beam energy of 60 keV into EAST.

  7. Vortex beam generation based on a fiber array combining and propagation through a turbulent atmosphere

    Science.gov (United States)

    Aksenov, V. P.; Dudorov, V. V.; Kolosov, V. V.

    2016-09-01

    We suggest a technique for generation of optical vortex beams with a variable orbital angular momentum based on a fiber laser array. The technique uses the phase control of each single subbeam. Requirements for the number of subbeams and the spatial arrangement for the vortex beam generation are determined. The propagation dynamics of a vortex beam synthesized is compared with that of a continuous Laguerre-Gaussian beam in free space and in a turbulent atmosphere. Spectral properties of a beam synthesized, which is represented as a superposition of different azimuth modes, are determined during its free-space propagation. It is shown that energy and statistical parameters coincide for synthesized and continuous vortex beams when propagating through a turbulent medium. Probability density functions of the beam intensity fluctuations are well approximated to a gamma distribution in the cases where the scintillation index is lower than unity independently of the beam type and observation point position relative to the propagation axis.

  8. Design for an accelerator-based orthogonal epithermal neutron beam for boron neutron capture therapy.

    Science.gov (United States)

    Allen, D A; Beynon, T D; Green, S

    1999-01-01

    This paper is concerned with the proposed Birmingham accelerator-based epithermal neutron beam for boron neutron capture therapy (BNCT). In particular, the option of producing a therapy beam at an orthogonal direction to the incoming protons is considered. Monte Carlo radiation transport simulations, both with and without a head phantom, have shown that an orthogonal beam geometry is not only acceptable but is indeed beneficial, in terms of a lower mean neutron energy and an enhanced therapeutic ratio for the same useful neutron fluence in the therapy beam. Typical treatment times for various beam options have been calculated, and range from 20 to 48 min with a 5 mA beam of 2.8 MeV protons, if the maximum photon-equivalent dose delivered to healthy tissue is to be 12.6 Gy Eq. The effects of proton beam diameter upon the therapy beam parameters have also been considered.

  9. Dose calculation based on Cone Beam CT images

    DEFF Research Database (Denmark)

    Slot Thing, Rune

    , several other factors contributing to the image quality degradation, and while one should, theoretically, be able to obtain CT-like image quality from CBCT scans, clinical image quality is often very far from this ideal realisation. The present thesis describes the investigation of potential image quality...... improvements in clinical CBCT imaging achieved through post-processing of the clinical image data. A Monte Carlo model was established to predict patient specific scattered radiation in CBCT imaging, based on anatomical information from the planning CT scan. This allowed the time consuming Monte Carlo......Cone beam CT (CBCT) imaging is frequently used in modern radiotherapy to ensure the proper positioning of the patient prior to each treatment fraction. With the increasing use of CBCT imaging for image guidance, interest has grown in exploring the potential use of these 3– or 4–D medical images...

  10. SAR IMAGE ENHANCEMENT BASED ON BEAM SHARPENING TECHNIQUE

    Institute of Scientific and Technical Information of China (English)

    LIYong; ZI-IANGKun-hui; ZHUDai-yin; ZHUZhao-da

    2004-01-01

    A major problem encountered in enhancing SAR image is the total loss of phase information and the unknown parameters of imaging system. The beam sharpening technique, combined with synthetic aperture radiation pattern estimation provides an approach to process this kind of data to achieve higher apparent resolution. Based on the criterion of minimizing the expected quadratic estimation error, an optimum FIR filter with a symmetrical structure is designed whose coefficients depend on the azimuth response of local isolated prominent points because this response can be approximately regarded as the synthetic aperture radiation pattern of the imaging system. The point target simulation shows that the angular resolution is improved by a ratio of almost two to one. The processing results of a live SAR image demonstrate the validity of the method.

  11. Electron beam based transversal profile measurements of intense ion beams; Elektronenstrahl-Diagnostik zur Bestimmung vom transversalen Profil intensiver Ionenstrahlen

    Energy Technology Data Exchange (ETDEWEB)

    El Moussati, Said

    2014-11-03

    A non-invasive diagnostic method for the experimental determination of the transverse profile of an intense ion beam has been developed and investigated theoretically as well as experimentally within the framework of the present work. The method is based on the deflection of electrons when passing the electromagnetic field of an ion beam. To achieve this an electron beam is employed with a specifically prepared transversal profile. This distinguish this method from similar ones which use thin electron beams for scanning the electromagnetic field [Roy et al. 2005; Blockland10]. The diagnostic method presented in this work will be subsequently called ''Electron-Beam-Imaging'' (EBI). First of all the influence of the electromagnetic field of the ion beam on the electrons has been theoretically analyzed. It was found that the magnetic field causes only a shift of the electrons along the ion beam axis, while the electric field only causes a shift in a plane transverse to the ion beam. Moreover, in the non-relativistic case the magnetic force is significantly smaller than the Coulomb one and the electrons suffer due to the magnetic field just a shift and continue to move parallel to their initial trajectory. Under the influence of the electric field, the electrons move away from the ion beam axis, their resulting trajectory shows a specific angle compared to the original direction. This deflection angle practically depends just on the electric field of the ion beam. Thus the magnetic field has been neglected when analysing the experimental data. The theoretical model provides a relationship between the deflection angle of the electrons and the charge distribution in the cross section of the ion beam. The model however only can be applied for small deflection angles. This implies a relationship between the line-charge density of the ion beam and the initial kinetic energy of the electrons. Numerical investigations have been carried out to clarify the

  12. Semiautomated improvement of RNA alignments

    DEFF Research Database (Denmark)

    Andersen, Ebbe Sloth; Lind-Thomsen, Allan; Knudsen, Bjarne

    2007-01-01

    We have developed a semiautomated RNA sequence editor (SARSE) that integrates tools for analyzing RNA alignments. The editor highlights different properties of the alignment by color, and its integrated analysis tools prevent the introduction of errors when doing alignment editing. SARSE readily...... connects to external tools to provide a flexible semiautomatic editing environment. A new method, Pcluster, is introduced for dividing the sequences of an RNA alignment into subgroups with secondary structure differences. Pcluster was used to evaluate 574 seed alignments obtained from the Rfam database...... and we identified 71 alignments with significant prediction of inconsistent base pairs and 102 alignments with significant prediction of novel base pairs. Four RNA families were used to illustrate how SARSE can be used to manually or automatically correct the inconsistent base pairs detected by Pcluster...

  13. High-performance Supercapacitors Based on Electrochemical-induced Vertical-aligned Carbon Nanotubes and Polyaniline Nanocomposite Electrodes

    Science.gov (United States)

    Wu, Guan; Tan, Pengfeng; Wang, Dongxing; Li, Zhe; Peng, Lu; Hu, Ying; Wang, Caifeng; Zhu, Wei; Chen, Su; Chen, Wei

    2017-01-01

    Supercapacitors, which store electrical energy through reversible ion on the surface of conductive electrodes have gained enormous attention for variously portable energy storage devices. Since the capacitive performance is mainly determined by the structural and electrochemical properties of electrodes, the electrodes become more crucial to higher performance. However, due to the disordered microstructure and low electrochemical activity of electrode for ion tortuous migration and accumulation, the supercapacitors present relatively low capacitance and energy density. Here we report a high-performance supercapacitor based on polyaniline/vertical-aligned carbon nanotubes (PANI/VA-CNTs) nanocomposite electrodes where the vertical-aligned-structure is formed by the electrochemical-induction (0.75 V). The supercapacitor displays large specific capacitance of 403.3 F g−1, which is 6 times higher than disordered CNTs in HClO4 electrolyte. Additionally, the supercapacitor can also present high specific capacitance (314.6 F g−1), excellent cycling stability (90.2% retention after 3000 cycles at 4 A g−1) and high energy density (98.1 Wh kg−1) in EMIBF4 organic electrolyte. The key to high-performance lies in the vertical-aligned-structure providing direct path channel for ion faster diffusion and high electrochemical capacitance of polyaniline for ion more accommodation. PMID:28272474

  14. Reliable Alignment in Total Knee Arthroplasty by the Use of an iPod-Based Navigation System

    Directory of Open Access Journals (Sweden)

    Paola Koenen

    2016-01-01

    Full Text Available Axial alignment is one of the main objectives in total knee arthroplasty (TKA. Computer-assisted surgery (CAS is more accurate regarding limb alignment reconstruction compared to the conventional technique. The aim of this study was to analyse the precision of the innovative navigation system DASH® by Brainlab and to evaluate the reliability of intraoperatively acquired data. A retrospective analysis of 40 patients was performed, who underwent CAS TKA using the iPod-based navigation system DASH. Pre- and postoperative axial alignment were measured on standardized radiographs by two independent observers. These data were compared with the navigation data. Furthermore, interobserver reliability was measured. The duration of surgery was monitored. The mean difference between the preoperative mechanical axis by X-ray and the first intraoperatively measured limb axis by the navigation system was 2.4°. The postoperative X-rays showed a mean difference of 1.3° compared to the final navigation measurement. According to radiographic measurements, 88% of arthroplasties had a postoperative limb axis within ±3°. The mean additional time needed for navigation was 5 minutes. We could prove very good precision for the DASH system, which is comparable to established navigation devices with only negligible expenditure of time compared to conventional TKA.

  15. Reliable Alignment in Total Knee Arthroplasty by the Use of an iPod-Based Navigation System.

    Science.gov (United States)

    Koenen, Paola; Schneider, Marco M; Fröhlich, Matthias; Driessen, Arne; Bouillon, Bertil; Bäthis, Holger

    2016-01-01

    Axial alignment is one of the main objectives in total knee arthroplasty (TKA). Computer-assisted surgery (CAS) is more accurate regarding limb alignment reconstruction compared to the conventional technique. The aim of this study was to analyse the precision of the innovative navigation system DASH® by Brainlab and to evaluate the reliability of intraoperatively acquired data. A retrospective analysis of 40 patients was performed, who underwent CAS TKA using the iPod-based navigation system DASH. Pre- and postoperative axial alignment were measured on standardized radiographs by two independent observers. These data were compared with the navigation data. Furthermore, interobserver reliability was measured. The duration of surgery was monitored. The mean difference between the preoperative mechanical axis by X-ray and the first intraoperatively measured limb axis by the navigation system was 2.4°. The postoperative X-rays showed a mean difference of 1.3° compared to the final navigation measurement. According to radiographic measurements, 88% of arthroplasties had a postoperative limb axis within ±3°. The mean additional time needed for navigation was 5 minutes. We could prove very good precision for the DASH system, which is comparable to established navigation devices with only negligible expenditure of time compared to conventional TKA.

  16. Alignment-free cancelable fingerprint templates based on local minutiae information.

    Science.gov (United States)

    Lee, Chulhan; Choi, Jeung-Yoon; Toh, Kar-Ann; Lee, Sangyoun; Kim, Jaihie

    2007-08-01

    To replace compromised biometric templates, cancelable biometrics has recently been introduced. The concept is to transform a biometric signal or feature into a new one for enrollment and matching. For making cancelable fingerprint templates, previous approaches used either the relative position of a minutia to a core point or the absolute position of a minutia in a given fingerprint image. Thus, a query fingerprint is required to be accurately aligned to the enrolled fingerprint in order to obtain identically transformed minutiae. In this paper, we propose a new method for making cancelable fingerprint templates that do not require alignment. For each minutia, a rotation and translation invariant value is computed from the orientation information of neighboring local regions around the minutia. The invariant value is used as the input to two changing functions that output two values for the translational and rotational movements of the original minutia, respectively, in the cancelable template. When a template is compromised, it is replaced by a new one generated by different changing functions. Our approach preserves the original geometric relationships (translation and rotation) between the enrolled and query templates after they are transformed. Therefore, the transformed templates can be used to verify a person without requiring alignment of the input fingerprint images. In our experiments, we evaluated the proposed method in terms of two criteria: performance and changeability. When evaluating the performance, we examined how verification accuracy varied as the transformed templates were used for matching. When evaluating the changeability, we measured the dissimilarities between the original and transformed templates, and between two differently transformed templates, which were obtained from the same original fingerprint. The experimental results show that the two criteria mutually affect each other and can be controlled by varying the control parameters of

  17. Accelerator development for a radioactive beam facility based on ATLAS.

    Energy Technology Data Exchange (ETDEWEB)

    Shepard, K. W.

    1998-01-08

    The existing superconducting linac ATLAS is in many respects an ideal secondary beam accelerator for an ISOL (Isotope separator on-line) type radioactive beam facility. Such a facility would require the addition of two major accelerator elements: a low charge state injector for the existing heavy ion linac, and a primary beam accelerator providing 220 MV of acceleration for protons and light ions. Development work for both of these elements, including the option of superconducting cavities for the primary beam accelerator is discussed.

  18. Microstructure-dependent piezoelectric beam based on modified strain gradient theory

    Science.gov (United States)

    Li, Y. S.; Feng, W. J.

    2014-09-01

    A microstructure-dependent piezoelectric beam model was developed using a variational formulation, which is based on the modified strain gradient theory and the Timoshenko beam theory. The new model contains three material length scale parameters and can capture the size effect, unlike the classical beam theory. To illustrate the new piezoelectric beam model, the static bending and the free vibration problems of a simply supported beam are numerically solved. These results may be useful in the analysis and design of smart structures that are constructed from piezoelectric materials.

  19. Diffraction-free beams in fractional Schr\\"odinger equation

    CERN Document Server

    Zhang, Yiqi; Belić, Milivoj R; Ahmed, Noor; Zhang, Yanpeng; Xiao, Min

    2015-01-01

    We consider the propagation of one-dimensional and two-dimensional (1D, 2D) Gaussian beams in FSE without a potential, analytically and numerically. Without chirp, a 1D Gaussian beam splits into two nondiffracting Gaussian beams during propagation, while a 2D Gaussian beam undergoes conical diffraction. When a Gaussian beam carries linear chirp, the 1D beam deflects along the trajectories $z=\\pm2(x-x_0)$, which are independent of the chirp. In the case of 2D Gaussian beam, the propagation is also deflected, but the trajectories align along the diffraction cone $z=2r$ and the direction is determined by the chirp. Both 1D and 2D Gaussian beams are diffractionless and display uniform propagation. The nondiffracting property discovered in this model applies to other beams as well. Based on this nondiffracting and splitting property, we introduce the Talbot effect of diffractionless beams in FSE.

  20. Predicting three-dimensional patellofemoral kinematics from static imaging-based alignment measures.

    Science.gov (United States)

    Freedman, Benjamin R; Sheehan, Frances T

    2013-03-01

    Patellofemoral pain syndrome causes significant discomfort and disability among much of the general population. Despite recent breakthroughs in dynamic three-dimensional imaging technologies to assess pathological patellofemoral motion, such tools remain costly for clinical diagnostics applications. Thus, this study investigated whether three-dimensional patellofemoral kinematics could be predicted from routine two-dimensional static measures of patellofemoral joint alignment quantified from magnetic resonance imaging (MRI) data acquired in full knee extension. Twenty-six volunteers clinically diagnosed with patellofemoral pain (19 F/7 M, 25.9 ± 11.1 years) and 26 control subjects (19 F/7 M, 25.3 ± 7.7 years) were included in this IRB-approved study. Static three-dimensional sagittal T1-weighted gradient recall echo and dynamic MRI scans were acquired. For the dynamic image acquisition, subjects cyclically flexed and extended their knee (at 30 cycles/min) while a full cine-phase contrast MRI set (24 time frames of anatomic images and x-, y-, and z-velocity images) was acquired. From these data, static measures of patellofemoral alignment and three-dimensional patellofemoral kinematics were derived. Single and multiple regressions between static and kinematic variables were evaluated. Although shown reliable, the static MRI measures could only partially predict patellofemoral kinematics, with r(2) -values ranging from 16% to 77%. This makes it imperitave that the current precise, accurate, 3D, dynamic imaging techniques be translated into clinical tools.

  1. Beyond Alignment

    DEFF Research Database (Denmark)

    Beyond Alignment: Applying Systems Thinking to Architecting Enterprises is a comprehensive reader about how enterprises can apply systems thinking in their enterprise architecture practice, for business transformation and for strategic execution. The book's contributors find that systems thinking...... is a valuable way of thinking about the viable enterprise and how to architect it....

  2. A laser-based beam profile monitor for the SLC/SLD interaction region

    Science.gov (United States)

    Ross, M. C.; Alley, R.; Arnett, D.; Bong, E.; Colocho, W.; Frisch, J.; Horton-Smith, S.; Inman, W.; Jobe, K.; Kotseroglou, T.; McCormick, D.; Nelson, J.; Scheeff, M.; Wagner, S.

    1997-01-01

    Beam size estimates made using beam-beam deflections are used for optimization of the Stanford Linear Collider (SLC) electron-positron beam sizes. Typical beam sizes and intensities expected for 1996 operations are 2.1×0.6 μm (x,y) at 4.0×1010 particles per pulse. Conventional profile monitors, such as scanning wires, fail at charge densities well below this. Since the beam-beam deflection does not provide single beam size information, another method is needed for interaction point (IP) beam size optimization. The laser-based profile monitor uses a finely focused, 350-nm, wavelength-tripled yttrium-lithium-flouride (YLF) laser pulse that traverses the particle beam path about 29 cm away from the e+/e- IP. Compton scattered photons and degraded e+/e- are detected as the beam is steered across the laser pulse. The laser pulse has a transverse size of 380 nm and a Rayleigh range of about 5 μm. This is adequate for present or planned SLC beams. Design and preliminary results will be presented.

  3. Prestress Force Identification for Externally Prestressed Concrete Beam Based on Frequency Equation and Measured Frequencies

    Directory of Open Access Journals (Sweden)

    Luning Shi

    2014-01-01

    Full Text Available A prestress force identification method for externally prestressed concrete uniform beam based on the frequency equation and the measured frequencies is developed. For the purpose of the prestress force identification accuracy, we first look for the appropriate method to solve the free vibration equation of externally prestressed concrete beam and then combine the measured frequencies with frequency equation to identify the prestress force. To obtain the exact solution of the free vibration equation of multispan externally prestressed concrete beam, an analytical model of externally prestressed concrete beam is set up based on the Bernoulli-Euler beam theory and the function relation between prestress variation and vibration displacement is built. The multispan externally prestressed concrete beam is taken as the multiple single-span beams which must meet the bending moment and rotation angle boundary conditions, the free vibration equation is solved using sublevel simultaneous method and the semi-analytical solution of the free vibration equation which considered the influence of prestress on section rigidity and beam length is obtained. Taking simply supported concrete beam and two-span concrete beam with external tendons as examples, frequency function curves are obtained with the measured frequencies into it and the prestress force can be identified using the abscissa of the crosspoint of frequency functions. Identification value of the prestress force is in good agreement with the test results. The method can accurately identify prestress force of externally prestressed concrete beam and trace the trend of effective prestress force.

  4. Electronic level alignment at the deeply buried absorber/Mo interface in chalcopyrite-based thin film solar cells

    Science.gov (United States)

    Bär, M.; Nishiwaki, S.; Weinhardt, L.; Pookpanratana, S.; Shafarman, W. N.; Heske, C.

    2008-07-01

    We have investigated the electronic structure of the absorber/back contact interface for S-free [Cu(In ,Ga)Se2 ("CIGSe")] and S-containing [Cu(In ,Ga)(S,Se)2 ("CIGSSe")] chalcopyrites with direct and inverse photoemission. Comparison of the electronic levels of the cleavage planes reveals a pronounced cliff in the conduction band at the CIG(S )Se/Mo interface. For the valence band, we find a flat alignment and a small spike for the CIGSe- and CIGSSe-based structures, respectively.

  5. Two-color beam generation based on wakefield excitation

    Science.gov (United States)

    Bettoni, S.; Prat, E.; Reiche, S.

    2016-05-01

    Several beam manipulation methods have been studied and experimentally tested to generate two-color photon beams in free electron laser facilities to accommodate the user requests. We propose to use the interaction of the beam with an oscillating longitudinal wakefield source to obtain a suitable electron beam structure. The bunch generates two subpulses with different energies and delayed in time passing through a magnetic chicane after its longitudinal phase space has been modulated by the wakefield source. According to this approach the power of the emitted radiation is not degraded compared to the monochromatic beam, and the setup in the machine is quite simple because the bunch is manipulated only in the high energy section, where it is more rigid. We present the design applied to SwissFEL. We identified the parameters and the corresponding range of tunability of the time and energy separation among the two subbunches.

  6. Aligning molecules with intense nonresonant laser fields

    DEFF Research Database (Denmark)

    Larsen, J.J.; Safvan, C.P.; Sakai, H.;

    1999-01-01

    Molecules in a seeded supersonic beam are aligned by the interaction between an intense nonresonant linearly polarized laser field and the molecular polarizability. We demonstrate the general applicability of the scheme by aligning I2, ICl, CS2, CH3I, and C6H5I molecules. The alignment is probed...... by mass selective two dimensional imaging of the photofragment ions produced by femtosecond laser pulses. Calculations on the degree of alignment of I2 are in good agreement with the experiments. We discuss some future applications of laser aligned molecules....

  7. CMS Muon Alignment: System Description and first results

    CERN Document Server

    Sobron, M

    2008-01-01

    The CMS detector has been instrumented with a precise and complex opto-mechanical alignment subsystem that provides a common reference frame between Tracker and Muon detection systems by means of a net of laser beams. The system allows a continuous and accurate monitoring of the muon chambers positions with respect to the Tracker body. Preliminary results of operation during the test of the CMS 4T solenoid magnet, performed in 2006, are presented. These measurements complement the information provided by the use of survey techniques and the results of alignment algorithms based on muon tracks crossing the detector.

  8. AXAF Alignment Test System Autocollimating Flat Error Correction

    Science.gov (United States)

    Lewis, Timothy S.

    1995-01-01

    The alignment test system for the advanced x ray astrophysics facility (AXAF) high-resolution mirror assembly (HRMA) determines the misalignment of the HRMA by measuring the displacement of a beam of light reflected by the HRMA mirrors and an autocollimating flat (ACF). This report shows how to calibrate the system to compensate for errors introduced by the ACF, using measurements taken with the ACF in different positions. It also shows what information can be obtained from alignment test data regarding errors in the shapes of the HRMA mirrors. Simulated results based on measured ACF surface data are presented.

  9. CdTe microwire-based ultraviolet photodetectors aligned by a non-uniform electric field

    Science.gov (United States)

    Park, Hyunik; Yang, Gwangseok; Chun, Seungju; Kim, Donghwan; Kim, Jihyun

    2013-07-01

    We report on ultraviolet (UV) photodetectors fabricated by positioning Cadmium Telluride (CdTe) microwires (μWs) precisely by dielectrophoretic (DEP) force, where CdTe μWs were grown using an Au-catalyst-assisted closed-space-sublimation (CSS) method. The optical properties of CSS-grown CdTe μWs were characterized by micro-photoluminescence and micro-Raman spectroscopies. Optoelectronic characteristics were obtained after CdTe μWs were aligned on a pre-patterned SiO2/Si substrate by a non-uniform electric field. Photocurrents were increased with increasing the light intensities. Fast and reliable photoresponse and recovery were observed when CdTe μWs were exposed to UV illuminations. We demonstrated that high quality CdTe μWs grown by the CSS method have significant potentials as optoelectronic devices.

  10. Multi-classification of cell deformation based on object alignment and run length statistic.

    Science.gov (United States)

    Li, Heng; Liu, Zhiwen; An, Xing; Shi, Yonggang

    2014-01-01

    Cellular morphology is widely applied in digital pathology and is essential for improving our understanding of the basic physiological processes of organisms. One of the main issues of application is to develop efficient methods for cell deformation measurement. We propose an innovative indirect approach to analyze dynamic cell morphology in image sequences. The proposed approach considers both the cellular shape change and cytoplasm variation, and takes each frame in the image sequence into account. The cell deformation is measured by the minimum energy function of object alignment, which is invariant to object pose. Then an indirect analysis strategy is employed to overcome the limitation of gradual deformation by run length statistic. We demonstrate the power of the proposed approach with one application: multi-classification of cell deformation. Experimental results show that the proposed method is sensitive to the morphology variation and performs better than standard shape representation methods.

  11. Observers can always generate nonlocal correlations without aligning measurements by covering all their bases

    CERN Document Server

    Wallman, Joel J

    2011-01-01

    Quantum theory allows for correlations between the outcomes of distant measurements that are inconsistent with any locally causal theory, as demonstrated by the violation of a Bell inequality. Typical demonstrations of these correlations require careful alignment between the measurements, which requires distant parties to share a reference frame. Here, we prove, following a numerical observation by Shadbolt et al., that if two parties share a Bell state and each party randomly chooses three orthogonal measurements, then the parties will always violate a Bell inequality. Furthermore, we prove that this probability is highly robust against local depolarizing noise, in that small levels of noise only decrease the probability of violating a Bell inequality by a small amount. We also show that generalizing to N parties increases the robustness against noise. These results improve on previous ones that only allowed a high probability of violating a Bell inequality for large numbers of parties.

  12. Mitochondrial phylogeny of the Chrysisignita (Hymenoptera: Chrysididae) species group based on simultaneous Bayesian alignment and phylogeny reconstruction.

    Science.gov (United States)

    Soon, Villu; Saarma, Urmas

    2011-07-01

    The ignita species group within the genus Chrysis includes over 100 cuckoo wasp species, which all lead a parasitic lifestyle and exhibit very similar morphology. The lack of robust, diagnostic morphological characters has hindered phylogenetic reconstructions and contributed to frequent misidentification and inconsistent interpretations of species in this group. Therefore, molecular phylogenetic analysis is the most suitable approach for resolving the phylogeny and taxonomy of this group. We present a well-resolved phylogeny of the Chrysis ignita species group based on mitochondrial sequence data from 41 ingroup and six outgroup taxa. Although our emphasis was on European taxa, we included samples from most of the distribution range of the C. ignita species group to test for monophyly. We used a continuous mitochondrial DNA sequence consisting of 16S rRNA, tRNA(Val), 12S rRNA and ND4. The location of the ND4 gene at the 3' end of this continuous sequence, following 12S rRNA, represents a novel mitochondrial gene arrangement for insects. Due to difficulties in aligning rRNA genes, two different Bayesian approaches were employed to reconstruct phylogeny: (1) using a reduced data matrix including only those positions that could be aligned with confidence; or (2) using the full sequence dataset while estimating alignment and phylogeny simultaneously. In addition maximum-parsimony and maximum-likelihood analyses were performed to test the robustness of the Bayesian approaches. Although all approaches yielded trees with similar topology, considerably more nodes were resolved with analyses using the full data matrix. Phylogenetic analysis supported the monophyly of the C. ignita species group and divided its species into well-supported clades. The resultant phylogeny was only partly in accordance with published subgroupings based on morphology. Our results suggest that several taxa currently treated as subspecies or names treated as synonyms may in fact constitute

  13. Radiative damping and electron beam dynamics in plasma-based accelerators.

    Science.gov (United States)

    Michel, P; Schroeder, C B; Shadwick, B A; Esarey, E; Leemans, W P

    2006-08-01

    The effects of radiation reaction on electron beam dynamics are studied in the context of plasma-based accelerators. Electrons accelerated in a plasma channel undergo transverse betatron oscillations due to strong focusing forces. These oscillations lead to emission by the electrons of synchrotron radiation, with a corresponding energy loss that affects the beam properties. An analytical model for the single particle orbits and beam moments including the classical radiation reaction force is derived and compared to the results of a particle transport code. Since the betatron amplitude depends on the initial transverse position of the electron, the resulting radiation can increase the relative energy spread of the beam to significant levels (e.g., several percent). This effect can be diminished by matching the beam into the channel, which could require micron sized beam radii for typical values of the beam emittance and plasma density.

  14. Radiative damping and electron beam dynamics in plasma-based accelerators

    Science.gov (United States)

    Michel, P.; Schroeder, C. B.; Shadwick, B. A.; Esarey, E.; Leemans, W. P.

    2006-08-01

    The effects of radiation reaction on electron beam dynamics are studied in the context of plasma-based accelerators. Electrons accelerated in a plasma channel undergo transverse betatron oscillations due to strong focusing forces. These oscillations lead to emission by the electrons of synchrotron radiation, with a corresponding energy loss that affects the beam properties. An analytical model for the single particle orbits and beam moments including the classical radiation reaction force is derived and compared to the results of a particle transport code. Since the betatron amplitude depends on the initial transverse position of the electron, the resulting radiation can increase the relative energy spread of the beam to significant levels (e.g., several percent). This effect can be diminished by matching the beam into the channel, which could require micron sized beam radii for typical values of the beam emittance and plasma density.

  15. Experimental analysis of beam pointing system based on liquid crystal optical phase array

    Science.gov (United States)

    Shi, Yubin; Zhang, Jianmin; Zhang, Zhen

    2016-12-01

    In this paper, we propose and demonstrate an elementary non-mechanical beam aiming and steering system with a single liquid crystal optical phase array (LC-OPA) and charge-coupled device (CCD). With the conventional method of beam steering control, the LC-OPA device can realize one dimensional beam steering continuously. An improved beam steering strategy is applied to realize two dimensional beam steering with a single LC-OPA. The whole beam aiming and steering system, including an LC-OPA and a retroreflective target, is controlled by the monitor. We test the feasibility of beam steering strategy both in one dimension and in two dimension at first, then the whole system is build up based on the improved strategy. The experimental results show that the max experimental pointing error is 56 μrad, and the average pointing error of the system is 19 μrad.

  16. SU-E-J-181: Effect of Prostate Motion On Combined Brachytherapy and External Beam Dose Based On Daily Motion of the Prostate

    Energy Technology Data Exchange (ETDEWEB)

    Narayana, V; McLaughlin, P [Providence Cancer Center, Southfield, MI (United States); University of Michigan, Ann Arbor, MI (United States); Ealbaj, J [University of Michigan, Ann Arbor, MI (United States)

    2015-06-15

    Purpose: In this study, the adequacy of target expansions on the combined external beam and implant dose was examined based on the measured daily motion of the prostate. Methods: Thirty patients received an I–125 prostate implant prescribed to dose of 90Gy. This was followed by external beam to deliver a dose of 90Gyeq (external beam equivalent) to the prostate over 25 to 30 fractions. An ideal IMRT plan was developed by optimizing the external beam dose based on the delivered implant dose. The implant dose was converted to an equivalent external beam dose using the linear quadratic model. Patients were set up on the treatment table by daily orthogonal imaging and aligning the marker seeds in the prostate. Orthogonal images were obtained at the end of treatment to assess prostate intrafraction motion. Based on the observed motion of the markers between the initial and final images, 5 individual plans showing the actual dose delivered to the patient were calculated. A final true dose distribution was established based on summing the implant dose and the 5 external beam plans. Dose to the prostate, seminal vesicles, lymphnodes and normal tissues, rectal wall, urethra and lower sphincter were calculated and compared to ideal. On 18 patients who were sexually active, dose to the corpus cavernosum and internal pudendal artery was also calculated. Results: The average prostate motion in 3 orthogonal directions was less than 1 mm with a standard deviation of less than +2 mm. Dose and volume parameters showed that there was no decrease in dose to the targets and a marginal decrease in dose to in normal tissues. Conclusion: Dose delivered by seed implant moves with the prostate, decreasing the impact of intrafractions dose movement on actual dose delivered. Combined brachytherapy and external beam dose delivered to the prostate was not sensitive to prostate motion.

  17. Electron beam based transversal profile measurements of intense ion beams; Elektronenstrahl-Diagnostik zur Bestimmung vom transversalen Profil intensiver Ionenstrahlen

    Energy Technology Data Exchange (ETDEWEB)

    El Moussati, Said

    2014-11-03

    A non-invasive diagnostic method for the experimental determination of the transverse profile of an intense ion beam has been developed and investigated theoretically as well as experimentally within the framework of the present work. The method is based on the deflection of electrons when passing the electromagnetic field of an ion beam. To achieve this an electron beam is employed with a specifically prepared transversal profile. This distinguish this method from similar ones which use thin electron beams for scanning the electromagnetic field [Roy et al. 2005; Blockland10]. The diagnostic method presented in this work will be subsequently called ''Electron-Beam-Imaging'' (EBI). First of all the influence of the electromagnetic field of the ion beam on the electrons has been theoretically analyzed. It was found that the magnetic field causes only a shift of the electrons along the ion beam axis, while the electric field only causes a shift in a plane transverse to the ion beam. Moreover, in the non-relativistic case the magnetic force is significantly smaller than the Coulomb one and the electrons suffer due to the magnetic field just a shift and continue to move parallel to their initial trajectory. Under the influence of the electric field, the electrons move away from the ion beam axis, their resulting trajectory shows a specific angle compared to the original direction. This deflection angle practically depends just on the electric field of the ion beam. Thus the magnetic field has been neglected when analysing the experimental data. The theoretical model provides a relationship between the deflection angle of the electrons and the charge distribution in the cross section of the ion beam. The model however only can be applied for small deflection angles. This implies a relationship between the line-charge density of the ion beam and the initial kinetic energy of the electrons. Numerical investigations have been carried out to clarify the

  18. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2012-01-01

      A new muon alignment has been produced for 2012 A+B data reconstruction. It uses the latest Tracker alignment and single-muon data samples to align both DTs and CSCs. Physics validation has been performed and shows a modest improvement in stand-alone muon momentum resolution in the barrel, where the alignment is essentially unchanged from the previous version. The reference-target track-based algorithm using only collision muons is employed for the first time to align the CSCs, and a substantial improvement in resolution is observed in the endcap and overlap regions for stand-alone muons. This new alignment is undergoing the approval process and is expected to be deployed as part of a new global tag in the beginning of December. The pT dependence of the φ-bias in curvature observed in Monte Carlo was traced to a relative vertical misalignment between the Tracker and barrel muon systems. Moving the barrel as a whole to match the Tracker cures this pT dependence, leaving only the &phi...

  19. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    S. Szillasi

    2013-01-01

    The CMS detector has been gradually opened and whenever a wheel became exposed the first operation was the removal of the MABs, the sensor structures of the Hardware Barrel Alignment System. By the last days of June all 36 MABs have arrived at the Alignment Lab at the ISR where, as part of the Alignment Upgrade Project, they are refurbished with new Survey target holders. Their electronic checkout is on the way and finally they will be recalibrated. During LS1 the alignment system will be upgraded in order to allow more precise reconstruction of the MB4 chambers in Sector 10 and Sector 4. This requires new sensor components, so called MiniMABs (pictured below), that have already been assembled and calibrated. Image 6: Calibrated MiniMABs are ready for installation For the track-based alignment, the systematic uncertainties of the algorithm are under scrutiny: this study will enable the production of an improved Monte Carlo misalignment scenario and to update alignment position errors eventually, crucial...

  20. A Novel Image Alignment Algorithm Based on Rotation-Discriminating Ring-Shifted Projection for Automatic Optical Inspection

    Directory of Open Access Journals (Sweden)

    Chin-Sheng Chen

    2016-05-01

    Full Text Available This paper proposes a novel image alignment algorithm based on rotation-discriminating ring-shifted projection for automatic optical inspection. This new algorithm not only identifies the location of the template image within an inspection image but also provides precise rotation information during the template-matching process by using a novel rotation estimation scheme, the so-called ring-shifted technique. We use a two stage framework with an image pyramid searching technique for realizing the proposed image alignment algorithm; in the first stage, the similarity based on hybrid projection transformation with the image pyramid searching technique is employed for quick selection and location of the candidates in the inspection image. In the second stage, the rotation angle of the object is estimated by a novel ring-shifted technique. The estimation is performed only for the most likely candidate which is the one having the highest similarity in the first stage. The experimental results show that the proposed method provides accurate estimation for template matching with arbitrary rotations and is applicable in various environmental conditions.

  1. General Alignment Concept of the CMS experiment

    CERN Document Server

    Lampen, T

    2006-01-01

    Efficient and accurate track reconstruction requires proper alignment of the tracking devices used. Here we describe the general alignment strategy envisaged for the CMS experiment. The hardware alignment devices of CMS are presented as well as the different track based alignment approaches.

  2. A fast beam hardening correction method incorporated in a filtered back-projection based MAP algorithm

    Science.gov (United States)

    Luo, Shouhua; Wu, Huazhen; Sun, Yi; Li, Jing; Li, Guang; Gu, Ning

    2017-03-01

    The beam hardening effect can induce strong artifacts in CT images, which result in severely deteriorated image quality with incorrect intensities (CT numbers). This paper develops an effective and efficient beam hardening correction algorithm incorporated in a filtered back-projection based maximum a posteriori (BHC-FMAP). In the proposed algorithm, the beam hardening effect is modeled and incorporated into the forward-projection of the MAP to suppress beam hardening induced artifacts, and the image update process is performed by Feldkamp–Davis–Kress method based back-projection to speed up the convergence. The proposed BHC-FMAP approach does not require information about the beam spectrum or the material properties, or any additional segmentation operation. The proposed method was qualitatively and quantitatively evaluated using both phantom and animal projection data. The experimental results demonstrate that the BHC-FMAP method can efficiently provide a good correction of beam hardening induced artefacts.

  3. Rotational alignment in total knee arthroplasty: nonimage-based navigation system versus conventional technique

    Institute of Scientific and Technical Information of China (English)

    ZHANG Xian-long; ZHANG Wen; SHAO Jun-jie

    2012-01-01

    Background Proper rotational alignment during total knee arthroplasty (TKA) is important for adequate postoperative patellofemoral and tibiofemoral kinematics,as well as for achieving balanced flexion space at 90°.The effects of computer navigation-assisted total knee replacement and conventional total knee arthroplasty on rotational alignment,mechanical axis,component position and clinical outcomes were compared.Methods Two methods were used in 82 patients and the rotation of the femoral and tibial components in the transverse plane,the combined rotation of the two components,the mismatch between them,and the mechanical axis of the lower limb were analyzed.All of these parameters were measured from postoperative radiographs and computed tomography images.Functional outcomes were compared at 6 weeks and 6 months postoperatively.Results Significant differences were found between the two techniques (P <0.05) in the following parameters:average rotation of the femoral component ((1.51±3.55)° vs.(-0.63±3.04)°); combined rotation of the femoral and tibial components (2.85±4.07)° vs.(0.28±3.43)°); and mismatch between the femoral and tibial components ((1.44±4.55)° vs.(-0.43±2.86)°).Differences in the rotation of the tibial component were not statistically significant.The prevalence of outliers (malalignment >±3° intemal/external rotation) of the femoral component (31.7% vs.12.5%) and the tibial component (36.6% vs.15%) were significantly reduced when the navigation system was used (P<0.05).In addition,while patients in the navigation group had significantly better mechanical axis and functional outcomes at 6 weeks after surgery (P <0.05),there was no significant difference between the two groups (P >0.05) with respect to functional outcomes at 6 months.Conclusion The navigation system exhibited higher accuracy than the conventional technique in the transverse and coronal plane,and provided better early functional outcomes.

  4. Synchrotron radiation based beam diagnostics at the Fermilab Tevatron

    CERN Document Server

    Thurman-Keup, R; Hahn, A; Hurh, P; Lorman, E; Lundberg, C; Meyer, T; Miller, D; Pordes, S; Valishev, A

    2011-01-01

    Synchrotron radiation has been used for many years as a beam diagnostic at electron accelerators. It is not normally associated with proton accelerators as the intensity of the radiation is too weak to make detection practical. However, if one utilizes the radiation originating near the edge of a bending magnet, or from a short magnet, the rapidly changing magnetic field serves to enhance the wavelengths shorter than the cutoff wavelength, which for more recent high energy proton accelerators such as Fermilab's Tevatron, tends to be visible light. This paper discusses the implementation at the Tevatron of two devices. A transverse beam profile monitor images the synchrotron radiation coming from the proton and antiproton beams separately and provides profile data for each bunch. A second monitor measures the low-level intensity of beam in the abort gaps which poses a danger to both the accelerator's superconducting magnets and the silicon detectors of the high energy physics experiments. Comparisons of measur...

  5. Commissioning and Initial Performance of the LHC Beam-Based Feedback Systems

    CERN Document Server

    Boccardi, A; Calvo Giraldo, E; Denz, R; Gasior, M; Gonzalez, JL; Jackson, S; Jensen, LK; Jones, OR; King, Q; Kruk, G; Lamont, M; Page, S; Steinhagen, RJ; Wenninger, J

    2010-01-01

    The LHC deploys a comprehensive suite of beam-based feedbacks for safe and reliable machine operation. This contribution summarises the commissioning and early results of the LHC feedback control systems on orbit, tune, chromaticity, and energy. Their performance – strongly linked to the associated beam instrumentation, external beam perturbation sources and optics uncertainties – is evaluated and compared with the initial feedback design assumptions

  6. Koehler-illumination-based method to improve beam size controllability

    Science.gov (United States)

    Hattori, Kiyoshi; Sunaoshi, Hitoshi; Ando, Atsushi

    1998-06-01

    We have developed a new EB calibration method for adjusting both Koehler illumination condition and beam current density precisely in the EB direct writing system EX-8D. Koehler illumination condition is adjusted by controlling the condenser lens so that the beam size change on the target vs. focus change of the objective is minimized. Beam current density is adjusted to the desired value by controlling the two condenser lenses which acts as a zoom lens function and maintaining above Koehler illumination condition. Using this method, beam size deviation was improved to less than 2 nm for a focus change of 10 micrometers , and beam current density was controlled to less than 0.5 percent error from the desired value. This beam calibration was executed in less than 10 minutes. We have also evaluated the pattern roughness and the pattern size deviation depending on the focus change by delineating a 0.125 micrometers line and space pattern. The pattern roughness was controlled to less than 2 nm and the pattern size deviation was less than 2 nm for a focus change of +/- micrometers .

  7. Versatile Particle-Based Route to Engineer Vertically Aligned Silicon Nanowire Arrays and Nanoscale Pores.

    Science.gov (United States)

    Elnathan, Roey; Isa, Lucio; Brodoceanu, Daniel; Nelson, Adrienne; Harding, Frances J; Delalat, Bahman; Kraus, Tobias; Voelcker, Nicolas H

    2015-10-28

    Control over particle self-assembly is a prerequisite for the colloidal templating of lithographical etching masks to define nanostructures. This work integrates and combines for the first time bottom-up and top-down approaches, namely, particle self-assembly at liquid-liquid interfaces and metal-assisted chemical etching, to generate vertically aligned silicon nanowire (VA-SiNW) arrays and, alternatively, arrays of nanoscale pores in a silicon wafer. Of particular importance, and in contrast to current techniques, including conventional colloidal lithography, this approach provides excellent control over the nanowire or pore etching site locations and decouples nanowire or pore diameter and spacing. The spacing between pores or nanowires is tuned by adjusting the specific area of the particles at the liquid-liquid interface before deposition. Hence, the process enables fast and low-cost fabrication of ordered nanostructures in silicon and can be easily scaled up. We demonstrate that the fabricated VA-SiNW arrays can be used as in vitro transfection platforms for transfecting human primary cells.

  8. High performance piezoelectric devices based on aligned arrays of nanofibers of poly(vinylidenefluoride-co-trifluoroethylene)

    Science.gov (United States)

    Persano, Luana; Dagdeviren, Canan; Su, Yewang; Zhang, Yihui; Girardo, Salvatore; Pisignano, Dario; Huang, Yonggang; Rogers, John A.

    2013-03-01

    Multifunctional capability, flexible design, rugged lightweight construction and self-powered operation are desired attributes for electronics that directly interface with the human body or with advanced robotic systems. For these applications, piezoelectric materials, in forms that offer the ability to bend and stretch, are attractive for pressure/force sensors and mechanical energy harvesters. Here, we introduce a large area, flexible piezoelectric material that consists of sheets of electrospun fibres of the polymer poly[(vinylidenefluoride-co-trifluoroethylene]. The flow and mechanical conditions associated with the spinning process yield free-standing, three-dimensional architectures of aligned arrangements of such fibres, in which the polymer chains adopt strongly preferential orientations. The resulting material offers exceptional piezoelectric characteristics, to enable ultra-high sensitivity for measuring pressure, even at exceptionally small values (0.1 Pa). Quantitative analysis provides detailed insights into the pressure sensing mechanisms, and establishes engineering design rules. Potential applications range from self-powered micro-mechanical elements, to self-balancing robots and sensitive impact detectors.

  9. Prediction of antimicrobial peptides based on sequence alignment and feature selection methods.

    Directory of Open Access Journals (Sweden)

    Ping Wang

    Full Text Available Antimicrobial peptides (AMPs represent a class of natural peptides that form a part of the innate immune system, and this kind of 'nature's antibiotics' is quite promising for solving the problem of increasing antibiotic resistance. In view of this, it is highly desired to develop an effective computational method for accurately predicting novel AMPs because it can provide us with more candidates and useful insights for drug design. In this study, a new method for predicting AMPs was implemented by integrating the sequence alignment method and the feature selection method. It was observed that, the overall jackknife success rate by the new predictor on a newly constructed benchmark dataset was over 80.23%, and the Mathews correlation coefficient is 0.73, indicating a good prediction. Moreover, it is indicated by an in-depth feature analysis that the results are quite consistent with the previously known knowledge that some amino acids are preferential in AMPs and that these amino acids do play an important role for the antimicrobial activity. For the convenience of most experimental scientists who want to use the prediction method without the interest to follow the mathematical details, a user-friendly web-server is provided at http://amp.biosino.org/.

  10. High performance piezoelectric devices based on aligned arrays of nanofibers of poly(vinylidenefluoride-co-trifluoroethylene).

    Science.gov (United States)

    Persano, Luana; Dagdeviren, Canan; Su, Yewang; Zhang, Yihui; Girardo, Salvatore; Pisignano, Dario; Huang, Yonggang; Rogers, John A

    2013-01-01

    Multifunctional capability, flexible design, rugged lightweight construction and self-powered operation are desired attributes for electronics that directly interface with the human body or with advanced robotic systems. For these applications, piezoelectric materials, in forms that offer the ability to bend and stretch, are attractive for pressure/force sensors and mechanical energy harvesters. Here, we introduce a large area, flexible piezoelectric material that consists of sheets of electrospun fibres of the polymer poly[(vinylidenefluoride-co-trifluoroethylene]. The flow and mechanical conditions associated with the spinning process yield free-standing, three-dimensional architectures of aligned arrangements of such fibres, in which the polymer chains adopt strongly preferential orientations. The resulting material offers exceptional piezoelectric characteristics, to enable ultra-high sensitivity for measuring pressure, even at exceptionally small values (0.1 Pa). Quantitative analysis provides detailed insights into the pressure sensing mechanisms, and establishes engineering design rules. Potential applications range from self-powered micro-mechanical elements, to self-balancing robots and sensitive impact detectors.

  11. Mathis software for controlling BCAM-based monitoring and alignment systems

    CERN Document Server

    Klumb, Francis; Kautzmann, Guillaume; CERN. Geneva. ATS Department

    2016-01-01

    The MATHIS Software (Monitoring and Alignment Tracking for HIE-Isolde Software) aims at providing 3D positions of physical components of the HIE-Isolde superconducting modules, accurately and permanently measured by well-designed networks of BCAM devices (Brandeis Camera Angle Monitoring). Although it is originally intended for the HIE-Isolde project, its architecture and its use cases have been extended and optimized for more general setups. Most of the configuration data are stored either within XML-formatted files or within databases. The adaptation of MATHIS for different BCAM monitoring systems therefore does not require any further code rewriting. Moreover, the software is fully cross-platform and can either be run on the specific Linux machines driving the accelerator electronic devices, or be used on independent Windows workstations as a stand-alone software. In the first case, the software mainly relies on FESA (Front End Software Architecture) which is an object-oriented real-time framework that ens...

  12. Software-based data path for raster-scanned multi-beam mask lithography

    Science.gov (United States)

    Rajagopalan, Archana; Agarwal, Ankita; Buck, Peter; Geller, Paul; Hamaker, H. Christopher; Rao, Nagswara

    2016-10-01

    According to the 2013 SEMATECH Mask Industry Survey,i roughly half of all photomasks are produced using laser mask pattern generator ("LMPG") lithography. LMPG lithography can be used for all layers at mature technology nodes, and for many non-critical and semi-critical masks at advanced nodes. The extensive use of multi-patterning at the 14-nm node significantly increases the number of critical mask layers, and the transition in wafer lithography from positive tone resist to negative tone resist at the 14-nm design node enables the switch from advanced binary masks back to attenuated phase shifting masks that require second level writes to remove unwanted chrome. LMPG lithography is typically used for second level writes due to its high productivity, absence of charging effects, and versatile non-actinic alignment capability. As multi-patterning use expands from double to triple patterning and beyond, the number of LMPG second level writes increases correspondingly. The desire to reserve the limited capacity of advanced electron beam writers for use when essential is another factor driving the demand for LMPG capacity. The increasing demand for cost-effective productivity has kept most of the laser mask writers ever manufactured running in production, sometimes long past their projected lifespan, and new writers continue to be built based on hardware developed some years ago.ii The data path is a case in point. While state-ofthe- art when first introduced, hardware-based data path systems are difficult to modify or add new features to meet the changing requirements of the market. As data volumes increase, design styles change, and new uses are found for laser writers, it is useful to consider a replacement for this critical subsystem. The availability of low-cost, high-performance, distributed computer systems combined with highly scalable EDA software lends itself well to creating an advanced data path system. EDA software, in routine production today, scales

  13. Fiducialisation and initial alignment of CLIC component with micrometric accuracy

    CERN Document Server

    Mainaud Durand, Helene; Buzio, Marco; Caiazza, Domenico; Catalan Lasheras, Nuria; Cherif, Ahmed; Doytchinov, Iordan Petrov; Fuchs, Jean-Frederic; Gaddi, Andrea; Galindo Munoz, Natalia; Gayde, Jean-Christophe; Kamugasa, Solomon William; Modena, Michele; Novotny, Peter; Sanz, Claude; Severino, Giordana; Russenschuck, Stephan; Tshilumba, David; Vlachakis, Vasileios; Wendt, Manfred; Zorzetti, Silvia; CERN. Geneva. ATS Department

    2016-01-01

    We propose a new solution to fiducialise the three major components of the CLIC collider: quadrupoles, beam-position monitors (BPM), and accelerating structures (AS). This solution is based on the use of a copper-beryllium (CuBe) wire to locate the reference position, i.e. the symmetry axes of the components (their magnetic, respectively electromagnetic centre axis), and to determine their position in the common support assembly defining a local coordinate system, with respect to the fiducials. These alignment targets will be used later to align the support assembly in the tunnel. With such a method, several accelerator components of different types, supported by a dedicated adjustment system, can be simultaneously fiducialised and pre-aligned using the same wire, enabling a micrometric accuracy with help of a 3D coordinate measurement machine (CMM). Alternative solutions based on frequency scanning interferometry (FSI) and micro-triangulation are also under development, to perform such fiducialisation and in...

  14. On the role of ion-based imaging methods in modern ion beam therapy

    Science.gov (United States)

    Magallanes, L.; Brons, S.; Marcelos, T.; Takechi, M.; Voss, B.; Jäkel, O.; Rinaldi, I.; Parodi, K.

    2014-11-01

    External beam radiotherapy techniques have the common aim to maximize the radiation dose to the target while sparing the surrounding healthy tissues. The inverted and finite depth-dose profile of ion beams (Bragg peak) allows for precise dose delivery and conformai dose distribution. Furthermore, increased radiobiological effectiveness of ions enhances the capability to battle radioresistant tumors. Ion beam therapy requires a precise determination of the ion range, which is particularly sensitive to range uncertainties. Therefore, novel imaging techniques are currently investigated as a tool to improve the quality of ion beam treatments. Approaches already clinically available or under development are based on the detection of secondary particles emitted as a result of nuclear reactions (e.g., positron-annihilation or prompt gammas, charged particles) or transmitted high energy primary ion beams. Transmission imaging techniques make use of the beams exiting the patient, which have higher initial energy and lower fluence than the therapeutic ones. At the Heidelberg Ion Beam Therapy Center, actively scanned energetic proton and carbon ion beams provide an ideal environment for the investigation of ion-based radiography and tomography. This contribution presents the rationale of ion beam therapy, focusing on the role of ion-based transmission imaging methods towards the reduction of range uncertainties and potential improvement of treatment planning.

  15. On the role of ion-based imaging methods in modern ion beam therapy

    Energy Technology Data Exchange (ETDEWEB)

    Magallanes, L., E-mail: lorena.magallanes@med.uni-heidelberg.de; Rinaldi, I., E-mail: ilaria.rinaldi@med.uni-heidelberg.de [Heidelberg University Clinic (Dep. Radiation Therapy and Radiation Oncology). Im Neuenheimer Feld 400 69120 Heidelberg, Germany and Ludwig Maximilians University Munich. Am Coulombwall 1, D-85748, Garching (Germany); Brons, S., E-mail: stephan.brons@med.uni-heidelberg.de [Heidelberg Ion Therapy Center. Im Neuenheimer Feld 450 69120 Heidelberg (Germany); Marcelos, T., E-mail: tiago.marcelos@physik.uni-muenchen.de; Parodi, K., E-mail: katia.parodi@physik.uni-muenchen.de [Ludwig Maximilians University Munich. Am Coulombwall 1, D-85748, Garching (Germany); Takechi, M., E-mail: m.takechi@gsi.de [GSI Heimholtz Center for Heavy Ion Research. Planckstraße 1, 64291, Darmstadt (Germany); Voss, B., E-mail: b.voss@gsi.de [GSI Heimholte Center for Heavy Ion Research. Planckstraße 1, 64291, Darmstadt (Germany); Jäkel, O., E-mail: o.jaekel@dkfz-heidelberg.de [Heidelberg University Clinic (Dep. Radiation Therapy and Radiation Oncology). Im Neuenheimer Feld 400 69120 Heidelberg (Germany); Heidelberg Ion Therapy Center. Im Neuenheimer Feld 450 69120 Heidelberg (Germany); German Cancer Research Center, Im N (Germany)

    2014-11-07

    External beam radiotherapy techniques have the common aim to maximize the radiation dose to the target while sparing the surrounding healthy tissues. The inverted and finite depth-dose profile of ion beams (Bragg peak) allows for precise dose delivery and conformai dose distribution. Furthermore, increased radiobiological effectiveness of ions enhances the capability to battle radioresistant tumors. Ion beam therapy requires a precise determination of the ion range, which is particularly sensitive to range uncertainties. Therefore, novel imaging techniques are currently investigated as a tool to improve the quality of ion beam treatments. Approaches already clinically available or under development are based on the detection of secondary particles emitted as a result of nuclear reactions (e.g., positron-annihilation or prompt gammas, charged particles) or transmitted high energy primary ion beams. Transmission imaging techniques make use of the beams exiting the patient, which have higher initial energy and lower fluence than the therapeutic ones. At the Heidelberg Ion Beam Therapy Center, actively scanned energetic proton and carbon ion beams provide an ideal environment for the investigation of ion-based radiography and tomography. This contribution presents the rationale of ion beam therapy, focusing on the role of ion-based transmission imaging methods towards the reduction of range uncertainties and potential improvement of treatment planning.

  16. Pareto optimal pairwise sequence alignment.

    Science.gov (United States)

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  17. Alignment Methods Developed for the Validation of the Thermal and Mechanical Behaviour of the Two Beam Test Modules for the CLIC Project

    CERN Document Server

    Mainaud Durand, Helene; Sosin, Mateusz; Rude, Vivien

    2014-01-01

    CLIC project will consist of more than 20 000 two meters long modules. A test setup made of three modules is being built at CERN to validate the assembly and integration of all components and technical systems and to validate the short range strategy of pre-alignment. The test setup has been installed in a room equipped with a sophisticated system of ventilation able to reproduce the environmental conditions of the CLIC tunnel. Some of the components have been equipped with electrical heaters to simulate the power dissipation, combined with a water cooling system integrated in the RF components. Using these installations, to have a better understanding of the thermal and mechanical behaviour of a module under different operation modes, machine cycles have been simulated; the misalignment of the components and their supports has been observed. This paper describes the measurements methods developed for such a project and the results obtained.

  18. A Rapid Transfer Alignment Method for SINS Based on the Added Backward-Forward SINS Resolution and Data Fusion

    Directory of Open Access Journals (Sweden)

    Xixiang Liu

    2013-01-01

    Full Text Available Two viewpoints are given: (1 initial alignment of strapdown inertial navigation system (SINS can be fulfilled with a set of inertial sensor data; (2 estimation time for sensor errors can be shortened by repeated data fusion on the added backward-forward SINS resolution results and the external reference data. Based on the above viewpoints, aiming to estimate gyro bias in a shortened time, a rapid transfer alignment method, without any changes for Kalman filter, is introduced. In this method, inertial sensor data and reference data in one reference data update cycle are stored, and one backward and one forward SINS resolutions are executed. Meanwhile, data fusion is executed when the corresponding resolution ends. With the added backward-forward SINS resolution, in the above mentioned update cycle, the estimating operations for gyro bias are added twice, and the estimation time for it is shortened. In the ship swinging condition, with the “velocity plus yaw” matching, the effectiveness of this method is proved by the simulation.

  19. Implementing a search for aligned-spin neutron star -- black hole systems with advanced ground based gravitational wave detectors

    CERN Document Server

    Canton, Tito Dal; Lundgren, Andrew P; Nielsen, Alex B; Brown, Duncan A; Harry, Ian W; Krishnan, Badri; Miller, Andrew J; Wiesner, Karsten; Willis, Joshua L

    2014-01-01

    We study the effect of spins on searches for gravitational waves from compact binary coalescence events in realistic early advanced LIGO data. We construct a realistic detection pipeline which includes matched filtering, signal-based vetoes, coincidence tests between different detectors, clustering of events, and an estimate of the rate of background events. We restrict attention to neutron star--black hole (NS-BH) binary systems, and we compare a search using non-spinning templates to a search using templates which include spins aligned with the orbital angular momentum. We introduce a new implementation of the gravitational-wave matched-filter computation in a new software toolkit for gravitational-wave data analysis called PyCBC, and use this to run our search. We find that the inclusion of aligned-spin effects significantly improves the astrophysical reach of the search. If the dimensionless spin of the black hole in astrophysical NS-BH systems were uniformly distributed between (-1,1), the sensitive volu...

  20. Atomic laser-beam finder.

    Science.gov (United States)

    Viering, Kirsten; Medellin, David; Mo, Jianyong; Raizen, Mark G

    2012-11-05

    We report on an experimental method to align a laser beam to a cloud of atoms trapped in a magneto-optical trap (MOT). We show how balanced lock-in detection leads to a very sensitive method to align the laser beam to the atoms in the plane perpendicular to the propagation direction. This provides a very reliable and fast way of aligning laser beams to atoms trapped in a MOT.

  1. Onorbit IMU alignment error budget

    Science.gov (United States)

    Corson, R. W.

    1980-01-01

    The Star Tracker, Crew Optical Alignment Sight (COAS), and Inertial Measurement Unit (IMU) from a complex navigation system with a multitude of error sources were combined. A complete list of the system errors is presented. The errors were combined in a rational way to yield an estimate of the IMU alignment accuracy for STS-1. The expected standard deviation in the IMU alignment error for STS-1 type alignments was determined to be 72 arc seconds per axis for star tracker alignments and 188 arc seconds per axis for COAS alignments. These estimates are based on current knowledge of the star tracker, COAS, IMU, and navigation base error specifications, and were partially verified by preliminary Monte Carlo analysis.

  2. Dose monitoring for boron neutron capture therapy using a reactor-based epithermal neutron beam

    Science.gov (United States)

    Raaijmakers, C. P. J.; Nottelman, E. L.; Konijnenberg, M. W.; Mijnheer, B. J.

    1996-12-01

    The aims of this study were (i) to determine the variation with time of the relevant beam parameters of a clinical reactor-based epithermal neutron beam for boron neutron capture therapy (BNCT) and (ii) to test a monitoring system for its applicability to monitor the dose delivered to the dose specification point in a patient treated with BNCT. For this purpose two fission chambers covered with Cd and two GM counters were positioned in the beam-shaping collimator assembly of the epithermal neutron beam. The monitor count rates were compared with in-phantom reference measurements of the thermal neutron fluence rate, the gamma-ray dose rate and the fast neutron dose rate, at a constant reactor power, over a period of 2 years. Differences in beam output, defined as the thermal neutron fluence rate at 2 cm depth in a phantom, of up to 15% were observed between various reactor cycles. A decrease in beam output of about 5% was observed in each reactor cycle. An unacceptable decrease of 50% in beam output due to malfunctioning of the beam filter assembly was detected. For safe and accurate treatment of patients, on-line monitoring of the beam is essential. Using the calibrated monitor system, the standard uncertainty in the total dose at depth due to variations with time of the beam output parameters has been reduced to a clinically acceptable value of 1% (one standard deviation).

  3. Study of a high power hydrogen beam diagnostic based on secondary electron emission

    Science.gov (United States)

    Sartori, E.; Panasenkov, A.; Veltri, P.; Serianni, G.; Pasqualotto, R.

    2016-11-01

    In high power neutral beams for fusion, beam uniformity is an important figure of merit. Knowing the transverse power profile is essential during the initial phases of beam source operation, such as those expected for the ITER heating neutral beam (HNB) test facility. To measure it a diagnostic technique is proposed, based on the collection of secondary electrons generated by beam-surface and beam-gas interactions, by an array of positively biased collectors placed behind the calorimeter tubes. This measurement showed in the IREK test stand good proportionality to the primary beam current. To investigate the diagnostic performances in different conditions, we developed a numerical model of secondary electron emission, induced by beam particle impact on the copper tubes, and reproducing the cascade of secondary emission caused by successive electron impacts. The model is first validated against IREK measurements. It is then applied to the HNB case, to assess the locality of the measurement, the proportionality to the beam current density, and the influence of beam plasma.

  4. Reconstruction of the Electron Density of Molecules with Single-Axis Alignment

    Energy Technology Data Exchange (ETDEWEB)

    Starodub, Dmitri

    2011-08-12

    Diffraction from the individual molecules of a molecular beam, aligned parallel to a single axis by a strong electric field or other means, has been proposed as a means of structure determination of individual molecules. As in fiber diffraction, all the information extractable is contained in a diffraction pattern from incidence of the diffracting beam normal to the molecular alignment axis. We present two methods of structure solution for this case. One is based on the iterative projection algorithms for phase retrieval applied to the coefficients of the cylindrical harmonic expansion of the molecular electron density. Another is the holographic approach utilizing presence of the strongly scattering reference atom for a specific molecule.

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    M. Dallavalle

    2013-01-01

    A new Muon misalignment scenario for 2011 (7 TeV) Monte Carlo re-processing was re-leased. The scenario is based on running of standard track-based reference-target algorithm (exactly as in data) using single-muon simulated sample (with the transverse-momentum spectrum matching data). It used statistics similar to what was used for alignment with 2011 data, starting from an initially misaligned Muon geometry from uncertainties of hardware measurements and using the latest Tracker misalignment geometry. Validation of the scenario (with muons from Z decay and high-pT simulated muons) shows that it describes data well. The study of systematic uncertainties (dominant by now due to huge amount of data collected by CMS and used for muon alignment) is finalised. Realistic alignment position errors are being obtained from the estimated uncertainties and are expected to improve the muon reconstruction performance. Concerning the Hardware Alignment System, the upgrade of the Barrel Alignment is in progress. By now, d...

  6. An adaptive laser beam shaping technique based on a genetic algorithm

    Institute of Scientific and Technical Information of China (English)

    Ping Yang; Yuan Liu; Wei Yang; Minwu Ao; Shijie Hu; Bing Xu; Wenhan Jiang

    2007-01-01

    @@ A new adaptive beam intensity shaping technique based on the combination of a 19-element piezo-electricity deformable mirror (DM) and a global genetic algorithm is presented. This technique can adaptively adjust the voltages of the 19 actuators on the DM to reduce the difference between the target beam shape and the actual beam shape. Numerical simulations and experimental results show that within the stroke range of the DM, this technique can be well used to create the given beam intensity profiles on the focal plane.

  7. Application of Diamond Based Beam Loss Monitors at LHC

    CERN Document Server

    AUTHOR|(CDS)2080642; Lohmann, W; Rüdiger, S

    2013-05-14

    The Large Hadron Collider (LHC) was conceived in the 1980s and started the operation in 2008. It needed more than 20 years to plan and construct this accelerator and its experiments. Four main experiments are located around the ring, Compact Muon Solenoid (CMS), A Toroidal LHC Apparatus (ATLAS), A Large Ion Collider Experiment (ALICE) and LHC beauty (LHCb). Two beams that traveling in opposite direction in the LHC tunnel, collide in each of the experiments. The navigation of the beams is done by over 10000 magnets and each beam has a stored energy of 362MJ which correspond to the kinetic energy of a train like the TGV travelling of 150km/h. Only a small percentage of that energy can damage the material in the LHC ring or the magnets. This would mean a repair time of months or years, without taking any data. To avoid such a scenario, it is important to monitor the beam condition and measure the amount of losses of the beam. Such losses can for example happen due to dust particles in the vacuum chambers or due...

  8. The refined theory of deep rectangular beams based on general solutions of elasticity

    Institute of Scientific and Technical Information of China (English)

    GAO; Yang; WANG; Minzhong

    2006-01-01

    The problem of deducing one-dimensional theory from two-dimensional theory for a homogeneous isotropic beam is investigated. Based on elasticity theory, the refined theory of rectangular beams is derived by using Papkovich-Neuber solution and Lur'e method without ad hoc assumptions. It is shown that the displacements and stresses of the beam can be represented by the angle of rotation and the deflection of the neutral surface. Based on the refined beam theory, the exact equations for the beam without transverse surface loadings are derived and consist of two governing differential equations: the fourth-order equation and the transcendental equation. The approximate equations for the beam under transverse loadings are derived directly from the refined beam theory and are almost the same as the governing equations of Timoshenko beam theory. In two examples, it is shown that the new theory provides better results than Levinson's beam theory when compared with those obtained from the linear theory of elasticity.

  9. Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

    Directory of Open Access Journals (Sweden)

    Chia-Han Chu

    Full Text Available This work presents a novel detection method for three-dimensional domain swapping (DS, a mechanism for forming protein quaternary structures that can be visualized as if monomers had "opened" their "closed" structures and exchanged the opened portion to form intertwined oligomers. Since the first report of DS in the mid 1990s, an increasing number of identified cases has led to the postulation that DS might occur in a protein with an unconstrained terminus under appropriate conditions. DS may play important roles in the molecular evolution and functional regulation of proteins and the formation of depositions in Alzheimer's and prion diseases. Moreover, it is promising for designing auto-assembling biomaterials. Despite the increasing interest in DS, related bioinformatics methods are rarely available. Owing to a dramatic conformational difference between the monomeric/closed and oligomeric/open forms, conventional structural comparison methods are inadequate for detecting DS. Hence, there is also a lack of comprehensive datasets for studying DS. Based on angle-distance (A-D image transformations of secondary structural elements (SSEs, specific patterns within A-D images can be recognized and classified for structural similarities. In this work, a matching algorithm to extract corresponding SSE pairs from A-D images and a novel DS score have been designed and demonstrated to be applicable to the detection of DS relationships. The Matthews correlation coefficient (MCC and sensitivity of the proposed DS-detecting method were higher than 0.81 even when the sequence identities of the proteins examined were lower than 10%. On average, the alignment percentage and root-mean-square distance (RMSD computed by the proposed method were 90% and 1.8Å for a set of 1,211 DS-related pairs of proteins. The performances of structural alignments remain high and stable for DS-related homologs with less than 10% sequence identities. In addition, the quality of its

  10. Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

    Science.gov (United States)

    Chu, Chia-Han; Lo, Wei-Cheng; Wang, Hsin-Wei; Hsu, Yen-Chu; Hwang, Jenn-Kang; Lyu, Ping-Chiang; Pai, Tun-Wen; Tang, Chuan Yi

    2010-10-14

    This work presents a novel detection method for three-dimensional domain swapping (DS), a mechanism for forming protein quaternary structures that can be visualized as if monomers had "opened" their "closed" structures and exchanged the opened portion to form intertwined oligomers. Since the first report of DS in the mid 1990s, an increasing number of identified cases has led to the postulation that DS might occur in a protein with an unconstrained terminus under appropriate conditions. DS may play important roles in the molecular evolution and functional regulation of proteins and the formation of depositions in Alzheimer's and prion diseases. Moreover, it is promising for designing auto-assembling biomaterials. Despite the increasing interest in DS, related bioinformatics methods are rarely available. Owing to a dramatic conformational difference between the monomeric/closed and oligomeric/open forms, conventional structural comparison methods are inadequate for detecting DS. Hence, there is also a lack of comprehensive datasets for studying DS. Based on angle-distance (A-D) image transformations of secondary structural elements (SSEs), specific patterns within A-D images can be recognized and classified for structural similarities. In this work, a matching algorithm to extract corresponding SSE pairs from A-D images and a novel DS score have been designed and demonstrated to be applicable to the detection of DS relationships. The Matthews correlation coefficient (MCC) and sensitivity of the proposed DS-detecting method were higher than 0.81 even when the sequence identities of the proteins examined were lower than 10%. On average, the alignment percentage and root-mean-square distance (RMSD) computed by the proposed method were 90% and 1.8Å for a set of 1,211 DS-related pairs of proteins. The performances of structural alignments remain high and stable for DS-related homologs with less than 10% sequence identities. In addition, the quality of its hinge loop

  11. Seeking the perfect alignment

    CERN Multimedia

    2002-01-01

    The first full-scale tests of the ATLAS Muon Spectrometer are about to begin in Prévessin. The set-up includes several layers of Monitored Drift Tubes Chambers (MDTs) and will allow tests of the performance of the detectors and of their highly accurate alignment system.   Monitored Drift Chambers in Building 887 in Prévessin, where they are just about to be tested. Muon chambers are keeping the ATLAS Muon Spectrometer team quite busy this summer. Now that most people go on holiday, the beam and alignment tests for these chambers are just starting. These chambers will measure with high accuracy the momentum of high-energy muons, and this implies very demanding requirements for their alignment. The MDT chambers consist of drift tubes, which are gas-filled metal tubes, 3 cm in diameter, with wires running down their axes. With high voltage between the wire and the tube wall, the ionisation due to traversing muons is detected as electrical pulses. With careful timing of the pulses, the position of the muon t...

  12. Study on the preparation of resist mask based on two-consecutive electron beam exposure

    Science.gov (United States)

    Leng, Yanbing; Wang, Li; Sun, Yanjun; Dong, Lianhe

    2016-10-01

    To overcome the alignment error caused by the overlay when the conventional electron beam lithography produces the four-step relief structure, the paper did a detailed research on the influence of different accelerating voltage on the exposure depth during the process of exposure. Therefore, it drew out the limit value of exposure depth under different accelerating voltage and the relationship between the electron beam energy and critical exposed dose. Through the analysis of the experimental results, it worked out the optimum process parameter combination of exposure. The accelerating voltage of the first exposure was 5keV and the exposed dose was 100μC/cm2, while the second accelerating voltage was 15keV and the exposed dose was 150μC/cm2. Finally, the four-step relief structure was made on the resist layer and this structure met the needs of the graphic transfer process on the etch mask.

  13. A Base-Emitter Self-Aligned Multi-Finger Si1-xGex/Si Power Heterojunction Bipolar Transistor

    Institute of Scientific and Technical Information of China (English)

    XUE Chun-Lai; YAO Fei; SHI Wen-Hua; CHENG Bu-Wen; WANG Hong-Jie; YU Jin-Zhong; WANG Qi-Ming

    2007-01-01

    With a crystal orientation dependent on the etch rate of Si in KOH-based solution, a base-emitter self-aligned large-area multi-finger configuration power SiGe heterojunction bipolar transistor (HBT) device (with an emitter area of about 880μm2) is fabricated with 2μm double-mesa technology. The maximum dc current gain is 226.1. The collector-emitter junction breakdown voltage BVCEO is 10V and the collector-base junction breakdown voltage BVcBo is 16 V with collector doping concentration of 1 × 1017 cm-3 and thickness of 400nm. The device exhibited a maximum oscillation frequency fmax of 35.5 GHz and a cut-off frequency fT of 24.9 GHz at a dc bias point of Ic = 70 mA and the voltage between collector and emitter is VCE = 3 V. Load pull measurements in class-A operation of the SiGe HBT are performed at 1.9 GHz with input power ranging from 0dBm to 21 dBm.A maximum output power of 29.9dBm (about 977mW) is obtained at an input power of 18.5dBm with a gain of 11.47dB. Compared to a non-self-aligned SiGe HBT with the same heterostructure and process, fmax and fT are improved by about 83.9% and 38.3%, respectively.

  14. Alignment of the drift tube detector at the neutrino oscillation experiment OPERA; Alignment des Driftroehrendetektors am Neutrino-Oszillationsexperiment OPERA

    Energy Technology Data Exchange (ETDEWEB)

    Goellnitz, Christoph

    2012-09-15

    The present thesis was composed during the course of the OPERA experiment, which aims to give a direct evidence for neutrino oscillations in the channel {nu}{sub {mu}} {yields} {nu}{sub {tau}}. The OPERA detector is designed to observe the appearance of tau neutrinos in an originally pure muon neutrino beam, the CNGS beam. As important part of the detector the precision tracker (PT), a drift tube detector, consists of 9504 drift tubes in 198 modules. In this thesis, several parts of the slow control of the PT are developed and implemented to ensure operation during data taking over several years. The main part is the geometric calibration, the alignment of the detector. The alignment procedure contains both hardware and software parts, the software methods are developed and applied. Using straight particle tracks, the detector components are geometrically corrected. A special challenge for the alignment for the PT is the fact that at this kind of low-rate experiment only a small number of particle tracks is available. With software-based corrections of the module rotation, a systematic error of 0.2 mrad has been attained, for corrections of translation, a systematic error of 32 {mu}m is reached. For the alignment between two adjacent PT walls, the statistical error is less than 8 {mu}m. All results of the position monitoring system are considered. All developed methods are tested with Monte Carlo simulations. The detector requirements ({Delta}p/p {<=} 0.25 below 25 GeV) are met. The analysis of the momentum measurement for high energies above 25 GeV demonstrates the resulting improvement. The mean momentum is falling significantly using the new alignment values. The significance of the detector alignment becomes most evident in the analysis of cosmic particles. The muon charge ratio R{sub {mu}} is expected not to be angular dependent. The {chi}{sup 2} probability of the measured distribution improves up to 58%. The muon charge ratio was also investigated in

  15. An investigation of acoustic beam patterns for the sonar localization problem using a beam based method.

    Science.gov (United States)

    Guarato, Francesco; Windmill, James; Gachagan, Anthony; Harvey, Gerald

    2013-06-01

    Target localization can be accomplished through an ultrasonic sonar system equipped with an emitter and two receivers. Time of flight of the sonar echoes allows the calculation of the distance of the target. The orientation can be estimated from knowledge of the beam pattern of the receivers and the ratio, in the frequency domain, between the emitted and the received signals after compensation for distance effects and air absorption. The localization method is described and, as its performance strongly depends on the beam pattern, the search of the most appropriate sonar receiver in order to ensure the highest accuracy of target orientation estimations is developed in this paper. The structure designs considered are inspired by the ear shapes of some bat species. Parameters like flare rate, truncation angle, and tragus are considered in the design of the receiver structures. Simulations of the localization method allow us to state which combination of those parameters could provide the best real world implementation. Simulation results show the estimates of target orientations are, in the worst case, 2° with SNR = 50 dB using the receiver structure chosen for a potential practical implementation of a sonar system.

  16. Concept for an advanced exotic beam facility based on ATLAS

    Energy Technology Data Exchange (ETDEWEB)

    Rehm, K.E.; Ahmad, I.; Back, B.B. [and others

    1995-08-01

    The acceleration of beams of unstable nuclei has opened up new research frontiers. Experiments at existing accelerators, and particularly at the first generation of radioactive ion beam facilities, have demonstrated convincingly that unique information becomes accessible. Critical cross sections for astrophysical processes that were impossible to obtain previously, qualitatively new and unexpected nuclear structure effects in nuclei far from stability, completely new approaches to studies of nuclear decays, reactions and structure, all have triggered much excitement for this new dimension in nuclear research. To explore this new dimension, an extension of present technical capabilities and facilities is needed. This need and its scientific basis were discussed in various workshops and symposia and in the Isospin Laboratory (ISL) White Paper. A report by the European community was published recently on prospects of radioactive beam facilities in Europe, and some next-generation projects for such facilities are starting in both Europe and Japan.

  17. Finite element analysis of rotating beams physics based interpolation

    CERN Document Server

    Ganguli, Ranjan

    2017-01-01

    This book addresses the solution of rotating beam free-vibration problems using the finite element method. It provides an introduction to the governing equation of a rotating beam, before outlining the solution procedures using Rayleigh-Ritz, Galerkin and finite element methods. The possibility of improving the convergence of finite element methods through a judicious selection of interpolation functions, which are closer to the problem physics, is also addressed. The book offers a valuable guide for students and researchers working on rotating beam problems – important engineering structures used in helicopter rotors, wind turbines, gas turbines, steam turbines and propellers – and their applications. It can also be used as a textbook for specialized graduate and professional courses on advanced applications of finite element analysis.

  18. Calibration and alignment of the CMS silicon tracking detector

    Energy Technology Data Exchange (ETDEWEB)

    Stoye, M.

    2007-07-15

    The Large Hadron Collider (LHC) will dominate the high energy physics program in the coming decade. The discovery of the standard model Higgs boson and the discovery of super-symmetric particles are within the reach at the energy scale explored by the LHC. However, the high luminosity and the high energy of the colliding protons lead to challenging demands on the detectors. The hostile radiation environment requires irradiation hard detectors, where the innermost subdetectors, consisting of silicon modules, are most affected. This thesis is devoted to the calibration and alignment of the silicon tracking detector. Electron test beam data, taken at DESY, have been used to investigate the performance of detector modules which previously were irradiated with protons up to a dose expected after 10 years of operation. The irradiated sensors turned out to be still better than required. The performance of the inner tracking systems will be dominated by the degree to which the positions of the sensors can be determined. Only a track based alignment procedure can reach the required precision. Such an alignment procedure is a major challenge given that about 50000 geometry constants need to be measured. Making use of the novel {chi}{sup 2} minimization program Millepede II an alignment strategy has been developed in which all detector components are aligned simultaneously, as many sources of information as possible are used, and all correlations between the position parameters of the detectors are taken into account. Utilizing simulated data, a proof of concept of the alignment strategy is shown. (orig.)

  19. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    2012-01-01

      The new alignment for the DT chambers has been successfully used in physics analysis starting with the 52X Global Tag. The remaining main areas of development over the next few months will be preparing a new track-based CSC alignment and producing realistic APEs (alignment position errors) and MC misalignment scenarios to match the latest muon alignment constants. Work on these items has been delayed from the intended timeline, mostly due to a large involvement of the muon alignment man-power in physics analyses over the first half of this year. As CMS keeps probing higher and higher energies, special attention must be paid to the reconstruction of very-high-energy muons. Recent muon POG reports from mid-June show a φ-dependence in curvature bias in Monte Carlo samples. This bias is observed already at the tracker level, where it is constant with muon pT, while it grows with pT as muon chamber information is added to the tracks. Similar studies show a much smaller effect in data, at le...

  20. Ergodic Secret Alignment

    CERN Document Server

    Bassily, Raef

    2010-01-01

    In this paper, we introduce two new achievable schemes for the fading multiple access wiretap channel (MAC-WT). In the model that we consider, we assume that perfect knowledge of the state of all channels is available at all the nodes in a causal fashion. Our schemes use this knowledge together with the time varying nature of the channel model to align the interference from different users at the eavesdropper perfectly in a one-dimensional space while creating a higher dimensionality space for the interfering signals at the legitimate receiver hence allowing for better chance of recovery. While we achieve this alignment through signal scaling at the transmitters in our first scheme (scaling based alignment (SBA)), we let nature provide this alignment through the ergodicity of the channel coefficients in the second scheme (ergodic secret alignment (ESA)). For each scheme, we obtain the resulting achievable secrecy rate region. We show that the secrecy rates achieved by both schemes scale with SNR as 1/2log(SNR...

  1. Coelostat and heliostat - Theory of alignment

    Science.gov (United States)

    Demianski, M.; Pasachoff, J. M.

    1984-06-01

    For perfectly aligned heliostats and coelostats tracking at the solar rate and half the solar rate, respectively, the solar beam has no translational motion. But, particularly in the field at eclipses, it is not possible to align heliostats and coelostats with infinite precision. The authors derive the effect of small misalignments on the translational motion of the beam, and give tables to allow the calculation of the accuracy to which the instruments must be mounted and adjusted to attain a desired accuracy over a given duration. Further, it is shown how to derive the necessary adjustments to improve alignment, given measurements of the tracking error.

  2. Pulse-mode measurement of electron beam halo using diamond-based detector

    Science.gov (United States)

    Aoyagi, Hideki; Asano, Yoshihiro; Itoga, Toshiro; Nariyama, Nobuteru; Bizen, Teruhiko; Tanaka, Takashi; Kitamura, Hideo

    2012-02-01

    Using a diamond-based detector, the electron beam halo in a high-energy accelerator can be measured with a lower detection limit than that using other instruments, such as a core monitor, a dose meter, or an optical fiber. We have successfully measured an electron beam halo using diamond-based detectors operating in the ionization mode, which were installed in the beam duct to measure the intensity of the beam halo directly. Pulse-by-pulse measurements were adopted to suppress the background noise efficiently. Feasibility tests on the diamond-based detector and beam halo monitor were performed in the beam dump area of the 8 GeV SPring-8 synchrotron booster and at the 250 MeV SPring-8 Compact SASE Source test accelerator for the SPring-8 Angstrom Compact free electron LAser (SACLA), respectively. We achieved a lower detection limit of 2×103electrons/pulse for single-shot measurement, which corresponds to a ratio of about 10-6 relative to the typical charge of the beam core of 0.3 pC. We also confirmed the feasibility of the electron beam halo monitor for use as an interlock sensor to protect undulator permanent magnets used in SACLA from radiation damage.

  3. The precision of respiratory-gated delivery of synchrotron-based pulsed beam proton therapy

    Energy Technology Data Exchange (ETDEWEB)

    Tsunashima, Yoshikazu; Vedam, Sastry; Dong Lei; Balter, Peter; Mohan, Radhe [Department of Radiation Physics, Unit 94, University of Texas M D Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX 77030 (United States); Umezawa, Masumi, E-mail: ytsunash@mdanderson.or [Accelerator System Group Medical System Project, Hitachi, Ltd, Energy and Environmental Systems Laboratory, 2-1, Omika-cho 7-chome, Hitachi-shi, Ibaraki-ken 319-1221 (Japan)

    2010-12-21

    A synchrotron-based proton therapy system operates in a low repetition rate pulsed beam delivery mode. Unlike cyclotron-based beam delivery, there is no guarantee that a synchrotron beam can be delivered effectively or precisely under the respiratory-gated mode. To evaluate the performance of gated synchrotron treatment, we simulated proton beam delivery in the synchrotron-based respiratory-gated mode using realistic patient breathing signals. Parameters used in the simulation were respiratory motion traces (70 traces from 24 patients), respiratory gate levels (10%, 20% and 30% duty cycles at the exhalation phase) and synchrotron magnet excitation cycles (T{sub cyc}) (fixed T{sub cyc} mode: 2.7, 3.0-6.0 s and each patient breathing cycle, and variable T{sub cyc} mode). The simulations were computed according to the breathing trace in which the proton beams were delivered. In the shorter fixed T{sub cyc} (<4 s), most of the proton beams were delivered uniformly to the target during the entire expiration phase of the respiratory cycle. In the longer fixed T{sub cyc} (>4 s) and the variable T{sub cyc} mode, the proton beams were not consistently delivered during the end-expiration phase of the respiratory cycle. However we found that the longer and variable T{sub cyc} operation modes delivered proton beams more precisely during irregular breathing.

  4. A beam monitor detector based on doped silica and optical fibres

    CERN Document Server

    Braccini, S; Giacoppo, F; Kreslo, I; Nesteruk, K P; Nirkko, M; Weber, M; Scampoli, P; Neff, M; Pilz, S; Romano, V

    2011-01-01

    A beam monitor detector based on doped silica and optical fibres has been designed, constructed and tested, mainly for accelerators used in medical applications. We conceived a general-purpose device, suitable either for low currents used in hadrontherapy or for high currents typical for radioisotope production, as well as for both pulsed and continuous beams. Scintillation light produced by Ce and Sb doped silica fibres moved across the beam is measured, giving information on its position, shape and intensity. The coupling of the doped fibre to an ordinary optical fibre allows the read-out of the signal far away from the radiation source. Mostly based on commercial components, the detector is easy to install and operate also in a high radiation environment due to the absence of any radiation sensitive electronics located near the fibre. The first successful beam tests triggered new developments toward the realization of a two-dimensional beam profiler and the miniaturization of the full device.

  5. Beta Beams: an accelerator based facility to explore Neutrino oscillation physics

    CERN Document Server

    Wildner, E; Hansen, C; De Melo Mendonca, T; Stora, T; Payet, J; Chance, A; Zorin, V; Izotov, I; Rasin, S; Sidorov, A; Skalyga, V; De Angelis, G; Prete, G; Cinausero, M; Kravchuk, VL; Gramegna, F; Marchi, T; Collazuol, G; De Rosa, G; Delbar, T; Loiselet, M; Keutgen, T; Mitrofanov, S; Lamy, T; Latrasse, L; Marie-Jeanne, M; Sortais, P; Thuillier, T; Debray, F; Trophime, C; Hass, M; Hirsh, T; Berkovits, D; Stahl, A

    2011-01-01

    The discovery that the neutrino changes flavor as it travels through space has implications for the Standard Model of particle physics (SM)[1]. To know the contribution of neutrinos to the SM, needs precise measurements of the parameters governing the neutrino oscillations. This will require a high intensity beam-based neutrino oscillation facility. The EURONu Design Study will review three currently accepted methods of realizing this facility (the so-called Super-Beams, Beta Beams and Neutrino Factories) and perform a cost assessment that, coupled with the physics performance, will give means to the European research authorities to make a decision on the layout and construction of the future European neutrino oscillation facility. ”Beta Beams” produce collimated pure electron neutrino and antineutrino beams by accelerating beta active ions to high energies and letting them decay in a race-track shaped storage ring. EURONu Beta Beams are based on CERNs infrastructure and the fact that some of the already ...

  6. Finite difference modeling of sinking stage curved beam based on revised Vlasov equations

    Institute of Scientific and Technical Information of China (English)

    张磊; 朱真才; 沈刚; 曹国华

    2015-01-01

    For the static analysis of the sinking stage curved beam, a finite difference model was presented based on the proposed revised Vlasov equations. First, revised Vlasov equations for thin-walled curved beams with closed sections were deduced considering the shear strain on the mid-surface of the cross-section. Then, the finite difference formulation of revised Vlasov equations was implemented with the parabolic interpolation based on Taylor series. At last, the finite difference model was built by substituting geometry and boundary conditions of the sinking stage curved beam into the finite difference formulation. The validity of present work is confirmed by the published literature and ANSYS simulation results. It can be concluded that revised Vlasov equations are more accurate than the original one in the analysis of thin-walled beams with closed sections, and that present finite difference model is applicable in the evaluation of the sinking stage curved beam.

  7. Neutron beam monitor based on a boron-coated GEM

    Institute of Scientific and Technical Information of China (English)

    周健荣; 李仪; 孙志嘉; 刘贲; 王艳凤; 杨桂安; 周良; 许虹; 董静; 杨雷

    2011-01-01

    A new thermal neutron beam monitor with a Gas Electron Multiplier (GEM) is developed to meet the needs of the next generation of neutron facilities. A prototype chamber has been constructed with two 100 mm×100 mm GEM foils. Enriched boron-10 is coated on

  8. Beam lead microelectronics. Citations from the NTIS data base

    Science.gov (United States)

    Reed, W. E.

    1980-04-01

    The technology and application of beam lead devices are treated in these Federally-sponsored research reports. Topics include design, fabrication, bonding, packaging, testing, and radiation hardening. This updated bibliography contains 85 abstracts, 4 of which are new entries to the previous edition.

  9. Amorphous Silicon Position Detectors for the Link Alignment System of the CMS Detector: Users Handbook

    Energy Technology Data Exchange (ETDEWEB)

    Calderon, A.; Gomez, G.; Gonzalez-Sanchez, F. J.; Martinez-Rivero, C.; Matorras, F.; Rodrigo, T.; Ruiz-Arbol, P.; Scodellaro, L.; Vila, I.; Virto, A. L.; Alberdi, J.; Arce, P.; Barcala, J.M.; Calvo, E.; Ferrando, A.; Josa, M. I.; Molinero, A.; Navarrete, J.; Oller, J. C.; Yuste, C.

    2007-07-01

    We present the general characteristics, calibration procedures and measured performance of the Amorphous Silicon Position Detectors installed in the Link Alignment System of the CMS Detector for laser beam detection and reconstruction and give the Data Base to be used as a Handbook during CMS operation. (Author) 10 refs.

  10. The design and construction of a pulsed beam generation system based on high intensity cyclotron

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    In order to perform the studies on a pulsed beam generation system based on a high intensity cyclotron, a test beam line with a pulsed beam generation for a 10 MeV compact cyclotron (CYCIAE-10) has been designed and constructed at China Institute of Atomic Energy (CIAE). A 70 MHz continuous H- beam can be pulsed to the pulse length of less than 10 ns with a repetition rate of 4.4 MHz. The sine waveform with a frequency of 2.2 MHz is adopted for the chopper and a mesh structure with single drift and dual gaps is used for the 70 MHz buncher. A helical resonator is designed and constructed based on simulations and experiments on the RF matching for the chopper. A helical inductance loop that is exceptionally large of its kind and equipped with water cooling for the resonator has been successfully wound and a 500 W solid RF amplifier has been manufactured. A special measuring device has been designed, which can be used to measure both the DC beam and the pulsed beam. The required pulsed beam was obtained after pulsed beam tuning.

  11. Optimal Position Estimation for the Automatic Alignment of a High Energy Laser

    Energy Technology Data Exchange (ETDEWEB)

    Candy, J V; Mcclay, W A; Awwal, A S; Ferguson, S W

    2004-07-20

    The alignment of high energy laser beams for potential fusion experiments demand high precision and accuracy by the underlying positioning algorithms whether it be for actuator control or monitoring the beam line for potential anomalies. This paper discusses the feasibility of employing on-line optimal position estimators in the form of model-based processors to achieve the desired results. Here we discuss the modeling, development, implementation and processing of model-based processors applied to both simulated and actual beam line data.

  12. Vibration Analysis of Randomly Oriented Carbon Nanotube Based on FGM Beam Using Timoshenko Theory

    Directory of Open Access Journals (Sweden)

    Mohammad Amin Rashidifar

    2015-02-01

    Full Text Available The carbon nanotube (CNT reinforced functionally graded materials (FGM are expected to be the new generation materials having wide range of unexplored potential applications in various technological areas such as aerospace and structural and chemical industry. The present work deals with the finite element modeling and free vibration analysis of CNT based functionally graded beam using three-dimensional Timoshenko beam theory. It has been assumed that the material properties of CNT based FG beam vary only along the thickness and these properties are evaluated by rule of mixture. The extended Hamilton principle has been applied to find out the governing equations of CNT based FG beam. Finite element method is used to solve governing equation with the exact shape functions. Initial analysis deals with CNTs assumed to be oriented along the length direction only. But practically it is not possible. So, further work deals with the free vibration analysis of functionally graded nanocomposite beams reinforced by randomly oriented straight single walled carbon nanotubes (SWCNTs. The Eshelby-Mori-Tanaka approach based on an equivalent fiber is used to investigate the material properties of the beam. Results are presented in tabular and graphical forms to show the effects of carbon nanotube orientations, slenderness ratios, and boundary conditions on the dynamic behavior of the beam.

  13. Electron Optic Design of Arrayed E-Beam Microcolumns Based Systems for Wafer Defects Inspection

    CERN Document Server

    Kazmiruk, V V

    2008-01-01

    In this paper is considered a matter of the system for wafer defect inspection (WDIS) practical realization. Such systems are on the agenda as the next generation and substitution for light optics and single $e$-beam based WDISs.

  14. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.

    Science.gov (United States)

    Michel, Audrey M; Mullan, James P A; Velayudhan, Vimalkumar; O'Connor, Patrick B F; Donohue, Claire A; Baranov, Pavel V

    2016-01-01

    Ribosome profiling (ribo-seq) is a technique that uses high-throughput sequencing to reveal the exact locations and densities of translating ribosomes at the entire transcriptome level. The technique has become very popular since its inception in 2009. Yet experimentalists who generate ribo-seq data often have to rely on bioinformaticians to process and analyze their data. We present RiboGalaxy ( http://ribogalaxy.ucc.ie ), a freely available Galaxy-based web server for processing and analyzing ribosome profiling data with the visualization functionality provided by GWIPS-viz ( http://gwips.ucc.ie ). RiboGalaxy offers researchers a suite of tools specifically tailored for processing ribo-seq and corresponding mRNA-seq data. Researchers can take advantage of the published workflows which reduce the multi-step alignment process to a minimum of inputs from the user. Users can then explore their own aligned data as custom tracks in GWIPS-viz and compare their ribosome profiles to existing ribo-seq tracks from published studies. In addition, users can assess the quality of their ribo-seq data, determine the strength of the triplet periodicity signal, generate meta-gene ribosome profiles as well as analyze the relative impact of mRNA sequence features on local read density. RiboGalaxy is accompanied by extensive documentation and tips for helping users. In addition we provide a forum ( http://gwips.ucc.ie/Forum ) where we encourage users to post their questions and feedback to improve the overall RiboGalaxy service.

  15. Fusion angle affects intervertebral adjacent spinal segment joint forces-Model-based analysis of patient specific alignment.

    Science.gov (United States)

    Senteler, Marco; Weisse, Bernhard; Rothenfluh, Dominique A; Farshad, Mazda T; Snedeker, Jess G

    2017-01-01

    This study addresses the hypothesis that adjacent segment intervertebral joint loads are sensitive to the degree of lordosis that is surgically imposed during vertebral fusion. Adjacent segment degeneration is often observed after lumbar fusion, but a causative mechanism is not yet clearly evident. Altered kinematics of the adjacent segments and potentially nonphysiological mechanical joint loads have been implicated in this process. However, little is known of how altered alignment and kinematics influence loading of the adjacent intervertebral joints under consideration of active muscle forces. This study investigated these effects by simulating L4/5 fusions using kinematics-driven musculoskeletal models of one generic and eight sagittal alignment-specific models. Models featured different spinopelvic configurations but were normalized by body height, masses, and muscle properties. Fusion of the L4/5 segment was implemented in an in situ (22°), hyperlordotic (32°), and hypolordotic (8°) fashion and kinematic input parameters were changed accordingly based on findings of an in vitro investigation. Bending motion from upright standing to 45° forward flexion and back was simulated for all models in intact and fused conditions. Joint loads at adjacent levels and moment arms of spinal muscles experienced changes after all types of fusion. Hypolordotic configuration led to an increase of adjacent segment (L3/4) shear forces of 29% on average, whereas hyperlordotic fusion reduced shear by 39%. Overall, L4/5 in situ fusion resulted in intervertebral joint forces closest to intact loading conditions. An artificial decrease in lumbar lordosis (minus 14° on average) caused by an L4/5 fusion lead to adverse loading conditions, particularly at the cranial adjacent levels, and altered muscle moment arms, in particular for muscles in the vicinity of the fusion. © 2016 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 35:131-139, 2017.

  16. Organizational Alignment Through Information Technology: A Web-Based Approach to Change

    Science.gov (United States)

    Heinrichs, W.; Smith, J.

    1999-01-01

    This paper reports on the effectiveness of web-based internet tools and databases to facilitate integration of technical organizations with interfaces that minimize modification of each technical organization.

  17. Generation of electron beams from a laser-based advanced accelerator at Shanghai Jiao Tong University

    CERN Document Server

    Elsied, Ahmed M M; Li, Song; Mirzaie, Mohammad; Sokollik, Thomas; Zhang, Jie

    2014-01-01

    At Shanghai Jiao Tong University, we have established a research laboratory for advanced acceleration research based on high-power lasers and plasma technologies. In a primary experiment based on the laser wakefield acceleration (LWFA) scheme, multi-hundred MeV electron beams having a reasonable quality are generated using 20-40 TW, 30 femtosecond laser pulses interacting independently with helium, neon, nitrogen and argon gas jet targets. The laser-plasma interaction conditions are optimized for stabilizing the electron beam generation from each type of gas. The electron beam pointing angle stability and divergence angle as well as the energy spectra from each gas jet are measured and compared.

  18. Structured light sheet fluorescence microscopy based on four beam interference.

    Science.gov (United States)

    Lei, Ming; Zumbusch, Andreas

    2010-08-30

    A 3D structured light sheet microscope using a four-faceted symmetric pyramid is presented. The sample is illuminated by the resulting four beam interference field. This approach combines advantages of standing wave and structured illumination microscopy. Examples of micrographs of fluorescently labeled Chinese hamster ovary (CHO) cells as well as of the compound eyes of drosophila are shown and the optical sectioning ability of our system is demonstrated. The capabilities and the limitations of the scheme are discussed.

  19. High power, fast, microwave components based on beam generated plasmas

    Science.gov (United States)

    Manheimer, W. M.; Fernsler, R. F.; Gitlin, M. S.

    1998-10-01

    It is shown that the agile mirror plasma, under development as a device to simply and cheaply give electronic steering to microwave beams, also has application as a fast, electronically controlled, high power reflector, or phase shifter. In a radar system, this can lead to such applications as pulse to pulse polarization agility and electronic control of antenna gain, as well as to innovative approaches to high power millimeter wave circulators. The basic theory of the enhanced glow plasma is also developed.

  20. ECR ion source based low energy ion beam facility

    Indian Academy of Sciences (India)

    P Kumar; G Rodrigues; U K Rao; C P Safvan; D Kanjilal; A Roy

    2002-11-01

    Mass analyzed highly charged ion beams of energy ranging from a few keV to a few MeV plays an important role in various aspects of research in modern physics. In this paper a unique low energy ion beam facility (LEIBF) set up at Nuclear Science Centre (NSC) for providing low and medium energy multiply charged ion beams ranging from a few keV to a few MeV for research in materials sciences, atomic and molecular physics is described. One of the important features of this facility is the availability of relatively large currents of multiply charged positive ions from an electron cyclotron resonance (ECR) source placed entirely on a high voltage platform. All the electronic and vacuum systems related to the ECR source including 10 GHz ultra high frequency (UHF) transmitter, high voltage power supplies for extractor and Einzel lens are placed on a high voltage platform. All the equipments are controlled using a personal computer at ground potential through optical fibers for high voltage isolation. Some of the experimental facilities available are also described.

  1. Excimer Laser Beam Analyzer Based on CVD Diamond

    Science.gov (United States)

    Girolami, Marco; Salvatori, Stefano; Conte, Gennaro

    2010-11-01

    1-D and 2-D detector arrays have been realized on CVD-diamond. The relatively high resistivity of diamond in the dark allowed the fabrication of photoconductive "sandwich" strip (1D) or pixel (2D) detectors: a semitransparent light-receiving back-side contact was used for detector biasing. Cross-talk between pixels was limited by using intermediate guard contacts connected at the same ground potential of the pixels. Each pixel photocurrent was conditioned by a read-out electronics composed by a high sensitive integrator and a Σ-Δ ADC converter. The overall 500 μs conversion time allowed a data acquisition rate up to 2 kSPS. The measured fast photoresponse of the samples in the ns time regime suggests to use the proposed devices for fine tuning feedback of high-power pulsed-laser cavities, whereas solar-blindness guarantees high performance in UV beam diagnostics also under high intensity background illumination. Offering unique properties in terms of thermal conductivity and visible-light transparency, diamond represents one of the most suitable candidate for the detection of high-power UV laser emission. The technology of laser beam profiling is evolving with the increase of excimer lasers applications that span from laser-cutting to VLSI and MEMS technologies. Indeed, to improve emission performances, fine tuning of the laser cavity is required. In such a view, the development of a beam-profiler, able to work in real-time between each laser pulse, is mandatory.

  2. Development of an Efficient Steel Beam Section for Modular Construction Based on Six-Sigma

    Directory of Open Access Journals (Sweden)

    Tae-Hyu Ha

    2016-01-01

    Full Text Available This study presents a systematic approach for the development of an efficient steel beam section for modular construction based on Six-Sigma. Although the Six-Sigma is frequently implemented in manufacturing and other service industries, it is a relatively new concept in the area of building design and construction. As a first step in this approach, market studies and surveys are conducted to obtain the opinions of potential customers. Then the opinions of customers are converted into quality characteristics for the steel beam using the quality function deployment methodology. A steel hollow flanged channel is chosen as the main modular beam shape, and the design concept is derived and developed by applying the Pugh matrix methodology. A pilot test was performed to validate the effectiveness of the developed beam section. The results indicated that the developed channel beam section showed excellent performance and retained high accuracy in fabrication, thus resulting in a significant reduction of steel consumption.

  3. Compact beam splitters based on self-imaging phenomena in one-dimensional photonic crystal waveguides

    Institute of Scientific and Technical Information of China (English)

    Bing Chen; Lin Huang; Yongdong Li; Chunliang Liu; Guizhong Liu

    2012-01-01

    A fundamental 1 ×2 beam splitter based on the self-imaging phenomena in multi-mode one-dimensional (1D) photonic crystal (PC) waveguides is presented,and its transmission characteristics are investigated using the finite-difference time-domain method.Calculated results indicate that a high transmittance (>95%) can be observed within a wide frequency band for the 1×2 beam splitter without complicated structural optimizations.In this letter,a simple and compact 1 ×4 beam splitter is constructed by combining the fundamental 1 ×2 beam splitter with the flexible bends of 1D PC waveguides.Such beam splitters can be applied to highly dense photonic integrated circuits.

  4. Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and detailed phylogenetic analysis.

    Science.gov (United States)

    Mallatt, Jon; Craig, Catherine Waggoner; Yoder, Matthew J

    2012-09-01

    This study presents a manually constructed alignment of nearly complete rRNA genes from most animal clades (371 taxa from ~33 of the ~36 metazoan phyla), expanded from the 197 sequences in a previous study. This thorough, taxon-rich alignment, available at http://www.wsu.edu/~jmallatt/research/rRNAalignment.html and in the Dryad Repository (doi: http://dx.doi.org/10.5061/dryad.1v62kr3q), is based rigidly on the secondary structure of the SSU and LSU rRNA molecules, and is annotated in detail, including labeling of the erroneous sequences (contaminants). The alignment can be used for future studies of the molecular evolution of rRNA. Here, we use it to explore if the larger number of sequences produces an improved phylogenetic tree of animal relationships. Disappointingly, the resolution did not improve, neither when the standard maximum-likelihood method was used, nor with more sophisticated methods that partitioned the rRNA into paired and unpaired sites (stem, loop, bulge, junction), or accounted for the evolution of the paired sites. For example, no doublet model of paired-site substitutions (16-state, 16A and 16B, 7A-F, or 6A-C models) corrected the placement of any rogue taxa or increased resolution. The following findings are from the simplest, standard, ML analysis. The 371-taxon tree only imperfectly supported the bilaterian clades of Lophotrochozoa and Ecdysozoa, and this problem remained after 17 taxa with unstably positioned sequences were omitted from the analysis. The problem seems to stem from base-compositional heterogeneity across taxa and from an overrepresentation of highly divergent sequences among the newly added taxa (e.g., sequences from Cephalopoda, Rotifera, Acoela, and Myxozoa). The rogue taxa continue to concentrate in two locations in the rRNA tree: near the base of Arthropoda and of Bilateria. The approximately uncertain (AU) test refuted the monophyly of Mollusca and of Chordata, probably due to long-branch attraction of the highly

  5. RNA Structural Alignments, Part I

    DEFF Research Database (Denmark)

    Havgaard, Jakob Hull; Gorodkin, Jan

    2014-01-01

    Simultaneous alignment and secondary structure prediction of RNA sequences is often referred to as "RNA structural alignment." A class of the methods for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and alig...... the methods based on the Sankoff algorithm. All the practical implementations of the algorithm use heuristics to make them run in reasonable time and memory. These heuristics are also described in this chapter.......Simultaneous alignment and secondary structure prediction of RNA sequences is often referred to as "RNA structural alignment." A class of the methods for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and aligns...... two or more sequences. The advantage of this algorithm over those that separate the folding and alignment steps is that it makes better predictions. The disadvantage is that it is slower and requires more computer memory to run. The amount of computational resources needed to run the Sankoff algorithm...

  6. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and Y. Pakhotin

    2012-01-01

      A new track-based alignment for the DT chambers is ready for deployment: an offline tag has already been produced which will become part of the 52X Global Tag. This alignment was validated within the muon alignment group both at low and high momentum using a W/Z skim sample. It shows an improved mass resolution for pairs of stand-alone muons, improved curvature resolution at high momentum, and improved DT segment extrapolation residuals. The validation workflow for high-momentum muons used to depend solely on the “split cosmics” method, looking at the curvature difference between muon tracks reconstructed in the upper or lower half of CMS. The validation has now been extended to include energetic muons decaying from heavily boosted Zs: the di-muon invariant mass for global and stand-alone muons is reconstructed, and the invariant mass resolution is compared for different alignments. The main areas of development over the next few months will be preparing a new track-based C...

  7. Aligning Web-Based Tools to the Research Process Cycle: A Resource for Collaborative Research Projects

    Science.gov (United States)

    Price, Geoffrey P.; Wright, Vivian H.

    2012-01-01

    Using John Creswell's Research Process Cycle as a framework, this article describes various web-based collaborative technologies useful for enhancing the organization and efficiency of educational research. Visualization tools (Cacoo) assist researchers in identifying a research problem. Resource storage tools (Delicious, Mendeley, EasyBib)…

  8. Component alignment and functional outcome following computer assisted and jig based total knee arthroplasty

    Directory of Open Access Journals (Sweden)

    Dnyanesh G Lad

    2013-01-01

    Conclusions: A significantly improved placement of the component was found in the coronal and sagittal planes of the tibial component by CAS. The placement of the components in the other planes was comparable with the values recorded in the jig-based surgery group. Functional outcome was not significantly different.

  9. Bright single photon source based on self-aligned quantum dot–cavity systems

    DEFF Research Database (Denmark)

    Maier, Sebastian; Gold, Peter; Forchel, Alfred;

    2014-01-01

    We report on a quasi-planar quantum-dot-based single-photon source that shows an unprecedented high extraction efficiency of 42% without complex photonic resonator geometries or post-growth nanofabrication. This very high efficiency originates from the coupling of the photons emitted by a quantum...

  10. Aligning Cost Assessment with Community-Based Participatory Research: The Kin Keeper (superscript SM) Intervention

    Science.gov (United States)

    Meghea, Cristian Ioan; Williams, Karen Patricia

    2015-01-01

    The few existing economic evaluations of community-based health promotion interventions were reported retrospectively at the end of the trial. We report an evaluation of the costs of the Kin Keeper(superscript SM) Cancer Prevention Intervention, a female family-focused educational intervention for underserved women applied to increase breast and…

  11. 基于布尔逻辑的双序列搜索比对算法%Pairwise Sequences Search and Alignment Algorithm Based on Boolean Logic

    Institute of Scientific and Technical Information of China (English)

    郭宁; 冯萍; 康继昌

    2011-01-01

    Traditional pairwise sequences alignment algorithms are mostly based on dynamic programming, there are some problems when using dynamic programming to align for its slow speed and low accuracy. Pairwise sequences search and alignment algorithm based on Boolean logic is proposed in this paper. The algorithm searches homologous regions in the pairwise sequence using a fixed-length base fragment in one sequence, and performs the alignment between the homologous regions at once, including the alignment of the bases in the homologous regions and the alignment between the subsequence and the other sequence. It also makes use of concurrent execution mechanism to realize the parallel speed up. Simulation experimental results show that the algorithm has higer real-time and accuracy.%传统双序列比对算法使用动态规划进行序列比对的速度慢,且准确性不高.为解决该问题,提出一种基于布尔逻辑的双序列搜索比对算法.根据一条序列中定长的碱基片段搜索2条序列的相似区,对相似区进行比对,包括相似区中碱基的比对以及子序列与另一条序列的比对,并通过并行执行机制实现加速比对.仿真实验结果表明,该算法具有较高的准确性和较好的实时性.

  12. Local topological charge analysis of electromagnetic vortex beam based on empirical mode decomposition

    CERN Document Server

    Hui, Xiaonan; Zhang, Weite; Jin, Xiaofeng; Chi, Hao; Zhang, Xianmin

    2015-01-01

    The topological charge of an electromagnetic vortex beam depends on its wavefront helicity. For mixed vortex beams composed of several different coaxial vortices, the topological charge spectrum can be obtained by Fourier transform. However, the vortex beam is generally divergent and imperfect. It makes it significant to investigate the local topological charges, especially in radio frequency regime. Fourier transform based methods are restrained by the uncertainty principle and cannot achieve high angular resolution and mode resolution simultaneously. In this letter, an analysis method for local topological charges of vortex beams is presented based on the empirical mode decomposition (EMD). From EMD, the intrinsic mode functions (IMFs) can be obtained to construct the bases of the electromagnetic wave, and each local topological charge can be respectively defined. With this method the local value achieves both high resolution of azimuth angle and topological charge, meanwhile the amplitudes of each OAM mode...

  13. The CMS Silicon Tracker Alignment

    CERN Document Server

    Castello, R

    2008-01-01

    The alignment of the Strip and Pixel Tracker of the Compact Muon Solenoid experiment, with its large number of independent silicon sensors and its excellent spatial resolution, is a complex and challenging task. Besides high precision mounting, survey measurements and the Laser Alignment System, track-based alignment is needed to reach the envisaged precision.\\\\ Three different algorithms for track-based alignment were successfully tested on a sample of cosmic-ray data collected at the Tracker Integration Facility, where 15\\% of the Tracker was tested. These results, together with those coming from the CMS global run, will provide the basis for the full-scale alignment of the Tracker, which will be carried out with the first \\emph{p-p} collisions.

  14. Towards 3D ultrasound image based soft tissue tracking: a transrectal ultrasound prostate image alignment system

    CERN Document Server

    Baumann, Michael; Daanen, Vincent; Troccaz, Jocelyne

    2007-01-01

    The emergence of real-time 3D ultrasound (US) makes it possible to consider image-based tracking of subcutaneous soft tissue targets for computer guided diagnosis and therapy. We propose a 3D transrectal US based tracking system for precise prostate biopsy sample localisation. The aim is to improve sample distribution, to enable targeting of unsampled regions for repeated biopsies, and to make post-interventional quality controls possible. Since the patient is not immobilized, since the prostate is mobile and due to the fact that probe movements are only constrained by the rectum during biopsy acquisition, the tracking system must be able to estimate rigid transformations that are beyond the capture range of common image similarity measures. We propose a fast and robust multi-resolution attribute-vector registration approach that combines global and local optimization methods to solve this problem. Global optimization is performed on a probe movement model that reduces the dimensionality of the search space a...

  15. The polarization-based collimated beam combiner and the proposed NOVA fringe tracker (NFT) for the VLTI

    NARCIS (Netherlands)

    Meisner, J.A.; Jaffe, W.J.; Le Poole, R.S.; Pereira, S.F.; Quirrenbach, A.; Raban, D.; Vosteen, A.

    2010-01-01

    The Polarization-Based Collimated Beam Combiner efficiently produces pairwise interference between beams from multiple telescopes. An important feature is achieving ”Photometric Symmetry” whereby interference measurements have no first-order sensitivity to wavefront perturbations (or photometric var

  16. The polarization-based collimated beam combiner and the proposed NOVA fringe tracker (NFT) for the VLTI

    NARCIS (Netherlands)

    Meisner, J.A.; Jaffe, W.J.; Poole, R.S. le; Pereira, S.F.; Quirrenbach, A.; Raban, D.; Vosteen, L.L.A.

    2010-01-01

    The Polarization-Based Collimated Beam Combiner efficiently produces pairwise interference between beams from multiple telescopes. An important feature is achieving "Photometric Symmetry" whereby interference measurements have no first-order sensitivity to wavefront perturbations (or photometric var

  17. GraphAlignment: Bayesian pairwise alignment of biological networks

    Directory of Open Access Journals (Sweden)

    Kolář Michal

    2012-11-01

    Full Text Available Abstract Background With increased experimental availability and accuracy of bio-molecular networks, tools for their comparative and evolutionary analysis are needed. A key component for such studies is the alignment of networks. Results We introduce the Bioconductor package GraphAlignment for pairwise alignment of bio-molecular networks. The alignment incorporates information both from network vertices and network edges and is based on an explicit evolutionary model, allowing inference of all scoring parameters directly from empirical data. We compare the performance of our algorithm to an alternative algorithm, Græmlin 2.0. On simulated data, GraphAlignment outperforms Græmlin 2.0 in several benchmarks except for computational complexity. When there is little or no noise in the data, GraphAlignment is slower than Græmlin 2.0. It is faster than Græmlin 2.0 when processing noisy data containing spurious vertex associations. Its typical case complexity grows approximately as O(N2.6. On empirical bacterial protein-protein interaction networks (PIN and gene co-expression networks, GraphAlignment outperforms Græmlin 2.0 with respect to coverage and specificity, albeit by a small margin. On large eukaryotic PIN, Græmlin 2.0 outperforms GraphAlignment. Conclusions The GraphAlignment algorithm is robust to spurious vertex associations, correctly resolves paralogs, and shows very good performance in identification of homologous vertices defined by high vertex and/or interaction similarity. The simplicity and generality of GraphAlignment edge scoring makes the algorithm an appropriate choice for global alignment of networks.

  18. Aligned carbon nanotubes catalytically grown on iron-based nanoparticles obtained by laser-induced CVD

    OpenAIRE

    Le Normand, Francois; Cojocaru, Costel Sorin; Ersen, Ovidiu; Legagneux, Pierre; Gangloff, Laurent; Fleaca, C.; Alexandrescu, Rodica; Dumitrache, Florin; Morjan, Ion

    2007-01-01

    International audience; Iron-based nanoparticles are prepared by a laser-induced chemical vapor deposition (CVD) process. They are characterized as body-centered Fe and Fe2O3 (maghemite/magnetite) particles with sizes ::;5 and 10 nm, respectively. The Fe particles are embedded in a protective carbon matrix. Both kind of particles are dispersed by spin-coating on SiO2/Si(1 0 0) flat substrates. They are used as catalyst to grow carbon nanotubes by a plasma- and filaments-assisted catalytic CVD...

  19. Shape-based assessment of vertebral fracture risk in postmenopausal women using discriminative shape alignment

    DEFF Research Database (Denmark)

    Crimi, Alessandro; Loog, Marco; de Bruijne, Marleen

    2012-01-01

    but the result of a decaying process. To evaluate fracture risk, a shape-based classifier, identifying possible small prefracture deformities, may be constructed. MATERIALS AND METHODS: During a longitudinal case-control study, a large population of postmenopausal women, fracture free at baseline, were followed....... The 22 women who sustained at least one lumbar fracture on follow-up represented the case group. The control group comprised 91 women who maintained skeletal integrity and matched the case group according to the standard osteoporosis risk factors. On radiographs, a radiologist and two technicians...

  20. Automatic alignment of double optical paths in excimer laser amplifier

    Science.gov (United States)

    Wang, Dahui; Zhao, Xueqing; Hua, Hengqi; Zhang, Yongsheng; Hu, Yun; Yi, Aiping; Zhao, Jun

    2013-05-01

    A kind of beam automatic alignment method used for double paths amplification in the electron pumped excimer laser system is demonstrated. In this way, the beams from the amplifiers can be transferred along the designated direction and accordingly irradiate on the target with high stabilization and accuracy. However, owing to nonexistence of natural alignment references in excimer laser amplifiers, two cross-hairs structure is used to align the beams. Here, one crosshair put into the input beam is regarded as the near-field reference while the other put into output beam is regarded as the far-field reference. The two cross-hairs are transmitted onto Charge Coupled Devices (CCD) by image-relaying structures separately. The errors between intersection points of two cross-talk images and centroid coordinates of actual beam are recorded automatically and sent to closed loop feedback control mechanism. Negative feedback keeps running until preset accuracy is reached. On the basis of above-mentioned design, the alignment optical path is built and the software is compiled, whereafter the experiment of double paths automatic alignment in electron pumped excimer laser amplifier is carried through. Meanwhile, the related influencing factors and the alignment precision are analyzed. Experimental results indicate that the alignment system can achieve the aiming direction of automatic aligning beams in short time. The analysis shows that the accuracy of alignment system is 0.63μrad and the beam maximum restoration error is 13.75μm. Furthermore, the bigger distance between the two cross-hairs, the higher precision of the system is. Therefore, the automatic alignment system has been used in angular multiplexing excimer Main Oscillation Power Amplification (MOPA) system and can satisfy the requirement of beam alignment precision on the whole.

  1. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Kim Taeho

    2010-09-01

    Full Text Available Abstract Background There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited in their ability to handle very large amounts of sequences because the system lacks a scalable high-performance computing (HPC environment with a greatly extended data storage capacity. Results We designed ClustalXeed, a software system for multiple sequence alignment with incremental improvements over previous versions of the ClustalX and ClustalW-MPI software. The primary advantage of ClustalXeed over other multiple sequence alignment software is its ability to align a large family of protein or nucleic acid sequences. To solve the conventional memory-dependency problem, ClustalXeed uses both physical random access memory (RAM and a distributed file-allocation system for distance matrix construction and pair-align computation. The computation efficiency of disk-storage system was markedly improved by implementing an efficient load-balancing algorithm, called "idle node-seeking task algorithm" (INSTA. The new editing option and the graphical user interface (GUI provide ready access to a parallel-computing environment for users who seek fast and easy alignment of large DNA and protein sequence sets. Conclusions ClustalXeed can now compute a large volume of biological sequence data sets, which were not tractable in any other parallel or single MSA program. The main developments include: 1 the ability to tackle larger sequence alignment problems than possible with previous systems through markedly improved storage-handling capabilities. 2 Implementing an efficient task load-balancing algorithm, INSTA, which improves overall processing times for multiple sequence alignment with input sequences of non-uniform length. 3 Support for both single PC and distributed cluster systems.

  2. Vertically aligned ZnO nanorod grown by hydrothermal based chemical method on glass substrate

    Science.gov (United States)

    Srivastava, R.; Majumdar, S.; Bhunia, S.

    2012-06-01

    A low-temperature and effective precursor-based method has been demonstrated to synthesize nanostructured ZnO. It is found that the morphology of ZnO precursors has a strong dependence on the reaction conditions that include the molar ratio of reagents, solvent, and reaction temperature. In this work, ZnO nanostructures were synthesized via hydrothermal based chemical method. Zinc acetate dehydrate [Zn(Ac)2 2H2O] and 1-propanol(C3H8O) were adopted for a seed layer growth on glass substrate via spin coating technique. Zinc nitrate hexahydrate [Zn(NO3)2 6H2O], hexamethylenetetramine(C6H12N4) and diethylamine(C4H11N) were adopted as synthesis precursors. The ZnO nanostructures obtained were characterized by scanning electronic microscopy (SEM) and the PL method. The SEM image of the sample showed that the thin film of ZnO on glass substrate has, predominantly, a nanometric rod-like morphology with hexagonal wurtzite structure.

  3. A surrogate-based metaheuristic global search method for beam angle selection in radiation treatment planning

    Science.gov (United States)

    Zhang, H. H.; Gao, S.; Chen, W.; Shi, L.; D'Souza, W. D.; Meyer, R. R.

    2013-03-01

    An important element of radiation treatment planning for cancer therapy is the selection of beam angles (out of all possible coplanar and non-coplanar angles in relation to the patient) in order to maximize the delivery of radiation to the tumor site and minimize radiation damage to nearby organs-at-risk. This category of combinatorial optimization problem is particularly difficult because direct evaluation of the quality of treatment corresponding to any proposed selection of beams requires the solution of a large-scale dose optimization problem involving many thousands of variables that represent doses delivered to volume elements (voxels) in the patient. However, if the quality of angle sets can be accurately estimated without expensive computation, a large number of angle sets can be considered, increasing the likelihood of identifying a very high quality set. Using a computationally efficient surrogate beam set evaluation procedure based on single-beam data extracted from plans employing equally-spaced beams (eplans), we have developed a global search metaheuristic process based on the nested partitions framework for this combinatorial optimization problem. The surrogate scoring mechanism allows us to assess thousands of beam set samples within a clinically acceptable time frame. Tests on difficult clinical cases demonstrate that the beam sets obtained via our method are of superior quality.

  4. Reference Beam Pattern Design for Frequency Invariant Beamforming Based on Fast Fourier Transform.

    Science.gov (United States)

    Zhang, Wang; Su, Tao

    2016-09-22

    In the field of fast Fourier transform (FFT)-based frequency invariant beamforming (FIB), there is still an unsolved problem. That is the selection of the reference beam to make the designed wideband pattern frequency invariant (FI) over a given frequency range. This problem is studied in this paper. The research shows that for a given array, the selection of the reference beam pattern is determined by the number of sensors and the ratio of the highest frequency to the lowest frequency of the signal (RHL). The length of the weight vector corresponding to a given reference beam pattern depends on the reference frequency. In addition, the upper bound of the weight length to ensure the FI property over the whole frequency band of interest is also given. When the constraints are added to the reference beam, it does not affect the FI property of the designed wideband beam as long as the symmetry of the reference beam is ensured. Based on this conclusion, a scheme for reference beam design is proposed.

  5. CT based treatment planning system of proton beam therapy for ocular melanoma

    Energy Technology Data Exchange (ETDEWEB)

    Nakano, Takashi E-mail: tnakano@med.gunma-u.ac.jp; Kanai, Tatsuaki; Furukawa, Shigeo; Shibayama, Kouichi; Sato, Sinichiro; Hiraoka, Takeshi; Morita, Shinroku; Tsujii, Hirohiko

    2003-09-01

    A computed tomography (CT) based treatment planning system of proton beam therapy was established specially for ocular melanoma treatment. A technique of collimated proton beams with maximum energy of 70 MeV are applied for treatment for ocular melanoma. The vertical proton beam line has a range modulator for spreading beams out, a multi-leaf collimator, an aperture, light beam localizer, field light, and X-ray verification system. The treatment planning program includes; eye model, selecting the best direction of gaze, designing the shape of aperture, determining the proton range and range modulation necessary to encompass the target volume, and indicating the relative positions of the eyes, beam center and creation of beam aperture. Tumor contours are extracted from CT/MRI images of 1 mm thickness by assistant by various information of fundus photography and ultrasonography. The CT image-based treatment system for ocular melanoma is useful for Japanese patients as having thick choroid membrane in terms of dose sparing to skin and normal organs in the eye. The characteristics of the system and merits/demerits were reported.

  6. Final focus test beam

    Energy Technology Data Exchange (ETDEWEB)

    1991-03-01

    This report discusses the following: the Final Focus Test Beam Project; optical design; magnets; instrumentation; magnetic measurement and BPM calibration; mechanical alignment and stabilization; vacuum system; power supplies; control system; radiation shielding and personnel protection; infrastructure; and administration.

  7. Evaluation of an image-based tracking workflow with Kalman filtering for automatic image plane alignment in interventional MRI.

    Science.gov (United States)

    Neumann, M; Cuvillon, L; Breton, E; de Matheli, M

    2013-01-01

    Recently, a workflow for magnetic resonance (MR) image plane alignment based on tracking in real-time MR images was introduced. The workflow is based on a tracking device composed of 2 resonant micro-coils and a passive marker, and allows for tracking of the passive marker in clinical real-time images and automatic (re-)initialization using the microcoils. As the Kalman filter has proven its benefit as an estimator and predictor, it is well suited for use in tracking applications. In this paper, a Kalman filter is integrated in the previously developed workflow in order to predict position and orientation of the tracking device. Measurement noise covariances of the Kalman filter are dynamically changed in order to take into account that, according to the image plane orientation, only a subset of the 3D pose components is available. The improved tracking performance of the Kalman extended workflow could be quantified in simulation results. Also, a first experiment in the MRI scanner was performed but without quantitative results yet.

  8. Acoustic Emission Analysis of Damage during Compressive Deformation of Amorphous Zr-Based Foams with Aligned, Elongated Pores

    Science.gov (United States)

    Cox, Marie E.; Dunand, David C.

    2013-07-01

    Acoustic emission methods are used to investigate the evolution of internal microfractural damage during uniaxial compression of amorphous Zr-based foams with aligned, elongated pores. The foams are fabricated by means of densifying a blend of crystalline W powders and amorphous Zr-based powders with two oxygen contents (0.078 and 0.144 wt pct) by warm equal channel angular extrusion, followed by dissolution of the elongated W phase from the fully densified amorphous matrix. For the high-oxygen foams, prior powder boundaries in the amorphous struts promote damage that accumulates during compression, resulting in energy-absorbing properties comparable with the low-oxygen foams without stress-concentrating powder boundaries. The influence of pore orientation on the evolution of microfracture damage and the ability of the foams to accumulate damage without catastrophic failure is also investigated: pores oriented from 24 to 68 deg to the loading direction promote wall bending, resulting in foams with more diffuse damage and better energy-absorbing properties.

  9. ALIGNING INFORMATION SECURITY WITH THE IMAGE OF THE ORGANIZATION AND PRIORITIZATION BASED ON FUZZY LOGIC FOR THE INDUSTRIAL AUTOMATION SECTOR

    Directory of Open Access Journals (Sweden)

    Adolfo Alberto Vanti

    2011-12-01

    Full Text Available This paper develops the strategic alignment of organizational behavior through the organizations´ image, prioritization and information security practices. To this end, information security is studied based on the business requirements of confidentiality, integrity and availability by applying a tool which integrates the strategic, tactical and operational vision through the following framework: Balanced Scorecard - BSC (strategic x Control Objectives for Information and Related Technology - COBIT (tactical x International Organization for Standardization - ISO/International Electro Technical Commission - IEC27002 (operational. Another image instrument of the organization is applied in parallel with this analysis to identify and analyze performance involving profiles related to mechanistic, psychic prisons, political systems, instruments of domination, organisms, cybernetics, flux and transformation (MORGAN, 1996. Finally, a model of strategic prioritization, based on compensatory fuzzy logic (ESPIN and VANTI, 2005, is applied. The method was applied to an industrial company located in southern Brazil. The results with the application show two organizational images: "organism" and "flux and transformation ". The strategic priorities indicated a significant search for new business services and international markets. Regarding protection of information, security found the gap between "minimum" and "Reasonable" and in domain 8 (HR of standard ISO/IEC27002, considered 71% protection as "inappropriate" and "minimal" in the IT Governance context.

  10. Deformable image registration for cone-beam CT guided transoral robotic base-of-tongue surgery

    Science.gov (United States)

    Reaungamornrat, S.; Liu, W. P.; Wang, A. S.; Otake, Y.; Nithiananthan, S.; Uneri, A.; Schafer, S.; Tryggestad, E.; Richmon, J.; Sorger, J. M.; Siewerdsen, J. H.; Taylor, R. H.

    2013-07-01

    Transoral robotic surgery (TORS) offers a minimally invasive approach to resection of base-of-tongue tumors. However, precise localization of the surgical target and adjacent critical structures can be challenged by the highly deformed intraoperative setup. We propose a deformable registration method using intraoperative cone-beam computed tomography (CBCT) to accurately align preoperative CT or MR images with the intraoperative scene. The registration method combines a Gaussian mixture (GM) model followed by a variation of the Demons algorithm. First, following segmentation of the volume of interest (i.e. volume of the tongue extending to the hyoid), a GM model is applied to surface point clouds for rigid initialization (GM rigid) followed by nonrigid deformation (GM nonrigid). Second, the registration is refined using the Demons algorithm applied to distance map transforms of the (GM-registered) preoperative image and intraoperative CBCT. Performance was evaluated in repeat cadaver studies (25 image pairs) in terms of target registration error (TRE), entropy correlation coefficient (ECC) and normalized pointwise mutual information (NPMI). Retraction of the tongue in the TORS operative setup induced gross deformation >30 mm. The mean TRE following the GM rigid, GM nonrigid and Demons steps was 4.6, 2.1 and 1.7 mm, respectively. The respective ECC was 0.57, 0.70 and 0.73, and NPMI was 0.46, 0.57 and 0.60. Registration accuracy was best across the superior aspect of the tongue and in proximity to the hyoid (by virtue of GM registration of surface points on these structures). The Demons step refined registration primarily in deeper portions of the tongue further from the surface and hyoid bone. Since the method does not use image intensities directly, it is suitable to multi-modality registration of preoperative CT or MR with intraoperative CBCT. Extending the 3D image registration to the fusion of image and planning data in stereo-endoscopic video is anticipated to

  11. Aligned carbon nanotubes catalytically grown on iron-based nanoparticles obtained by laser-induced CVD

    Energy Technology Data Exchange (ETDEWEB)

    Le Normand, F. [Groupe Surfaces and Interfaces, IPCMS, UMR 7504 CNRS, Bat 70, 23 rue du Loess, 67034 Strasbourg Cedex (France)], E-mail: Francois.Le-Normand@ipcms.u-strasbg.fr; Cojocaru, C.S.; Ersen, O. [Groupe Surfaces and Interfaces, IPCMS, UMR 7504 CNRS, Bat 70, 23 rue du Loess, 67034 Strasbourg Cedex (France); Legagneux, P.; Gangloff, L. [THALES R and T, Departementale 128, 91747 Palaiseau Cedex (France); Fleaca, C. [Groupe Surfaces and Interfaces, IPCMS, UMR 7504 CNRS, Bat 70, 23 rue du Loess, 67034 Strasbourg Cedex (France); National Institute for Lasers, Plasma and Radiation Physics, Laser Department, P.O. Box MG-36, R-76900 Bucharest (Romania); Alexandrescu, R.; Dumitrache, F.; Morjan, I. [National Institute for Lasers, Plasma and Radiation Physics, Laser Department, P.O. Box MG-36, R-76900 Bucharest (Romania)

    2007-12-15

    Iron-based nanoparticles are prepared by a laser-induced chemical vapor deposition (CVD) process. They are characterized as body-centered Fe and Fe{sub 2}O{sub 3} (maghemite/magnetite) particles with sizes {<=}5 and 10 nm, respectively. The Fe particles are embedded in a protective carbon matrix. Both kind of particles are dispersed by spin-coating on SiO{sub 2}/Si(1 0 0) flat substrates. They are used as catalyst to grow carbon nanotubes by a plasma- and filaments-assisted catalytic CVD process (PE-HF-CCVD). Vertically oriented and thin carbon nanotubes (CNTs) were grown with few differences between the two samples, except the diameter in relation to the initial size of the iron particles, and the density. The electron field emission of these samples exhibit quite interesting behavior with a low turn-on voltage at around 1 V/{mu}m.

  12. Aligned carbon nanotubes catalytically grown on iron-based nanoparticles obtained by laser-induced CVD

    Science.gov (United States)

    Le Normand, F.; Cojocaru, C. S.; Ersen, O.; Legagneux, P.; Gangloff, L.; Fleaca, C.; Alexandrescu, R.; Dumitrache, F.; Morjan, I.

    2007-12-01

    Iron-based nanoparticles are prepared by a laser-induced chemical vapor deposition (CVD) process. They are characterized as body-centered Fe and Fe 2O 3 (maghemite/magnetite) particles with sizes ≤5 and 10 nm, respectively. The Fe particles are embedded in a protective carbon matrix. Both kind of particles are dispersed by spin-coating on SiO 2/Si(1 0 0) flat substrates. They are used as catalyst to grow carbon nanotubes by a plasma- and filaments-assisted catalytic CVD process (PE-HF-CCVD). Vertically oriented and thin carbon nanotubes (CNTs) were grown with few differences between the two samples, except the diameter in relation to the initial size of the iron particles, and the density. The electron field emission of these samples exhibit quite interesting behavior with a low turn-on voltage at around 1 V/μm.

  13. CoMFA 3D-QSAR Analysis of Epothilones Based on Docking Conformation and Alignment

    Institute of Scientific and Technical Information of China (English)

    YUAN,Wei; LUAN,Lin-Bo; LI,Yan-Ni

    2007-01-01

    Epothilones belong to a class of novel microtubule stabilizing and anti-mitotic agents.which have a paclitaxel-like mechanism of action.A three-dimensional quantitative structure-activity relationship(3D-QSAR)model was built for epothilones by the method of comparative molecular field analysis (CoMFA)combined with the flexible docking technology.The docking CoMFA model gave a good cross-validated value of q2=0.784 with an optimized component of 6 and the conventional correlation coefficient of r2=0.985.The statistical results show that the model has good ability to predict the activity of the studied compounds.At last.the docking CoMFA model was analyzed through contour maps complemented with MOLCAD-generated active site potential surface in the α,β-tubulin receptor,which can provide important information for the structure-based drug design.

  14. Modulation Transfer Function of a Gaussian Beam Based on the Generalized Modified Atmospheric Spectrum

    Directory of Open Access Journals (Sweden)

    Chao Gao

    2016-01-01

    Full Text Available This paper investigates the modulation transfer function of a Gaussian beam propagating through a horizontal path in weak-fluctuation non-Kolmogorov turbulence. Mathematical expressions are obtained based on the generalized modified atmospheric spectrum, which includes the spectral power law value of non-Kolmogorov turbulence, the finite inner and outer scales of turbulence, and other optical parameters of the Gaussian beam. The numerical results indicate that the atmospheric turbulence would produce less negative effects on the wireless optical communication system with an increase in the inner scale of turbulence. Additionally, the increased outer scale of turbulence makes a Gaussian beam influenced more seriously by the atmospheric turbulence.

  15. T-shaped polarization beam splitter based on two-dimensional photonic crystal waveguide structures

    Science.gov (United States)

    Li, Xinlan; Shen, Hongjun; Li, Ting; Liu, Jie; Huang, Xianjian

    2016-12-01

    A T-shaped polarization beam splitter based on two-dimensional photonic crystal is proposed, which is composed of three waveguides: one input and two output. Unpolarized beams incident from the input port will be separated into two different polarization modes and outputted individually by two different coupling structures. Simulation results can be obtained by the finite-difference time-domain (FDTD) method. In the normalized frequency range of 0.3456 extinction ratio is all 30dB for both modes. The polarization beam splitter attains the requirement we expected by analyzing simulation results.

  16. Strengthening of reinforced concrete beams with basalt-based FRP sheets: An analytical assessment

    Science.gov (United States)

    Nerilli, Francesca; Vairo, Giuseppe

    2016-06-01

    In this paper the effectiveness of the flexural strengthening of RC beams through basalt fiber-reinforced sheets is investigated. The non-linear flexural response of RC beams strengthened with FRP composites applied at the traction side is described via an analytical formulation. Validation results and some comparative analyses confirm soundness and consistency of the proposed approach, and highlight the good mechanical performances (in terms of strength and ductility enhancement of the beam) produced by basalt-based reinforcements in comparison with traditional glass or carbon FRPs.

  17. Polarization Beam Splitter Based on a Self-Collimation Michelson Interferometer in a Silicon Photonic Crystal

    Institute of Scientific and Technical Information of China (English)

    CHEN Xi-Yao; LIN Gui-Min; LI Jun-Jun; XU Xiao-Fu; JIANG Jun-Zhen; QIANG Ze-Xuan; QIU Yi-Shen; LI Hui

    2012-01-01

    A polarization beam splitter based on a self-collimation Michelson interferometer (SMI) in a hole-type silicon photonic crystal is proposed and numerically demonstrated.Utilizing the polarization dependence of the transmission spectra of the SMI and polarization peak matching method,the SMI can work as a polarization beam splitter (PBS) by selecting an appropriate path length difference in the structure.Based on its novel polarization beam splitting mechanics,the polarization extinction ratios (PERs) for TM and TE modes are as high as 18.4 dB and 24.3 dB,respectively.Since its dimensions are only several operating wavelengths,the PBS may have practical applications in photonic integrated circuits.%A polarization beam splitter based on a self-collimation Michelson interferometer (SMI) in a hole-type silicon photonic crystal is proposed and numerically demonstrated. Utilizing the polarization dependence of the transmission spectra of the SMI and polarization peak matching method, the SMI can work as a polarization beam splitter (PBS) by selecting an appropriate path length difference in the structure. Based on its novel polarization beam splitting mechanics, the polarization extinction ratios (PERs) for TM and TE modes are as high as 18.4 dB and 24.3 dB, respectively. Since its dimensions are only several operating wavelengths, the PBS may have practical applications in photonic integrated circuits.

  18. Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS): A web-based tool for addressing the challenges of cross-species extrapolation of chemical toxicity

    Science.gov (United States)

    Conservation of a molecular target across species can be used as a line-of-evidence to predict the likelihood of chemical susceptibility. The web-based Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) tool was developed to simplify, streamline, and quantitat...

  19. Load history-based model for prestressed concrete beam damage evaluation

    Institute of Scientific and Technical Information of China (English)

    Yuan Jianli; Wang Yi; Qian Zhonghui

    2007-01-01

    The residual capability of a damaged structure to resist further load is essential in optimal seismic design and post-earthquake strengthening.An experimental study on the hysteretic characteristics of prestressed concrete frame beams under different loading histories was performed to explore the influence of load history on energy dissipation and failure characteristics of the member.Based on the test results,the failure of the beam is defined,and the relationship between the failure moment under cyclic load and from the skeleton curve is formulated.Finally,based on displacement and energy dissipation,a model for prestressed concrete beam damage-failure evaluation is developed.In this model,the effect of deformation level,cumulative dissipated energy,and loading history on prestressed concrete beam damage-failure is incorporated,thus it is applicable to stochastic earthquake forces.

  20. Demonstration of Cathode Emittance Dominated High Bunch Charge Beams in a DC gun-based Photoinjector

    CERN Document Server

    Gulliford, Colwyn; Bazarov, Ivan; Dunham, Bruce; Cultrera, Luca

    2015-01-01

    We present the results of transverse emittance and longitudinal current profile measurements of high bunch charge (greater than or equal to 100 pC) beams produced in the DC gun-based Cornell Energy Recovery Linac Photoinjector. In particular, we show that the cathode thermal and core beam emittances dominate the final 95% and core emittance measured at 9-9.5 MeV. Additionally, we demonstrate excellent agreement between optimized 3D space charge simulations and measurement, and show that the quality of the transverse laser distribution limits the optimal simulated and measured emittances. These results, previously thought achievable only with RF guns, demonstrate that DC gun based photoinjectors are capable of delivering beams with sufficient single bunch charge and beam quality suitable for many current and next generation accelerator projects such as Energy Recovery Linacs (ERLs) and Free Electron Lasers (FELs).

  1. Scanning laser beam displays based on a 2D MEMS

    Science.gov (United States)

    Niesten, Maarten; Masood, Taha; Miller, Josh; Tauscher, Jason

    2010-05-01

    The combination of laser light sources and MEMS technology enables a range of display systems such as ultra small projectors for mobile devices, head-up displays for vehicles, wearable near-eye displays and projection systems for 3D imaging. Images are created by scanning red, green and blue lasers horizontally and vertically with a single two-dimensional MEMS. Due to the excellent beam quality of laser beams, the optical designs are efficient and compact. In addition, the laser illumination enables saturated display colors that are desirable for augmented reality applications where a virtual image is used. With this technology, the smallest projector engine for high volume manufacturing to date has been developed. This projector module has a height of 7 mm and a volume of 5 cc. The resolution of this projector is WVGA. No additional projection optics is required, resulting in an infinite focus depth. Unlike with micro-display projection displays, an increase in resolution will not lead to an increase in size or a decrease in efficiency. Therefore future projectors can be developed that combine a higher resolution in an even smaller and thinner form factor with increased efficiencies that will lead to lower power consumption.

  2. Thermal Conductivity of Polymer-Based Composites with Magnetic Aligned Hexagonal Boron Nitride Platelets.

    Science.gov (United States)

    Yuan, Chao; Duan, Bin; Li, Lan; Xie, Bin; Huang, Mengyu; Luo, Xiaobing

    2015-06-17

    Hexagonal boron nitride (hBN) platelets are widely used as the reinforcing fillers for enhancing the thermal conductivity of polymer-based composites. Since hBN platelets have high aspect ratio and show a highly anisotropic thermal property, the thermal conductivity of the hBNs-filled composites should be strongly associated with the platelets' orientation. However, the orientation effect has been explored less frequently due to the technical difficulties in precontrol of the platelets' orientation in the polymer matrix. In this paper, we report the use of magnetic fields to assemble the platelets into various microstructures and to study the thermal conductivities of the designed composites. The experimental results showed that thermal conductivities are dramatically different among these composites. For instance, the thermal conductivities of the composites with platelets oriented parallel and perpendicular to the heat flux direction are respectively 44.5% higher and 37.9% lower than that of unaligned composites at the volume fraction of 9.14%. The results were also analyzed by a theoretical model. The model suggests that the orientation of the hBN platelets is the main reason for the variance in the thermal conductivity.

  3. Study on forming directivity with constant beam width in low frequency based on small sensor

    Institute of Scientific and Technical Information of China (English)

    HUI Junying; LIU Hong; YU Huabing; LIANG Guolong

    2001-01-01

    Based on a combined sensor with the size of 10 cm, a narrow beam with a constant receiving beam width of 20 degree has been formed in low frequency from several Hz to thousands of Hz by using simple adaptive algorithm. The results of theoretical simulation,laboratory experiment and lake experiment with one-dimension and two-dimension combined sensors have been given.

  4. Progressive multiple sequence alignments from triplets

    Directory of Open Access Journals (Sweden)

    Stadler Peter F

    2007-07-01

    Full Text Available Abstract Background The quality of progressive sequence alignments strongly depends on the accuracy of the individual pairwise alignment steps since gaps that are introduced at one step cannot be removed at later aggregation steps. Adjacent insertions and deletions necessarily appear in arbitrary order in pairwise alignments and hence form an unavoidable source of errors. Research Here we present a modified variant of progressive sequence alignments that addresses both issues. Instead of pairwise alignments we use exact dynamic programming to align sequence or profile triples. This avoids a large fractions of the ambiguities arising in pairwise alignments. In the subsequent aggregation steps we follow the logic of the Neighbor-Net algorithm, which constructs a phylogenetic network by step-wisely replacing triples by pairs instead of combining pairs to singletons. To this end the three-way alignments are subdivided into two partial alignments, at which stage all-gap columns are naturally removed. This alleviates the "once a gap, always a gap" problem of progressive alignment procedures. Conclusion The three-way Neighbor-Net based alignment program aln3nn is shown to compare favorably on both protein sequences and nucleic acids sequences to other progressive alignment tools. In the latter case one easily can include scoring terms that consider secondary structure features. Overall, the quality of resulting alignments in general exceeds that of clustalw or other multiple alignments tools even though our software does not included heuristics for context dependent (mismatch scores.

  5. Coarse Alignment of Marine Strapdown INS Based on the Trajectory Fitting of Gravity Movement in the Inertial Space

    Directory of Open Access Journals (Sweden)

    Lin Zhao

    2016-10-01

    Full Text Available A ship experiences the random motion of sea waves during its travels. Hence, the coarse alignment of the marine strapdown Inertial Navigation System (INS suffers from rocking disturbances such as pitch and roll. In this paper, a novel approach of marine coarse alignment was proposed for avoiding the resulting loss of accuracy from rocking disturbances. Unlike several current techniques, our alignment scheme is intuitional and concise. Moreover, the coarse alignment can be implemented without any external information. The gravity vector and its derivative expressed within the inertial frame can describe the attitude matrix between an inertial frame and the local geographic frame. We address the challenge of calculating the gravity derivative by the least-squares fitting of the trajectory of the gravity movement in the inertial frame. Meanwhile, the integration of angular rates measured by gyroscopes allows one to compute the attitude matrix between the inertial frame and the body frame. The coarse alignment can be thus accomplished by the combination of the above two attitude matrices. The experimental results show that the coarse alignment is effective with high accuracy and stability for demanding marine applications.

  6. Lasso整脸形状回归的人脸配准算法%Lasso Based Shape Regression for Face Alignment

    Institute of Scientific and Technical Information of China (English)

    杨律; 丁守鸿; 谢志峰; 马利庄

    2015-01-01

    人脸配准是人脸识别、美化和面部表情分析等人脸相关应用的重要组成部分,这些应用通过人脸配准以精准定位人脸五官及面部轮廓特征点。在整脸形状回归的人脸配准框架基础上,使用 Lasso 回归来解决人脸配准问题,提出基于 Lasso 的整脸回归人脸配准算法。首先对人脸配准过程中的回归系数施加 L1模惩罚,以在不牺牲效果的基础上减少模型大小;然后提出人脸变换比例调整方法,在回归过程中使用人脸变换比例对特征点位置进行调整,用于解决小规模样本条件下不同尺度样本相互干扰的问题。在相关数据集上的实验结果表明,该算法配准精确度高,可以达到实时的速度,且适用于不同姿态下的人脸配准问题。%Face alignment focuses on the problem for localizing facial landmarks and it is an important topic of face recognition, beautification and facial expression analysis etc. Based on Explicit Shape Regression (ESR) framework, we proposed a face alignment algorithm using Lasso regression by adding aL1 norm con-straint on the model parameters to reduce the size of shape model while maintaining the resultant perform-ance. Meanwhile, a face ratio transformation method is proposed by using the face ratio to adjust the estima-tion result of face landmarks. The method can be used to solve the problem of mutual influence among various training samples in different scales. Experimental results show that the overall system performs well in related dataset and it can run in real-time and be insensitive to human faces in multiple poses.

  7. Vibration-Based Damage Detection in Beams by Cooperative Coevolutionary Genetic Algorithm

    Directory of Open Access Journals (Sweden)

    Kittipong Boonlong

    2014-03-01

    Full Text Available Vibration-based damage detection, a nondestructive method, is based on the fact that vibration characteristics such as natural frequencies and mode shapes of structures are changed when the damage happens. This paper presents cooperative coevolutionary genetic algorithm (CCGA, which is capable for an optimization problem with a large number of decision variables, as the optimizer for the vibration-based damage detection in beams. In the CCGA, a minimized objective function is a numerical indicator of differences between vibration characteristics of the actual damage and those of the anticipated damage. The damage detection in a uniform cross-section cantilever beam, a uniform strength cantilever beam, and a uniform cross-section simply supported beam is used as the test problems. Random noise in the vibration characteristics is also considered in the damage detection. In the simulation analysis, the CCGA provides the superior solutions to those that use standard genetic algorithms presented in previous works, although it uses less numbers of the generated solutions in solution search. The simulation results reveal that the CCGA can efficiently identify the occurred damage in beams for all test problems including the damage detection in a beam with a large number of divided elements such as 300 elements.

  8. Polar POLICRYPS diffractive structures generate cylindrical vector beams

    Energy Technology Data Exchange (ETDEWEB)

    Alj, Domenico; Caputo, Roberto, E-mail: roberto.caputo@fis.unical.it; Umeton, Cesare [Department of Physics and CNR-NANOTEC University of Calabria, I-87036 Rende (CS) (Italy); Paladugu, Sathyanarayana [Soft Matter Lab, Department of Physics, Bilkent University, Ankara 06800 (Turkey); Volpe, Giovanni [Soft Matter Lab, Department of Physics, Bilkent University, Ankara 06800 (Turkey); UNAM-National Nanotechnology Research Center, Bilkent University, Ankara 06800 (Turkey)

    2015-11-16

    Local shaping of the polarization state of a light beam is appealing for a number of applications. This can be achieved by employing devices containing birefringent materials. In this article, we present one such enables converting a uniformly circularly polarized beam into a cylindrical vector beam (CVB). This device has been fabricated by exploiting the POLICRYPS (POlymer-LIquid CRYstals-Polymer-Slices) photocuring technique. It is a liquid-crystal-based optical diffraction grating featuring polar symmetry of the director alignment. We have characterized the resulting CVB profile and polarization for the cases of left and right circularly polarized incoming beams.

  9. CATO: The Clone Alignment Tool.

    Directory of Open Access Journals (Sweden)

    Peter V Henstock

    Full Text Available High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1 a top-level summary of the top candidate sequences aligned to each reference sequence, 2 a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3 a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow.

  10. CATO: The Clone Alignment Tool.

    Science.gov (United States)

    Henstock, Peter V; LaPan, Peter

    2016-01-01

    High-throughput cloning efforts produce large numbers of sequences that need to be aligned, edited, compared with reference sequences, and organized as files and selected clones. Different pieces of software are typically required to perform each of these tasks. We have designed a single piece of software, CATO, the Clone Alignment Tool, that allows a user to align, evaluate, edit, and select clone sequences based on comparisons to reference sequences. The input and output are designed to be compatible with standard data formats, and thus suitable for integration into a clone processing pipeline. CATO provides both sequence alignment and visualizations to facilitate the analysis of cloning experiments. The alignment algorithm matches each of the relevant candidate sequences against each reference sequence. The visualization portion displays three levels of matching: 1) a top-level summary of the top candidate sequences aligned to each reference sequence, 2) a focused alignment view with the nucleotides of matched sequences displayed against one reference sequence, and 3) a pair-wise alignment of a single reference and candidate sequence pair. Users can select the minimum matching criteria for valid clones, edit or swap reference sequences, and export the results to a summary file as part of the high-throughput cloning workflow.

  11. The Study of a Beam Profile Monitor based on Faraday Cup Array

    Energy Technology Data Exchange (ETDEWEB)

    Park, K. M.; Park, S. H.; Kim, S. G.; Kwon, H. J.; Cho, Y. S. [KAERI, Daejeon (Korea, Republic of)

    2015-05-15

    The metal can then be discharged to measure a small current equivalent to the number of impinging ions. The beam current can be measured and used to determine the number of ions or electrons hitting the cup. Recently, beam profile monitor (BPM) based on Faraday cup array (FCA), which represented beam position through the spatial and temporal distribution of the beam current, has been studied due to advantages of measure of wide-range ion beam current. FCA system is divided into a FC, an electrical circuit and display parts. We have studied FCA to monitor beam profile on an electrostatic accelerator with wide-range ion current. In this paper, we represented basic characteristics and designs for the fabricated FCA. FCA system, which consisted of FC system, electronic readout system, and output display, was suggested to measure ion beam current, efficiently. FC system consisted of a collimator, suppressor, tiny FC, insulator frame, and circuit board divided into elec PCB, cap PCB, and con PCB. FC size was 4 mm diameters and FCA system was considered as 8 x 8 array and whole size of 8 x 8 mm''2. FCA system was set-up in vacuum chamber and an integrator and output display parts were formed out of chamber to minimize number of feed-through.

  12. Design and analysis of automotive carbon fiber composite bumper beam based on finite element analysis

    Directory of Open Access Journals (Sweden)

    Tie Wang

    2015-06-01

    Full Text Available In this article, the most important part of the automotive front bumper system, namely, the bumper beam, is studied by changing the material and thickness to improve the crashworthiness performance in low-velocity impact. According to the low-speed standard of automotives stated in E.C.E. United Nations Agreement, Regulation no. 42, the low-velocity impact simulation based on finite element analysis is carried out. Lightweight is the main purpose of this article. First, the bumper beam analysis is accomplished for carbon fiber composite and steel material to analyze their deformation, weight, impact force, energy absorption, and the acceleration of the impactor. As a consequence, the bumper beam made by carbon fiber composite achieves better impact behavior. Second, on the purpose of lightweight, the bumper beams of different thickness including 5.4, 6, 6.6, and 7.2 mm are investigated. The results show that the 5.4 mm bumper beam is the best selection without sacrificing the impact performance. Third, according to the stress distribution, the thickness distribution of the bumper beam is changed to get better lightweight results. It is indicated that the weight of the improved bumper beam is further reduced and the impact performance is not weakened.

  13. CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy.

    Science.gov (United States)

    Zuo, Guanghong; Hao, Bailin

    2015-10-01

    A faithful phylogeny and an objective taxonomy for prokaryotes should agree with each other and ultimately follow the genome data. With the number of sequenced genomes reaching tens of thousands, both tree inference and detailed comparison with taxonomy are great challenges. We now provide one solution in the latest Release 3.0 of the alignment-free and whole-genome-based web server CVTree3. The server resides in a cluster of 64 cores and is equipped with an interactive, collapsible, and expandable tree display. It is capable of comparing the tree branching order with prokaryotic classification at all taxonomic ranks from domains down to species and strains. CVTree3 allows for inquiry by taxon names and trial on lineage modifications. In addition, it reports a summary of monophyletic and non-monophyletic taxa at all ranks as well as produces print-quality subtree figures. After giving an overview of retrospective verification of the CVTree approach, the power of the new server is described for the mega-classification of prokaryotes and determination of taxonomic placement of some newly-sequenced genomes. A few discrepancies between CVTree and 16S rRNA analyses are also summarized with regard to possible taxonomic revisions. CVTree3 is freely accessible to all users at http://tlife.fudan.edu.cn/cvtree3/ without login requirements.

  14. An electrical bio-chip to transfer and detect electromagnetic stimulation on the cells based on vertically aligned carbon nanotubes.

    Science.gov (United States)

    Rafizadeh-Tafti, Saeed; Haqiqatkhah, Mohammad Hossein; Saviz, Mehrdad; Janmaleki, Mohsen; Faraji Dana, Reza; Zanganeh, Somayeh; Abdolahad, Mohammad

    2017-01-01

    A highly sensitive impedimetric bio-chip based on vertically aligned multiwall carbon nanotubes (VAMWCNTs), was applied in direct interaction with lung cancer cells. Our tool provided both inducing and monitoring the bioelectrical changes in the cells initiated by electromagnetic (EM) wave stimulation. EM wave of 940MHz frequency with different intensities was used. Here, wave ablation might accumulate electrical charge on the tips of nanotubes penetrated into cell's membrane. The charge might induce ionic exchanges into the cell and cause alterations in electrical states of the membrane. Transmembrane electrostatic/dynamic states would be strongly affected due to such exchanges. Our novel modality was that, the cells' vitality changes caused by charge inductions were electrically detected with the same nanotubes in the architecture of electrodes for impedance measurement. The responses of the sensor were confirmed by electron and florescent microscopy images as well as biological assays. In summation, our method provided an effective biochip for enhancing and detecting external EM stimulation on the cells useful for future diagnostic and therapeutic applications, such as wave-guided drug-resistance breakage.

  15. Fabrication and Optimization of Vertically Aligned ZnO Nanorod Array-Based UV Photodetectors via Selective Hydrothermal Synthesis.

    Science.gov (United States)

    Ko, Yeong Hwan; Nagaraju, Goli; Yu, Jae Su

    2015-12-01

    Vertically aligned ZnO nanorod array (NRA)-based ultraviolet (UV) photodetectors (PDs) were successfully fabricated and optimized via a facile hydrothermal process. Using a shadow mask technique, the thin ZnO seed layer was deposited between the patterned Au/Ti electrodes to bridge the electrodes. Thus, both the Au electrodes could be connected by the ZnO seed layer. As the sample was immersed into growth solution and heated at 90 °C, the ZnO NRAs were crystallized and vertically grown on the ZnO seed layer, thus creating a metal-semiconductor-metal PD structure. To investigate the size effect of ZnO NRAs on photocurrent, the PDs were readily prepared with different concentrations of growth solution. For the ZnO NRAs grown at 25 mM of concentration, the PD with 10 μm of channel width (i.e., gap distance between two electrodes) exhibited a high photocurrent of 1.91 × 10(-4) A at an applied bias of 10 V under 365 nm of UV light illumination. The PD was optimized by adjusting the channel width. For 15 μm of channel width, a relatively high photocurrent on-off ratio of 37.4 and good current transient characteristics were observed at the same applied bias. These results are expected to be useful for cost-effective and practical UV PD applications.

  16. Liquid crystal alignment in electro-responsive nanostructured thermosetting materials based on block copolymer dispersed liquid crystal

    Energy Technology Data Exchange (ETDEWEB)

    Tercjak, A; Garcia, I; Mondragon, I [Materials-Technologies Group, Departamento IngenierIa Quimica y M Ambiente, Escuela Politecnica, Universidad PaIs Vasco/Euskal Herriko Unibertsitatea, Plaza Europa 1, E-20018 Donostia-San Sebastian (Spain)], E-mail: scptesza@sc.ehu.es, E-mail: inaki.mondragon@ehu.es

    2008-07-09

    Novel well-defined nanostructured thermosetting systems were prepared by modification of a diglicydylether of bisphenol-A epoxy resin (DGEBA) with 10 or 15 wt% amphiphilic poly(styrene-b-ethylene oxide) block copolymer (PSEO) and 30 or 40 wt% low molecular weight liquid crystal 4'-(hexyl)-4-biphenyl-carbonitrile (HBC) using m-xylylenediamine (MXDA) as a curing agent. The competition between well-defined nanostructured materials and the ability for alignment of the liquid crystal phase in the materials obtained has been studied by atomic and electrostatic force microscopy, AFM and EFM, respectively. Based on our knowledge, this is the first time that addition of an adequate amount (10 wt%) of a block copolymer to 40 wt% HBC-(DGEBA/MXDA) leads to a well-organized nanostructured thermosetting system (between a hexagonal and worm-like ordered structure), which is also electro-responsive with high rate contrast. This behavior was confirmed using electrostatic force microscopy (EFM), by means of the response of the HBC liquid crystal phase to the voltage applied to the EFM tip. In contrast, though materials containing 15 wt% PSEO and 30 wt% HBC also form a well-defined nanostructured thermosetting system, they do not show such a high contrast between the uncharged and charged surface.

  17. Liquid crystal alignment in electro-responsive nanostructured thermosetting materials based on block copolymer dispersed liquid crystal

    Science.gov (United States)

    Tercjak, A.; Garcia, I.; Mondragon, I.

    2008-07-01

    Novel well-defined nanostructured thermosetting systems were prepared by modification of a diglicydylether of bisphenol-A epoxy resin (DGEBA) with 10 or 15 wt% amphiphilic poly(styrene-b-ethylene oxide) block copolymer (PSEO) and 30 or 40 wt% low molecular weight liquid crystal 4'-(hexyl)-4-biphenyl-carbonitrile (HBC) using m-xylylenediamine (MXDA) as a curing agent. The competition between well-defined nanostructured materials and the ability for alignment of the liquid crystal phase in the materials obtained has been studied by atomic and electrostatic force microscopy, AFM and EFM, respectively. Based on our knowledge, this is the first time that addition of an adequate amount (10 wt%) of a block copolymer to 40 wt% HBC-(DGEBA/MXDA) leads to a well-organized nanostructured thermosetting system (between a hexagonal and worm-like ordered structure), which is also electro-responsive with high rate contrast. This behavior was confirmed using electrostatic force microscopy (EFM), by means of the response of the HBC liquid crystal phase to the voltage applied to the EFM tip. In contrast, though materials containing 15 wt% PSEO and 30 wt% HBC also form a well-defined nanostructured thermosetting system, they do not show such a high contrast between the uncharged and charged surface.

  18. Prediction of Antimicrobial Peptides Based on Sequence Alignment and Support Vector Machine-Pairwise Algorithm Utilizing LZ-Complexity

    Directory of Open Access Journals (Sweden)

    Xin Yi Ng

    2015-01-01

    Full Text Available This study concerns an attempt to establish a new method for predicting antimicrobial peptides (AMPs which are important to the immune system. Recently, researchers are interested in designing alternative drugs based on AMPs because they have found that a large number of bacterial strains have become resistant to available antibiotics. However, researchers have encountered obstacles in the AMPs designing process as experiments to extract AMPs from protein sequences are costly and require a long set-up time. Therefore, a computational tool for AMPs prediction is needed to resolve this problem. In this study, an integrated algorithm is newly introduced to predict AMPs by integrating sequence alignment and support vector machine- (SVM- LZ complexity pairwise algorithm. It was observed that, when all sequences in the training set are used, the sensitivity of the proposed algorithm is 95.28% in jackknife test and 87.59% in independent test, while the sensitivity obtained for jackknife test and independent test is 88.74% and 78.70%, respectively, when only the sequences that has less than 70% similarity are used. Applying the proposed algorithm may allow researchers to effectively predict AMPs from unknown protein peptide sequences with higher sensitivity.

  19. Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.

    Science.gov (United States)

    Aniba, Mohamed Radhouene; Siguenza, Sophie; Friedrich, Anne; Plewniak, Frédéric; Poch, Olivier; Marchler-Bauer, Aron; Thompson, Julie Dawn

    2009-01-01

    The traditional approach to bioinformatics analyses relies on independent task-specific services and applications, using different input and output formats, often idiosyncratic, and frequently not designed to inter-operate. In general, such analyses were performed by experts who manually verified the results obtained at each step in the process. Today, the amount of bioinformatics information continuously being produced means that handling the various applications used to study this information presents a major data management and analysis challenge to researchers. It is now impossible to manually analyse all this information and new approaches are needed that are capable of processing the large-scale heterogeneous data in order to extract the pertinent information. We review the recent use of integrated expert systems aimed at providing more efficient knowledge extraction for bioinformatics research. A general methodology for building knowledge-based expert systems is described, focusing on the unstructured information management architecture, UIMA, which provides facilities for both data and process management. A case study involving a multiple alignment expert system prototype called AlexSys is also presented.

  20. Fabrication and Optimization of Vertically Aligned ZnO Nanorod Array-Based UV Photodetectors via Selective Hydrothermal Synthesis

    Science.gov (United States)

    Ko, Yeong Hwan; Nagaraju, Goli; Yu, Jae Su

    2015-08-01

    Vertically aligned ZnO nanorod array (NRA)-based ultraviolet (UV) photodetectors (PDs) were successfully fabricated and optimized via a facile hydrothermal process. Using a shadow mask technique, the thin ZnO seed layer was deposited between the patterned Au/Ti electrodes to bridge the electrodes. Thus, both the Au electrodes could be connected by the ZnO seed layer. As the sample was immersed into growth solution and heated at 90 °C, the ZnO NRAs were crystallized and vertically grown on the ZnO seed layer, thus creating a metal-semiconductor-metal PD structure. To investigate the size effect of ZnO NRAs on photocurrent, the PDs were readily prepared with different concentrations of growth solution. For the ZnO NRAs grown at 25 mM of concentration, the PD with 10 μm of channel width (i.e., gap distance between two electrodes) exhibited a high photocurrent of 1.91 × 10-4 A at an applied bias of 10 V under 365 nm of UV light illumination. The PD was optimized by adjusting the channel width. For 15 μm of channel width, a relatively high photocurrent on-off ratio of 37.4 and good current transient characteristics were observed at the same applied bias. These results are expected to be useful for cost-effective and practical UV PD applications.

  1. CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy

    Directory of Open Access Journals (Sweden)

    Guanghong Zuo

    2015-10-01

    Full Text Available A faithful phylogeny and an objective taxonomy for prokaryotes should agree with each other and ultimately follow the genome data. With the number of sequenced genomes reaching tens of thousands, both tree inference and detailed comparison with taxonomy are great challenges. We now provide one solution in the latest Release 3.0 of the alignment-free and whole-genome-based web server CVTree3. The server resides in a cluster of 64 cores and is equipped with an interactive, collapsible, and expandable tree display. It is capable of comparing the tree branching order with prokaryotic classification at all taxonomic ranks from domains down to species and strains. CVTree3 allows for inquiry by taxon names and trial on lineage modifications. In addition, it reports a summary of monophyletic and non-monophyletic taxa at all ranks as well as produces print-quality subtree figures. After giving an overview of retrospective verification of the CVTree approach, the power of the new server is described for the mega-classification of prokaryotes and determination of taxonomic placement of some newly-sequenced genomes. A few discrepancies between CVTree and 16S rRNA analyses are also summarized with regard to possible taxonomic revisions. CVTree3 is freely accessible to all users at http://tlife.fudan.edu.cn/cvtree3/ without login requirements.

  2. Acoustic Prism for Continuous Beam Steering Based on Piezoelectric Metamaterial

    CERN Document Server

    Xu, Jiawen

    2016-01-01

    This paper investigates an acoustic prism for continuous acoustic beam steering by a simple frequency sweep. This idea takes advantages of acoustic wave velocity shifting in metamaterials in the vicinity of local resonance. We apply this concept into the piezoelectric metamaterial consisting of host medium and piezoelectric LC shunt. Theoretical modeling and FEM simulations are carried out. It is shown that the phase velocity of acoustic wave changes dramatically in the vicinity of local resonance. The directions of acoustic wave can be adjusted continuously between 2 to 16 degrees by a simple sweep of the excitation frequency. Such an electro-mechanical coupling system has a feature of adjusting local resonance without altering the mechanical part of the system.

  3. The Case for Muon-based Neutrino Beams

    Energy Technology Data Exchange (ETDEWEB)

    Huber, Patrick [Virginia Tech.; Bross, Alan [Fermilab; Palmer, Mark [Fermilab

    2014-11-03

    For the foreseeable future, high energy physics accelerator capabilities in the US will be deployed to study the physics of the neutrino sector. In this context, it is useful to explore the sensitivities and limiting systematic effects of the planned neutrino oscillation program, so that we can evaluate the issues that must be addressed in order to ensure the success of these efforts. It is only in this way that we will ultimately be able to elucidate the fundamental physics processes involved. We conclude that success can only be guaranteed by, at some point in the future, being able to deploy muon accelerator capabilities. Such capabilities provide the only route to precision neutrino beams with which to study and mitigate, at the sub-percent level, the limiting systematic issues of future oscillation measurements. Thus this analysis argues strongly for maintaining a viable accelerator research program towards future muon accelerator capabilities.

  4. Magnetic fields and the technology challenges they pose to beam-based equipment: a semiconductor perspective

    Science.gov (United States)

    Esqueda, Vincent; Montoya, Julian A.

    2005-08-01

    As semiconductor devices shrink in size to accommodate faster processing speeds, the need for higher resolution beam-based metrology equipment and beam-based writing equipment will increase. The electron and ion beams used within these types of equipment are sensitive to very small variations in magnetic force applied to the beam. This phenomenon results from changes in Alternating Current (AC) and Direct Current (DC) magnetic flux density at the beam column which causes deflections of the beam that can impact equipment performance. Currently the most sensitive beam-based microscope manufacturers require an ambient magnetic field environment that does not have variations that exceed 0.2 milli-Gauss (mG). Studies have shown that such low levels of magnetic flux density can be extremely difficult to achieve. As examples, scissor lifts, vehicles, metal chairs, and doors moving in time and space under typical use conditions can create distortions in the Earth's magnetic field that can exceed 0.2 mG at the beam column. In addition it is known that changes in the Earth's magnetic field caused by solar flares, earthquakes, and variations in the Earth's core itself all cause changes in the magnetic field that can exceed 0.2 mG. This paper will provide the reader with the basic understanding of the emerging problem, will discuss the environmental and facility level challenges associated in meeting such stringent magnetic field environments, will discuss some of the mitigation techniques used to address the problem, and will close by discussing needs for further research in this area to assure semiconductor and nanotechnology industries are pre-positioned for even more stringent magnetic field environmental requirements.

  5. Shift dynamics of capillary self-alignment

    NARCIS (Netherlands)

    Arutinov, G.; Mastrangeli, M.; Smits, E.C.P.; Heck, G.V.; Schoo, H.F.M.; Toonder, J.J.M. den; Dietzel, A.H.

    2014-01-01

    This paper describes the dynamics of capillary self-alignment of components with initial shift offsets from matching receptor sites. The analysis of the full uniaxial self-alignment dynamics of foil-based mesoscopic dies from pre-alignment to final settling evidenced three distinct, sequential regim

  6. Energy harvesting from vertically aligned PZT nanowire arrays

    Science.gov (United States)

    Malakooti, Mohammad H.; Zhou, Zhi; Sodano, Henry A.

    2016-04-01

    In this paper, a nanostructured piezoelectric beam is fabricated using vertically aligned lead zirconate titanate (PZT) nanowire arrays and its capability of continuous power generation is demonstrated through direct vibration tests. The lead zirconate titanate nanowires are grown on a PZT thin film coated titanium foil using a hydrothermal reaction. The PZT thin film serves as a nucleation site while the titanium foil is used as the bottom electrode. Electromechanical frequency response function (FRF) analysis is performed to evaluate the power harvesting efficiency of the fabricated device. Furthermore, the feasibility of the continuous power generation using the nanostructured beam is demonstrated through measuring output voltage from PZT nanowires when beam is subjected to a sinusoidal base excitation. The effect of tip mass on the voltage generation of the PZT nanowire arrays is evaluated experimentally. The final results show the great potential of synthesized piezoelectric nanowire arrays in a wide range of applications, specifically power generation at nanoscale.

  7. Studying thin film damping in a micro-beam resonator based on non-classical theories

    Science.gov (United States)

    Ghanbari, Mina; Hossainpour, Siamak; Rezazadeh, Ghader

    2016-06-01

    In this paper, a mathematical model is presented for studying thin film damping of the surrounding fluid in an in-plane oscillating micro-beam resonator. The proposed model for this study is made up of a clamped-clamped micro-beam bound between two fixed layers. The micro-gap between the micro-beam and fixed layers is filled with air. As classical theories are not properly capable of predicting the size dependence behaviors of the micro-beam, and also behavior of micro-scale fluid media, hence in the presented model, equation of motion governing longitudinal displacement of the micro-beam has been extracted based on non-local elasticity theory. Furthermore, the fluid field has been modeled based on micro-polar theory. These coupled equations have been simplified using Newton-Laplace and continuity equations. After transforming to non-dimensional form and linearizing, the equations have been discretized and solved simultaneously using a Galerkin-based reduced order model. Considering slip boundary conditions and applying a complex frequency approach, the equivalent damping ratio and quality factor of the micro-beam resonator have been obtained. The obtained values for the quality factor have been compared to those based on classical theories. We have shown that applying non-classical theories underestimate the values of the quality factor obtained based on classical theories. The effects of geometrical parameters of the micro-beam and micro-scale fluid field on the quality factor of the resonator have also been investigated.

  8. Studying thin film damping in a micro-beam resonator based on non-classical theories

    Institute of Scientific and Technical Information of China (English)

    Mina Ghanbari; Siamak Hossainpour; Ghader Rezazadeh

    2016-01-01

    In this paper, a mathematical model is presented for studying thin film damping of the surrounding fluid in an in-plane oscillating micro-beam resonator. The proposed model for this study is made up of a clamped-clamped micro-beam bound between two fixed layers. The micro-gap between the micro-beam and fixed layers is filled with air. As classical theories are not properly capable of pre-dicting the size dependence behaviors of the micro-beam, and also behavior of micro-scale fluid media, hence in the presented model, equation of motion governing longitudinal displacement of the micro-beam has been extracted based on non-local elasticity theory. Furthermore, the fluid field has been modeled based on micro-polar theory. These coupled equations have been simplified using Newton-Laplace and continuity equations. After transforming to non-dimensional form and linearizing, the equations have been discretized and solved simultaneously using a Galerkin-based reduced order model. Considering slip boundary conditions and applying a complex frequency approach, the equivalent damping ratio and quality factor of the micro-beam resonator have been obtained. The obtained values for the quality factor have been compared to those based on classical theories. We have shown that applying non-classical theories underestimate the values of the quality factor obtained based on classical theo-ries. The effects of geometrical parameters of the micro-beam and micro-scale fluid field on the quality factor of the res-onator have also been investigated.

  9. A Monte Carlo-based treatment-planning tool for ion beam therapy

    CERN Document Server

    Böhlen, T T; Dosanjh, M; Ferrari, A; Haberer, T; Parodi, K; Patera, V; Mairan, A

    2013-01-01

    Ion beam therapy, as an emerging radiation therapy modality, requires continuous efforts to develop and improve tools for patient treatment planning (TP) and research applications. Dose and fluence computation algorithms using the Monte Carlo (MC) technique have served for decades as reference tools for accurate dose computations for radiotherapy. In this work, a novel MC-based treatment-planning (MCTP) tool for ion beam therapy using the pencil beam scanning technique is presented. It allows single-field and simultaneous multiple-fields optimization for realistic patient treatment conditions and for dosimetric quality assurance for irradiation conditions at state-of-the-art ion beam therapy facilities. It employs iterative procedures that allow for the optimization of absorbed dose and relative biological effectiveness (RBE)-weighted dose using radiobiological input tables generated by external RBE models. Using a re-implementation of the local effect model (LEM), theMCTP tool is able to perform TP studies u...

  10. A DSP-Based Beam Current Monitoring System for Machine Protection Using Adaptive Filtering

    Energy Technology Data Exchange (ETDEWEB)

    J. Musson; H. Dong; R. Flood; C. Hovater; J. Hereford

    2001-06-01

    The CEBAF accelerator at Jefferson Lab is currently using an analog beam current monitoring (BCM) system for its machine protection system (MPS), which has a loss accuracy of 2 micro-amps. Recent burn-through simulations predict catastrophic beam line component failures below 1 micro-amp of loss, resulting in a blind spot for the MPS. Revised MPS requirements target an ultimate beam loss accuracy of 250 nA. A new beam current monitoring system has been developed which utilizes modern digital receiver technology and digital signal processing concepts. The receiver employs a direct-digital down converter integrated circuit, mated with a Jefferson Lab digital signal processor VME card. Adaptive filtering is used to take advantage of current-dependent burn-through rates. Benefits of such a system include elimination of DC offsets, generic algorithm development, extensive filter options, and interfaces to UNIX-based control systems.

  11. Super-resolution microscopy based on fluorescence emission difference of cylindrical vector beams

    Science.gov (United States)

    Rong, Zihao; Kuang, Cuifang; Fang, Yue; Zhao, Guangyuan; Xu, Yingke; Liu, Xu

    2015-11-01

    We propose a novel fluorescence emission difference microscopy (FED) system based on focusing cylindrical vector beams. In conventional FED, a Gaussian beam and a 0-2π vortex phase plate are used to generate solid and hollow spots. We focus radially polarized and azimuthally polarized cylindrical vector beams to obtain an expanded solid spot and a shrunken hollow spot, taking advantage of the optical properties of cylindrical vector beams to improve the conventional FED performance. Our novel method enhances FED performance because the hollow spot size determines the FED resolution and an expanded solid spot effectively reduces negative side-lobe emergence during image processing. We demonstrate improved performance theoretically and experimentally using an in-house built FED. Our FED achieved resolution of less than λ/4 in test images of 100 nm nanoparticles, better than the confocal image resolution by a factor of approximately 1/3. We also discuss detailed simulation analyses and FED imaging of biological cells.

  12. Investigation on gradient material fabrication with electron beam melting based on scanning track control

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A new electron beam control system was developed in a general vacuum electron beam machine by assembling with industrial control computer, programmable logic control (PLC), deflection coil, data acquisition card, power amplifier, etc. In this control system, scanning track and energy distribution of electron beam could be edited off-line, real-time adjusted and controlled on-line. Ti-Mo gradient material (GM) with high temperature resistant was fabricated using the technology of electron beam melting. The melting processes include three steps, such as preheating, melting, and homogenizing. The results show that the GM prepared by melting technology has fine appearance, and it has good integrated interface with the Ti alloy. Mo and Ti elements are gradually distributed in the interface of the gradient material. The microstructure close to the Ti alloy base metal is α+β basket-waver grain, and the microstructure close to the GM is a single phase of β solid solution.

  13. Recent advances in automatic alignment system for the National Iginition Facility

    Energy Technology Data Exchange (ETDEWEB)

    Wilhelmsen, K; Awwal, A; Kalantar, D; Leach, R; Lowe-Webb, R; McGuigan, D; Kamm, V

    2010-12-08

    The automatic alignment system for the National Ignition Facility (NIF) is a large-scale parallel system that directs all 192 laser beams along the 300-m optical path to a 50-micron focus at target chamber in less than 50 minutes. The system automatically commands 9,000 stepping motors to adjust mirrors and other optics based upon images acquired from high-resolution digital cameras viewing beams at various locations. Forty-five control loops per beamline request image processing services running on a LINUX cluster to analyze these images of the beams and references, and automaticallys teer the beams toward the target. This paper discusses the upgrades to the NIF automatic alignment system to handle new alignment needs and evolving requirements as related to various types of experiments performed. As NIF becomes a continuously-operated system and more experiments are performed, performance monitoring is increasingly important for maintenance and commissioning work. Data, collected during operations, is analyzed for tuning of the laser and targeting maintenance work. handling evolving alignment and maintenance needs is expected for the planned 30-year operational life of NIF.

  14. Interlaminar Stresses by Refined Beam Theories and the Sinc Method Based on Interpolation of Highest Derivative

    Science.gov (United States)

    Slemp, Wesley C. H.; Kapania, Rakesh K.; Tessler, Alexander

    2010-01-01

    Computation of interlaminar stresses from the higher-order shear and normal deformable beam theory and the refined zigzag theory was performed using the Sinc method based on Interpolation of Highest Derivative. The Sinc method based on Interpolation of Highest Derivative was proposed as an efficient method for determining through-the-thickness variations of interlaminar stresses from one- and two-dimensional analysis by integration of the equilibrium equations of three-dimensional elasticity. However, the use of traditional equivalent single layer theories often results in inaccuracies near the boundaries and when the lamina have extremely large differences in material properties. Interlaminar stresses in symmetric cross-ply laminated beams were obtained by solving the higher-order shear and normal deformable beam theory and the refined zigzag theory with the Sinc method based on Interpolation of Highest Derivative. Interlaminar stresses and bending stresses from the present approach were compared with a detailed finite element solution obtained by ABAQUS/Standard. The results illustrate the ease with which the Sinc method based on Interpolation of Highest Derivative can be used to obtain the through-the-thickness distributions of interlaminar stresses from the beam theories. Moreover, the results indicate that the refined zigzag theory is a substantial improvement over the Timoshenko beam theory due to the piecewise continuous displacement field which more accurately represents interlaminar discontinuities in the strain field. The higher-order shear and normal deformable beam theory more accurately captures the interlaminar stresses at the ends of the beam because it allows transverse normal strain. However, the continuous nature of the displacement field requires a large number of monomial terms before the interlaminar stresses are computed as accurately as the refined zigzag theory.

  15. High-throughput and high-yield fabrication of uniaxially-aligned chitosan-based nanofibers by centrifugal electrospinning.

    Science.gov (United States)

    Erickson, Ariane E; Edmondson, Dennis; Chang, Fei-Chien; Wood, Dave; Gong, Alex; Levengood, Sheeny Lan; Zhang, Miqin

    2015-12-10

    The inability to produce large quantities of nanofibers has been a primary obstacle in advancement and commercialization of electrospinning technologies, especially when aligned nanofibers are desired. Here, we present a high-throughput centrifugal electrospinning (HTP-CES) system capable of producing a large number of highly-aligned nanofiber samples with high-yield and tunable diameters. The versatility of the design was revealed when bead-less nanofibers were produced from copolymer chitosan/polycaprolactone (C-PCL) solutions despite variations in polymer blend composition or spinneret needle gauge. Compared to conventional electrospinning techniques, fibers spun with the HTP-CES not only exhibited superior alignment, but also better diameter uniformity. Nanofiber alignment was quantified using Fast Fourier Transform (FFT) analysis. In addition, a concave correlation between the needle diameter and resultant fiber diameter was identified. This system can be easily scaled up for industrial production of highly-aligned nanofibers with tunable diameters that can potentially meet the requirements for various engineering and biomedical applications.

  16. Physician-Hospital Alignment in Orthopedic Surgery.

    Science.gov (United States)

    Bushnell, Brandon D

    2015-09-01

    The concept of "alignment" between physicians and hospitals is a popular buzzword in the age of health care reform. Despite their often tumultuous histories, physicians and hospitals find themselves under increasing pressures to work together toward common goals. However, effective alignment is more than just simple cooperation between parties. The process of achieving alignment does not have simple, universal steps. Alignment will differ based on individual situational factors and the type of specialty involved. Ultimately, however, there are principles that underlie the concept of alignment and should be a part of any physician-hospital alignment efforts. In orthopedic surgery, alignment involves the clinical, administrative, financial, and even personal aspects of a surgeon's practice. It must be based on the principles of financial interest, clinical authority, administrative participation, transparency, focus on the patient, and mutual necessity. Alignment can take on various forms as well, with popular models consisting of shared governance and comanagement, gainsharing, bundled payments, accountable care organizations, and other methods. As regulatory and financial pressures continue to motivate physicians and hospitals to develop alignment relationships, new and innovative methods of alignment will also appear. Existing models will mature and evolve, with individual variability based on local factors. However, certain trends seem to be appearing as time progresses and alignment relationships deepen, including regional and national collaboration, population management, and changes in the legal system. This article explores the history, principles, and specific methods of physician-hospital alignment and its critical importance for the future of health care delivery.

  17. Evaluation of web-based instruction for anatomical interpretation in maxillofacial cone beam computed tomography

    NARCIS (Netherlands)

    Al-Rawi, W.T.; Jacobs, R.; Hassan, B.A.; Sanderink, G.; Scarfe, W.C.

    2007-01-01

    Objectives: To evaluate the effectiveness of a web-based instruction in the interpretation of anatomy in images acquired with maxillofacial cone beam CT (CBCT). Methods: An interactive web-based education course for the interpretation of craniofacial CBCT images was recently developed at our institu

  18. Aligning component upgrades

    Directory of Open Access Journals (Sweden)

    Roberto Di Cosmo

    2011-08-01

    Full Text Available Modern software systems, like GNU/Linux distributions or Eclipse-based development environment, are often deployed by selecting components out of large component repositories. Maintaining such software systems by performing component upgrades is a complex task, and the users need to have an expressive preferences language at their disposal to specify the kind of upgrades they are interested in. Recent research has shown that it is possible to develop solvers that handle preferences expressed as a combination of a few basic criteria used in the MISC competition, ranging from the number of new components to the freshness of the final configuration. In this work we introduce a set of new criteria that allow the users to specify their preferences for solutions with components aligned to the same upstream sources, provide an efficient encoding and report on the experimental results that prove that optimising these alignment criteria is a tractable problem in practice.

  19. Inflation by alignment

    Energy Technology Data Exchange (ETDEWEB)

    Burgess, C.P. [PH -TH Division, CERN,CH-1211, Genève 23 (Switzerland); Department of Physics & Astronomy, McMaster University,1280 Main Street West, Hamilton ON (Canada); Perimeter Institute for Theoretical Physics,31 Caroline Street North, Waterloo ON (Canada); Roest, Diederik [Van Swinderen Institute for Particle Physics and Gravity, University of Groningen,Nijenborgh 4, 9747 AG Groningen (Netherlands)

    2015-06-08

    Pseudo-Goldstone bosons (pGBs) can provide technically natural inflatons, as has been comparatively well-explored in the simplest axion examples. Although inflationary success requires trans-Planckian decay constants, f≳M{sub p}, several mechanisms have been proposed to obtain this, relying on (mis-)alignments between potential and kinetic energies in multiple-field models. We extend these mechanisms to a broader class of inflationary models, including in particular the exponential potentials that arise for pGB potentials based on noncompact groups (and so which might apply to moduli in an extra-dimensional setting). The resulting potentials provide natural large-field inflationary models and can predict a larger primordial tensor signal than is true for simpler single-field versions of these models. In so doing we provide a unified treatment of several alignment mechanisms, showing how each emerges as a limit of the more general setup.

  20. The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies.

    Directory of Open Access Journals (Sweden)

    Patrick D Schloss

    Full Text Available Pyrosequencing of PCR-amplified fragments that target variable regions within the 16S rRNA gene has quickly become a powerful method for analyzing the membership and structure of microbial communities. This approach has revealed and introduced questions that were not fully appreciated by those carrying out traditional Sanger sequencing-based methods. These include the effects of alignment quality, the best method of calculating pairwise genetic distances for 16S rRNA genes, whether it is appropriate to filter variable regions, and how the choice of variable region relates to the genetic diversity observed in full-length sequences. I used a diverse collection of 13,501 high-quality full-length sequences to assess each of these questions. First, alignment quality had a significant impact on distance values and downstream analyses. Specifically, the greengenes alignment, which does a poor job of aligning variable regions, predicted higher genetic diversity, richness, and phylogenetic diversity than the SILVA and RDP-based alignments. Second, the effect of different gap treatments in determining pairwise genetic distances was strongly affected by the variation in sequence length for a region; however, the effect of different calculation methods was subtle when determining the sample's richness or phylogenetic diversity for a region. Third, applying a sequence mask to remove variable positions had a profound impact on genetic distances by muting the observed richness and phylogenetic diversity. Finally, the genetic distances calculated for each of the variable regions did a poor job of correlating with the full-length gene. Thus, while it is tempting to apply traditional cutoff levels derived for full-length sequences to these shorter sequences, it is not advisable. Analysis of beta-diversity metrics showed that each of these factors can have a significant impact on the comparison of community membership and structure. Taken together, these results

  1. Investigation based on nano-electromechanical system double Si3N4 resonant beam pressure sensor.

    Science.gov (United States)

    Yang, Chuan; Guo, Can; Yuan, Xiaowei

    2011-12-01

    This paper presents a type of NEMS (Nano-Electromechanical System) double Si3N4 resonant beams pressure sensor. The mathematical models are established in allusion to the Si3N4 resonant beams and pressure sensitive diaphragm. The distribution state of stress has been analyzed theoretically based on the mathematical model of pressure sensitive diaphragm; from the analysis result, the position of the Si3N4 resonant beams above the pressure sensitive diaphragm was optimized and then the dominance observed after the double resonant beams are adopted is illustrated. From the analysis result, the position of the Si3N4 resonant beams above the pressure sensitive diaphragm is optimized, illustrating advantages in the adoption of double resonant beams. The capability of the optimized sensor was generally analyzed using the ANSYS software of finite element analysis. The range of measured pressure is 0-400 Kpa, the coefficient of linearity correlation is 0.99346, and the sensitivity of the sensor is 498.24 Hz/Kpa, higher than the traditional sensors. Finally the processing techniques of the sensor chip have been designed with sample being successfully processed.

  2. Beam hardening correction for interior tomography based on exponential formed model and radon inversion transform

    Science.gov (United States)

    Chen, Siyu; Zhang, Hanming; Li, Lei; Xi, Xiaoqi; Han, Yu; Yan, Bin

    2016-10-01

    X-ray computed tomography (CT) has been extensively applied in industrial non-destructive testing (NDT). However, in practical applications, the X-ray beam polychromaticity often results in beam hardening problems for image reconstruction. The beam hardening artifacts, which manifested as cupping, streaks and flares, not only debase the image quality, but also disturb the subsequent analyses. Unfortunately, conventional CT scanning requires that the scanned object is completely covered by the field of view (FOV), the state-of-art beam hardening correction methods only consider the ideal scanning configuration, and often suffer problems for interior tomography due to the projection truncation. Aiming at this problem, this paper proposed a beam hardening correction method based on radon inversion transform for interior tomography. Experimental results show that, compared to the conventional correction algorithms, the proposed approach has achieved excellent performance in both beam hardening artifacts reduction and truncation artifacts suppression. Therefore, the presented method has vitally theoretic and practicable meaning in artifacts correction of industrial CT.

  3. A ground-based measurement of the relativistic beaming effect in a detached double WD binary

    CERN Document Server

    Shporer, Avi; Steinfadt, Justin D R; Bildsten, Lars; Howell, Steve B; Mazeh, Tsevi

    2010-01-01

    We report on the first ground-based measurement of the relativistic beaming effect (aka Doppler boosting). We observed the beaming effect in the detached, non-interacting eclipsing double white dwarf (WD) binary NLTT 11748. Our observations were motivated by the system's high mass ratio and low luminosity ratio, leading to a large beaming-induced variability amplitude at the orbital period of 5.6 hr. We observed the system during 3 nights at the 2.0m Faulkes Telescope North with the SDSS-g' filter, and fitted the data simultaneously for the beaming, ellipsoidal and reflection effects. Our fitted relative beaming amplitude is (3.0 +/- 0.4) x 10^(-3), consistent with the expected amplitude from a blackbody spectrum given the photometric primary radial velocity amplitude and effective temperature. This result is a first step in testing the relation between the photometric beaming amplitude and the spectroscopic radial velocity amplitude in NLTT 11748 and similar systems. We did not identify any variability due t...

  4. Hybrid onboard and ground based digital channelizer beam-forming for SATCOM interference mitigation and protection

    Science.gov (United States)

    Xiong, Wenhao; Wang, Gang; Tian, Xin; Pham, Khanh; Blasch, Erik; Chen, Genshe

    2016-05-01

    In this work, we propose a novel beam-forming power allocation method for a satellite communication (SATCOM) multiple-input multiple-output (MIMO) system to mitigate the co-channel interference (CCI) as well as limiting the signal leakage to the adversary users. In SATCOM systems, the beam-forming technique is a conventional way of avoiding interference, controlling the antenna beams, and mitigating undesired signals. We propose to use an advanced beam-forming technique which considers the number of independent channels used and transmitting power deployed to reduce and mitigate the unintentional interference effect. With certain quality of service (QoS) for the SATCOM system, independent channels components will be selected. It is desired to use less and stronger channel components when possible. On the other hand, considering that SATCOM systems often face the problem that adversary receiver detects the signal, a proposed power allocation method can efficiently reduce the received power at the adversary receiver. To reduce the computational burden on the transponder in order to minimize the size, mass, power consumption and delay for the satellite, we apply a hybrid onboard and ground based beam-forming design to distribute the calculation between the transponder and ground terminals. Also the digital channelizer beam-forming (DCB) technique is employed to achieve dynamic spatial control.

  5. Beam hardening correction using iterative total variation (ITV)-based algorithm in CBCT reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Seo, Chang-Woo; Cha, Bo Kyung; Jeon, Sungchae; Huh, Young [Converged Medical Device Research Center, Advanced Medical Device Research Division, KERI, Gyeonggido 426-910 (Korea, Republic of)

    2015-07-01

    Recently, beam hardening reduction is required to produce high-quality reconstructions of X-ray cone-beam computed tomography (CBCT) system for medical applications. This paper introduces the iterative total variation (ITV) for filtered-backprojection suffering from the serious beam hardening problems. Feldkamp, Davis, and Kress (FDK) reconstruction algorithm for CBCT system is widely used reconstruction technique. FDK reconstruction algorithm could be realized by generating the weighted projection data, filtering the projection images, and back-projecting the filtered projection data into the volume. However, FDK algorithm suffers from the beam hardening artifacts by X-ray attenuation coefficients. Recently, total variation (TV) method for compressed sensing (CS) has been particularly useful in exploiting the prior knowledge of minimal variation in the X-ray attenuation characteristics across object or human body. But a practical implementation of this method still remains a challenge. The main problem is the iterative nature of solving the TV-based CS formulation, which generally requires multiple iterations of forward and backward projections of a large dataset in clinically or industrially feasible time frame. In this paper, we propose ITV method after FDK reconstruction for reducing the beam hardening artifacts. The beam hardening problems are reduced by the ITV method to promote sparsity inherent in the X-ray attenuation characteristics. (authors)

  6. Piezoelectric-based smart sensing system for I-beam structural health monitoring

    Science.gov (United States)

    Zhang, Chen; Zhang, Haifeng; Yu, Tzuyang; Wang, Xingwei

    2016-04-01

    In recent decades, the I-beam has become one of the most important engineering structural components being applied in areas such as mechanical, civil, and constructional engineering. To ensure safety and proper maintenance, an effective and accurate structural health monitoring method/system for I-beams is urgently needed. This paper proposes a smart sensing system for I-beam crack detection that is based on the energy diffusivity (attenuation) between two individual piezoelectric transducers (PZTs). Sensor (one of the PZTs) responses are analyzed and applied to characterize the health status of the I-beam. Lab experiments are carried out for effective evaluation of this approach in structural health monitoring. The characteristics of crack distribution are studied by calculating and analyzing the energy diffusivity variation of the sensor responses to artificially cuttings to the I-beam. Moreover, instead of utilizing an actuator and a sensor, the system employs a couple of PZTs sensors, which offer the potential for in-field, in situ sensing with the sensor arrays. This smart sensing system can be applied in railway, metro, and iron-steel structures for I-beam health monitoring applications.

  7. Dosimetric study of RapidArc plans with flattened beam (FB and flattening filter-free (FFF beam for localized prostate cancer based on physical indices

    Directory of Open Access Journals (Sweden)

    Birendra Kumar Rout

    2014-12-01

    Full Text Available Purpose: To identify the continual diversity between flattening photon beam (FB and Flattening Filter Free (FFF photon beams for localized prostate cancer; and to determine potential benefits and drawbacks of using unflattened beam for this type of treatment.Methods: Eight prostate cases including seminal vesicles selected for this study. The primary planning target volume (PTVP and boost planning target volume (PTVB were contoured. The total prescription dose was 78 Gy (56 Gy to PTVP and an additional 22 Gy to PTVB. For all cases, treatment plans using 6MV with FB and FFF beams with identical dose-volume constraints, arc angles and number of arcs were developed. The dose volume histograms for both techniques were compared for primary target volume and critical structures.Results: A low Sigma index (FFF: 1.65 + 0.361; FB: 1.725 + 0.39 indicating improved dose homogeneity in FFF beam. Conformity index (FFF: 0.994 + 0.01; FB: 0.993 + 0.01 is comparable for both techniques. Minimal difference of Organ at risk mean dose was observed. Normal tissue integral dose in FB plan resulted 1.5% lower than FFF plan. All the plans displayed significant increase (1.18 times for PTVP and 1.11 for PTBB in the average number of necessary MU with FFF beam.Conclusion: Diversity between FB and FFF beam plans were found. FFF beam accelerator has been utilized to develop clinically acceptable Rapid Arc treatment plans for prostate cancer with 6 MV.---------------------------------Cite this article as: Rout BK, Muralidhar KR, Ali M, Shekar MC, Kumar A. Dosimetric study of RapidArc plans with flattened beam (FB and flattening filter-free (FFF beam for localized prostate cancer based on physical indices. Int J Cancer Ther Oncol 2014; 2(4:02046.  DOI: 10.14319/ijcto.0204.6

  8. How well does consumer-based brand equity align with sales-based brand equity and marketing mix response?

    NARCIS (Netherlands)

    Datta, Hannes; Ailawadi, Kusum L.; van Heerde, H.J.

    2016-01-01

    Brand equity is the differential preference and response to marketing effort that a product obtains because of its brand identification. Brand equity can be measured based on either consumer perceptions or on sales. Consumer-based brand equity (CBBE) measures what consumers think and feel about the

  9. The study of laser beam riding guided system based on 980nm diode laser

    Science.gov (United States)

    Qu, Zhou; Xu, Haifeng; Sui, Xin; Yang, Kun

    2015-10-01

    With the development of science and technology, precision-strike weapons has been considered to be important for winning victory in military field. Laser guidance is a major method to execute precision-strike in modern warfare. At present, the problems of primary stage of Laser guidance has been solved with endeavors of countries. Several technical aspects of laser-beam riding guided system have been mature, such as atmosphere penetration of laser beam, clutter inhibition on ground, laser irradiator, encoding and decoding of laser beam. Further, laser beam quality, equal output power and atmospheric transmission properties are qualified for warfare situation. Riding guidance instrument is a crucial element of Laser-beam riding guided system, and is also a vital element of airborne, vehicle-mounted and individual weapon. The optical system mainly consist of sighting module and laser-beam guided module. Photoelectric detector is the most important sensing device of seeker, and also the key to acquire the coordinate information of target space. Currently, in consideration of the 1.06 u m of wavelength applied in all the semi-active laser guided weapons systems, lithium drifting silicon photodiode which is sensitive to 1.06 u m of wavelength is used in photoelectric detector. Compared to Solid and gas laser, diode laser has many merits such as small volume, simple construction, light weight, long life, low lost and easy modulation. This article introduced the composition and operating principle of Laser-beam riding guided system based on 980 nm diode laser, and made a analysis of key technology; for instance, laser irradiator, modulating disk of component, laser zooming system. Through the use of laser diode, Laser-beam riding guided system is likely to have smaller shape and very light.

  10. Design Optimization of PZT-Based Piezoelectric Cantilever Beam by Using Computational Experiments

    Science.gov (United States)

    Kim, Jihoon; Park, Sanghyun; Lim, Woochul; Jang, Junyong; Lee, Tae Hee; Hong, Seong Kwang; Song, Yewon; Sung, Tae Hyun

    2016-08-01

    Piezoelectric energy harvesting is gaining huge research interest since it provides high power density and has real-life applicability. However, investigative research for the mechanical-electrical coupling phenomenon remains challenging. Many researchers depend on physical experiments to choose devices with the best performance which meet design objectives through case analysis; this involves high design costs. This study aims to develop a practical model using computer simulations and to propose an optimized design for a lead zirconate titanate (PZT)-based piezoelectric cantilever beam which is widely used in energy harvesting. In this study, the commercial finite element (FE) software is used to predict the voltage generated from vibrations of the PZT-based piezoelectric cantilever beam. Because the initial FE model differs from physical experiments, the model is calibrated by multi-objective optimization to increase the accuracy of the predictions. We collect data from physical experiments using the cantilever beam and use these experimental results in the calibration process. Since dynamic analysis in the FE analysis of the piezoelectric cantilever beam with a dense step size is considerably time-consuming, a surrogate model is employed for efficient optimization. Through the design optimization of the PZT-based piezoelectric cantilever beam, a high-performance piezoelectric device was developed. The sensitivity of the variables at the optimum design is analyzed to suggest a further improved device.

  11. HIE ISOLDE Alignment and monitoring system technical design and project status

    CERN Document Server

    Gayde, J C; Kautzmann, G; Leclercq, Y; Waniorek, S; Williams, L

    2012-01-01

    In the frame of the HIE ISOLDE project most of the existing ISOLDE REX line will be replaced by a superconducting linac in order to upgrade the energy and intensity of the REX ISOLDE facility at CERN. Beam-physics simulations show that the optimum linac working conditions are obtained when the main axes of the active components, RF cavities and solenoid placed inside the cryostats, are aligned and permanently monitored on the REX Nominal Beam Line (NBL) within a precision of 0.3 mm for the cavities and 0.15 mm for the solenoids at one sigma level along directions perpendicular to the beam axis. This paper presents the proposed adjustment and alignment system based on opto-electronic sensors, optics and precise mechanic elements which are used, for some of them, in various non-standard environmental conditions such as high vacuum, cryogenic temperatures.

  12. A Labview based FPGA data acquisition with integrated stage and beam transport control

    Energy Technology Data Exchange (ETDEWEB)

    Laird, J.S., E-mail: csirojamie@gmail.com [CSIRO, Earth Science and Resource Engineering, Clayton, Victoria (Australia); Centre of Excellence in Ore Deposits (CODES), University of Tasmania, Hobart, Tasmania (Australia); School of Physics, University of Melbourne, Parkville 3010, Victoria (Australia); Szymanski, R. [School of Physics, University of Melbourne, Parkville 3010, Victoria (Australia); Ryan, C.G. [CSIRO, Earth Science and Resource Engineering, Clayton, Victoria (Australia); Centre of Excellence in Ore Deposits (CODES), University of Tasmania, Hobart, Tasmania (Australia); School of Physics, University of Melbourne, Parkville 3010, Victoria (Australia); Gonzalez-Alvarez, I. [CSIRO, Earth Science and Resource Engineering, Kensington, Western Australia (Australia)

    2013-07-01

    We report on a new FPGA based data acquisition system developed for the CSIRO Nuclear Microprobe (NMP) which is tightly integrated with both target positioning and beam transport. The data acquisition system called MicrodaQ is based on National Instruments Labview FPGA and numerous instrumentation modules spread over several PC’s. Beam transport uses a feedback control loop to optimise current on target for long unmanned experiments. These upgrades are discussed in detail and an example of the systems use for μ-Particle Induced X-ray Emission (PIXE) analysis on a Doriri apatite is briefly described.

  13. Optical beam-shaping design based on aspherical lenses for circularization collimation, and expansion of elliptical laser beams

    Science.gov (United States)

    Serkan, Mert; Kirkici, Hulya

    2008-01-01

    We present two optical system designs using aspherical lenses for beam circularization, collimation, and expansion of semiconductor lasers for possible application in lidar systems. Two different optical lens systems are investigated; namely, two aspherical lens and single aspherical lens systems. Software package programs of ZEMAX and MATLAB to simulate the optical designs are used. The beam reshaping results are presented for one specific laser beam output.

  14. Permanent bending and alignment of ZnO nanowires.

    Science.gov (United States)

    Borschel, Christian; Spindler, Susann; Lerose, Damiana; Bochmann, Arne; Christiansen, Silke H; Nietzsche, Sandor; Oertel, Michael; Ronning, Carsten

    2011-05-06

    Ion beams can be used to permanently bend and re-align nanowires after growth. We have irradiated ZnO nanowires with energetic ions, achieving bending and alignment in different directions. Not only the bending of single nanowires is studied in detail, but also the simultaneous alignment of large ensembles of ZnO nanowires. Computer simulations reveal how the bending is initiated by ion beam induced damage. Detailed structural characterization identifies dislocations to relax stresses and make the bending and alignment permanent, even surviving annealing procedures.

  15. Permanent bending and alignment of ZnO nanowires

    Energy Technology Data Exchange (ETDEWEB)

    Borschel, Christian; Spindler, Susann; Oertel, Michael; Ronning, Carsten [Institut fuer Festkoerperphysik, Friedrich-Schiller-Universitaet Jena, Max-Wien-Platz 1, 07743 Jena (Germany); Lerose, Damiana [MPI fuer Mikrostrukturphysik, Weinberg 2, 06120 Halle/Saale (Germany); Institut fuer Photonische Technologien, Albert-Einstein-Strasse 9, 07745 Jena (Germany); Bochmann, Arne [Institut fuer Photonische Technologien, Albert-Einstein-Strasse 9, 07745 Jena (Germany); Christiansen, Silke H. [Institut fuer Photonische Technologien, Albert-Einstein-Strasse 9, 07745 Jena (Germany); MPI fuer die Physik des Lichts, Guenther-Scharowsky-Str. 1, 91058 Erlangen (Germany); Nietzsche, Sandor [Zentrum fuer Elektronenmikroskopie, Friedrich-Schiller-Universitaet Jena, Ziegelmuehlenweg 1, 07743 Jena (Germany)

    2011-07-01

    Ion beams can be used to bend or re-align nanowires permanently, after they have been grown. We have irradiated ZnO nanowires with ions of different species and energy, achieving bending and alignment in various directions. We study the bending of single nanowires as well as the simultaneous alignment of large ensembles of ZnO nanowires in detail. Computer simulations show that the bending is initiated by ion beam induced damage. Dislocations are identified to relax stresses and make the bending and alignment permanent and resistant against annealing procedures.

  16. Experimental validation of ultra-thin metalenses for N-beam emissions based on transformation optics

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Kuang, E-mail: zhangkuang@hit.edu.cn [Department of Microwave Engineering, Harbin Institute of Technology, Harbin 150001 (China); State Key Laboratory of Millimeter Waves, Nanjing 210096 (China); Ding, Xumin; Meng, Fanrong; Wu, Qun [Department of Microwave Engineering, Harbin Institute of Technology, Harbin 150001 (China); Wo, Deliang [Shang Hai Electro-Mechanical Engineering Institute, Shanghai 201109 (China)

    2016-02-01

    A general design of metalenses for N-beam emissions is proposed based on transformation optics. A linear mapping function is adopted to achieve the homogeneous characterization of the transforming medium, which is therefore easy to be achieved compared with previous designs limited by inhomogeneity based on transformation optics. To verify the theoretical design, a four-beam antenna constructed with ultrathin, homogenous, and uniaxial anisotropic metalens is designed, fabricated, and measured. It is shown that the realized gain of the four-beam antenna is increased by 6 dB compared with the single dipole source, while working frequency and relative bandwidth are kept unchanged. The measured far-field pattern verifies theoretical design procedure.

  17. Development of educational software for beam loading analysis using pen-based user interfaces

    Directory of Open Access Journals (Sweden)

    Yong S. Suh

    2014-01-01

    Full Text Available Most engineering software tools use typical menu-based user interfaces, and they may not be suitable for learning tools because the solution processes are hidden and students can only see the results. An educational tool for simple beam analyses is developed using a pen-based user interface with a computer so students can write and sketch by hand. The geometry of beam sections is sketched, and a shape matching technique is used to recognize the sketch. Various beam loads are added by sketching gestures or writing singularity functions. Students sketch the distributions of the loadings by sketching the graphs, and they are automatically checked and the system provides aids in grading the graphs. Students receive interactive graphical feedback for better learning experiences while they are working on solving the problems.

  18. 基于D2shepp统计法的非序列局部比对%Local Alignment-Free Sequences Based on D2shepp Statistics

    Institute of Scientific and Technical Information of China (English)

    刘雪梅; 文德华; 於黄忠; 高亚妮

    2012-01-01

    两条生物序列间的相似性比对是计算生物学探讨的主要问题之一,一种快速的依赖于k-元组的D2shepp统计法目前已被应用到非序列比对中.文中在零模型的基础上产生两条相互独立的随机序列,基于D2shepp统计法进行了两条序列的局部比对,找到局部比对的最优值并求和.在此基础上模拟了Power值的分布情况,并分析了不同k参数下的Power值分布.在相同参数下将文中提出的局部比对与已有的D2shepp统计的全局比对进行比较,发现局部比对D2shepp统计的Power值随着序列长度的增大而快速地接近于1,比全局比对更加快速、准确.%The similarities between two biological sequences is a major issue in computational biology, and a fast D2shepp statistics method based on the joint i-tuple content in two sequences has been used in the alignment-free sequence comparison. In this paper, two separate random sequences are generated based on the zero model, and their local alignment is conducted based on D2shepp statistics, thus obtaining the optimal values and the sum of these values. Then, the Power distribution is simulated and the distributions with different k values are analyzed. Finally, with the same parameters, the proposed local alignment is compared with the global alignment based on D2shepp statistics. It is found that the Power value of the proposed local alignment rapidly approaches 1 with the increase of the sequence length and that the proposed local alignment is quicker and more accurate than the global one.

  19. Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System.

    Science.gov (United States)

    Liu, Yu; Hong, Yang; Lin, Chun-Yuan; Hung, Che-Lun

    2015-01-01

    The Smith-Waterman (SW) algorithm has been widely utilized for searching biological sequence databases in bioinformatics. Recently, several works have adopted the graphic card with Graphic Processing Units (GPUs) and their associated CUDA model to enhance the performance of SW computations. However, these works mainly focused on the protein database search by using the intertask parallelization technique, and only using the GPU capability to do the SW computations one by one. Hence, in this paper, we will propose an efficient SW alignment method, called CUDA-SWfr, for the protein database search by using the intratask parallelization technique based on a CPU-GPU collaborative system. Before doing the SW computations on GPU, a procedure is applied on CPU by using the frequency distance filtration scheme (FDFS) to eliminate the unnecessary alignments. The experimental results indicate that CUDA-SWfr runs 9.6 times and 96 times faster than the CPU-based SW method without and with FDFS, respectively.

  20. 基于CKF的SINS大方位失准角初始对准%Initial alignment of large azimuth misalignment angle in SINS based on CKF

    Institute of Scientific and Technical Information of China (English)

    孙枫; 唐李军

    2012-01-01

    The error equation of large azimuth misalignment angle in SINS is nonlinear. To improve the accuracy of the initial alignment in nonlinear model, a new nonlinear filtering method named cubature Kalman filter (CKF) is applied in the initial alignment of SINS. Therefore, an initial alignment nonlinear model under large azimuth misalignment angle is established, and the CKF filter theory based on the spherical-radial cubature criteria is analyzed; then the nonlinear model is simulated with CKF. Simulation results show that the CKF can nicely deal with the nonlinear problems in initial alignment and improve the precision of initial alignment; and the azimuth misalignment angle error can converge to -33.13', which is close to the theoretical estimation precision -32.40' and is better than the-84.14' of EKF.%大方位失准角捷联惯导系统(strapdown inertial narigation system,SINS)误差方程是非线性的,为改善非线性模型下初始对准的精度,提出将一种新的非线性滤波方法(cubature Kalman filter,CKF)应用于捷联惯导系统初始对准中.为此建立了大方位失准角下初始对准非线性模型,分析了基于spherical-radial cubature准则的CKF滤波原理,对非线性模型进行了CKF滤波仿真.仿真结果表明CKF能够很好地处理初始对准中的非线性问题,提高初始对准精度,方位失准角误差能够收敛到- 33.13′,接近理论估计精度-32.40′,优于EKF的-84.14′.

  1. Parallel aligned liquid crystal on silicon display based optical set-up for the generation of polarization spatial distributions

    Science.gov (United States)

    Estévez, Irene; Lizana, Angel; Zheng, Xuejie; Peinado, Alba; Ramírez, Claudio; Martínez, Jose Luis; Márquez, Andrés.; Moreno, Ignacio; Campos, Juan

    2015-06-01

    Liquid Crystals on Silicon (LCOS) displays are a type of LCDs that work in reflection. Such devices, due to the double pass that the light beam performs through the LC cells, lead to larger phase modulation than transmissive LCDs with the same thickness. By taking advantage of this modulation capability exhibited by LCOS displays, we propose a new experimental set-up which is able to provide customized state of polarization spatial distributions just by means of a single LCOS display. To this aim, a double reflection on different halves of the display is properly performed. This fact is achieved by including a compact optical system that steers the light and performs a proper polarization plane rotation. The set-up has been experimentally implemented and some experimental concerns are discussed. The suitability of the system is provided by generating different experimental spatial distributions of polarization. In this regard, well-known polarization distributions, as axial, azimuthal or spiral linear polarization patterns are here provided. Based on the excellent results obtained, the suitability of the system to generate different spatially variant distributions of polarization is validated.

  2. Ultrarelativistic laser systems based on coherent beam combining

    Science.gov (United States)

    Bagayev, S. N.; Trunov, V. I.; Pestryakov, E. V.; Frolov, S. A.; Leschenko, V. E.; Kirpichnikov, A. V.; Kokh, A. E.; Petrov, V. V.; Vasiliev, V. A.

    2012-07-01

    Conceptual design for femtosecond laser system of exawatt class, based on multi-channel amplifier and coherent field combining of petawatt amplifier channels with phase-frequency controlled radiation by optical clock are discussed. The scheme of start petawatt level few-cycle laser system with stable phase-frequency parameters determinated by the accuracy of the optical standard based on parametric amplification in big-size LBO crystals pumped by picosecond pulses is analyzed.

  3. Ultrarelativistic laser systems based on coherent beam combining

    Energy Technology Data Exchange (ETDEWEB)

    Bagayev, S. N.; Trunov, V. I.; Pestryakov, E. V.; Frolov, S. A.; Leschenko, V. E.; Kirpichnikov, A. V.; Kokh, A. E.; Petrov, V. V.; Vasiliev, V. A. [Institute of Laser Physics SB RAS, Ac. Lavrentyev' s prosp., 13/3, Novosibirsk (Russian Federation); Institute of Geology and Mineralogy SB RAS, Ac. Koptug' s prosp., 3, Novosibirsk (Russian Federation); Institute of Laser Physics SB RAS, Ac. Lavrentyev' s prosp., 13/3, Novosibirsk (Russian Federation)

    2012-07-11

    Conceptual design for femtosecond laser system of exawatt class, based on multi-channel amplifier and coherent field combining of petawatt amplifier channels with phase-frequency controlled radiation by optical clock are discussed. The scheme of start petawatt level few-cycle laser system with stable phase-frequency parameters determinated by the accuracy of the optical standard based on parametric amplification in big-size LBO crystals pumped by picosecond pulses is analyzed.

  4. Interference Alignment-based Precoding and User Selection with Limited Feedback in Two-cell Downlink Multi-user MIMO Systems

    Directory of Open Access Journals (Sweden)

    Yin Zhu

    2016-05-01

    Full Text Available Interference alignment (IA is a new approach to address interference in modern multiple-input multiple-out (MIMO cellular networks in which interference is an important factor that limits the system throughput. System throughput in most IA implementation schemes is significantly improved only with perfect channel state information and in a high signal-to-noise ratio (SNR region. Designing a simple IA scheme for the system with limited feedback and investigating system performance at a low-to-medium SNR region is important and practical. This paper proposed a precoding and user selection scheme based on partial interference alignment in two-cell downlink multi-user MIMO systems under limited feedback. This scheme aligned inter-cell interference to a predefined direction by designing user’s receive antenna combining vectors. A modified singular value decomposition (SVD-based beamforming method and a corresponding user-selection algorithm were proposed for the system with low rate limited feedback to improve sum rate performance. Simulation results show that the proposed scheme achieves a higher sum rate than traditional schemes without IA. The modified SVD-based beamforming scheme is also superior to the traditional zero-forcing beamforming scheme in low-rate limited feedback systems. The proposed partial IA scheme does not need to collaborate between transmitters and joint design between the transmitter and the users. The scheme can be implemented with low feedback overhead in current MIMO cellular networks.

  5. A Cherenkov-based Beam Loss Scintillator system for beam, background and online luminosity monitoring at the LHCb experiment at CERN

    CERN Document Server

    Alessio, F; Jacobsson, R

    2013-01-01

    The installation of a scintillator-based system in the LHCb cavern was initially proposed in order to observe injection problems around the LHCb interaction region. Thanks to the fact that LHCb had already developed a custom-made electronics board (BPIM) for the LHCb beam pickups and global LHCb timing monitoring, a complete, inexpensive but flexible and robust system was quickly developed and installed few cm from the beam pipe just in front of the LHCb VELO detector in time for the very first beams injected in the LHC. The current and final system – commonly referred to as Beam Loss Scintillator (BLS) system - ultimately played a central role in the fast beam, background and online luminosity monitoring at LHCb. In this paper, the features of the detector – based on quartz radiator and Cherenkov light - are described, including the functionalities that the system acquired during the proton-proton physics programmes in 2009- 2013 thanks to its flexibility, reliability and sensitivity to beam hal...

  6. Design of a ring resonator-based optical beam forming network for phased array receive antennas

    NARCIS (Netherlands)

    Klooster, van 't J.W.; Roeloffzen, C.G.H.; Meijerink, A.; Zhuang, L.; Marpaung, D.A.I.; Etten, van W.C.; Heideman, R.G.; Leinse, A.; Schippers, H.; Verpoorte, J.; Wintels, M.

    2008-01-01

    A novel squint-free ring resonator-based optical beam forming network (OBFN) for phased array antennas (PAA) is proposed. It is intended to provide broadband connectivity to airborne platforms via geostationary satellites. In this paper, we present the design of the OBFN and its control system. Our

  7. Application of electron beam equipment based on a plasma cathode gun in additive technology

    Science.gov (United States)

    Galchenko, N. K.; Kolesnikova, K. A.; Semenov, G. V.; Rau, A. G.; Raskoshniy, S. Y.; Bezzubko, A. V.; Dampilon, B. V.; Sorokova, S. N.

    2016-11-01

    The paper discusses the application of electron beam equipment based on a plasma cathode gun for three-dimensional surface modification of metals and alloys. The effect of substrate surface preparation on the adhesion strength of gas thermal coatings has been investigated.

  8. Vibration based Structural Health Monitoring of a composite T-beam

    NARCIS (Netherlands)

    Ooijevaar, T.H.; Loendersloot, R.; Warnet, L.L.; Boer, de A.; Akkerman, R.

    2010-01-01

    A vibration based damage identification method is investigated experimentally for a 2.5-dimensional composite structure. The dynamic response of an intact and a locally delaminated 16-layer unidirectional carbon fibre PEKK reinforced T-beam is considered. A force–vibration set-up, including a laser

  9. General Model to Predict Power Flow Transmitted into Laminated Beam Bases in Flexible Isolation Systems

    Institute of Scientific and Technical Information of China (English)

    NIU Junchuan; GE Peiqi; HOU Cuirong; LIM C W; SONG Kongjie

    2009-01-01

    For estimating the vibration transmission accurately and performing vibration control efficiently in isolation systems, a novel general model is presented to predict the power flow transmitted into the complicate flexible bases of laminated beams. In the model, the laminated beam bases are simulated by the first-order shear deformation laminated plate theory, which is relatively simple and economic but accurate in predicting the vibration solutions of flexible isolation systems with laminated beam bases in comparison with classical laminated beam theories and higher order theories. On the basis of the presented model, substructure technique and variational principle are employed to obtain the governing equation of the isolation system and the power flow solution. Then, the vibration characteristics of the flexible isolation systems with laminated bases are investigated. Several numerical examples are given to show the validity and efficiency of the presented model. It is concluded that the presented model is the extension of the classical one and it can obtain more accurate power flow solutions.

  10. Controlling the Beam Halo-Chaos via Wavelet-Based Feedback Periodically

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    In our recent work, worth mentioning in particular is the wavelet-based feedback controller, which works much better than the others for controlling the proton beam haio-chaos, where the master wavelet function isor, in a simplified form,and generalized form:(1)(2)(3)where a and b are scaling and translation constants, respectively. C is a selected constant. The

  11. Three criteria for quantum random number generators based on beam splitters

    OpenAIRE

    Svozil, Karl

    2009-01-01

    We propose three criteria for the generation of random digital strings from quantum beam splitters: (i) three or more mutually exclusive outcomes corresponding to the invocation of three- and higher dimensional Hilbert spaces; (ii) the mandatory use of pure states in conjugated bases for preparation and detection; and (iii) the use of entangled singlet (unique) states for elimination of bias.

  12. Beam feasibility study of a collimator with in-jaw beam position monitors

    Science.gov (United States)

    Wollmann, Daniel; Nosych, Andriy A.; Valentino, Gianluca; Aberle, Oliver; Aßmann, Ralph W.; Bertarelli, Alessandro; Boccard, Christian; Bruce, Roderik; Burkart, Florian; Calvo, Eva; Cauchi, Marija; Dallocchio, Alessandro; Deboy, Daniel; Gasior, Marek; Jones, Rhodri; Kain, Verena; Lari, Luisella; Redaelli, Stefano; Rossi, Adriana

    2014-12-01

    At present, the beam-based alignment of the LHC collimators is performed by touching the beam halo with both jaws of each collimator. This method requires dedicated fills at low intensities that are done infrequently and makes this procedure time consuming. This limits the operational flexibility, in particular in the case of changes of optics and orbit configuration in the experimental regions. The performance of the LHC collimation system relies on the machine reproducibility and regular loss maps to validate the settings of the collimator jaws. To overcome these limitations and to allow a continuous monitoring of the beam position at the collimators, a design with jaw-integrated Beam Position Monitors (BPMs) was proposed and successfully tested with a prototype (mock-up) collimator in the CERN SPS. Extensive beam experiments allowed to determine the achievable accuracy of the jaw alignment for single and multi-turn operation. In this paper, the results of these experiments are discussed. The non-linear response of the BPMs is compared to the predictions from electromagnetic simulations. Finally, the measured alignment accuracy is compared to the one achieved with the present collimators in the LHC.

  13. Polarization Beam Splitter Based on Self-Collimation Effect in Two-Dimensional Photonics Crystal

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jie; ZHAO De-Yin; ZHOU Chnan-Hong; JIANG Xun-Ya

    2007-01-01

    A photonic crystal polarization beam splitter based on the self-collimation effect is proposed. By means of the plane wave expansion method and the finite-difference time-domain method, we analyse the splitting mechanism in two alternative ways: performing a band gap structure analysis and simulating the field distribution. The results indicate that two beams of different polarizations can be split with an extinction ratio of nearly 20 dB in a wavelength range of 90nm. The splitter may have practical applications in integrated photonic circuits.

  14. Active and passive compensation of APPLE II-introduced multipole errors through beam-based measurement

    Energy Technology Data Exchange (ETDEWEB)

    Chung, Ting-Yi; Huang, Szu-Jung; Fu, Huang-Wen; Chang, Ho-Ping; Chang, Cheng-Hsiang [National Synchrotron Radiation Research Center, Hsinchu Science Park, Hsinchu 30076, Taiwan (China); Hwang, Ching-Shiang [National Synchrotron Radiation Research Center, Hsinchu Science Park, Hsinchu 30076, Taiwan (China); Department of Electrophysics, National Chiao Tung University, Hsinchu 30050, Taiwan (China)

    2016-08-01

    The effect of an APPLE II-type elliptically polarized undulator (EPU) on the beam dynamics were investigated using active and passive methods. To reduce the tune shift and improve the injection efficiency, dynamic multipole errors were compensated using L-shaped iron shims, which resulted in stable top-up operation for a minimum gap. The skew quadrupole error was compensated using a multipole corrector, which was located downstream of the EPU for minimizing betatron coupling, and it ensured the enhancement of the synchrotron radiation brightness. The investigation methods, a numerical simulation algorithm, a multipole error correction method, and the beam-based measurement results are discussed.

  15. A Beam Search-based Algorithm for Flexible Manufacturing System Scheduling

    Institute of Scientific and Technical Information of China (English)

    ZHOU Bing-hai; ZHOU Xiao-jun; CAI Jian-guo; FENG Kun

    2002-01-01

    A new algorithm is proposed for the flexible manufacturing system (FMS) scheduling problem in this paper. The proposed algorithm is a heuristic based on filtered beam search. It considers the machines and automated guided vehicle (AGV) as the primary resources, It utilizes system constraints and related manufacturing and processing information to generate machines and AGV schedules. The generated schedules can be an entire scheduling horizon as well as various lengths of scheduling periods. The proposed algorithm is also compared with other well-known dispatching rulesbased FMS scheduling. The results indicate that the beam search algorithm is a simple, valid and promising algorithm that deserves further research in FMS scheduling field.

  16. Fuzzy logic based feedback control system for laser beam pointing stabilization.

    Science.gov (United States)

    Singh, Ranjeet; Patel, Kiran; Govindarajan, J; Kumar, Ajai

    2010-09-20

    This paper reports a fuzzy logic based feedback control system for beam pointing stabilization of a high-power nanosecond Nd:YAG laser operating at 30 Hz. This is achieved by generating the correcting signal for each consequent pulse from the error in the pointing position of the previous laser pulse. We have successfully achieved a reduction of beam position fluctuation from ±60 to ±5.0 μrad without the focusing optics and ±0.9 μrad with focusing optics.

  17. Feedback Control of Laser Welding Based on Frequency Analysis of Light Emissions and Adaptive Beam Shaping

    Science.gov (United States)

    Mrňa, L.; Šarbort, M.; Řeřucha, Š.; Jedlička, P.

    This paper presents a novel method for optimization and feedback control of laser welding process. It is based on frequency analysis of the light emitted during the process and adaptive shaping of the laser beam achieved by an active optical element. Experimentally observed correlations between the focal properties of the laser beam, the weld depth and the frequency characteristics of the light emissions, which form the basis of the method, are discussed in detail. The functionality and the high efficiency of the method are demonstrated for a variety of welding parameters settings usually used in industrial practice.

  18. DESIGN OF A SHAPED BEAM BASE STATION ANTENNA USING GENETIC ALGORITHM

    Institute of Scientific and Technical Information of China (English)

    Liu Ying; Bu Antao; Gong Shuxi; Shen Zongzhen; Xiao Liangyong

    2003-01-01

    Genetic algorithm is used to optimize a base station antenna in order to achieve a shaped beam in a frequency band. During the optimization process, different antenna models have been evaluated using the Method of Moment (MoM). As a result of this optimization, a shaped beam antenna with suppressed sidelobe smaller than -18dB, backlobe smaller than -30dB and filled null point larger than -15dB is achieved. The proposed method is closer to reality compared with previous methods and can be used to optimize complicated antennas. The result is very useful for engineering and theoretical analysis.

  19. Preparation and characterization of graphene-based vanadium oxide composite semiconducting films with horizontally aligned nanowire arrays

    Energy Technology Data Exchange (ETDEWEB)

    Jung, Hye-Mi; Um, Sukkee, E-mail: sukkeeum@hanyang.ac.kr

    2016-05-01

    Highly oriented crystalline hybrid thin films primarily consisting of Magnéli-phase VO{sub 2} and conductive graphene nanoplatelets are fabricated by a sol–gel process via dipping pyrolysis. A combination of chemical, microstructural, and electrical analyses reveals that graphene oxide (GO)-templated vanadium oxide (VO{sub x}) nanocomposite films exhibit a vertically stacked multi-lamellar nanostructure consisting of horizontally aligned vanadium oxide nanowire (VNW) arrays along the (hk0) set of planes on a GO template, with an average crystallite size of 41.4 Å and a crystallographic tensile strain of 0.83%. In addition, GO-derived VO{sub x} composite semiconducting films, which have an sp{sup 3}/sp{sup 2} bonding ratio of 0.862, display thermally induced electrical switching properties in the temperature range of − 20 °C to 140 °C, with a transition temperature of approximately 65 °C. We ascribe these results to the use of GO sheets, which serve as a morphological growth template as well as an electrochemically tunable platform for enhancing the charge-carrier mobility. Moreover, the experimental studies demonstrate that graphene-based Magnéli-phase VO{sub x} composite semiconducting films can be used in advanced thermo-sensitive smart sensing/switching applications because of their outstanding thermo-electrodynamic properties and high surface charge density induced by the planar-type VNWs. - Highlights: • VO{sub x}-graphene oxide composite (G/VO{sub x}) films were fabricated by sol–gel process. • The G/VO{sub x} films mainly consisted of Magnéli-phase VO{sub 2} and reduced graphene sheets. • The G/VO{sub x} films exhibited multi-lamellar textures with planar VO{sub x} nanowire arrays. • The G/VO{sub x} films showed the thermo-sensitive electrical switching properties. • Effects of GOs on the electrical characteristics of the G/VO{sub x} films were discussed.

  20. Prism Window for Optical Alignment

    Science.gov (United States)

    Tang, Hong

    2008-01-01

    A prism window has been devised for use, with an autocollimator, in aligning optical components that are (1) required to be oriented parallel to each other and/or at a specified angle of incidence with respect to a common optical path and (2) mounted at different positions along the common optical path. The prism window can also be used to align a single optical component at a specified angle of incidence. Prism windows could be generally useful for orienting optical components in manufacture of optical instruments. "Prism window" denotes an application-specific unit comprising two beam-splitter windows that are bonded together at an angle chosen to obtain the specified angle of incidence.