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Sample records for bcr sequential extraction

  1. Optimisation of beryllium-7 gamma analysis following BCR sequential extraction

    International Nuclear Information System (INIS)

    Graphical abstract: Showing decrease in analytical uncertainty using the optimal (combined preconcentrated sample extract) method. nv (no value) where extract activities were 7Be geochemical behaviour is required to support tracer studies. ► Sequential extraction with natural 7Be returns high analytical uncertainties. ► Preconcentrating extracts from a large sample mass improved analytical uncertainty. ► This optimised method can be readily employed in studies using low activity samples. - Abstract: The application of cosmogenic 7Be as a sediment tracer at the catchment-scale requires an understanding of its geochemical associations in soil to underpin the assumption of irreversible adsorption. Sequential extractions offer a readily accessible means of determining the associations of 7Be with operationally defined soil phases. However, the subdivision of the low activity concentrations of fallout 7Be in soils into geochemical fractions can introduce high gamma counting uncertainties. Extending analysis time significantly is not always an option for batches of samples, owing to the on-going decay of 7Be (t1/2 = 53.3 days). Here, three different methods of preparing and quantifying 7Be extracted using the optimised BCR three-step scheme have been evaluated and compared with a focus on reducing analytical uncertainties. The optimal method involved carrying out the BCR extraction in triplicate, sub-sampling each set of triplicates for stable Be analysis before combining each set and coprecipitating the 7Be with metal oxyhydroxides to produce a thin source for gamma analysis. This method was applied to BCR extractions of natural 7Be in four agricultural soils. The approach gave good counting statistics from a 24 h analysis period (∼10% (2σ) where extract activity >40% of total activity) and generated statistically useful sequential extraction profiles. Total recoveries of 7Be fell between 84 and 112%. The stable Be data demonstrated that the extraction

  2. Evaluation of the BCR sequential extraction procedure applied for two unpolluted Spanish soils

    International Nuclear Information System (INIS)

    The procedure of BCR sequential extraction has been applied to five samples from two unpolluted soils in southern Spain. Total concentrations of different elements have been calculated as the sum of the three fractions of BCR and the residue has been measured for each. Also, a total analysis based on INAA or total-digestion techniques has been performed for the same samples. BCR and total analysis closely agreed for As, Pb and Cd. For Cu, Co, Cr and Zn the comparison of the results did not provide definitive conclusions concerning the capability of BCR in measuring total concentrations. On the other hand, in these cases, a certain correlation was found between the concentrations measured and some soil characteristics, especially the clay, organic-matter and CaCO3 contents. BCR proved incapable of providing accurate measurements for Ni

  3. Arsenic fractionation in sediments of different origins using BCR sequential and single extraction methods

    International Nuclear Information System (INIS)

    The arsenic (As) contaminated sediment serves as a long-term source of arsenic because its mobility and transport in the environment are strongly influenced to associated solid phase. A single extraction method based on the reagents employed in the BCR three steps sequential extraction scheme (BCR-SES) for partitioning of arsenic (As) in sediment samples has been developed. The single-step extraction enabled a reduction of extraction times, yielding extractable contents in accordance with those obtained by application of the BCR-SES, which can be regarded as a standard method and validated by using certified reference material BCR 701. The extractable As content associated with different phases in sediment samples were analysed by electrothermal atomic absorption spectrophotometer. The extraction efficiency of As by single-step extraction was slightly higher than BCR-SES, ranged (100-104%), while difference was not significant at 95% confidence limit with <10% precision. The sediment samples from different origins varied in their physico-chemical properties and total As content. The relative mobility of As obtained from different origins was found in increasing order as: acid soluble fraction < oxidizable fraction < reducible fraction. The acid soluble fraction of As was higher in lake sediment samples as compared to those of canal and river sediments, indicating the contamination of lake ecosystem.

  4. BCR-701: A review of 10-years of sequential extraction analyses

    International Nuclear Information System (INIS)

    A detailed quantitative analysis was performed on data presented in the literature that focused on the sequential extraction of cadmium (Cd), chromium (Cr), copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn) from the certified reference material BCR-701 (lake sediment) using the three-step harmonized BCR procedure. The accuracy of data reported in the literature, including precision and different measures of trueness, was assessed relative to the certified values for BCR-701. Forty data sets were accepted following extreme outlier removal, and statistically summarized with measures of central tendency, dispersion, and distribution form. In general, literature data were similar in their measurement precision to the expert laboratories used to certify the trace element contents in BCR-701. The overall median precision for literature reported data was 10% (range 6-19%), compared to certifying laboratories of 9% (range 4-33%). One measure of literature data trueness was assessed via a confirmatory approach using a robust bootstrap method. Only 22% of the comparisons indicated significantly different (all were lower) concentrations reported in the literature compared to certified values. The question of whether the differences are practically significant for environmental studies is raised. Bias was computed as a measure of trueness, and literature data were more frequently negatively biased, indicating lower concentrations reported in the literature for the six trace elements for the three-step sequential procedure compared to the certified values. However, 95% confidence intervals about the average bias for the 18 comparisons indicated only four instances when a mean bias of 0 (i.e., measured = certified) was not incorporated-suggesting statistical difference. Finally, Z-scores incorporating a Horwitz-type function were used to assess the general trueness of laboratory data. Of the 468 laboratory Z-score values computed, 92% were considered to be satisfactory, 5% were

  5. Comparative study of optimised BCR sequential extraction scheme and acid leaching of elements in the certified reference material NIST 2711

    International Nuclear Information System (INIS)

    The optimised BCR sequential extraction procedure and a 4 h 1 mol L-1 HCl partial extraction have been performed on the NIST 2711 reference material for a suite of 12 elements (Cd, Sb, Pb, Al, Cr, Mn, Fe, Co, Ni, Cu, Zn, As) using magnetic sector ICP-MS. A pseudo-total aqua regia digest of NIST 2711 has also been undertaken for quality assurance purposes, and comparison of the sum of the four BCR fractions, which included an aqua regia digest on the residue, with the pseudo-total aqua regia digest has been used to assess the accuracy of the BCR partitioning approach. As a result of this work, discrepancies between previous studies about BCR partitioning of elements in NIST 2711 have been discussed and an increase in confidence about the use of BCR partitioning scheme on seven elements (Cd, Pb, Al, Mn, Fe, Cu, Zn) in this standard material has been obtained. On the other hand, BCR partitioning for Sb, Cr, Co, Ni and As has been provided for the first time. Partial extraction results are also reported for the same 12 elements analysed by the optimised BCR procedure, with the partial extraction results exhibiting a strong correlation with the sum of the three labile steps of the BCR procedure

  6. Evaluating CO2 mineralization capacity of sedimentary rock Using BCR sequential extraction procedures

    Science.gov (United States)

    Yang, Gang-Ting; Yu, Chi-Wen; Yang, Hsiao-Ming; Chiao, Chung-Hui; Yang, Ming-Wei

    2015-04-01

    To relief the high concentration of carbon dioxide in the atmosphere, carbon capture and storage (CCS) is gradually becoming an important concept to reduce greenhouse gas emissions. In IPCC Special Report on CCS, the storage mechanisms for geological formations are categorized into structural/stratigraphic, hydrodynamic and geochemical trappings. Geochemical trapping is considered as a storage mechanism, which can further increase storage capacity, effectiveness and security in terms of permanent CO2 sequestration. The injected CO2 can have geochemical interactions with pore fluid and reservoir rocks and transform into minerals. It is important to evaluate the capacity of reservoir rock for sequestrating CO2. In this study, sedimentary rock samples were collected from a 2-km-deep well in Midwestern Taiwan; and, the BCR sequential extraction experiments developed by European Union Measurement and Testing Programme were conducted. BCR was designed for extracting three major phases from soil, including exchangeable phase and carbonates (the first stage), reducible phase (the second stage) and oxidizable phase (the third stage). The chemistry of extracted solutions and rock residues were measured with ICP-MS and XRF, respectively. According to the results of XRF, considerable amounts of calcium and iron can be extracted by BCR procedures but other cations are negligible. In general, shale has a higher capacity of CO2 sequestration than sandstone. The first stage of extraction can release about 6 (sandstone) to 18.5 (shale) g of calcium from 1 kg rock, which are equivalent to 6.6 and 20.4 g CO2/kg rock, respectively. In the second stage extraction, 0.71 (sandstone) to 1.38 (shale) g/kg rock of iron can be released and can mineralized 0.56 to 1.08 g CO2/kg rock. However, there are no considerable cations extracted in the third stage of BCR as shown by the XRF analysis. In addition, the results of ICP-MS show that Mg can be released in the order of 10-3 g from 1 kg rock

  7. Kriging analysis of geochemical data obtained by sequential extraction procedure (BCR)

    Science.gov (United States)

    Fajkovic, Hana; Pitarević Svedružić, Lovorka; Prohić, Esad; Rončević, Sanda; Nemet, Ivan

    2015-04-01

    Field examination and laboratory analysis were performed to establish whether nonsanitary landfill Bastijunski brig has a negative influence on Vransko Lake, situated only 1500 m away. Vransko Lake is Croatia's largest natural lake, and it is a part of the Nature Park and ornithological reserve, which indicates its high biodiversity. Therefore it is necessary to understand the environmental processes and complex sediment/water interface. Lake sediments are considered to be a good "sinkhole'and are often the final recipients of anthropogenic and natural pollutants through adsorption onto the organic or clay fraction in sediments. Geochemical investigation were obtained throughout more than 50 lake sediments cores situated in different parts of the lake Speciation of heavy metals by modified BCR sequential extraction procedure with the addition of a first step of sequential extraction procedure by Tessier and analysis of residual by aqua regia were used to determine the amounts of selected elements (Al, Cd, Cr, Co, Cu, Fe, Mn, Ni, Pb, Zn) in different fractions. With such approach it is possible to determine which element will be extracted from sediment/soil in a different environmental conditions and can be valuable tool for interpretation of the mobile fraction of the elements, considered bioavailability, that present threat to biota in a case of a contaminant concentration magnification. All sediment and soil samples were analyzed by inductively coupled plasma atomic emission spectrometry. More accurate interpretation of data is an advantage of BCR sequential extraction procedure while high number of the data together with point data type could be considered as a drawback. Due to high amount of data, graphical presentation is advisable while interpolation tool is a first choice for point type of data, as it makes predictions for defined area based on the measurements. Distribution maps of analysed elements were obtained by kriging as a geostatistical method and

  8. Investigation of trace elements in agricultural Edirne soils by BCR sequential extraction method and its transfer to wheat plants

    International Nuclear Information System (INIS)

    Complete text of publication follows. In this study, soil samples were collected from Edirne-Turkey and subjected to a sequential procedure in order to evaluate the precision of the procedure and determine metal partitioning and concentrations of elements and to investigate the predictability of trace element on plant uptake. The samples were subjected to a three stage extraction procedure proposed by the Community Bureau of Reference (BCR) (G. Rauret et al., J. Environ. Monit., 1 (1999) 57-61.) .The three phases that were separated out were (1) carbonate, exchangeable, (2) Fe-Mn oxides and (3) organic matter. Metal concentrations were determined by ICP-OES. The wheat samples were prepared to analysis using microwave acid digestion procedure (E.P. Nardi et al., food Chem., 112 (2009) 727-732.). The pseudo-total concentrations of metals were determinated after aqua regia digestion (S. Melaku et al., Anal. Chim. Acta, 543 (2005) 117-123.). The analytical accuracy of the method was determinated by using the Standard Reference Materials ( BCR 142R Light Sandy Soil, NIST 2711 Montana Soil, NIST 2704 Buffalo River Sediment) The sum of the metal contents obtained from the modified BCR sequential extraction procedure and pseudo-total metal contents for soil samples were used to calculate recovery values (a. Tokalioglu et al., Intern. J. Environ. Anal. Chem., 86 (2006) 417-430.). In order to evaluate the bioavailability of metals, the relationships between the wheat-metal and soil-extractable metal concentrations were examined.

  9. Speciation of heavy metals by modified BCR sequential extraction procedure in different depths of sediments from Sungai Buloh, Selangor, Malaysia

    International Nuclear Information System (INIS)

    Highlights: → A BCR sequential extraction procedure was applied for measurement of heavy metals in Sungai Buloh sediments in different depths. → The amounts of CF and percentage of RAC was measured in this study too. → Highest CF was obtained for Cd, Co, Pb and Zn in these samples. → Zn at S3 and Cd at S3-S7 showed a high risk for the sediment samples. There were no elements of very high risk conditions in the selected samples. - Abstract: The sequential extraction procedure proposed by the European Standard, Measurements and Testing (SM and T) program, formerly the Community Bureau of Reference (BCR), was applied for partitioning of heavy metals (HMs) in river sediments collected along the course of Sungai Buloh and the Straits of Malacca in Selangor, Malaysia. Eight elements (V, Pb, Cd, Cr, Co, Ni, Cu and Zn) from seven stations (S1-S7) and at different depths were analyzed using the modified BCR Sequential Extraction Procedure (SEP) in combination with ICP-MS to obtain the metal distribution patterns in this region. The results showed that heavy metal contaminations at S2 and S3 was more severe than at other sampling sites, especially for Zn, Cu, Ni and Pb. Nevertheless, the element concentrations from top to bottom layers decreased predominantly. The samples from the Straits of Malacca (S4-S7) the highest contamination factors obtained were for Co, Zn and Pb while the lowest were found for V and Cr, similar to Sungai Buloh sediments. The sediments showed a low risk for V, Cr, Cu and Pb with RAC values of less than 10%, but medium risk for Co, Zn (except S3), Cd at S1 and S2 and Ni at S1, S3 and S5. Zn at S3 and Cd at S3-S7 showed high risk to our sediment samples. There is not any element of very high risk conditions in the selected samples.

  10. Time saving modified BCR sequential extraction procedure for the fraction of Cd, Cr, Cu, Ni, Pb and Zn in sediment samples of polluted lake

    International Nuclear Information System (INIS)

    The mobility, availability and persistence of heavy metals (Cd, Cr, Cu, Ni, Pb and Zn) in contaminated lake sediment samples were evaluated by means of sequential extraction scheme, proposed by the Community Bureau of Reference protocol (BCR). The metal content in the extracts was measured by atomic absorption spectrometry. The precision and accuracy of the proposed procedure were evaluated by using a certified reference material BCR 701. The maximum recoveries for heavy metals (HMs) were observed for all three steps of BCR protocol at 32 h total shaking period instead of previously reported 51 h, with p > 0.05. The lixiviation tests (DIN 38414-S4) were used to evaluate the leaching of HMs from sediment samples and it was observed that levels of water extractable HMs were low as compared to those values obtained by acid-soluble fraction of the BCR protocol

  11. Voltammetric behaviour at gold electrodes immersed in the BCR sequential extraction scheme media Application of underpotential deposition-stripping voltammetry to determination of copper in soil extracts

    International Nuclear Information System (INIS)

    The development of mercury-free electroanalytical systems for in-field analysis of pollutants requires a foundation on the electrochemical behaviour of the chosen electrode material in the target sample matrices. In this work, the behaviour of gold working electrodes in the media employed in the BCR sequential extraction protocol, for the fractionation of metals in solid environmental matrices, is reported. All three of the BCR sequential extraction media are redox active, on the basis of acidity and oxygen content as well as the inherent reducing or oxidising nature of some of the reagents employed: 0.11 M acetic acid, 0.1 M hydroxylammonium chloride (adjusted to pH 2) and 1 M ammonium acetate (adjusted to pH 2) with added trace hydrogen peroxide. The available potential ranges together with the demonstrated detection of target metals in these media are presented. Stripping voltammetry of copper or lead in the BCR extract media solutions reveal a multi-peak behaviour due to the stripping of both bulk metal and underpotential metal deposits. A procedure based on underpotential deposition-stripping voltammetry (UPD-SV) was evaluated for application to determination of copper in 0.11 M acetic acid soil extracts. A preliminary screening step in which different deposition times are applied to the sample enables a deposition time commensurate with UPD-SV to be selected so that no bulk deposition or stripping occurs thus simplifying the shape and features of the resulting voltammograms. Choice of the suitable deposition time is then followed by standards addition calibration. The method was validated by the analysis of a number of BCR 0.11 M acetic acid soil extracts. Good agreement was obtained been the UPD-SV method and atomic spectroscopic results

  12. Speciation of Heavy Metals by Modified BCR Sequential Extraction in Soils Contaminated by Phosphogypsum in Sfax, Tunisia

    Directory of Open Access Journals (Sweden)

    Ahmed Wali

    2015-01-01

    Full Text Available The accumulation of trace metals in soil is a serious environmental problem that creates a hazard when metals are transferred to water or plants. To understand the mobility and bioavailability of trace metals, the concentrations and distributions of trace metals must be established for different physical and chemical phases of the soil. We determined the concentrations of trace metals (Zn, Pb, Cu, Cr, Co, Ni, Mn, and Fe in soil using the sequential extraction method recommended by Community Bureau of Reference (BCR and analysed chemical properties, such as the pH, cation exchange capacity, total organic carbon, electrical conductivity, and calcium carbonate. Our results revealed higher concentrations of trace metals in topsoil samples (0–20 cm than in subsoil samples (20–40 cm and 40–60 cm for most metals at four sites. Zn in the topsoil was mostly associated with the non-resistant fraction at all sites. Approximately 60% more Pb was bound to the non-residual, exchangeable and reducible fractions at all sites, and soil depths. Cr, Cu, Ni and Fe were mainly in the residual fraction, whereas Mn was largely present in the non-resistant fraction. The global contamination factor of trace metals decreased with soil depth. The mobility and bioavailability were greatest for Zn, followed by Cu and Pb. DOI: http://dx.doi.org/10.5755/j01.erem.70.4.7807

  13. Effects of modified zeolite on the removal and stabilization of heavy metals in contaminated lake sediment using BCR sequential extraction.

    Science.gov (United States)

    Wen, Jia; Yi, Yuanjie; Zeng, Guangming

    2016-08-01

    Sediment can be applied on land as a soil conditioner. However, toxic substances such as heavy metals within the sediment often lead to soil contamination if no proper management is conducted prior to land application. In order to reduce the bioavailable portion of heavy metals such as Pb, Cu, Zn and Cd, zeolite as a kind of stabilizer was investigated on the effect of metal stabilization in sediment. Zeolite was firstly modified and screened to get the best condition for removal of heavy metals. Results showed that the granulated zeolite with NaCl conditioning had the highest CEC and metal sorption. Using BCR sequential extraction, the selected modified zeolite effectively stabilized Pb, Cu, Zn and Cd in sediment to different extents. It was most suitable for Cd stabilization by reducing its acid exchangeable fraction while increasing the contents of the reducible and residual fractions. Modified zeolite also immobilized Cu, Zn and Pb in sediment by enhancing one stable fraction while decreasing the acid exchangeable fraction. PMID:27136618

  14. Arsenic Mobility and Availability in Sediments by Application of BCR Sequential Extractions Method

    International Nuclear Information System (INIS)

    Arsenic is a metalloid found in nature, both naturally and due to anthropogenic activities. Among them, mining works are an important source of arsenic release to the environment. Asturias is a region where important mercury mines were exploited, and in them arsenic occurs in para genesis with mercury minerals. The toxicity and mobility of this element depends on the chemical species it is found. Fractionation studies are required to analyze the mobility of this metalloid in soils and sediments. Among them, the proposed by the Bureau Community of Reference (BCR) is one of the most employed. This method attempts to divide up, by operationally defined stages, the amount of this element associated with carbonates (fraction 1), iron and manganese oxy hydroxides (fraction 2), organic matter and sulphides (fraction 3), and finally as the amount associated residual fraction to primary and secondary minerals, that is, from the most labile fractions to the most refractory ones. Fractionation of arsenic in sediments from two mines in Asturias were studied, La Soterrana and Los Rueldos. Sediments from La Soterrana showed high levels of arsenic in the non-residual phases, indicating that the majority of arsenic has an anthropogenic origin. By contrast, in sediments from Los Rueldos most of the arsenic is concentrated in the residual phase, indicating that this element remains bound to very refractory primary minerals, as is also demonstrated by the strong correlation of arsenic fractionation and the fractionation of elements present in refractory minerals, such as iron, aluminum and titanium. (Author) 51 refs.

  15. Fractionation of metals in street sediment samples by using the BCR sequential extraction procedure and multivariate statistical elucidation of the data

    International Nuclear Information System (INIS)

    The concentrations of metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) in street sediment samples were determined by flame atomic absorption spectrometry (FAAS) using the modified BCR (the European Community Bureau of Reference) sequential extraction procedure. According to the BCR protocol for extracting the metals from the relevant target phases, 1.0 g of specimen of the sample was treated with 0.11 M acetic acid (exchangeable and bound to carbonates), 0.5 M hydroxylamine hydrochloride (bound to iron- and manganese-oxides), and 8.8 M hydrogen peroxide plus 1 M ammonium acetate (bound to sulphides and organics), sequentially. The residue was treated with aqua regia solution for recovery studies, although this step is not part of the BCR procedure. The mobility sequence based on the sum of the BCR sequential extraction stages was: Cd ∼ Zn (∼90%) > Pb (∼84%) > Cu (∼75%) > Mn (∼70%) > Co (∼57%) > Ni (∼43%) > Cr (∼40%) > Fe (∼17%). Enrichment factors as the criteria for examining the impact of the anthropogenic emission sources of heavy metals were calculated, and it was observed that the highest enriched elements were Cd, Pb, and Zn in the dust samples, average 190, 111, and 20, respectively. Correlation analysis (CA) and principal component analysis (PCA) were applied to the data matrix to evaluate the analytical results and to identify the possible pollution sources of metals. PCA revealed that the sampling area was mainly influenced from three pollution sources, namely; traffic, industrial, and natural sources. The results show that chemical sequential extraction is a precious operational tool. Validation of the analytical results was checked by both recovery studies and analysis of the standard reference material (NIST SRM 2711 Montana Soil)

  16. Use of the modified BCR three-step sequential extraction procedure for the study of trace element dynamics in contaminated soils

    International Nuclear Information System (INIS)

    The modified BCR three-step sequential extraction procedure was used to examine the temporal dynamics of trace elements in soils contaminated by an accidental spill from an opencast mine in south-west Spain. Soils were mainly contaminated with pyritic sludge and acidic wastewater, whereas some soils were affected only by acidic wastewater. The distributions obtained for both some major (Ca, Fe and Mn) and trace elements (As, Cd, Cu, Pb and Zn) in the sludge and soil samples taken at different times after the accident, 1-3 months and 21 months, were compared. Sequential extractions were useful in identifying different sources of contamination, and in obtaining additional information on the solubility of secondary minerals formed by pyrite oxidation. Thus, the effectiveness of the BCR procedure has proved to be a useful tool for predicting short- and long-term mobility of trace elements, even in complex environmental scenarios. - The modified BCR three-step sequential extraction procedure has proved a useful prediction tool for short- and long-term mobility of trace elements in contaminated soils

  17. Application of methods (sequential extraction procedures and high-pressure digestion method) to fly ash particles to determine the element constituents: A case study for BCR 176

    International Nuclear Information System (INIS)

    Sequential extraction procedures and the high-pressure digestion method were selected to determine the element constituents of fly ash samples. Sequential extraction is one of the most useful methods used to measure the various elements from municipal solid waste incineration ash and contaminated soils. The extract from each step is analyzed using various techniques and equipments, and the results are then evaluated. In this work, a six-step extraction procedure modified from that of Tessier et al. and Wang et al. was performed and applied to the certified reference material BCR 176 (city waste incineration ash). Analyses were carried out by various techniques such as inductively coupled plasma atomic emission spectrometry (ICP-AES), inductively coupled plasma-mass spectrometry (ICP-MS), scanning electron microscopy/energy-dispersive X-ray spectroscopy (SEM/EDX), and X-ray powder diffraction (XRPD) to evaluate the characteristics of fly ash. The extraction efficiency of many elements was higher than 80%, and the relative standard deviations (RSD) for recovery of most elements were within 10%. In addition, an H2O2 + HNO3 + HF mixed acid digestion solution processed using a low-temperature evaporation procedure was selected as the optimal process for fly ash digestion. The results of this work provide information on the chemical composition, distribution, and potential mobility of the investigated elements

  18. Multivariate Analyses and Evaluation of Heavy Metals by Chemometric BCR Sequential Extraction Method in Surface Sediments from Lingdingyang Bay, South China

    Directory of Open Access Journals (Sweden)

    Linglong Cao

    2015-04-01

    Full Text Available Sediments in estuary areas are recognized as the ultimate reservoirs for numerous contaminants, e.g., toxic metals. Multivariate analyses by chemometric evaluation were performed to classify metal ions (Cu, Zn, As, Cr, Pb, Ni and Cd in superficial sediments from Lingdingyang Bay and to determine whether or not there were potential contamination risks based on the BCR sequential extraction scheme. The results revealed that Cd was mainly in acid-soluble form with an average of 75.99% of its total contents and thus of high potential availability, indicating significant anthropogenic sources, while Cr, As, Ni were enriched in the residual fraction which could be considered as the safest ingredients to the environment. According to the proportion of secondary to primary phases (KRSP, Cd had the highest bioavailable fraction and represented high or very high risk, followed by Pb and Cu with medium risks in most of samples. The combined evaluation of the Pollution Load Index (PLI and the mean Effect Range Median Quotient (mERM-Q highlighted that the greatest potential environmental risk area was in the northwest of Lingdingyang Bay. Almost all of the sediments had a 21% probability of toxicity. Additionally, Principal Component Analysis (PCA revealed that the survey region was significantly affected by two main sources of anthropogenic contributions: PC1 showed increased loadings of variables in acid-soluble and reducible fractions that were consistent with the input from industrial wastes (such as manufacturing, metallurgy, chemical industry and domestic sewages; PC2 was characterized by increased loadings of variables in residual fraction that could be attributed to leaching and weathering of parent rocks. The results obtained demonstrated the need for appropriate remediation measures to alleviate soil pollution problem due to the more aggregation of potentially risky metals. Therefore, it is of crucial significance to implement the targeted

  19. Stepwise effects of the BCR sequential chemical extraction procedure on dissolution and metal release from common ferromagnesian clay minerals: A combined solution chemistry and X-ray powder diffraction study

    Energy Technology Data Exchange (ETDEWEB)

    Ryan, P.C. [Geology Department, Middlebury College, Middlebury, Vermont 05753 (United States)], E-mail: pryan@middlebury.edu; Hillier, S. [Macaulay Institute, Aberdeen, AB15 8QH UK (United Kingdom); Wall, A.J. [Department of Geosciences, Penn State University, University Park, Pennsylvania, 16802 (United States)

    2008-12-15

    Sequential extraction procedures (SEPs) are commonly used to determine speciation of trace metals in soils and sediments. However, the non-selectivity of reagents for targeted phases has remained a lingering concern. Furthermore, potentially reactive phases such as phyllosilicate clay minerals often contain trace metals in structural sites, and their reactivity has not been quantified. Accordingly, the objective of this study is to analyze the behavior of trace metal-bearing clay minerals exposed to the revised BCR 3-step plus aqua regia SEP. Mineral quantification based on stoichiometric analysis and quantitative powder X-ray diffraction (XRD) documents progressive dissolution of chlorite (CCa-2 ripidolite) and two varieties of smectite (SapCa-2 saponite and SWa-1 nontronite) during steps 1-3 of the BCR procedure. In total, 8 ({+-} 1) % of ripidolite, 19 ({+-} 1) % of saponite, and 19 ({+-} 3) % of nontronite (% mineral mass) dissolved during extractions assumed by many researchers to release trace metals from exchange sites, carbonates, hydroxides, sulfides and organic matter. For all three reference clays, release of Ni into solution is correlated with clay dissolution. Hydrolysis of relatively weak Mg-O bonds (362 kJ/mol) during all stages, reduction of Fe(III) during hydroxylamine hydrochloride extraction and oxidation of Fe(II) during hydrogen peroxide extraction are the main reasons for clay mineral dissolution. These findings underscore the need for precise mineral quantification when using SEPs to understand the origin/partitioning of trace metals with solid phases.

  20. Stepwise effects of the BCR sequential chemical extraction procedure on dissolution and metal release from common ferromagnesian clay minerals: A combined solution chemistry and X-ray powder diffraction study

    International Nuclear Information System (INIS)

    Sequential extraction procedures (SEPs) are commonly used to determine speciation of trace metals in soils and sediments. However, the non-selectivity of reagents for targeted phases has remained a lingering concern. Furthermore, potentially reactive phases such as phyllosilicate clay minerals often contain trace metals in structural sites, and their reactivity has not been quantified. Accordingly, the objective of this study is to analyze the behavior of trace metal-bearing clay minerals exposed to the revised BCR 3-step plus aqua regia SEP. Mineral quantification based on stoichiometric analysis and quantitative powder X-ray diffraction (XRD) documents progressive dissolution of chlorite (CCa-2 ripidolite) and two varieties of smectite (SapCa-2 saponite and SWa-1 nontronite) during steps 1-3 of the BCR procedure. In total, 8 (± 1) % of ripidolite, 19 (± 1) % of saponite, and 19 (± 3) % of nontronite (% mineral mass) dissolved during extractions assumed by many researchers to release trace metals from exchange sites, carbonates, hydroxides, sulfides and organic matter. For all three reference clays, release of Ni into solution is correlated with clay dissolution. Hydrolysis of relatively weak Mg-O bonds (362 kJ/mol) during all stages, reduction of Fe(III) during hydroxylamine hydrochloride extraction and oxidation of Fe(II) during hydrogen peroxide extraction are the main reasons for clay mineral dissolution. These findings underscore the need for precise mineral quantification when using SEPs to understand the origin/partitioning of trace metals with solid phases

  1. Evaluation of the three-stage bcr (european community bureau of reference) sequential extraction procedure to assess the potential mobility and toxicity of heavy metals in roadside soils

    International Nuclear Information System (INIS)

    The geochemical properties of roadside soils, specifically the association of metals with operationally defined solid fractions, were characterized. The new optimized four-step (acid extractable, reducible, oxidizable, and residual) sequential extraction procedure was applied to five roadside soils from an urban city, Lagos, Nigeria. Three elements were examined (Pb, Cu and Zn) in the < 250-mu m fraction. Data so obtained indicated that more than 50% of the metals were associated with the residual fraction, reflecting lithogenic-pedogenic control. Zinc had one-sixth of its quantity in the most mobile and/or bioavailable fraction, which is susceptible to release into solution with the decrease in pH. The amount of lead associated with the reducible fraction was significant, while an appreciable amount of copper was associated with oxidizable fraction (19%). (author)

  2. Arsenic Mobility and Availability in Sediments by Application of BCR Sequential Extractions Method; Movilidad y Disponibilidad de Arsenico en Sedimentos Mediante la Aplicacion del Metodo de Extracciones Secuenciales BCR

    Energy Technology Data Exchange (ETDEWEB)

    Larios, R.; Fernandez, R.; Rucandio, M. I.

    2011-05-13

    Arsenic is a metalloid found in nature, both naturally and due to anthropogenic activities. Among them, mining works are an important source of arsenic release to the environment. Asturias is a region where important mercury mines were exploited, and in them arsenic occurs in para genesis with mercury minerals. The toxicity and mobility of this element depends on the chemical species it is found. Fractionation studies are required to analyze the mobility of this metalloid in soils and sediments. Among them, the proposed by the Bureau Community of Reference (BCR) is one of the most employed. This method attempts to divide up, by operationally defined stages, the amount of this element associated with carbonates (fraction 1), iron and manganese oxy hydroxides (fraction 2), organic matter and sulphides (fraction 3), and finally as the amount associated residual fraction to primary and secondary minerals, that is, from the most labile fractions to the most refractory ones. Fractionation of arsenic in sediments from two mines in Asturias were studied, La Soterrana and Los Rueldos. Sediments from La Soterrana showed high levels of arsenic in the non-residual phases, indicating that the majority of arsenic has an anthropogenic origin. By contrast, in sediments from Los Rueldos most of the arsenic is concentrated in the residual phase, indicating that this element remains bound to very refractory primary minerals, as is also demonstrated by the strong correlation of arsenic fractionation and the fractionation of elements present in refractory minerals, such as iron, aluminum and titanium. (Author) 51 refs.

  3. Potentially toxic element fractionation in technosoils using two sequential extraction schemes

    OpenAIRE

    Qasim, Bashar; Motelica-Heino, Mikael

    2014-01-01

    This study reports the chemical fractionation of several potentially toxic elements (Zn, Pb, Cd, As, and Sb) in contaminated technosoils of two former smelting and mining areas using two sequential extraction schemes. The extraction schemes used in this study were the Tessier's scheme and a modified BCR scheme. The fractions were rearranged into four equivalent fractions defined as acid soluble, reducible, oxidizable, and residual to compare the results obtained from two sequential extraction...

  4. Speciation of heavy metals in untreated sewage sludge by using microwave assisted sequential extraction procedure

    International Nuclear Information System (INIS)

    A fast microwave assisted extraction procedure was developed and optimized for their eventual exploitation in the three-stage sequential extraction procedure proposed by modified BCR protocol (the community Bureau of Reference now the European Union 'Measurement and Testing Programme'). The effects of the microwave treatment on the extraction of Cd, Cr, Cu, Ni, Pb and Zn from untreated sewage sludge collected from Hyderabad city (Pakistan) were compared with those obtained from sequential BCR extraction procedure. In sequential BCR method, each extraction step takes 16 h, where as with the use of compromised microwave conditions, extraction steps could be completed in about 120 s, for each step, respectively. Extractable Cd, Cr, Pb and Ni obtained by both comparable methodologies were measured by electrothermal atomic absorption spectrometry (ETAAS), while for Cu and Zn flame atomic absorption spectrometry (FAAS) was used. The validations of both extraction techniques were compared by the analysis of certified reference material of soil amended with sewage sludge (BCR 483). The results of the partitioning study of untreated waste water sewage sludge, indicate that more easily mobilized forms (step 1) were predominant for Cd, Ni and Zn (28.3, 28.4 and 43.7%), in contrast, the largest amount of Cd and Pb (66.4 and 72.8%) was associated with the iron/manganese oxide while Cr and Ni (71.2 and 38.7%) in organic matter/sulphide fractions. The overall metal recoveries in steps 1-3 (excluding residual step) were 95.3-104% of those obtained with the sequential BCR protocol. The accuracy of the proposed microwave extraction method (expressed as %R.S.D.) was lower than 10% for all metals

  5. Speciation of heavy metals in sediment by conventional, ultrasound and microwave assisted single extraction methods: A comparison with modified sequential extraction procedure

    International Nuclear Information System (INIS)

    Sequential extraction procedure proposed by the European Standards, Measurements and Testing (SM and T) Program, formerly the Community Bureau of Reference (BCR), has been applied for the heavy metals (HMs) partitioning in fresh water lake sediment samples. The results obtained by conventional sequential extraction BCR method (SEB) for Cd, Cu, Cr, Ni, Pb and Zn were compared with those estimated from three alternative single extractions, conventional (CSE), ultrasonic (USE) and microwave assisted (MSE), using identical operating conditions applied in each individual BCR fraction and validated by the CRM BCR 701. Extractable HMs contents obtained by all compared methodologies were measured by atomic absorption spectrometery. With the use of compromised sonication and microwave conditions, steps 1-3 of the sequential extraction (excluding the hydrogen peroxide digestion in step 3) could be completed between 15-30 min using ultrasonic bath, while 60-120 s were required for MSE. The total extractable metal contents obtained by three single extractions ranged from 75.1% to 114.0% except Cr in first step, which was extracted (125.3%) by MSE method as compared to those obtained by SEB procedure. The precision of the proposed BCR single extraction methods (expressed as RSD%) was found in the range of (3.99-9.6%) for all metals

  6. Sequential extraction applied to Peruibe black mud, SP, Brazil

    International Nuclear Information System (INIS)

    The Peruibe Black mud is used in therapeutic treatments such as psoriasis, peripheral dermatitis, acne and seborrhoea, as well as in the treatment of myalgia, arthritis, rheumatism and non-articular processes. Likewise other medicinal clays, it may not be free from possible adverse health effects due to possible hazardous minerals leading to respiratory system occurrences and other effects, caused by the presence of toxic elements. Once used for therapeutic purposes, any given material should be fully characterized and thus samples of Peruibe black mud were analyzed to determine physical and chemical properties: moisture content, organic matter and loss on ignition; pH, particle size, cation exchange capacity and swelling index. The elemental composition was determined by Neutron Activation Analysis, Atomic Absorption Graphite Furnace and X-ray fluorescence; the mineralogical composition was determined by X-ray diffraction. Another tool widely used to evaluate the behavior of trace elements, in various environmental matrices, is the sequential extraction. Thus, a sequential extraction procedure was applied to fractionate the mud in specific geochemical forms and verify how and how much of the elements may be contained in it. Considering the several sequential extraction procedures, BCR-701 method (Community Bureau of Reference) was used since it is considered the most reproducible among them. A simple extraction with an artificial sweat was, also, applied in order to verify which components are potentially available for absorption by the patient skin during the topical treatment. The results indicated that the mud is basically composed by a silty-clay material, rich in organic matter and with good cation exchange capacity. There were no significant variations in mineralogy and elemental composition of both, in natura and mature mud forms. The analysis by sequential extraction and by simple extraction indicated that the elements possibly available in larger

  7. Solid phase speciation of arsenic by sequential extraction in standard reference materials and industrially contaminated soil samples

    Energy Technology Data Exchange (ETDEWEB)

    Herreweghe, Samuel van; Swennen, Rudy; Vandecasteele, Carlo; Cappuyns, Valerie

    2003-04-01

    Leaching experiments, a mineralogical survey and larger samples are preferred when arsenic is present as discrete mineral phases. - Availability, mobility, (phyto)toxicity and potential risk of contaminants is strongly affected by the manner of appearance of elements, the so-called speciation. Operational fractionation methods like sequential extractions have been applied for a long time to determine the solid phase speciation of heavy metals since direct determination of specific chemical compounds can not always be easily achieved. The three-step sequential extraction scheme recommended by the BCR and two extraction schemes based on the phosphorus-like protocol proposed by Manful (1992, Occurrence and Ecochemical Behaviours of Arsenic in a Goldsmelter Impacted Area in Ghana, PhD dissertation, at the RUG) were applied to four standard reference materials (SRM) and to a batch of samples from industrially contaminated sites, heavily contaminated with arsenic and heavy metals. The SRM 2710 (Montana soil) was found to be the most useful reference material for metal (Mn, Cu, Zn, As, Cd and Pb) fractionation using the BCR sequential extraction procedure. Two sequential extraction schemes were developed and compared for arsenic with the aim to establish a better fractionation and recovery rate than the BCR-scheme for this element in the SRM samples. The major part of arsenic was released from the heavily contaminated samples after NaOH-extraction. Inferior extraction variability and recovery in the heavily contaminated samples compared to SRMs could be mainly contributed to subsample heterogeneity.

  8. Solid phase speciation of arsenic by sequential extraction in standard reference materials and industrially contaminated soil samples

    International Nuclear Information System (INIS)

    Leaching experiments, a mineralogical survey and larger samples are preferred when arsenic is present as discrete mineral phases. - Availability, mobility, (phyto)toxicity and potential risk of contaminants is strongly affected by the manner of appearance of elements, the so-called speciation. Operational fractionation methods like sequential extractions have been applied for a long time to determine the solid phase speciation of heavy metals since direct determination of specific chemical compounds can not always be easily achieved. The three-step sequential extraction scheme recommended by the BCR and two extraction schemes based on the phosphorus-like protocol proposed by Manful (1992, Occurrence and Ecochemical Behaviours of Arsenic in a Goldsmelter Impacted Area in Ghana, PhD dissertation, at the RUG) were applied to four standard reference materials (SRM) and to a batch of samples from industrially contaminated sites, heavily contaminated with arsenic and heavy metals. The SRM 2710 (Montana soil) was found to be the most useful reference material for metal (Mn, Cu, Zn, As, Cd and Pb) fractionation using the BCR sequential extraction procedure. Two sequential extraction schemes were developed and compared for arsenic with the aim to establish a better fractionation and recovery rate than the BCR-scheme for this element in the SRM samples. The major part of arsenic was released from the heavily contaminated samples after NaOH-extraction. Inferior extraction variability and recovery in the heavily contaminated samples compared to SRMs could be mainly contributed to subsample heterogeneity

  9. Assessment of chromium biostabilization in contaminated soils using standard leaching and sequential extraction techniques

    International Nuclear Information System (INIS)

    The iron reducing microorganism Desulfuromonas palmitatis was evaluated as potential biostabilization agent for the remediation of chromate contaminated soils. D. palmitatis were used for the treatment of soil samples artificially contaminated with Cr(VI) at two levels, i.e. 200 and 500 mg kg-1. The efficiency of the treatment was evaluated by applying several standard extraction techniques on the soil samples before and after treatment, such as the EN12457 standard leaching test, the US EPA 3060A alkaline digestion method and the BCR sequential extraction procedure. The water soluble chromium as evaluated with the EN leaching test, was found to decrease after the biostabilization treatment from 13 to less than 0.5 mg kg-1 and from 120 to 5.6 mg kg-1 for the soil samples contaminated with 200 and 500 mg Cr(VI) per kg soil respectively. The BCR sequential extraction scheme, although not providing accurate estimates about the initial chromium speciation in contaminated soils, proved to be a useful tool for monitoring the relative changes in element partitioning, as a consequence of the stabilization treatment. After bioreduction, the percentage of chromium retained in the two least soluble BCR fractions, i.e. the 'oxidizable' and 'residual' fractions, increased from 54 and 73% to more than 96% in both soils

  10. Application of a procedure of sequential extraction for the determination of metals weighed in silt of the Almendares rivers

    International Nuclear Information System (INIS)

    The study of the chemical forms of heavy metals in sediments (Solid Speciation) was done by sequential extractions. A process of 3 stages sequential extraction from Almendares River sediments was applied, to determine the specification of Cd, Cu, Ni, Pb and Zn following a protocol proposed by the Bureau Community of Reference (BCR) The relation between the percentage of metal extracted in each fraction and the contents of carbonates, manganese and iron oxides, and organic matter and silice is studied. The extracts were analyzed by flame AAE. No any matrix interference were observed

  11. Heavy Metal and Trace Metal Analysis in Soil by Sequential Extraction: A Review of Procedures

    Directory of Open Access Journals (Sweden)

    Amanda Jo Zimmerman

    2010-01-01

    Full Text Available Quantification of heavy and trace metal contamination in soil can be arduous, requiring the use of lengthy and intricate extraction procedures which may or may not give reliable results. Of the many procedures in publication, some are designed to operate within specific parameters while others are designed for more broad application. Most procedures have been modified since their inception which creates ambiguity as to which procedure is most acceptable in a given situation. For this study, the Tessier, Community Bureau of Reference (BCR, Short, Galán, and Geological Society of Canada (GCS procedures were examined to clarify benefits and limitations of each. Modifications of the Tessier, BCR, and GCS procedures were also examined. The efficacy of these procedures is addressed by looking at the soils used in each procedure, the limitations, applications, and future of sequential extraction.

  12. Comparison of single and sequential extraction procedures for the study of rare earth elements remobilisation in different types of soils

    International Nuclear Information System (INIS)

    With the continual increase in the utilisation of rare earth elements (REE) for industrial and agricultural purposes, research into the environmental and biogeochemical behaviour of REE had attracted much interest in recent times. This study principally describes the distribution of REE in four different types of soils like lateritic soil (S-1), in situ natural soil (S-2), soil contaminated by mining activity (S-3) and accidentally polluted soil (S-4) utilizing the optimised BCR sequential extraction procedure and partial extractions with various types of single extractants such as unbuffered salt solutions 0.1 M NaNO3, 0.01 M CaCl2, 1 M NH4NO3; complexing agents 0.005 M DTPA and 0.05 M EDTA; acid solutions 0.43 M CH3COOH and 1 M HCl. Comparison of the sum of the four BCR fractions, which included an aqua regia attack on the residue, with the pseudo-total aqua regia digest values to assess the accuracy of the BCR partioning approach has been undertaken. Partial extraction results with several single extractants have also been reported for all the REE elements including yttrium which have been analysed by the optimised BCR procedure. Results obtained after 24 h extraction with each of the single extractant have also been discussed. The extraction with 1 M HCl during 24 h yielded similar quantities of REE as those released under the combined steps of 1, 2 and 3 of the BCR sequential extraction for all the four different type of soil samples indicating that this reagent can be used successfully to estimate the total extractable contents of REE in various types of soil samples.

  13. Evaluating Specificity of Sequential Extraction for Chemical Forms of Lead in Artificially-contaminated and Field-contaminated Soils

    OpenAIRE

    Tai, Yiping; McBride, Murray B.

    2013-01-01

    In the present study, we evaluate a commonly employed a modified Bureau Communautaire de Référence (BCR test) 3-step sequential extraction procedure for its ability to distinguish forms of solid-phase Pb in soils with different sources and histories of contamination. When the modified BCR test was applied to mineral soils spiked with three forms of Pb (pyromorphite, hydrocerussite and nitrate salt), the added Pb was highly susceptible to dissolution in the operationally-defined “reducible” or...

  14. Use of Sequential, Single and Kinetic Extractive Schemes to Assess Cadmium (Cd) and Lead (Pb) Availability in Vietnamese Urban Soils

    OpenAIRE

    Nastaran Manouchehri; Thi Minh Loi Nguyen; Stéphane Besancon; Lan Anh Le; Alain Bermond

    2014-01-01

    Modified BCR sequential extraction, single equilibrium-based EDTA extraction and kinetic fractionation were used for estimating the Pb and Cd availability in a series of soil samples from 3 sites located in urban areas of Hanoi (Vietnam). These schemes were compared to identify a simple, rapid and cheap protocol for routine estimation of Pb and Cd remobilizable fraction and the related potential risk. The comparison of these three approaches revealed their convergence in terms of mobility pat...

  15. Application of a Three-Stage Sequential Extraction Procedure for the Determination of Extractable Metal Contents in Highway Soils

    OpenAIRE

    TOKALIOĞLU, Şerife; BİROL, Şenol KARTAL and Gökhan

    2003-01-01

    A sequential extraction procedure, a three-step protocol proposed by the Standards, Measurements and Testing programme (SM & T--formerly BCR) of the European Union, was applied to soil samples for the determination of metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn). This procedure provides measurements of extractable metals from media such as acetic acid (0.11 mol L-1), hydroxylammonium chloride (0.1 mol L-1) and hydrogen peroxide (8.8 mol L-1) plus ammonium acetate (1 mol L - 1), ...

  16. Potentially toxic element fractionation in technosoils using two sequential extraction schemes.

    Science.gov (United States)

    Qasim, Bashar; Motelica-Heino, Mikael

    2014-04-01

    This study reports the chemical fractionation of several potentially toxic elements (Zn, Pb, Cd, As, and Sb) in contaminated technosoils of two former smelting and mining areas using two sequential extraction schemes. The extraction schemes used in this study were the Tessier's scheme and a modified BCR scheme. The fractions were rearranged into four equivalent fractions defined as acid soluble, reducible, oxidizable, and residual to compare the results obtained from two sequential extraction schemes. Surface soils were samples from a waste landfill contaminated with Zn, Pb, and Cd located at Mortagne-du-Nord (MDN; North France) and from a settling basin contaminated with PTE such as As, Pb, and Sb located at La Petite Faye (LPF; Limoges, France). The study of the Zn, Pb, Cd, As, and Sb partitioning in the acid soluble, reducible, oxidizable, and residual fractions of the technosoils revealed that Zn, Cd, and Pb were mainly associated with the acid soluble and reducible fractions for MDN site, while As, Sb, and Pb were associated with residual fraction for LPF site. Fractionation results indicate that the percentages of Zn, Pb, Cd, As, and Sb extracted in Fe-Mn oxide bound fraction of Tessier's scheme were always higher than those extracted by modified BCR scheme. This may be attributed to the stronger Tessier's scheme conditions used to extract this fraction. In contrast the percentages of Zn, Pb, Cd, As, and Sb extracted in the organic fraction of the modified BCR scheme were always higher than those of the Tessier's scheme. The order of mobility of PTE was as follows: Cd > Zn > Pb in MDN site and As > Sb > Pb in LPF site. PTE were distributed in all soil fractions, with the most relevant enrichments in extractable and residual fractions. A significant amount of Cd, Pb, and Zn were rather mobile, which suggests that these elements can be readily available to plants and soil organisms. PMID:24371008

  17. A comparison of an optimised sequential extraction procedure and dilute acid leaching of elements in anoxic sediments, including the effects of oxidation on sediment metal partitioning

    International Nuclear Information System (INIS)

    The effect of oxidation of anoxic sediment upon the extraction of 13 elements (Cd, Sn, Sb, Pb, Al, Cr, Mn, Fe, Co, Ni, Cu, Zn, As) using the optimised Community Bureau of Reference of the European Commission (BCR) sequential extraction procedure and a dilute acid partial extraction procedure (4 h, 1 mol L-1 HCl) was investigated. Elements commonly associated with the sulfidic phase, Cd, Cu, Pb, Zn and Fe exhibited the most significant changes under the BCR sequential extraction procedure. Cd, Cu, Zn, and to a lesser extent Pb, were redistributed into the weak acid extractable fraction upon oxidation of the anoxic sediment and Fe was redistributed into the reducible fraction as expected, but an increase was also observed in the residual Fe. For the HCl partial extraction, sediments with moderate acid volatile sulfide (AVS) levels (1-100 μmol g-1) showed no significant difference in element partitioning following oxidation, whilst sediments containing high AVS levels (>100 μmol g-1) were significantly different with elevated concentrations of Cu and Sn noted in the partial extract following oxidation of the sediment. Comparison of the labile metals released using the BCR sequential extraction procedure (ΣSteps 1-3) to labile metals extracted using the dilute HCl partial extraction showed that no method was consistently more aggressive than the other, with the HCl partial extraction extracting more Sn and Sb from the anoxic sediment than the BCR procedure, whilst the BCR procedure extracted more Cr, Co, Cu and As than the HCl extraction

  18. Sequential extraction of uranium metal contamination

    International Nuclear Information System (INIS)

    Samples of uranium contaminated dirt collected from the dirt floor of an abandoned metal rolling mill were analyzed for uranium using a sequential extraction protocol involving a series of five increasingly aggressive solvents. The quantity of uranium extracted from the contaminated dirt by each reagent can aid in predicting the fate and transport of the uranium contamination in the environment. Uranium was separated from each fraction using anion exchange, electrodeposition and analyzed by alpha spectroscopy analysis. Results demonstrate that approximately 77 % of the uranium was extracted using NH4Ac in 25 % acetic acid. (author)

  19. Correlation between the Results of Sequential Extraction and Effectiveness of Immobilization Treatment of Lead- and Cadmium-Contaminated Sediment

    OpenAIRE

    Milena B. Dalmacija; Miljana D. J. Prica; Dalmacija, Bozo D.; Roncevic, Srdjan D.; Rajic, Ljiljana M.

    2010-01-01

    The assessment of the quality of sediment from the Great Backi Canal (Serbia), based on the pseudo-total lead (Pb) and cadmium (Cd) content according to the corresponding Dutch standards and Canadian guidelines, showed its severe contamination with these two metals. A microwave-assisted BCR (Community Bureau of Reference of the Commission of the European Union) sequential extraction procedure was employed to assess their potential mobility and risk to the aquatic environment. Comparison of th...

  20. Evaluating the mobile heavy metal pool in soak-away sediment, road dust and soil through sequential extraction and isotopic exchange.

    Science.gov (United States)

    Kumar, Manish; Furumai, Hiroaki; Kurisu, Futoshi; Kasuga, Ikuro

    2010-01-01

    Selective sequential dissolution (SSD) and isotopic dilution are two most commonly applied techniques for the measurement of mobile fraction of heavy metal present in the urban environment. This work examined the compliance between SSD proposed by the Community Bureau of Reference (BCR) and isotopic dilution technique (IDT) for determination of mobile pool of heavy metal contained in soakaway sediment, road dust, and soil sample. Heavy metals (Cu, Zn, Cd and Pb) were fractionated using the three-stage BCR protocol, while isotopically exchangeable metal concentrations (E-value) were investigated through isotopic tracers (¹¹¹Cd, ⁶⁵Cu, ²⁰⁷Pb and ⁶⁶Zn). In general, total contamination level, E-value and BCR exchangeable fractions of different samples followed the similar order of road dust > soakaway sediment > soil. Results revealed that the E-value exceeded the BCR exchangeable fraction in all samples. In addition, the first three fractions of BCR which have potential to become mobile under certain environmental conditions were collectively termed as "potential mobile pool" and compared with E-value. It was concluded that metal extracted by weak acid underestimates the exchangeable fraction while the potential mobile pool extracted by three reagents overestimates the real mobile forms of heavy metals. However, better mobility characteristics of heavy metals can be assessed by coupling information obtained through sequential extraction and isotopic exchange. PMID:20729597

  1. Evaluation of uranium and arsenic retention by soil from a low level radioactive waste management site using sequential extraction

    Energy Technology Data Exchange (ETDEWEB)

    Evans, G.J.; Dhoum, R.T. [Department of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College St. Toronto (Canada)

    1998-06-01

    The European Communities Bureau of Reference (BCR) and Chunguo sequential extraction procedures were employed to evaluate the retention of U and As by a soil contaminated with low level radioactive waste. Modifications were made to both procedures to optimize the measurement of soil and extractant samples using epithermal neutron activation analysis. Based on the BCR procedure, approximately 20% of the U appeared to be bound to the carbonate fraction, 10% to the mineral oxide fraction and 20% to the organic fraction. In the case of As, the majority was strongly bound in the residue fraction. The results obtained with the Chunguo procedure supported these conclusions to some extent, in that the majority of the U and As was found to be strongly bound to thesoil in a manner consistent with its presence in the residue fraction. (Copyright (c) 1998 Elsevier Science B.V., Amsterdam. All rights reserved.)

  2. Evaluation of uranium and arsenic retention by soil from a low level radioactive waste management site using sequential extraction

    International Nuclear Information System (INIS)

    The European Communities Bureau of Reference (BCR) and Chunguo sequential extraction procedures were employed to evaluate the retention of U and As by a soil contaminated with low level radioactive waste. Modifications were made to both procedures to optimize the measurement of soil and extractant samples using epithermal neutron activation analysis. Based on the BCR procedure, approximately 20% of the U appeared to be bound to the carbonate fraction, 10% to the mineral oxide fraction and 20% to the organic fraction. In the case of As, the majority was strongly bound in the residue fraction. The results obtained with the Chunguo procedure supported these conclusions to some extent, in that the majority of the U and As was found to be strongly bound to the soil in a manner consistent with its presence in the residue fraction. (Copyright (c) 1998 Elsevier Science B.V., Amsterdam. All rights reserved.)

  3. Comparison of three-stage sequential extraction and toxicity characteristic leaching tests to evaluate metal mobility in mining wastes

    International Nuclear Information System (INIS)

    Abandoned mining sites contain residues from ore processing operations that are characterised by high concentrations of heavy metals. The form in which a metal exists strongly influences its mobility and, thus, the effects on the environment. Operational methods of speciation analysis, such as the use of sequential extraction procedures, are commonly applied. In this work, the modified three-stage sequential extraction procedure proposed by the BCR (now the Standards, Measurements and Testing Programme) was applied for the fractionation of Ni, Zn, Pb and Cd in mining wastes from old Pb-Zn mining areas located in the Val d'Aran (NE Spain) and Cartagena (SE Spain). Analyses of the extracts were performed by inductively coupled plasma atomic emission spectrometry and electrothermal atomic absorption spectrometry. The procedure was evaluated by using a certified reference material, BCR-701. The results of the partitioning study indicate that more easily mobilised forms (acid exchangeable) were predominant for Cd and Zn, particularly in the sample from Cartagena. In contrast, the largest amount of lead was associated with the iron and manganese oxide fractions. On the other hand, the applicability of lixiviation tests commonly used to evaluate the leaching of toxic species from landfill disposal (US-EPA Toxicity Characteristic Leaching Procedure and DIN 38414-S4) to mining wastes was also investigated and the obtained results compared with the information on metal mobility derivable from the application of the three-stage sequential extraction procedure

  4. Arsenic fractionation in agricultural soil using an automated three-step sequential extraction method coupled to hydride generation-atomic fluorescence spectrometry

    International Nuclear Information System (INIS)

    Highlights: • A fully automated flow-based modified-BCR extraction method was developed to evaluate the extractable As of soil. • The MSFIA–HG-AFS system included an UV photo-oxidation step for organic species degradation. • The accuracy and precision of the proposed method were found satisfactory. • The time analysis can be reduced up to eight times by using the proposed flow-based BCR method. • The labile As (F1 + F2) was <50% of total As in soil samples from As-contaminated-mining zones. - Abstract: A fully automated modified three-step BCR flow-through sequential extraction method was developed for the fractionation of the arsenic (As) content from agricultural soil based on a multi-syringe flow injection analysis (MSFIA) system coupled to hydride generation-atomic fluorescence spectrometry (HG-AFS). Critical parameters that affect the performance of the automated system were optimized by exploiting a multivariate approach using a Doehlert design. The validation of the flow-based modified-BCR method was carried out by comparison with the conventional BCR method. Thus, the total As content was determined in the following three fractions: fraction 1 (F1), the acid-soluble or interchangeable fraction; fraction 2 (F2), the reducible fraction; and fraction 3 (F3), the oxidizable fraction. The limits of detection (LOD) were 4.0, 3.4, and 23.6 μg L−1 for F1, F2, and F3, respectively. A wide working concentration range was obtained for the analysis of each fraction, i.e., 0.013–0.800, 0.011–0.900 and 0.079–1.400 mg L−1 for F1, F2, and F3, respectively. The precision of the automated MSFIA–HG-AFS system, expressed as the relative standard deviation (RSD), was evaluated for a 200 μg L−1 As standard solution, and RSD values between 5 and 8% were achieved for the three BCR fractions. The new modified three-step BCR flow-based sequential extraction method was satisfactorily applied for arsenic fractionation in real agricultural soil samples from

  5. Arsenic fractionation in agricultural soil using an automated three-step sequential extraction method coupled to hydride generation-atomic fluorescence spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Rosas-Castor, J.M. [Universidad Autónoma de Nuevo León, UANL, Facultad de Ciencias Químicas, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, C.P. 66451 Nuevo León (Mexico); Group of Analytical Chemistry, Automation and Environment, University of Balearic Islands, Cra. Valldemossa km 7.5, 07122 Palma de Mallorca (Spain); Portugal, L.; Ferrer, L. [Group of Analytical Chemistry, Automation and Environment, University of Balearic Islands, Cra. Valldemossa km 7.5, 07122 Palma de Mallorca (Spain); Guzmán-Mar, J.L.; Hernández-Ramírez, A. [Universidad Autónoma de Nuevo León, UANL, Facultad de Ciencias Químicas, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, C.P. 66451 Nuevo León (Mexico); Cerdà, V. [Group of Analytical Chemistry, Automation and Environment, University of Balearic Islands, Cra. Valldemossa km 7.5, 07122 Palma de Mallorca (Spain); Hinojosa-Reyes, L., E-mail: laura.hinojosary@uanl.edu.mx [Universidad Autónoma de Nuevo León, UANL, Facultad de Ciencias Químicas, Cd. Universitaria, San Nicolás de los Garza, Nuevo León, C.P. 66451 Nuevo León (Mexico)

    2015-05-18

    Highlights: • A fully automated flow-based modified-BCR extraction method was developed to evaluate the extractable As of soil. • The MSFIA–HG-AFS system included an UV photo-oxidation step for organic species degradation. • The accuracy and precision of the proposed method were found satisfactory. • The time analysis can be reduced up to eight times by using the proposed flow-based BCR method. • The labile As (F1 + F2) was <50% of total As in soil samples from As-contaminated-mining zones. - Abstract: A fully automated modified three-step BCR flow-through sequential extraction method was developed for the fractionation of the arsenic (As) content from agricultural soil based on a multi-syringe flow injection analysis (MSFIA) system coupled to hydride generation-atomic fluorescence spectrometry (HG-AFS). Critical parameters that affect the performance of the automated system were optimized by exploiting a multivariate approach using a Doehlert design. The validation of the flow-based modified-BCR method was carried out by comparison with the conventional BCR method. Thus, the total As content was determined in the following three fractions: fraction 1 (F1), the acid-soluble or interchangeable fraction; fraction 2 (F2), the reducible fraction; and fraction 3 (F3), the oxidizable fraction. The limits of detection (LOD) were 4.0, 3.4, and 23.6 μg L{sup −1} for F1, F2, and F3, respectively. A wide working concentration range was obtained for the analysis of each fraction, i.e., 0.013–0.800, 0.011–0.900 and 0.079–1.400 mg L{sup −1} for F1, F2, and F3, respectively. The precision of the automated MSFIA–HG-AFS system, expressed as the relative standard deviation (RSD), was evaluated for a 200 μg L{sup −1} As standard solution, and RSD values between 5 and 8% were achieved for the three BCR fractions. The new modified three-step BCR flow-based sequential extraction method was satisfactorily applied for arsenic fractionation in real agricultural

  6. Investigations of Cu, Pb and Zn partitioning by sequential extraction in harbour sediments after electrodialytic remediation

    DEFF Research Database (Denmark)

    Kirkelund, Gunvor Marie; Ottosen, Lisbeth M.; Villumsen, Arne

    2010-01-01

    Electrodialytic remediation was used to remove Cu, Zn and Pb from three different contaminated harbour sediments. Electrodialytic experiments lasting 2 and 4 weeks were performed and 48-86% Cu, 74-90% Zn and 62-88% Pb were removed from the different sediments and the removal increased with longer...... remediation time. A three step sequential extraction scheme (BCR), with an extra residual step, was used to evaluate the heavy metal distribution in the sediments before and after electrodialytic remediation. Cu was mainly associated with the oxidisable phase of the sediment, both before and after remediation....... Zn and Pb were found in the exchangeable and reducible phases before remediation. Zn was still found in the exchangeable and reducible phases after remediation, whereas most Pb was removed from these phases during electrodialytic remediation....

  7. Comparison of two sequential extraction protocols for fractionation of natural radionuclides in soil samples

    International Nuclear Information System (INIS)

    Revised BCR (Bureau Communautaire de Reference) and the Schultz modification of Tessier's sequential extraction protocols are compared for fractionation of uranium, thorium and radium in soil samples. Six soil samples were collected near to the uranium mill tailings waste pile and some of them had enhanced levels of natural radionuclides. The samples were processed by both protocols and the radionuclide content assayed by alpha spectrometric determination. The analysis revealed that results obtained by the two protocols are not fully comparable as data are mostly protocol- and element-dependent. Nevertheless, general conclusions about potential source of the particular radionuclide, which could be drawn from the specific study carried out, are mostly similar for both protocols. (orig.)

  8. A sequential extraction procedure to evaluate the mobilization behavior of rare earth elements in soils and tailings materials.

    Science.gov (United States)

    Mittermüller, Marc; Saatz, Jessica; Daus, Birgit

    2016-03-01

    A novel sequential extraction method for evaluation of the mobilization behavior of rare earth elements in soils and mine tailings materials is presented. The sequence consists of the following four steps: 0.05 mol L(-1) calcium nitrate (easily soluble and ion exchange fraction), 0.1 mol L(-1) citric acid (fraction mobilized by complexation and carbonate bound), 0.05 mol L(-1) hydroxylamine hydrochloride (pH = 2) (reducible fraction), 1.4 mol L(-1) nitric acid (acid soluble fraction). The procedure was optimized with a certified soil material and a mine tailings material and was applied to eight samples of a soil profile. The different results obtained by using either the developed method or the widespread used BCR-Method for comparison are discussed. There were clear advantages using the newly created sequential extraction procedure in getting more detailed information about the bioavailable fraction and a fraction addressing REE phosphates. PMID:26766351

  9. Element fractionation by sequential extraction in a soil with high carbonate content

    International Nuclear Information System (INIS)

    The influence of carbonate and other buffering substances in soils on the results of a 3-step sequential extraction procedure (BCR) used for metal fractionation was investigated. Deviating from the original extraction scheme, where the extracts are analysed only for a limited number of metals, almost all elements in the soils were quantified by X-ray fluorescence spectroscopy, in the initial samples as well as in the residues of all extraction steps. Additionally, the mineral contents were determined by X-ray diffractometry. Using this methodology, it was possible to correlate changes in soil composition caused by the extraction procedure with the release of elements. Furthermore, the pH values of all extracts were monitored, and certain extraction steps were repeated until no significant pH-rise occurred. A soil with high dolomite content (27%) and a carbonate free soil were extracted. Applying the original BCR-sequence to the calcareous soil, carbonate was found in the residues of the first two steps and extract pH-values rose by around two units in the first and second step, caused mainly by carbonate dissolution. This led to wrong assignment of the carbonate elements Ca, Mg, Sr, Ba, and also to decreased desorption and increased re-adsorption of ions in those steps. After repetition of the acetic acid step until extract pH remained low, the carbonate was completely destroyed and the distributions of the elements Ca, Mg, Sr, Ba as well as those of Co, Ni, Cu, Zn and Pb were found to be quite different to those determined in the original extraction. Furthermore, it could be shown that the effectiveness of the reduction process in step two was reduced by increasing pH: Fe oxides were not significantly attacked by the repeated acetic acid treatments, but a 10-fold amount of Fe was mobilized by hydroxylamine hydrochloride after complete carbonate destruction. On the other hand, only small amounts of Fe were released anyway. Even repeated reduction steps did not

  10. 利用 BCR法和 Maiz法提取蔗田土壤中重金属的研究%Study on Extraction of Heavy Metals from Soil of Sugarcane Field by BCR Method and Maiz Method

    Institute of Scientific and Technical Information of China (English)

    王晓飞; 许桂苹; 洪欣; 陈丽君; 梁晓曦

    2015-01-01

    分别采用BCR法和Maiz法两种连续提取法,对蔗田土壤样品中重金属元素Cu、Zn、Pb、Cd和Ni进行了形态分析。结果表明:Cu、Zn、Pb、Cd和Ni均主要以残渣态的形式赋存,具有较低的潜在生物有效性;Pb主要以可还原态或螯合态的形式存在,具有一定的潜在生物有效性;BCR法得到的重金属回收率高于Maiz法的,但是Maiz法测得的有效态Cu、Zn、Pb、Cd和Ni的量均高于BCR法测得的弱酸提取态的量。%The occurrence characteristics of heavy metals Cu, Zn, Pb, Cd and Ni in the soil samples of sugarcane fields in Guangxi were analyzed by using BCR and Maiz sequential extraction procedures respectively.The results showed that Cu, Zn, Pb, Cd and Ni existed mainly in residual fraction, and they had a lower potential bioavailability.Pb existed mainly in reducible fraction or chelated fraction, and it possessed a certain potential bioavailability.In addition, BCR method acquired higher recovery rate of heavy metal than Maiz method, but the quantity of effective-state Cu, Zn, Pb, Cd and Ni measured by Maiz method was all higher than that of weak-acid-extractable-state Cu, Zn, Pb, Cd and Ni measured by BCR method.

  11. Fractionation of potentially toxic elements in urban soils from five European cities by means of a harmonised sequential extraction procedure

    International Nuclear Information System (INIS)

    The revised (four-step) BCR sequential extraction procedure has been applied to fractionate the chromium, copper, iron, manganese, nickel, lead and zinc contents in urban soil samples from public-access areas in five European cities. A preliminary inter-laboratory comparison was conducted and showed that data obtained by different laboratories participating in the study were sufficiently harmonious for comparisons to be made between cities and land types (e.g. parks, roadside, riverbanks, etc.). Analyte recoveries by sequential extraction, with respect to direct aqua regia digestion, were generally acceptable (100 ± 15%). Iron, nickel and, at most sites, chromium were found mainly in association with the residual phase of the soil matrix. Copper was present in the reducible, oxidisable and residual fractions, whilst zinc was found in all four sequential extracts. Manganese was strongly associated with reducible material as, in some cities, was lead. This is of concern because high lead concentrations were present in some soils (>500 mg kg-1) and the potential exists for remobilisation under reducing conditions. As would be expected, extractable metal contents were generally highest in older, more heavily industrialised cities. Copper, lead and zinc showed marked (and often correlated) variations in concentrations between sites within the same city whereas manganese and, especially, iron, did not. No overall relationships were, however, found between analyte concentrations and land use, nor between analyte partitioning and land use

  12. Preparation of protein samples for gel electrophoresis by sequential extraction

    Institute of Scientific and Technical Information of China (English)

    钟伯雄; 翁宏飚; 等

    2002-01-01

    Since preparation and solubilization of protein samples are crucial factors in proteome research,the authors established a sequential extraction technique to prepare protein samples from the body wall of the 5th instar larvae of silkworm.Bombyx mori.Two kinds of protein samples were obtained from the body wall using the method.Between the two types of samples only about 15% proteins were identical;the majority were different,indicating that more species of proteins could be obtained with the sequential extraction method;which will be useful for preparation of protein samples for proteome study.

  13. Phenolic Content and Antioxidant Activity of Hibiscus cannabinus L. Seed Extracts after Sequential Solvent Extraction

    OpenAIRE

    Shahid Iqbal; Maznah Ismail; Noordin Mohd Yusri; Kim Wei Chan

    2012-01-01

    A sequential solvent extraction scheme was employed for the extraction of antioxidant compounds from kenaf (Hibiscus cannabinus L.) seeds. Yield of extracts varied widely among the solvents and was the highest for hexane extract (16.6% based on dry weight basis), while water extract exhibited the highest total phenolic content (18.78 mg GAE/g extract), total flavonoid content (2.49 mg RE/g extract), and antioxidant activities (p < 0.05). DPPH and hydroxyl radical scavenging, β...

  14. Sequential extraction applied to Peruibe black mud, SP, Brazil; Extracao sequencial aplicada a lama negra de Peruibe

    Energy Technology Data Exchange (ETDEWEB)

    Torrecilha, Jefferson Koyaishi

    2014-07-01

    The Peruibe Black mud is used in therapeutic treatments such as psoriasis, peripheral dermatitis, acne and seborrhoea, as well as in the treatment of myalgia, arthritis, rheumatism and non-articular processes. Likewise other medicinal clays, it may not be free from possible adverse health effects due to possible hazardous minerals leading to respiratory system occurrences and other effects, caused by the presence of toxic elements. Once used for therapeutic purposes, any given material should be fully characterized and thus samples of Peruibe black mud were analyzed to determine physical and chemical properties: moisture content, organic matter and loss on ignition; pH, particle size, cation exchange capacity and swelling index. The elemental composition was determined by Neutron Activation Analysis, Atomic Absorption Graphite Furnace and X-ray fluorescence; the mineralogical composition was determined by X-ray diffraction. Another tool widely used to evaluate the behavior of trace elements, in various environmental matrices, is the sequential extraction. Thus, a sequential extraction procedure was applied to fractionate the mud in specific geochemical forms and verify how and how much of the elements may be contained in it. Considering the several sequential extraction procedures, BCR-701 method (Community Bureau of Reference) was used since it is considered the most reproducible among them. A simple extraction with an artificial sweat was, also, applied in order to verify which components are potentially available for absorption by the patient skin during the topical treatment. The results indicated that the mud is basically composed by a silty-clay material, rich in organic matter and with good cation exchange capacity. There were no significant variations in mineralogy and elemental composition of both, in natura and mature mud forms. The analysis by sequential extraction and by simple extraction indicated that the elements possibly available in larger

  15. Fractionation of trace elements in agricultural soils using ultrasound assisted sequential extraction prior to inductively coupled plasma mass spectrometric determination.

    Science.gov (United States)

    Matong, Joseph M; Nyaba, Luthando; Nomngongo, Philiswa N

    2016-07-01

    The main objectives of this study were to determine the concentration of fourteen trace elements and to investigate their distribution as well as a contamination levels in selected agricultural soils. An ultrasonic assisted sequential extraction procedure derived from three-step BCR method was used for fractionation of trace elements. The total concentration of trace elements in soil samples was obtained by total digestion method in soil samples with aqua regia. The results of the extractable fractions revealed that most of the target trace elements can be transferred to the human being through the food chain, thus leading to serious human health. Enrichment factor (EF), geo-accumulation index (Igeo), contamination factor (CF), risk assessment code (RAC) and individual contamination factors (ICF) were used to assess the environmental impacts of trace metals in soil samples. The EF revealed that Cd was enriched by 3.1-7.2 (except in Soil 1). The Igeo results showed that the soils in the study area was moderately contaminated with Fe, and heavily to extremely polluted with Cd. The soil samples from the unplanted field was found to have highest contamination factor for Cd and lowest for Pb. Soil 3 showed a high risk for Tl and Cd with RAC values of greater than or equal to 50%. In addition, Fe, Ni, Cu, V, As, Mo (except Soil 2), Sb and Pb posed low environmental risk. The modified BCR sequential extraction method provided more information about mobility and environmental implication of studied trace elements in the study area. PMID:27058917

  16. Evalution of sequential extractions on dry and wet sediments

    OpenAIRE

    Baeyens, W.; Monteny, F.; Leermakers, M.; BOUILLON, S

    2003-01-01

    A five-step sequential extraction procedure was applied on dried and wet Ballastplaat Scheldt estuary sediments. When wet (fresh) sediments were used, all sample handling up to the 3rd extraction step, inclusive, was carried out under inert atmosphere. The repeatability of the procedure was very good on dry samples. For Fe as for Mn, RSD values are lower than 4%, except for Mn in the fifth extraction step where a spread of 10% is observed. The observed RSDs for Pb are of the same order of mag...

  17. Use of sequential extraction to assess metal partitioning in soils

    International Nuclear Information System (INIS)

    The state of heavy metal pollution and the mobility of Cd, Cu, Ni, Cr, Pb and Zn were studied in three texturally different agricultural soil profiles near a Cu-Ni smelter in Harjavalta, Finland. The pseudo-total concentrations were determined by an aqua regia procedure. Metals were also determined after division into four fractions by sequential extraction with (1) acetic acid (exchangeable and specifically adsorbed metals), (2) a reducing agent (bound to Fe/Mn hydroxides), (3) an oxidizing agent (bound to soil organic matter) and (4) aqua regia (bound to mineral structures). Fallout from the smelter has increased the concentrations of Cd, Cu and Ni in the topsoil, where 75-90% of Cd, 49-72% of Cu and 22-52% of Ni occurred in the first two fractions. Slight Pb and Zn pollution was evident as well. High proportions of mobile Cd, Cu and Ni also deeper in the sandy soil, closest to the smelter, indicated some downward movement of metals. The hydroxide-bound fraction of Pb dominated in almost all soils and horizons, while Ni, Cr and Zn mostly occurred in mineral structures. Aqua regia extraction is usefully supplemented with sequential extraction, particularly in less polluted soils and in soils that exhibit substantial textural differences within the profiles. - Sequential extraction is most useful with soils with low metal pollutant levels

  18. [Extraction characteristics of sequential accelerated solvent extraction for polycyclic aromatic hydrocarbons in environmental mediums].

    Science.gov (United States)

    Ma, Xiao-xuan; Ran, Yong

    2009-12-01

    Polycyclic aromatic hydrocarbons (PAHs) in two soils, two sediments and an shale from the Pearl River Delta were extracted by sequential accelerated solvent extraction (ASE) with each of four different organic solvents for three times. PAHs in the first extract accounts for more than half of their total contents, and toluene displays the best extraction performance among the four employed solvents. For a given sample the source diagnostic ratios of PAHs in sequential ASE with each solvent are very similar, suggesting the validity of those ratios in source judgement by different extraction methods. PMID:20187409

  19. Assessment of a sequential phase extraction procedure for uranium-series isotope analysis of soils and sediments

    International Nuclear Information System (INIS)

    The study of uranium-series (U-series) isotopes in soil and sediment materials has been proposed to quantify rates and timescales of soil production and sediment transport. Previous works have studied bulk soil or sediment material, which is a complex assemblage of primary and secondary minerals and organic compounds. However, the approach relies on the fractionation between U-series isotopes in primary minerals since they were liberated from the parent rock via weathering. In addition, secondary minerals and organic compounds have their own isotopic compositions such that the composition of the bulk material may not reflect that of primary minerals. Hence, there is a need for a sample preparation procedure that allows the isolation of primary minerals in soil or fluvial sediment samples. In this study, a sequential extraction procedure to separate primary minerals from soils and sediments was assessed. The procedure was applied to standard rock sample powders (TML-3 and BCR-2) to test whether it introduced any artefactual radioactive disequilibrium. A new step was introduced to remove the clay-sized fraction (234U/238U) and (230Th/238U) activity ratios of the rock standards occurred during the procedure. Aliquots of soil sample were subjected to the sequential extraction process to test how each step modifies the uranium-series activity ratios and mineralogy. Although no secondary minerals were detected in the unleached soil aliquots, the sequential leaching process removed up to 17% of U and Th and modified their activity ratios by up to 3%. The modification of the activity ratios poses a demand for careful means to avoid redistribution of isotopes back to the residual phase during phase extraction. - Highlights: • We tested a sequential extraction procedure for U-series isotope analysis on powdered rock standards (TML-3 and BCR-2) and a soil sample. • The leaching procedure does not impart any artifactual isotope fractionation to the sample. • Considerable

  20. Sequential extraction of platinum, cisplatin and carboplatin from environmental samples and pre-concentration/separation using vesicular coacervative extraction and determination by continuum source ETAAS.

    Science.gov (United States)

    Meeravali, Noorbasha N; Madhavi, K; Manjusha, R; Kumar, Sunil Jai

    2014-01-01

    A sequential extraction procedure is developed for the separation of trace levels of hexachloroplatinate, cisplatin and carboplatin from soil, which are then, pre-concentrated using a vesicular coacervative cloud point extraction method prior to their determination as platinum by continuum source ETAAS. Sequential extraction of carboplatin, cisplatin and hexachloroplatinate from a specific red soil is achieved by using the 20% HCl, aqua regia at room temperature and by combination of aqua regia and HF with microwave digestion, respectively. The pre-concentration of these species from the extracted solutions is based on the formation of extractable hydrophobic complexes of PtCl₆(2-) anionic species with free cationic head groups solubilizing sites of the Triton X-114 co-surfactant stabilized TOMAC (tri-octyl methyl ammonium chloride) vesicles through electrostatic attraction. This process separates the platinum from bulk aqueous solution into a small vesicular rich phase. The parameters affecting the extraction procedures are optimized. Under the optimized conditions, the achieved pre-concentration factor is 20 and detection limit is 0.5 ng g(-1) for soil and 0.02 ng mL(-1) for water samples. The spiked recoveries of hexachloroplatinate, cisplatin and carboplatin in water and soil extracts in the vesicular coacervative extraction are in the range of 96-102% at 0.5-1 ng mL(-1) with relative standard deviation of 1-3%. The accuracy of the method for platinum determination is evaluated by analyzing CCRMP PTC-1a copper-nickel sulfide concentrate and BCR 723 road dust certified reference materials and the obtained results agreed with the certified values with 95% confidence level of student t-test. The results were also compared to mixed-micelle (MM)-CPE method reported in the literature. PMID:24274268

  1. A proximal point algorithm for sequential feature extraction applications

    OpenAIRE

    Doan, Xuan Vinh; Toh, Kim-Chuan; Vavasis, Stephen

    2011-01-01

    We propose a proximal point algorithm to solve LAROS problem, that is the problem of finding a "large approximately rank-one submatrix". This LAROS problem is used to sequentially extract features in data. We also develop a new stopping criterion for the proximal point algorithm, which is based on the duality conditions of \\eps-optimal solutions of the LAROS problem, with a theoretical guarantee. We test our algorithm with two image databases and show that we can use the LAROS problem to extr...

  2. Electrothermal atomic absorption spectrometric determination of vanadium in extracts of soil and sewage sludge certified reference materials after fractionation by means of the Communities Bureau of Reference modified sequential extraction procedure

    International Nuclear Information System (INIS)

    A modified three-step sequential extraction procedure proposed by the Commission of European Communities Bureau of Reference (BCR) was applied to certified reference materials of three different soil groups (rendzina, luvisol, cambisol) and sewage sludge of different composition originating from a municipal water treatment plant in order to assess potential mobility and the distribution of vanadium in the resulting fractions. Analysis of the extracts was carried out by electrothermal atomic absorption spectrometry with Zeeman background correction using transversely heated graphite atomizers. Extracts showed significant matrix interferences which were overcome by the standard addition technique. The original soil and sludge certified reference materials (CRMs) and the extraction residue from the sequential extraction were decomposed by a mixture of HNO3-HClO4-HF in an open system. The content of V determined after decomposition of the samples was in very good agreement with the certified total values. The accuracy of the sequential extraction procedure was checked by comparing the sum of the vanadium contents in the three fractions and in the extraction residue with the certified total content of V. The amounts of vanadium leached were in good correlation with the certified total contents of V in the CRMs of soils and sewage sludge. In the soils examined, vanadium was present almost entirely in the mineral lattice, while in the sewage sludge samples 9-14% was found in the oxidizable and almost 25% in the reducible fractions. The recovery ranged from 93-106% and the precision (RSD) was below 10%

  3. Utilizing a sequential injection system furnished with an extraction microcolumn as a novel approach for executing sequential extractions of metal species in solid samples

    DEFF Research Database (Denmark)

    Chomchoei, R.; Hansen, Elo Harald; Shiowatana, J.

    2007-01-01

    This communication presents a novel approach to perform sequential extraction of elements in solid samples by using a sequential injection (SI) system incorporating a specially designed extraction microcolumn. Based on the operation of the syringe pump, different modes of extraction are potentially...... feasible, uni-directional and bi-directional flow schemes being used herein. A three-step sequential extraction scheme, using conventionally adopted extractants, was used to evaluate the system by determining Ca, Fe, Mn, Cu, Zn in a soil certified reference material (NIST, SRM 2710). It is demonstrated...... ranging from 50 to 100 mul sec-1 show any effect on the extractability of the metals studied. With uni-directional and bi-directional flows the extractable amounts of metals are, with the exception of Mn, not different from those obtained in conventional procedures, but the saving in operation time is...

  4. Sequential extraction of inorganic mercury in dumped blast furnace sludge.

    Science.gov (United States)

    Földi, Corinna; Andrée, Corlin-Anna; Mansfeldt, Tim

    2015-10-01

    Blast furnace sludge (BFS) is an industrial waste with elevated mercury (Hg) contents due to the enrichment during the production process of pig iron. To investigate the potential pollution status of dumped BFS, 14 samples with total Hg contents ranging from 3.91 to 20.8 mg kg(-1) from five different locations in Europe were sequentially extracted. Extracts used included demineralized water (fraction 1, F1), 0.1 mol L(-1) CH3COOH + 0.01 mol L(-1) HCl (F2), 1 mol L(-1) KOH (F3), 7.9 mol L(-1) HNO3 (F4), and aqua regia (F5). The total recovery ranged from 72.3 to 114 %, indicating that the procedure was reliable when adapted to this industrial waste. Mercury mainly resided in the fraction of "elemental" Hg (48.5-98.8 %) rather being present as slightly soluble Hg species associated with sludge particles. Minor amounts were found as mercuric sulfide (F5; 0.725-37.3 %) and Hg in crystalline metal ores and silicates (F6; 2.21-15.1 %). The ecotoxically relevant fractions (F1 and F2) were not of significance (F1,

  5. The Potential of Sequential Extraction in the Characterisation and Management of Wastes from Steel Processing: A Prospective Review

    Science.gov (United States)

    Rodgers, Kiri J.; Hursthouse, Andrew; Cuthbert, Simon

    2015-01-01

    As waste management regulations become more stringent, yet demand for resources continues to increase, there is a pressing need for innovative management techniques and more sophisticated supporting analysis techniques. Sequential extraction (SE) analysis, a technique previously applied to soils and sediments, offers the potential to gain a better understanding of the composition of solid wastes. SE attempts to classify potentially toxic elements (PTEs) by their associations with phases or fractions in waste, with the aim of improving resource use and reducing negative environmental impacts. In this review we explain how SE can be applied to steel wastes. These present challenges due to differences in sample characteristics compared with materials to which SE has been traditionally applied, specifically chemical composition, particle size and pH buffering capacity, which are critical when identifying a suitable SE method. We highlight the importance of delineating iron-rich phases, and find that the commonly applied BCR (The community Bureau of reference) extraction method is problematic due to difficulties with zinc speciation (a critical steel waste constituent), hence a substantially modified SEP is necessary to deal with particular characteristics of steel wastes. Successful development of SE for steel wastes could have wider implications, e.g., for the sustainable management of fly ash and mining wastes. PMID:26393631

  6. Beneficial effects of combining nilotinib and imatinib in preclinical models of BCR-ABL+ leukemias

    OpenAIRE

    Weisberg, Ellen; Catley, Laurie; Wright, Renee D.; Moreno, Daisy; Banerji, Lolita; Ray, Arghya; Manley, Paul W; Mestan, Juergen; Fabbro, Doriano; Jiang, Jingrui; Hall-Meyers, Elizabeth; Callahan, Linda; DellaGatta, Jamie L.; Kung, Andrew L.; Griffin, James D.

    2007-01-01

    Drug resistance resulting from emergence of imatinib-resistant BCR-ABL point mutations is a significant problem in advanced-stage chronic myelogenous leukemia (CML). The BCR-ABL inhibitor, nilotinib (AMN107), is significantly more potent against BCR-ABL than imatinib, and is active against many imatinib-resistant BCR-ABL mutants. Phase 1/2 clinical trials show that nilotinib can induce remissions in patients who have previously failed imatinib, indicating that sequential therapy with these 2 ...

  7. Correlation between the Results of Sequential Extraction and Effectiveness of Immobilization Treatment of Lead- and Cadmium-Contaminated Sediment

    Directory of Open Access Journals (Sweden)

    Milena B. Dalmacija

    2010-01-01

    Full Text Available The assessment of the quality of sediment from the Great Backi Canal (Serbia, based on the pseudo-total lead (Pb and cadmium (Cd content according to the corresponding Dutch standards and Canadian guidelines, showed its severe contamination with these two metals. A microwave-assisted BCR (Community Bureau of Reference of the Commission of the European Union sequential extraction procedure was employed to assess their potential mobility and risk to the aquatic environment. Comparison of the results of sequential extraction and different criteria for sediment quality assessment has led to somewhat contradictory conclusions. Namely, while the results of sequential extraction showed that Cd comes under the high-risk category, Pb shows low risk to the environment, despite its high pseudo-total content. The contaminated sediment, irrespective of the different speciation of Pb and Cd, was subjected to the same immobilization, stabilization/solidification (S/S treatments using kaolinite, montmorillonite, kaolinite-quicklime, montmorillonite-quicklime, fly ash, zeolite, or zeolite-fly ash combination. Semi-dynamic leaching tests were conducted for Pb- and Cd-contaminated sediment in order to assess the long-term leaching behavior of these metals. In order to simulate “worst case” leaching conditions, the semi-dynamic leaching test was modified using 0.014 M acetic acid (pH = 3.25 and humic acid solutions (20 mg TOC l-1 as leachants instead of deionized water. The effectiveness of S/S treatment was evaluated by determining diffusion coefficients (De and leachability indices (LX. The standard toxicity characteristic leaching procedure (TCLP was applied to evaluate the extraction potential of Pb and Cd. A diffusion-based model was used to elucidate the controlling leaching mechanisms. Generally, the test results indicated that all applied S/S treatments were effective in immobilizing Pb and Cd, and the treated sediments may be considered acceptable

  8. Effects of supercritical fluid extractions on metal ion partitioning as indicated by sequential extractions

    International Nuclear Information System (INIS)

    Partitioning of stable elements and uranium to two sediments using sequential extractions (SE) have been studied. These matrices were then subjected to supercritical fluid extraction (SFE) to attempt to remove the uranium. SEs were repeated on the material remaining after SFE to determine any changes in partitioning. Under suitable chemical conditions, ligand-assisted SFE can be used to extract many metal ions from such matrices. Under the conditions used, the 'easily leachable' metals were extracted, but the refractory metals were not. In addition, SFE appears to redistribute the remaining metal cations among the remaining geochemical after SFE treatment. Results are presented and discussed in the context of developing decontamination strategies for contaminated soils and sediments. (author)

  9. Solid sample graphite furnace atomic absorption spectroscopy for supporting arsenic determination in sediments following a sequential extraction procedure

    International Nuclear Information System (INIS)

    Solid sample graphite furnace atomic absorption spectroscopy (SS-GFAAS) has been proposed since its appearance as a good alternative to wet methods of analysis in many matrices. Here, we examine the use of SS-GFAAS for total and leachable arsenic determination in sediments from distinct origins. Our direct analysis of seven selected sediments was not always free of spectral matrix interference, but the spectroscopic technique gave very good results for (a) direct arsenic measurement in solid residues from a range of leaching processes, (b) total arsenic determination (HNO3 leaching test) and (c) the evaluation of its potential remobilisation (modified BCR three-step sequential extraction scheme). For the optimised instrumental conditions, the analysis limit was 0.44 mg kg-1 and long-term reproducibility was between 10-15%. The sum of leachable arsenic in HNO3 65% and the residual fraction, gave recoveries from 72 to 118% of total arsenic content. These results are a good alternative to other cumbersome wet methods involving HF

  10. Comparison between B CR sequential extraction and geo-accumulation method to evaluate metal mobility in sediments of Dongting Lake, Central China

    Institute of Scientific and Technical Information of China (English)

    YAO Zhigang

    2008-01-01

    The form in which a metal exists strongly influences its mobility and thus,the effects on the environment.Operational methods of speciation analysis,such as the use of sequential extraction procedures,are commonly applied.The Dongting Lake,the second largest fresh-water lake in China,contains three China wetlands of international importance,the East Dongting Lake,South Dongting Lake,and West Dongting Lake.In this work,an optimized BCR sequential extraction procedure was used to assess the environmental risk of Cd,Cr,Cu,Ni,Pb and Zn in contaminated sediment of the Dongting Lake.The procedure was evaluated by using a certified reference material,BCR701.The results of the partitioning study indicated that in the lake sediments,more easily mobilized forms(acid exchangeable) were predominant for Cd,particularly in the samples from the East Dongting Lake.In contrast,the largest amount of Pb was associated with the iron and manganese oxide fractions and Cu,Zn,Cr,and Ni analyzed were mainly distributed in residual phase at an average percentage greater than 60% of the total metals.The potential risk to the lake's water contamination was highest in the East Dongting Lake based on the calculated contamination factors.On the other hand,the total metal content was determined as well by inductively coupled plasma and mass spectrometry(ICP-MS)and assessed by using geo-accumulation index.The assessment results using geo-accumulation index were compared with the information on metal speciation.Both were correspondent with each other.

  11. Fractionation of plutonium in environmental and bio-shielding concrete samples using dynamic sequential extraction

    DEFF Research Database (Denmark)

    Qiao, Jixin; Hou, Xiaolin

    2010-01-01

    Fractionation of plutonium isotopes (238Pu, 239,240Pu) in environmental samples (i.e. soil and sediment) and bio-shielding concrete from decommissioning of nuclear reactor were carried out by dynamic sequential extraction using an on-line sequential injection (SI) system combined with a specially...... designed extraction column. Plutonium in the fractions from the sequential extraction was separated by ion exchange chromatography and measured using alpha spectrometry. The analytical results show a higher mobility of plutonium in bio-shielding concrete, which means attention should be paid...

  12. 土壤重金属连续提取方法的优化%Optimization of Soil Heavy Metal Sequential Extraction Procedures

    Institute of Scientific and Technical Information of China (English)

    刘丹丹; 刘菲; 缪德仁

    2015-01-01

    重金属在污染土壤中的形态分布决定着重金属的迁移性和危害的程度。土壤重金属形态分析应用最多的是Tessi-er和BCR连续提取法。Tessier和BCR连续提取法没有考虑土壤样品的特征。美国环保署危险废物浸出毒性鉴别标准法虽然考虑土壤pH值,但没有划分形态。采集不同pH土样,结合Tessier、BCR和毒性浸出鉴别方法的特征,优化出针对不同pH值土壤的连续提取方法,将土壤中重金属划分为活性态、次生碳酸盐结合态、次稳定态和稳定态。用优化的连续提取方法对土样进行连续提取,重金属回收率为85%~115%。优化连续提取方法的结果与Tessier和BCR结果对比显示优化连续提取方法克服了Tessier连续提取法对非石灰质土壤提取过量BCR连续提取法对石灰质土壤提取不足的缺点。优化后的连续提取方法数据稳定可靠,可作为重金属形态分析方法使用。%The environmental risks of heavy metals depend on its speciation distribution in contaminated soils. The chemical speciation analysis was one of the hot topics in environmental sciences.In recent years,the most popular sequential extraction procedures were Tessier and BCR.Nethier Tessier nor BCR sequential extraction methods considered the characteristics of soil samples.Although Toxicity Characteristic Leaching Procedure (TCLP)used two different extraction regent is based on the pH values of soil samples,it is a single step extrac-tion method.In this paper,compared with Tessier,BCR and TCLP extraction techniques,the speciation extrac-tion method was optimized in order to adapt soils with different pH values.The heavy metals in the soils were di-vided into active fraction,secondary carbonate fraction,secondary steady fraction and steady fraction.The re-sults show that the optimized sequential extraction method is more stable,the recovery rate is 85% to 1 15%which could satisfy the soil speciation

  13. Evaluation of degree of readsorption of radionuclides during sequential extraction in soil: comparison between batch and dynamic extraction systems

    DEFF Research Database (Denmark)

    Petersen, Roongrat; Hansen, Elo Harald; Hou, Xiaolin

    Sequential extraction techniques have been widely used to fractionate metals in solid samples (soils, sediments, solid wastes, etc.) due to their leachability. The results are useful for obtaining information about bioavailability, potential mobility and transport of element in natural environments...

  14. Free radical-scavenging activity of sequential leaf extracts of Embothrium coccineum

    OpenAIRE

    Leyton Miguel; Mellado Marco; Jara Carlo; Montenegro Iván; González Sebastian; Madrid Alejandro

    2015-01-01

    The aim of this study was to evaluate the influence of phenolic, flavonoid, and anthraquinones from sequential extracts (n-hexane, dichloromethane, ethyl acetate, and ethanol) of Embothrium coccineum leaves on the antioxidant capacity, cell viability, and toxicity of the same, in order to find possible sources for novel antioxidants for food and pharmaceutical formulations. Antioxidant potential of sequential extracts was analyzed by five different assays: 2,2-diphenyl...

  15. Sequential extraction separation for determination of technetium-99 in radwastes by ICP-MS

    International Nuclear Information System (INIS)

    An approach based on sequential extraction separation and the subsequent ICP-MS measurement was introduced to determine 99Tc in radioactive wastes. The radwastes were firstly alkaline-fused and the 99Tc was separated by a sequential solvent extraction prior to ICP-MS measurement. NaDDC was selected as a chelation reagent in the solvent extraction processes. The influence of HCl and matrix concentration on the recovery yield and the effectiveness of removing isobar and unwanted radionuclides, such as 137Cs, 54Mn, 60Co and 110mAg, were evaluated. The designed sequential extraction procedure was optimized by an extraction experiment. The proposed technique is proven to be a simple and practical alternative for 99Tc determination in low-level radioactive wastes; chemical separation of 99Tc can be simplified and preconcentration such as precipitation and/or ion exchange, before the solvent extraction, can be excluded. (author)

  16. Sequential accelerated solvent extraction of polycyclic aromatic hydrocarbons with different solvents: performance and implication.

    Science.gov (United States)

    Ma, Xiaoxuan; Ran, Yong; Gong, Jian; Chen, Diyun

    2010-01-01

    Sixteen USEPA priority polycyclic aromatic hydrocarbons (PAHs) extracted by Soxhlet extraction (S-PAHs) with dichloromethane and routine accelerated solvent extraction (A-PAHs) with 1:1 toluene/methanol, respectively, were investigated in 24 soil samples from two cities in the center of the Pearl River Delta, South China. Polycyclic aromatic hydrocarbons, methylphenanthrene and perylene, in two soils, two sediments, and an immature oil shale were also sequentially extracted by accelerated solvent extraction (ASE) with each of four different organic solvents for three times. The A-PAHs' concentrations are 2.41 times the S-PAHs' concentrations. For sequential three ASEs, PAHs in the first extract account for 56 to 67% of their total concentrations in the sequential three extractions and toluene displays the best extraction performance among the four solvents. Diagnostic ratios of PAHs in Soxhlet extraction, routine ASE, and sequential ASE with each solvent for a given sample are very similar, suggesting their identical petrogenic and pyrogenic sources in the soils and sediments. But the PAH ratios for the shale have an obvious petrogenic origin. The perylene/5-ring PAH ratios indicate a diagenetic source, especially in the shale and sediments. The correlation analysis shows that A-PAHs/S-PAHs is better associated with the contents of total organic carbon (TOC) than those of black carbon (BC). The above results indicate the significant petrogenic origin of PAHs and the important effect of organic matter on their extraction and distribution in the investigated field soils/sediments. PMID:21284305

  17. A test of sequential extractions for determining metal speciation in sewage sludge-amended soils

    International Nuclear Information System (INIS)

    Sequential extraction procedures are widely used to estimate the quantity of trace metals bound to different solid fractions in contaminated soils. However, reliability of speciation of trace metals by these procedures remains largely unexamined. In the present study, the selectivity of each extraction step was tested by observing the effect of reversing the extraction order in the procedure. Two different sequential extraction methods and their reversed modes were used for metal fractionation in sewage sludge-amended soils. Significantly increased amounts of extractable metals (Cd, Cu, Pb and Zn) were evident in the sludge-amended soils compared to control soil by all extraction schemes; however, the amounts of metals extracted by each step were strongly dependent on the order of extraction, the type of reagents and the nature of the individual metals. Caution is advised in deducing the forms of soil metals from sequential extraction results from metal-contaminated soils. - Sequential extraction methods are of questionable accuracy for determining the chemical forms of certain trace metals in soils

  18. Fractionation of natural radionuclides from soil and sediment samples with sequential extractions

    International Nuclear Information System (INIS)

    Sequential extractions are used to evaluate the mobility and bioavailability of natural radionuclides in the environment as well as their binding and origin in soil. However, as extractions results are dependent on the extraction conditions, it is not possible to find out the exact chemical forms of the radionuclides or their sorption to certain geochemical phases. In sequential extractions the same solid sample is extracted several times with stronger extraction conditions each time. There are many extraction methods but their fractionation is mostly same. Easily exchanged cations are extracted in the first step. In the second step acid-soluble materials are dissolved and in the third step reducible manganese and iron oxyhydroxides are dissolved. In the fourth step the sample is extracted with oxidizing reagent to decompose the oxidisable materials. In the last extraction step the remnant sample is decomposed with strong acids. This study focuses on sequential extractions of Olkiluoto soil samples. Five-step extractions were carried out to find out more information about the sorption of uranium, thorium, radium and lead in the soil. The concentrations of uranium, thorium and stable lead in extraction fractions were determined with inductively coupled plasma mass spectrometry. 210Pb activity concentration was determined by alpha spectrometry through its daughter nuclide 210Po. Fractionation of the radionuclides was found to be dependent on the sample depth and particle size. The largest concentrations of uranium, thorium and lead were found in the smallest particle size samples. (orig.)

  19. ASSESSMENT OF A SEQUENTIAL EXTRACTION PROCEDURE FOR PERTURBED LEAD CONTAMINATED SAMPLES WITH AND WITHOUT PHOSPHORUS AMENDMENTS

    Science.gov (United States)

    Sequential extraction procedures (SEP) attempt to determine the solid-phase association of elements in natural matrices. However, a major obstacle confronting SEP is species alteration of extracted metals before separation of solids from solution. The objectives of this study w...

  20. Effect of Sequential Extraction for Heavy Metals Speciation on Mineral Phases of Sediment%重金属形态连续萃取法对沉积物矿物相态的影响

    Institute of Scientific and Technical Information of China (English)

    王畅; 杜虹; 杨运云; 郭鹏然

    2011-01-01

    采用X-射线衍射法(XRD)对海水养殖区沉积物中重金属形态的连续萃取法进行了考察,并与BCR法萃取能力进行了比较.根据XRD分析结果,连续萃取法和BCR法的非残留态萃取对其结合矿物有较强的提取能力,对残留态的结合矿物影响很小.相比BCR法,连续萃取法的可还原态萃取对其所结合的铁氧化物矿物溶解释放能力较强,对弱酸提取态的结合矿物影响较小.连续萃取法的有机质结合态和BCR法的可氧化态萃取皆对沉积物中可还原态的结合矿物有明显影响,而BCR法的可氧化态萃取对弱酸提取态的结合矿物有较大影响.连续萃取法对可还原态和有机质结合态重金属的萃取能力和选择性优于BCR法,且连续萃取法可分别评价沉积物中重金属有机质结合态和硫化物结合态.%X-ray diffractiometry (XRD) was applied to investigate the extraction ability of the proposal sequential extraction (PSE) procedure for heavy metals speciation in sediments from maricul-ture area, and compare PSE procedure with European Community Bureau of Reference Sequential extraction method (BCR method). According to the results of XRD, the sequential extraction for non-residual fractions by PSE procedure and BCR method could strongly liberate their bound minerals to solutions, however, could hardly affect the minerals of residual fraction. The extraction for reducible fraction by PSE procedure could more strongly dissolve ferric oxides that bound reducible fraction than by BCR method; moreover, more slightly affect the minerals that bound weak acid soluble fraction. Except effect on the minerals that bound reducible fraction, the extraction for oxidizable fraction by BCR method had a more significant effect on the minerals that bound weak acid soluble fraction than the extraction for organic matter bound fraction by PSE procedure. PSE proce-dure has the stronger extraction ability and better selectivity for reducible

  1. EVALUATION OF GEOCHEMICAL QUALITY CONTROL IN DETERMINATION OF Mn IN SOILS USING A SEQUENTIAL CHEMICAL EXTRACTION

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Sequential chemical extraction procedure has been widely used to partition particulate trace metals into various fractions and to describe the distribution and the statue of trace metals in geo-environment. One sequential chemical extraction procedure was employed here to partition various fractions of Mn in soils. The experiment was designed with quality controlling concept in order to show sampling and analytical error. Experimental results obtained on duplicate analysis of all soil samples demonstrated that the precision was less than 10% (at 95% confidence level). The accuracy was estimated by comparing the accepted total concentration of Mn in standard reference materials (SRMs) with the measured sum of the individual fractions. The recovery of Mn from SRM1 and SRM2 was 94.1% and 98.4% , respectively. The detection limit, accuracy and precision of the sequential chemical extraction procedure were discussed in detailed. All the results suggest that the trueness of the analytical method is satisfactory.

  2. BCR- ringtest of some individual chlorobiphenyls in cleaned eel-fat extracts (3/1984): Splitless injection : summary of results

    OpenAIRE

    Anonymous,

    1984-01-01

    In the meeting on PCB analyses organized in Ulm, Donau, West Germany, 11-13 April 1984, where the second ringtest 2/1983 (Report 84.27 d.d. 1984- 03-26 ) was discussed, it was decided to organize a next ringtest. In this ringtest identification and quantification of some individual chlorobiphenyls should be carried out in the extracts of eel - fat samples (cleaned- up by saponification) using splitless injection (part 1) and/or on-column injection after optimization (part 2). For the optimiza...

  3. Sequential extraction evaluation of soil washing for radioactive contamination

    International Nuclear Information System (INIS)

    This paper reports on surveys of soil washing as currently applied, particularly in Europe, which show a key similarity in relying on size classification for the primary contaminant separation. Wet screening is used to remove particulate below a 63 to 74 micron cutoff range, which is then disposed of as hazardous waste. Though chemical extraction may be employed in conjunction with screening, it is commonly accepted that fine particulate present in solution may resorb extracted contaminants, and it is not cost effective to continue to wash the fines. Testing of more aggressive flowsheets is commonly limited to trail-and-error extraction with mineral acids which may dissolve a significant fraction (4-5 wt%) of the environmentally benign soil matrix. The Environmental Protection Agency's guidance on soil washing treatability studies suggests a 50% reduction of contamination in particles over 2mm as a reasonable cutoff for choosing soil washing for further development

  4. Combination of heterogeneous EEG feature extraction methods and stacked sequential learning for sleep stage classification.

    Science.gov (United States)

    Herrera, L J; Fernandes, C M; Mora, A M; Migotina, D; Largo, R; Guillen, A; Rosa, A C

    2013-06-01

    This work proposes a methodology for sleep stage classification based on two main approaches: the combination of features extracted from electroencephalogram (EEG) signal by different extraction methods, and the use of stacked sequential learning to incorporate predicted information from nearby sleep stages in the final classifier. The feature extraction methods used in this work include three representative ways of extracting information from EEG signals: Hjorth features, wavelet transformation and symbolic representation. Feature selection was then used to evaluate the relevance of individual features from this set of methods. Stacked sequential learning uses a second-layer classifier to improve the classification by using previous and posterior first-layer predicted stages as additional features providing information to the model. Results show that both approaches enhance the sleep stage classification accuracy rate, thus leading to a closer approximation to the experts' opinion. PMID:23627659

  5. Comparison between sequential and single extraction procedures for metal speciation in fresh and dried Sedum Plumbizincicola

    Institute of Scientific and Technical Information of China (English)

    宋祖威; 仲兆平; 钟道旭; 吴龙华; 骆永明

    2015-01-01

    Sequential and single extraction procedures were applied to both fresh and driedSedum Plumbizincicola leaves and stems. The extractants, different from those of soil, sediment or sewage sludge metal fractions, were water, 80% (v/v) ethanol, 1 mol/L NaCl, 2% HAc and 0.6 mol/L HCl. Zn, Cd and Cu in the extracts and samples were measured by flame atomic adsorption spectrometry. In sequential extraction procedures, water soluble form and ethanol soluble form are the main fractions for Zn, while water soluble form and NaCl soluble form for Cd, and comparatively uniform distribution for Cu with the residue form most and HCl soluble form second. Single extraction procedures are used to compare the extraction efficiencies of the five reagents to screen appropriate extractants and operating conditions for liquid extraction to deal with large amount of harvested metal-contained biomass, which will pose a threat to the environment if treated improperly. The sequences of extraction efficiencies are HCl>NaCl≈HAc>Water≈Ethanol for Zn and HCl≈NaCl≈HAc>Water>Ethanol for Cd. As for Cu, all the five extractants cannot effectively extract Cu, but HCl achieves a higher efficiency (>70% in fresh samples, and 45%−60% in dried samples). Besides, extraction efficiencies for most extractants in fresh samples are higher than those in dried samples, and extraction efficiencies of stems and leaves for the five extractants are close. The two extraction procedures can obtain high degree of accuracy with the relative standard deviation (RSD) lower than 10%, and metal recoveries are controlled between 80%−120% with most of 90%−110%.

  6. Single column sequential extraction of Ra, Nd, Th, Pa and U from a natural sample

    OpenAIRE

    Jeandel, C.; Venchiarutti, C.; Bourquin, M.; Pradoux, C; Lacan, F.; P. van Beek; Riotte, Jean

    2011-01-01

    A new procedure allowing the sequential extraction of Ra, Nd, Th, Pa and U from the same initial natural sample (sea or river waters, particles, sediments, rocks) is proposed. Extraction recoveries were better than 90%. Procedural blanks ranged from 80 pg (for Nd) to below 1 fg, the detection limit of the MC-ICP-MS used (for Pa); all were negligible compared with the amounts of elements currently determined. Based on classical anionic resins attached to a peristaltic pump allowing precise flo...

  7. Sequential injection system incorporating a micro extraction column for automatic fractionation of metal ions in solid samples

    DEFF Research Database (Denmark)

    Chomchoei, Roongrat; Miró, Manuel; Hansen, Elo Harald;

    2005-01-01

    Recently a novel approach to perform sequential extractions (SE) of elements in solid samples was developed by this group, based upon the use of a sequential injection (SI) system incorporating a specially designed extraction microcolumn. Entailing a number of distinct advantages as compared to c...... CRM483 soil which exhibits inhomogeneity in the particle size distribution....

  8. Sequential Extraction of Aluminum and Iron from Acidic Soils by Chemical Selective Dissolution Methods

    Institute of Scientific and Technical Information of China (English)

    HEJIZHENG; A.VIOLANTE; 等

    1998-01-01

    Potassium chloride, Na-pyrophosphate,CuCl2,NH4-oxalate,dithionit-citrate-bicarbonate(DCB) and Na-citrate solutions were employed to etract aluminum(Al) and iron(Fe) sequentially and separately from 15 acidic soils located at the Mangshan Mountains,Hunan Province,China,Many evidences showed that separate pyrophosphate extracted mainly KCl-extractable Al,organo-Al complexes and some inorganic Al compounds,whereas separate CuCl2 extracted KCl-extractable Al and some organo-Al complexes,CuCl2 extracted much less amounts of Al than pyrophosphate did from the soils .Separate oxalate did not extract all KCl-pyrophosphate-CuCl2-oxalate seuentially extractable Al and Fe ,Also,separate DCB did not extract all KCl-pyrophosphate-CuCl2-oxalate-DCB sequentially extractable Al. The forms of Al extacted by oxalate and DCB from the soils were majorly noncrystalline.The interlayered materials of 1.4-nm intergrade minerals of the soils were attributed mainly to hydroxy Al polymers.

  9. Antibacterial activity of sequentially extracted organic solvent extracts of fruits, flowers and leaves of Lawsonia inermis L. from Jaffna

    Institute of Scientific and Technical Information of China (English)

    E Christy Jeyaseelan; S Jenothiny; MK Pathmanathan; JP Jeyadevan

    2012-01-01

    To reveal the antibacterial activity of sequentially extracted different cold organic solvent extracts of fruits, flowers and leaves of Lawsonia inermis (L. against) some pathogenic bacteria. Methods: Powders of fruits, flowers and leaves of L. inermis were continuously extracted with dichloromethane (DCM), ethyl acetate and ethanol at ambient temperature. The dried extracts were prepared into different concentrations and tested for antibacterial activity by agar well diffusion method, and also the extracts were tested to determine the available phytochemicals.Results:Except DCM extract of flower all other test extracts revealed inhibitory effect on all tested bacteria and their inhibitory effect differed significantly (P<0.05). The highest inhibitory effect was showed by ethyl acetate extract of flower against Staphylococcus aureus (S. aureus) and Pseudomonas aeruginosa (P. aeruginosa), and ethyl acetate extract of fruit on Escherichia coli (E. coli) and Bacillus subtilis (B. subtilis). The ethyl acetate and ethanol extracts of flower, fruit and leaf expressed inhibition even at 1 mg/ 100 μl against all test bacteria. Among the tested phytochemicals flavonoids were detected in all test extracts except DCM extract of flower.Conclusions:The study demonstrated that the ethyl acetate and ethanol extracts of fruit and flower of L. inermis are potentially better source of antibacterial agents compared to leaf extracts of respective solvents.

  10. Preliminary phytochemical investigation and thin layer chromatography profiling of sequential extracts of Moringa oleifera pods

    Directory of Open Access Journals (Sweden)

    Veena Sharma

    2013-01-01

    Full Text Available Context: Moringa oleifera Lam (Moringaceae is a highly valued plant, distributed in many countries of the tropics and subtropics. It has an impressive range of medicinal uses with high nutritional value. Aim: The present study, primarily aims to carry out a preliminary phytochemical screening so as to detect the major class of compounds present in M. oleifera and to perform thin layer chromatography (TLC profiling of all sequential extracts. Materials and Methods: Phytochemical analysis was performed by various qualitative methods and TLC profiling was carried out using various solvent system of varying polarity. Results and Conclusions: Qualitative phytochemical analysis reflects the presence of phenolics, triterpenoids, cardiac glycosides, steroid, alkaloids and saponin in the plant extract. TLC profiling of the M. oleifera pods was carried out using sequential extracts of petroleum ether, benzene, petroleum ether, benzene, chloroform, ethyl acetate, ethanol and water respectively. The results obtained in the present investigation indicated M. oleifera pods as a rich source of natural antioxidants.

  11. Sequential solvent extraction for forms of antimony in five selected coals

    Science.gov (United States)

    Qi, C.; Liu, Gaisheng; Kong, Y.; Chou, C.-L.; Wang, R.

    2008-01-01

    Abundance of antimony in bulk samples has been determined in five selected coals, three coals from Huaibei Coalfield, Anhui, China, and two from the Illinois Basin in the United States. The Sb abundance in these samples is in the range of 0.11-0.43 ??g/g. The forms of Sb in coals were studied by sequential solvent extraction. The six forms of Sb are water soluble, ion changeable, organic matter bound, carbonate bound, silicate bound, and sulfide bound. Results of sequential extraction show that silicate-bound Sb is the most abundant form in these coals. Silicate- plus sulfide-bound Sb accounts for more than half of the total Sb in all coals. Bituminous coals are higher in organic matterbound Sb than anthracite and natural coke, indicating that the Sb in the organic matter may be incorporated into silicate and sulfide minerals during metamorphism. ?? 2008 by The University of Chicago. All rights reserved.

  12. Distributions and concentrations of thallium in Korean soils determined by single and sequential extraction procedures.

    Science.gov (United States)

    Lee, Jin-Ho; Kim, Dong-Jin; Ahn, Byung-Koo

    2015-06-01

    The objectives of this study were to investigate the distribution of thallium in soils collected near suspected areas such as cement plants, active and closed mines, and smelters and to examine the extraction of thallium in the soils using 19 single chemical and sequential chemical extraction procedures. Thallium concentrations in soils near cement plants were distributed between 1.20 and 12.91 mg kg(-1). However, soils near mines and smelters contained relatively low thallium concentrations ranging from 0.18 to 1.09 mg kg(-1). Thallium extractability with 19 single chemical extractants from selected soils near cement plants ranged from 0.10% to 8.20% of the total thallium concentration. In particular, 1.0 M NH4Cl, 1.0 M (NH4)2SO4, and 1.0 M CH3COONH4 extracted more thallium than other extractants. Sequential fractionation results of thallium from different soils such as industrially and artificially contaminated soils varied with the soil properties, especially soil pH and the duration of thallium contamination. PMID:25836266

  13. Determination of sequential extracted uranium speciation in geological samples with HR-ICP-MS method

    International Nuclear Information System (INIS)

    This paper presents a method of determing uranium speciation in geological samples by means of sequential extraction procedure with HR-ICP-MS and its application to sandstone uranium exploration. The extraction chemical procedure is modified from Tessier, uranium in sample is classified into five speclarion: exchangeable, bound to carbonates, bound to Fe-Mn oxides, bound to sulfide-organic matter, and residual. The uranium is extracted respectively and the extractants are measured by the high-resolution inductively coupled mass spectrometry (HR-ICP-MS) with high sensitivity and low background. The extraction procedure has been proved to be satisfactory by means of national reference standard materials, international reference standard materials, and artificial uranium mine sample. Experiment results obtained on replicate samples demonstrate that the relative standard deviation (RSD) of the sequential extraction procedure followed by HR-ICP-MS is 2.6 % for bound to carbonates, 4.0% for bound to sulfide -organic matter, 6.0% for residual, 6.1% bound to Fe-Mn oxides, and 26% for exchangeable fraction. The ratio of uranium in bound to uranium carbonates in residual can be used to indicated the probability of buried uranium deposit. (authors)

  14. Extracting regulatory modules from gene expression data by sequential pattern mining

    OpenAIRE

    Kim Mingoo; Shin Hyunjung; Su Chung Tae; Joung Je-Gun; Kim Ju Han

    2011-01-01

    Abstract Background Identifying a regulatory module (RM), a bi-set of co-regulated genes and co-regulating conditions (or samples), has been an important challenge in functional genomics and bioinformatics. Given a microarray gene-expression matrix, biclustering has been the most common method for extracting RMs. Among biclustering methods, order-preserving biclustering by a sequential pattern mining technique has native advantage over the conventional biclustering approaches since it preserv...

  15. Sequential extraction partitioning of trace and nutrient elements in ashes from biomass firing district heating plants

    Directory of Open Access Journals (Sweden)

    Šyc M.

    2013-04-01

    Full Text Available Four different ashes from three district heating plants firing biomass were studied with the respect to their potential application as soil fertilizers. Major and trace elements content and some important characteristics of the studied ashes are also presented. Five stage sequential extraction procedure was used for the determination of distribution and speciation of As, Ca, Cd, Cr, Cu, K, Mg, Na, Ni, Pb and Zn in studied ash samples.

  16. Heavy metals partioning in three French forest soils by sequential extraction procedure

    OpenAIRE

    Probst, Anne; Hernandez, Laura; Probst, Jean-Luc

    2003-01-01

    To know the concentration of heavy metal associated to chemical compounds is important to evaluate the environmental risks on soils, particularly regarding ion bioavailability. The relative mobility and strength of binding of heavy metals to the soil components can be studied using a sequential extraction procedure which provides a meaningful comparison between different soil profiles. The heavy metals partitioning bas been identified in three different french forest soils : one cambic podzol...

  17. Sequential Extraction Partitioning of Trace and Nutrient Elements in Ashes from Biomass Firing District Heating Plants

    OpenAIRE

    Šyc M.; Tošnarová M.; Hrma J.; Pohořelý M.; Svoboda K.; Punčochář M.

    2012-01-01

    Four different ashes from three district heating plants firing biomass were studied with the respect to their potential application as soil fertilizers. Major and trace elements content and some important characteristics of the studied ashes are also presented. Five stage sequential extraction procedure was used for the determination of distribution and speciation of As, Ca, Cd, Cr, Cu, K, Mg, Na, Ni, Pb and Zn in studied ash samples.

  18. EVALUATION OF GEOCHEMICAL QUALITY CONTROL IN DETERMINATION OF Mn IN SOILS USING A SEQUENTIAL CHEMICAL EXTRACTION

    Institute of Scientific and Technical Information of China (English)

    DONGDe-ming; FANGChun-sheng; 等

    2002-01-01

    Sequential chemical extraction procedure has been widely used to partition particulate trace metals into vari-ous fractions and to describe the distribution and the statue of trace metals in geo-environment.One sequential chemical extraction procedure was employed here to partition various fractions of Mn in soils.The experiment was designed with quality controlling concept in order to show sampling and analytical error.Experimental results obtained on duplicate analy-sis of all soil samples demonstrated that the precision was less than 10%(at 95% confidence level).The accuracy was estimated by comparing the accepted total concentration of Mn in standard reference materials (SRMs) with the measured sum of the individual fractions.The recovery of Mn from SRM1 and SRM2 was 94.1% and 98.4%,respectively.The detection limit,accuracy and precision of the sequential chemical extraction procedure were discussed in detailed.All the results suggest that the trueness of the analytical method is satisfactory.

  19. Arsenic fractionation by sequential extractions in standard reference materials and industrially contaminated soil samples: Applicability and drawbacks

    Energy Technology Data Exchange (ETDEWEB)

    Herreweghe, S. van; Swennen, R. [Fysico-Chemische Geologie, Heverlee (Belgium)

    2003-07-01

    Availability mobility (phyto)toxycity and potential risk of contaminants is strongly affected by the manner of appearance of elements, the so-called speciation. Operational fractionation methods like sequential extractions have been applied for a long time to determine the solid phase speciation of heavy metals since direct determination of specific chemical compounds can not always be easily achieved. The aim of this research was to assess the applicability of sequential extractions on highly contaminated soils where arsenic is also present as discrete As-bearing minerals. Sequential extractions are mostly developed to fractionate heavy metals occurring in trace amounts and their applicability on highly contaminated samples remains insufficiently studied. There was, furthermore, a need to evaluate sequential extraction schemes specifically focussing on metalloid element extraction such as arsenic. (orig.)

  20. Sequential extraction for radionuclide fractionation in soil samples: a comparative study

    International Nuclear Information System (INIS)

    Two sequential extraction procedures, Tessier's method (Anal. Chem. 51(7) (1979) 844), and a current version known as Schultz's method (J. Environ. Radioact. 40(2) (1998) 155), were compared. The two procedures were applied to a natural soil sample that presents high activity concentrations in natural radionuclides of the 238U series. Reproducibility studies of each method and a comparison between the two sets of results were performed for uranium, thorium, and radium. The results were different for each radionuclide. Analysis of the extracted fractions was carried out by alpha spectrometry

  1. Sequential extraction combined with isotope analysis as a tool for the investigation of lead mobilisation in soils: Application to organic-rich soils in an upland catchment in Scotland

    International Nuclear Information System (INIS)

    Sequential extraction (modified BCR procedure) combined with isotope analysis has been investigated as a tool for assessing mobilisation of lead into streams at an upland catchment in NE Scotland. The maximum lead concentrations (up to 110 mg kg-1 in air-dried soil) occurred not at the surface but at about 10 cm depth. The lowest 206Pb/207Pb ratios in any profile occurred, with one exception, at 2.5-5 cm depth. In the one exception, closest to the only road in the area, significantly lower 206Pb/207Pb ratios in the surface soil together with much increased chloride concentrations (in comparison to other surface waters) indicated the possible mobilisation of roadside lead and transfer to the stream. The 206Pb/207Pb ratios in extractable fractions tended at depth towards the ratio measured in the residual phase but the ratios in the oxidizable fraction increased to a value higher than that of the residual phase. - Sequential extraction combined with isotope analysis was used as a tool to assess mobilisation of lead into streams

  2. Fractionation of U, Th, Ra and Pb from boreal forest soils by sequential extractions

    International Nuclear Information System (INIS)

    Highlights: • A five-step sequential extraction was performed to boreal forest soil samples. • Extractions gave information about mobility and sorption of natural radionuclides. • Fractionation of U, Th, Pb and Ra varied between the sample depth and grain size. • U, Pb and Fe fractionation suggested more reducing conditions in the subsoil samples. • Ra was the only radionuclide that could be regarded as mobile. - Abstract: To determine the mobility of natural radionuclides in boreal forest soil, a five-step sequential extraction procedure was carried out on soil samples taken from various depths down to 3 m on Olkiluoto Island, Finland, where there are plans to construct a spent nuclear fuel disposal repository in the bedrock. The extracted fractions studied were exchangeable, acid-soluble, reducible, oxidizable and tightly bound. It was found that the extractability of most of the radionuclides studied was dependent on the sample grain size and depth. All the elements were concentrated in the smallest grain size samples (<0.063 mm). The extraction behaviour of Th, however, did not vary with sample depth, and only about 10% of the Th was extracted by the time of the final extraction step. Stable Pb and 210Pb, as well as Ba and Ra concentrations were strongly correlated in the extractions. Radium and Ba were leached more readily than the other elements; approximately 17% of the total Ra was found in the first fraction extracted, representing exchangeable ions. Uranium was more mobile in the topsoil horizons than in the lower horizons. In the topsoil samples, an average of 51% of the extractable U was leached in the second extraction step, representing the elements soluble in weak acids, whereas only 13% of the U in the subsoil samples was extracted in this step. This is probably due to changes in soil redox conditions lower down the soil profile. The extraction behaviour of Pb and Fe also suggests the presence of more reducing conditions in the deeper soil

  3. Study of metal fractionation in river sediments. A comparison between kinetic and sequential extraction procedures

    International Nuclear Information System (INIS)

    The extraction kinetic of trace metals (Cd, Cu, Pb, and Zn) in river sediments by four extraction agents was studied. As extractants ammonium acetate, acetic acid, hydroxylamine and EDTA solutions were assayed. These reagents can leach the metals more or less selectively from several metal compartments of sediments. The metal leaching kinetic model permits classification of the metal species in labile and moderately-labile ones. The combination of two or more non specific reagents permits a high characterisation of metal distribution and leachability. The results obtained with this model in four river sediments were compared with data obtained by the SM and T sequential extraction procedure, in order to characterise the chemical nature of leached metal. - A leached metal kinetic study may be a good way to study the mobility of trace metals in sediments

  4. Sequential extraction for the speciation of some heavy metals in soils

    International Nuclear Information System (INIS)

    The five step sequential extraction for speciation of copper and nickel originally designed for sediments has been applied to soil samples. The extractant solutions were: 1 mol/l ammonium acetate, 1 mol/l hydroxylammonium chloride in 25% acetic acid (1:1), 0.1 mol/l hydrochlorid acid, 0.5 mol/l sodium hydroxide and 8 mol/l nitric acid. The residue was decomposed by HF and HNO3. Using this procedure the metal fraction bound to the organic matter can be distinguished. The concentrations of analytes were determined in the soil extracts by FAAS and ETAAS. Accuracy was assessed by comparing the sum of the contents of copper and nickel in soil extracts with the total certified values of CRMs of soils. The overall recovery values for nickel was 84-105% and for copper 105-114%. (author)

  5. Use Of Sequential Extraction Procedures For The Natural Attenuation Of Radionuclides

    International Nuclear Information System (INIS)

    Metals at impacted and unimpacted sites are generally found in one of the following fractions: (1) dissolved, (2) occupying exchange sites of inorganic and organic soil constituents, (3) specifically adsorbed on inorganic soil constituents, (4) complexed with insoluble soil organics, (5) precipitated or coprecipitated as solids, or (6) occluded within the structure of primary and/or secondary minerals. Sequential extraction of soils and sediments has been developed to selectively remove and quantify contaminants from various defined geochemical fractions or mineral phases. The objective of these sequential extraction procedures (SEPs) is not to identify the actual form of a given metal in a soil or similar material, but to categorize the metals into defined geochemical fractions: e.g., exchangeable, acid extractable, reducible, organic, oxidizable, or residual. SEPs provide: (1) information on likely metal immobilization mechanism(s), (2) a mass balance of metal immobilization mechanisms, which can be used to gauge long term stability and develop site management criteria, (3) estimates on the fraction of metal in soil or sediment that may have ready impact to human health and the environment (free ion concentration from the exchangeable extraction), (4) estimates on the fraction of metal in soil or sediment that has the potential to be bioaccumulated in less-complex organisms and plants, (5) estimates on the fraction of metal in soil or sediment that has the potential to be bioaccumulated by more complex organisms

  6. Beryllium solubility in occupational airborne particles: Sequential extraction procedure and workplace application.

    Science.gov (United States)

    Rousset, Davy; Durand, Thibaut

    2016-01-01

    Modification of an existing sequential extraction procedure for inorganic beryllium species in the particulate matter of emissions and in working areas is described. The speciation protocol was adapted to carry out beryllium extraction in closed-face cassette sampler to take wall deposits into account. This four-step sequential extraction procedure aims to separate beryllium salts, metal, and oxides from airborne particles for individual quantification. Characterization of the beryllium species according to their solubility in air samples may provide information relative to toxicity, which is potentially related to the different beryllium chemical forms. Beryllium salts (BeF(2), BeSO(4)), metallic beryllium (Bemet), and beryllium oxide (BeO) were first individually tested, and then tested in mixtures. Cassettes were spiked with these species and recovery rates were calculated. Quantitative analyses with matched matrix were performed using inductively coupled plasma mass spectrometry (ICP-MS). Method Detection Limits (MDLs) were calculated for the four matrices used in the different extraction steps. In all cases, the MDL was below 4.2 ng/sample. This method is appropriate for assessing occupational exposure to beryllium as the lowest recommended threshold limit values are 0.01 µg.m(-3) in France([) (1) (]) and 0.05 µg.m(-3) in the USA.([ 2 ]) The protocol was then tested on samples from French factories where occupational beryllium exposure was suspected. Beryllium solubility was variable between factories and among the same workplace between different tasks. PMID:26327570

  7. Sequential extraction of fallout radiocesium from the soil. Small scale and large scale spatial variability

    International Nuclear Information System (INIS)

    The reproducibility, the small scale as well as the large scale variability of 137Cs extracted sequentially from the soil by using a modified Tessier procedure was investigated at several grassland sites in Bavaria/Germany and in the Chernobyl area. Because undisturbed grassland soils are never homogeneous with respect to their soil properties, all sequential extractions at the German sites were carried out at each plot separately for different soil layers (e.g., 0-2, 2-5, 5-10, 10-15, 15-20 and 20-30 cm). The results show that the coefficients of variation (CV) for the reproducibility of the extraction procedure for 137Cs was (with some exceptions) around 10-20% for all fractions. For the small scale variability of 137Cs (samples within an area of 10 x 10 m2) the values for the CV were (again with a few exceptions) in the same range. Compared to that, the large scale variability of extractable 137Cs (random soil samples within an area of 100 x 200 km2) was higher for all fractions, even though only moderately. The implications of these results with respect to a sampling design are discussed. (author)

  8. Smiles: a fortran-77 program for sequential machine interpreted lineament extraction using digital images

    Science.gov (United States)

    Raghavan, Venkatesh; Wadatsumu, Kiyoshi; Masumoto, Shinji

    1994-03-01

    A FORTRAN-77 program Sequential Machine Interpreted Lineament Extraction System (SMILES) is presented, which is useful for automatic and manual extraction of lineament information from digital images. The SMILES is a stand-alone package composed of several modules which perform the function of image display, lineament information extraction, data management, output generation, and preliminary analysis. The program architecture and application results are described. The program has been tested using LANDSAT MSS data of southwestern Japan. The Directional Segment Detection Algorithm (DSDA) also has been applied to shaded relief maps generated from digital elevation data of the same area. Interpretation of aerial photograph stereo pairs reveals that the machine interpreted features show photogeological expressions that are characteristic of geologic lineaments.

  9. Uranium isotopic distribution in the mineral phases of granitic fracture fillings by a sequential extraction procedure

    International Nuclear Information System (INIS)

    In order to study the recent rock-water interaction processes in the El Berrocal site, a sequential leaching method has been applied to granitic fracture fillings to obtain the U isotopic distribution in the mineral phases of these samples. Based on the mineralogical composition of these materials, six dissolution steps have been chosen to extract U as exchangeable cation, from carbonates, amorphous Fe-oxyhydroxides, labile resistates and highly insoluble resistates. In this way, the processes involved in the rock-water interaction phenomena, mainly dissolution, precipitation, coprecipitation and adsorption can be distinguished and even approximately dated. (author)

  10. Operationally defined availability from sequential extractions compared to plant uptake of 137Cs and 90Sr

    International Nuclear Information System (INIS)

    The operationally defined bioavailable fraction from a commonly used sequential extraction (SE) procedure was compared to biological availability represented by plant uptake of 137Cs and 90Sr. Experiments were conducted at two locations in the Ukraine and at several field locations on the Savannah River Site, South Caroline. A significant regression existed between plant uptake and the ammonium acetate fraction (r2=0.65), however, ratios of predicted uptake from the SE procedure to observed plant uptake ranged from 0.03 to 5.2. Data suggest that the SE procedure was useful for qualitative interpretations of biological availability but lacked sufficient rigor to be useful for quantitative predictions. (author)

  11. Preparative yield and properties of humic acids obtained by sequential alkaline extractions

    Science.gov (United States)

    Kholodov, V. A.; Yaroslavtseva, N. V.; Konstantinov, A. I.; Perminova, I. V.

    2015-10-01

    The preparative yield, composition, and structure of humic acids obtained by sequential alkaline extractions from two soils (a soddy-podzolic soil under forest and a typical chernozem in treatment with permanent black fallow of a long-term experiment since 1964) have been studied. The preparative yield of humic acids from the first extraction is 0.40 and 0.94% for the soddy-podzolic soil (Retisols) and the chernozem, respectively. The preparative yield from the second extraction is lower by several times, and the yield from the third extraction is lower by an order of magnitude. The study of the obtained preparations by elemental analysis, gel-permeation chromatography, and 13C NMR spectroscopy has shown insignificant changes in the elemental, molecular-weight, and structural-group composition of humic acids among the extractions. It has been supposed that this is related to the soil features: typical climatic factors for the formation of soil subtype in the case of soddy-podzolic soil and the land use in the long-term experiment in the case of typical chernozem. It has been concluded that that a single extraction is sufficient for the separation of humic acids and the preparation of a representative sample.

  12. Sorption of Cu(2+) on humic acids sequentially extracted from a sediment.

    Science.gov (United States)

    Yang, Kun; Miao, Gangfen; Wu, Wenhao; Lin, Daohui; Pan, Bo; Wu, Fengchang; Xing, Baoshan

    2015-11-01

    In addition to the diverse properties of humic acids (HAs) extracted from different soils or sediments, chemical compositions, functional groups and structures of HAs extracted from a single soil or sediment could also be diverse and thus significantly affect sorption of heavy metals, which is a key process controlling the transfer, transformation and fate of heavy metals in the environment. In this study, we sequentially extracted four HA fractions from a single sediment and conducted the sorption experiments of Cu(2+) on these HA fractions. Our results showed that aromaticity and acidic group content of HA fraction decreased with increasing extraction. Earlier extracted HA fraction had higher sorption capacity and affinity for Cu(2+). There were two fractions of adsorbed Cu(2+) on HAs, i.e., ion exchanged fraction and surface bonded fraction, which can be captured mechanically by the bi-Langmuir model with good isotherm fitting. The ion exchanged fraction had larger sorption capacity but lower sorption affinity, compared with the surface bonded fraction. The dissociated carboxyl groups of HAs were responsible for both fractions of Cu(2+) sorption, due to the more Cu(2+) sorption on the earlier extracted HA fraction with more carboxyl groups and at higher pH. The intensive competition between H(+) and the exchangeable Cu(2+) could result in the decrease of ion exchanged capacity and affinity for Cu(2+) on HAs. PMID:26246274

  13. A comparison between heavy metals released from soil and its efficient speciation extracted by sequential extraction procedure

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hui

    2008-01-01

    A simulating experiment was carried out on the interaction between natural precipitation and soil. The results demonstrated that the contents of heavy metals (V, Co, Cr, and Ni) released from soil into the solution under Earth's surface conditions are higher than the contents of those metals bonded to exchangeable species, which were extracted by sequential extraction procedure recommended by Tessier and others in 1979. It is demonstrated that the metals bonded to other 3 species (carbonate, Fe-Mn oxide, and organic matter) except those bonded to the exchangeable species in efficient speciation can be released under the Earth's surface conditions, when pH=4 in the reaction system, and the higher correlation coefficient indicated that the concentrations of heavy metals released from soil into the solution vary approximately with reaction time in terms of index regulations.

  14. Determination and Fractionation of heavy Metals in Sediments from Yarmouk River, Jordan by Sequential Extraction

    International Nuclear Information System (INIS)

    The fractionation of the eight metals Pb, Ni, Zn, Co, Cr, Mn, Fe and Cd in Yarmouk River were determined by applying a sequential extraction procedure. The potential environmental impacts of the metals estimated through the five extraction categories, that's exchangeable, bound to carbonate, bound to Fe/Mn oxides, bound to organic matter and the residual. The results show that the sediments of the Yarmouk River would be moderately to heavily polluted fluvial systems in the region. The observed metal distribution patterns in the different sediment fractions, however, indicated that the major proportions of most metals seemed to be associated with the residual fraction which consists essentially of detrital silicate minerals, resistant sulfides, and a small quantity of refractory organic material that could therefore be classified to be of geochemical origin. (Author's) 14 refs., 4 tabs., 4 figs

  15. Study on geochemical association of plutonium in soil using sequential extraction procedure

    International Nuclear Information System (INIS)

    Three kinds of soil, collected in various places (in northwestern and southeastern Poland and near Chernobyl) were used as a subject of sequential extraction and plutonium distribution study. The modified method of TESSIER was applied to separate readily available, carbonate, organic, Fe/Mn oxide and residual fractions. Plutonium isotope activity in soil as well as in particular separated fractions was determined by means of alpha spectrometry. The method of plutonium separation and purification for alpha-spectrometric measurements was modified according to the chemical properties of the extracted fraction. It was found that the major part (about 90%) of 239,240Pu is bound to organic and Fe/Mn oxide fractions (in uncultivated soil samples of northwestern Poland and Chernobyl). In soil samples coming from river valley (southeastern Poland) almost equal amounts of plutonium are distributed between the available, organic and residual fractions. (author)

  16. Main: 1BCR [RPSD[Archive

    Lifescience Database Archive (English)

    Full Text Available 1BCR 小麦 Bread Wheat ... Triticum aestivum Serine Carboxypeptidase Ii Chains A And B Name=Cbp2; Tri ... .Remington 1bcr 25 Peptide Aldehyde Complexes With Wheat ... Serine 1bcr 26 Carboxypeptidase Ii 1bcr 27to Be Pu ... Microbial Peptide Aldehyde Inhibitor 1bcr 21 CBP2_WHEAT :259,6|CBP2_WHEAT :417,266|PIR; A29639; A29639.|PDB; ...

  17. Arsenic speciation and bioaccessibility in arsenic-contaminated soils: Sequential extraction and mineralogical investigation

    International Nuclear Information System (INIS)

    In this study, a combination of sequential extraction and mineralogical investigation by X-ray diffraction and X-ray photoelectron spectroscopy was employed in order to evaluate arsenic solid-state speciation and bioaccessibility in soils highly contaminated with arsenic from mining and smelting. Combination of these techniques indicated that iron oxides and the weathering products of sulfide minerals played an important role in regulating the arsenic retention in the soils. Higher bioaccessibility of arsenic was observed in the following order; i) arsenic bound to amorphous iron oxides (smelter-2), ii) arsenic associated with crystalline iron oxides and arsenic sulfide phase (smelter-1), and iii) arsenic associated with the weathering products of arsenic sulfide minerals, such as scorodite, orpiment, jarosite, and pyrite (mine). Even though the bioaccessibility of arsenic was very low in the mine soil, its environmental impact could be significant due to its high arsenic concentration and mobility. Highlights: • Combination of sequential extraction and mineralogical investigation was employed. • Arsenic was primarily associated with iron oxides and sulfide minerals in soils. • Bioaccessibility of arsenic was affected by arsenic solid-phase speciation. -- We investigated arsenic solid-state speciation in soils, which is crucial for risk assessment and developing suitable remediation strategies in arsenic contaminated sites

  18. Uranium distribution in mineral phases of rock by sequential extraction procedure

    International Nuclear Information System (INIS)

    A sequential extraction procedure was used to study the distribution of uranium in mineral phases of rock at the Koongarra uranium deposit (Northern Territory of Australia). This work forms a part of the natural analogue study carried out in the International Alligator Rivers Analogue Project, which is being sponsored by the OECD/NEA. The following mineral phases: adsorbed trace material and carbonate minerals, amorphous iron minerals and secondary uranium minerals, crystalline iron minerals, clay minerals, and remaining resistant mineral phases, were extracted successively by treatment with: 1 M sodium acetate (pH=5) (Morgan's solution). Tamm's acid oxalate (TAO) (pH=3), citrate-dithionite-bicarbonate (CDB), 6 M hydrochloric acid, and fusion respectively. The majority of uranium in samples from the secondary ore body at Koongarra was contained in crystalline iron minerals (42-60%). In the primary or body, the uranium distribution between mineral phases varies with depth. About 70% of the total uranium was incorporated with the Tamm's extractable mineral phases, in the weathered region of the drill hole DDH1 (19.4-20.5 m). In the deeper region of the drill hole DDH2 (33.0-34.3 m), most of the uranium was extractable with 6 M HCl. The 234U/238U activity ratios in each extraction are discussed on the basis of the alpha recoil effect, which occurs with the decay of 238U through 234Th to 234U. (orig.)

  19. Assessment of a sequential extraction protocol by examining solution chemistry and mineralogical evolution

    Science.gov (United States)

    Maubec, Nicolas; Pauwels, Hélène; Noël, Hervé; Bourrat, Xavier

    2015-04-01

    Knowledge of the behavior of heavy metals, such as copper and zinc in sediments, is a key factor to improve the management of rivers. The mobility of these metals, which may be harmful to the environment, depends directly on their concentration and speciation , which in turn depend on physico-chemical parameters such as mineralogy of the sediment fraction, pH, redox potential, salinity etc ... (Anderson et al., 2000; Sterckeman et al., 2004; Van Oort et al., 2008). Several methods based on chemical extractions are currently applied to assess the behavior of heavy metals in soils and sediments. Among them, sequential extraction procedure is widely used in soil and sediment science and provides details about the origin, biological and physicochemical availability, mobilization and transports of trace metals elements. It is based on the use of a series of extracting reagents to extract selectively heavy metals according to their association within the solid phase (Cornu and Clozel, 2000) including the following different fraction : exchangeable, bound to carbonates, associated to oxides (reducible fraction), linked to organic matter and sulfides (oxidizable fraction) as well as silicate minerals so called residual fraction (Hickey and Kittrick, 1984; Tessier et al., 1979). Consequently sequential extraction method is expected to simulate a lot of potential natural and anthropogenic modifications of environmental conditions (Arey et al., 1999; Brannon and Patrick, 1987; Hickey and Kittrick, 1984; La Force et al., 1999; Tessier et al., 1979). For three decades, a large number of protocols has been proposed, characterized by specific reagents and experimental conditions (concentrations, number of steps, extraction orders and solid/solution ratio) (Das et al., 1995; Gomez Ariza et al., 2000; Quevauviller et al., 1994; Rauret, 1998; Tack and Verloo, 1995), but it appeared that several of them suffer from a lack of selectivity of applied reagents: besides target ones, some

  20. Comparison of Different Extraction Approaches for Heavy Metal Partitioning in Sediment Samples

    Institute of Scientific and Technical Information of China (English)

    M.B.ARAIN1,; T.G.KAZI; M.K.JAMALI; J.A.BAIG; H.I.AFRIDI; N.JALBANI; R.A.SARFRAZ

    2009-01-01

    Three extraction methods,ultrasonic assisted extraction (USE),microwave assisted extraction (MSE),and conven tional single extraction (CSE),in conjunction with the modified three-stage BCR sequential extraction procedure (SEP)were applied to examine the contents of Cd,Cu,Cr,Ni,Pb and Zn from lake sediment samples,to know whether these techniques can reduce extraction time and improve reproducibility.The SEP and developed alternative single extraction methods were validated by the analysis of certified reference material BCR 601.By the use of optimized sonication and microwave conditions,steps 1,2 and 3 of the BCR sequential extraction methods (excluding the hydrogen peroxide digestion in step 3,which was not performed with sonication and microwave) could be completed in 15-30 min and 60150 s,respectively.The recoveries of total extractable metal contents in BCR 601,obtained by three single extractions ranged from 93.3%-102%,88.9%-104% and 81.2%-96.2% for CSE,USE and MSE,respectively.The precision of the single extraction methods was found in the range of 3.7%-9.4% for all metals (n=6).

  1. Selectivity assessment of an arsenic sequential extraction procedure for evaluating mobility in mine wastes

    International Nuclear Information System (INIS)

    Highlights: • Extraction efficiency and selectivity of phosphate and oxalate were tested. • Pure As-bearing mineral phases and mine wastes were used. • The reagents were found to be specific and selective for most major forms of As. • An optimized sequential extraction scheme for mine wastes has been developed. • It has been tested over a model mineral mixtures and natural mine waste materials. - Abstract: An optimized sequential extraction (SE) scheme for mine waste materials has been developed and tested for As partitioning over a range of pure As-bearing mineral phases, their model mixtures, and natural mine waste materials. This optimized SE procedure employs five extraction steps: (1) nitrogen-purged deionized water, 10 h; (2) 0.01 M NH4H2PO4, 16 h; (3) 0.2 M NH4-oxalate in the dark, pH3, 2 h; (4) 0.2 M NH4-oxalate, pH3/80 °C, 4 h; (5) KClO3/HCl/HNO3 digestion. Selectivity and specificity tests on natural mine wastes and major pure As-bearing mineral phases showed that these As fractions appear to be primarily associated with: (1) readily soluble; (2) adsorbed; (3) amorphous and poorly-crystalline arsenates, oxides and hydroxosulfates of Fe; (4) well-crystalline arsenates, oxides, and hydroxosulfates of Fe; as well as (5) sulfides and arsenides. The specificity and selectivity of extractants, and the reproducibility of the optimized SE procedure were further verified by artificial model mineral mixtures and different natural mine waste materials. Partitioning data for extraction steps 3, 4, and 5 showed good agreement with those calculated in the model mineral mixtures (<15% difference), as well as that expected in different natural mine waste materials. The sum of the As recovered in the different extractant pools was not significantly different (89–112%) than the results for acid digestion. This suggests that the optimized SE scheme can reliably be employed for As partitioning in mine waste materials

  2. Uranium distribution in mineral phases or rocks by a five phase sequential extraction procedure

    International Nuclear Information System (INIS)

    Sequential extraction techniques are used to measure the fractionation of uranium and thorium series nuclides in iron/clay/quartz phases etc. as part of the uranium/thorium desequilibria database preparation and understand how the two (or more) separated phases are related to the ore minerals and their accessibility to groundwater. Samples have been characterized for elemental associations and mineralogical distributions. Special attention was given to those elements which have particular significance for the geochemical modelling including species such as phosphate. In the secondary ore body, crystalline iron minerals such as limonite and pyrite appear as the significant mineral phase associated with uranium accumulation. The Morgan's and Tamm's solution extractable minerals (adsorbed and carbonate, and amorphous iron minerals respectively) are accessible to groundwater and so their 234U/238U activity ratios, less than unity, are equal to that of the groundwater. The remaining resistant minerals (mainly quartz) are the significant mineral phase found to be enrich with 234U by the alpha recoil effect. However, in the shallow region of the primary ore body, the Tamm's solution extractable minerals (secondary uranium minerals such as autunite and torbernite - uranyl phosphates) are the significant mineral phase associated with the uranium accumulation. In the deeper region of the primary ore body, the 6 M HCl extractable minerals (clay and some refactory minerals) seems to be predominant. 5 refs., 1 tab., 3 figs

  3. Development of a sequential extraction method for different forms of phosphorus in Bovilla lake sediments

    Directory of Open Access Journals (Sweden)

    Loreta Vallja

    2013-12-01

    Full Text Available Extractable forms of phosphorus are studied more widely than the extractable forms of most other elements. The main reason for this is because P is the key element in aquatic chemistry of lakes being a limiting nutrient in the growth of algae under many conditions. Exchange with bottom sediments place an important role in making P available for algae and contributes, therefore to eutrophication. Many extraction schemes have been developed to determine different forms of P in sediments. The objective of the present study was to estimate the bioavailability/mobility of phosphate from Bovilla lake sediments using a sequential extraction procedure and to evaluate their possible contributions to the P-loadings the lake. Results for three stations of Bovilla Lake are presented. A relatively high total phosphorus content of 452 mg/kg DW have been found in sediment samples taken from three sites of Bovilla Lake. This shows an important potential of sediments to release the P compounds, especially under anoxic conditions.

  4. A study on radionuclide association with soil components using a sequential extraction procedure

    International Nuclear Information System (INIS)

    Measurements performed in 1986-1988 demonstrate that most of the radiocesium isotopes (137Cs and 134Cs) deposited after the Chernobyl accident are still located in the upper soil layers (0-2 cm). Sequential extraction techniques have been utilized in order to investigate the degree of binding or association between deposited radionuclides (137Cs, 134Cs and 90Sr) and components in soil. The results indicate that a major fraction of the radiocesium is associated strongly with organic and mineral materials in the litter or upper soil layers: less than 10% is easily leachable. For 90Sr, the results show a relatively high leachable fraction. It is concluded that radiocesium should be less mobile, and less available for root uptake, than 90Sr in soil. (author) 9 refs.; 4 figs.; 1 tab

  5. Evaluation of a sequential extraction method for determining actinide fractionation in soils and sediments

    International Nuclear Information System (INIS)

    A sequential chemical extraction method for the determination of the geochemical fractionation of Am, Pu, and U was evaluated rigorously on a single marine sediment standard (IAEA-135). Partitioning of actinides was operationally defined for five reagent fractions and stable element analyses (Al, Ca, Fe, Mn, Ti, etc.) were performed to assist in establishing the phase specificity of the extractions. The method produces, in general, results that agree to within a one standard deviation interval for replicate measurements for each fraction. Actinide readsorption, examined by a double-spiking technique, was found to be significant in some cases. Ethylenediamine-tetraacetic acid (EDTA) was examined as a hold-back reagent to lessen the effect of readsorption but seriously compromised the phase selectivity of the extractants. In addition, the use of NaOCl for the destruction of organic matter was found to dissolve carbonates out of sequence and is not recommended for carbonate-bearing materials. (Copyright (c) 1988 Elsevier Science B.V., Amsterdam. All rights reserved.)

  6. Evaluation of dissipation gradients of polycyclic aromatic hydrocarbons in rice rhizosphere utilizing a sequential extraction procedure

    International Nuclear Information System (INIS)

    The aim of this study was to evaluate the spatial dissipation gradient of PAHs, including phenanthrene, pyrene, and benzo[a]pyrene, with various bioavailability represented with sequential extraction. Dissipation rates of PAHs in the rhizosphere were greater than those in the bulk soil. The n-butanol extracted fraction showed a general trend of dissipation during phytoremediation. Moreover, the formation of bound PAH residues was inhibited in the rhizosphere. While concerning the PAH toxicity, the reduction rates of PAH toxicity were significantly greater than total soil PAH concentrations. Microbial biomass was the highest at four mm away from the root surface. However, the PAH dissipation rates were the highest at one mm and two mm away from the root surface in high and low PAH treatments, respectively. These results suggest that rhizoremediation with rice is a useful approach to reduce the toxicity of PAHs in soil. - Highlights: ► Dissipation gradients were different in soils spiked with different PAHs concentrations. ► Butanol extracted fraction indicated the remediation in rhizosphere. ► Toxicity of PAHs was more efficiently reduced than total concentration. ► Promotion of PAHs degraders was not synchronized with microbial biomass. - Stimulation of PAH degradation in rice rhizosphere was not simultaneous with microbial biomass.

  7. A novel approach to the sequential extraction of plutonium from oxic and anoxic sediment using sodium citrate to inhibit post-extraction resorption

    International Nuclear Information System (INIS)

    Sequential extraction has been used extensively to study the solid partitioning of radionuclides in soils and sediments. A difficulty with sequential extraction is that radionuclides released by a particular extractant can be resorbed and artificially redistributed amongst the remaining solid phases. Here, we describe experiments (on selected model phase and natural materials), which were designed to determine whether the inclusion of a chelating agent (sodium citrate) in an established sequential extraction protocol (a) inhibits post-extraction resorption of plutonium, (b) increases non-targeted dissolution of sediment phases, and (c) gives rise to unwanted ligand competition for plutonium. The results clearly demonstrate the capacity of citrate to inhibit the resorption of plutonium from the various extractants, and confirm that there is no discernible increase in non-targeted phase dissolution, but indicate significant ligand competition with the carbonate phase. The merits of using citrate are discussed and an optimised sequential extraction protocol that includes citrate is proposed. Finally, the protocol is applied to oxic and anoxic sediments sampled in the NE Irish Sea and the Roads of Cherbourg, and it is shown that the bulk of the plutonium on these sediments is associated with the more labile geochemical fractions

  8. SEQUENTIAL EXTRACTION OF PHOSPHORUS BY MEHLICH-1 AND ION EXCHANGE RESIN FROM B HORIZONS OF FERRIC AND PERFERRIC LATOSOLS (OXISOLS

    Directory of Open Access Journals (Sweden)

    Danilo de Lima Camêlo

    2015-08-01

    Full Text Available In general, Latosols have low levels of available P, however, the influence of the parent material seems to be decisive in defining the pool and predominant form of P in these soils. This study evaluated P availability by extraction with Mehlich-1 (M-1 and Ion Exchange Resin (IER, from samples of B horizons of Ferric and Perferric Latosols developed from different parent materials. To this end, in addition to the physical and chemical characterization of soils, 10 sequential extractions were performed with M-1 and IER from samples of B horizons (depth between 0.8 and 1.0 m. Total contents of Ca, P, Fe, Al, and Ti were determined after digestion with nitric, hydrofluoric and perchloric acids. The effects of sequential P extractions on Fe oxides were also evaluated from the analyses of dithionite-citrate-bicarbonate and ammonium acid oxalate. The high similarity between contents of P accumulated after sequential extractions with M-1 and IER in soils developed on tuffite indicated a predominance of P-Ca. Higher contents of P after a single IER extraction show greater efficiency in P removal from highly weathered soils, as from the Latosols studied here. The P contents also show the high sensitivity of extractant M-1 in highly buffered soils. Furthermore, a single extraction with extractant M-1 or IER is not sufficient to estimate the amount of labile P in these soils.

  9. Comparison of two sequential extraction procedures for uranium fractionation in contaminated soils

    International Nuclear Information System (INIS)

    Two sequential extraction procedures were carried out on six soils with different chemical properties and contamination history to estimate the partitioning of uranium (U) between different soil fractions. The first standard method (method of Schultz) was specifically developed for actinides, while the second one (method of Rauret) was initially created for heavy metals. Reproducibility of both methods was compared by means of the coefficient of variation (CV). A soil-to-plant transfer experiment was also carried out with ryegrass to verify if one of the extracted fractions efficiently predicted plant uptake. In artificially contaminated soils, most of the U was retrieved from the exchangeable and the carbonates fractions. In soils with high natural levels of U or contaminated by industrial activity, most of the U was found in the less available fractions. Different U concentrations were found in the fractions which were supposed to be comparable in the two methods. Extracted fractions following Schultz differentiated more strongly between the tested soils but no relationships with soil parameters could be established. As expected, the highest U transfer factors (TF) were observed for ryegrass grown on artificially contaminated soils and the lowest on soils with high natural concentrations or industrial contamination, in agreement with the extraction procedures. No good relation was found between the soil-to-shoot TF and the extracted U concentrations. On the other hand, the U concentration in the roots, the U concentration in the shoots and the soil-to-root TF are well correlated to the U concentration determined in the first extracted fractions (so called exchangeable fractions) from the method of Schultz. We conclude that the extraction method according to Schultz should be preferably used for U, and that the exchangeable fraction can be proposed as a potential indicator to evaluate plant uptake in soils. - Highlights: • U in exchangeable and carbonate

  10. Assessment of lead distribution in aquatic plant Lemna minor, using sequential extraction procedure

    International Nuclear Information System (INIS)

    Complete text of publication follows. The contamination of water resources by toxic metals demands for attention since this kind of contamination, sometimes, is difficult to realize. Moreover, lead, for instance, has the capacity to be accumulated in fish and plants utilized in the food, and also in human beings, causing several disturbances. Phytoremediation is an emerging technology that employs the use of plants for the clean-up of contaminated environments. The model plant Lemna minor is a genera of Duckweed plant, and refers to a group of floating, flowering plants of the family Lemnaceae. The aquatic plant Lemna minor is relevant to many aquatic environments, including lakes, streams, effluent, rain, and sediment. The aquatic plant Lemna minor has been studied due its potential to extract lead from contaminated waters. The aim of this study was to determine the distribution of Pb in the aquatic plant Lemna minor under stress, using a modified sequential extraction with different solvents: hexane, ethyl acetate, 2-propanol, methanol, ethanol/water (1:1) and water. Non-extractable residues formed the last fraction. Elemental distributions in the plants were determined using flame atomic absorption spectroscopy (F AAS), and scanning electron microscopy coupled with energy dispersive X-ray microanalysis (SEM-EDX). It was found that the aquatic plant L. minor has the capacity to accumulate lead: in the first day of contamination, about 79% of lead had been intake by the plant. After 7 days, the Pb content was 142 mg Kg-1. After sequential extraction, the methanol and ethanol/water fractions were dominants: 27 and 45% of total content, respectively. In these fractions we can find acids that form specific chelating agents, such as oligopeptides (phytochelatins). The hexane, ethyl acetate, and 2-propanol fractions gave the smallest isolated fraction. These fractions consisted of non-polar lipid compounds. Elemental distribution by X-ray fluorescence spectra and maps

  11. Sequential Extraction and Spectroscopic Characterisation of Organic Matter from the Callovo-Oxfordian Formation

    Energy Technology Data Exchange (ETDEWEB)

    Grasset, L.; Brevet, J; Schäfer, T; Claret, F; Gaucher, E; Albrecht, A; Amblès, A

    2010-01-01

    One site under consideration for the disposal of medium and high level, long lived radioactive waste is in the eastern part of the Paris Basin (Meuse/Haute Marne, France), where the National Radioactive Waste Management Agency (ANDRA) operates an underground laboratory. The sedimentary host formation is a 130 m thick, clay-rich Callovo-Oxfordian deposit ca. 350-550 m below ground in the selected area. The major fraction (>95%) of the organic matter (OM) is associated with minerals. In order to better understand the importance of OM on the chemistry of this formation, we have developed a protocol allowing extraction/fractionation of organic compounds in the rocks. The protocol is based on classical methods currently used for the isolation of humic substances from soils and for the separation of kerogen in ancient sediments using sequential extraction with solvents and water at different pH value. This allows us to the remove a large part of the minerals and to suspend almost all (>90%) of the OM (associated with residual recalcitrant minerals) in water. The OM can then be analysed via spectroscopic methods, such as mass spectrometry (MS), Fourier transform infra-red spectroscopy (FTIR), or C (1s) near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. The molecular composition of the solvent-soluble, directly-extractable part shows the OM to be thermally immature. The solvent-soluble fractions obtained after acid and alkaline treatments are mostly polar in nature and have a high degree of aliphaticity. C(1s) NEXAFS analysis of water soluble organic fractions indicates a progressive increase in aliphaticity and a decrease in carboxylic/carbonyl groups with consecutive extraction steps.

  12. Competitive Complexation of Copper and Zinc by Sequentially Extracted Humic Substances from Manure Compost

    Institute of Scientific and Technical Information of China (English)

    LIU Shuai; WANG Xu-dong; LU Li-lan; DIAO Shi-rong; ZHANG Jun-feng

    2008-01-01

    Chicken manure with similar content of copper and zinc was chosen to conduct a composting experiment to investigate the changes of organic carbon and humus substance complexed copper (HS-Cu) and zinc (HS-Zn), which were extracted by water (H2O), sodium hydroxide (NaOH), and sodium pyrophate-NaOH mixture (Na4P2O7-NaOH), sequentially. Distributions of copper and zinc in fulvic acids (FA) and humic acids (HA) in the three extracts were studied. During manure composting, the concentrations of copper and zinc increased from about 500 mg kg-' in the raw material to 1100 mg kg-1 in the final products. HS-Cu in H2O, NaOH, and Na4P2O7-NaOH extracts occupied 6.7, 26.7, and 19% averagely of total copper and HS-Zn represented 2.7, 13.7, and 17% averagely of total zinc in compost, respectively. In water extracts, both HA and FA mainly complexed with Cu and the mole ratio of Cu to Zn was 2.8 in HA fractions and was 2.6 in FA fractions, respectively. HA mainly complexed with copper, so that the ratios of HA-Cu to HA-Zn averaged 3.4 in NaOH extracts. FA had a similar potential to complex with copper and zinc, so that the ratio of FA-Cu to FA-Zn was close to 1. In Na4P2O7-NaOH extracts, HA or FA had a similar potential to complex with copper and zinc. The ratio of HS-Cu to HS-Zn was close to 1. With manure composting, Na4P2O7-NaOH extractable HS-Zn increased to a level as high as HS-Cu. This indicated that more and more stable complexes of HS-Zn were formed in the late decomposition period. The competition between copper and zinc to be complexed with humic substance became weaker and weaker with the decomposition process.

  13. Extraction of cocoa proanthocyanidins and their fractionation by sequential centrifugal partition chromatography and gel permeation chromatography.

    Science.gov (United States)

    Pedan, Vasilisa; Fischer, Norbert; Rohn, Sascha

    2016-08-01

    Cocoa beans contain secondary metabolites ranging from simple alkaloids to complex polyphenols with most of them believed to possess significant health benefits. The increasing interest in these health effects has prompted the need to develop techniques for their extraction, fractionation, separation, and analysis. This work provides an update on analytical procedures with a focus on establishing a gentle extraction technique. Cocoa beans were finely ground to an average particle size of HPLC/MS). Fractions of bioactive compounds were separated by combining sequential centrifugal partition chromatography (SCPC) and gel permeation column chromatography using Sephadex LH-20. For SCPC, a two-phase solvent system consisting of ethyl acetate/n-butanol/water (4:1:5, v/v/v) was successfully applied for the separation of theobromine, caffeine, and representatives of the two main phenolic compound classes flavan-3-ols and flavonols. Gel permeation chromatography on Sephadex LH-20 using a stepwise elution sequence with aqueous acetone has been shown for effectively separating individual flavan-3-ols. Separation was obtained for (-)-epicatechin, proanthocyanidin dimer B2, trimer C1, and tetramer cinnamtannin A2. The purity of alkaloids and phenolic compounds was determined by HPLC analysis and their chemical identity was confirmed by mass spectrometry. PMID:27318471

  14. Application of sequential extraction analysis to electrokinetic remediation of cadmium, nickel and zinc from contaminated soils

    Energy Technology Data Exchange (ETDEWEB)

    Giannis, Apostolos, E-mail: apostolos.giannis@enveng.tuc.gr [Department of Environmental Engineering, Technical University of Crete, Politechnioupolis, Chania 73100 (Greece); Pentari, Despina [Department of Mineral Resources Engineering, Technical University of Crete, Politechnioupolis, Chania 73100 (Greece); Wang, Jing-Yuan [Residues and Resource Reclamation Centre (R3C), Nanyang Technological University, 50 Nanyang Avenue, 639798 Singapore (Singapore); Gidarakos, Evangelos, E-mail: gidarako@mred.tuc.gr [Department of Environmental Engineering, Technical University of Crete, Politechnioupolis, Chania 73100 (Greece)

    2010-12-15

    An enhanced electrokinetic process for the removal of cadmium (Cd), nickel (Ni) and zinc (Zn) from contaminated soils was performed. The efficiency of the chelate agents nitrilotriacetic acid (NTA), diethylenetriaminepentaacetic acid (DTPA) and diaminocycloexanetetraacetic acid (DCyTA) was examined under constant potential gradient (1.23 V/cm). The results showed that chelates were effective in desorbing metals at a high pH, with metal-chelate anion complexes migrating towards the anode. At low pH, metals existing as dissolved cations migrated towards the cathode. In such conflicting directions, the metals accumulated in the middle of the cell. Speciation of the metals during the electrokinetic experiments was performed to provide an understanding of the distribution of the Cd, Ni and Zn. The results of sequential extraction analysis revealed that the forms of the metals could be altered from one fraction to another due to the variation of physico-chemical conditions throughout the cell, such as pH, redox potential and the chemistry of the electrolyte solution during the electrokinetic treatment. It was found that binding forms of metals were changed from the difficult type to easier extraction type.

  15. Application of sequential extraction analysis to electrokinetic remediation of cadmium, nickel and zinc from contaminated soils.

    Science.gov (United States)

    Giannis, Apostolos; Pentari, Despina; Wang, Jing-Yuan; Gidarakos, Evangelos

    2010-12-15

    An enhanced electrokinetic process for the removal of cadmium (Cd), nickel (Ni) and zinc (Zn) from contaminated soils was performed. The efficiency of the chelate agents nitrilotriacetic acid (NTA), diethylenetriaminepentaacetic acid (DTPA) and diaminocycloexanetetraacetic acid (DCyTA) was examined under constant potential gradient (1.23 V/cm). The results showed that chelates were effective in desorbing metals at a high pH, with metal-chelate anion complexes migrating towards the anode. At low pH, metals existing as dissolved cations migrated towards the cathode. In such conflicting directions, the metals accumulated in the middle of the cell. Speciation of the metals during the electrokinetic experiments was performed to provide an understanding of the distribution of the Cd, Ni and Zn. The results of sequential extraction analysis revealed that the forms of the metals could be altered from one fraction to another due to the variation of physico-chemical conditions throughout the cell, such as pH, redox potential and the chemistry of the electrolyte solution during the electrokinetic treatment. It was found that binding forms of metals were changed from the difficult type to easier extraction type. PMID:20833468

  16. Application of sequential extraction analysis to electrokinetic remediation of cadmium, nickel and zinc from contaminated soils

    International Nuclear Information System (INIS)

    An enhanced electrokinetic process for the removal of cadmium (Cd), nickel (Ni) and zinc (Zn) from contaminated soils was performed. The efficiency of the chelate agents nitrilotriacetic acid (NTA), diethylenetriaminepentaacetic acid (DTPA) and diaminocycloexanetetraacetic acid (DCyTA) was examined under constant potential gradient (1.23 V/cm). The results showed that chelates were effective in desorbing metals at a high pH, with metal-chelate anion complexes migrating towards the anode. At low pH, metals existing as dissolved cations migrated towards the cathode. In such conflicting directions, the metals accumulated in the middle of the cell. Speciation of the metals during the electrokinetic experiments was performed to provide an understanding of the distribution of the Cd, Ni and Zn. The results of sequential extraction analysis revealed that the forms of the metals could be altered from one fraction to another due to the variation of physico-chemical conditions throughout the cell, such as pH, redox potential and the chemistry of the electrolyte solution during the electrokinetic treatment. It was found that binding forms of metals were changed from the difficult type to easier extraction type.

  17. Evaluating bioavailability of organic pollutants in soils by sequential ultrasonic extraction procedure.

    Science.gov (United States)

    Wu, Xiang; Zhu, Lizhong

    2016-08-01

    Under current retrospective risk assessment framework, the total concentrations of organic pollutants in soils have been employed as the standard for over 30 years. The total concentrations reflect the overall accumulation in soils but tend to be overly conservative for assessing the ecological risks, where the bioavailability plays an important role. In this study, the bioavailability of organic pollutants in soils was evaluated using a stepwise and tiered classification method, namely the sequential ultrasonic extraction procedure (SEUP). The water-soluble and acid-soluble fractions extracted by the SEUP were the bioavailable fractions. The reliability and environmental relevance of the speciation method were examined with representative organic pollutants using the root uptake methods and the semipermeable membrane devices (SPMDs). The plant uptake amounts corrected with weight were highly correlated with the bioavailable fractions (R(2) > 0.75). The amounts of the bioavailable fractions were negatively correlated with the logKow values (R(2) ranging from 0.71 to 0.77) of the organic pollutants and the contents of soil organic matter (R(2) ranging from 0.68 to 0.96). As a refinement of the current risk assessment framework, the SUEP that has proved to be a reliable and convenient is thus highly recommended for evaluating the bioavailability of organic pollutants in soils. PMID:27156212

  18. The carbon distribution among the functional groups of humic acids isolated by sequential alkaline extraction from gray forest soil

    Science.gov (United States)

    Kholodov, V. A.; Konstantinov, A. I.; Perminova, I. V.

    2009-11-01

    Preparations of humic acids (HAs) were isolated from a gray forest soil by sequential alkaline extraction. From a sample of 500 g, HA preparations of 2.24, 0.23, and 0.20 g were obtained from the first, second, and third alkaline extracts, respectively. The structure of the preparations was determined by 13C NMR spectroscopy. At each next extraction step, the portion of aliphatic fragments in the HA preparations increased and the content of aromatic structures decreased. The conclusion was drawn that a single extraction is sufficient for obtaining a representative HA sample.

  19. Heavy-metal speciation of contaminated soils by sequential extraction and X-ray absorption fine structure spectroscopy (XAFS)

    International Nuclear Information System (INIS)

    The sequential extraction procedure of Forstner and Salomons of two highly lead-contaminated soil samples was investigated by XAFS using a two-step evaluation method. Data reduction was done to obtain comparable spectra and linear combinations of reference spectra were used to approximate the spectra of samples and to evaluate the amounts of the main reference compounds. (authors)

  20. ASSESSMENT OF A SEQUENTIAL EXTRACTION PROCEDURE FOR PERTURBED LEAD-CONTAMINATED SAMPLES WITH AND WITHOUT PHOSPHOROUS AMENDMENTS

    Science.gov (United States)

    Sequential extraction procedures are used to determine the solid-phase association in which elements of interest exist in soil and sediment matrices. Foundational work by Tessier et al. (1) has found widespread acceptance and has worked tolerably as an operational definition for...

  1. Sequential Extraction and Measurement of 226Ra, 210Po, U and Th Isotopes in NORM Matrices

    International Nuclear Information System (INIS)

    Phosphate rock is a Naturally Occurring Radioactive Material containing high concentrations of radioisotopes from the 238U and/or 232Th natural decay series (up to 5·103 Bq·kg-1). This is the reason why several products and by-products of the phosphate industry (e.g. phosphoric acid, phosphate fertilizers, dicalcium phosphate and phosphogypsum) retain large fractions of those radionuclides. A vast amount of radiochemical methods have been proposed in the literature to extract, concentrate and analyze the content of these natural radionuclides in those samples. Unfortunately, many of these methods were originally developed for their application in environmental samples, thus their application to highly complex industrial matrices often decreases their chemical performance. Hence it is advisable to develop radiochemical ad hoc methods for those samples. In this work a sequential chemical extraction method for the determination of 226Ra, 210Po, U-isotopes and Th-isotopes in raw material, products and by-products from the phosphate industry is presented. In a first step, 226Ra is measured through Liquid Scintillation Counting following barium sulphate precipitation. Due to the difficulty of the matrices, recovery must be carefully controlled, thus 133Ba (T1/2 = 10.53 y) is used as internal tracer for 226Ra. Afterwards, 210Po, U and Th isotopes are determined using alpha spectrometry after a selective separation scheme which combines liquid-liquid extraction (TBP) and anion exchange techniques. The high concentration of uranium and thorium in those kinds of samples sometimes leads to crossover contamination after the radiochemical separation. For a successful uranium-thorium separation, after several anion exchange schemes trials, purification in hydrochloric acid media is suggested. (author)

  2. Iron Cycling in Marine Sediments - New Insights from Isotope Analysis on Sequentially Extracted Fe Fractions

    Science.gov (United States)

    Henkel, S.; Kasten, S.; Poulton, S.; Hartmann, J.; Staubwasser, M.

    2014-12-01

    Reactive Fe (oxyhydr)oxides preferentially undergo early diagenetic cycling and may cause a diffusive flux of dissolved Fe2+ from sediments towards the sediment-water interface. The partitioning of Fe in sediments has traditionally been studied by applying sequential extractions based on reductive dissolution of Fe minerals. We complemented the sequential leaching method by Poulton and Canfield [1] in order to be able to gain δ56Fe data for specific Fe fractions, as such data are potentially useful to study Fe cycling in marine environments. The specific mineral fractions are Fe-carbonates, ferrihydrite + lepidocrocite, goethite + hematite, and magnetite. Leaching was performed with acetic acid, hydroxylamine-HCl, Na-dithionite and oxalic acid. The processing of leachates for δ56Fe analysis involved boiling the samples in HCl/HNO3/H2O2, Fe precipitation and anion exchange column chromatography. The new method was applied to short sediment cores from the North Sea and a bay of King George Island (South Shetland Islands, Antarctica). Downcore mineral-specific variations in δ56Fe revealed differing contributions of Fe (oxyhydr)oxides to redox cycling. A slight decrease in easily reducible Fe oxides correlating with a slight increase in δ56Fe for this fraction with depth, which is in line with progessive dissimilatory iron reduction [2,3], is visible in the top 10 cm of the North Sea core, but not in the antarctic sediments. Less reactive (dithionite and oxalate leachable) fractions did not reveal isotopic trends. The acetic acid-soluble fraction displayed pronounced δ56Fe trends at both sites that cannot be explained by acid volatile sulfides that are also extracted by acetic acid [1]. We suggest that low δ56Fe values in this fraction relative to the pool of easily reducible Fe oxides result from adsorbed Fe(II) that was open to isotopic exchange with oxide surfaces, affirming the experimental results of Crosby el al. [2]. Hence, δ56Fe analyses on marine

  3. Study of Cu and Pb partitioning in mine tailings using the Tessier sequential extraction scheme

    Energy Technology Data Exchange (ETDEWEB)

    Andrei, Mariana Lucia, E-mail: marianaluciaandrei@yahoo.com [National Institute for Research and Development of Isotopic and Molecular Technologies, 65-103 Donath, 400293 Cluj-Napoca (Romania); Babes-Bolyai University, Environmental Science and Engineering Faculty, 30 Fantanele, 400294, Cluj-Napoca (Romania); Senila, Marin; Hoaghia, Maria Alexandra; Levei, Erika-Andrea [INCDO-INOE 2000, Research Institute for Analytical Instrumentation, 67 Donath, 400293, Cluj-Napoca (Romania); Borodi, Gheorghe [National Institute for Research and Development of Isotopic and Molecular Technologies, 65-103 Donath, 400293 Cluj-Napoca (Romania)

    2015-12-23

    The Cu and Pb partitioning in nonferrous mine tailings was investigated using the Tessier sequential extraction scheme. The contents of Cu and Pb found in the five operationally defined fractions were determined by inductively coupled plasma optical emission spectrometry. The results showed different partitioning patterns for Cu and Pb in the studied tailings. The total Cu and Pb contents were higher in tailings from Brazesti than in those from Saliste, while the Cu contents in the first two fractions considered as mobile were comparable and the content of mobile Pb was the highest in Brazesti tailings. In the tailings from Saliste about 30% of Cu and 3% of Pb were found in exchangeable fraction, while in those from Brazesti no metals were found in the exchangeable fraction, but the percent of Cu and Pb found in the bound to carbonate fraction were high (20% and 26%, respectively). The highest Pb content was found in the residual fraction in Saliste tailings and in bound to Fe and Mn oxides fraction in Brazesti tailings, while the highest Cu content was found in the fraction bound to organic matter in Saliste tailings and in the residual fraction in Brazesti tailings. In case of tailings of Brazesti medium environmental risk was found both for Pb and Cu, while in case of Saliste tailings low risk for Pb and high risk for Cu were found.

  4. Study of Cu and Pb partitioning in mine tailings using the Tessier sequential extraction scheme

    Science.gov (United States)

    Andrei, Mariana Lucia; Senila, Marin; Hoaghia, Maria Alexandra; Borodi, Gheorghe; Levei, Erika-Andrea

    2015-12-01

    The Cu and Pb partitioning in nonferrous mine tailings was investigated using the Tessier sequential extraction scheme. The contents of Cu and Pb found in the five operationally defined fractions were determined by inductively coupled plasma optical emission spectrometry. The results showed different partitioning patterns for Cu and Pb in the studied tailings. The total Cu and Pb contents were higher in tailings from Brazesti than in those from Saliste, while the Cu contents in the first two fractions considered as mobile were comparable and the content of mobile Pb was the highest in Brazesti tailings. In the tailings from Saliste about 30% of Cu and 3% of Pb were found in exchangeable fraction, while in those from Brazesti no metals were found in the exchangeable fraction, but the percent of Cu and Pb found in the bound to carbonate fraction were high (20% and 26%, respectively). The highest Pb content was found in the residual fraction in Saliste tailings and in bound to Fe and Mn oxides fraction in Brazesti tailings, while the highest Cu content was found in the fraction bound to organic matter in Saliste tailings and in the residual fraction in Brazesti tailings. In case of tailings of Brazesti medium environmental risk was found both for Pb and Cu, while in case of Saliste tailings low risk for Pb and high risk for Cu were found.

  5. Speciation of metals in uranium mill tailings using sequential extraction technique

    International Nuclear Information System (INIS)

    Mining sites contain residues from ore processing operations that are characterised by high concentrations of heavy metals. The form in which a metal exists strongly influences its mobility and thus, effects on the environment. Operational methods of speciation analysis, such as the use of sequential extraction procedures, are commonly applied. Investigation of the existing chemical forms and the concentrations of Mn, Pb, Cu, Fe, Zn and natural U in uranium mill tailings samples from Judged were carried out. The concentrations of Nat. U was found to vary from 81.05 to 120.21 μg g-1, and most common mode of occurrence of Nat. U in the tailings is in association with exchangeable species, Fe-Mn oxides and residual form. The dominant chemical form of Nat. U in TP-2 was exchangeable species. The concentration of Mn, Pb, Cu and Zn ranged from 326.5-1395.9, 28.6-41.4, 214.97-508 and 16.49-20.93 μg g-1, respectively. (author)

  6. Arsenic release from arsenopyrite weathering: Insights from sequential extraction and microscopic studies

    International Nuclear Information System (INIS)

    Highlights: ► We studied arsenopyrite weathering reactions in rocks and sediments at mine site. ► Arsenopyrite oxidizes to scorodite, which dissolves incongruently to Fe hydroxide. ► Weathering of arsenopyrite to Fe hydroxide releases As to water. ► Dominant As reservoir in sediment is Fe hydroxide. -- Abstract: At a former As mine site, arsenopyrite oxidation has resulted in formation of scorodite and As-bearing iron hydroxide, both in host rock and mine tailings. Electron microprobe analysis documents that arsenopyrite weathers along two pathways: one that involves formation of sulfur, and one that does not. In both pathways, arsenopyrite oxidizes to form scorodite, which dissolves incongruently to form As-bearing iron hydroxides. From a mass balance perspective, arsenopyrite oxidation to scorodite conserves As, but as scorodite dissolves incongruently to iron hydroxides, As is released to solution, resulting in elevated As concentrations in the headwater stream adjacent to the site. The As-bearing iron hydroxide is the dominant solid phase reservoir of As in mine tailings and stream sediment, as suggested by sequential extraction. This As-bearing iron hydroxide is stable under the aerobic and pH 4–6 conditions at the site; however, changes in biogeochemical conditions resulting from sediment burial or future remedial efforts, which could promote As release from this reservoir due to reductive dissolution, should be avoided

  7. Study of Cu and Pb partitioning in mine tailings using the Tessier sequential extraction scheme

    International Nuclear Information System (INIS)

    The Cu and Pb partitioning in nonferrous mine tailings was investigated using the Tessier sequential extraction scheme. The contents of Cu and Pb found in the five operationally defined fractions were determined by inductively coupled plasma optical emission spectrometry. The results showed different partitioning patterns for Cu and Pb in the studied tailings. The total Cu and Pb contents were higher in tailings from Brazesti than in those from Saliste, while the Cu contents in the first two fractions considered as mobile were comparable and the content of mobile Pb was the highest in Brazesti tailings. In the tailings from Saliste about 30% of Cu and 3% of Pb were found in exchangeable fraction, while in those from Brazesti no metals were found in the exchangeable fraction, but the percent of Cu and Pb found in the bound to carbonate fraction were high (20% and 26%, respectively). The highest Pb content was found in the residual fraction in Saliste tailings and in bound to Fe and Mn oxides fraction in Brazesti tailings, while the highest Cu content was found in the fraction bound to organic matter in Saliste tailings and in the residual fraction in Brazesti tailings. In case of tailings of Brazesti medium environmental risk was found both for Pb and Cu, while in case of Saliste tailings low risk for Pb and high risk for Cu were found

  8. Site energy distribution analysis of Cu (Ⅱ) adsorption on sediments and residues by sequential extraction method.

    Science.gov (United States)

    Jin, Qiang; Yang, Yan; Dong, Xianbin; Fang, Jimin

    2016-01-01

    Many models (e.g., Langmuir model, Freundlich model and surface complexation model) have been successfully used to explain the mechanism of metal ion adsorption on the pure mineral materials. These materials usually have a homogeneous surface where all sites have the same adsorption energies. However, it's hardly appropriate for such models to describe the adsorption on heterogeneous surfaces (e.g., sediment surface), site energy distribution analysis can be to. In the present study, the site energy distribution analysis was used to describe the surface properties and adsorption behavior of the non-residual and residual components extracted from the natural aquatic sediment samples. The residues were prepared "in-situ" by using the sequential extraction procedure. The present study is intended to investigate the roles of different components and the change of site energy distribution at different temperatures of the sediment samples in controlling Cu (Ⅱ) adsorption. The results of the site energy distribution analysis indicated firstly, that the sorption sites of iron/manganese hydrous oxides (IMHO) and organic matter (OM) have higher energy. Secondly, light fraction (LF) and carbonates have little influence on site energy distribution. Finally, there was increase in site energies with the increase of temperature. Specially, low temperature (5 °C) significantly influenced the site energies of IMHO and OM, and also had obvious effect on the energy distribution of the sediments after removing target components. The site energy distribution analysis proved to be a useful method for us to further understand the energetic characteristics of sediment in comparison with those previously obtained. PMID:26552542

  9. Behaviour of radiocesium in a turf weakly podzolic loam soil: critical evaluation of the sequential extraction results

    International Nuclear Information System (INIS)

    A sequential extraction procedure was applied to study the behavior of radiocesium in a turf weakly podzolic soil. The soil was sampled within the 30-km zone of the Chernobyl NPP (near Buryakivka village). No significant difference between exchangeable fractions for 1990-1995 was observed. However, there was some decreasing in non extractable residues. The redistribution of radiocesium's fraction in the soil during this procedure was studied; decreasing of first fractions was showed. Therefore, it is confirmed that the value of mobile forms of radiocesium obtained by the extraction procedure is underestimated. These results confirm the necessity of improving the methods of cesium's forms definition for soil

  10. Antibacterial activity of sequentially extracted organic solvent extracts of fruits,flowers and leaves of Lawsonia inermis L.from Jaffna

    Institute of Scientific and Technical Information of China (English)

    E; Christy; Jeyaseelan; S; Jenothiny; MK; Pathmanathan; JP; Jeyadevan

    2012-01-01

    Objective:To reveal the antibacterial activity of sequentially extracted different cold organic solvent extracts of fruits,flowers and leaves of Lawsonia inermis(L against)some pathogenic bacteria.Methods:Powders of fruits,flowers and leaves of L inermis were continuously extracted with dichloromethane(DCM),ethyl acetate and ethanol at ambient temperature.The dried extracts were prepared into different concentrations and tested for antibacterial activity by agar well diffusion method,and also the extracts were tested to detennine the available phytochemicals.Results:Except DCM extract of flower all other test extracts revealed inhibitory effect on all tested bacteria and their inhibitory effect differed significantly(P<0.05).The highest inhibitory effect was showed by ethyl acetate extract of flower against Staphylococcus aureus(S.aureus)and Pseudomonas aeruginosa(P.aeruginosa),and ethyl acetate extract of fruit on Escherichia coli(E.coli)and Bacillus subtilis(6.subtilis).The ethyl acetate and ethanol extracts of flower,fruit and leaf expressed inhibition even at 1 mg/100μl against all test bacteria.Among the tested phytochemicals flavonoids were detected in all test extracts except DCM extract of flower.Conclusions:The study demonstrated that the ethyl acetate and ethanol extracts of fruit and flower of L inermis are potentially better source of antibacterial agents compared to leaf extracts of respective solvents.

  11. Manganese and zinc in acidic agricultural soils from Central Spain: Distribution and phytoavailability prediction with chemical extraction tests

    OpenAIRE

    Rico Selas, M.Isabel; Álvarez Álvarez, José Manuel; López Valdivia, Luis Manuel; Novillo Carmona, Jesus; Obrador Pérez, Ana Francisca

    2009-01-01

    The extractability and distribution of manganese (Mn) and zinc (Zn) were evaluated in acidic agricultural soils from Central Spain. Both single (0.1 M hydrochloride [HCl] and 0.05 M ethylenediaminetetraacetate [EDTA]) and sequential extraction procedures (SEP) (modified Tessier procedure and Community Bureau of Reference [BCR] protocol) were applied to 29 representative soils that belong to the Alfisol, Inceptisol, and Entisol orders. Average relative Mn extractabilities with respect to the t...

  12. A study on the chemical and mineralogical characterization of MSWI fly ash using a sequential extraction procedure

    International Nuclear Information System (INIS)

    The presence of heavy metals in municipal solid waste incineration (MSWI) fly ash is of environmental concern due to their leaching potential in landfill environments. Sequential chemical extraction was performed on fly ash samples from a large-scale municipal solid waste incineration plant in East China. The transformation of the mineralogical species of fly ash during the sequential extraction was studied using X-ray fluorescence (XRF) and X-ray powder diffraction (XRD). The leaching behavior of heavy metals such as zinc, lead, cadmium and copper in MSWI fly ash was considered to have a dependency relationship with the components of calcium, such as aphthitalite, calcite, anhydrite and calcium aluminate or calcium aluminosilicate

  13. Sequential microwave-assisted extraction of oil from layer poultry feeds and GC-MS quantification of the fatty acids

    International Nuclear Information System (INIS)

    The present study reports the effect of sequential microwave-assisted extraction (SeMAE) on fatty acids composition (FAC) of layer poultry feed oil as compared to conventional Soxhlet extraction (SE) method. The FAC of extracted oil was determined by gas chromatography - mass spectrometry (GC-MS). There was no significant difference found in the amount of total extracted oil and FAC by SeMAE and SE. However, slightly greater content of trans fat in the samples revealed that SE lead to the formation of a little higher level of trans fat as compare to SeMAE. Therefore, the SeMAE could be used as a remarkable substitute to conventional SE for extraction of oil from the poultry feeds due to its faster speed, lesser solvent consumption, more environmental friendly. (author)

  14. BCR- ringtest of some individual chlorobiphenyls in cleaned eel-fat extracts (3/1984): On column injection : summary of results

    OpenAIRE

    Anonymous,

    1984-01-01

    In the meeting on PCB analyses organized in Ulm, Donau, West Germany, 11-13 April 1984, where the second ringtest 2/1983 (Report 84.27 d.d. 1984- 03- 26) was discussed, it was decided to organize a next ringtest. In this ringtest identification and quantification of some individual chlorobiphenyls should he carried out in the extracts of eel-fat samples (cleaned-up by saponification) using splitless injection (part 1) and/or on-column injection after optimization (part 2). For the optimizatio...

  15. Strontium distribution and origins in a natural clayey formation (Callovian-Oxfordian, Paris Basin, France): A new sequential extraction procedure

    OpenAIRE

    Lerouge, Catherine; Gaucher, Eric C.; Tournassat, Christophe; Négrel, Philippe; Crouzet, Catherine; Guerrot, Catherine; Gautier, Anne; Michel, Pascale; Vinsot, Agnès; Buschaert, Stéphane

    2010-01-01

    International audience Strontium is a good monitor of geochemical processes in natural clayey formations. In the Callovian-Oxfordian formation of Bure in France, strontium is sorbed on clay minerals and carried by carbonates, detrital minerals and accessory celestite. In order to determine the strontium distribution among these different phases, four-step sequential extractions (I. cobalt hexamine trichloride, 2. acetic acid, 3. EDTA and 4. tri-acid) were performed on samples from differen...

  16. Sequential extraction and availability of copper in Cu fungicide-amended vineyard soils from Southern Brazil

    International Nuclear Information System (INIS)

    The continuous use of cupric fungicides in vineyards, mainly copper sulfate (as a component of the bordeaux mixture), has increased Cu concentration in soils to levels near or even above the maximum established by the Commission of Soil Chemistry and Fertility of the States of Santa Catarina and Rio Grande do Sul, Brazil. Besides the total content, the fractions of the element along the soil profile must be known, because the total content of Cu in the soil is not sufficient to express its environmental impact. The objective of this study was to evaluate the variation of Cu contentes along the soil profile and its speciation and partitioning in 29 soil samples from vineyards in the state of Rio Grande do Sul, Brazil. Samples were collected in areas cropped with vineyards older than 15 years that had been frequently treated with the bordeaux mixture. These samples were from Nitosols, Acrisols, Cambisols and Leptosols and were analysed by sequential extractions and several chemical extractors. Soils had diverse chemical and physical attributes: clay content in the plowed layer (0-0.2 m) ranged from 120 to 610 g kg-1, pH ranged from 5.3 to 7.3 and organic carbon contents varied from 2.9 to 51 g dm-3. Among the 29 samples, 16 had the total Cu above the maximum limit allowed by the European Community regulations (140 mg kg-1). The average amount of Cu bonded to the oxide fraction accounted for 49.5% of the total Cu.

  17. Development of an automated sequential injection on-line solvent extraction-back extraction procedure as demonstrated for the determination of cadmium with detection by electrothermal atomic absorption spectrometry

    DEFF Research Database (Denmark)

    Wang, Jianhua; Hansen, Elo Harald

    2002-01-01

    An automated sequential injection (SI) on-line solvent extraction-back extraction separation/preconcentration procedure is described. Demonstrated for the assay of cadmium by electrothermal atomic absorption spectrometry (ETAAS), the analyte is initially complexed with ammonium...

  18. AP24534, a Pan-BCR-ABL Inhibitor for Chronic Myeloid Leukemia, Potently Inhibits the T315I Mutant and Overcomes Mutation-Based Resistance

    Energy Technology Data Exchange (ETDEWEB)

    O’Hare, Thomas; Shakespeare, William C.; Zhu, Xiaotian; Eide, Christopher A.; Rivera, Victor M.; Wang, Frank; Adrian, Lauren T.; Zhou, Tianjun; Huang, Wei-Sheng; Xu, Qihong; Metcalf, III, Chester A.; Tyner, Jeffrey W.; Loriaux, Marc M.; Corbin, Amie S.; Wardwell, Scott; Ning, Yaoyu; Keats, Jeffrey A.; Wang, Yihan; Sundaramoorthi, Raji; Thomas, Mathew; Zhou, Dong; Snodgrass, Joseph; Commodore, Lois; Sawyer, Tomi K.; Dalgarno, David C.; Deininger, Michael W.N.; Druker, Brian J.; Clackson, Tim; (OHSU- Cancer Instit.); (ARIAD)

    2010-09-07

    Inhibition of BCR-ABL by imatinib induces durable responses in many patients with chronic myeloid leukemia (CML), but resistance attributable to kinase domain mutations can lead to relapse and a switch to second-line therapy with nilotinib or dasatinib. Despite three approved therapeutic options, the cross-resistant BCR-ABL{sup T315I} mutation and compound mutants selected on sequential inhibitor therapy remain major clinical challenges. We report design and preclinical evaluation of AP24534, a potent, orally available multitargeted kinase inhibitor active against T315I and other BCR-ABL mutants. AP24534 inhibited all tested BCR-ABL mutants in cellular and biochemical assays, suppressed BCR-ABL{sup T315I}-driven tumor growth in mice, and completely abrogated resistance in cell-based mutagenesis screens. Our work supports clinical evaluation of AP24534 as a pan-BCR-ABL inhibitor for treatment of CML.

  19. A Green Sequential Injection Spectrophotometric Approach Using Natural Reagent Extracts from Heartwood of Ceasalpinia sappan Linn. for Determination of Aluminium.

    Science.gov (United States)

    Siriangkhawut, Watsaka; Khanhuathon, Yaowalak; Chantiratikul, Piyanete; Ponhong, Kraingkrai; Grudpan, Kate

    2016-01-01

    A cost-effective and environmentally friendly approach using a simple sequential injection spectrophotometric system with a non-synthetic reagent from plant extracts was proposed for a green analytical-chemistry methodology. The crude aqueous extracts from heartwood of Ceasalpinia sappan Linn. in acetate buffer pH 5.5 were utilized as an alternative natural reagent for the quantification of aluminium. The extracts contained homoisoflavonoid compounds, brazilin, and brazilein, which reacted with Al(3+) to form reddish complexes with the maximum absorption wavelength at 530 nm. The optimum conditions for the sequential injection parameters, such as sequential profile, sample and reagent volumes, and the pH effect, were investigated. Under the optimum conditions, a linear calibration graph in the range of 0.075 - 1.0 mg L(-1) Al(3+) was obtained with limits of detection and quantification of 0.021 and 0.072 mg L(-1) Al(3+), respectively. Relative standard deviations of 3.2 and 2.4% for 0.1 and 0.25 mg L(-1) Al(3+) (n = 11), respectively, and sampling rate of 128 injections h(-1) were achieved. The developed system was successfully applied to pharmaceutical preparations, water, and beverage samples. The results agreed well with those obtained from the ICP-AES method. Good recoveries between 87 and 104% were obtained. PMID:26960614

  20. Volatile profile characterisation of Chilean sparkling wines produced by traditional and Charmat methods via sequential stir bar sorptive extraction.

    Science.gov (United States)

    Ubeda, C; Callejón, R M; Troncoso, A M; Peña-Neira, A; Morales, M L

    2016-09-15

    The volatile compositions of Charmat and traditional Chilean sparkling wines were studied for the first time. For this purpose, EG-Silicone and PDMS polymeric phases were compared and, afterwards, the most adequate was selected. The best extraction method turned out to be a sequential extraction in the headspace and by immersion using two PDMS twisters. A total of 130 compounds were determined. In traditional Chilean sparkling wines, ethyl esters were significantly higher, while acetic esters and ketones were predominant in the Charmat wines. PCA and LDA confirmed the differences in the volatile profiles between the production methods (traditional vs. Charmat). PMID:27080904

  1. Dynamic fractionation of trace metals in soil and sediment samples using rotating coiled column extraction and sequential injection microcolumn extraction: a comparative study.

    Science.gov (United States)

    Rosende, Maria; Savonina, Elena Yu; Fedotov, Petr S; Miró, Manuel; Cerdà, Víctor; Wennrich, Rainer

    2009-09-15

    Dynamic fractionation has been recognized as an appealing alternative to conventional equilibrium-based sequential extraction procedures (SEPs) for partitioning of trace elements (TE) in environmental solid samples. This paper reports the first attempt for harmonization of flow-through dynamic fractionation using two novel methods, the so-called sequential injection microcolumn (SIMC) extraction and rotating coiled column (RCC) extraction. In SIMC extraction, a column packed with the solid sample is clustered in a sequential injection system, while in RCC, the particulate matter is retained under the action of centrifugal forces. In both methods, the leachants are continuously pumped through the solid substrates by the use of either peristaltic or syringe pumps. A five-step SEP was selected for partitioning of Cu, Pb and Zn in water soluble/exchangeable, acid-soluble, easily reducible, easily oxidizable and moderately reducible fractions from 0.2 to 0.5 g samples at an extractant flow rate of 1.0 mL min(-1) prior to leachate analysis by inductively coupled plasma-atomic emission spectrometry. Similarities and discrepancies between both dynamic approaches were ascertained by fractionation of TE in certified reference materials, namely, SRM 2711 Montana Soil and GBW 07311 sediment, and two real soil samples as well. Notwithstanding the different extraction conditions set by both methods, similar trends of metal distribution were in generally found. The most critical parameters for reliable assessment of mobilizable pools of TE in worse-case scenarios are the size-distribution of sample particles, the density of particles, the content of organic matter and the concentration of major elements. For reference materials and a soil rich in organic matter, the extraction in RCC results in slightly higher recoveries of environmentally relevant fractions of TE, whereas SIMC leaching is more effective for calcareous soils. PMID:19615513

  2. On-line dynamic fractionation and automatic determination of inorganic phosphorous in environmental solid substrates exploiting sequential injection microcolumn extraction and flow injection analysi

    DEFF Research Database (Denmark)

    Buanuam, Janya; Miró, Manuel; Hansen, Elo Harald;

    2006-01-01

    Sequential injection microcolumn extraction (SI-MCE) based on the implementation of a soil containing microcartridge as external reactor in a sequential injection network is, for the first time, proposed for dynamic fractionation of macronutrients in environmental solids, as exemplified by the pa...... electrothermal atomic absorption spectrometry....

  3. Research of Sequential Extraction Procedure for Heavy Metals in Sediments from Mariculture Area%连续萃取法研究海湾养殖区沉积物中重金属形态

    Institute of Scientific and Technical Information of China (English)

    郭鹏然; 牟德海; 王畅; 仇荣亮; 杜虹

    2009-01-01

    A sequential extraction procedure has been proposed for the evaluation of the speciation of heavy metals including Cd,Cu,Pb and Zn in sediments from mariculture area,and the speciation of heavy metals was separated and defined as acid soluble fraction,reducible fraction,fraction bound organic matter,fraction bound sulfides and residual fraction. Matrix effects of high salinity on the determination of heavy metals in sediments were eliminated by matrix matching and internal standard methods when inductively couple plasma optical emission spectroscopy (ICP-OES) and mass spectroscopy (ICP-MS) were used,respectively. The results showed that the measured values of marine sediment reference materials were consistent with the standard values when the digestion solutions were determined after dilution. The extraction results of the prepositional extraction procedure and European Community Bureau of Reference Program (BCR) procedure were compared and the selectivity of extractants was investigated. The preliminary studies indicated that this sequential extraction procedure was applicable for evaluating the speciation of heavy metals in sediment with organic substances pollution and eutrophication,especially for fraction bound organic matter and fraction bound sulfides.%以连续萃取法研究海湾养殖区沉积物中重金属(Cd,Cu,Pb,Zn)的形态,将重金属分离为酸溶态、还原态、有机质结合态、硫化物结合态和残渣态.分别采用基体匹配法和内标法消除高盐基体对电感耦合等离子体光谱法(ICP-OES)和质谱法(ICP-MS)分析结果的影响.对海洋沉积物标准物质分析结果表明,样品稀释后测定值与标准值一致.比较了本连续萃取法和BCR法对沉积物样品中重金属形态的提取结果,并考察了萃取剂的选择性.实验表明,本方法可用于有机质污染和富营养化环境沉积物中重金属形态分析,特别是有机质结合态和硫化物结合态的分析.

  4. Sequential separation of lanthanides, thorium and uranium using novel solid phase extraction method from high acidic nuclear wastes.

    Science.gov (United States)

    Kesava Raju, Ch Siva; Subramanian, M S

    2007-06-25

    A novel grafted polymer for selective extraction and sequential separation of lanthanides, thorium and uranium from high acidic wastes has been developed by grafting Merrifield chloromethylated (MCM) resin with octyl(phenyl)-N,N-diisobutylcarbamoyl-methylphosphine oxide (CMPO) (MCM-CMPO). The grafting process is well characterized using FT-IR spectroscopy, (31)P and (13)C CPMAS (cross-polarized magic angle spin) NMR spectroscopy and CHNPS elemental analysis. The influence of various physico-chemical parameters during metal ion extraction by the resin phase are studied and optimized by both static and dynamic methods. The resin shows very high sorption capacity values of 0.960mmolg(-1) for U(VI), 0.984mmolg(-1) for Th(IV), 0.488mmolg(-1) for La(III) and 0.502mmolg(-1) for Nd(III) under optimum HNO(3) medium, respectively. The grafted polymer shows faster rate exchange kinetics (extraction) and greater preconcentration ability, with reusability exceeding 20 cycles. During desorption process, sequential separation of the analytes is possible with varying eluting agents. The developed grafted resin has been successfully applied in extracting Th(IV) from high matrix monazite sand, U(VI) and Th(IV) from simulated nuclear spent fuel mixtures. All the analytical data is based on triplicate analysis and measurements are within 3.5% rsd reflecting the reproducibility and reliability of the developed method. PMID:17178189

  5. Total and extractable formsof Cu, Zn, Ni, Cr, Pb and Fe in vineyard soil (Valandovo Valley, Macedonia) determined by a sequential extraction procedure

    OpenAIRE

    Karakaseva, Elizabeta; Boev, Blazo; Zajkova-Paneva, Vesna

    2012-01-01

    The total and extractable forms of Cu, Zn, Pb, Ni, Cr, and Fe in vineyard soils from the valley of Valandovo were analyzed in order to understand the existence of metals in soils and their potential availability to the flora and fauna. The content of metals was determined by ICP-EAS analysis, while metal binding was defined with a sequential extraction procedure. The total content of Cu, Zn, Pb, Ni, Fe and Cr, in almost all soil samples, did not exceed the maximum permissible cont...

  6. Sequential Application of Soil Vapor Extraction and Bioremediation Processes for the Remediation of Ethylbenzene-Contaminated Soils

    DEFF Research Database (Denmark)

    Soares, António Carlos Alves; Pinho, Maria Teresa; Albergaria, José Tomás; Domingues, Valentina; Alvim-Ferraz, Maria da Conceição M; Marco, Paolo De; Delerue-Matos, Cristina

    2012-01-01

    Soil vapor extraction (SVE) is an efficient, well-known and widely applied soil remediation technology. However, under certain conditions it cannot achieve the defined cleanup goals, requiring further treatment, for example, through bioremediation (BR). The sequential application of these...... technologies is presented as a valid option but is not yet entirely studied. This work presents the study of the remediation of ethylbenzene (EB)-contaminated soils, with different soil water and natural organic matter (NOMC) contents, using sequential SVE and BR. The obtained results allow the conclusion that......: (1) SVE was sufficient to reach the cleanup goals in 63% of the experiments (all the soils with NOMC below 4%), (2) higher NOMCs led to longer SVE remediation times, (3) BR showed to be a possible and cost-effective option when EB concentrations were lower than 335 mg kgsoil −1, and (4...

  7. Determination of heavy metals in paddy soils (Kočani Field, Macedonia) by a sequential extraction procedure

    OpenAIRE

    Rogan, Nastja; Dolenec, Tadej; Serafimovski, Todor; Tasev, Goran; Dolenec, Matej

    2008-01-01

    In this study we examine the distribution of heavy metals (As, Cd, Cu, Pb and Zn) in paddy soil samples from Kočani Field (Macedonia) by ICP-EAS and sequential extraction procedure. Very high concentrations of As (42 mg/kg), Cd (5.6 mg/kg), Cu (99 mg/kg), Pb (892 mg/kg) and Zn (1134 mg/kg) were found in the paddy soil sample from location VII-2 in the western part of Kočani Field, close to the Zletovska River, which drains the untreated effuents of the Pb-Zn mine in Zletovo and is used for th...

  8. A sequential extraction procedure to determine Ra and U isotopes by alpha-particle spectrometry in selective leachates

    International Nuclear Information System (INIS)

    A radiochemical sequential extraction procedure has been developed in our laboratory to determine 226Ra and 234,238U by alpha spectrometry in environmental samples. This method has been validated for both radionuclides by comparing in selected samples the values obtained through its application with the results obtained by applying alternative procedures. Recoveries obtained, counting periods applied and background levels found in the alpha spectra give suitable detection limits to allow the Ra and U determination in operational forms defined in riverbed contaminated sediments. Results obtained in these speciation studies show that 226Ra and 234,238U contamination tend to be associated to precipitated forms of the sediments. (author)

  9. Assessment of electrokinetic removal of heavy metals from soils by sequential extraction analysis.

    Science.gov (United States)

    Reddy, K R; Xu, C Y; Chinthamreddy, S

    2001-06-29

    Electrokinetic remediation of metal-contaminated soils is strongly affected by soil-type and chemical species of contaminants. This paper investigates the speciation and extent of migration of heavy metals in soils during electrokinetic remediation. Laboratory electrokinetic experiments were conducted using two diverse soils, kaolin and glacial till, contaminated with chromium as either Cr(III) or Cr(VI). Initial total chromium concentrations were maintained at 1000mg/kg. In addition, Ni(II) and Cd(II) were used in concentrations of 500 and 250mg/kg, respectively. The contaminated soils were subjected to a voltage gradient of 1 VDC/cm for over 200h. The extent of migration of contaminants after the electric potential application was determined. Sequential extractions were performed on the contaminated soils before and after electrokinetic treatment to provide an understanding of the distribution of the contaminants in the soils. The initial speciation of contaminants was found to depend on the soil composition as well as the type and amounts of different contaminants present. When the initial form of chromium was Cr(III), exchangeable and soluble fractions of Cr, Ni, and Cd ranged from 10 to 65% in kaolin; however, these fractions ranged from 0 to 4% in glacial till. When the initial form of chromium was Cr(VI), the exchangeable and soluble fractions of Cr, Ni and Cd ranged from 66 to 80% in kaolin. In glacial till, however, the exchangeable and soluble fraction for Cr was 38% and Ni and Cd fractions were 2 and 10%, respectively. The remainder of the contaminants existed as the complex and precipitate fractions. During electrokinetic remediation, Cr(VI) migrated towards the anode, whereas Cr(III), Ni(II) and Cd(II) migrated towards the cathode. The speciation of contaminants after electrokinetic treatment showed that significant change in exchangeable and soluble fractions occurred. In kaolin, exchangeable and soluble Cr(III), Ni(II), and Cd(II) decreased near the

  10. Validation of a single-extraction procedure for sequential analysis of vitamin E, cholesterol, fatty acids, and total fat in seafood

    OpenAIRE

    Cruz, Rebeca; Casal, Susana; Mendes, Eulália; Costa, Ana; Santos, Catarina; Morais, Simone

    2013-01-01

    Food lipid major components are usually analyzed by individual methodologies using diverse extractive procedures for each class. A simple and fast extractive procedure was devised for the sequential analysis of vitamin E, cholesterol, fatty acids, and total fat estimation in seafood, reducing analyses time and organic solvent consumption. Several liquid/liquid-based extractive methodologies using chlorinated and non-chlorinated organic solvents were tested. The extract...

  11. Instrumented testing of BCR Specimens

    International Nuclear Information System (INIS)

    Two times two reference batches of BCR material with nominal energies of 80J and 160J were impact tested on an instrumented machine. A good agreement was found between the friction-corrected dial energy and the integrated energy. Systematic differences have been detected between the two 80J batches: these differences do not occur in the typical force values and are a consequence of a post-maximum event. A small calibration difference exists for the 80J batches: this seems a consequence of the higher impact forces involved and suggests the influence of dynamic effects on the calibration (static, in-situ). The next step is to test similar batches on a non-instrumented impact tester to detect an eventual influence of the physical presence of instrumentation on the impact pot. It is expected that this effect will be minor

  12. A sequential extraction procedure for determination of uranium, thorium, radium, lead and polonium radionuclides by alpha spectrometry in environmental samples

    International Nuclear Information System (INIS)

    A sequential extraction technique was developed allowing the extraction and purification of uranium, thorium, radium, lead and polonium radionuclides from the same sample. Environmental materials such as water, soil, biological materials, can be analyzed for those radionuclides without matrix interferences in the quality of radioelement purification and in the radiochemical yield. The use of isotopic tracers (232U, 229Th, 224Ra, 209Po and stable lead carrier) added to the sample at the beginning of the chemical procedure enables an accurate control of the radiochemical yield for each radioelement. The ion extraction procedure, applied after either complete dissolution of the solid sample with mineral acids or dissolution of MnO2 precipitate for aqueous samples, includes the use of commercially available columns from Eichrom and laboratory prepared anionic and cationic columns, in a total of three chromatography columns. All radioelements are purified and electroplated on stainless steel discs except for polonium which is spontaneously plated on a silver disc. The discs are measured using high resolution silicon surface barrier detectors. 210Pb, a beta emitter, can be measured either through the beta emission of 210Bi, or stored for a few months and determined by alpha spectrometry through the in-growth of 210Po. This sequential extraction chromatography technique was tested and validated by analysis of certified reference materials from IAEA (soil, marine sediment, and fish). Reproducibility was tested through repeated analysis of the same homogeneous material (water sample). Performance, when applied to samples with different matrix, was tested analyzing cabbage, potatoes, fish filet, meat, water, urine, soils and sediments with high yield of recovery and complete separation of radioelements. Precision was tested also through participation in analytical inter laboratory world wide comparisons analysing blind samples (round robin tests) organized by the IAEA and

  13. Sequential automated fusion/extraction chromatography methodology for the dissolution of uranium in environmental samples for mass spectrometric determination

    International Nuclear Information System (INIS)

    An improved methodology has been developed, based on dissolution by automated fusion followed by extraction chromatography for the detection and quantification of uranium in environmental matrices by mass spectrometry. A rapid fusion protocol (2/LiBr melts were used. The use of a M4 fusion unit also improved repeatability in sample preparation over muffle furnace fusion. Instrumental issues originating from the presence of high salt concentrations in the digestate after lithium metaborate fusion was also mitigated using an extraction chromatography (EXC) protocol aimed at removing lithium and interfering matrix constituants prior to the elution of uranium. The sequential methodology, which can be performed simultaneously on three samples, requires less than 20 min per sample for fusion and separation. It was successfully coupled to inductively coupled plasma mass spectrometry (ICP-MS) achieving detection limits below 100 pg kg-1 for 5-300 mg of sample.

  14. Assessment of heavy metal pollution in sediments from Xiangjiang River (China) using sequential extraction and lead isotope analysis

    Institute of Scientific and Technical Information of China (English)

    蒋博峰; 孙卫玲

    2014-01-01

    The heavy metal (such as Cr, Ni, Cu, Cd, Pb, and Zn) concentration, speciation, and pollution source in 43 sediment samples from the Xiangjiang River were investigated using sequential extraction combined with Pb isotope analysis. Cu, Cd, Pb, and Zn concentrations are higher than their background values, while Cr and Ni concentrations are close to those. Sequential extraction demonstrates that heavy metals have different fractions, showing different bioavailabilities. Thew(206Pb)/w(207Pb) ratio increases with decreasing bioavailability in the order of exchangeable

  15. Sequential chemical extraction of heavy metals in a study of the chemical alteration of mine tailings at Ticapampa (Huaraz, Peru)

    International Nuclear Information System (INIS)

    The upper reaches of the Rio Santa (Huaraz, Peru) are highly affected by the mining activities of generally small and very small mining companies located in two specific areas, Cordillera Blanca, and Cordillera Negra, with the largest mining claims located in the districts of Recuay and Ticapampa. To assess the mobility and bioavailability of heavy metals in the abandoned tailings pond belonging to the Alianza mining company in the district of Ticapampa, and to identify the fractions to which they are associated we applied a sequential chemical extraction. The results were compared with studies into their mineralogical characterization, a quantitative chemical analysis and a determination of potential acidity and potential neutralization by the ABA (acid-base accounting) method applied to samples of tailings. The sequential extraction procedure confirmed the mode of general alteration observed in the area through mineralogical studies: a relatively easy mobility of Pb, and Cd, and considerable immobility with regard to Ag, Cr and Co, as well as an intermediate mobility of Cu, Zn, and As. Significant cadmium and lead contents found in the most mobile fractions of the tailings may represent an environmental threat, bearing in mind the toxic nature of these elements. Despite the low mobility of arsenic, the total quantities of this element are so high that the waters of the Rio Santa are being affected. (Author) 22 refs.

  16. Distribution of Zinc and Cadmium in Tissues of Giant Reed (Arundo Donax L.: Sequential Extraction - Radiometric Study

    Directory of Open Access Journals (Sweden)

    Richveisová Barbora Micháleková

    2014-06-01

    Full Text Available Heavy metals are taken up by the vascular plant root system from water solutions in cationic forms. Subsequently, during both short and long distance transport to other plant tissues, cation forms are incorporated to many bioorganic compounds differing in stability, ionic character and physico-chemical properties such as solubility in lipid structures and mobility across cell membrane systems. Many sequential and single step extraction methods have been elaborated for characterization of the role of individual components of plant cells components in transport and detoxication of heavy metals. In our study, dry biomass of giant reed (Arundo donax L. grown in hydroponic media spiked with 65ZnCl2 and 109CdCl2 was treated with dithizone solutions as complexing ligand in order to convert free Zn2+ and Cd2+ ions to corresponding dithizonates. Treatment with dithizone showed that up to 67 % of the total plant Cd and 56 % of the total plant Zn were transformed to dithizonate complexes extracted with chloroform. Extraction of biomass with Folch reagent showed that up to 48 % of the total root cadmium and up to 18 % of the total shoot cadmium is bound in lipid fraction. Zinc was not found in lipid fraction of root and shoot. Derivatization of the dried root and shoot lipid fraction by dithizone showed that two third of Cd in root and practically all Cd in shoot lipid fraction could be transformed to Cd-dithizonate. Methods of biomass treating with complexing ligands and a method of sequential extraction procedures with non-polar organic solvents and radiotracer methodology seem to be useful methods for the study of metal speciation and distribution in vascular plants

  17. Sequential extraction procedure for determination of uranium, thorium, radium, lead and polonium radionuclides by alpha spectrometry in environmental samples

    International Nuclear Information System (INIS)

    A sequential extraction technique was developed and tested for common naturally-occurring radionuclides. This technique allows the extraction and purification of uranium, thorium, radium, lead, and polonium radionuclides from the same sample. Environmental materials such as water, soil, and biological samples can be analyzed for those radionuclides without matrix interferences in the quality of radioelement purification and in the radiochemical yield. The use of isotopic tracers (232U, 229Th, 224Ra, 209Po, and stable lead carrier) added to the sample in the beginning of the chemical procedure, enables an accurate control of the radiochemical yield for each radioelement. The ion extraction procedure, applied after either complete dissolution of the solid sample with mineral acids or co-precipitation of dissolved radionuclide with MnO2 for aqueous samples, includes the use of commercially available pre-packed columns from Eichrom(r) and ion exchange columns packed with Bio-Rad resins, in altogether three chromatography columns. All radioactive elements but one are purified and electroplated on stainless steel discs. Polonium is spontaneously plated on a silver disc. The discs are measured using high resolution silicon surface barrier detectors. 210Pb, a beta emitter, can be measured either through the beta emission of 210Bi, or stored for a few months and determined by alpha spectrometry through the in-growth of 210Po. This sequential extraction chromatography technique was tested and validated with the analysis of certified reference materials from the IAEA. Reproducibility was tested through repeated analysis of the same homogeneous material (water sample). (author)

  18. Sequential Data Mining for Information Extraction from Texts Fouille de données séquentielles pour l’extraction d’information dans les textes

    Directory of Open Access Journals (Sweden)

    Thierry Charnois

    2010-09-01

    Full Text Available This paper shows the benefit of using data mining methods for Biological Natural Language Processing. A method for discovering linguistic patterns based on a recursive sequential pattern mining is proposed. It does not require a sentence parsing nor other resource except a training data set. It produces understandable results and we show its interest in the extraction of relations between named entities. For the named entities recognition problem, we propose a method based on a new kind of patterns taking account the sequence and its context.

  19. Development of a sequential extraction method for different forms of phosphorus in Bovilla lake sediments

    OpenAIRE

    Loreta Vallja; , Sonila Duka; Alqi Cullaj

    2013-01-01

    Extractable forms of phosphorus are studied more widely than the extractable forms of most other elements. The main reason for this is because P is the key element in aquatic chemistry of lakes being a limiting nutrient in the growth of algae under many conditions. Exchange with bottom sediments place an important role in making P available for algae and contributes, therefore to eutrophication. Many extraction schemes have been developed to determine different forms of P in sediments. The ob...

  20. Sequential extraction procedures to ascertain the role of organic matter in the fate of iodine in soils

    International Nuclear Information System (INIS)

    In the assessment of the radiological impact on man of radioactive substances the fate of the long-lived 129I in soils is of special interest. In order to predict the behaviour of iodine in the environment the knowledge of soil parameters which are responsible for its sorption is necessary. Sequential extraction techniques were performed to investigate the degree of binding of iodine with soil components and more specifically with the different constituents of soil organic matter (humic acid, fulvic acid, humin) which are liable to change with time. A speciation scheme was especially developed to study the role of organic matter in iodine retention and complexation. In the first steps, several mineral fractions of iodine were extracted: water soluble (H2O), exchangeable (1M MgCl2 ), carbonate bound (0.01N HCl), bound to Fe-Mn oxides (0.5 M NH4OH,HCl adjusted to pH=2 with HNO3). After these preliminary steps, the extraction of organic matter was carried out with neutral pyrophosphate (Na2H2P2O7/ K4P2O7 1/1 0.1M pH=7) to determine iodine bound to organo-mineral complexes and sodium hydroxide (0.5 M NaOH) to quantify iodine bound to humic substances. For these extracts, the distribution of iodine between humic and fulvic acids was studied. Iodine bound to residual and insoluble organic matter (humin) was extracted with H2O2 30% adjusted to pH=2 with HNO3. In the last step, iodine bound to the residual soil was extracted by wet digestion (H2SO4). In this scheme, all the traditional organic reagents (acetate, acetic acid,..) were removed and replaced by mineral reagents to allow the monitoring of organic carbon in the soil extracts. (author)

  1. Sequential protein extraction as an efficient method for improved proteome coverage in larvae of Atlantic salmon (Salmo salar).

    Science.gov (United States)

    Nuez-Ortín, Waldo G; Carter, Chris G; Nichols, Peter D; Wilson, Richard

    2016-07-01

    Understanding diet- and environmentally induced physiological changes in fish larvae is a major goal for the aquaculture industry. Proteomic analysis of whole fish larvae comprising multiple tissues offers considerable potential but is challenging due to the very large dynamic range of protein abundance. To extend the coverage of the larval phase of the Atlantic salmon (Salmo salar) proteome, we applied a two-step sequential extraction (SE) method, based on differential protein solubility, using a nondenaturing buffer containing 150 mM NaCl followed by a denaturing buffer containing 7 M urea and 2 M thiourea. Extracts prepared using SE and one-step direct extraction were characterized via label-free shotgun proteomics using nanoLC-MS/MS (LTQ-Orbitrap). SE partitioned the proteins into two fractions of approximately equal amounts, but with very distinct protein composition, leading to identification of ∼40% more proteins than direct extraction. This fractionation strategy enabled the most detailed characterization of the salmon larval proteome to date and provides a platform for greater understanding of physiological changes in whole fish larvae. The MS data are available via the ProteomeXchange Consortium PRIDE partner repository, dataset PXD003366. PMID:27272914

  2. Mechanism of ofloxacin fluorescence quenching and its interaction with sequentially extracted dissolved organic matter from lake sediment of Dianchi, China.

    Science.gov (United States)

    Lei, Kun; Han, Xuejiao; Fu, Guo; Zhao, Jian; Yang, Libiao

    2014-12-01

    The wide use and occurrence of antibiotics in water environments have caused wide concerns. Ofloxacin (OFL) was selected as a target antibiotic, and the interaction between OFL and sequential extracted dissolved organic matter (DOM) from the sediment of Dianchi, a hypertrophic lake in Southwest China, was explored using fluorescence quenching technology. The method of fuorescence quenching was used to characterize the interaction between OFL and sequentially extracted DOM. The result indicated that static and dynamic quenching both existed in the interaction. The interaction in the background water (0.01 mol/L NaCl and 200 mg/L NaN3) became increasingly weak with the further extraction of DOM. A low non-linear factor N value (0.53∼0.63) of Freundlich model was observed, indicating a non-linear interaction between OFL and DOM. Elemental characterization and infrared spectrum analysis showed an enhanced OFL-DOM binding with the decrease in humic acid (HA) polarity. The effect of ion strength was tested in the OFL-DOM interaction to show the impact of usually existing metal ions in water environment on the OFL behavior. The result showed that K(+) had little influence, but Cu(2+) had a significant promotion (p < 0.05) in the OFL-DOM interaction in background water, indicating that divalent metal ions, which have the bridge bond or complexation capacity, are more active in the OFL-DOM interaction than monovalent ions, with no bridge bond or complexation capacity. This work would be useful in the fate and risk assessment of antibiotics in water environments. PMID:25223534

  3. INVESTIGATION OF ARSENIC SPECIATION ON DRINKING WATER TREATMENT MEDIA UTILIZING AUTOMATED SEQUENTIAL CONTINUOUS FLOW EXTRACTION WITH IC-ICP-MS DETECTION

    Science.gov (United States)

    Three treatment media, used for the removal of arsenic from drinking water, were sequentially extracted using 10mM MgCl2 (pH 8), 10mM NaH2PO4 (pH 7) followed by 10mM (NH4)2C2O4 (pH 3). The media were extracted using an on-line automated continuous extraction system which allowed...

  4. Phosphoprotein analysis of sequential extracts of human dentin and the determination of the subsequent remineralization potential of these dentin matrices.

    Science.gov (United States)

    Clarkson, B H; Chang, S R; Holland, G R

    1998-01-01

    Phosphoprotein appears to play an important role in the mineralization of dentin during tooth development and remineralization after demineralization by dental caries. To better understand this role, we describe the extraction and characterization of phosphoprotein from immature, human root apex dentin during and after EDTA demineralization. The extraction procedure included dissociation of the demineralized dentin matrix by guanidine hydrochloride (Gdn.HCl) followed by subsequent digestion with cyanogen bromide (CNBr) and collagenase. Characterization of these extracts included 'Stains-All' staining of SDS polyacrylamide gels (SDS-PAGE) and amino acid, protein and phosphorus analyses. The ability of these matrices to remineralize was determined by TEM and measuring calcium levels in the remineralized tissue by atomic absorption spectroscopy. The staining of SDS-PAGE gels and amino acid analysis showed that an intact phosphophoryn was extracted from the dentin of the immature apices during EDTA demineralization and that it had an apparent Mr approximately 140,000. In the subsequent extracts and digests, the phosphoprotein has a range of molecular weights, some of which may have been degraded products of the intact phosphoprotein. A greater quantity of phosphoprotein was found in the EDTA-demineralized dentin matrices than in dentin after Gdn.HCl, CNBr and collagenase digests. These EDTA-demineralized matrices also remineralized to a greater extent than those dissociated with Gdn.HCl. The differences in both the quantity and the quality, as defined by the amino acid residue profile, of the phosphoprotein in the sequential extracts of the root apex dentin may be important in affecting the ability of this tissue to remineralize. PMID:9701661

  5. Sequential Clustering based Facial Feature Extraction Method for Automatic Creation of Facial Models from Orthogonal Views

    CERN Document Server

    Ghahari, Alireza

    2009-01-01

    Multiview 3D face modeling has attracted increasing attention recently and has become one of the potential avenues in future video systems. We aim to make more reliable and robust automatic feature extraction and natural 3D feature construction from 2D features detected on a pair of frontal and profile view face images. We propose several heuristic algorithms to minimize possible errors introduced by prevalent nonperfect orthogonal condition and noncoherent luminance. In our approach, we first extract the 2D features that are visible to both cameras in both views. Then, we estimate the coordinates of the features in the hidden profile view based on the visible features extracted in the two orthogonal views. Finally, based on the coordinates of the extracted features, we deform a 3D generic model to perform the desired 3D clone modeling. Present study proves the scope of resulted facial models for practical applications like face recognition and facial animation.

  6. Uranium distribution in mineral species of rocks by a sequential extraction procedure

    International Nuclear Information System (INIS)

    This work has the objective of measuring uranium series nuclides concentrations and calculating disequilibria in co-existing mineral species in order to clarify the uranium redistribution and the migration mechanicsm. The results to date indicate that the citrate-dithionite-bicarbonate extractable minerals (hematite and geothite) are the minerals most highly associated with uranium in the secondary ore deposit; that the 234U/238U activity ratios of Morgan's and Tamm's solution extractable minerals (adsorbed trace minerals and carbonates, and amorphous iron minerals) are less than unity, and are almost the same as in the groundwater (these minerals may be accessible to the groundwater); and that further investigation is required to confirm the extraction scheme, eg whether all uranium by Tamm's solution extraction is from amorphous iron and uranium silicates and phosphates. 11 refs., 1 tab., 5 figs

  7. Sequential process for extraction and recovery of vanadium and uranium from wet process acids

    International Nuclear Information System (INIS)

    A process for preferentially extracting and recovering vanadium and uranium from wet process acids is claimed. The wet process acid first is contacted with a neutral organophosphorus compound to extract the vanadium values. The resulting loaded organic phase is separated from the wet process acid due to immiscibility of the acid and organic phases. The vanadium values then are separated from the organic phase by stripping. The raffinate separated from the first organic extractant then is contacted with a second organic extractant comprising a dialkyl-phosphoric acid and a neutral organo-phosphorus compound to extract the uranium values. The resulting loaded organic phase is separated from the wet process acid due to immiscibility of the acid and organic phases. The organic phase is stripped with a reductive stripping solution and the stripping solution then is oxidized to convert the uranium values to the hexavalent oxidation state. The oxidized solution then is contacted with another organic extractant to reextract the uranium to thereby concentrate the uranium product which then is stripped from the organic product with ammonium carbonate to form ammonium uranyl carbonate

  8. Comprehensive profiling of cartilage extracellular matrix formation and maturation using sequential extraction and label-free quantitative proteomics.

    Science.gov (United States)

    Wilson, Richard; Diseberg, Anders F; Gordon, Lavinia; Zivkovic, Snezana; Tatarczuch, Liliana; Mackie, Eleanor J; Gorman, Jeffrey J; Bateman, John F

    2010-06-01

    Articular cartilage is indispensable for joint function but has limited capacity for self-repair. Engineering of neocartilage in vitro is therefore a major target for autologous cartilage repair in arthritis. Previous analysis of neocartilage has targeted cellular organization and specific molecular components. However, the complexity of extracellular matrix (ECM) development in neocartilage has not been investigated by proteomics. To redress this, we developed a mouse neocartilage culture system that produces a cartilaginous ECM. Differential analysis of the tissue proteome of 3-week neocartilage and 3-day postnatal mouse cartilage using solubility-based protein fractionation targeted components involved in neocartilage development, including ECM maturation. Initially, SDS-PAGE analysis of sequential extracts revealed the transition in protein solubility from a high proportion of readily soluble (NaCl-extracted) proteins in juvenile cartilage to a high proportion of poorly soluble (guanidine hydrochloride-extracted) proteins in neocartilage. Label-free quantitative mass spectrometry (LTQ-Orbitrap) and statistical analysis were then used to filter three significant protein groups: proteins enriched according to extraction condition, proteins differentially abundant between juvenile cartilage and neocartilage, and proteins with differential solubility properties between the two tissue types. Classification of proteins differentially abundant between NaCl and guanidine hydrochloride extracts (n = 403) using bioinformatics revealed effective partitioning of readily soluble components from subunits of larger protein complexes. Proteins significantly enriched in neocartilage (n = 78) included proteins previously not reported or with unknown function in cartilage (integrin-binding protein DEL1; coiled-coil domain-containing protein 80; emilin-1 and pigment epithelium derived factor). Proteins with differential extractability between juvenile cartilage and neocartilage

  9. Recovery of Cobalt as Cobalt Oxalate from Cobalt Tailings Using Moderately Thermophilic Bioleaching Technology and Selective Sequential Extraction

    Directory of Open Access Journals (Sweden)

    Guobao Chen

    2016-07-01

    Full Text Available Cobalt is a very important metal which is widely applied in various critical areas, however, it is difficult to recover cobalt from minerals since there is a lack of independent cobalt deposits in nature. This work is to provide a complete process to recover cobalt from cobalt tailings using the moderately thermophilic bioleaching technology and selective sequential extraction. It is found that 96.51% Co and 26.32% Cu were extracted after bioleaching for four days at 10% pulp density. The mean compositions of the leach solutions contain 0.98 g·L−1 of Co, 6.52 g·L−1 of Cu, and 24.57 g·L−1 of Fe (III. The copper ion was then recovered by a solvent extraction process and the ferric ions were selectively removed by applying a goethite deironization process. The technological conditions of the above purification procedures were deliberately discussed. Over 98.6% of copper and 99.9% of ferric ions were eliminated from the leaching liquor. Cobalt was finally produced as cobalt oxalate and its overall recovery during the whole process was greater than 95%. The present bioleaching process of cobalt is worth using for reference to deal with low-grade cobalt ores.

  10. Assessing of distribution, mobility and bioavailability of exogenous Pb in agricultural soils using isotopic labeling method coupled with BCR approach

    International Nuclear Information System (INIS)

    Highlights: • Large amounts of exogenous Pb were found to distribute in reducible fractions. • Very few of exogenous Pb were found to distribute in acid-extractable fractions. • More than 60% of exogenous Pb in rhizosphere soils lost after planting. • Isotopic labeling method and SEP enable to explore Pb bioavailability in soil. -- Abstract: The contamination of Pb in agricultural soils is one of the most important ecological problems, which potentially results in serious health risk on human health through food chain. Hence, the fate of exogenous Pb contaminated in agricultural soils is needed to be deeply explored. By spiking soils with the stable enriched isotopes of 206Pb, the contamination of exogenous Pb2+ ions in three agricultural soils sampled from the estuary areas of Jiulong River, China was simulated in the present study, and the distribution, mobility and bioavailability of exogenous Pb in the soils were investigated using the isotopic labeling method coupled with a four-stage BCR (European Community Bureau of Reference) sequential extraction procedure. Results showed that about 60–85% of exogenous Pb was found to distribute in reducible fractions, while the exogenous Pb in acid-extractable fractions was less than 1.0%. After planting, the amounts of exogenous Pb presenting in acid-extractable, reducible and oxidizable fractions in rhizospheric soils decreased by 60–66%, in which partial exogenous Pb was assimilated by plants while most of the metal might transfer downward due to daily watering and applying fertilizer. The results show that the isotopic labeling technique coupled with sequential extraction procedures enables us to explore the distribution, mobility and bioavailability of exogenous Pb contaminated in soils, which may be useful for the further soil remediation

  11. Assessing of distribution, mobility and bioavailability of exogenous Pb in agricultural soils using isotopic labeling method coupled with BCR approach

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Zhi-Yong, E-mail: zhyhuang@jmu.edu.cn [College of Bioengineering, Jimei University, Xiamen 361021 (China); Xie, Hong [College of Bioengineering, Jimei University, Xiamen 361021 (China); Shandong Vocational Animal Science and Veterinary College, Weifang 261061 (China); Cao, Ying-Lan [College of Bioengineering, Jimei University, Xiamen 361021 (China); Cai, Chao [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Zhang, Zhi [College of Bioengineering, Jimei University, Xiamen 361021 (China)

    2014-02-15

    Highlights: • Large amounts of exogenous Pb were found to distribute in reducible fractions. • Very few of exogenous Pb were found to distribute in acid-extractable fractions. • More than 60% of exogenous Pb in rhizosphere soils lost after planting. • Isotopic labeling method and SEP enable to explore Pb bioavailability in soil. -- Abstract: The contamination of Pb in agricultural soils is one of the most important ecological problems, which potentially results in serious health risk on human health through food chain. Hence, the fate of exogenous Pb contaminated in agricultural soils is needed to be deeply explored. By spiking soils with the stable enriched isotopes of {sup 206}Pb, the contamination of exogenous Pb{sup 2+} ions in three agricultural soils sampled from the estuary areas of Jiulong River, China was simulated in the present study, and the distribution, mobility and bioavailability of exogenous Pb in the soils were investigated using the isotopic labeling method coupled with a four-stage BCR (European Community Bureau of Reference) sequential extraction procedure. Results showed that about 60–85% of exogenous Pb was found to distribute in reducible fractions, while the exogenous Pb in acid-extractable fractions was less than 1.0%. After planting, the amounts of exogenous Pb presenting in acid-extractable, reducible and oxidizable fractions in rhizospheric soils decreased by 60–66%, in which partial exogenous Pb was assimilated by plants while most of the metal might transfer downward due to daily watering and applying fertilizer. The results show that the isotopic labeling technique coupled with sequential extraction procedures enables us to explore the distribution, mobility and bioavailability of exogenous Pb contaminated in soils, which may be useful for the further soil remediation.

  12. Biodiesel production from wet microalgae feedstock using sequential wet extraction/transesterification and direct transesterification processes.

    Science.gov (United States)

    Chen, Ching-Lung; Huang, Chien-Chang; Ho, Kao-Chia; Hsiao, Ping-Xuan; Wu, Meng-Shan; Chang, Jo-Shu

    2015-10-01

    Although producing biodiesel from microalgae seems promising, there is still a lack of technology for the quick and cost-effective conversion of biodiesel from wet microalgae. This study was aimed to develop a novel microalgal biodiesel producing method, consisting of an open system of microwave disruption, partial dewatering (via combination of methanol treatment and low-speed centrifugation), oil extraction, and transesterification without the pre-removal of the co-solvent, using Chlamydomonas sp. JSC4 with 68.7 wt% water content as the feedstock. Direct transesterification with the disrupted wet microalgae was also conducted. The biomass content of the wet microalgae increased to 56.6 and 60.5 wt%, respectively, after microwave disruption and partial dewatering. About 96.2% oil recovery was achieved under the conditions of: extraction temperature, 45°C; hexane/methanol ratio, 3:1; extraction time, 80 min. Transesterification of the extracted oil reached 97.2% conversion within 15 min at 45°C and 6:1 solvent/methanol ratio with simultaneous Chlorophyll removal during the process. Nearly 100% biodiesel conversion was also obtained while conducting direct transesterification of the disrupted oil-bearing microalgal biomass. PMID:26196418

  13. Sequential recycling of enzymatic lipid-extracted hydrolysate in fermentations with a thraustochytrid.

    Science.gov (United States)

    Lowrey, Joshua; Armenta, Roberto E; Brooks, Marianne S

    2016-06-01

    This study extends the findings of prior studies proposing and validating nutrient recycling for the heterotrophic microalgae, Thraustochytrium sp. (T18), grown in optimized fed-batch conditions. Sequential nutrient recycling of enzymatically-derived hydrolysate in fermentors succeeded at growing the tested thraustochytrid strain, with little evidence of inhibition or detrimental effects upon culture health. The average maximum biomass obtained in the recycled hydrolysate was 63.68±1.46gL(-1) in 90h the first recycle followed by 65.27±1.15gL(-1) in 90h in the subsequent recycle of the same material. These compared to 58.59gL(-1) and 64.92gL(-1) observed in fresh media in the same time. Lipid production was slightly impaired, however, with a maximum total fatty acid content of 62.2±0.30% in the recycled hydrolysate compared to 69.4% in fresh control media. PMID:26994462

  14. Heavy Metal and Trace Metal Analysis in Soil by Sequential Extraction: A Review of Procedures

    OpenAIRE

    Amanda Jo Zimmerman; David C. Weindorf

    2010-01-01

    Quantification of heavy and trace metal contamination in soil can be arduous, requiring the use of lengthy and intricate extraction procedures which may or may not give reliable results. Of the many procedures in publication, some are designed to operate within specific parameters while others are designed for more broad application. Most procedures have been modified since their inception which creates ambiguity as to which procedure is most acceptable in a given situation. For this study, t...

  15. Application of rotating coiled columns to the fractionation of soil particles and to the sequential extraction of heavy-metal species from silty, dusty, and sandy fractions

    International Nuclear Information System (INIS)

    A complex procedure is developed for evaluating the degree of soil pollution with heavy metals, such as Zn, Pb, Cd, and Cu. Rotating coiled columns (RCCs) were used for both the fractionation of soil samples by their grain-size composition and the sequential extraction of heavy-metal species from silty, dusty, and sandy fractions. During the extraction of heavy-metal species, the soil fraction to be analyzed was retained in the column as a stationary phase, while aqueous solutions of extracting agents (mineral salts, acids, and complexing compounds) were sequentially pumped through the heterogeneous sample. The sequential extraction of element species from various soil fractions was carried out in the dynamic mode favorable to more complete extraction of metals. The use of RCCs allows the extraction of various heavy-metal species from soils to be performed in accordance with their grain size composition. The process of the extraction of metal species can be automated, and in this case the losses of sample components are reduced to a minimum

  16. Comparison of first pass bolus AIFs extracted from sequential 18F-FDG PET and DSC-MRI of mice

    International Nuclear Information System (INIS)

    Accurate kinetic modelling of in vivo physiological function using positron emission tomography (PET) requires determination of the tracer time–activity curve in plasma, known as the arterial input function (AIF). The AIF is usually determined by invasive blood sampling methods, which are prohibitive in murine studies due to low total blood volumes. Extracting AIFs from PET images is also challenging due to large partial volume effects (PVE). We hypothesise that in combined PET with magnetic resonance imaging (PET/MR), a co-injected bolus of MR contrast agent and PET ligand can be tracked using fast MR acquisitions. This protocol would allow extraction of a MR AIF from MR contrast agent concentration–time curves, at higher spatial and temporal resolution than an image-derived PET AIF. A conversion factor could then be applied to the MR AIF for use in PET kinetic analysis. This work has compared AIFs obtained from sequential DSC-MRI and PET with separate injections of gadolinium contrast agent and 18F-FDG respectively to ascertain the technique′s validity. An automated voxel selection algorithm was employed to improve MR AIF reproducibility. We found that MR and PET AIFs displayed similar character in the first pass, confirmed by gamma variate fits (p<0.02). MR AIFs displayed reduced PVE compared to PET AIFs, indicating their potential use in PET/MR studies

  17. Sequential solvent extraction for the modes of occurrence of selenium in coals of different ranks from the Huaibei Coalfield, China

    Science.gov (United States)

    Zhang, Y.; Liu, Gaisheng; Chou, C.-L.; Wang, L.; Kang, Y.

    2007-01-01

    Forms of selenium in bituminous coal, anthracite, and cokeite (natural coke) from Huaibei Coalfield, Anhui, China, have been determined by sequential solvent extraction. The selenium content in bulk samples is 4.0, 2.4, and 2.0 ??g/g in bituminous coal, anthracite, and cokeite, respectively. The six forms of selenium determined by six-step solvent extraction are water-leachable, ion-exchangeable, organic matter-associated, carbonate-associated, silicate-associated, and sulfide-associated. The predominant forms of selenium in bituminous coal are organic matter-associated (39.0%), sulfide-associated (21.1%), and silicate bound (31.8%); these three forms account for 92% of the total. The organic matter bound-selenium decrease dramatically from bituminous coal (39.0%) to anthracite (11.6%) and to cokeite (0%), indicating that organic matter bound selenium is converted to other forms during metamorphism of the coal, most likely sulfide-form. The sulfide-associated form increased remarkably from bituminous coal (21.1%) to anthracite (50.4%) and cokeite (54.5%), indicating the formation of selenium sulfide, possibly in pyrite during the transformation of bituminous coal to anthracite and cokeite. The silicate-associated selenium in bituminous coal (31.8%) is much higher than that in anthracite (16.4%) and cokeite (15.8%), indicating that silicate-associated selenium is partly converted to sulfide during metamorphism. ?? 2007 Zhang et al; licensee BioMed Central Ltd.

  18. Mercury Speciation by X-ray Absorption Fine Structure Spectroscopy and Sequential Chemical Extractions: A Comparison of Speciation Methods

    Science.gov (United States)

    Kim, C.S.; Bloom, N.S.; Rytuba, J.J.; Brown, Gordon E., Jr.

    2003-01-01

    Determining the chemical speciation of mercury in contaminated mining and industrial environments is essential for predicting its solubility, transport behavior, and potential bioavailability as well as for designing effective remediation strategies. In this study, two techniques for determining Hg speciation-X-ray absorption fine structure (XAFS) spectroscopy and sequential chemical extractions (SCE)-are independently applied to a set of samples with Hg concentrations ranging from 132 to 7539 mg/kg to determine if the two techniques provide comparable Hg speciation results. Generally, the proportions of insoluble HgS (cinnabar, metacinnabar) and HgSe identified by XAFS correlate well with the proportion of Hg removed in the aqua regia extraction demonstrated to remove HgS and HgSe. Statistically significant (> 10%) differences are observed however in samples containing more soluble Hg-containing phases (HgCl2, HgO, Hg3S2O 4). Such differences may be related to matrix, particle size, or crystallinity effects, which could affect the apparent solubility of Hg phases present. In more highly concentrated samples, microscopy techniques can help characterize the Hg-bearing species in complex multiphase natural samples.

  19. Sequential extraction of heavy metals in river sediments of an abandoned pyrite mining area: pollution detection and affinity series

    International Nuclear Information System (INIS)

    In this paper heavy metal pollution at an abandoned Italian pyrite mine has been investigated by comparing total concentrations and speciation of heavy metals (Fe, Cu, Mn, Zn, Pb and As) in a red mud sample and a river sediment. Acid digestions show that all the investigated heavy metals present larger concentrations in the sediment than in the tailing. A modified Tessier's procedure has been used to discriminate heavy metal bound to organic fraction from those originally present in the mineral sulphide matrix and to detect a possible trend of metal mobilisation from red mud to river sediment. Sequential extractions on bulk and size fractionated samples denote that sediment samples present larger percent concentrations of the investigated heavy metals in the first extractive steps (I-IV) especially in lower dimension size fractionated samples suggesting that heavy metals in the sediment are significantly bound by superficial adsorption mechanisms. - Capsule: A modified Tessier's procedure, discriminating organic and sulphide bound metals, was used to detect pollutant mobilisation from red mud to river sediment in an abandoned pyrite mine

  20. Distribution of natural radionuclides in sequentially extracted fractions of sediments from a marsh area in Southwest Spain: U isotopes

    International Nuclear Information System (INIS)

    A study of the distribution of U in different fractions of intertidal sediments collected in a marsh area enhanced by the radioactive wastes discharged from a fertilizer complex has been carried out. The study has shown that U isotopes are mainly located in non-residual fractions of the sediments. Coprecipitation with amorphous ferromanganese oxyhydroxides is the main process of incorporation of this element from the water column into the sediment. The residual fractions only contain some 5% of the total U in the sediment. Moreover, all fractions seem to reflect the same pattern of contamination, with in fact a quite good relationship between the U in most extracted fractions. Thus, those sediments located along the Odiel river basin have higher U concentrations in all the sequentially extracted fractions. Concentration ratios for Spartina densiflora have also been studied. In this paper, it has been considered that not all the substrate sediment takes part in the uptake of elements by the plant but only the non-residual fractions. Thus, a study of the dependence of these concentration ratios on the concentration in the non-residual fraction of sediments has been carried out

  1. Distribution of natural radionuclides in sequentially extracted fractions of sediments from a marsh area in Southwest Spain: U isotopes

    International Nuclear Information System (INIS)

    A study of the distribution of U in different fractions of inter tidal sediments collected in a marsh area enhanced by the radioactive wastes discharged from a fertilizer complex has been carried out. The study has shown that U isotopes are mainly located in non-residual fractions of the sediments. Coprecipitation with amorphous ferromanganese oxyhydroxides is the main process of incorporation of this element from the water column into the sediment. The residual fractions only contain some 5% of the total U in the sediment. Moreover, all fractions seem to reflect the same pattern of contamination, with in fact a quite good relationship between the U in most extracted fractions. Thus, those sediments located along the Odiel river basin have higher U concentrations in all the sequentially extracted fractions. Concentration ratios for Spartina densiflora have also been studied. In this paper, it has been considered that not all the substrate sediment takes part in the uptake of elements by the plant but only the non-residual fractions. Thus, a study of the dependence of these concentration ratios on the concentration in the non-residual fraction of sediments has been carried out

  2. Speciation Analysis of 129I and 127I in Aerosols Using Sequential Extraction and Mass Spectrometry Detection

    DEFF Research Database (Denmark)

    Zhang, Luyuan; Hou, Xiaolin; Xu, Sheng

    2015-01-01

    A new analytical method has been developed for speciation analysis of 127I and 129I in aerosols collected on polypropylene (PP) filter paper. Iodide, iodate, NaOH soluble iodine, and insoluble iodine were separated from aerosols using sequential extraction, chromatography separation, and alkaline...

  3. Rapid Determination of Plutonium Isotopes in Environmental Samples Using Sequential Injection Extraction Chromatography and Detection by Inductively Coupled Plasma Mass Spectrometry

    DEFF Research Database (Denmark)

    Qiao, Jixin; Hou, Xiaolin; Roos, Per;

    2009-01-01

    This article presents an automated method for the rapid determination of 239Pu and 240Pu in various environmental samples. The analytical method involves the in-line separation of Pu isotopes using extraction chromatography (TEVA) implemented in a sequential injection (SI) network followed by det...

  4. Multi-Elemental Inductively Coupled Plasma-Optical Emission Spectroscopic Calibration Problems of the Sequential Extraction Procedure for the Fractionation of the Heavy Metal Content from Aquatic Sediments

    OpenAIRE

    Heltai György; Fekete Ilona; Halász Gábor; Kovács Katalin (1978-) (biokémikus); Horváth Márk; Takács Anita; Boros Norbert; Győri Zoltán (1948-) (vegyész)

    2015-01-01

    For the characterisation of the environmental mobility of heavy metal contamination in aquatic sediments, the EU Bureau of Reference has proposed a fractionation by sequential extraction procedure. For its validation, the CRM-701 sample is available containing Cd, Cr, Cu, Ni, Pb, and Zn. In this paper, the matrix-matched calibration problems are presented. A multi-elemental inductively coupled plasma-optical emission technique is employed for the detection of heavy metals in the extracts. It ...

  5. Assessment of Heavy Metals Pollution in Yu - Water Copper by Modified BCR Extraction Procedure%BCR法研究铜矿区周边农田重金属形态分布

    Institute of Scientific and Technical Information of China (English)

    汤嘉南; 彭娜; 涂常青; 王似玉; 顾忠林

    2011-01-01

    The three- step BCR(eommunity bureau of reference)sequential extraction procedure method is used to analyse the spociation and bioavailability of heavy metals( Cu, Pb ,Zn, Mn)in agricultural soils around copper mine tailing in Meizhou. Results show that downstream soil around mine is polluted heavily, which is polluted more seri- ously than upstream soil. Soil aronud mine is polluted by Pb mainly. In upstream and downstream soil around mine, Cu, Zn, Mn is dominantly released in the residual fraction. Pb is mainly released in the reducible fraction. It means that in upstream and downstream soil, Pb and Zn has the highest and lowest bioavailability respetivly.%采用BCR(communitybureauofreference)连续提取法对梅县玉水铜矿区周边农田土壤重金属Cu、Pb、zIl和Mn的形态分布及其生物有效性进行了分析.结果表明,矿区下游地区农田土壤重金属污染比上游严重,属于重污染区,而上游土壤属于轻度污染.矿区上游和下游农田土壤中,Pb的污染贡献最大.上游和下游土壤中cu、Zn、Mn都主要分布在残渣态中,Pb主要分布在可还原态.上游和下游土壤中都以Pb的有效性最高,zn的有效性最低.

  6. Determination of N-nitrosamines in latex by sequential supercritical fluid extraction and derivatization.

    Science.gov (United States)

    Reche, F; Garrigós, M C; Marín, M L; Jiménez, A

    2002-11-01

    A new method to determine N-nitrosamines in latex products has been developed by combination of supercritical fluids and chemical derivatization. A new design for a liquid trap has been introduced. A factorial fractional design was used in order to evaluate the influence of the different factors affecting the process. Factors such as pressure, temperature, static and dynamic time, restrictor temperature and volume of an hydrobromic acid-acetic anhydride mixture (1:10, v/v) were included in the design. CO2 was used as the extraction fluid. Gas chromatography with nitrogen and phosphorus sensitive detection was employed to achieve good sensitivity attending to the molecular structure of these compounds (N-nitrosamines and their corresponding secondary amines). The obtained results have shown to be useful to increase selectivity and reduce sample handling. PMID:12462622

  7. On-line dynamic fractionation and automatic determination of inorganic phosphorus in environmental solid substrates exploiting sequential injection microcolumn extraction and flow injection analysis

    International Nuclear Information System (INIS)

    Sequential injection microcolumn extraction (SI-MCE) based on the implementation of a soil-containing microcartridge as external reactor in a sequential injection network is, for the first time, proposed for dynamic fractionation of macronutrients in environmental solids, as exemplified by the partitioning of inorganic phosphorus in agricultural soils. The on-line fractionation method capitalises on the accurate metering and sequential exposure of the various extractants to the solid sample by application of programmable flow as precisely coordinated by a syringe pump. Three different soil phase associations for phosphorus, that is, exchangeable, Al- and Fe-bound, and Ca-bound fractions, were elucidated by accommodation in the flow manifold of the three steps of the Hieltjes-Lijklema (HL) scheme involving the use of 1.0 M NH4Cl, 0.1 M NaOH and 0.5 M HCl, respectively, as sequential leaching reagents. The precise timing and versatility of SI for tailoring various operational extraction modes were utilized for investigating the extractability and the extent of phosphorus re-distribution for variable partitioning times. Automatic spectrophotometric determination of soluble reactive phosphorus in soil extracts was performed by a flow injection (FI) analyser based on the Molybdenum Blue (MB) chemistry. The 3σ detection limit was 0.02 mg P L-1 while the linear dynamic range extended up to 20 mg P L-1 regardless of the extracting media. Despite the variable chemical composition of the HL extracts, a single FI set-up was assembled with no need for either manifold re-configuration or modification of chemical composition of reagents. The mobilization of trace elements, such as Cd, often present in grazed pastures as a result of the application of phosphate fertilizers, was also explored in the HL fractions by electrothermal atomic absorption spectrometry

  8. Phenolic compounds and antioxidant activity of Pecan [Carya illinoinensis (Wangenh. C. Koch] kernel cake extracts obtained by sequential extraction

    Directory of Open Access Journals (Sweden)

    Block, Jane Mara

    2009-12-01

    Full Text Available The total phenolic and condensed tannin contents of different Pecan kernel cake extracts (ether, acetone, alcohol and distilled water were estimated and their antioxidant activities were evaluated through ABTS, DPPH and ß-carotene/linoleic acid systems. Color variations of the Pecan kernel cake were determined through an instrumental analysis using the CIE Lab system. Significantly higher levels (p El contenido de taninos condensado y fenoles totales de diferentes extractos de tortas de almendra de pecana (éter, acetona, alcohol y agua destilada fueron estimados y sus actividades antioxidantes fueron evaluadas mediantes los métodos con ABTS, DPPH y el sistema ß-caroteno/ácido linoleico. Las variaciones de color de la torta de almendra de pecana fueron determinadas mediante análisis instrumental usando el sistema CIE Lab. Los contenidos de fenoles totales, taninos condensados y actividad antioxidante, medida mediante los métodos con ABTS Y DPPH (30 min y 24 h, fueron significativamente más altos (p < 0.05 con el extracto de acetona (16.4 mg GAE/g; 31.2 mg CE/g; 235.3 μmol TEAC/g and 68.6 and 100.3 mg TEAC/g, respectivamente. El porcentaje de inhibición de la oxidación en el sistema ß-caroteno/ ácido linoleico vario desde 37.9 a 93.1% con el extracto de acetona a 300 ppm, mostrando resultados significativamente superiores. Las muestras con una mayor tendencia a tonos rojos presento los niveles más altos de taninos condensados.

  9. Comparative sorption and desorption behaviors of PFHxS and PFOS on sequentially extracted humic substances

    Institute of Scientific and Technical Information of China (English)

    Lixia Zhao; Yifeng Zhang; Shuhong Fang; Lingyan Zhu; Zhengtao Liu

    2014-01-01

    The sorption and desorption behaviors of two perfluoroalkane sulfonates (PFSAs),including perfluorohexane sulfonate (PFHxS) and perfluorooctane sulfonate (PFOS) on two humic acids (HAs) and humin (HM),which were extracted from a peat soil,were investigated.The sorption kinetics and isotherms showed that the sorption of PFOS on the humic substances (HSs) was much higher than PFHxS.For the same PFSA compound,the sorption on HSs followed the order of HM > HA2 > HA1.These suggest that hydrophobic interaction plays a key role in the sorption of PFSAs on HSs.The sorption capacities of PFSAs on HSs were significantly related to their aliphaticity,but negatively correlated to aromatic carbons,indicating the importance of aliphatic groups in the sorption of PFSAs.Compared to PFOS,PFHxS displayed distinct desorption hysteresis,probably due to irreversible pore deformation after sorption of PFHxS.The sorption of the two PFSAs on HSs decreased with an increase in pH in the solution.This is ascribed to the electrostatic interaction and hydrogen bonding at lower pH.Hydrophobic interaction might also be stronger at lower pH due to the aggregation of HSs.

  10. Elemental characterization of coal ash and its leachates using sequential extraction techniques

    International Nuclear Information System (INIS)

    Over 50 million tons of coal ash are produced annually in North America. Technological improvements in air pollution control have decreased stack emissions but have also increased contaminant concentrations in the ash of coal-fired boiler applications. The leaching of heavy metals and other elements during regulatory tests may cause coal ash to be classified as hazardous waste, complicating land disposal. The hazardous nature of coal ash remains unclear because current toxicity tests fail to effectively characterize the elemental distribution and chemical solubility of trace metals in the landfill environment. Leaching characteristics of ash samples can be investigated with various laboratory extraction procedures in association with multi-elemental analytical techniques (e.g., neutron activation analysis and inductively coupled plasma - atomic emission spectroscopy). Such methods provide more thorough analyses of coal ash leaching dynamics than the regulatory assessments can demonstrate. Regulatory elements including Ag, As, Ba, Cd, Cr, Hg, Pb, and Se were shown to remain in largely insoluble forms while elements such as B and S leached at higher levels. Experimental results may assist operators of coal-fired boiler industries in selecting coal types and disposal options to curtail the leaching of potentially toxic inorganic contaminants. (author) 12 refs.; 4 figs.; 3 tabs

  11. Sequential Total Variation Denoising for the Extraction of Fetal ECG from Single-Channel Maternal Abdominal ECG

    Directory of Open Access Journals (Sweden)

    Kwang Jin Lee

    2016-07-01

    Full Text Available Fetal heart rate (FHR is an important determinant of fetal health. Cardiotocography (CTG is widely used for measuring the FHR in the clinical field. However, fetal movement and blood flow through the maternal blood vessels can critically influence Doppler ultrasound signals. Moreover, CTG is not suitable for long-term monitoring. Therefore, researchers have been developing algorithms to estimate the FHR using electrocardiograms (ECGs from the abdomen of pregnant women. However, separating the weak fetal ECG signal from the abdominal ECG signal is a challenging problem. In this paper, we propose a method for estimating the FHR using sequential total variation denoising and compare its performance with that of other single-channel fetal ECG extraction methods via simulation using the Fetal ECG Synthetic Database (FECGSYNDB. Moreover, we used real data from PhysioNet fetal ECG databases for the evaluation of the algorithm performance. The R-peak detection rate is calculated to evaluate the performance of our algorithm. Our approach could not only separate the fetal ECG signals from the abdominal ECG signals but also accurately estimate the FHR.

  12. Sequential Total Variation Denoising for the Extraction of Fetal ECG from Single-Channel Maternal Abdominal ECG.

    Science.gov (United States)

    Lee, Kwang Jin; Lee, Boreom

    2016-01-01

    Fetal heart rate (FHR) is an important determinant of fetal health. Cardiotocography (CTG) is widely used for measuring the FHR in the clinical field. However, fetal movement and blood flow through the maternal blood vessels can critically influence Doppler ultrasound signals. Moreover, CTG is not suitable for long-term monitoring. Therefore, researchers have been developing algorithms to estimate the FHR using electrocardiograms (ECGs) from the abdomen of pregnant women. However, separating the weak fetal ECG signal from the abdominal ECG signal is a challenging problem. In this paper, we propose a method for estimating the FHR using sequential total variation denoising and compare its performance with that of other single-channel fetal ECG extraction methods via simulation using the Fetal ECG Synthetic Database (FECGSYNDB). Moreover, we used real data from PhysioNet fetal ECG databases for the evaluation of the algorithm performance. The R-peak detection rate is calculated to evaluate the performance of our algorithm. Our approach could not only separate the fetal ECG signals from the abdominal ECG signals but also accurately estimate the FHR. PMID:27376296

  13. Analysis of petroleum-contaminated soils by diffuse reflectance spectroscopy and sequential ultrasonic solvent extraction-gas chromatography.

    Science.gov (United States)

    Okparanma, Reuben N; Coulon, Frederic; Mouazen, Abdul M

    2014-01-01

    In this study, we demonstrate that partial least-squares regression analysis with full cross-validation of spectral reflectance data estimates the amount of polycyclic aromatic hydrocarbons in petroleum-contaminated tropical rainforest soils. We applied the approach to 137 field-moist intact soil samples collected from three oil spill sites in Ogoniland in the Niger Delta province (5.317°N, 6.467°E), Nigeria. We used sequential ultrasonic solvent extraction-gas chromatography as the reference chemical method. We took soil diffuse reflectance spectra with a mobile fibre-optic visible and near-infrared spectrophotometer (350-2500 nm). Independent validation of combined data from studied sites showed reasonable prediction precision (root-mean-square error of prediction = 1.16-1.95 mg kg(-1), ratio of prediction deviation = 1.86-3.12, and validation r(2) = 0.77-0.89). This suggests that the methodology may be useful for rapid assessment of the spatial variability of polycyclic aromatic hydrocarbons in petroleum-contaminated soils in the Niger Delta to inform risk assessment and remediation. PMID:24077341

  14. Speciation of Pb, Cu and Zn determined by sequential extraction for identification of air pollution sources in Syria

    Science.gov (United States)

    Al-Masri, M. S.; Al-Kharfan, K.; Al-Shamali, K.

    Speciation of three trace elements (Zn, Pb, Cu) in air particulates of two Syrian cities (Tartous and Darya) with different climate conditions and industrial emissions has been studied. Air filters were collected during 2000-2001 and extracted chemically using different selective fluids in an attempt to identify the different forms of trace elements. Approximately 60% of lead in air particulates of both cities was found to be associated with organic materials produced by incomplete burning of vehicles fuels and residential heating; the remaining 40% of lead was as lead oxides and mineral acids soluble compounds. Zinc was found in oxides (28-65%) samples collected in Tartous city, indicating that the Tartous cement factory and phosphate loading cargoes are the main source of emissions. In the Darya filters, zinc associated with organic materials (28-49%) was related to the presence of plastic molding industries and corroding car tires. In addition, copper was also found to be in the form of oxides (19-46%) in both cities in the summer periods, while 13-25% and 35% are associated with organic materials and silicates, respectively. Differences in chemical forms of the studied trace elements in air particulates were found to be related to differences in air pollution sources and differences in human behaviour throughout the year. Therefore, chemical fractionation of trace elements in air particulates using sequential leaching can be used for identification of air pollutions sources in urban and industrial areas.

  15. Sequential Extraction on Oil Sandstones from TZ401 Well——A Case Study on Filling History of Hydrocarbon Reservoir

    Institute of Scientific and Technical Information of China (English)

    Pan Changchun; Liu Dayong

    2008-01-01

    Sequential extraction was performed on two oil sandstones from the Upper Carboniferous oil columns of TZ401 well.The free oils of these two oil sandstones and a crude oil from the Lower Carboniferous oil column of this well have low ratios of C28/C27+C28+ C29) steranes and gammacerane/C31 hopanes,ranging of 0.11-0.16 and 0.09-0.15,respectively,similar to those from the Middle-Upper Ordovician source rock.However,these two ratios for the adsorbed and inclusion oils of these two oil sandstones are relatively high,ranging of 0.29-0.31 and 0.26-0.40,respectively,similar to those of the Cambrian-Lower Ordovician source rock.This result demonstrates that the initial oil charging the reservoirs was derived from the Cambrian-Lower Ordovician source rock,whereas the later charging oil was derived from the Middle--Upper Ordovician source rock.

  16. Fate of mercury in flue gas desulfurization gypsum determined by Temperature Programmed Decomposition and Sequential Chemical Extraction.

    Science.gov (United States)

    Zhu, Zhenwu; Zhuo, Yuqun; Fan, Yaming; Wang, Zhipeng

    2016-05-01

    A considerable amount of Hg is retained in flue gas desulfurization (FGD) gypsum from Wet Flue Gas Desulfurization (WFGD) systems. For this reason, it is important to determine the species of Hg in FGD gypsum not only to understand the mechanism of Hg removal by WFGD systems but also to determine the final fate of Hg when FGD gypsum is disposed. In this study, Temperature Programmed Decomposition (TPD) and Sequential Chemical Extraction (SCE) were applied to FGD gypsum to identify the Hg species in it. The FGD gypsum samples were collected from seven coal-fired power plants in China, with Hg concentrations ranging from 0.19 to 3.27μg/g. A series of pure Hg compounds were used as reference materials in TPD experiments and the results revealed that the decomposition temperatures of different Hg compounds increase in the order of Hg2Cl2extraction fractions to certain Hg species by SCE. The fact that the primary compounds in FGD gypsum are HgS phases leads the leaching of Hg in the natural environment to be quite low, but a considerable amount of Hg may be released during the industrial heating process. PMID:27155422

  17. Evaluation of mobility, bioavailability and toxicity of Pb and Cd in contaminated soil using TCLP, BCR and earthworms.

    Science.gov (United States)

    Kede, Maria Luiza F M; Correia, Fabio V; Conceição, Paulo F; Junior, Sidney F Salles; Marques, Marcia; Moreira, Josino C; Pérez, Daniel V

    2014-11-01

    The objective of the present study was to investigate the reduction of mobility, availability and toxicity found in soil contaminated with lead (Pb) and cadmium (Cd) from Santo Amaro Municipality, Bahia, Brazil using two combined methods, commonly tested separately according to the literature: metal mobilization with phosphates and phytoextraction. The strategy applied was the treatment with two sources of phosphates (separately and mixed) followed by phytoremediation with vetiver grass (Vetiveria zizanioides (L.)). The treatments applied (in triplicates) were: T1-potassium dihydrogen phosphate (KH2PO4); T2-reactive natural phosphate fertilizer (NRP) and; T3-a mixture 1:1 of KH2PO4 and NRP. After this step, untreated and treated soils were planted with vetiver grass. The extraction procedures and assays applied to contaminated soil before and after the treatments included metal mobility test (TCLP); sequential extraction with BCR method; toxicity assays with Eisenia andrei. The soil-to-plant transfer factors (TF) for Pb and Cd were estimated in all cases. All treatments with phosphates followed by phytoremediation reduced the mobility and availability of Pb and Cd, being KH2PO4 (T1) plus phytoremediation the most effective one. Soil toxicity however, remained high after all treatments. PMID:25386955

  18. Evaluation of Mobility, Bioavailability and Toxicity of Pb and Cd in Contaminated Soil Using TCLP, BCR and Earthworms

    Directory of Open Access Journals (Sweden)

    Maria Luiza F. M. Kede

    2014-11-01

    Full Text Available The objective of the present study was to investigate the reduction of mobility, availability and toxicity found in soil contaminated with lead (Pb and cadmium (Cd from Santo Amaro Municipality, Bahia, Brazil using two combined methods, commonly tested separately according to the literature: metal mobilization with phosphates and phytoextraction. The strategy applied was the treatment with two sources of phosphates (separately and mixed followed by phytoremediation with vetiver grass (Vetiveria zizanioides (L.. The treatments applied (in triplicates were: T1—potassium dihydrogen phosphate (KH2PO4; T2—reactive natural phosphate fertilizer (NRP and; T3—a mixture 1:1 of KH2PO4 and NRP. After this step, untreated and treated soils were planted with vetiver grass. The extraction procedures and assays applied to contaminated soil before and after the treatments included metal mobility test (TCLP; sequential extraction with BCR method; toxicity assays with Eisenia andrei. The soil-to-plant transfer factors (TF for Pb and Cd were estimated in all cases. All treatments with phosphates followed by phytoremediation reduced the mobility and availability of Pb and Cd, being KH2PO4 (T1 plus phytoremediation the most effective one. Soil toxicity however, remained high after all treatments.

  19. Sequential cloud point extraction for the speciation of mercury in seafood by inductively coupled plasma optical emission spectrometry

    International Nuclear Information System (INIS)

    A novel nonchromatographic speciation technique for the speciation of mercury by sequential cloud point extraction (CPE) combined with inductively coupled plasma optical emission spectrometry (ICP-OES) was developed. The method based on Hg2+ was complexed with I- to form HgI42-, and the HgI42- reacted with the methyl green (MG) cation to form hydrophobic ion-associated complex, and the ion-associated complex was then extracted into the surfactant-rich phase of the non-ionic surfactant octylphenoxypolyethoxyethanol (Triton X-114), which are subsequently separated from methylmercury (MeHg+) in the initial solution by centrifugation. The surfactant-rich phase containing Hg(II) was diluted with 0.5 mol L-1 HNO3 for ICP-OES determination. The supernatant is also subjected to the similar CPE procedure for the preconcentration of MeHg+ by the addition of a chelating agent, ammonium pyrrolidine dithiocarbamate (APDC), in order to form water-insolvable complex with MeHg+. The MeHg+ in the micelles was directly analyzed after disposal as describe above. Under the optimized conditions, the extraction efficiency was 93.5% for Hg(II) and 51.5% for MeHg+ with the enrichment factor of 18.7 for Hg(II) and 10.3 for MeHg+, respectively. The limits of detection (LODs) were 56.3 ng L-1 for Hg(II) and 94.6 ng L-1 for MeHg+ (as Hg) with the relative standard deviations (RSDs) of 3.6% for Hg(II) and 4.5% for MeHg+ (C = 10 μg L-1, n = 7), respectively. The developed technique was applied to the speciation of mercury in real seafood samples and the recoveries for spiked samples were found to be in the range of 93.2-108.7%. For validation, a certified reference material of DORM-2 (dogfish muscle) was analyzed and the determined values are in good agreement with the certified values

  20. Extraction and preconcentration of trace levels of cobalt using functionalized magnetic nanoparticles in a sequential injection lab-on-valve system with detection by electrothermal atomic absorption spectrometry

    International Nuclear Information System (INIS)

    Graphical abstract: An approach to performing extraction and preconcentration employing functionalized magnetic particles for the determination of cobalt in the sequential injection lab-on-valve system using detection by electrothermal atomic absorption spectrometry. Highlights: ► New SPE method for cobalt separation/preconcentration was reported. ► Functionalized magnetic nanoparticles were used as adsorbent. ► Extraction, elution, and detection procedures were performed in the LOV system. ► This automatic extraction technique provided a good platform for metal analysis. - Abstract: A new approach to performing extraction and preconcentration employing functionalized magnetic nanoparticles for the determination of trace metals is presented. Alumina-coated iron oxide nanoparticles were synthesized and used as the solid support. The nanoparticles were functionalized with sodium dodecyl sulfate and used as adsorbents for solid phase extraction of the analyte. Extraction, elution, and detection procedures were performed sequentially in the sequential injection lab-on-valve (SI-LOV) system followed by electrothermal atomic absorption spectrometry (ETAAS). Mixtures of hydrophobic analytes were successfully extracted from solution using the synthesized magnetic adsorbents. The potential use of the established scheme was demonstrated by taking cobalt as a model analyte. Under the optimal conditions, the calibration curve showed an excellent linearity in the concentration range of 0.01–5 μg L−1, and the relative standard deviation was 2.8% at the 0.5 μg L−1 level (n = 11). The limit of detection was 6 ng L−1 with a sampling frequency of 18 h−1. The present method has been successfully applied to cobalt determination in water samples and two certified reference materials.

  1. Development of on-line single-drop micro-extraction sequential injection system for electrothermal atomic absorption spectrometric determination of trace metals

    International Nuclear Information System (INIS)

    A novel automatic sequential injection (SI) single-drop micro-extraction (SDME) system is proposed as versatile approach for on-line metal preconcentration and/or separation. Coupled to electrothermal atomic absorption spectrometry (ETAAS) the potentials of this SI scheme are demonstrated for trace cadmium determination in water samples. A non-charged complex of cadmium with ammonium diethyldithiophosphate (DDPA) was produced and extracted on-line into a 60 μL micro-drop of di-isobutyl ketone (DIBK). The extraction procedure was performed into a newly designed flow-through extraction cell coupled on a sequential injection manifold. As the complex Cd(II)-DDPA flowed continuously around the micro-droplet, the analyte was extracting into the solvent micro-drop. All the critical parameters were optimized and offered good performance characteristics and high preconcentration ratios. For 600 s micro-extraction time, the enhancement factor was 10 and the sampling frequency was 6 h-1. The detection limit was 0.01 μg L-1 and the precision (RSD at 0.1 μg L-1 of cadmium) was 3.9%. The proposed method was evaluated by analyzing certified reference material

  2. Arsenic speciation and mobility in mine wastes from a copper–arsenic mine in Devon, UK : an SEM, XAS, sequential chemical extraction study

    OpenAIRE

    Palumbo-Roe, Barbara; Klinck, Ben; Cave, Mark

    2007-01-01

    The nature of As speciation is a determining factor for As mobility in mine wastes. In this study, scanning electron microscopy (SEM), X-ray absorption spectroscopy and sequential chemical extraction methods were used for the environmental, mineralogical and genetic characterisation of mine spoil and calciner wastes from Devon Great Consols Mine, an abandoned copper–arsenic mine in Devon, UK. The geochemical control of As-bearing phases on dissolved As during leaching was investigated. ...

  3. Methods of Determining Lead Speciation in Fly Ash by X-ray Absorption Fine-Structure Spectroscopy and a Sequential Extraction Procedure

    OpenAIRE

    Funatsuki, Atsushi; Takaoka, Masaki; Oshita, Kazuyuki; Takeda, Nobuo

    2012-01-01

    Understanding the chemical state of lead in fly ash generated from a waste thermal treatment is important, since the toxicity and solubility of the element depends on its chemical state. This study identified three potential methods for obtaining quantitative information regarding the chemical state of lead in fly ash: X-ray absorption near edge structure (XANES) analysis, extended X-ray absorption fine structure (EXAFS) analysis, and the sequential extraction procedure. The result of this pr...

  4. Characterization of phosphorus species in sediments from the Arabian Sea oxygen minimum zone: Combining sequential extractions and X-ray spectroscopy

    OpenAIRE

    Kraal, Peter; Bostick, Benjamin C.; Behrends, Thilo; Reichart, Gert-Jan; Slomp, Caroline P.

    2015-01-01

    The bulk phosphorus (P) distribution in sediment samples from the oxygen minimum zone of the northern Arabian Sea was determined using two methods: sequential chemical extraction (the ‘SEDEX’ procedure) and X-ray absorption near-edge structure (XANES) spectroscopy of the phosphorus K-edge. Our results show good agreement between iron (Fe-)associated P and calcium phosphate minerals (Ca-P) determined by both methods. Furthermore, we find that SEDEX exchangeable P likely represents loosely Fe-b...

  5. Determination, speciation and distribution of mercury in soil in the surroundings of a former chlor-alkali plant: assessment of sequential extraction procedure and analytical technique

    OpenAIRE

    Frentiu, Tiberiu; Pintican, Bogdan Petru; Butaciu, Sanziana; Mihaltan, Alin Ironim; Ponta, Michaela; Frentiu, Maria

    2013-01-01

    Background The paper presents the evaluation of soil contamination with total, water-available, mobile, semi-mobile and non-mobile Hg fractions in the surroundings of a former chlor-alkali plant in connection with several chemical soil characteristics. Principal Component Analysis and Cluster Analysis were used to evaluate the chemical composition variability of soil and factors influencing the fate of Hg in such areas. The sequential extraction EPA 3200-Method and the determination technique...

  6. Sequential separation and substoichiometric extraction of cobalt(II), copper(II) and zinc(II) using organic reagents (Preprint No. CT-52)

    International Nuclear Information System (INIS)

    A rapid, selective and simple method has been developed for the sequential separation and substoichiometric extraction of cobalt(II), copper(II) and zinc(II) using organic reagents (isonitrosobenzoylacetone and 1,2,3-benzotriazole) under different experimental conditions. 60Co, 64Cu and 65Zn were used as tracers. The reliability of the separation was checked by γ-ray spectrometry. (author)

  7. Critical evaluation of sequential extraction and sink-float methods used for the determination of Ga and Ge affinity in lignite

    Energy Technology Data Exchange (ETDEWEB)

    Zdenek Klika; Lenka Ambruzova; Ivana Sykorova; Jana Seidlerova; Ivan Kolomaznik [VSB-Technical University Ostrava, Ostrava (Czech Republic)

    2009-10-15

    The affinities of Ga and Ge in lignite were determined using sequential extraction (SE) and element affinity calculation (EAC) based on sink-float data. For this study a bulk lignite sample was fractioned into two sets. The first set of samples (A) consisted of the different grain sizes fractions; the second one set (B) was prepared by density fractionation. Sequential extractions (1) were performed on both sets of fractions with very good agreement between determined organic elements affinities (OEA of Ga evaluated from A data is 32%, from B data 35%; OEA of Ge evaluated from A data is 31% and from B data 26%). The data of B lignite fractions were evaluated using two element affinity calculations: (a) EAC (I) of Klika and Kolomaznk (2) and (b) newly prepared subroutine EAC (II) based on quantitative contents of lignite macerals and minerals. There was also good agreement between both methods obtained (OEA of Ga calculated by EAC (I) is 83% and by EAC (II) 77%; OEA of Ge calculated by EAC (I) is 89% and by EAC (II) 97%). The significant differences of organic elements affinities of Ga and Ge evaluated by sequential extraction and by element affinity calculation based on sink-float data are discussed. 34 refs., 7 figs., 6 tabs.

  8. Determination of As(III) and As(V) in soils using sequential extraction combined with flow injection hydride generation atomic fluorescence detection

    International Nuclear Information System (INIS)

    An analytical procedure for determination of As(III) and As(V) in soils using sequential extraction combined with flow injection (FI) hydride generation atomic fluorescence spectrometry (HG-AFS) was presented. The soils were sequentially extracted by water, 0.6 mol l-1 KH2PO4 solution, 1% (v/v) HCl solution and 1% (w/v) NaOH solution. The arsenite (As(III)) in extract was analyzed by HG-AFS in the medium of 0.1 mol l-1 citric acid solution, then the total arsenic in extract was determined by HG-AFS using on-line reduction of arsenate with L-cysteine. The concentration of arsenate (As(V)) was calculated by the difference. The optimum conditions of extraction and determination were studied in detail. The detection limit (3σ) for As(III) and As(V) were 0.11 and 0.07 μg l-1, respectively. The relative standard deviation (R.S.D.) was 1.43% (n=11) at the 10 μg l-1 As level. The method was applied in the determination of As(III) and As(V) of real soils and the recoveries of As(III) and As(V) were in the range of 89.3-118 and 80.4-111%, respectively

  9. Identification of radionuclide partitioning in soils and sediments: Determination of optimum conditions for the exchangeable fraction of the nIST standard sequential extraction protocol

    International Nuclear Information System (INIS)

    We are developing the NIST standard sequential extraction protocol for identifying the fractionation of radioactive elements in soils and sediments. The procedure is designed to partition a soil or sediment sample into six operationally-defined fractions. A full-factorial experimental design/data analysis methodology was used to establish the optimum conditions for the first of these six fractions, called 'exchangeables'. Reaction time, reagent concentration and reaction temperature were chosen as experimental variables. The criteria for choosing optimum conditions were the maximum extraction of 238U combined with a minimum dissolution of non-targeted geochemical phases. Reagent concentration (i.e. ionic strength) is shown to be the controlling factor in the extraction of exchangeable 238U. The optimum (exchangeable) conditions, based on these experiments are: time=1 h; temperature=25 deg. C and concentration=0.4 M MgCl2

  10. Sequential leaching extraction of 239,240Pu, 238Pu, 241Pu, 237Np and 241Am from a mud sample: An intercomparison study

    International Nuclear Information System (INIS)

    The transuranics content of a mud sample taken from a nuclear waste storage container was analysed employing two different sequential extraction methods. The following fractions were isolated: (1)Water soluble (2) Readily available (3) Carbonate bound and specifically adsorbed (4) Organically bound (5) Oxide and hydroxides bound and (6) residual. Both methods differ in the reagents employed, the extraction sequence applied as well as the temperature and means of extraction. The 239,240Pu, 238Pu, 237Np and 241Am extracted in each phase were determined using standard radiochemical procedures. 241Pu was analysed through the 241Am in-growth on just one old disk of the residual fraction containing plutonium. Plutonium was mainly associated to organic-oxides fractions (89-92 %). The percentage extracted in each fraction depended on the method and the extraction sequence used. The soluble fraction of plutonium was less than 13%. Neptunium seemed to be the more soluble than the other transuranics (27%) and the americium showed a tendency to be associated to carbonates (30%). (author)

  11. Evaluating the Mobility of Arsenic in Synthetic Iron-containing Solids Using a Modified Sequential Extraction Method

    OpenAIRE

    Shan, Jilei; Sáez, A. Eduardo; Ela, Wendell P.

    2010-01-01

    Many water treatment technologies for arsenic removal that are used today produce arsenic-bearing residuals which are disposed in non-hazardous landfills. Previous works have established that many of these residuals will release arsenic to a much greater extent than predicted by standard regulatory leaching tests (e.g. the toxicity characteristic leaching procedure, TCLP) and, consequently, require stabilization to ensure benign behavior after disposal. In this work, a four-step sequential ex...

  12. Molecular Detection of BCR-ABL in Chronic Myeloid Leukemia.

    Science.gov (United States)

    Qin, Ya-Zhen; Huang, Xiao-Jun

    2016-01-01

    All chronic myeloid leukemia (CML) patients have the BCR-ABL fusion gene. The constitutively activated BCR-ABL tyrosine kinase is a critical pathogenetic event in CML. Tyrosine kinase inhibitors (TKIs), such as imatinib, are synthesized small molecules that primarily target BCR-ABL tyrosine kinases and have become a first-line treatment for CML. Detection of BCR-ABL transcript level by real-time quantitative polymerase chain reaction (RQ-PCR) is a clinical routine for evaluating TKI treatment efficacy and predicting long-term response. Furthermore, because they are a main TKI resistance mechanism, the BCR-ABL tyrosine kinase domain (TKD) point mutations that are detected by Sanger sequencing can help clinicians make decisions on subsequent treatment selections. Here, we present protocols for the two abovementioned molecular methods for CML analysis. PMID:27581134

  13. Development of an automated sequential injection on-line solvent extraction-back extraction procedure as demonstrated for the determination of cadmium with detection by electrothermal atomic absorption spectrometry

    DEFF Research Database (Denmark)

    Wang, Jianhua; Hansen, Elo Harald

    2002-01-01

    An automated sequential injection (SI) on-line solvent extraction-back extraction separation/preconcentration procedure is described. Demonstrated for the assay of cadmium by electrothermal atomic absorption spectrometry (ETAAS), the analyte is initially complexed with ammonium...... pyrrolidinedithiocarbamate (APDC) in citrate buffer and the chelate is extracted into isobutyl methyl ketone (IBMK), which is separated from the aqueous phase by means of a newly designed dual-conical gravitational phase separator. A metered amount of the organic eluate is aspirated and stored in the PTFE holding coil (HC......) of the SI-system. Afterwards, it is dispensed and mixed with an aqueous back extractant of dilute nitric acid containing Hg(II) ions as stripping agent, thereby facilitating a rapid metal-exchange reaction with the APDC ligand and transfer of the Cd into the aqueous phase. The aqueous phase is...

  14. Trace metal distribution in the Arosa estuary (N.W. Spain): The application of a recently developed sequential extraction procedure for metal partitioning

    International Nuclear Information System (INIS)

    A study of the trace metal distribution in sediment samples from the Galician coast (Spain) has been performed. A multielement extraction method optimised via experimental design has been employed. The method uses centrifugation to pass the extractant solution at varying pH, through the sediment sample. The sequential leaches were collected and analysed by ICP-AES. Chemometric approaches were utilised to identify the composition of the physico-chemical components in order to characterise the sample. The samples collected at different sites could be classified according to their differences in metal bio-availability and important information regarding element distribution within the physico-chemical components is given. The method has proved to be a quick and reliable way to evaluate sediment samples for environmental geochemistry analysis. In addition, this approach has potential as fast screening method for the bio-availability of metals in the environment

  15. Induction of autophagy by Imatinib sequesters Bcr-Abl in autophagosomes and down-regulates Bcr-Abl protein.

    LENUS (Irish Health Repository)

    Elzinga, Baukje M

    2013-06-01

    Chronic Myeloid Leukemia (CML) is a disease of hematopoietic stem cells which harbor the chimeric gene Bcr-Abl. Expression levels of this constitutively active tyrosine kinase are critical for response to tyrosine kinase inhibitor treatment and also disease progression, yet the regulation of protein stability is poorly understood. We have previously demonstrated that imatinib can induce autophagy in Bcr-Abl expressing cells. Autophagy has been associated with the clearance of large macromolecular signaling complexes and abnormal proteins, however, the contribution of autophagy to the turnover of Bcr-Abl protein in imatinib treated cells is unknown. In this study, we show that following imatinib treatment, Bcr-Abl is sequestered into vesicular structures that co-localize with the autophagy marker LC3 or GABARAP. This association is inhibited by siRNA mediated knockdown of autophagy regulators (Beclin 1\\/ATG7). Pharmacological inhibition of autophagy also reduced Bcr-Abl\\/LC3 co-localization in both K562 and CML patient cells. Bcr-Abl protein expression was reduced with imatinib treatment. Inhibition of both autophagy and proteasome activity in imatinib treated cells was required to restore Bcr-Abl protein levels to those of untreated cells. This ability to down-regulate Bcr-Abl protein levels through the induction of autophagy may be an additional and important feature of the activity of imatinib.

  16. Assessment of metal bioavailability in the vineyard soil-grapevine system using different extraction methods.

    Science.gov (United States)

    Vázquez Vázquez, Francisco A; Pérez Cid, Benita; Río Segade, Susana

    2016-10-01

    This study was focused on the assessment of single and sequential extraction methods to predict the bioavailability of metals in the vineyard soil-grapevine system. The modified BCR sequential extraction method and two single-step extraction methods based on the use of EDTA and acetic acid were applied to differently amended vineyard soils. The variety effect was studied on the uptake of metals by leaves and grapes. Most of the elements studied (Ca, Mg, Cu, Fe, Mn, Zn and Pb) were weakly mobilized from vineyard soils, with the exception of Cu and Mn. The determination of total metal content in leaves and grapes showed a different accumulation pattern in the two parts of the vine. A significant relationship was observed, for all the elements studied except for Fe, between the content bioavailable in the soil and the accumulated in both leaves and grapes (R=0.602-0.775, p<0.01). PMID:27132841

  17. On-line liquid phase micro-extraction based on drop-in-plug sequential injection lab-at-valve platform for metal determination

    International Nuclear Information System (INIS)

    Highlights: ► Drop-in-plug micro-extraction based on SI-LAV platform for metal preconcentration. ► Automatic liquid phase micro-extraction coupled with FAAS. ► Organic solvents with density higher than water are used. ► Lead determination in environmental water and urine samples. -- Abstract: A novel automatic on-line liquid phase micro-extraction method based on drop-in-plug sequential injection lab-at-valve (LAV) platform was proposed for metal preconcentration and determination. A flow-through micro-extraction chamber mounted at the selection valve was adopted without the need of sophisticated lab-on-valve components. Coupled to flame atomic absorption spectrometry (FAAS), the potential of this lab-at-valve scheme is demonstrated for trace lead determination in environmental and biological water samples. A hydrophobic complex of lead with ammonium pyrrolidine dithiocarbamate (APDC) was formed on-line and subsequently extracted into an 80 μL plug of chloroform. The extraction procedure was performed by forming micro-droplets of aqueous phase into the plug of the extractant. All critical parameters that affect the efficiency of the system were studied and optimized. The proposed method offered good performance characteristics and high preconcentration ratios. For 10 mL sample consumption an enhancement factor of 125 was obtained. The detection limit was 1.8 μg L−1 and the precision expressed as relative standard deviation (RSD) at 50.0 μg L−1 of lead was 2.9%. The proposed method was evaluated by analyzing certified reference materials and applied for lead determination in natural waters and urine samples

  18. Lead isotopes combined with a sequential extraction procedure for source apportionment in the dry deposition of Asian dust and non-Asian dust.

    Science.gov (United States)

    Lee, Pyeong-Koo; Yu, Soonyoung

    2016-03-01

    Lead isotopic compositions were determined in leachates that were generated using sequential extractions of dry deposition samples of Asian dust (AD) and non-Asian dust (NAD) and Chinese desert soils, and used to apportion Pb sources. Results showed significant differences in (206)Pb/(207)Pb and (206)Pb/(204)Pb isotopic compositions in non-residual fractions between the dry deposition samples and the Chinese desert soils while (206)Pb/(207)Pb and (206)Pb/(204)Pb isotopic compositions in residual fraction of the dry deposition of AD and NAD were similar to the mean (206)Pb/(207)Pb and (206)Pb/(204)Pb in residual fraction of the Alashan Plateau soil. These results indicate that the geogenic materials of the dry deposition of AD and NAD were largely influenced by the Alashan Plateau soil, while the secondary sources of the dry deposition were different from those of the Chinese desert soils. In particular, the lead isotopic compositions in non-residual fractions of the dry deposition were homogenous, which implies that the non-residual four fractions (F1 to F4) shared the primary anthropogenic origin. (206)Pb/(207)Pb values and the predominant wind directions in the study area suggested that airborne particulates of heavily industrialized Chinese cities were one of the main Pb sources. Source apportionment calculations showed that the average proportion of anthropogenic Pb in the dry deposition of AD and NAD was 87% and 95% respectively in total Pb extraction, 92% and 97% in non-residual fractions, 15% and 49% in residual fraction. Approximately 81% and 80% of the anthropogenic Pb was contributed by coal combustion in China in the dry deposition of AD and NAD respectively while the remainder was derived from industrial Pb contamination. The research result proposes that sequential extractions with Pb isotope analysis are a useful tool for the discrimination of anthropogenic and geogenic origins in highly contaminated AD and NAD. PMID:26708760

  19. Origin of brines, salts and carbonate from shales of the Marcellus Formation: Evidence from geochemical and Sr isotope study of sequentially extracted fluids

    International Nuclear Information System (INIS)

    Highlights: • Cuttings from the Marcellus Shale and adjacent units were sequentially leached. • 87Sr/86Sr ratios of extractable Sr are similar to Marcellus produced water values. • Marcellus produced water chemistry is not explained only by water-shale interaction. • Shale leachates record the early geologic history of fluid-shale interaction. • Some Middle Devonian formation water has been isolated since the late Paleozoic. - Abstract: Fluids co-produced with methane from hydraulically fractured organic-rich shales of the Marcellus Formation (USA) are characterized by high total dissolved solids (TDS), including elevated levels of Ba, Sr and Br. To investigate the source and geologic history of these high-TDS fluids and their dissolved constituents, we carried out a series of sequential extraction experiments on dry-drilled cuttings extracted within, below and above the Marcellus Shale from a well in Tioga County, New York State. The experiments were designed to extract (1) water soluble components, (2) exchangeable cations, (3) carbonate minerals, and (4) hydrochloric acid-soluble constituents. The geochemistry of the resultant leachates highlights the different geochemical reservoirs for extractable elements within the shale; notably, Na and Br were largely water-soluble, while Ba was extracted primarily from exchangeable sites, and Ca and Sr were found both in exchangeable sites and carbonate. Strontium isotope ratios measured on the leachates indicate that each of the element reservoirs has a distinct value. Measured 87Sr/86Sr ratios in the water soluble component are similar to those of Marcellus produced water, while the ion exchange reservoir yields lower ratios, and carbonate Sr is lower still, approaching Devonian-Silurian seawater values. Despite the isotopic similarity of water leachates and produced water, the total water chemistry argues against generation of produced water by interaction of hydraulic fracturing fluid with “dry” shale

  20. Evaluation of antioxidant and antimicrobial properties of Manilkara zapota L. (chiku) leaves by sequential soxhlet extraction method

    Institute of Scientific and Technical Information of China (English)

    Mital Kaneria; Sumitra Chanda

    2012-01-01

    Objective: Antioxidant and antimicrobial properties of Manilkara zapota L. (chiku) leaves was studied. Methods: The antioxidant property of different solvent extracts of Manilkara zapota L. leaves was evaluated by DPPH free radical, superoxide anion radical, hydroxyl radical scavenging activity and reducing capacity assessment, while the antimicrobial property was evaluated by agar well diffusion method against some of the tested food borne, spoilage, pathogenic and skin disease causing microorganisms. Results: The DPPH free radical scavenging activity of acetone extract was better than that of standard ascorbic acid and superoxide anion scavenging activity of acetone extract was better than that of standard gallic acid. It showed good reducing capacity assessment also. Maximum phenol content was also present in acetone extract thus supporting the idea that phenolic content and antioxidant activity show a direct correlation. Acetone extract showed significant antimicrobial activity amongst all the different solvent extracts. Conclusion:Result presented here suggest that acetone extract of M. zapota leaves possess strong antioxidant and antimicrobial properties, and it may be considered as an interesting and economic source of antioxidants and antimicrobics for therapeutic or nutraceutical industries and for food manufactures or pharmaceuticals.

  1. The ultrasound assisted extraction of matrix elements and heavy metal fractions associated with Fe, Al and Mn oxyhydroxides from soil

    Directory of Open Access Journals (Sweden)

    Stanišić Svetlana M.

    2012-01-01

    Full Text Available The single agent extractions of major and trace metals from soil sample were conducted by means of rotary mixer and ultrasonic bath with sonication time of 10, 20, 30, 40 and 50 min. The sequential extraction according to the BCR scheme was undertaken. The obtained soil extracts were analyzed by ICP-OES and according to the results the rotary mixer assisted extraction was more efficient in the case of alkaline-earth elements. However, by the use of ultrasound several times higher amounts of matrix elements (Fe, Al and Mn and heavy metals predominantly associated with Fe, Al and Mn oxyhydroxides were extracted. The increase of the sonication time failed to improve extraction yields. The changes of the conductivity, pH, oxidoreduction potential, particle size diameter and zeta potential of colloid particles, with the sonication time increase were measured. The extraction mechanism and expressed selectivity of ultrasound is discussed and explanation is suggested.

  2. Rapid and simultaneous determination of neptunium and plutonium isotopes in environmental samples by extraction chromatography using sequential injection analysis and ICP-MS

    DEFF Research Database (Denmark)

    Qiao, Jixin; Hou, Xiaolin; Roos, Per;

    2010-01-01

    This paper reports an automated analytical method for rapid and simultaneous determination of plutonium isotopes (239Pu and 240Pu) and neptunium (237Np) in environmental samples. An extraction chromatographic column packed with TrisKem TEVA® resin was incorporated in a sequential injection (SI......) system for the isolation of plutonium and neptunium from matrix elements and interfering nuclides. Valence adjustment is a crucial step to ensure the same chemical behavior of plutonium and neptunium onto the TEVA column and consequently to accomplish their simultaneous separation and detection. Distinct...... procedures were investigated and compared for the adjustment of oxidation states of plutonium and neptunium to Pu(IV) and Np(IV), respectively. A two-step protocol using sulfite and concentrated nitric acid as redox reagents was proven to be the most effective method. The analytical results for both...

  3. Rapid Determination of Technetium-99 in Large Volume Seawater Samples Using Sequential Injection Extraction Chromatographic Separation and ICP-MS Measurement

    DEFF Research Database (Denmark)

    Shi, Keliang; Qiao, Jixin; Wu, Wangsuo;

    2012-01-01

    An automated method was developed for rapid determination of 99Tc in large volume seawater samples. The analytical procedure involves preconcentration of technetium with coprecipitation, online separation using extraction chromatography (two TEVA columns) implemented in a sequential injection setup...... also acidity (or concentration of H+) of the loading or eluting solution affect the adsorption and desorption of TcO4– on TEVA resin. Decontamination factors of more than 1 × 106 for ruthenium and 5 × 105 for molybdenum are achieved. Chemical yields of technetium in the overall procedure range from 60......% to 75% depending on the sample volumes, and a detection limit of 7.5 mBq/m3 (or 11.5 pg/m3) for 200 L of seawater was obtained. Compared with the conventional analytical procedure, the developed method significantly reduces analytical time. A batch of samples (n > 4) can be analyzed within 24 h. The...

  4. Sulphur K-edge XANES and acid volatile sulphide analyses of changes in chemical speciation of S and Fe during sequential extraction of trace metals in anoxic sludge from biogas reactors

    OpenAIRE

    Shakeri Yekta, Sepehr; Gustavsson, Jenny; Svensson, Bo H.; Skyllberg, Ulf

    2012-01-01

    The effect of sequential extraction of trace metals on sulphur (S) speciation in anoxic sludge samples from two lab-scale biogas reactors augmented with Fe was investigated. Analyses of sulphur K-edge X-ray absorption near edge structure (S XANES) spectroscopy and acid volatile sulphide (AVS) were conducted on the residues from each step of the sequential extraction. The S speciation in sludge samples after AVS analysis was also determined by S XANES. Sulphur was mainly present as FeS (~60% o...

  5. Mobility of arsenic, cadmium and zinc in a multi-element contaminated soil profile assessed by in-situ soil pore water sampling, column leaching and sequential extraction

    Energy Technology Data Exchange (ETDEWEB)

    Beesley, Luke, E-mail: l.beesley@2007.ljmu.ac.u [Faculty of Science, Liverpool John Moores University, Liverpool L3 3AF (United Kingdom); Moreno-Jimenez, Eduardo [Departamento de Quimica Agricola, Universidad Autonoma de Madrid, 28049 Madrid (Spain); Clemente, Rafael [Dep. of Soil and Water Conservation and Organic Waste Management, CEBAS-CSIC, Campus Universitario de Espinardo, PO Box 164, 30100 Espinardo, Murcia (Spain); Lepp, Nicholas; Dickinson, Nicholas [Faculty of Science, Liverpool John Moores University, Liverpool L3 3AF (United Kingdom)

    2010-01-15

    Three methods for predicting element mobility in soils have been applied to an iron-rich soil, contaminated with arsenic, cadmium and zinc. Soils were collected from 0 to 30 cm, 30 to 70 cm and 70 to 100 cm depths in the field and soil pore water was collected at different depths from an adjacent 100 cm deep trench. Sequential extraction and a column leaching test in the laboratory were compared to element concentrations in pore water sampled directly from the field. Arsenic showed low extractability, low leachability and occurred at low concentrations in pore water samples. Cadmium and zinc were more labile and present in higher concentrations in pore water, increasing with soil depth. Pore water sampling gave the best indication of short term element mobility when field conditions were taken into account, but further extraction and leaching procedures produced a fuller picture of element dynamics, revealing highly labile Cd deep in the soil profile. - Mobility of arsenic, cadmium and zinc in a polluted soil can be realistically interpreted by in-situ soil pore water sampling.

  6. Determination of polybrominated diphenyl ethers and polychlorinated biphenyls in fishery and aquaculture products using sequential solid phase extraction and large volume injection gas chromatography/tandem mass spectrometry.

    Science.gov (United States)

    Lu, Dasheng; Lin, Yuanjie; Feng, Chao; Wang, Dongli; Qiu, Xinlei; Jin, Yu'e; Xiong, Libei; Jin, Ying; Wang, Guoquan

    2014-01-15

    A new method was developed to determine polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in fishery and aquaculture products. Samples were extracted by an accelerated solvent extraction system and cleaned up by sequential solid phase extraction (SPE) including dispersive SPE (D-SPE) and tandem SPE. PBDEs and PCBs were analyzed by a large-volume injection gas chromatography triple quadrupole mass spectrometry (LVI-GC-QqQ-MS/MS). Good linearity (R(2)≥0.9958) was achieved. Method detection limits (MDLs) were 0.16-3.3pgg(-1) (wet weight, ww) for PBDEs and 0.13-0.97pgg(-1)ww for PCBs. Mean recoveries were 60-140% with relative standard deviations (RSDs) of less than 20% in weever fish, scallop and shrimp samples spiked at a lower level of 13-31pgg(-1)ww and a higher level of 50-125pgg(-1)ww. Certified reference materials were analyzed with acceptable results. The method reduced solvent consumption, analytical time and labor, and is suitable for the routine analysis of PBDEs and PCBs in fishery and aquaculture products. PMID:24321764

  7. Sequential leaching extraction of 239,240Pu, 238Pu, 241Pu and 241Am from a mud sample: An intercomparison study

    International Nuclear Information System (INIS)

    Full text: The determination of the association percentages of transuranics to different sediment phases could define their fate once they have been deposited onto the marine floor and their possible reactivity at the sediment/sea water interphase. Nowadays, there is a wide variety of leaching methods to extract transuranics from the different geochemical compounds conforming the sediments. Nevertheless, a general controversy is extended in the scientific world due to the extreme difficulty in testing their reliability, since the standards of transuranics linked to a certain sedimentary phase are not commercially available. Two mud subsamples taken from a storage container were analysed employing the same sequential extraction method, but with small handling differences.The following fractions were isolated: (1) Readily available (2) Carbonate bound and specifically adsorbed (3) Organically bound (4) Oxide and hydroxides bound and (5) residual. The 239,240Pu, 238Pu and 241Am extracted in each phase were analysed using standard radiochemical procedures. 241Pu was determined by both direct scintillation counting and through the 241Am in-growth up on the old disks containing Plutonium. The procedure for uncertainty calculations has been also included. (author)

  8. A sequential approach to control gas for the extraction of multi-gassy coal seams from traditional gas well drainage to mining-induced stress relief

    International Nuclear Information System (INIS)

    Highlights: • The gas reservoirs characteristics are measured and analyzed. • A sequential approach to control gas of multi-gassy coal seams is proposed. • The design of gas drainage wells has been improved. • The utilization ways of different concentrations of gas production are shown. - Abstract: As coal resources become exhausted in shallow mines, mining operations will inevitably progress from shallow depth to deep and gassy seams due to increased demands for more coal products. However, during the extraction process of deeper and gassier coal seams, new challenges to current gas control methods have emerged, these include the conflict between the coal mine safety and the economic benefits, the difficulties in reservoirs improvement, as well as the imbalance between pre-gas drainage, roadway development and coal mining. To solve these problems, a sequential approach is introduced in this paper. Three fundamental principles are proposed: the mining-induced stress relief effect of the first-mined coalbed should be sufficient to improve the permeability of the others; the coal resource of the first-mined seams must be abundant to guarantee the economic benefits; the arrangement of the vertical wells must fit the underground mining panel. Tunlan coal mine is taken as a typical example to demonstrate the effectiveness of this approach. The approach of integrating surface coalbed methane (CBM) exploitation with underground gas control technologies brings three major benefits: the improvement of underground coal mining safety, the implementation of CBM extraction, and the reduction of greenhouse gas emissions. This practice could be used as a valuable example for other coal mines having similar geological conditions

  9. Sequential extraction results in improved proteome profiling of medicinal plant Pinellia ternata tubers, which contain large amounts of high-abundance proteins.

    Directory of Open Access Journals (Sweden)

    Xiaolin Wu

    Full Text Available Pinellia ternata tuber is one of the well-known Chinese traditional medicines. In order to understand the pharmacological properties of tuber proteins, it is necessary to perform proteome analysis of P. ternata tubers. However, a few high-abundance proteins (HAPs, mainly mannose-binding lectin (agglutinin, exist in aggregates of various sizes in the tubers and seriously interfere with proteome profiling by two-dimensional electrophoresis (2-DE. Therefore, selective depletion of these HAPs is a prerequisite for enhanced proteome analysis of P. ternata tubers. Based on differential protein solubility, we developed a novel protocol involving two sequential extractions for depletion of some HAPs and prefractionation of tuber proteins prior to 2-DE. The first extraction using 10% acetic acid selectively extracted acid-soluble HAPs and the second extraction using the SDS-containing buffer extracted remaining acid-insoluble proteins. After application of the protocol, 2-DE profiles of P. ternata tuber proteins were greatly improved and more protein spots were detected, especially low-abundance proteins. Moreover, the subunit composition of P. ternata lectin was analyzed by electrophoresis. Native lectin consists of two hydrogen-bonded subunits (11 kDa and 25 kDa and the 11 kDa subunit was a glycoprotein. Subsequently, major HAPs in the tubers were analyzed by mass spectrometry, with nine protein spots being identified as lectin isoforms. The methodology was easy to perform and required no specialized apparatus. It would be useful for proteome analysis of other tuber plants of Araceae.

  10. BCR-ABL Promotes PTEN Downregulation in Chronic Myeloid Leukemia

    OpenAIRE

    Cristina Panuzzo; Sabrina Crivellaro; Giovanna Carrà; Angelo Guerrasio; Giuseppe Saglio; Alessandro Morotti

    2014-01-01

    Chronic myeloid leukemia (CML) is a myeloproliferative disorder characterized by the t(9;22) translocation coding for the chimeric protein p210 BCR-ABL. The tumor suppressor PTEN plays a critical role in the pathogenesis of CML chronic phase, through non genomic loss of function mechanisms, such as protein down-regulation and impaired nuclear/cytoplasmic shuttling. Here we demonstrate that BCR-ABL promotes PTEN downregulation through a MEK dependent pathway. Furthermore, we describe a novel n...

  11. A multisyringe flow-through sequential extraction system for on-line monitoring of orthophosphate in soils and sediments

    DEFF Research Database (Denmark)

    Buanuam, Janya; Miró, Manuel; Hansen, Elo Harald;

    2007-01-01

    of extracted organic phosphorus and condensed inorganic phosphates within the time frame of the assay. The potential of the novel system for accommodation of the harmonized protocol from the Standards, Measurement and Testing (SMT) Program of the Commission of the European Communities for inorganic...... phosphorus fractionation was also addressed. Under the optimized conditions, the lowest detectable concentration at the 3σ level was ≤ 0.02 mg P l-1 for both the HL and SMT schemes regardless of the extracting media. The repeatability of the MB assay was better than 2.5 % and the dynamic linear range...

  12. Sequential diffusion of ammonium and nitrate from soil extracts to a polytetrafluoroethylene trap for 15N determination

    International Nuclear Information System (INIS)

    A novel diffusion method was used for preparation of NH4+- and NO3--N samples from soil extracts for 15N determination. Ammonium, and nitrate following reduction to ammonia, are allowed to diffuse to an acid-wetted glass filter enclosed in polytetrafluoroethylene tape. The method was evaluated with simulated soil extracts obtained using 50 ml of 2 M potassium chloride solution containing 130 μg of NH4=-N (2.3 atom% 15N) and 120 μg of NO3--N (natural 15N abundance). No cross-over in the 15N abundances of NH4+-N and NO3--N was observed, indicating a quantitative diffusion process (72 h, 25 deg C). Owing to the presence of inorganic nitrogen impurities in the potassium chloride, the 15N enrichments should be corrected for the blank nitrogen content. (author). 8 refs.; 1 tab

  13. Improving selenium extraction by sequential enzymatic processes for Se-speciation of selenium-enriched Agaricus bisporus

    Energy Technology Data Exchange (ETDEWEB)

    Dernovics, M.; Stefanka, Z.; Fodor, P. [Department of Applied Chemistry, Faculty of Food Science, Szent Istvan University, Budapest (Hungary)

    2002-02-01

    Sample preparation methods based on the use of proteolytic and cell wall digesting enzymes for the speciation analysis of selenized mushroom were investigated. The sample (Agaricus bisporus; 160 {mu}g total Se per g sample) was grown on compost supplemented with selenized yeast. Experiments were carried out to elucidate the possible role of the cell wall digesting enzymes - Lysing enzyme and Driselase - in the improvement of extraction efficiency with and without inhibiting proteolysis during cell wall digestion. A 3-step procedure applying Lysing enzyme and pronase gave the highest extraction efficiency (89%); however, the best species recovery was achieved by a one-step proteolytic procedure. All the procedures of selenium speciation were controlled by independent ICP-AES analysis measuring the total amount of selenium. (orig.)

  14. Dynamic flow-through sequential extraction for assessment of fractional transformation and inter-element associations of arsenic in stabilized soil and sludge

    Energy Technology Data Exchange (ETDEWEB)

    Buanuam, Janya, E-mail: b_janya@hotmail.com [UFZ - Helmholtz Centre for Environmental Research, Department of Analytical Chemistry, Permoserstrasse 15, 04318 Leipzig (Germany); Wennrich, Rainer [UFZ - Helmholtz Centre for Environmental Research, Department of Analytical Chemistry, Permoserstrasse 15, 04318 Leipzig (Germany)

    2010-12-15

    A dynamic flow-through extraction system was applied for the first time to ascertain the fractional transformation and inter-element associations of arsenic in stabilized environmental solids, as exemplified by the partitioning of soil and sludge stabilized with three additives, namely MnO{sub 2}, Ca(OH){sub 2} and FeSO{sub 4}. The extraction system used not only gave fractionation data, but also the extraction profiles (extractograms) which were used for investigation of the breaking down of phases, kinetic releasing of As and elemental association between As and inorganic additives. Five geochemical fractions of As were elucidated by accommodation in the flow manifold of a modified Wenzel's sequential extraction scheme, well established for fractionation of arsenic. The results revealed that MnO{sub 2} and FeSO{sub 4} have a slight effect on As phase transformation for soil and sludge samples amended for one week whereas the addition of Ca(OH){sub 2} increases As mobility due to the desorption of As from the solid Fe-oxides phase. The significant change in fractional transformation after 8 weeks of incubation can be seen in MnO{sub 2}-treated soil. There was an increase of 17% in the non-mobilizable As fraction in MnO{sub 2}-treated soil. From extractograms, arsenic in untreated soil was found to be rapidly leached and concurrently released with Fe. This may be evidence that the release of As is dependent on the dissolution of amorphous Fe oxides. In MnO{sub 2}-treated soil, a strong affinity was observed between Mn and As in the amorphous Fe/Al oxides fraction, and this plays an important role in slowing down the kinetics of As releasing.

  15. Dynamic flow-through sequential extraction for assessment of fractional transformation and inter-element associations of arsenic in stabilized soil and sludge

    International Nuclear Information System (INIS)

    A dynamic flow-through extraction system was applied for the first time to ascertain the fractional transformation and inter-element associations of arsenic in stabilized environmental solids, as exemplified by the partitioning of soil and sludge stabilized with three additives, namely MnO2, Ca(OH)2 and FeSO4. The extraction system used not only gave fractionation data, but also the extraction profiles (extractograms) which were used for investigation of the breaking down of phases, kinetic releasing of As and elemental association between As and inorganic additives. Five geochemical fractions of As were elucidated by accommodation in the flow manifold of a modified Wenzel's sequential extraction scheme, well established for fractionation of arsenic. The results revealed that MnO2 and FeSO4 have a slight effect on As phase transformation for soil and sludge samples amended for one week whereas the addition of Ca(OH)2 increases As mobility due to the desorption of As from the solid Fe-oxides phase. The significant change in fractional transformation after 8 weeks of incubation can be seen in MnO2-treated soil. There was an increase of 17% in the non-mobilizable As fraction in MnO2-treated soil. From extractograms, arsenic in untreated soil was found to be rapidly leached and concurrently released with Fe. This may be evidence that the release of As is dependent on the dissolution of amorphous Fe oxides. In MnO2-treated soil, a strong affinity was observed between Mn and As in the amorphous Fe/Al oxides fraction, and this plays an important role in slowing down the kinetics of As releasing.

  16. Comparison of first pass bolus AIFs extracted from sequential {sup 18}F-FDG PET and DSC-MRI of mice

    Energy Technology Data Exchange (ETDEWEB)

    Evans, Eleanor, E-mail: ee244@cam.ac.uk [Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0QQ (United Kingdom); Sawiak, Stephen J. [Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0QQ (United Kingdom); Behavioural and Clinical Neuroscience Institute, Department of Experimental Psychology, University of Cambridge, Cambridge, CB2 3EB (United Kingdom); Ward, Alexander O.; Buonincontri, Guido; Hawkes, Robert C.; Adrian Carpenter, T. [Wolfson Brain Imaging Centre, Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0QQ (United Kingdom)

    2014-01-11

    Accurate kinetic modelling of in vivo physiological function using positron emission tomography (PET) requires determination of the tracer time–activity curve in plasma, known as the arterial input function (AIF). The AIF is usually determined by invasive blood sampling methods, which are prohibitive in murine studies due to low total blood volumes. Extracting AIFs from PET images is also challenging due to large partial volume effects (PVE). We hypothesise that in combined PET with magnetic resonance imaging (PET/MR), a co-injected bolus of MR contrast agent and PET ligand can be tracked using fast MR acquisitions. This protocol would allow extraction of a MR AIF from MR contrast agent concentration–time curves, at higher spatial and temporal resolution than an image-derived PET AIF. A conversion factor could then be applied to the MR AIF for use in PET kinetic analysis. This work has compared AIFs obtained from sequential DSC-MRI and PET with separate injections of gadolinium contrast agent and {sup 18}F-FDG respectively to ascertain the technique′s validity. An automated voxel selection algorithm was employed to improve MR AIF reproducibility. We found that MR and PET AIFs displayed similar character in the first pass, confirmed by gamma variate fits (p<0.02). MR AIFs displayed reduced PVE compared to PET AIFs, indicating their potential use in PET/MR studies.

  17. Iodine speciation in coastal and inland bathing waters and seaweeds extracts using a sequential injection standard addition flow-batch method.

    Science.gov (United States)

    Santos, Inês C; Mesquita, Raquel B R; Bordalo, Adriano A; Rangel, António O S S

    2015-02-01

    The present work describes the development of a sequential injection standard addition method for iodine speciation in bathing waters and seaweeds extracts without prior sample treatment. Iodine speciation was obtained by assessing the iodide and iodate content, the two inorganic forms of iodine in waters. For the determination of iodide, an iodide ion selective electrode (ISE) was used. The indirect determination of iodate was based on the spectrophotometric determination of nitrite (Griess reaction). For the iodate measurement, a mixing chamber was employed (flow batch approach) to explore the inherent efficient mixing, essential for the indirect determination of iodate. The application of the standard addition method enabled detection limits of 0.14 µM for iodide and 0.02 µM for iodate, together with the direct introduction of the target water samples, coastal and inland bathing waters. The results obtained were in agreement with those obtained by ICP-MS and a colorimetric reference procedure. Recovery tests also confirmed the accuracy of the developed method which was effectively applied to bathing waters and seaweed extracts. PMID:25435219

  18. Three-way multivariate analysis of metal fractionation results from sediment samples obtained by different sequential extraction procedures and ICP-OES

    International Nuclear Information System (INIS)

    Three typical schemes for metal fractionation were applied to analyse coastal surface sediment samples from Bahia Blanca estuary, where an important industrial emplacement is located. Also, three certified reference materials for total metal concentrations were analysed. The studied metals were cadmium, chromium, copper, lead and zinc because of their hazardous potential and related abundance in the estuary. The concentration of metals was determined by inductively coupled plasma-optical emission spectrometry (ICP-OES). A three-way multivariate analysis was performed in order to obtain a better visualization of the experimental data. The extracted information was used to evaluate the equivalence among the results obtained by the three sequential extraction schemes. The data were analysed by parallel factor analysis (PARAFAC). PARAFAC models with two factors describe appropriately the data sets (explained variance about 54% and core consistency of 100%). The multivariate decomposition showed that the three applied schemes are able to describe equally well the behaviour of the metals in the different sediment fractions

  19. Liquid-liquid extraction separation and sequential determination of plutonium and americium in environmental samples by alpha-spectrometry

    International Nuclear Information System (INIS)

    A procedure is described by which plutonium and americium can be determined in environmental samples. The sample is leached with nitric acid and hydrogen peroxide, and the two elements are co-precipitated with ferric hydroxide and calcium oxalate. The calcium oxalate is incinerated at 4500 and the ash is dissolved in nitric acid. Plutonium is extracted with tri-n-octylamine solution in xylene from 4M nitric acid and stripped with ammonium iodide/hydrochloric acid. Americium is extracted with thenoyltrifluoroacetone solution in xylene at pH 4 together with rare-earth elements and stripped with 1M nitric acid. Americium and the rare-earth elements thus separated are sorbed on Dowex 1 x 4 resin from 1M nitric acid in 93% methanol, the rare-earth elements are eluted with 0.1M hydrochloric acid/0.5M ammonium thiocyanate/80% methanol and the americium is finally eluted with 1.5M hydrochloric acid in 86% methanol. Plutonium and americium in each fraction are electro-deposited and determined by alpha-spectrometry. Overall average recoveries are 81% for plutonium and 59% for americium. (author)

  20. Sequential analysis

    CERN Document Server

    Wald, Abraham

    2013-01-01

    In 1943, while in charge of Columbia University's Statistical Research Group, Abraham Wald devised Sequential Design, an innovative statistical inference system. Because the decision to terminate an experiment is not predetermined, sequential analysis can arrive at a decision much sooner and with substantially fewer observations than equally reliable test procedures based on a predetermined number of observations. The system's immense value was immediately recognized, and its use was restricted to wartime research and procedures. In 1945, it was released to the public and has since revolutio

  1. Extractability and bioavailability of Pb and As in historically contaminated orchard soil: Effects of compost amendments

    International Nuclear Information System (INIS)

    The availability of Pb and As in an historically contaminated orchard soil, after amendment with compost and aging in the field, was determined by single-step chemical extraction with 1.0 M ammonium acetate at pH 4.8, sequential extraction using the modified BCR test, and a redworm bioassay in the laboratory. The efficiency of soil Pb extraction by ammonium acetate was greater at higher total soil Pb but was reduced by compost amendment. Conversely, the extraction efficiency of total soil As increased with compost amendment, but was not sensitive to total soil As. The redworm bioassay indicated Pb (but not As) bioavailability to be reduced by soil amendment with compost, a result consistent with the ammonium acetate extraction test but not reflected in modified BCR test. Electron microprobe studies of the orchard soil revealed Pb and As to be spatially associated in discrete particles along with phosphorus and iron. -- Highlights: ► Soil Pb and As in an old orchard were concentrated in discrete particles. ► Compost amendment of contaminated soil reduced Pb bioavailability. ► Compost amendment of contaminated soil did not reduce As bioavailability. ► Ammonium acetate extraction test reflected bioavailability of soil Pb and As. -- Remediating metal-contaminated orchard soils with compost reduced lead bioavailability but had little effect on arsenic

  2. Sequential separation of actinides and lanthanides by extraction chromatography using a CMPO-TBP/XAD7 column

    International Nuclear Information System (INIS)

    CMPO/TBP sorbed on Amberlite XAD7 resin was used for the separation of actinides and lanthanides from nitric acid solutions by extraction chromatography. The distribution ratios of actinides and lanthanide fission products (Ce, Eu) as a function of acid concentration and some complexing agents were determined. In strong HNO3 medium (> 1 mol/l) the tri-, tetra- and hexavalent actinides as well as the lanthanides have shown great affinity for the CMPO/TBP/XAD7 sorbent. The same behavior was found in HCl medium except for trivalent actinides and lanthanides which show lower distribution values in the same acid range. The effect of some complexing agents as DTPA and ammonium oxalate were also investigated. In DTPA only hexavalent actinides showed higher distribution value. On the basis of these differences, an alternative procedure for actinide-lanthanide separation and actinides from each other is proposed. (author)

  3. BCR-ABL DERIVED PEPTIDE VACCINES FOR CHRONIC MYELOID LEUKAEMIA

    Directory of Open Access Journals (Sweden)

    M. Bocchia

    2012-01-01

    Full Text Available Chronic Myeloid Leukemia (CML is a myeloproliferative pluripotent stem cell disorder characterized by the presence of a cytogenetic hallmark, the Philadelphia (Ph chromosome, and accounts for 15% of adult leukemias. The disease progresses from a chronic phase through an accelerated phase to a blast phase and its natural course accounts for a median 4 years survival1. The Ph chromosome is derived by a reciprocal translocation termed t(9;22 in which the c-abl oncogene has moved from chromosome 9 into the breakpoint cluster region (bcr, within the bcr gene on chromosome 22, resulting in a chimeric bcr-abl fusion gene that encodes a 210 KD protein (p210 with constitutive tyrosine kinase activity. Two major alternative chimeric p210 can result from this fusion gene: p210-b2a2 where the junction occurs between bcr exon 2 (b2 and abl exon 2 (a2 and p210-b3a2 where the the junction occurs between bcr exon 3 (b3 and abl exon 2 (a2. About 40% of CML patients harbor the p210-b2a2 and about 60% of them show the p210-b3a2.

  4. Determination of endogenous brassinosteroids using sequential magnetic solid phase extraction followed by in situ derivatization/desorption method coupled with liquid chromatography-tandem mass spectrometry.

    Science.gov (United States)

    Ding, Jun; Mao, Li-Jing; Guo, Ning; Yu, Lei; Feng, Yu-Qi

    2016-05-13

    In this study, a sequential magnetic solid phase extraction followed by in situ derivatization/desorption method was proposed for the fast, selective and sensitive determination of brassinosteroids (BRs) in plant tissues. Magnetic sorbent for quick, easy, cheap, effective, rugged and safe method (mQuEChERS) and polymer(4-vinylphenylboronic acid-co-ethylene glycol dimethacrylate) coated Fe3O4@SiO2 (p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2) were prepared and characterized. Using them as sorbents, pigments and hydrophilic interferents were firstly removed from plant extract by mQuEChERS, and then endogenous BRs were selectively enriched by p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2 through boronate affinity interaction. After loading BRs on p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2, instead of directly eluting free BRs, the adsorbed BRs were released by adding 4-(N,N-dimethyamino)phenylboronic acid (4-DMAPBA) solution for in situ derivatizaiton/desorption of BRs based on a transesterification reaction between the boronate moieties of p(4-VPBA-co-EGDMA) coated Fe3O4@SiO2 and 4-DMAPBA, finally the resultant solution was submitted to LC-MS/MS for quantification. The whole procedure of the sequential MSPE could be accomplished within 1h, and the matrix effect to MS signal after the sample pretreatment was estimated to be in the range of 93.0-97.4%. The established method provided broad linear dynamics ranges (1.0-100.0pg/mL) with correlation coefficients (R) >0.9978, substantial sensitivity (limits of detection ranged from 0.27 to 1.29pg/mL), high reproducibility (intra-day and inter-day relative standard deviations (RSDs) less than 14.8%) and satisfactory accuracy (recoveries ranged from 74.0%-116.6%). Furthermore, endogenous BRs were successfully detected in one flower of Brassica napus L. (22.5-542.7pg/g fresh weight) and other plant tissues (13.7-289.8pg/g fresh weight). PMID:27072523

  5. Hybrid sequential treatment of aromatic hydrocarbon-polluted effluents using non-ionic surfactants as solubilizers and extractants.

    Science.gov (United States)

    Álvarez, M S; Moscoso, F; Rodríguez, A; Sanromán, M A; Deive, F J

    2014-06-01

    A treatment train combining a biological and a physical approach was investigated for the first time in order to remediate polycyclic aromatic hydrocarbons (PAHs)-polluted effluents. Given the hydrophobic nature of these contaminants, the presence of non-ionic surfactants is compulsory to allow their bioavailability. The presence of these surfactants also entails an advantage in order to ease contaminant removal by the formation of aqueous two-phase systems (ATPS). The segregation ability of environmentally benign salts such as potassium tartrate, citrate, and oxalate was discussed for extracting phenanthrene (PHE), pyrene (PYR), and benzo[a]anthracene (BaA). The biological remediation efficiency reached circa 60% for PHE and PYR, and more than 80% for BaA. The coupling of ATPS subsequent stage by using potassium citrate allowed increasing the total PAH remediation yields higher than 97% of PAH removal. The viability of the proposed solution was investigated at industrial scale by using the software tool SuperPro Designer. PMID:24759641

  6. Sequential extraction and compositional analysis of oil-bearing fluid inclusions in reservoir rocks from Kuche Depression, Tarim Basin

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The free oils, adsorbed oils and oil-bearing fluid inclusions have been extracted separately and analyzed by GC and GC-MS in reservoir rock samples collected from the Kuche Depression. The results demonstrate that the molecular compositions of oil-bearing fluid inclusions are significantly different from those of the free oils (the current oils). Compared with the current oil, the oil-bearing fluid inclusions are characterized by relatively high values of parameters Pr/nC17and Ph/nC18, low values of Pr/Ph, hopanes/steranes, C30-diahopane/C30-hopane and Ts/Tm, low content of C29Ts terpane and high maturities as indicated by C29 steranes 20S/(20R+20S). In addition, the oil-bearing fluid inclusions correlate very well with the oils in northern and central Tarim Basin, which were derived from Cambrian-Ordovician marine source rocks. The adsorbedoils appear to be an intermediate type between free oils and oil-bearing fluid inclusions. The above analytical data indicate that there are at least two oil-charging episodes for these reservoir rock samples. The early charging oils were derived from Cambrian-Ordovician marine source rocks, and the later charging oils, from Triassic-Jurassic terrestrial source rocks. The primary marine oils were overwhelmingly diluted by the following terrestrial oils.

  7. Understanding the remobilization of copper, zinc, cadmium and lead due to ageing through sequential extraction and isotopic exchangeability.

    Science.gov (United States)

    Kumar, Manish

    2016-06-01

    Artificial infiltration facilities (AIFs) are useful to control urban runoff and regulate combined sewer overflows. Over the years, AIFs accumulate significant amounts of soakaway sediments and organic matter. The prolonged retention of soakaway sediments in AIFs is likely to cause metal remobilization due to ageing processes. The measurement of the individual consequence of ageing demands homogeneity in physical and chemical profiles of samples. This leads to assessment of metal remobilization in a single soil core through solid-phase extractions and isotopic exchangeability (E value). Depth-wise variation in the physicochemical properties and metal content of the underlying soil (below 1 m of AIFs) was created through 2 weeks of continuous leaching with artificial road runoff (ARR). Ten samples obtained from a 50-cm core by sectioning it at 5-cm intervals were subsequently incubated for 18 months. The results suggest that degradation of organic matter and changes in functional groups due to ageing govern metal remobilization. In general, the top segment showed significant alteration due to ageing. Post incubation, Zn increased dramatically in contrast to subdued Cu and Pb levels in exchangeable fractions with concomitant rise in organic-bound fractions. Isotopic exchangeability of Cd and Zn showed pronounced effect of ageing, although the effect of ageing was distinct in chemical partitioning and isotopic exchangeability of metals; a comparative study of short-term versus long-term incubation will benefit assessment of initial dynamics and final equilibrium. Consequently, the outcome from this work is a viable tool in risk prediction related to soakaway sediment accumulation in AIF. PMID:27236447

  8. Evolution of phosphorus complexation and mineralogy during (hydro)thermal treatments of activated and anaerobically digested sludge: Insights from sequential extraction and P K-edge XANES.

    Science.gov (United States)

    Huang, Rixiang; Tang, Yuanzhi

    2016-09-01

    (Hydro)thermal treatments of sewage sludge is a promising option that can simultaneously target safe waste disposal, energy recovery, and nutrient recovery/recycling. The speciation of phosphorus (P) in sludge is of great relevance to P reclamation/recycling and soil application of sludge-derived products, thus it is critical to understand the effects of different treatment techniques and conditions on P speciation. This study systematically characterized P speciation (i.e. complexation and mineral forms) in chars derived from pyrolysis and hydrothermal carbonization (HTC) of municipal sewage sludges. Combined sequential extraction and P K-edge X-ray absorption near edge structure (XANES) spectroscopy analysis revealed the dependence of P transformation on treatment conditions and metal composition in the feedstocks. Pyrolysis of sludges decreased the relative abundance of phytic acid while increased the abundance of Al-associated P. HTC thoroughly homogenized and exposed P for interaction with various metals/minerals, with the final P speciation closely related to the composition/speciation of metals and their affinities to P. Results from this study revealed the mechanisms of P transformation during (hydro)thermal treatments of sewage sludges, and might be applicable to other biosolids. It also provided fundamental knowledge basis for the design and selection of waste management strategies for better P (re)cycling and reclamation. PMID:27232988

  9. Immobilization of Pb, Cd, and Zn in a contaminated soil using eggshell and banana stem amendments: metal leachability and a sequential extraction study.

    Science.gov (United States)

    Ashrafi, Mehrnaz; Mohamad, Sharifah; Yusoff, Ismail; Shahul Hamid, Fauziah

    2015-01-01

    Heavy-metal-contaminated soil is one of the major environmental pollution issues all over the world. In this study, two low-cost amendments, inorganic eggshell and organic banana stem, were applied to slightly alkaline soil for the purpose of in situ immobilization of Pb, Cd, and Zn. The artificially metal-contaminated soil was treated with 5% eggshell or 10% banana stem. To simulate the rainfall conditions, a metal leaching experiment for a period of 12 weeks was designed, and the total concentrations of the metals in the leachates were determined every 2 weeks. The results from the metal leaching analysis revealed that eggshell amendment generally reduced the concentrations of Pb, Cd, and Zn in the leachates, whereas banana stem amendment was effective only on the reduction of Cd concentration in the leachates. A sequential extraction analysis was carried out at the end of the experiment to find out the speciation of the heavy metals in the amended soils. Eggshell amendment notably decreased mobility of Pb, Cd, and Zn in the soil by transforming their readily available forms to less accessible fractions. Banana stem amendment also reduced exchangeable form of Cd and increased its residual form in the soil. PMID:25060308

  10. Assessment on the stability of radiocesium in sludge from a water purification plant by a leachate test and a sequential extraction test

    International Nuclear Information System (INIS)

    Radiocesium released by the Fukushima Daiichi nuclear power plant accident fell in mountainous areas located in northern and western regions of Gunma Prefecture. Therefore, several research groups measured the radiocesium in the sediments in lakes and rivers, as well as soils around rivers, lakes and mountains. In this study, we investigated not only the concentration of radiocesium contained in wasted-sludge samples from a water purification plant, but also the leachate behaviors from the sludge to water. As results, the concentrations of radiocesium in wasted-sludge samples collected from a water purification plant at Kiryu Bureau of Waterworks on 2013 were obviously lower than that on 2011. Additionally, the degrees of radiocesium concentrations were related to those of turbidities in raw water of the water supply. Through leachate tests of radiocesium using aqueous solutions adjusted from pH 2 to pH 10, the risk leaching from wasted-sludge to water was considered to be low without any regard to the pH values of the solutions. Furthermore, the chemical forms of radiocesium in the sludge by a sequential extraction method were expected to mainly exist as residue and oxide forms, which are classified as fractions hardly eluted in nature. (author)

  11. Application of Short Sequential Extraction Procedure(SSEP) for the Determination of Zn, Cu, and Cd Contents in Riverbed Sludge in Hejiagou, Harbin, China

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A short sequential extraction procedure(SSEP) was applied to the determination of more readily available metal fractions of Zn, Cu, and Cd in the riverbed sludge in Hejiagou, Harbin, China. From the results, a potential order of metal availability in seven sludge samples was proposed: Cd<Cu<Zn, and samples S1,S2, and S4 were used for the determination of total Zn content, and sample S3 used for the determination of total Cu content in the mobile and the mobilizable fractions showed the highest pollution risk. The results with regard to metal mobility in sludge samples were confirmed by the individual and global contamination factors that were calculated from the nonresidual and resi-dual metal contents. The results obtained from metal-release experiments after exposure of sludge to environmental conditions agreed well with those obtained from both SSEP and the individual and global contamination factors, indicating that the maximum metal release could be an additional factor to evaluate the heavy metal availability in contaminated sludge. A substantial time saving was achieved by using the metal-release method in the present study.

  12. Rapid determination of plutonium isotopes in environmental samples using sequential injection extraction chromatography and detection by inductively coupled plasma mass spectrometry.

    Science.gov (United States)

    Qiao, Jixin; Hou, Xiaolin; Roos, Per; Miró, Manuel

    2009-10-01

    This article presents an automated method for the rapid determination of 239Pu and 240Pu in various environmental samples. The analytical method involves the in-line separation of Pu isotopes using extraction chromatography (TEVA) implemented in a sequential injection (SI) network followed by detection of isolated analytes with inductively coupled plasma mass spectrometry (ICP-MS). The method has been devised for the determination of Pu isotopes at environmentally relevant concentrations, whereby it has been successfully applied to the analyses of large volumes/amounts of samples, for example, 100-200 g of soil and sediment, 20 g of seaweed, and 200 L of seawater following analyte preconcentration. The investigation of the separation capability of the assembled SI system revealed that up to 200 g of soil or sediment can be treated using a column containing about 0.70 g of TEVA resin. The analytical results of Pu isotopes in the reference materials showed good agreement with the certified or reference values at the 0.05 significance level. Chemical yields of Pu ranged from 80 to 105%, and the decontamination factors for uranium, thorium, mercury and lead were all above 10(4). The duration of the in-line extraction chromatographic run was <1.5 h, and the proposed setup was able to handle up to 20 samples (14 mL each) in a fully automated mode using a single chromatographic column. The SI manifold is thus suitable for rapid and automated determination of Pu isotopes in environmental risk assessment and emergency preparedness scenarios. PMID:19722516

  13. INHIBITION OF APOPTOSIS BY bcr-abl FUSION GENE IN K562 CELLS

    Institute of Scientific and Technical Information of China (English)

    WANG Chun-hong; SUN Bing-zhong; YUAN Yue-chuan

    1999-01-01

    Objective: To investigate the effect of bcr-abl fusion gene on CML cell apoptosis. Methods: Apoptosis of exvivo cultured K562 cells were observed after exposure to synthetic 18 mer antisense oligodeoxynucleotide complementary to the bcr-abl junction (b3a2). Results: Apoptosis of K562 cells was significantly increased associated with inhibition of bcr-abl expression. Conclusion: bcr-abl fusion gene formation due to chromosome translocation may be the major mechanism of CML via inhibition of apoptosis.

  14. Imatinib-dependent tyrosine phosphorylation profiling of Bcr-Abl-positive chronic myeloid leukemia cells

    OpenAIRE

    Preisinger, C.; Schwarz, J. P.; Bleijerveld, O.B.; et al

    2012-01-01

    Bcr-Abl is the major cause and pathogenetic principle of chronic myeloid leukemia (CML). Bcr-Abl results from a chromosomal translocation that fuses the bcr and abl genes, thereby generating a constitutively active tyrosine kinase, which stimulates several signaling networks required for proliferation and survival. peer-reviewed

  15. Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation

    DEFF Research Database (Denmark)

    Satpathy, Shankha; Wagner, Sebastian A; Beli, Petra; Gupta, Rajat; Kristiansen, Trine A; Malinova, Dessislava; Francavilla, Chiara; Tolar, Pavel; Bishop, Gail A; Hostager, Bruce S; Choudhary, Chuna Ram

    2015-01-01

    ubiquitylation of the receptor-proximal signaling components, many of which are co-regulated by both the modifications. We illustrate the power of multilayered proteomic analyses for discovering novel BCR signaling components by demonstrating that BCR-induced phosphorylation of RAB7A at S72 prevents its...... provided datasets can serve as a valuable resource for further understanding BCR signaling networks....

  16. Mining Heterogeneous Multidimensional Sequential Patterns

    OpenAIRE

    Egho, Elias; Raïssi, Chedy; Jay, Nicolas; Napoli, Amedeo

    2014-01-01

    All domains of science and technology produce large and heterogeneous data. Although much work has been done in this area, mining such data is still a challenge. No previous research targets the mining of heterogeneous multidimensional sequential data. In this work, we present a new approach to extract heterogeneous multidimensional sequential patterns with different levels of granularity by relying on external taxonomies. We show the efficiency and interest of our approach with the analysis ...

  17. Fractional determination of some metallic elements including rate earth elements, thorium and uranium in agricultural soil by a sequential extraction procedure

    International Nuclear Information System (INIS)

    In order to investigate the behavior and distribution of metallic elements including rare earth elements(REEs), thorium(Th) and uranium(U) in the agricultural field, these elements in agricultural soils were partitioned into 6 fractions by a sequential extraction procedure: water soluble(F1), exchangeable(F2), bound to inorganic matter(F3), bound to organic matter(F4), bound to free oxides(F5) and residual(F6) fractions, and determined for each fraction as well as for total amount. Soil samples were collected from the agricultural field (paddy and upland field) and non-agricultural field in Sakata City (from 2005 to 2010) and Murayama City (from 2008 to 2010) in Yamagata Prefecture, and Sekikawa Village, Iwafune District (from 2007 to 2010) in Niigata Prefecture. Consequently, the following matters have been mainly clarified. (1) The distribution proportion of metallic elements among six fractions of the soils are varied depending on elements and soil utilization(i.e., paddy, upland or no plow). Among REEs, the tendency that the proportion of F5 of heavy-REE(HREE) is generally larger than that of light-REE(LREE) or in middle-REE(MREE) can be found. (2) The differences of REEs concentrations(or REE pattern) of soils are observed among sampling points. It can be related to the nature of soil including the content of Fe-Mn oxides or organic carbon (i.e., the affinity for free oxides or organic matter). (3) The distribution proportion as well as total concentrations of metallic elements in soils are not greatly varied regardless of sampling period(i.e., spring or autumn). (author)

  18. Ultrasonographic Observation of the Breast in Early Postmenopausal Women during Therapy with Cimicifuga Foetida Extract and Sequential Therapy with Estrogen and Progestin

    Institute of Scientific and Technical Information of China (English)

    Sharen Gaowa; Ai-Jun Sun; Ying Jiang; Fa-Wei He; Ting-Ping Zheng; Ya-Ping Wang

    2015-01-01

    Background:It is now recognized that Cimicifugafoetida (C.foetida) extract is effective in alleviating menopausal symptoms.But the durations reported were usually short.The aim of this study was to investigate the effects of C.foetida extract therapy and different estrogen and progesterone sequential therapies,on the breasts of early postmenopausal women.Methods:This was a prospective randomized trial.Ninety-six early menopausal women were recruited and randomly assigned into three groups treated with different therapies for 2 years.Patients were given C.foetida extract in Group A,estradiol valerate and medroxyprogesterone acetate in Group B,and estradiol valerate and progesterone in Group C.Ultrasonography was used to monitor changes in breast during treatment.Results:In comparing breast glandular section thickness before and after 1 and 2 years of treatment,no significant difference was observed in Group A (11.97 ± 2.84 mm vs.12.09 ± 2.58 mm and 12.61 ± 3.73 mm,P > 0.05);in Group B glandular section thickness had increased significantly (10.98 ± 2.34 mm vs.11.84 ± 2.72 mm and 11.90 ± 3.33 mm,P < 0.05) after treatment,the same as Group C (11.56 ± 3.03 mm vs.12.5 ± 3.57 mm and 12.22 ± 4.39 mm P < 0.05).In comparing breast duct width before and after 1 and 2 years of treatment,no significant difference was seen in Group A (1.07 ± 0.19 mm vs.1.02 ± 0.18 mm and 0.98 ± 0.21 mm,P > 0.05);in Group B the duct width had a downward trend after treatment (0.99 ± 0.14 mm vs.0.96 ± 0.22 mm and 0.90 ± 0.18 mm,P < 0.05),the same as Group C (1.07 ± 0.20mm vs.1.02 ± 0.17 mm and 0.91 ± 0.19 mm,P < 0.05).The nodules detected before treatment had disappeared after 1-year of treatment or exhibited no distinct changes in the three groups.However,new breast nodules had appeared after 2 years of treatment:There was one case in Group A,two cases in Group B and four cases in Group C,with breast hyperplasia after the molybdenum target check.Conclusions:In early

  19. BCR and its mutants, the reciprocal t(9;22)-associated ABL/BCR fusion proteins, differentially regulate the cytoskeleton and cell motility

    International Nuclear Information System (INIS)

    The reciprocal (9;22) translocation fuses the bcr (breakpoint cluster region) gene on chromosome 22 to the abl (Abelson-leukemia-virus) gene on chromosome 9. Depending on the breakpoint on chromosome 22 (the Philadelphia chromosome – Ph+) the derivative 9+ encodes either the p40(ABL/BCR) fusion transcript, detectable in about 65% patients suffering from chronic myeloid leukemia, or the p96(ABL/BCR) fusion transcript, detectable in 100% of Ph+ acute lymphatic leukemia patients. The ABL/BCRs are N-terminally truncated BCR mutants. The fact that BCR contains Rho-GEF and Rac-GAP functions strongly suggest an important role in cytoskeleton modeling by regulating the activity of Rho-like GTPases, such as Rho, Rac and cdc42. We, therefore, compared the function of the ABL/BCR proteins with that of wild-type BCR. We investigated the effects of BCR and ABL/BCRs i.) on the activation status of Rho, Rac and cdc42 in GTPase-activation assays; ii.) on the actin cytoskeleton by direct immunofluorescence; and iii) on cell motility by studying migration into a three-dimensional stroma spheroid model, adhesion on an endothelial cell layer under shear stress in a flow chamber model, and chemotaxis and endothelial transmigration in a transwell model with an SDF-1α gradient. Here we show that both ABL/BCRs lost fundamental functional features of BCR regarding the regulation of small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells. Our data presented here describe for the first time an analysis of the biological function of the reciprocal t(9;22) ABL/BCR fusion proteins in comparison to their physiological counterpart BCR

  20. BCR and its mutants, the reciprocal t(9;22-associated ABL/BCR fusion proteins, differentially regulate the cytoskeleton and cell motility

    Directory of Open Access Journals (Sweden)

    Puccetti Elena

    2006-11-01

    Full Text Available Abstract Background The reciprocal (9;22 translocation fuses the bcr (breakpoint cluster region gene on chromosome 22 to the abl (Abelson-leukemia-virus gene on chromosome 9. Depending on the breakpoint on chromosome 22 (the Philadelphia chromosome – Ph+ the derivative 9+ encodes either the p40(ABL/BCR fusion transcript, detectable in about 65% patients suffering from chronic myeloid leukemia, or the p96(ABL/BCR fusion transcript, detectable in 100% of Ph+ acute lymphatic leukemia patients. The ABL/BCRs are N-terminally truncated BCR mutants. The fact that BCR contains Rho-GEF and Rac-GAP functions strongly suggest an important role in cytoskeleton modeling by regulating the activity of Rho-like GTPases, such as Rho, Rac and cdc42. We, therefore, compared the function of the ABL/BCR proteins with that of wild-type BCR. Methods We investigated the effects of BCR and ABL/BCRs i. on the activation status of Rho, Rac and cdc42 in GTPase-activation assays; ii. on the actin cytoskeleton by direct immunofluorescence; and iii on cell motility by studying migration into a three-dimensional stroma spheroid model, adhesion on an endothelial cell layer under shear stress in a flow chamber model, and chemotaxis and endothelial transmigration in a transwell model with an SDF-1α gradient. Results Here we show that both ABL/BCRs lost fundamental functional features of BCR regarding the regulation of small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells. Conclusion Our data presented here describe for the first time an analysis of the biological function of the reciprocal t(9;22 ABL/BCR fusion proteins in comparison to their physiological counterpart BCR.

  1. Redistribution of Pb, Zn and Cu Fractions in Tailing Soils Treated with Different Extractants

    Institute of Scientific and Technical Information of China (English)

    LIU Yun-Guo; WANG Xian-Hai; ZENG Guang-Ming; LI Xin; ZHOU Chun-Hua; FAN Ting; LI Yong-Li; YUAN Xin-Zhong

    2006-01-01

    The efficiency of EDTA, HNO3 and CaCl2 as extractants to remove Pb, Zn and Cufrom tailing soils without varying soil pH was investigated with distributions of Pb, Zn and Cu being determined before and after extraction using the sequential extraction procedure of the optimized European Community Bureau of Reference (BCR). Results indicated that EDTA and HNO3 were both effective extracting agents. The extractability of extractants for Pb and Zn was in the order EDTA > HNO3 > CaCl2, while for Cu it was HNO3 > EDTA > CaCl2. After EDTA extraction, the proportion of Pb, Zn and Cu in the four fractions varied greatly, which was related to the strong extraction and complexation ability. Before and after extraction with HNO3 and CaCl2, the percentages of Pb, Zn and Cu in the reducible, oxidizable and residual fractions changed little compared to the acid-extractable fraction. The lability of metal in the soil andthe kinds of extractants were the factors controlling the effects of metal extraction.

  2. Evolution of biogeochemical cycling of phosphorus during 45~50 Ma revealed by sequential extraction analysis of IODP Expedition 302 cores from the Arctic Ocean

    Science.gov (United States)

    Hashimoto, S.; Yamaguchi, K. E.; Takahashi, K.

    2012-12-01

    The modern Arctic Ocean plays crucial roles in controlling global climate system with the driving force of global thermohaline circulation through the formation of dense deep water and high albedo due to the presence of perennial sea-ice. However, the Arctic sea-ice has not always existed in the past. Integrated Ocean Drilling Program (IODP) Expedition 302 Arctic Coring Expedition (ACEX) has clarified that global warming (water temperature: ca. 14~16○C) during 48~49 Ma Azolla Event induced the loss of sea-ice and desalination of surface ocean, and that sea-ice formed again some million years later (45 Ma). In the Arctic Ocean, warming and cooling events repeated over and over (e.g., Brinkhuis et al., 2006; Moran et al., 2006; März et al., 2010). Large variations in the extent of thermohaline circulation through time often caused stagnation of seawater and appearance of anaerobic environment where hydrogen sulfide was produced by bacterial sulfate reduction. Ogawa et al. (2009) confirmed occurrence of framboidal pyrite in the ACEX sediments, and suggested that the Arctic Ocean at the time was anoxic, analogous to the modern Black Sea, mainly based on sulfur isotope analysis. To further clarify the variations in the nutrient status of the Arctic Ocean, we focus on the geochemical cycle of phosphorus. We performed sequential extraction analysis of sedimentary phosphorus in the ACEX sediments, using the method that we improvped based on the original SEDEX method by Ruttenberg (1992) and Schenau et al. (2000). In our method, phosphorus fractions are divided into five forms; (1) absorbed P, (2) Feoxide-P, (4) carbonate fluorapatite (CFAP) + CaCO3-P + hydroxylapatite (HAP), (4) detrital P, and (5) organic P. Schenau et al. (2000) divided the (3) fraction into non-biological CFAP and biological HAP and CaCO3-P. When the Arctic Ocean was closed and in its warming period, the water mass was most likely stratified and an anaerobic condition would have prevailed where

  3. Finding Sequential Patterns from Large Sequence Data

    OpenAIRE

    Fazekas Gabor; Mahdi Esmaeili (1971-) (informatikus)

    2010-01-01

    Data mining is the task of discovering interesting patterns from large amounts of data. There are many data mining tasks, such as classification, clustering, association rule mining, and sequential pattern mining. Sequential pattern mining finds sets of data items that occur together frequently in some sequences. Sequential pattern mining, which extracts frequent subsequences from a sequence database, has attracted a great deal of interest during the recent data mining research because it is ...

  4. BCR-ABL fusion genes are inducible by X-irradiation in vitro

    International Nuclear Information System (INIS)

    The Philadelphia chromosome consists of a reciprocal translocation between the ABL oncogene at chromosome 9q34 and the BCR gene at chromosome 22q resulting in the expression of chimeric BCR-ABL mRNAs specific to chronic myelogenous leukemia (CML). The presence of the fusion genes can be detected with high specificity and sensitivity by means of reverse transcription and polymerase chain reaction. Using this assay, it was possible to detect BCR-ABL fusion genes induced among HL60 cells after 100 Gy of X-irradiation in vitro. A total of five fusion gene transcripts were obtained. These fusion genes contained not only CML-specific BCR-ABL rearrangements, but also other forms of BCR-ABL fusions. These latter genes had junctions of BCR exon 4/ABL exon 2 intervened by a segment of DNA of unknown origin, BCR exon 5/ABL exon 2, and BCR exon 4/ABL exon 2. The results appear to be the first evidence for the induction of the BCR-ABL fusion gene by X-irradiation. In terms of leukemogenesis, it is suggested that only those cells bearing certain CML-related BCR-ABL fusion genes are positively selected by virtue of a growth advantage in vivo. (author)

  5. Allosteric inhibition enhances the efficacy of ABL kinase inhibitors to target unmutated BCR-ABL and BCR-ABL-T315I

    Directory of Open Access Journals (Sweden)

    Mian Afsar

    2012-09-01

    Full Text Available Abstract Background Chronic myelogenous leukemia (CML and Philadelphia chromosome-positive (Ph+ acute lymphatic leukemia (Ph + ALL are caused by the t(9;22, which fuses BCR to ABL resulting in deregulated ABL-tyrosine kinase activity. The constitutively activated BCR/ABL-kinase “escapes” the auto-inhibition mechanisms of c-ABL, such as allosteric inhibition. The ABL-kinase inhibitors (AKIs Imatinib, Nilotinib or Dasatinib, which target the ATP-binding site, are effective in Ph + leukemia. Another molecular therapy approach targeting BCR/ABL restores allosteric inhibition. Given the fact that all AKIs fail to inhibit BCR/ABL harboring the ‘gatekeeper’ mutation T315I, we investigated the effects of AKIs in combination with the allosteric inhibitor GNF2 in Ph + leukemia. Methods The efficacy of this approach on the leukemogenic potential of BCR/ABL was studied in Ba/F3 cells, primary murine bone marrow cells, and untransformed Rat-1 fibroblasts expressing BCR/ABL or BCR/ABL-T315I as well as in patient-derived long-term cultures (PDLTC from Ph + ALL-patients. Results Here, we show that GNF-2 increased the effects of AKIs on unmutated BCR/ABL. Interestingly, the combination of Dasatinib and GNF-2 overcame resistance of BCR/ABL-T315I in all models used in a synergistic manner. Conclusions Our observations establish a new approach for the molecular targeting of BCR/ABL and its resistant mutants using a combination of AKIs and allosteric inhibitors.

  6. Sequential injection/bead injection lab-on-valve schemes for on-line solid phase extraction and preconcentration of ultra-trace levels of heavy metals with determination by ETAAS and ICPMS

    DEFF Research Database (Denmark)

    Wang, Jianhua; Hansen, Elo Harald; Miró, Manuel

    2003-01-01

    are focused on the applications of SI-BI-LOV protocols for on-line microcolumn based solid phase extraction of ultra-trace levels of heavy metals, employing the so-called renewable surface separation and preconcentration manipulatory scheme. Two types of sorbents have been employed as packing material......This communication presents an overview of the state-of-the-art of the exploitation of sequential injection (SI)-bead injection (BI)-lab-on-valve (LOV) schemes for automatic on-line sample pre-treatments interfaced with ETAAS and ICPMS detection as conducted in the authors' group. The discussions...

  7. What do results of common sequential fractionation and single-step extractions tell us about P binding with Fe and Al compounds in non-calcareous sediments?

    Czech Academy of Sciences Publication Activity Database

    Jan, Jiří; Borovec, Jakub; Kopáček, Jiří; Hejzlar, Josef

    2013-01-01

    Roč. 47, č. 2 (2013), s. 547-557. ISSN 0043-1354 R&D Projects: GA ČR(CZ) GA206/09/1764; GA MZe(CZ) QH81012; GA MZe(CZ) QI102A265 Institutional support: RVO:60077344 Keywords : sequential fractionation * ascorbate and oxalate extration * non-calcareous sediments Subject RIV: DA - Hydrology ; Limnology Impact factor: 5.323, year: 2013

  8. Sequential chemical extraction of heavy metals in a study of the chemical alteration of mine tailings at Ticapampa (Huaraz, Peru); Extraccion quimica secuencial de metales pesados en el estudio de alteracion quimica de relaves de mina en Ticapampa (Huaraz, Peru)

    Energy Technology Data Exchange (ETDEWEB)

    Jara Facundo, M. A.

    2011-07-01

    The upper reaches of the Rio Santa (Huaraz, Peru) are highly affected by the mining activities of generally small and very small mining companies located in two specific areas, Cordillera Blanca, and Cordillera Negra, with the largest mining claims located in the districts of Recuay and Ticapampa. To assess the mobility and bioavailability of heavy metals in the abandoned tailings pond belonging to the Alianza mining company in the district of Ticapampa, and to identify the fractions to which they are associated we applied a sequential chemical extraction. The results were compared with studies into their mineralogical characterization, a quantitative chemical analysis and a determination of potential acidity and potential neutralization by the ABA (acid-base accounting) method applied to samples of tailings. The sequential extraction procedure confirmed the mode of general alteration observed in the area through mineralogical studies: a relatively easy mobility of Pb, and Cd, and considerable immobility with regard to Ag, Cr and Co, as well as an intermediate mobility of Cu, Zn, and As. Significant cadmium and lead contents found in the most mobile fractions of the tailings may represent an environmental threat, bearing in mind the toxic nature of these elements. Despite the low mobility of arsenic, the total quantities of this element are so high that the waters of the Rio Santa are being affected. (Author) 22 refs.

  9. Finding Sequential Patterns from Large Sequence Data

    CERN Document Server

    Esmaeili, Mahdi

    2010-01-01

    Data mining is the task of discovering interesting patterns from large amounts of data. There are many data mining tasks, such as classification, clustering, association rule mining, and sequential pattern mining. Sequential pattern mining finds sets of data items that occur together frequently in some sequences. Sequential pattern mining, which extracts frequent subsequences from a sequence database, has attracted a great deal of interest during the recent data mining research because it is the basis of many applications, such as: web user analysis, stock trend prediction, DNA sequence analysis, finding language or linguistic patterns from natural language texts, and using the history of symptoms to predict certain kind of disease. The diversity of the applications may not be possible to apply a single sequential pattern model to all these problems. Each application may require a unique model and solution. A number of research projects were established in recent years to develop meaningful sequential pattern...

  10. Facile synthesis of hydrophilic polyamidoxime polymers as a novel solid-phase extraction matrix for sequential characterization of glyco- and phosphoproteomes.

    Science.gov (United States)

    Wang, Jiaxi; Wang, Yanan; Gao, Mingxia; Zhang, Xiangmin; Yang, Pengyuan

    2016-02-11

    Selective enrichment of glycopeptides or phosphopeptides with great biological significance is essential for high-throughput mass spectrometry analysis. However, most previously reported methods only focused on enriching either glycopeptides or phosphopeptides rather than enriching them both. In this work, for the first time, a facile route was developed for the synthesis of polyamidoxime polymers with intrinsic hydrophilic skeletons and attractive long chain structure. The polyamidoxime materials (co-PAN) were synthesized from polyacrylonitrile (PAN) precursor and were successfully used for selective enrichment of glycopeptides. After that, co-PAN as a matrix functionalized with titanium ions (co-PAN@Ti(4+)) could efficiently enrich phosphopeptides. The performances of the polymers for sequential selective and effective enrichment of glycopeptides and phosphopeptides were evaluated with standard peptide mixtures and human serum. Moreover, the efficiency of enrichment of the material was still retained after being used repeatedly. These results demonstrated that the polymers showed great potential in the practical application of proteomics. PMID:26803004

  11. Sequential Extraction of Oil and Polyphenols from Grape Seed by Column Chromatography Method%柱层析法连续提取葡萄籽油和多酚的工艺技术

    Institute of Scientific and Technical Information of China (English)

    王明阳; 李璠; 解瑞林; 韩寒冰; 刘杰凤

    2015-01-01

    研究连续提取并分离葡萄籽中的葡萄籽油和多酚的最佳工艺条件。将干燥的葡萄籽粉末用石油醚湿润装进层析柱中,浸泡2 h,先后用石油醚和60%乙醇溶液连续洗脱,连续收集石油醚6倍体积(mL/g)和60%乙醇溶液10倍体积洗脱液,混合洗脱液分层,醚层中含有葡萄籽油,下层醇水液中含有多酚。连续提取的葡萄籽油和多酚的提取率均达到99%,经萃取一次性分离葡萄籽油和多酚,得率分别是97.6%和98.0%。利用柱层析连续提取葡萄籽油和多酚,并通过萃取可把两种成分一次性分离开来,工艺简单,时间短,有机溶剂用量少,提取效率高,具有广泛应用价值。%To explore technical process and conditions for the sequential extraction of grape seed oil and polyphenol by using column chromatography from grape seed. Dried material was loaded into a column with petroleum ether and sequentially eluted with 6-fold (mL/g) petroleum ether, 10-fold 60% (v/v) ethanol. The elutes was separated into an ether fraction containing grape seed oil and an ethanol-water fraction containing polyphenol. Through this procedure, grape seed oil and polyphenol in grape seed were simultaneously extracted at 99%extraction rates and simply separated at higher than 97.6%and 98.0%recovery rates. The process was simple and short, with less consumption of solvents and high extraction rates. The method provides a simple and high-efficient extraction and separation of wide range bioactive substances.

  12. Immersed single-drop microextraction interfaced with sequential injection analysis for determination of Cr(VI) in natural waters by electrothermal-atomic absorption spectrometry

    International Nuclear Information System (INIS)

    Single-drop microextraction (SDME) and sequential injection analysis have been hyphenated for ultratrace metal determination by Electrothermal-Atomic Absorption Spectrometry (ETAAS). The novel method was targeted on extraction of the Cr(VI)-APDC chelate and encompasses the potential of SDME as a miniaturized and virtually solvent-free preconcentration technique, the ability of sequential injection analysis to handle samples and the versatility of furnace autosamplers for introducing microliter samples in ETAAS. The variables influencing the microextraction of Cr(VI) onto an organic solvent drop, i.e., type of organic solvent, microextraction time, stirring rate of the sample solution, drop volume, immersion depth of the drop, salting-out effect, temperature of the sample, concentration of the complexing agent and pH of the sample solution were fully investigated. For a 5 and 20 min microextraction time, the preconcentration factors were 20 and 70, respectively. The detection limit was 0.02 μg/L of Cr(VI) and the repeatability expressed as relative standard deviation was 7%. The SDME-SIA-ETAAS technique was validated against BCR CRM 544 (lyophilized solution) and applied to ultrasensitive determination of Cr(VI) in natural waters

  13. Speciation of heavy metals in garden soils. Evidences from selective and sequential chemical leaching

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Zhongqi; Lee, Leda; Dayan, Sara; Grinshtein, Michael [Brooklyn College of The City Univ. of New York, Brooklyn, NY (United States). Environmental Sciences Analytical Cnter; Shaw, Richard [USDA-NRCS NYC Soil Survey, Staten Island, NY (United States)

    2011-06-15

    Purpose: Gardening (especially food growing) in urban areas is becoming popular, but urban soils are often very contaminated for historical reasons. There is lack of sufficient information as to the bioavailability of soil heavy metals to plants and human in urban environments. This study examines the relative leachability of Cr, Ni, As, Cd, Zn, and Pb for soils with varying characteristics. The speciation and mobility of these metals can be qualitatively inferred from the leaching experiments. The goal is to use the data to shed some light on their bioavailability to plant and human, as well as the basis for soil remediation. Materials and methods: Selective and sequential chemical leaching methods were both used to evaluate the speciation of Cr, Ni, As, Cd, Zn, and Pb in soil samples collected from New York City residential and community gardens. The sequential leaching experiment followed a standard BCR four-step procedure, while selective leaching involved seven different chemical extractants. Results and discussion: The results from selective and sequential leaching methods are consistent. In general, very little of the heavy metals were found in the easily soluble or exchangeable fractions. Larger fractions of Cd and Zn can be leached out than other metals. Lead appears predominantly in the organic or carbonate fractions, of which {proportional_to} 30-60% is in the easily soluble organic fraction. Most As cannot be leached out by any of the extractants used, but it could have been complicated by the ineffective dissolution of oxides by ammonium hydroxylamine. Ni and Cr were mostly in the residual fractions but some released in the oxidizable fractions. Therefore, the leachability of metals follow the order Cd/Zn > Pb > Ni/Cr. Conclusions: Despite of the controversy and inaccuracy surrounding chemical leaching methods for the speciation of metals, chemical leaching data provide important, general, and easy-to-access information on the mobility of heavy metals

  14. Gads (Grb2-related adaptor downstream of Shc) is required for BCR-ABL-mediated lymphoid leukemia

    Science.gov (United States)

    Gillis, LC; Berry, DM; Minden, MD; McGlade, CJ; Barber, DL

    2016-01-01

    Philadelphia chromosome-positive leukemias, including chronic myeloid leukemia and B-cell acute lymphoblastic leukemia (B-ALL), are driven by the oncogenic BCR-ABL fusion protein. Animal modeling experiments utilizing retroviral transduction and subsequent bone marrow transplantation have demonstrated that BCR-ABL generates both myeloid and lymphoid disease in mice receiving whole bone marrow transduced with BCR-ABL. Y177 of BCR-ABL is critical to the development of myeloid disease, and phosphorylation of Y177 has been shown to induce GRB2 binding to BCR-ABL, followed by activation of the Ras and phosphoinositide 3 kinase signaling pathways. We show that the GRB2-related adapter protein, GADS, also associates with BCR-ABL, specifically through Y177 and demonstrate that BCR-ABL-driven lymphoid disease requires Gads. BCR-ABL transduction of Gads(−/−) bone marrow results in short latency myeloid disease within 3–4 weeks of transplant, while wild-type mice succumb to both a longer latency lymphoid and myeloid diseases. We report that GADS mediates a unique BCR-ABL complex with SLP-76 in BCR-ABL-positive cell lines and B-ALL patient samples. These data suggest that GADS mediates lymphoid disease downstream of BCR-ABL through the recruitment of specific signaling intermediates. PMID:23399893

  15. Regulation of hTERT by BCR-ABL at multiple levels in K562 cells

    Directory of Open Access Journals (Sweden)

    Chai Juin Hsien

    2011-12-01

    Full Text Available Abstract Background The cytogenetic characteristic of Chronic Myeloid Leukemia (CML is the formation of the Philadelphia chromosome gene product, BCR-ABL. Given that BCR-ABL is the specific target of Gleevec in CML treatment, we investigated the regulation of the catalytic component of telomerase, hTERT, by BCR-ABL at multiple levels in K562 cells. Methods Molecular techniques such as over expression, knockdown, real-time PCR, immunoprecipitation, western blotting, reporter assay, confocal microscopy, telomerase assays and microarray were used to suggest that hTERT expression and activity is modulated by BCR-ABL at multiple levels. Results Our results suggest that BCR-ABL plays an important role in regulating hTERT in K562 (BCR-ABL positive human leukemia cells. When Gleevec inhibited the tyrosine kinase activity of BCR-ABL, phosphorylation of hTERT was downregulated, therefore suggesting a positive correlation between BCR-ABL and hTERT. Gleevec treatment inhibited hTERT at mRNA level and significantly reduced telomerase activity (TA in K562 cells, but not in HL60 or Jurkat cells (BCR-ABL negative cells. We also demonstrated that the transcription factor STAT5a plays a critical role in hTERT gene regulation in K562 cells. Knockdown of STAT5a, but not STAT5b, resulted in a marked downregulation of hTERT mRNA level, TA and hTERT protein level in K562 cells. Furthermore, translocation of hTERT from nucleoli to nucleoplasm was observed in K562 cells induced by Gleevec. Conclusions Our data reveal that BCR-ABL can regulate TA at multiple levels, including transcription, post-translational level, and proper localization. Thus, suppression of cell growth and induction of apoptosis by Gleevec treatment may be partially due to TA inhibition. Additionally, we have identified STAT5a as critical mediator of the hTERT gene expression in BCR-ABL positive CML cells, suggesting that targeting STAT5a may be a promising therapeutic strategy for BCR-ABL positive

  16. Role of p21 RAS in p210 bcr-abl transformation of murine myeloid cells.

    Science.gov (United States)

    Mandanas, R A; Leibowitz, D S; Gharehbaghi, K; Tauchi, T; Burgess, G S; Miyazawa, K; Jayaram, H N; Boswell, H S

    1993-09-15

    The p21 RAS product has been implicated as part of the downstream signaling of certain nonreceptor tyrosine kinase oncogenes and several growth factor receptor-ligand interactions. We have reported that the chronic myelogenous leukemia oncogene p210 bcr-abl transforms a growth-factor-dependent myeloid cell line NFS/N1.H7 to interleukin-3 (IL-3) independence. In these p210 bcr-abl-transformed cells (H7 bcr-abl.A54) and in two other murine myeloid cell lines transformed to IL-3 independence by p210 bcr-abl, endogenous p21 RAS is activated as determined by an elevated ratio of associated guanosine triphosphate (GTP)/guanosine diphosphate (GDP), assayed by thin-layer chromatography of the nucleotides eluted from p21 RAS after immunoprecipitation with the Y13-259 antibody. Treatment of p210 bcr-abl-transformed cells with a specific tyrosine kinase inhibitor herbimycin A resulted in diminished tyrosine phosphorylation of p210 bcr-abl and associated proteins, without major reduction in expression of the p210 bcr-abl protein itself. Inhibition of p210 bcr-abl-dependent tyrosine phosphorylation resulted in a reduction of active p21RAS-GTP complexes in the transformed cells, in diminished expression of the nuclear early response genes c-jun and c-fos, and in lower cellular proliferation rate. To further implicate p21 RAS in these functional events downstream of p210 bcr-abl tyrosine phosphorylation, we targeted G-protein function directly by limiting the availability of GTP with the inosine monophosphate dehydrogenase inhibitor, tiazofurin (TR). In p210 bcr-abl-transformed cells treated for 4 hours with TR, in which the levels of GTP were reduced by 50%, but GDP, guanosine monophosphate, and adenosine triphosphate (ATP) were unaffected, p210 bcr-abl tyrosine phosphorylation was at control levels. However, expression of c-fos and c-jun nuclear proto-oncogenes were strongly inhibited and p21 RAS activity was downregulated. These findings show that p210 bcr-abl transduces

  17. Regulation of hTERT by BCR-ABL at multiple levels in K562 cells

    International Nuclear Information System (INIS)

    The cytogenetic characteristic of Chronic Myeloid Leukemia (CML) is the formation of the Philadelphia chromosome gene product, BCR-ABL. Given that BCR-ABL is the specific target of Gleevec in CML treatment, we investigated the regulation of the catalytic component of telomerase, hTERT, by BCR-ABL at multiple levels in K562 cells. Molecular techniques such as over expression, knockdown, real-time PCR, immunoprecipitation, western blotting, reporter assay, confocal microscopy, telomerase assays and microarray were used to suggest that hTERT expression and activity is modulated by BCR-ABL at multiple levels. Our results suggest that BCR-ABL plays an important role in regulating hTERT in K562 (BCR-ABL positive human leukemia) cells. When Gleevec inhibited the tyrosine kinase activity of BCR-ABL, phosphorylation of hTERT was downregulated, therefore suggesting a positive correlation between BCR-ABL and hTERT. Gleevec treatment inhibited hTERT at mRNA level and significantly reduced telomerase activity (TA) in K562 cells, but not in HL60 or Jurkat cells (BCR-ABL negative cells). We also demonstrated that the transcription factor STAT5a plays a critical role in hTERT gene regulation in K562 cells. Knockdown of STAT5a, but not STAT5b, resulted in a marked downregulation of hTERT mRNA level, TA and hTERT protein level in K562 cells. Furthermore, translocation of hTERT from nucleoli to nucleoplasm was observed in K562 cells induced by Gleevec. Our data reveal that BCR-ABL can regulate TA at multiple levels, including transcription, post-translational level, and proper localization. Thus, suppression of cell growth and induction of apoptosis by Gleevec treatment may be partially due to TA inhibition. Additionally, we have identified STAT5a as critical mediator of the hTERT gene expression in BCR-ABL positive CML cells, suggesting that targeting STAT5a may be a promising therapeutic strategy for BCR-ABL positive CML patients

  18. Phosphogypsum analysis: total content and extractable element concentrations

    Energy Technology Data Exchange (ETDEWEB)

    Gennari, Roseli F.; Medina, Nilberto H., E-mail: rgennari@dfn.if.usp.br, E-mail: medina@if.usp.br [Departamento de Fisica Nuclear, Instituto de Fisica (USP), Sao Paulo, SP (Brazil); Garcia, Isabella; Silveira, Marcilei A.G., E-mail: shila@if.usp.br [Centro Universitario da FEI. Sao Bernardo do Campo, SP (Brazil)

    2011-07-01

    Phosphogypsum stand for the chemical origin gypsum generated in fertilizers production, in which phosphate rock is attacked by sulfuric acid resulting in phosphoric acid (H{sub 3}PO{sub 4}) and phosphate fertilizers. Phosphogypsum is not a commercial product and it is stocked in large open areas or accumulated in lakes inducing to a major environmental problem due to the presence of toxic and radioactive elements. The increasing world agricultural demand is the real responsible for the severity of this environmental problem. Nevertheless, there are some possibilities for the application of this reject material, such as civil construction, waste water treatment, and in cultivated lands, etc. In the agriculture the phosphogypsum is commonly used as a nutrient source due to its large amounts of phosphorus, calcium and sulfur. However, there are still some environmental questions related to the use of this by-product since phosphogypsum is classified as TENORM (Technologically Enhanced Naturally Occurring Radioactive Material), which is a solid waste containing heavy metals and naturally occurring radioactive elements from the rock matrix. In this work, Plasma Mass Spectrometry (ICP-MS) was used to study phosphogypsum samples. Several acid solutions for samples digestion were evaluated in order to be feasible the chemical analysis. BCR sequential extractions were also performed. The results showed analyte concentrations are highly dependent on the acid solution used. The BCR guidelines could not be applied as used for soil, since the phosphogypsum solubility is different. So, it would be necessary to use different mass aliquots in the extractions, to be feasible an environmental evaluation. (author)

  19. Sequential diffusion of ammonium and nitrate from soil extracts to a polytetrafluoroethylene trap for 15N determination

    DEFF Research Database (Denmark)

    Sørensen, P.; Jensen, E.S.

    A novel diffusion method was used for preparation of NH4+- and NO3--N samples from soil extracts for N-15 determination. Ammonium, and nitrate following reduction to ammonia, are allowed to diffuse to an acid-wetted glass filter enclosed in polytetrafluoroethylene tape. The method was evaluated...... with simulated soil extracts obtained using 50 ml of 2 M potassium chloride solution containing 130-mu-g of NH4+-N (2.3 atom% N-15) and 120-mu-g of NO3--N (natural N-15 abundance). No cross-over in the N-15 abundances of NH4+-N and NO3--N was observed, indicating a quantitative diffusion process (72 h......, 25-degrees-C). Owing to the presence of inorganic nitrogen impurities in the potassium chloride, the N-15 enrichments should be corrected for the blank nitrogen content....

  20. The development of sequential separation methods for the analysis of actinides in sediments and biological materials using anion-exchange resins and extraction chromatography

    International Nuclear Information System (INIS)

    New, quantitative methods for the determination of actinides have been developed for application to marine environmental samples (e.g., sediment and fish). The procedures include aggressive dissolution, separation by anion-exchange resin, separation and purification by extraction chromatography (e.g., TRU, TEVA and UTEVA resins) with measurement of the radionuclides by semiconductor alpha-spectrometry (SAS). Anion-exchange has proved to be a strong tool to treat large volume samples, and extraction chromatography shows an excellent selectivity and reduction of the amounts of acids. The results of the analysis of uranium, thorium, plutonium and americium isotopes by this method in marine samples (IAEA-384, -385 and -414) provided excellent agreement with the recommended values with good chemical recoveries. (author)

  1. Sequential determination of metabolites involved in the biosynthesis of aromatic amino acids after ultrasound-assisted extraction from plants and reverse LC separation.

    Science.gov (United States)

    Alcaide-Molina, Miguel; Priego-Capote, Feliciano; Luque de Castro, María Dolores

    2013-02-15

    A dual method is proposed for the determination of metabolites involved in the shikimate pathway which are biomarkers of the effects of glyphosate action on plants exposed to this herbicide. Extraction of the target metabolites (phenylalanine, tryptophan, tyrosine and shikimic acid) from a wheat model plant was accelerated by ultrasound energy. After centrifugation and micro-filtration, 1 μL of extract was injected into the chromatograph in an isocratic regime for 4 min to determine shikimate by absorption at 254 nm. In the mean time, a 130 μL aliquot of extract was subjected to derivatization with o-phthaldialdehyde and 2-mercaptoethanol for 1 min, the reaction stopped and 1 μL of the solution chromatographied in a gradient regime prior to laser-induced fluorescence detection of the derivatized amino acids. The characterization of the dual method provided limits of detection around 0.03 μg mL(-1) for the aromatic amino acids and 1.52 μg mL(-1) for shikimate, whereas the limits of quantitation ranged between 0.084 and 0.093 μg mL(-1) for amino acids and was of 4.56 μg mL(-1) for shikimate. The suitability of the method was checked by application to Triticum aestivum (wheat) plants grown under controlled conditions, sprayed with different doses of glyphosate and collected at different times after exposition to the herbicide. PMID:23598041

  2. A Requirement for SOCS-1 and SOCS-3 Phosphorylation in Bcr-Abl-Induced Tumorigenesis

    Directory of Open Access Journals (Sweden)

    Xiaoxue Qiu

    2012-06-01

    Full Text Available Suppressors of cytokine signaling 1 and 3 (SOCS-1 and SOCS-3 are inhibitors of the Janus tyrosine kinase (JAK/signal transducers and activators of transcription (STAT pathway and function in a negative feedback loop during cytokine signaling. Abl transformation is associated with constitutive activation of JAK/STAT-dependent signaling. However, the mechanism by which Abl oncoproteins bypass SOCS inhibitory regulation remains poorly defined. Here, we demonstrate that coexpression of Bcr-Abl with SOCS-1 or SOCS-3 results in tyrosine phosphorylation of these SOCS proteins. Interestingly, SOCS-1 is highly tyrosine phosphorylated in one of five primary chronic myelogenous leukemia samples. Bcr-Abl-dependent tyrosine phosphorylation of SOCS-1 and SOCS-3 occurs mainly on Tyr 155 and Tyr 204 residues of SOCS-1 and on Tyr 221 residue of SOCS-3. We observed that phosphorylation of these SOCS proteins was associated with their binding to Bcr-Abl. Bcr-Abl-dependent phosphorylation of SOCS-1 and SOCS-3 diminished their inhibitory effects on the activation of JAK and STAT5 and thereby enhanced JAK/STAT5 signaling. Strikingly, disrupting the tyrosine phosphorylation of SOCS-1 or SOCS-3 impaired the expression of Bcl-XL protein and sensitized K562 leukemic cells to undergo apoptosis. Moreover, selective mutation of tyrosine phosphorylation sites of SOCS-1 or SOCS-3 significantly blocked Bcr-Abl-mediated tumorigenesis in nude mice and inhibited Bcr-Abl-mediated murine bone marrow transformation. Together, these results reveal a mechanism of how Bcr-Abl may overcome SOCS-1 and SOCS-3 inhibition to constitutively activate the JAK/STAT-dependent signaling, and suggest that Bcr-Abl may critically requires tyrosine phosphorylation of SOCS-1 and SOCS-3 to mediate tumorigenesis when these SOCS proteins are present in cells.

  3. Essential role for telomerase in chronic myeloid leukemia induced by BCR-ABL in mice

    OpenAIRE

    Vicente-Dueñas, Carolina; Barajas-Diego, Marcos; Romero-Camarero, Isabel; González-Herrero, Inés; Flores, Teresa; Sánchez García, Isidro

    2012-01-01

    The telomerase protein is constitutively activated in malignant cells from many patients with cancer, including the chronic myeloid leukemia (CML), but whether telomerase is essential for the pathogenesis of this disease is not known. Here, we used telomerase deficient mice to determine the requirement for telomerase in CML induced by BCR-ABL in mouse models of CML. Loss of one telomerase allele or complete deletion of telomerase prevented the development of leukemia induced by BCR-ABL. Howev...

  4. Molecular Detection of BCR/ ABL Fusion Gene in Saudi Acute Lymphoblastic Leukemia Patients

    International Nuclear Information System (INIS)

    Background: Molecular cytogenetics is becoming one of the most useful tools targeting some genes which are generally considered to lead to leukemic transformation (as well as for numerical abnormalities). A fraction of acute lymphoblastic leukemia (ALL) cases carry the translocation t(9;22) (q34;ql1.2) which juxtaposes the ABL proto-oncogene to the BCR gene generating a chimeric gene, BCR/ABL. This aberration is more frequent in adult ALL (20%-40%) than in pediatric ALL >)5%), and predicts poor clinical outcome. Aim of our Work: Is to study BCR/ A BL fusion gene in ALL cases using fluorescent in situ hybridization. Patients and Methods: Twenty newly diagnosed ALL patients, 16 adult and 4 paediatric cases, were included in the study, 11 cases (55%) were of precursor B phenotype, S cases (40%) belonged to T lineage, while one case was bi phenotypic expressing mainly precursor B cell markers tether with CD13, CD33, CD117, Detection of BCR/ABL fusion gene was done using interphase FISH technique and was confirmed molecularly using the RT-PCR technique. Results: BCR/ ABL fusion gene was negative in all the examined cases, yet abnormality involving 9q34, ABL gene, either by addition or deletion was detected in three cases (15%). Two of these cases were associated with BCR gene extra copies (three and four copies, respectively). Conclusion: This may reflect the frequency of association of ABL gene and BCR gene abnormality in our cases, and that absence of fusion gene BCR/ABL does not exclude their role in the leukomogenic process, yet a larger study is required to confirm and detect the prevalence of these gene disturbances in ALL and their association

  5. Lack of bcr and abr promotes hypoxia-induced pulmonary hypertension in mice.

    Directory of Open Access Journals (Sweden)

    Min Yu

    Full Text Available BACKGROUND: Bcr and Abr are GTPase activating proteins that specifically downregulate activity of the small GTPase Rac in restricted cell types in vivo. Rac1 is expressed in smooth muscle cells, a critical cell type involved in the pathogenesis of pulmonary hypertension. The molecular mechanisms that underlie hypoxia-associated pulmonary hypertension are not well-defined. METHODOLOGY/PRINCIPAL FINDINGS: Bcr and abr null mutant mice were compared to wild type controls for the development of pulmonary hypertension after exposure to hypoxia. Also, pulmonary arterial smooth muscle cells from those mice were cultured in hypoxia and examined for proliferation, p38 activation and IL-6 production. Mice lacking Bcr or Abr exposed to hypoxia developed increased right ventricular pressure, hypertrophy and pulmonary vascular remodeling. Perivascular leukocyte infiltration in the lungs was increased, and under hypoxia bcr-/- and abr-/- macrophages generated more reactive oxygen species. Consistent with a contribution of inflammation and oxidative stress in pulmonary hypertension-associated vascular damage, Bcr and Abr-deficient animals showed elevated endothelial leakage after hypoxia exposure. Hypoxia-treated pulmonary arterial smooth muscle cells from Bcr- or Abr-deficient mice also proliferated faster than those of wild type mice. Moreover, activated Rac1, phosphorylated p38 and interleukin 6 were increased in these cells in the absence of Bcr or Abr. Inhibition of Rac1 activation with Z62954982, a novel Rac inhibitor, decreased proliferation, p38 phosphorylation and IL-6 levels in pulmonary arterial smooth muscle cells exposed to hypoxia. CONCLUSIONS: Bcr and Abr play a critical role in down-regulating hypoxia-induced pulmonary hypertension by deactivating Rac1 and, through this, reducing both oxidative stress generated by leukocytes as well as p38 phosphorylation, IL-6 production and proliferation of pulmonary arterial smooth muscle cells.

  6. Evaluation of Morpholino Antisense Oligos’ Role on BCR-ABL Gene Silencing in the K562 Cell Line

    Directory of Open Access Journals (Sweden)

    Bahman Delalat

    2010-01-01

    Full Text Available Objective: Chronic myeloid leukemia (CML develops when a hematopoietic stem cellacquires the BCR/ABL fusion gene. This causes these transformed hematopoietic cellsto have a greater than normal proliferation rate. Scientists attempt to improve the CMLtreatment process by silencing the BCR/ABL oncogene. In this work, we used morpholinoantisense oligos to silence the BCR/ABL oncogene.Materials and Methods: In this study, the K562 was used as a BCR/ABL fusion-genepositive cell line and the Jurkat cell line as a control. We explored the inhibiting capacityof morpholino antisense oligos in the the expression of the BCR/ABL oncogene andstudied their p210 BCR/ABL suppression, inhibition of cell proliferation and stimulation ofapoptosis in the K562 cells after 24 and 48 hours. Endo-Porter was used for delivery ofmorpholino antisense oligos into cell cytosols. Meanwhile, flow cytometric analysis wasperformed in order to determine the appropriate concentration of morpholino antisenseoligos.Results: Prolonged exposure of the K562 cell line to the morpholino antisense oligostargeted against the BCR-ABL gene showed proliferation inhibition as its main feature.After western blotting, we found that complete silencing of BCR/ABL was achieved, butflow cytometric analysis showed no broad apoptosis.Conclusion: The results indicate that the Morpholino antisense oligo is able to inhibitp210 BCR/ABL; however, it cannot induce broad apoptosis due to co-silencing of BCR.

  7. In-situ determination of metallic variation and multi-association in single particles by combining synchrotron microprobe, sequential chemical extraction and multivariate statistical analysis

    International Nuclear Information System (INIS)

    Highlights: • A comprehensive method for detecting individual particles was proposed. • The metallic distribution, speciation and correlation in particles were detected. • The metallic variation under different chemical environments was elucidated. • Cu/Zn and Fe/Mn/Cr/Ni were associated with each other and matrix in APC residues. • Metals existed as amorphous forms besides as chlorides and oxides in APC residues. - Abstract: Due to the heterogeneity of metal distribution, it is challenging to identify the speciation, source and fate of metals in solid samples at micro scales. To overcome these challenges single particles of air pollution control residues were detected in situ by synchrotron microprobe after each step of chemical extraction and analyzed by multivariate statistical analysis. Results showed that Pb, Cu and Zn co-existed as acid soluble fractions during chemical extraction, regardless of their individual distribution as chlorides or oxides in the raw particles. Besides the forms of Fe2O3, MnO2 and FeCr2O4, Fe, Mn, Cr and Ni were closely associated with each other, mainly as reducible fractions. In addition, the two groups of metals had interrelations with the Si-containing insoluble matrix. The binding could not be directly detected by micro-X-ray diffraction (μ-XRD) and XRD, suggesting their partial existence as amorphous forms or in the solid solution. The combined method on single particles can effectively determine metallic multi-associations and various extraction behaviors that could not be identified by XRD, μ-XRD or X-ray absorption spectroscopy. The results are useful for further source identification and migration tracing of heavy metals

  8. Sequential diffusion of ammonium and nitrate from soil extracts to a polytetrafluoroethylene trap for 15N determination

    DEFF Research Database (Denmark)

    Sørensen, P.; Jensen, E.S.

    with simulated soil extracts obtained using 50 ml of 2 M potassium chloride solution containing 130-mu-g of NH4+-N (2.3 atom% N-15) and 120-mu-g of NO3--N (natural N-15 abundance). No cross-over in the N-15 abundances of NH4+-N and NO3--N was observed, indicating a quantitative diffusion process (72 h......, 25-degrees-C). Owing to the presence of inorganic nitrogen impurities in the potassium chloride, the N-15 enrichments should be corrected for the blank nitrogen content....

  9. BCR certified reference materials for reactor neutron dosimetry

    International Nuclear Information System (INIS)

    A series of reference materials intended for use as activation or fission monitors for neutron fluence rate measurements has been prepared by the Joint Research Centre of the European Commission. Certification has been carried out by expert European laboratories and distribution of the certified reference materials (CRMs) is through the BCR programme of the Commission. The list (18 CRMs) includes materials to cover the complete energy spectrum, and suitable for different irradiation times. Fission monitors are 238UO2 or 237NpO2 in the form of microspheres. Activation monitors are high purity metals (Ni, Cu, Al, Fe, Nb, Rh, or Ti), certified for interfering trace impurities, or dilute aluminium-based alloys, where aluminium is chosen as a suitable matrix for reducing the neutron self-shielding effect. Newly certified materials are IRMM-530R Al-0.1%Au, replacing the exhausted IRMM-530 material, used as comparator for k0-standardization, and three new Al-Co alloys (0.01-1%Co). Two others, in the process of certification are Al-0.1%Ag and Al-2%Sc for thermal and epithermal fluence rate measurements. Other candidate reference materials currently being certified are two uranium-doped glass intended for dosimetry by the fission-track technique. (author)

  10. Mining Target-Oriented Sequential Patterns With Time-Intervals

    Directory of Open Access Journals (Sweden)

    Hao-En Chueh

    2010-09-01

    Full Text Available A target-oriented sequential pattern is a sequential pattern with a concerned itemset in the end of pattern.A time-interval sequential pattern is a sequential pattern with time-intervals between every pair ofsuccessive itemsets. In this paper we present an algorithm to discover target-oriented sequential patternwith time-intervals. To this end, the original sequences are reversed so that the last itemsets can bearranged in front of the sequences. The contrasts between reversed sequences and the concerned itemsetare then used to exclude the irrelevant sequences. Clustering analysis is used with typical sequentialpattern mining algorithm to extract the sequential patterns with time-intervals between successiveitemsets. Finally, the discovered time-interval sequential patterns are reversed again to the original orderfor searching the target patterns

  11. Study on Stability of Sequential Extraction Method for Heavy Metal Speciations in Anoxic Sediments%缺氧沉积物中重金属形态连续萃取方法的稳定性研究

    Institute of Scientific and Technical Information of China (English)

    王畅; 夏冰; 王冠华; 宋玉梅; 吴凌涛; 郭鹏然

    2012-01-01

    Effects of the variations of pH value, temperature and colloidal particles in extractant solutions on heavy metals speciations were investigated by the sequential extraction procedure ( SEP) used in anoxic sediments at mariculture zone. The results showed that a slight increasement of pH values of extractant solutions lead to the decrease of concentrations of Cd and Zn in Stepl of SEP for acid soluble speciations, However, the obvious variations of pH values of extractant solutions had no significant influence on heavy metals speciations in Step2 for reducible fraction and Step3 for organic matter bound fraction ( except Pb) , respectively. The temperature of extractant solutions were slightly increased in Stepl and Step2 and decreased in Step3 due to the different reaction thermodynamics in extraction steps of SEP, and the variations of temperature( <2. 5) had little effects on the concentrations of heavy metals speciations. Due to adsorption, the formation of colloid in Stepl, Step2 and Step4 resulted in the decrease of Cd, Zn and Cu concentrations, respectively. However, the formation of colloid was controlled by extractant in Step3. Therefore, controlling pH and colloid in extractant solutions were available to improve the stability and accuracy of extraction results when SEP was applied to evaluate heavy metals speciations in anoxic sediments.%考察了海水养殖区域缺氧沉积物中重金属形态连续萃取法萃取过程中溶液pH值、温度变化和胶体形成对形态分离结果的影响.结果表明,连续萃取法Step1萃取酸溶态时,萃取液pH值的轻微升高使Pb和Zn的萃取结果明显降低;Step2萃取还原态时,萃取液pH值明显升高对重金属的萃取结果影响很小;Step3萃取有机质结合态时,萃取液pH值的降低对重金属萃取结果影响较小(除Pb外).由于连续萃取法中各步萃取反应的热力学过程不同,Step1和Step2萃取后溶液温度轻微升高而在Step3中溶液温度稍

  12. Reciprocal t(9;22 ABL/BCR fusion proteins: leukemogenic potential and effects on B cell commitment.

    Directory of Open Access Journals (Sweden)

    Xiaomin Zheng

    Full Text Available BACKGROUND: t(9;22 is a balanced translocation, and the chromosome 22 breakpoints (Philadelphia chromosome--Ph+ determine formation of different fusion genes that are associated with either Ph+ acute lymphatic leukemia (Ph+ ALL or chronic myeloid leukemia (CML. The "minor" breakpoint in Ph+ ALL encodes p185(BCR/ABL from der22 and p96(ABL/BCR from der9. The "major" breakpoint in CML encodes p210(BCR/ABL and p40(ABL/BCR. Herein, we investigated the leukemogenic potential of the der9-associated p96(ABL/BCR and p40(ABL/BCR fusion proteins and their roles in the lineage commitment of hematopoietic stem cells in comparison to BCR/ABL. METHODOLOGY: All t(9;22 derived proteins were retrovirally expressed in murine hematopoietic stem cells (SL cells and human umbilical cord blood cells (UCBC. Stem cell potential was determined by replating efficiency, colony forming--spleen and competitive repopulating assays. The leukemic potential of the ABL/BCR fusion proteins was assessed by in a transduction/transplantation model. Effects on the lineage commitment and differentiation were investigated by culturing the cells under conditions driving either myeloid or lymphoid commitment. Expression of key factors of the B-cell differentiation and components of the preB-cell receptor were determined by qRT-PCR. PRINCIPAL FINDINGS: Both p96(ABL/BCR and p40(ABL/BCR increased proliferation of early progenitors and the short term stem cell capacity of SL-cells and exhibited own leukemogenic potential. Interestingly, BCR/ABL gave origin exclusively to a myeloid phenotype independently from the culture conditions whereas p96(ABL/BCR and to a minor extent p40(ABL/BCR forced the B-cell commitment of SL-cells and UCBC. CONCLUSIONS/SIGNIFICANCE: Our here presented data establish the reciprocal ABL/BCR fusion proteins as second oncogenes encoded by the t(9;22 in addition to BCR/ABL and suggest that ABL/BCR contribute to the determination of the leukemic phenotype through their

  13. Sequential Back—Propagation

    Institute of Scientific and Technical Information of China (English)

    王晖; 刘大有; 等

    1994-01-01

    In this paper we consider the problem of sequential processing and present a sequential model based on the back-propagation algorithm.This model is intended to deal with intrinsically sequential problems,such as word recognition,speech recognition,natural language understanding.This model can be used to train a network to learn the sequence of input patterns,in a fixed order or a random order.Besides,this model is open- and partial-associative,characterized as “resognizing while accumulating”, which, as we argue, is mental cognition process oriented.

  14. Comparative study of the fate and mobility of metals discharged in mining and urban effluents using sequential extractions on suspended solids.

    Science.gov (United States)

    Gagnon, Christian; Turcotte, Patrice; Vigneault, Bernard

    2009-12-01

    The fate, bioavailability and environmental impacts of metals discharged in municipal and mining wastewater discharge will depend to a large extent on chemical speciation and distribution. Previous studies on metal bioaccumulation have shown that total metal concentrations are not a good predictor of bioavailability in the dispersion plumes of municipal effluents. The objective of this study was to determine the solid phase speciation of metals in surface waters receiving urban and mining effluents in order to assess their fate and relative mobility in the receiving environment. Suspended particulate matter was sampled using sediment traps at several sites downstream of effluent outfall plumes as well as at reference upstream sites. Particulate metal in operationally defined fractions--exchangeable/carbonates, reducible, oxidisable and residual--were determined in suspended particulate matter with a series of selective chemical extractions. Metal enrichment in suspended particles was generally observed in both mining and urban effluent discharges. When compared to its receiving environment, the mining effluent appeared to release more particulate metals (Cu, Fe, Zn) in the most reactive fractions (i.e. exchangeable/carbonates + reducible forms, 23-43%), while other released metals, such as Cd and Mn, were predominantly in the least reactive forms (i.e., oxidisable + residual, 73-97%). In contrast, the reactivity of all particulate metals, with the exception of Mn, from the urban effluent was much higher, with up to 65, 42, 30 and 43% for Cd, Cu, Fe and Zn, respectively, in the two most reactive fractions. As expected in effluent dispersion plumes, parameters such as the organic carbon, Fe oxide and carbonate contents have specific effects on the partitioning of several trace metals, particularly Cd, Cu and Zn. Our results indicated that the relative distributions of metals among geochemical fractions varied in the effluent receiving waters where organic carbon and

  15. Targeting the SH2-Kinase Interface in Bcr-Abl Inhibits Leukemogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Grebien, Florian; Hantschel, Oliver; Wojcik, John; Kaupe, Ines; Kovacic, Boris; Wyrzucki, Arkadiusz M.; Gish, Gerald D.; Cerny-Reiterer, Sabine; Koide, Akiko; Beug, Hartmut; Pawson, Tony; Valent, Peter; Koide, Shohei; Superti-Furga, Giulio (AAS); (Mount Sinai Hospital); (Med U. Vienna); (UC); (IMP-CNRS)

    2012-10-25

    Chronic myelogenous leukemia (CML) is caused by the constitutively active tyrosine kinase Bcr-Abl and treated with the tyrosine kinase inhibitor (TKI) imatinib. However, emerging TKI resistance prevents complete cure. Therefore, alternative strategies targeting regulatory modules of Bcr-Abl in addition to the kinase active site are strongly desirable. Here, we show that an intramolecular interaction between the SH2 and kinase domains in Bcr-Abl is both necessary and sufficient for high catalytic activity of the enzyme. Disruption of this interface led to inhibition of downstream events critical for CML signaling and, importantly, completely abolished leukemia formation in mice. Furthermore, disruption of the SH2-kinase interface increased sensitivity of imatinib-resistant Bcr-Abl mutants to TKI inhibition. An engineered Abl SH2-binding fibronectin type III monobody inhibited Bcr-Abl kinase activity both in vitro and in primary CML cells, where it induced apoptosis. This work validates the SH2-kinase interface as an allosteric target for therapeutic intervention.

  16. Finding Sequential Patterns from Large Sequence Data

    Directory of Open Access Journals (Sweden)

    Fazekas Gabor

    2010-01-01

    Full Text Available Data mining is the task of discovering interesting patterns from large amounts of data. There are many data mining tasks, such as classification, clustering, association rule mining, and sequential pattern mining. Sequential pattern mining finds sets of data items that occur together frequently in some sequences. Sequential pattern mining, which extracts frequent subsequences from a sequence database, has attracted a great deal of interest during the recent data mining research because it is the basis of many applications, such as: web user analysis, stock trend prediction, DNA sequence analysis, finding language or linguistic patterns from natural language texts, and using the history of symptoms to predict certain kind of disease. The diversity of the applications may not be possible to apply a single sequential pattern model to all these problems. Each application may require a unique model and solution. A number of research projects were established in recent years to develop meaningful sequential pattern models and efficient algorithms for mining these patterns. In this paper, we theoretically provided a brief overview three types of sequential patterns model.

  17. Genetic Sequential Dynamical Systems

    OpenAIRE

    Avino-Diaz, Maria A.; Ortiz, Humberto; Moreno, Oscar

    2006-01-01

    The whole complex process to obtain a protein encoded by a gene is difficult to include in a mathematical model. There are many models for describing different aspects of a genetic network. Finding a better model is one of the most important and interesting questions in computational biology. Sequential dynamical systems have been developed for a theory of computer simulation, and in this paper, a genetic sequential dynamical system is introduced. A gene is considered to be a function which c...

  18. Deep Sequential Neural Network

    OpenAIRE

    Denoyer, Ludovic; Gallinari, Patrick

    2014-01-01

    Neural Networks sequentially build high-level features through their successive layers. We propose here a new neural network model where each layer is associated with a set of candidate mappings. When an input is processed, at each layer, one mapping among these candidates is selected according to a sequential decision process. The resulting model is structured according to a DAG like architecture, so that a path from the root to a leaf node defines a sequence of transformations. Instead of c...

  19. EXTRACT

    DEFF Research Database (Denmark)

    Pafilis, Evangelos; Buttigieg, Pier Luigi; Ferrell, Barbra;

    2016-01-01

    The microbial and molecular ecology research communities have made substantial progress on developing standards for annotating samples with environment metadata. However, sample manual annotation is a highly labor intensive process and requires familiarity with the terminologies used. We have the...... and text-mining-assisted curation revealed that EXTRACT speeds up annotation by 15-25% and helps curators to detect terms that would otherwise have been missed.Database URL: https://extract.hcmr.gr/......., organism, tissue and disease terms. The evaluators in the BioCreative V Interactive Annotation Task found the system to be intuitive, useful, well documented and sufficiently accurate to be helpful in spotting relevant text passages and extracting organism and environment terms. Comparison of fully manual...

  20. Deletion of ABL/BCR on der(9 associated with severe basophilia

    Directory of Open Access Journals (Sweden)

    Shantashri Vaidya

    2011-01-01

    Full Text Available Chronic basophilic leukemia is a rare form in chronic myeloid leukemia patients. Only limited number of reports are available. Herein, we describe a patient who presented with fatigue, weight loss, leucocytosis, prominent basophilia, and mild eosinophilia. On biopsy, bone marrow was hypercellular with marked basophils. The immunophenotype showed abnormal expression of CD7, which is suggestive of basophilic maturation. Chromosomal analysis from GTG-banded metaphases revealed Ph positivity, and fluorescence in situ hybridization (FISH with BCR/ABL dual color, dual fusion probe showed single fusion on the der(22 chromosome and ABL/BCR fusion was deleted on the der(9 chromosome. The deletion (ABL/BCR on der(9 may be associated with basophilia which may be also indicative of the transformation of CML to acute myeloid leukemia.

  1. 基于Snake算法的气道内超声序列图像的边界提取%Edge Extraction of EBUS Sequential Images Based on Active Contour Model

    Institute of Scientific and Technical Information of China (English)

    郝立巍; 程远雄; 汪天富; 陈思平

    2012-01-01

    Objective:An endobronchial ultrasound is a procedure to provide further information to diagnose or determine the stage of a lung tumor and allow doctors to view regions of your lungs that have traditionally required more invasive surgical procedures to evaluate. In this paper, a new Snake model is proposed to extract edges in Endobronchial Ultrasound (EBUS). Methods:As a dimensionless quantity, local phase is invariant to changes in image brightness and contrast. In the proposed method, local phase is introduced into Snake model as image energy component. Results:Empirical evaluations of the performance of our algorithm relative to other edge extraction method are presented. Experiment results shows that our method presents comparable performances compared to the methods. Conclusions: The proposed Snake method can effectively extract edges in EBUS sequential images.%目的:气道内超声能为肺部肿瘤提供更多的诊断信息,能让医生以对病人伤害很小的方式检视患者肺部,而无需采用传统的有创手术方式.本文提出了一种能用于气道内超声边界提取的新的Snake算法模型.方法:作为非方向性指标,局部相位具有图像的亮度及对比度无关性.本文拟在Snake模型中引入局部相位,以设计其新的图像能量公式.结果:本文所提出的算法与现有的超声边界提取算法进行了提取结果对比.实验结果表明本文所提出的算法优于现有的算法.结论:本文所提出的新算法能有效地对气道内超声图像提取边界.

  2. Bilateral sequential Propionibacterium acnes exogenous endophthalmitis.

    Science.gov (United States)

    Saffra, Norman; Moriarty, Emily; Milman, Tatyana

    2016-12-01

    A 68-year-old man underwent uncomplicated sequential cataract extractions performed more than a year apart. He presented 6 months after the second surgery with persistent intraocular inflammation in both eyes. Cultures from both eyes grew Propionibacterium acnes and he responded well to treatment. Suspicion for delayed-onset post-operative endophthalmitis must remain high in uveitis cases that fail to resolve with anti-inflammatory treatments. The authors believe this is the first reported case of bilateral sequential P. acnes exogenous endophthalmitis. PMID:27220771

  3. Analysis of Heavy Metal Fractions in Plants by Two Steps Sequential Extraction Procedure%两步连续提取法测定植物中重金属的形态

    Institute of Scientific and Technical Information of China (English)

    吴慧梅; 李非里; 牟华倩; 张慧

    2012-01-01

    重金属在植物体内的迁移、转化很大程度上取决于它们的化学形态.文章提出了一种简化的两步连续提取法,根据元素在植物体内活动性的大小,将重金属依次分为乙醇提取态、盐酸提取态和残渣态.采用标准物质(茶叶)对连续提取方法的回收率和精密度进行验证.16次重复测定Cu、Pb、Zn、Cd、Fe和Mn六种重金属元素,3种形态含量之和占各元素总量的82%~116%之间,回收率满足形态分析的要求;各形态含量分析的相对标准偏差,除了Zn、Pb和Cd 3种元素的乙醇态和残渣态在32%~57%之间外,其余均小于20%,表明本方法具有较好的精密度,能满足分析要求.利用蔬菜基地采得的10份植物样品(黄瓜的根、茎、叶片和果实)考察了该方法对不同类型植物样分析的实际应用情况.结果表明,对于根、茎、叶和果实不同植物样品,各元素的3种形态之和占总量的84.6%~106%,回收率满足形态分析的要求.%Migration and transformation of heavy metals in plants depend largely on their chemical forms. A simple two-step sequential extraction procedure was proposed to divide heavy metals into ethanol-extractable fraction, hydrochloric acid-extractable fraction and the residue according to their activities in plants. The standard material (tea) was tested to validate the recovery and precision of the simplified extraction method. The sum of three fractions of Cu, Pb, Zn, Cd, FeandMn accounted for 82% to 116% of total metals with 16 repeating measurements, which showed that the recoveries can meet the requirements of fraction analysis. And for the relative standard deviation of content of each fraction in 16 repeating measurement, except that the ethanol-extractable fraction and residue of Zn, Pb and Cd were between 32% and 57%, the rest were less than 20%, indicating good precisions for fraction analysis. 10 pieces of plant samples including cucumber roots, stems

  4. Nilotinib treatment in mouse models of P190 Bcr/Abl lymphoblastic leukemia

    Directory of Open Access Journals (Sweden)

    Groffen John

    2007-10-01

    Full Text Available Abstract Background Ph-positive leukemias are caused by the aberrant fusion of the BCR and ABL genes. Nilotinib is a selective Bcr/Abl tyrosine kinase inhibitor related to imatinib, which is widely used to treat chronic myelogenous leukemia. Because Ph-positive acute lymphoblastic leukemia only responds transiently to imatinib therapy, we have used mouse models to test the efficacy of nilotinib against lymphoblastic leukemia caused by the P190 form of Bcr/Abl. Results After transplant of 10,000 highly malignant leukemic cells into compatible recipients, untreated mice succumbed to leukemia within 21 days, whereas mice treated with 75 mg/kg nilotinib survived significantly longer. We examined cells from mice that developed leukemia while under treatment for Bcr/Abl kinase domain point mutations but these were not detected. In addition, culture of such cells ex vivo showed that they were as sensitive as the parental cell line to nilotinib but that the presence of stromal support allowed resistant cells to grow out. Nilotinib also exhibited impressive anti-leukemia activity in P190 Bcr/Abl transgenic mice that had developed overt leukemia/lymphoma masses and that otherwise would have been expected to die within 7 days. Visible lymphoma masses disappeared within six days of treatment and leukemic cell numbers in peripheral blood were significantly reduced. Treated mice survived more than 30 days. Conclusion These results show that nilotinib has very impressive anti-leukemia activity but that lymphoblastic leukemia cells can become unresponsive to it both in vitro and in vivo through mechanisms that appear to be Bcr/Abl independent.

  5. Sistema de extração seqüencial da solução na macro e microporosidade do solo System of sequential extraction of solution in macro and microporosity of soil

    Directory of Open Access Journals (Sweden)

    Thomas V. Gloaguen

    2009-10-01

    Full Text Available Existem várias técnicas de extração da solução no solo; entretanto, a proporção entre a água gravitacional e as retidas por forças capilares é geralmente desconhecida. Neste estudo se propôs desenvolver um sistema de extração seqüencial da solução no solo a fim de caracterizar a sua composição química em função da porosidade do solo. Construíram-se colunas com terra fina secada ao ar de um Cambissolo de textura argilo-siltosa. As colunas foram saturadas por 24 h com água destilada, logo após, a solução no solo foi coletada aplicando-se sucessivamente na base das colunas um vácuo de: 0; -13,3; -26,7; -40,0; -53,3; -66,6 kPa. Mediram-se o volume, o pH, a condutividade elétrica e as concentrações de Na+, K+ e NO3-. Houve boa correlação entre o vácuo aplicado e o potencial mátrico do solo medido por tensiometria (não linear, r² = 0,998, validando o método proposto da extração seqüencial de solução. O estudo evidenciou importantes variações da composição química da solução nas diferentes porosidades do solo, com concentração iônica menor na macroporosidade, exceto para K+, demonstrando a necessidade de se uniformizar a metodologia de amostragem da solução do solo para evitar estimação incorreta da concentração de solutos no solo.Various methodologies for soil solution sampling are available, but the proportion between gravitational and capilar water is usually unknown. In this study, a sequential extraction system of soil water for determining its chemical composition as a function of the soil porosity is presented. Soil columns were filled by air-dried clay-loam Ultisol. The columns were saturated with distilled water for 24 h, and then the soil solution was sampled at the base of the column by applying the suction equivalent to 0, 13.3, 26.7, 40.0, 53.3 and 66.6 kPa. Volume, pH, electrical conductivity, Na+, K+ and NO3- were measured in the solution. The high correlation (non linear; r

  6. SEQUENTIAL EXTRACTION AND SPECIATION OF HEAVY METALS IN THE PROCESS OF COMPOSTING OF WASTE GARBAGE = EXTRAÇÃO SEQUENCIAL E ESPECIAÇÃO DE METAIS PESADOS NO DECORRER DO PROCESSO DE COMPOSTAGEM DE RESÍDUOS SÓLIDOS DOMICILIARES

    OpenAIRE

    José Carlos Chitolina; Fábio Cesar da Silva; Valter Barbieri; Stefan Barradas Podsclan

    2012-01-01

    Environmental pollution by heavy metals caused by the intensification of industrial activities, agriculture and urbanization, especially the generation of solid waste and the necessity of treat them biologically is a growing problem, causing serious ecological impacts. It carried out sequential extraction for heavy metals speciation in organic trash during composting, objecting the understanding of chemical Cu, Mn and Zn transformations and environmental risks. The extractors utilized in seq...

  7. Sequential injection-bead injection-lab-on-valve schemes for on-line solid phase extraction and preconcentration of ultra-trace levels of heavy metals with determination by electrothermal atomic absorption spectrometry and inductively coupled plasma mass spectrometry

    International Nuclear Information System (INIS)

    This communication presents an overview of the state-of-the-art of the exploitation of sequential injection (SI)-bead injection (BI)-lab-on-valve (LOV) schemes for automatic on-line sample pre-treatments interfaced with ETAAS and ICPMS detection as conducted in the authors' group. The discussions are focused on the applications of SI-BI-LOV protocols for on-line microcolumn based solid phase extraction of ultra-trace levels of heavy metals, employing the so-called renewable surface separation and preconcentration manipulatory scheme. Two types of sorbents have been employed as packing material, that is, the hydrophilic SP Sephadex C-25 cation exchange and iminodiacetate based Muromac A-1 chelating resins, and the hydrophobic poly(tetrafluoroethylene) (PTFE) and poly(styrene-divinylbenzene) copolymer alkylated with octadecyl groups (C18-PS/DVB). Using ETAAS as detection device, the easy-to-handle hydrophilic renewable reactors hold the features of improved R.S.D.s and LODs as compared to those operated in the conventional, permanent mode, in addition to the elimination of flow resistance. The hydrophobic columns fall into two categories, that is, the renewable one packed with C18-PS/DVB beads entails analogous R.S.D.s and LODs with respect to the conventional approach, while those with PTFE beads result in slightly inferior R.S.D.s and LODs by similar comparison, yet offering a wider dynamic range than when using an external permanent column. Moreover, the hydrophilic materials result in much higher enrichment of the analyte than the hydrophobic ones, although PTFE is the packing material that exhibits the best retention efficiency

  8. Development of a fully automated sequential injection solid-phase extraction procedure coupled to liquid chromatography to determine free 2-hydroxy-4-methoxybenzophenone and 2-hydroxy-4-methoxybenzophenone-5-sulphonic acid in human urine

    International Nuclear Information System (INIS)

    2-Hydroxy-4-methoxybenzophenone and 2-hydroxy-4-methoxybenzophenone-5-sulphonic acid, commonly known as benzophenone-3 (BZ3) and benzophenone-4 (BZ4), respectively, are substances widely used as UV filters in cosmetic products in order to absorb UV radiation and protect human skin from direct exposure to the deleterious wavelengths of sunlight. As with other UV filters, there is evidence of their percutaneous absorption. This work describes an analytical method developed to determine trace levels of free BZ3 and BZ4 in human urine. The methodology is based on a solid-phase extraction (SPE) procedure for clean-up and pre-concentration, followed by the monitoring of the UV filters by liquid chromatography-ultraviolet spectrophotometry detection (LC-UV). In order to improve not only the sensitivity and selectivity, but also the precision of the method, the principle of sequential injection analysis was used to automate the SPE process and to transfer the eluates from the SPE to the LC system. The application of a six-channel valve as an interface for the switching arrangements successfully allowed the on-line connection of SPE sample processing with LC analysis. The SPE process for BZ3 and BZ4 was performed using octadecyl (C18) and diethylaminopropyl (DEA) modified silica microcolumns, respectively, in which the analytes were retained and eluted selectively. Due to the matrix effects, the determination was based on standard addition quantification and was fully validated. The relative standard deviations of the results were 13% and 6% for BZ3 and BZ4, respectively, whereas the limits of detection were 60 and 30 ng mL-1, respectively. The method was satisfactorily applied to determine BZ3 and BZ4 in urine from volunteers that had applied a sunscreen cosmetic containing both UV filters.

  9. Development of a fully automated sequential injection solid-phase extraction procedure coupled to liquid chromatography to determine free 2-hydroxy-4-methoxybenzophenone and 2-hydroxy-4-methoxybenzophenone-5-sulphonic acid in human urine

    Energy Technology Data Exchange (ETDEWEB)

    Leon, Zacarias; Chisvert, Alberto; Balaguer, Angel [Departamento de Quimica Analitica, Facultad de Quimica, Universitat de Valencia, Doctor Moliner 50, 46100 Burjassot, Valencia (Spain); Salvador, Amparo, E-mail: amparo.salvador@uv.es [Departamento de Quimica Analitica, Facultad de Quimica, Universitat de Valencia, Doctor Moliner 50, 46100 Burjassot, Valencia (Spain)

    2010-04-07

    2-Hydroxy-4-methoxybenzophenone and 2-hydroxy-4-methoxybenzophenone-5-sulphonic acid, commonly known as benzophenone-3 (BZ3) and benzophenone-4 (BZ4), respectively, are substances widely used as UV filters in cosmetic products in order to absorb UV radiation and protect human skin from direct exposure to the deleterious wavelengths of sunlight. As with other UV filters, there is evidence of their percutaneous absorption. This work describes an analytical method developed to determine trace levels of free BZ3 and BZ4 in human urine. The methodology is based on a solid-phase extraction (SPE) procedure for clean-up and pre-concentration, followed by the monitoring of the UV filters by liquid chromatography-ultraviolet spectrophotometry detection (LC-UV). In order to improve not only the sensitivity and selectivity, but also the precision of the method, the principle of sequential injection analysis was used to automate the SPE process and to transfer the eluates from the SPE to the LC system. The application of a six-channel valve as an interface for the switching arrangements successfully allowed the on-line connection of SPE sample processing with LC analysis. The SPE process for BZ3 and BZ4 was performed using octadecyl (C18) and diethylaminopropyl (DEA) modified silica microcolumns, respectively, in which the analytes were retained and eluted selectively. Due to the matrix effects, the determination was based on standard addition quantification and was fully validated. The relative standard deviations of the results were 13% and 6% for BZ3 and BZ4, respectively, whereas the limits of detection were 60 and 30 ng mL{sup -1}, respectively. The method was satisfactorily applied to determine BZ3 and BZ4 in urine from volunteers that had applied a sunscreen cosmetic containing both UV filters.

  10. Difference Between Index of Geoaccumulation and Sequential Extraction Procedure on Evaluating Heavy Metal Pollution in Aquatic Sediments%水体沉积物重金属污染地累积指数法和分级提取评价技术的差异

    Institute of Scientific and Technical Information of China (English)

    于常武; 王琳; 高超

    2015-01-01

    运用地累积指数法和分级提取评价技术,对辽西钼矿区下游女儿河沉积物中的Cu、Zn和Mo的污染程度进行了评价。结果表明,两者的评价结果存在差异性,地累积指数法在一定程度上过高估计了沉积物中重金属污染的风险,分级提取评价技术科学性更强,建议推广应用。%Heavy Metal Pollution of Cu, Zn and Mo were evaluated in the Never River sediments impacted with Mo mining activities in western Liaoning,with Index of Geoaccumulation and Sequential Extraction Procedure. This study indicates that the Index of Geoaccumulation overestimated the degree of heavy metal pollution risk relative to the Sequential Extraction Procedure to some extent. The sequential extraction procedure should be generalized in China because of its scientificity.

  11. Sequential Pattern Mining Using Formal Language Tools

    Directory of Open Access Journals (Sweden)

    R. S. Jadon

    2012-09-01

    Full Text Available In present scenario almost every system and working is computerized and hence all information and data are being stored in Computers. Huge collections of data are emerging. Retrieval of untouched, hidden and important information from this huge data is quite tedious work. Data Mining is a great technological solution which extracts untouched, hidden and important information from vast databases to investigate noteworthy knowledge in the data warehouse. An important problem in data mining is to discover patterns in various fields like medical science, world wide web, telecommunication etc. In the field of Data Mining, Sequential pattern mining is one of the method in which we retrieve hidden pattern linked with instant or other sequences. In sequential pattern mining we extract those sequential patterns whose support count are greater than or equal to given minimum support threshold value. In current scenario users are interested in only specific and interesting pattern instead of entire probable sequential pattern. To control the exploration space users can use many heuristics which can be represented as constraints. Many algorithms have been developed in the fields of constraint mining which generate patterns as per user expectation. In the present work we will be exploring and enhancing the regular expression constraints .Regular expression is one of the constraint and number of algorithm developed for sequential pattern mining which uses regular expression as a constraint. Some constraints are neither regular nor context free like cross-serial pattern anbmcndm used in Swiss German Data. We cannot construct equivalent deterministic finite automata (DFA or Push down automata (PDA for such type of patterns. We have proposed a new algorithm PMFLT (Pattern Mining using Formal Language Tools for sequential pattern mining using formal language tools as constraints. The proposed algorithm finds only user specific frequent sequence in efficient

  12. Study on Modes of Occurrence of Bromine in Coals Using Sequential Chemical Extraction Procedure%逐级化学提取法研究煤中溴的赋存状态

    Institute of Scientific and Technical Information of China (English)

    彭炳先; 吴代赦; 李萍

    2011-01-01

    采用逐级化学提取法研究了煤中溴的赋存状态,用电感耦合等离子体质谱(ICP—MS)测定了煤及各种提取状态中溴的含量.结果表明,来自四川和重庆的8个煤中溴主要以水溶态、离子交换态、碳酸盐结合态、铁锰结合态和有机态存在,平均总提取率为88.2%.对于烟煤和无烟煤,前者有机态溴的相对量大于后者,平均值分别为22.3%和20.0%;而碳酸盐结合态溴小于后者,相对量分别为14.0%和19.2%;两者水溶态溴和铁锰结合态溴的相对量几乎相等.煤中离子交换态溴可能以有机质吸附为主,溴的各种赋存形态的相对量与其成煤时沉积环境%Modes of occurrence of bromine in eight coals from Sichuan and Chongqing were studied using inductively coupled plasma spectrometry and sequential chemical extraction. The results showed that the bromine mainly occur the water-soluble, ion exchangeable, carbonate, Fe-Mn oxides and organic fraction in these coals, which average total extraction rate was 88.2%. In bituminous coal and anthracite, the mean relative amount was 22.3% and 20.0% for organic bromine, 14.0% and 19.2% for the bromine of carbonate bound and almost equal for the bromine from water soluble and Fe-Mn oxidizes. The ion exchangeable bromine may be mainly adsorbed to organic matter in these coals. The relative amount of bromine in various modes of occurrence may not be very closely related to its sedimentary environment during the formation of coal. Bromine in coals from Sichuan and Chongqing should be paid more attention because its potential leachable rate was 36. 62%-86. 80% and potential leachable content was 7. 092-20. 10 μg/g.

  13. Sequential stochastic optimization

    CERN Document Server

    Cairoli, Renzo

    1996-01-01

    Sequential Stochastic Optimization provides mathematicians and applied researchers with a well-developed framework in which stochastic optimization problems can be formulated and solved. Offering much material that is either new or has never before appeared in book form, it lucidly presents a unified theory of optimal stopping and optimal sequential control of stochastic processes. This book has been carefully organized so that little prior knowledge of the subject is assumed; its only prerequisites are a standard graduate course in probability theory and some familiarity with discrete-paramet

  14. Sequential visibility-graph motifs

    Science.gov (United States)

    Iacovacci, Jacopo; Lacasa, Lucas

    2016-04-01

    Visibility algorithms transform time series into graphs and encode dynamical information in their topology, paving the way for graph-theoretical time series analysis as well as building a bridge between nonlinear dynamics and network science. In this work we introduce and study the concept of sequential visibility-graph motifs, smaller substructures of n consecutive nodes that appear with characteristic frequencies. We develop a theory to compute in an exact way the motif profiles associated with general classes of deterministic and stochastic dynamics. We find that this simple property is indeed a highly informative and computationally efficient feature capable of distinguishing among different dynamics and robust against noise contamination. We finally confirm that it can be used in practice to perform unsupervised learning, by extracting motif profiles from experimental heart-rate series and being able, accordingly, to disentangle meditative from other relaxation states. Applications of this general theory include the automatic classification and description of physical, biological, and financial time series.

  15. Altered BCR signalling quality predisposes to autoimmune disease and a pre-diabetic state

    OpenAIRE

    Königsberger, Sebastian; Prodöhl, Jan; Stegner, David; Weis, Vanessa; Andreas, Martin; Stehling, Martin; Schumacher, Theresa; Böhmer, Ruben; Thielmann, Ina; van Eeuwijk, Judith M M; Nieswandt, Bernhard; Kiefer, Friedemann

    2012-01-01

    The related tyrosine kinases Syk and Zap-70 are key signalling proteins downstream of antigen receptors. A knock-in strategy reveals that the two kinases differentially affect BCR signalling, leading to aberrant B cell section and increased risk of autoimmune disease.

  16. Sequential memory: Binding dynamics

    Science.gov (United States)

    Afraimovich, Valentin; Gong, Xue; Rabinovich, Mikhail

    2015-10-01

    Temporal order memories are critical for everyday animal and human functioning. Experiments and our own experience show that the binding or association of various features of an event together and the maintaining of multimodality events in sequential order are the key components of any sequential memories—episodic, semantic, working, etc. We study a robustness of binding sequential dynamics based on our previously introduced model in the form of generalized Lotka-Volterra equations. In the phase space of the model, there exists a multi-dimensional binding heteroclinic network consisting of saddle equilibrium points and heteroclinic trajectories joining them. We prove here the robustness of the binding sequential dynamics, i.e., the feasibility phenomenon for coupled heteroclinic networks: for each collection of successive heteroclinic trajectories inside the unified networks, there is an open set of initial points such that the trajectory going through each of them follows the prescribed collection staying in a small neighborhood of it. We show also that the symbolic complexity function of the system restricted to this neighborhood is a polynomial of degree L - 1, where L is the number of modalities.

  17. Synthetic Aperture Sequential Beamforming

    DEFF Research Database (Denmark)

    Kortbek, Jacob; Jensen, Jørgen Arendt; Gammelmark, Kim Løkke

    2008-01-01

    A synthetic aperture focusing (SAF) technique denoted Synthetic Aperture Sequential Beamforming (SASB) suitable for 2D and 3D imaging is presented. The technique differ from prior art of SAF in the sense that SAF is performed on pre-beamformed data contrary to channel data. The objective is to...

  18. Frequency of BCR-ABL Transcript Types in Syrian CML Patients

    Science.gov (United States)

    Farhat-Maghribi, Sulaf; Habbal, Wafa; Monem, Fawza

    2016-01-01

    Background. In Syria, CML patients are started on tyrosine kinase inhibitors (TKIs) and monitored until complete molecular response is achieved. BCR-ABL mRNA transcript type is not routinely identified, contrary to the recommendations. In this study we aimed to identify the frequency of different BCR-ABL transcripts in Syrian CML patients and highlight their significance on monitoring and treatment protocols. Methods. CML patients positive for BCR-ABL transcripts by quantitative RT-PCR were enrolled. BCR-ABL transcript types were investigated using a home-made PCR method that was adapted from published protocols and optimized. The transcript types were then confirmed using a commercially available research kit. Results. Twenty-four transcripts were found in 21 patients. The most common was b2a2, followed by b3a2, b3a3, and e1a3 present solely in 12 (57.1%), 3 (14.3%), 2 (9.5%), and 1 (4.8%), respectively. Three samples (14.3%) contained dual transcripts. While b3a2 transcript was apparently associated with warning molecular response to imatinib treatment, b2a2, b3a3, and e1a3 transcripts collectively proved otherwise (P = 0.047). Conclusion. It might be advisable to identify the BCR-ABL transcript type in CML patients at diagnosis, using an empirically verified method, in order to link the detected transcript with the clinical findings, possible resistance to treatment, and appropriate monitoring methods. PMID:27313614

  19. Harmonization of BCR-ABL mRNA quantification using a uniform multifunctional control plasmid in 37 international laboratories

    DEFF Research Database (Denmark)

    Müller, M C; Erben, P; Saglio, G; Gottardi, E; Nyvold, Charlotte Guldborg; Schenk, T; Ernst, T; Lauber, S; Kruth, J; Hehlmann, R; Hochhaus, A

    2008-01-01

    Individualized PCR strategies hamper comparability of molecular results between different laboratories in several fields of medicine. To harmonize BCR-ABL mRNA quantification an international multicenter trial involving 37 laboratories in 14 countries was initiated using 10 samples, each containing...... various dilutions (10, 2, 1 and 0.1%) of b3a2 or b2a2 BCR-ABL positive in normal leukocytes and negative controls. A novel control plasmid (pME-2) was designed for external calibration containing BCR-ABL and glucuronidase-beta (GUS) sequences. Median BCR-ABL/ABL ratios were 9.1, 1.8, 0.85 and 0.11% in b3a...... participating laboratories (13%) detected low BCR-ABL copy numbers in negative control samples; one laboratory failed to detect BCR-ABL in a low-level sample. We conclude that the use of a common control plasmid does indeed improve comparability of BCR-ABL mRNA quantification results. However, further...

  20. A BCR/ABL-hIL-2 DNA Vaccine Enhances the Immune Responses in BALB/c Mice

    Directory of Open Access Journals (Sweden)

    Yanan Qin

    2013-01-01

    Full Text Available The use of a DNA vaccine encoding the BCR/ABL fusion gene is thought to be a promising approach for patients with chronic myeloid leukemia (CML to eradicate minimal residual disease after treatment with chemotherapy or targeted therapy. In this study, our strategy employs genetic technology to create a DNA vaccine encoding the BCR/ABL fusion and human interleukin-2 (hIL-2 genes. The successfully constructed plasmids BCR/ABL-pIRES-hIL-2, BCR/ABL-pIRES, and pIRES-hIL-2 were delivered intramuscularly to BALB/c mice at 14-day intervals for three cycles. The transcription and expression of the BCR/ABL and hIL-2 genes were found in the injected muscle tissues. The interferon-γ (IFN-γ serum levels were increased, and the splenic CD4+/CD8+ T cell ratio was significantly decreased in the BCR/ABL-pIRES-hIL-2-injected mice. Furthermore, specific antibodies against K562 cells could be detected by indirect immunofluorescence. These results indicate that a DNA vaccine containing BCR/ABL and hIL-2 together may elicit increased in vivo humoral and cellular immune responses in BALB/c mice.

  1. p210 Bcr-Abl confers overexpression of inosine monophosphate dehydrogenase : an intrinsic pathway to drug resistance mediated by oncogene.

    Energy Technology Data Exchange (ETDEWEB)

    Gharehbaghi, K.; Burgess, G. S.; Collart, F. R.; Litz-Jackson, S.; Huberman, E.; Jayaram, H. N.; Boswell, H. S.; Center for Mechanistic Biology and Biotechnology; Lab. for Experimental Oncology; Indiana Univ. School of Medicine

    1994-01-01

    The p210 bcr-abl fusion protein tyrosine kinase oncogene has been implicated in the pathogenesis of chronic granulocytic leukemia (CGL). Specific intracellular functions performed by p210 bcr-abl have recently been delineated. We considered the possibility that p210 bcr-abl may also regulate the abundance of inosine 5'-monophosphate dehydrogenase (IMPDH) which is a rate-limiting enzyme for de novo guanylate synthesis. We performed studies of the inhibition of IMPDH by tiazofurin, which acts as a competitive inhibitor through its active species that mimics nicotinamide adenine dinucleotide (NAD), i.e. thiazole-4-carboxamide adenine dinucleotide (TAD). The mean inhibitory concentration (IC50) of tiazofurin for cellular proliferation inhibition was 2.3-2.8-fold greater in cells expressing p210 bcr-abl than in their corresponding parent cells proliferating under the influence of growth factors or in growth factor-independent derivative cells not expressing detectable p210 bcr-abl. IMPDH activity was 1.5-2.3-fold greater within cells expressing p210 bcr-abl than in their parent cells. This increase in enzyme activity was a result of 2-fold increased IMPDH protein as determined by immunoblotting. In addition, an increase in the Km value for NAD utilization by IMPDH was observed in p210 bcr-abl transformed cells, but this increase was within the range of resident NAD concentrations observed in the cells. Increased IMPDH protein in p210 bcr-abl transformed cells was traced to an increased level of IMP dehydrogenase II messenger RNA. Thus, regulation of IMPDH gene expression is mediated at least in part by the bcr-abl gene product and may therefore be indicative of a specific mechanism of intrinsic resistance to tiazofurin.

  2. p210 bcr-abl confers overexpression of inosine monophosphate dehydrogenase: an intrinsic pathway to drug resistance mediated by oncogene.

    Science.gov (United States)

    Gharehbaghi, K; Burgess, G S; Collart, F R; Litz-Jackson, S; Huberman, E; Jayaram, H N; Boswell, H S

    1994-08-01

    The p210 bcr-abl fusion protein tyrosine kinase oncogene has been implicated in the pathogenesis of chronic granulocytic leukemia (CGL). Specific intracellular functions performed by p210 bcr-abl have recently been delineated. We considered the possibility that p210 bcr-abl may also regulate the abundance of inosine 5'-monophosphate dehydrogenase (IMPDH) which is a rate-limiting enzyme for de novo guanylate synthesis. We performed studies of the inhibition of IMPDH by tiazofurin, which acts as a competitive inhibitor through its active species that mimics nicotinamide adenine dinucleotide (NAD), i.e. thiazole-4-carboxamide adenine dinucleotide (TAD). The mean inhibitory concentration (IC50) of tiazofurin for cellular proliferation inhibition was 2.3-2.8-fold greater in cells expressing p210 bcr-abl than in their corresponding parent cells proliferating under the influence of growth factors or in growth factor-independent derivative cells not expressing detectable p210 bcr-abl. IMPDH activity was 1.5-2.3-fold greater within cells expressing p210 bcr-abl than in their parent cells. This increase in enzyme activity was a result of 2-fold increased IMPDH protein as determined by immunoblotting. In addition, an increase in the Km value for NAD utilization by IMPDH was observed in p210 bcr-abl transformed cells, but this increase was within the range of resident NAD concentrations observed in the cells. Increased IMPDH protein in p210 bcr-abl transformed cells was traced to an increased level of IMP dehydrogenase II messenger RNA. Thus, regulation of IMPDH gene expression is mediated at least in part by the bcr-abl gene product and may therefore be indicative of a specific mechanism of intrinsic resistance to tiazofurin. PMID:7520100

  3. Document Clustering using Sequential Information Bottleneck Method

    OpenAIRE

    MS. P.J.Gayathri; S.C. Punitha; Dr.M.Punithavalli

    2010-01-01

    Document clustering is a subset of the larger field of data clustering, which borrows concepts from the fields of information retrieval (IR), natural language processing (NLP), and machine learning (ML). It is a more specific technique for unsupervised document organization, automatic topic extraction and fast information retrieval or filtering. There exist a wide variety of unsupervised clustering algorithms. In this paper presents a sequential algorithm for document clustering based with an...

  4. Extended Time Constraints for Generalized Sequential Patterns

    OpenAIRE

    Fiot, Céline

    2006-01-01

    Version étendue de l'article soumis à la revue IJWET Mining temporal knowledge has many applications. Such knowledge can be all the more interesting as some time constraints between events can be pushed into during theminingtask. As well in data mining as in machine learning, some methods have been proposedto extract and manage such knowledge using temporal constraints. In particular some work has been done to mine generalized sequential patterns. However such constraints are often too cri...

  5. Combination of sequential chemical extraction and modelling of dam-break wave propagation to aid assessment of risk related to the possible collapse of a roasted sulphide tailings dam.

    Science.gov (United States)

    Pérez-López, Rafael; Sáez, Reinaldo; Alvarez-Valero, Antonio M; Miguel Nieto, José; Pace, Gaetano

    2009-10-15

    The Sotiel-Coronada abandoned mining district (Iberian Pyrite Belt) produced complex massive sulphide ores which were processed by flotation to obtain Cu, Zn and Pb concentrates. The crude pyrite refuses were roasted for sulphuric acid production in a plant located close to the flotation site, and waste stored in a tailing dam. The present study was focused on the measurements of flow properties, chemical characterization and mineralogical determination of the roasted pyrite refuses with the aim of assessing the potential environmental impact in case of dam collapse. Chemical studies include the determination of the total contaminant content and information about their bio-availability or mobility using sequential extraction techniques. In the hypothetical case of the tailing dam breaking up and waste spilling (ca. 4.54Mt), a high density mud flow would flood the Odiel river valley and reach both Estuary of Huelva (Biosphere Reserve by UNESCO, 1983) and Atlantic Ocean in matter of a couple of days, as it was predicted by numerical simulations of dam-break waves propagation through the river valley based on quasi-2D Saint-Venant equations. The total amount of mobile pollutants that would be released into the surrounding environment is approximately of 7.1.10(4)t of S, 1.6.10(4)t of Fe, 1.4.10(4)t of As, 1.2.10(4)t of Zn, 1.0.10(4)t of Pb, 7.4.10(3)t of Mn, 2.2.10(3)t of Cu, 1.5.10(2)t of Co, 36t of Cd and 17t of Ni. Around 90-100% of S, Zn, Co and Ni, 60-70% of Mn and Cd, 30-40% of Fe and Cu, and 5% of As and Pb of the mobile fraction would be easily in the most labile fraction (water-soluble pollutants), and therefore, the most dangerous and bio-available for the environment. This gives an idea of the extreme potential risk of roasted pyrite ashes to the environment, until now little-described in the scientific literature. PMID:19683794

  6. Sequential measurements of conjugate observables

    Energy Technology Data Exchange (ETDEWEB)

    Carmeli, Claudio [Dipartimento di Fisica, Universita di Genova, Via Dodecaneso 33, 16146 Genova (Italy); Heinosaari, Teiko [Department of Physics and Astronomy, Turku Centre for Quantum Physics, University of Turku, 20014 Turku (Finland); Toigo, Alessandro, E-mail: claudio.carmeli@gmail.com, E-mail: teiko.heinosaari@utu.fi, E-mail: alessandro.toigo@polimi.it [Dipartimento di Matematica ' Francesco Brioschi' , Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano (Italy)

    2011-07-15

    We present a unified treatment of sequential measurements of two conjugate observables. Our approach is to derive a mathematical structure theorem for all the relevant covariant instruments. As a consequence of this result, we show that every Weyl-Heisenberg covariant observable can be implemented as a sequential measurement of two conjugate observables. This method is applicable both in finite- and infinite-dimensional Hilbert spaces, therefore covering sequential spin component measurements as well as position-momentum sequential measurements.

  7. Forced Sequence Sequential Decoding

    DEFF Research Database (Denmark)

    Jensen, Ole Riis

    In this thesis we describe a new concatenated decoding scheme based on iterations between an inner sequentially decoded convolutional code of rate R=1/4 and memory M=23, and block interleaved outer Reed-Solomon codes with non-uniform profile. With this scheme decoding with good performance is...... of computational overflow. Analytical results for the probability that the first Reed-Solomon word is decoded after C computations are presented. This is supported by simulation results that are also extended to other parameters....... possible as low as Eb/No=0.6 dB, which is about 1.7 dB below the signal-to-noise ratio that marks the cut-off rate for the convolutional code. This is possible since the iteration process provides the sequential decoders with side information that allows a smaller average load and minimizes the probability...

  8. Expression of p190 BCR-ABL fusion gene in a patient with chronic myeloid leukemia Expressão do rearranjo gênico BCR-ABL com ponto de quebra na região menor do gene BCR em um paciente com leucemia mielóide crônica

    Directory of Open Access Journals (Sweden)

    P. V. B. Carvalho

    2003-01-01

    Full Text Available A minority of chronic myeloid leukemia cases have breakpoints in the minor cluster region (m-bcr of the BCR-ABL gene. We report on a patient with Ph-positive and m-bcr breakpoint at diagnosis. She was treated with hydroxyurea and interferon-alpha. Two years later, she developed a lymphoid blast crisis and died shortly after. We discuss herein the different forms of the BCR-ABL oncogene, its products, and the possible influence of them on the clinical outcome of patients with the disease.A leucemia mielóide crônica (LMC é uma doença mieloproliferativa clonal e caracteriza-se pela presença da translocação cromossômica entre os braços longos dos cromossomos 9 e 22, o denominado cromossomo Ph. Esta translocação determina a fusão dos genes BCR e ABL. Os diferentes pontos de quebra no gene BCR determinam a síntese de proteínas com diferentes pesos moleculares pelo gene BCR-ABL. Nós relatamos o caso de uma paciente portadora de LMC com ponto de quebra cromossômico na região menor do gene BCR. Foi tratada com hidroxiuréia e interferon alfa. Dois anos após o diagnóstico desenvolveu crise blástica linfóide e evoluiu rapidamente para o óbito. Nós discutimos nesta apresentação as diferentes formas do gene BCR-ABL e seus produtos e a possível influência dos mesmos na evolução clínica dos pacientes com a doença.

  9. Optimal sequential auctions

    OpenAIRE

    Jofre-Bonet, M; Pesendorfer, M.

    2014-01-01

    Sequential sealed first-price and open descending-price procurement auctions are studied. We examine which procurement auction rule achieves the low procurement cost. We show that the answer to this policy question depends on whether the items are complements or substitutes. With substitutes, the first-price procurement auction is preferred, while with complements, the open descending-price procurement auction is preferred. We also illustrate the procurement cost minimizing auction and the au...

  10. Sequential cloning of chromosomes

    Energy Technology Data Exchange (ETDEWEB)

    Lacks, S.A.

    1991-12-31

    A method for sequential cloning of chromosomal DNA and chromosomal DNA cloned by this method are disclosed. The method includes the selection of a target organism having a segment of chromosomal DNA to be sequentially cloned. A first DNA segment, having a first restriction enzyme site on either side. homologous to the chromosomal DNA to be sequentially cloned is isolated. A first vector product is formed by ligating the homologous segment into a suitably designed vector. The first vector product is circularly integrated into the target organism`s chromosomal DNA. The resulting integrated chromosomal DNA segment includes the homologous DNA segment at either end of the integrated vector segment. The integrated chromosomal DNA is cleaved with a second restriction enzyme and ligated to form a vector-containing plasmid, which is replicated in a host organism. The replicated plasmid is then cleaved with the first restriction enzyme. Next, a DNA segment containing the vector and a segment of DNA homologous to a distal portion of the previously isolated DNA segment is isolated. This segment is then ligated to form a plasmid which is replicated within a suitable host. This plasmid is then circularly integrated into the target chromosomal DNA. The chromosomal DNA containing the circularly integrated vector is treated with a third, retrorestriction enzyme. The cleaved DNA is ligated to give a plasmid that is used to transform a host permissive for replication of its vector. The sequential cloning process continues by repeated cycles of circular integration and excision. The excision is carried out alternately with the second and third enzymes.

  11. Forced Sequence Sequential Decoding

    DEFF Research Database (Denmark)

    Jensen, Ole Riis; Paaske, Erik

    1998-01-01

    We describe a new concatenated decoding scheme based on iterations between an inner sequentially decoded convolutional code of rate R=1/4 and memory M=23, and block interleaved outer Reed-Solomon (RS) codes with nonuniform profile. With this scheme decoding with good performance is possible as low...... as Eb/N0=0.6 dB, which is about 1.25 dB below the signal-to-noise ratio (SNR) that marks the cutoff rate for the full system. Accounting for about 0.45 dB due to the outer codes, sequential decoding takes place at about 1.7 dB below the SNR cutoff rate for the convolutional code. This is possible...... since the iteration process provides the sequential decoders with side information that allows a smaller average load and minimizes the probability of computational overflow. Analytical results for the probability that the first RS word is decoded after C computations are presented. These results are...

  12. Detection of BCR-ABL Fusion mRNA Using Reverse Transcriptase Loop-mediated Isothermal Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Dugan, L C; Hall, S; Kohlgruber, A; Urbin, S; Torres, C; Wilson, P

    2011-12-08

    RT-PCR is commonly used for the detection of Bcr-Abl fusion transcripts in patients diagnosed with chronic myelogenous leukemia, CML. Two fusion transcripts predominate in CML, Br-Abl e13a2 and e14a2. They have developed reverse transcriptase isothermal loop-mediated amplification (RT-LAMP) assays to detect these two fusion transcripts along with the normal Bcr transcript.

  13. The human leukemia oncogene bcr-abl abrogates the anchorage requirement but not the growth factor requirement for proliferation.

    OpenAIRE

    Renshaw, M W; McWhirter, J R; Wang, J Y

    1995-01-01

    Proliferation of normal cells in a multicellular organism requires not only growth factors but also the proper attachment to the extracellular matrix. A hallmark of neoplastic transformation is the loss of anchorage dependence which usually accompanies the loss of growth factor requirement. The Bcr-Abl tyrosine kinase of human leukemias is shown here to abrogate only the anchorage, not the growth factor, requirement. Bcr-Abl-transformed cells grow in soft agar but do not proliferate in serum-...

  14. Susceptibility of Ph-positive all to TKI therapy associated with Bcr-Abl rearrangement patterns: a retrospective analysis.

    Directory of Open Access Journals (Sweden)

    Yu Jing

    Full Text Available BACKGROUND: Tyrosine kinase inhibitors (TKIs have demonstrated success in the treatment of acute lymphoblastic leukemia (ALL in patients that express BCR-ABL rearrangements (Philadelphia chromosome [Ph]. The current study aimed to assess the efficacy of TKIs and prognostic factors in the treatment of adults with Ph+-ALL. METHODS: In this multicenter retrospective study, the relationship between Ph+-ALL and treatment outcomes among Chinese patients receiving TKI-containing induction/consolidation chemotherapy was examined. A total of 86 Ph+-ALL patients were included and followed for 3.85 (0.43-9.30 years. Overall survival (OS and event-free survival (EFS were analyzed. RESULTS: A total of 86 Ph+-ALL patients (40 females and 46 males; median age: 34.0 years were enrolled, including those with BCR/ABL transcripts 190 (n = 52, 210 (n = 25, and 230 (n = 2; BCR/ABL isoform determination was not available for 7 patients. Mortality was influenced by variable BCR/ABL transcripts and TKI administration, and BCR/ABL transcripts, hematopoietic stem cell transplantation (HSCT, and TKI administration were associated with the occurrence of events. The OS rate in the TKI administration group during steady state was significantly higher compared with those patients who did not receive TKI administration (P = 0.008, the EFS rate in the TKI administration group during steady state was significantly higher compared with those patients who did not receive TKIs (P = 0.012, and also higher than those with TKI salvage administration (P = 0.004. BCR/ABL transcripts 210 showed preferable OS and EFS compared with BCR/ABL transcripts 190 and 230 (P<0.05 for each. CONCLUSIONS: The susceptibility of Ph+-ALL to TKI associated with the patterns of BCR-ABL rearrangement is demonstrated for the first time, thus adding another risk-stratifying molecular prognostic tool for the management of patients with Ph+-ALL.

  15. An asymptomatic 61-year-old man with BCR-ABL-positive bone marrow following autologous transplantation for multiple myeloma

    OpenAIRE

    Roper, Nitin; DeAngelo, Daniel; Kuo, Frank; Cin, Paola Dal; Ghobrial, Irene; Aster, Jon C.

    2010-01-01

    A 61-year-old man treated with an autologous transplant for multiple myeloma was incidentally found to have a high level of BCR-ABL fusion gene-positive cells in his bone marrow. We describe the clinical decision-making process that led us to initiate therapy with imatinib, despite the absence of any clinical evidence of chronic myelogenous leukemia or other BCR-ABL associated hematologic malignancy.

  16. The BTK Inhibitor Ibrutinib (PCI-32765) Blocks Hairy Cell Leukaemia Survival, Proliferation and BCR Signalling: A New Therapeutic Approach

    OpenAIRE

    Sivina, Mariela; Kreitman, Robert J.; Arons, Evgeny; Ravandi, Farhad; Burger, Jan A.

    2014-01-01

    B cell receptor (BCR) signalling plays a critical role in the progression of several B-cell malignancies, but its role in hairy cell leukaemia (HCL) is ambiguous. Bruton tyrosine kinase (BTK), a key player in BCR signalling, migration and adhesion, can be targeted with ibrutinib, a selective, irreversible BTK inhibitor. We analysed BTK expression and function in HCL and analysed the effects of ibrutinib on HCL cells. We demonstrated uniform BTK protein expression in HCL cells. Ibrutinib signi...

  17. B Cells Regulate CD4+ T cell Responses to Papain Following BCR-Independent Papain Uptake

    OpenAIRE

    Dwyer, Daniel F.; Woodruff, Matthew C.; Carroll, Michael C.; Austen, K. Frank; Gurish, Michael F.

    2014-01-01

    Papain, a cysteine protease allergen with inherent adjuvant activity, induces potent IL4 expression by T cells in the popliteal lymph nodes (PLN) of mice following footpad immunization. Here we identify a novel, non-BCR mediated capacity for B cells to rapidly bind and internalize papain. B cells subsequently regulate the adaptive immune response by enhancing Inducible T cell Costimulator (ICOS) expression on CD4+ T cells and amplifying Th2 and T follicular helper induction. Antibody blockade...

  18. Environment-mediated drug resistance in Bcr/Abl-positive acute lymphoblastic leukemia

    OpenAIRE

    Feldhahn, Niklas; Arutyunyan, Anna; Stoddart, Sonia; ZHANG Bin; Schmidhuber, Sabine; Yi, Sun-ju; Kim, Yong-Mi; Groffen, John; Heisterkamp, Nora

    2012-01-01

    Although cure rates for acute lymphoblastic leukemia (ALL) have increased, development of resistance to drugs and patient relapse are common. The environment in which the leukemia cells are present during the drug treatment is known to provide significant survival benefit. Here, we have modeled this process by culturing murine Bcr/Abl-positive acute lymphoblastic leukemia cells in the presence of stroma while treating them with a moderate dose of two unrelated drugs, the farnesyltransferase i...

  19. Mutations in the BCR-ABL1 Kinase Domain and Elsewhere in Chronic Myeloid Leukemia.

    Science.gov (United States)

    Soverini, Simona; de Benedittis, Caterina; Mancini, Manuela; Martinelli, Giovanni

    2015-06-01

    Chronic myeloid leukemia (CML) has been the first human malignancy to be associated, more than 50 years ago, with a consistent chromosomal abnormality--the t(9;22)(q34;q11) chromosomal translocation. The resulting BCR-ABL1 fusion gene, encoding a tyrosine kinase with deregulated activity, has a central role in the pathogenesis of CML. Ancestral or additional genetic events necessary for CML to develop have long been hypothesized but never really demonstrated. CML can successfully be treated with tyrosine kinase inhibitors (TKIs). Mutations in the BCR-ABL1 kinase domain might arise, however, that confer resistance to 1 or more of the currently available TKIs. Hence, the critical role of BCR-ABL1 mutation screening for optimal therapeutic management, with the current gold standard technique, conventional sequencing, likely to be replaced soon by ultra-deep sequencing. Mutations in genes other than BCR-ABL1 include ASXL1, TET2, RUNX1, DNMT3A, EZH2, and TP53 in chronic phase patients and RUNX1, ASXL1, IKZF1, WT1, TET2, NPM1, IDH1, IDH2, NRAS, KRAS, CBL, TP53, CDKN2A, RB1, and GATA-2 mutations in advanced phase patients. The latter also display additional cytogenetic abnormalities, including submicroscopic regions of gain or loss that only single nucleotide polymorphism arrays or array comparative genomic hybridization can detect. Whether whole genome/exome sequencing studies will uncover novel mutations relevant for pathogenesis, progression, and risk-adapted therapy is still unclear. PMID:26297264

  20. A critical role of CDKN3 in Bcr-Abl-mediated tumorigenesis.

    Directory of Open Access Journals (Sweden)

    Qinghuang Chen

    Full Text Available CDKN3 (cyclin-dependent kinase inhibitor 3, a dual specificity protein phosphatase, dephosphorylates cyclin-dependent kinases (CDKs and thus functions as a key negative regulator of cell cycle progression. Deregulation or mutations of CDNK3 have been implicated in various cancers. However, the role of CDKN3 in Bcr-Abl-mediated chronic myelogenous leukemia (CML remains unknown. Here we found that CDKN3 acts as a tumor suppressor in Bcr-Abl-mediated leukemogenesis. Overexpression of CDKN3 sensitized the K562 leukemic cells to imanitib-induced apoptosis and dramatically inhibited K562 xenografted tumor growth in nude mouse model. Ectopic expression of CDKN3 significantly reduced the efficiency of Bcr-Abl-mediated transformation of FDCP1 cells to growth factor independence. In contrast, depletion of CDKN3 expression conferred resistance to imatinib-induced apoptosis in the leukemic cells and accelerated the growth of xenograph leukemia in mice. In addition, we found that CDKN3 mutant (CDKN3-C140S devoid of the phosphatase activity failed to affect the K562 leukemic cell survival and xenografted tumor growth, suggesting that the phosphatase of CDKN3 was required for its tumor suppressor function. Furthermore, we observed that overexpression of CDKN3 reduced the leukemic cell survival by dephosphorylating CDK2, thereby inhibiting CDK2-dependent XIAP expression. Moreover, overexpression of CDKN3 delayed G1/S transition in K562 leukemic cells. Our results highlight the importance of CDKN3 in Bcr-Abl-mediated leukemogenesis, and provide new insights into diagnostics and therapeutics of the leukemia.

  1. Autophagy induction by Bcr-Abl-expressing cells facilitates their recovery from a targeted or nontargeted treatment.

    LENUS (Irish Health Repository)

    Crowley, Lisa C

    2012-01-31

    Although Imatinib has transformed the treatment of chronic myeloid leukemia (CML), it is not curative due to the persistence of resistant cells that can regenerate the disease. We have examined how Bcr-Abl-expressing cells respond to two mechanistically different therapeutic agents, etoposide and Imatinib. We also examined Bcr-Abl expression at low and high levels as elevated expression has been associated with treatment failure. Cells expressing low levels of Bcr-Abl undergo apoptosis in response to the DNA-targeting agent (etoposide), whereas high-Bcr-Abl-expressing cells primarily induce autophagy. Autophagic populations engage a delayed nonapoptotic death; however, sufficient cells evade this and repopulate following the withdrawal of the drug. Non-Bcr-Abl-expressing 32D or Ba\\/F3 cells induce both apoptosis and autophagy in response to etoposide and can recover. Imatinib treatment induces both apoptosis and autophagy in all Bcr-Abl-expressing cells and populations rapidly recover. Inhibition of autophagy with ATG7 and Beclin1 siRNA significantly reduced the recovery of Imatinib-treated K562 cells, indicating the importance of autophagy for the recovery of treated cells. Combination regimes incorporating agents that disrupt Imatinib-induced autophagy would remain primarily targeted and may improve response to the treatment in CML.

  2. CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cells.

    Science.gov (United States)

    Jain, Shweta; Chodisetti, Sathi Babu; Agrewala, Javed N

    2011-01-01

    Conventionally, signaling through BCR initiates sequence of events necessary for activation and differentiation of B cells. We report an alternative approach, independent of BCR, for stimulating resting B (RB) cells, by involving TLR-2 and CD40--molecules crucial for innate and adaptive immunity. CD40 triggering of TLR-2 stimulated RB cells significantly augments their activation, proliferation and differentiation. It also substantially ameliorates the calcium flux, antigen uptake capacity and ability of B cells to activate T cells. The survival of RB cells was improved and it increases the number of cells expressing activation induced deaminase (AID), signifying class switch recombination (CSR). Further, we also observed increased activation rate and decreased threshold period required for optimum stimulation of RB cells. These results corroborate well with microarray gene expression data. This study provides novel insights into coordination between the molecules of innate and adaptive immunity in activating B cells, in a BCR independent manner. This strategy can be exploited to design vaccines to bolster B cell activation and antigen presenting efficiency, leading to faster and better immune response. PMID:21674065

  3. Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias.

    Directory of Open Access Journals (Sweden)

    Yunyi Kang

    Full Text Available The BCR-ABL translocation is found in chronic myeloid leukemia (CML and in Ph+ acute lymphoblastic leukemia (ALL patients. Although imatinib and its analogues have been used as front-line therapy to target this mutation and control the disease for over a decade, resistance to the therapy is still observed and most patients are not cured but need to continue the therapy indefinitely. It is therefore of great importance to find new therapies, possibly as drug combinations, which can overcome drug resistance. In this study, we identified eleven candidate anti-leukemic drugs that might be combined with imatinib, using three approaches: a kinase inhibitor library screen, a gene expression correlation analysis, and literature analysis. We then used an experimental search algorithm to efficiently explore the large space of possible drug and dose combinations and identified drug combinations that selectively kill a BCR-ABL+ leukemic cell line (K562 over a normal fibroblast cell line (IMR-90. Only six iterations of the algorithm were needed to identify very selective drug combinations. The efficacy of the top forty-nine combinations was further confirmed using Ph+ and Ph- ALL patient cells, including imatinib-resistant cells. Collectively, the drug combinations and methods we describe might be a first step towards more effective interventions for leukemia patients, especially those with the BCR-ABL translocation.

  4. CD40 signaling synergizes with TLR-2 in the BCR independent activation of resting B cells.

    Directory of Open Access Journals (Sweden)

    Shweta Jain

    Full Text Available Conventionally, signaling through BCR initiates sequence of events necessary for activation and differentiation of B cells. We report an alternative approach, independent of BCR, for stimulating resting B (RB cells, by involving TLR-2 and CD40--molecules crucial for innate and adaptive immunity. CD40 triggering of TLR-2 stimulated RB cells significantly augments their activation, proliferation and differentiation. It also substantially ameliorates the calcium flux, antigen uptake capacity and ability of B cells to activate T cells. The survival of RB cells was improved and it increases the number of cells expressing activation induced deaminase (AID, signifying class switch recombination (CSR. Further, we also observed increased activation rate and decreased threshold period required for optimum stimulation of RB cells. These results corroborate well with microarray gene expression data. This study provides novel insights into coordination between the molecules of innate and adaptive immunity in activating B cells, in a BCR independent manner. This strategy can be exploited to design vaccines to bolster B cell activation and antigen presenting efficiency, leading to faster and better immune response.

  5. Association of HLA antigens and BCR-ABL transcripts in leukemia patients with the Philadelphia chromosome

    Directory of Open Access Journals (Sweden)

    Daiana Landenberger de Carvalho

    2012-01-01

    Full Text Available OBJECTIVE: This study aimed to verify the association between human leukocyte antigens and the bcr-abl fusion protein resulting from t(9;22(q34;q11 in chronic leukemia myeloid and acute lymphoblastic leukemia patients. METHODS: Forty-seven bcr-abl positive individuals were evaluated. Typing was performed bymicrolymphocytotoxicity and molecular biological methods (human leukocyte antigens Class I and Class II. A control group was obtained from the data of potential bone marrow donors registered in the Brazilian Bone Marrow Donor Registry (REDOME. RESULTS: Positive associations with HLA-A25 and HLA-B18 were found for the b2a2 transcript, as well as a tendency towards a positive association with HLA-B40 and a negative association with HLA-A68. The b3a2 transcript showed positive associations with HLA-B40 and HLA-DRB1*3. CONCLUSION: The negative association between human leukocyte antigens and the BCR-ABL transcript suggests that binding and presentation of peptides derived from the chimeric protein are effective to increase a cytotoxic T lymphocyte response appropriate for the destruction of leukemic cells.

  6. Sequential Scintigraphy in Renal Transplantation

    International Nuclear Information System (INIS)

    Based on experience gained from more than 1600 patients with proved or suspected kidney diseases and on results on extended studies with dogs, sequential scintigraphy was performèd after renal transplantation in dogs. After intravenous injection of 500 μCi. 131I-Hippuran scintiphotos were taken during the first minute with an exposure time of 15 sec each and thereafter with an exposure of 2 min up to at least 16 min.. Several examinations were evaluated digitally. 26 examinations were performed on 11 dogs with homotransplanted kidneys. Immediately after transplantation the renal function was almost normal arid the bladder was filled in due time. At the beginning of rejection the initial uptake of radioactive Hippuran was reduced. The intrarenal transport became delayed; probably the renal extraction rate decreased. Corresponding to the development of an oedema in the transplant the uptake area increased in size. In cases of thrombosis of the main artery there was no evidence of any uptake of radioactivity in the transplant. Similar results were obtained in 41 examinations on 15 persons. Patients with postoperative anuria due to acute tubular necrosis showed still some uptake of radioactivity contrary to those with thrombosis of the renal artery, where no uptake was found. In cases of rejection the most frequent signs were a reduced initial uptake and a delayed intrarenal transport of radioactive Hippuran. Infarction could be detected by a reduced uptake in distinct areas of the transplant. (author)

  7. SGX393 inhibits the CML mutant Bcr-Abl[superscript T315I] and preempts in vitro resistance when combined with nilotinib or dasatinib

    Energy Technology Data Exchange (ETDEWEB)

    O' Hare, Thomas; Eide, Christopher A.; Tyner, Jeffrey W.; Corbin, Amie S.; Wong, Matthew J.; Buchanan, Sean; Holme, Kevin; Jessen, Katayoun A.; Tang, Crystal; Lewis, Hal A.; Romero, Richard D.; Burley, Stephen K.; Deininger, Michael W. (OHSU- Cancer Instit.); (SGX)

    2010-01-12

    Imatinib inhibits Bcr-Abl, the oncogenic tyrosine kinase that causes chronic myeloid leukemia. The second-line inhibitors nilotinib and dasatinib are effective in patients with imatinib resistance resulting from Bcr-Abl kinase domain mutations. Bcr-Abl{sup T315I}, however, is resistant to all Abl kinase inhibitors in clinical use and is emerging as the most frequent cause of salvage therapy failure. SGX393 is a potent inhibitor of native and T315I-mutant Bcr-Abl kinase that blocks the growth of leukemia cell lines and primary hematopoietic cells expressing Bcr-Abl{sup T315I}, with minimal toxicity against Bcr-Abl-negative cell lines or normal bone marrow. A screen for Bcr-Abl mutants emerging in the presence of SGX393 revealed concentration-dependent reduction in the number and range of mutations. Combining SGX393 with nilotinib or dasatinib preempted emergence of resistant subclones, including Bcr-Abl{sup T315I}. These findings suggest that combination of a T315I inhibitor with the current clinically used inhibitors may be useful for reduction of Bcr-Abl mutants in Philadelphia chromosome-positive leukemia.

  8. Inhibitory Effects of Omacetaxine on Leukemic Stem Cells and BCR-ABL-Induced Chronic Myeloid Leukemia and Acute Lymphoblastic Leukemia in Mice

    OpenAIRE

    Chen, Yaoyu; Hu, Yiguo; Michaels, Shawnya; Segal, David; Brown, Dennis; Li, Shaoguang

    2009-01-01

    Omacetaxine mepesuccinate (formerly homoharringtonine) is a molecule with a mechanism of action that is different from tyrosine kinase inhibitors and its activity in chronic myeloid leukemia (CML) seems to be independent of BCR-ABL mutation status. Using BCR-ABL-expressing myelogenous and lymphoid cell lines and mouse models of CML and B cell acute lymphoblastic leukemia (B-ALL) induced by wild type BCR-ABL or T315I mutant-BCR-ABL, we evaluated the inhibitory effects of omacetaxine on CML and...

  9. 食品中46种禁限用合成色素的分级提取净化体系研究%A Study on System of Sequential Extraction and Cleaning of 46 Forbidden and Limited Synthetic Pigments in Food Stuff

    Institute of Scientific and Technical Information of China (English)

    赵延胜; 董英; 张峰; 杨敏莉; 冯峰; 储晓刚

    2012-01-01

    A system of sequential extraction and cleaning coupled with high performance liquid chro-matography (HPLC) by multi-wavelength detection applied to the analysis of 46 synthetic pigments and dyes in food was established. The system of sequential extraction was composed of three grades. In the first grade of extraction, the Sudan dyes were extracted with n-hexane and cleaned effectively by gel permeation chromatography. The recoveries of 8 Sudan dyes were not less than 80%. In the second grade of extraction, most of water-soluble synthetic pigments were extracted with water assisted by acetonitrile. And the recoveries were not less than 60%. In the third grade of extraction, a few of compounds were extracted using methanol and ammonia water whose concentration was 1.0%. And the recoveries were not less than 55%. It was unnecessary to clean up the extract after the second and third grade of extraction. The detection results of samples from markets showed that the system of sequential extraction and cleaning was suitable for the food stuffs contained protein and fat.%建立了46种禁限用合成色素的分级提取净化体系,采用反相液相色谱多波长检测对该体系的效果进行了评价.提取净化体系的第一级采用正己烷振荡提取、凝胶渗透色谱净化,实现了对苏丹类染料的有效提取分离,回收率均大于80%;第二级采用水振荡提取,乙腈辅助提取的手段,实现了对大多数水溶性合成色素及工业染料的提取分离,回收率均大于60%;第三级采用甲醇-氨水振荡提取,可实现对少数极性较强染料的提取分离,回收率均大于55%.经过第二、三级提取后的样品,无需再净化,即可直接进行高效液相色谱分析,提高了分析效率.采用此体系对样品进行合成色素的测定分析,结果表明,本方法对含蛋白质、脂肪类食品基质具有较强的适用性.

  10. Loss of the xeroderma pigmentosum group B protein binding site impairs p210 BCR/ABL1 leukemogenic activity

    International Nuclear Information System (INIS)

    Previous studies have demonstrated that p210 BCR/ABL1 interacts directly with the xeroderma pigmentosum group B (XPB) protein, and that XPB is phosphorylated on tyrosine in cells that express p210 BCR/ABL1. In the current study, we have constructed a p210 BCR/ABL1 mutant that can no longer bind to XPB. The mutant has normal kinase activity and interacts with GRB2, but can no longer phosphorylate XPB. Loss of XPB binding is associated with reduced expression of c-MYC and reduced transforming potential in ex-vivo clonogenicity assays, but does not affect nucleotide excision repair in lymphoid or myeloid cells. When examined in a bone marrow transplantation (BMT) model for chronic myelogenous leukemia, mice that express the mutant exhibit attenuated myeloproliferation and lymphoproliferation when compared with mice that express unmodified p210 BCR/ABL1. Thus, the mutant-transplanted mice show predominantly neutrophilic expansion and altered progenitor expansion, and have significantly extended lifespans. This was confirmed in a BMT model for B-cell acute lymphoblastic leukemia, wherein the majority of the mutant-transplanted mice remain disease free. These results suggest that the interaction between p210 BCR/ABL1 and XPB can contribute to disease progression by influencing the lineage commitment of lymphoid and myeloid progenitors

  11. Molecular Imaging of Bcr-Abl Phosphokinase in a Xenograft Model*

    OpenAIRE

    Wu, Ji Yuan; Yang, David J.; Angelo, Laura S.; Kohanim, Saady; Kurzrock, Razelle

    2009-01-01

    The purpose of this study was to determine whether the Bcr-Abl tyrosine kinase can be assessed by gamma imaging using an 111Indium-labeled anti-phosphotyrosine antibody, and if the response to treatment with imatinib could be detected using this imaging technique. Anti-phosphotyrosine antibody (APT) was labeled with indium (111In) using ethylenedicysteine (EC) as a chelator. To determine if 111In-EC-APT could assess a non-receptor tyrosine kinase, xenografts of the human chronic myelogenous l...

  12. Strong amorphization of high-entropy AlBCrSiTi nitride film

    International Nuclear Information System (INIS)

    Amorphous coatings, particular nitride systems, are of interest for numerous practical applications. Nevertheless, at present only a few amorphous nitride coating systems have been considered, the most notably being the (TM, Si)N system (transition metal (TM) = Ti, Zr, W, Mo). The present study provides an alternative approach for producing amorphous nitride films with high thermal stability up to 700 °C for 2 h. Films are deposited from an equimolar AlBCrSiTi target in various argon/nitrogen atmospheres at different substrate temperatures. It is found that above the nitrogen flow ratio (i.e. RN = N2/N2 + Ar) of 28.6% a near equal ratio between target elements and nitrogen is approached, thus indicating the coatings have the chemical formula of (AlBCrSiTi)N. The glancing-angle X-ray diffractometer and transmission electron microscope investigations indicate that the coatings, regardless of nitrogen concentration or deposition temperature (up to 500 °C), are amorphous. Thermal treatment shows that the amorphous structure of this (AlBCrSiTi)N coating is maintained up to 700 °C when annealing for 2 h in vacuum. At annealing temperatures of 800 °C and above, the amorphous films transform into a simple NaCl-type face-centered cubic solid solution. Even after annealing at 1000 °C for 2 h, the grain size is only 2 nm. High entropy effect, large lattice distortion effect, and sluggish diffusion effect are proposed to account for the formation of amorphous nitrides. - Highlights: ► Films are deposited from an equimolar AlBCrSiTi target in various argon/nitrogen atmospheres at different substrate temperatures. ► We provide an alternative approach for producing amorphous nitride films with high thermal stability up to 700 oC for 2 h. ► At annealing temperatures of 800 oC and above, the amorphous films transform into a simple NaCl-type face-centered cubic solid solution. ► Even after annealing at 1000 °C for 2 h, the grain size is only 2 nm.

  13. Continuity of the sequential product of sequential quantum effect algebras

    Science.gov (United States)

    Lei, Qiang; Su, Xiaochao; Wu, Junde

    2016-04-01

    In order to study quantum measurement theory, sequential product defined by A∘B = A1/2BA1/2 for any two quantum effects A, B has been introduced. Physically motivated conditions ask the sequential product to be continuous with respect to the strong operator topology. In this paper, we study the continuity problems of the sequential product A∘B = A1/2BA1/2 with respect to other important topologies, such as norm topology, weak operator topology, order topology, and interval topology.

  14. Mining Frequent Max and Closed Sequential Patterns

    OpenAIRE

    Afshar, Ramin

    2002-01-01

    Although frequent sequential pattern mining has an important role in many data mining tasks, however, it often generates a large number of sequential patterns, which reduces its efficiency and effectiveness. For many applications mining all the frequent sequential patterns is not necessary, and mining frequent Max, or Closed sequential patterns will provide the same amount of information. Comparing to frequent sequential pattern mining, frequent Max, or Closed sequential pattern mining g...

  15. Distinct GAB2 signaling pathways are essential for myeloid and lymphoid transformation and leukemogenesis by BCR-ABL1.

    Science.gov (United States)

    Gu, Shengqing; Chan, Wayne W; Mohi, Golam; Rosenbaum, Joel; Sayad, Azin; Lu, Zhibin; Virtanen, Carl; Li, Shaoguang; Neel, Benjamin G; Van Etten, Richard A

    2016-04-01

    Tyrosine kinase inhibitors (TKIs) directed against BCR-ABL1, the product of the Philadelphia (Ph) chromosome, have revolutionized treatment of patients with chronic myeloid leukemia (CML). However, acquired resistance to TKIs is a significant clinical problem in CML, and TKI therapy is much less effective against Ph(+)B-cell acute lymphoblastic leukemia (B-ALL). BCR-ABL1, via phosphorylated Tyr177, recruits the adapter GRB2-associated binding protein 2 (GAB2) as part of a GRB2/GAB2 complex. We showed previously that GAB2 is essential for BCR-ABL1-evoked myeloid transformation in vitro. Using a genetic strategy and mouse models of CML and B-ALL, we show here that GAB2 is essential for myeloid and lymphoid leukemogenesis by BCR-ABL1. In the mouse model, recipients of BCR-ABL1-transducedGab2(-/-)bone marrow failed to develop CML-like myeloproliferative neoplasia. Leukemogenesis was restored by expression of GAB2 but not by GAB2 mutants lacking binding sites for its effectors phosphatidylinositol 3-kinase (PI3K) or SRC homology 2-containing phosphotyrosine phosphatase 2 (SHP2). GAB2 deficiency also attenuated BCR-ABL1-induced B-ALL, but only the SHP2 binding site was required. The SHP2 and PI3K binding sites were differentially required for signaling downstream of GAB2. Hence, GAB2 transmits critical transforming signals from Tyr177 to PI3K and SHP2 for CML pathogenesis, whereas only the GAB2-SHP2 pathway is essential for lymphoid leukemogenesis. Given that GAB2 is dispensable for normal hematopoiesis, GAB2 and its effectors PI3K and SHP2 represent promising targets for therapy in Ph(+)hematologic neoplasms. PMID:26773044

  16. The Role of MEK Kinase 1 in Bcr-Abl-Induced Self-Renewal Activity of Embryonic Stem Cells

    OpenAIRE

    NAKAMURA, Yukinori; Yujiri, Toshiaki; Tanizawa, Yukio

    2006-01-01

    BCR-ABL oncogene, the moecular hallmark of chronic mylogenous leukemia, arises in a promitive hematopoietic stem cell that has the capacity for both differentiation and self-renewal. Its product, Bcr-Abl protein, has been shown to sctivate signal transducers and activators of transcription 3 (STAT3) and to promote self-renewal in embryonic stem (ES)cells, even in the absencs of leukemia in hibitory factor (LIF). MEK kinase 1 (MEKK1) is a 196-kDa mitogen-activated protein kinase (MAPK) kinase ...

  17. Association of HLA Class I and Class II genes with bcr-abl transcripts in leukemia patients with t(9;22 (q34;q11

    Directory of Open Access Journals (Sweden)

    Cano Pedro

    2004-06-01

    Full Text Available Abstract Background Based on the site of breakpoint in t(9;22 (q34;q11, bcr-abl fusion in leukemia patients is associated with different types of transcript proteins. In this study we have seen the association of HLA genes with different types of bcr-abl transcripts. The association could predict the bcr-abl peptide presentation by particular HLA molecules. Methods The study included a total of 189 patients of mixed ethnicity with chronic myelogenous leukemia and acute lymphocytic leukemia who were being considered for bone marrow transplantation. Typing of bcr-abl transcripts was done by reverse transcriptase PCR method. HLA typing was performed by molecular methods. The bcr-abl and HLA association was studied by calculating the relative risks and chi-square test. Results Significant negative associations (p Conclusions The negative associations of a particular bcr-abl transcript with specific HLA alleles suggests that these alleles play a critical role in presenting peptides derived from the chimeric proteins and eliciting a successful T-cell cytotoxic response. Knowledge of differential associations between HLA phenotypes and bcr-abl fusion transcript types would help in developing better strategies for immunization with the bcr-abl peptides against t(9;22 (q34;q11-positive leukemia.

  18. Sequential operators in computability logic

    CERN Document Server

    Japaridze, Giorgi

    2007-01-01

    Computability logic (CL) (see http://www.cis.upenn.edu/~giorgi/cl.html) is a semantical platform and research program for redeveloping logic as a formal theory of computability, as opposed to the formal theory of truth which it has more traditionally been. Formulas in CL stand for (interactive) computational problems, understood as games between a machine and its environment; logical operators represent operations on such entities; and "truth" is understood as existence of an effective solution, i.e., of an algorithmic winning strategy. The formalism of CL is open-ended, and may undergo series of extensions as the study of the subject advances. The main groups of operators on which CL has been focused so far are the parallel, choice, branching, and blind operators. The present paper introduces a new important group of operators, called sequential. The latter come in the form of sequential conjunction and disjunction, sequential quantifiers, and sequential recurrences. As the name may suggest, the algorithmic ...

  19. Sequentially pulsed traveling wave accelerator

    Science.gov (United States)

    Caporaso, George J.; Nelson, Scott D.; Poole, Brian R.

    2009-08-18

    A sequentially pulsed traveling wave compact accelerator having two or more pulse forming lines each with a switch for producing a short acceleration pulse along a short length of a beam tube, and a trigger mechanism for sequentially triggering the switches so that a traveling axial electric field is produced along the beam tube in synchronism with an axially traversing pulsed beam of charged particles to serially impart energy to the particle beam.

  20. Venture Capital and Sequential Investments

    OpenAIRE

    Dirk Bergemann; Ulrich Hege; Liang Peng

    2008-01-01

    We present a dynamic model of venture capital financing, described as a sequential investment problem with uncertain outcome. Each venture has a critical, but unknown threshold beyond which it cannot progress. If the threshold is reached before the completion of the project, then the project fails, otherwise it succeeds. The investors decide sequentially about the speed of the investment and the optimal path of staged investments. We derive the dynamically optimal funding policy in response t...

  1. Venture Capital and Sequential Investments

    OpenAIRE

    Dirk Bergemann; Ulrich Hege; Liang Peng

    2008-01-01

    We present a dynamic model of venture capital financing, described as a sequential in­vestment problem with uncertain outcome. Each venture has a critical, but unknown threshold beyond which it cannot progress. If the threshold is reached before the completion of the project, then the project fails, otherwise it succeeds. The investors decide sequentially about the speed of the investment and the optimal path of staged investments. We derive the dynamically optimal funding policy in response ...

  2. Extractable Fractions of Metals in Sewage Sludges from Five Typical Urban Wastewater Treatment Plants of China

    Institute of Scientific and Technical Information of China (English)

    WANG Chao; LI Xiao-Chen; WANG Pei-Fang; ZOU Li-Min; MA Hai-Tao

    2006-01-01

    Metal content and bioavailability are often the limiting factors for application of sewage sludge in agricultural fields.Sewage sludge samples were collected from five typical urban wastewater treatment plants in China to investigate their contents and distribution of various chemical fractions of Cu, Zn, Ni, Cr, Pb and Mo by using the BCR (Community Bureau of Reference) sequential extraction procedure. The sludges contained considerable amounts of organic matter (31.8%-48.0%), total N (16.3-26.4 g kg-1) and total P (15.1-23.9 g kg-1), indicating high potential agricultural benefits of their practical applications. However, total Zn and Ni contents in the sludge exceeded the values permitted in China's control standards for pollutants in sludges from agricultural use (GB 4284-1984). The residual fraction was the predominant fraction for Mo, Ni and Cr, the oxidizable fraction was the primary fraction for Cu and Pb, and the exchangeable and reducible fractions were principal for Zn. The distribution of different chemical fractions among the sludge samples reflected differences in their physicochemical properties, especially pH. The sludge pH was negatively correlated with the percentages of reducible fraction of Cu and exchangeable fraction of Zn. The sludges from these plants might not be suitable for agricultural applications due to their high contents of Zn, Ni and Cr, as well as high potential of mobility and bioavailability of Zn.

  3. WT1-mediated repression of the proapoptotic transcription factor ZNF224 is triggered by the BCR-ABL oncogene

    Science.gov (United States)

    Montano, Giorgia; Vidovic, Karina; Palladino, Chiara; Cesaro, Elena; Sodaro, Gaetano; Quintarelli, Concetta; De Angelis, Biagio; Errichiello, Santa; Pane, Fabrizio; Izzo, Paola; Grosso, Michela; Gullberg, Urban; Costanzo, Paola

    2015-01-01

    The Kruppel-like protein ZNF224 is a co-factor of the Wilms’ tumor 1 protein, WT1. We have previously shown that ZNF224 exerts a specific proapoptotic role in chronic myelogenous leukemia (CML) K562 cells and contributes to cytosine arabinoside-induced apoptosis, by modulating WT1-dependent transcription of apoptotic genes. Here we demonstrate that ZNF224 gene expression is down-regulated both in BCR-ABL positive cell lines and in primary CML samples and is restored after imatinib and second generation tyrosine kinase inhibitors treatment. We also show that WT1, whose expression is positively regulated by BCR-ABL, represses transcription of the ZNF224 gene. Finally, we report that ZNF224 is significantly down-regulated in patients with BCR-ABL positive chronic phase-CML showing poor response or resistance to imatinib treatment as compared to high-responder patients. Taken as a whole, our data disclose a novel pathway activated by BCR-ABL that leads to inhibition of apoptosis through the ZNF224 repression. ZNF224 could thus represent a novel promising therapeutic target in CML. PMID:26320177

  4. A multiple reaction monitoring (MRM method to detect Bcr-Abl kinase activity in CML using a peptide biosensor.

    Directory of Open Access Journals (Sweden)

    Tzu-Yi Yang

    Full Text Available The protein kinase Bcr-Abl plays a major role in the pathogenesis of chronic myelogenous leukemia (CML, and is the target of the breakthrough drug imatinib (Gleevec™. While most patients respond well to imatinib, approximately 30% never achieve remission or develop resistance within 1-5 years of starting imatinib treatment. Evidence from clinical studies suggests that achieving at least 50% inhibition of a patient's Bcr-Abl kinase activity (relative to their level at diagnosis is associated with improved patient outcomes, including reduced occurrence of resistance and longer maintenance of remission. Accordingly, sensitive assays for detecting Bcr-Abl kinase activity compatible with small amounts of patient material are desirable as potential companion diagnostics for imatinib. Here we report the detection of Bcr-Abl activity and inhibition by imatinib in the human CML cell line K562 using a cell-penetrating peptide biosensor and multiple reaction monitoring (MRM on a triple quadrupole mass spectrometer. MRM enabled reproducible, selective detection of the peptide biosensor at fmol levels from aliquots of cell lysate equivalent to ~15,000 cells. This degree of sensitivity will facilitate the miniaturization of the entire assay procedure down to cell numbers approaching 15,000, making it practical for translational applications in patient cells in which the limited amount of available patient material often presents a major challenge.

  5. Remarks on sequential designs in risk assessment

    International Nuclear Information System (INIS)

    The special merits of sequential designs are reviewed in light of particular challenges that attend risk assessment for human population. The kinds of ''statistical inference'' are distinguished and the problem of design which is pursued is the clash between Neyman-Pearson and Bayesian programs of sequential design. The value of sequential designs is discussed and the Neyman-Pearson vs. Bayesian sequential designs are probed in particular. Finally, warnings with sequential designs are considered, especially in relation to utilitarianism

  6. Effects of austenitization temperature on the microstructure of 15BCr30 and PL22 boron steels

    Directory of Open Access Journals (Sweden)

    C. A. Suski

    2013-01-01

    Full Text Available This paper studies boron precipitation and segregation at austenitic grain boundaries for low carbon boron steels types: PL22 and 15BCr30. The following parameters were evaluated: percentage of martensite/bainite, size and nucleation sites of austenitic grains and precipitates sizes. Three austenitization temperatures were studied (870, 1050 and 1200 °C. The highest martensite percentage occurred for 1050 °C. Iron-borocarbides were detected at grain boundaries for all tested temperatures. At 870 °C the coarse iron-borocarbides are due to non-solubility and coalescence. The highest martensite percentage at 1050 °C is caused by the discrete precipitation of iron-borocarbides at austenitic grains boundaries. The discrete precipitation was due to the low non-equilibrium segregation of boron at grain boundaries. The low non-equilibrium segregation and the small grain size at 1050 °C reduce the total boron concentration at grain boundaries.

  7. Cytoprotective effect of imatinib mesylate in non-BCR-ABL-expressing cells along with autophagosome formation

    Energy Technology Data Exchange (ETDEWEB)

    Ohtomo, Tadashi [Department of Biochemistry, Tokyo Medical University, Tokyo (Japan); Miyazawa, Keisuke, E-mail: miyazawa@tokyo-med.ac.jp [Department of Biochemistry, Tokyo Medical University, Tokyo (Japan); Naito, Munekazu [Department of Anatomy, Tokyo Medical University, Tokyo (Japan); Moriya, Shota [Department of Biochemistry, Tokyo Medical University, Tokyo (Japan); Kuroda, Masahiko [Department of Molecular Pathology, Tokyo Medical University, Tokyo (Japan); Itoh, Masahiro [Department of Anatomy, Tokyo Medical University, Tokyo (Japan); Tomoda, Akio [Department of Biochemistry, Tokyo Medical University, Tokyo (Japan)

    2010-01-01

    Treatment with imatinib mesylate (IM) results in an increased viable cell number of non-BCR-ABL-expressing cell lines by inhibiting spontaneous apoptosis. Electron microscopy revealed an increase of autophagosomes in response to IM. IM attenuated the cytotoxic effect of cytosine arabinoside, as well as inhibiting cell death with serum-deprived culture. Cytoprotection with autophagosome formation by IM was observed in various leukemia and cancer cell lines as well as normal murine embryonic fibroblasts (MEFs). Complete inhibition of autophagy by knockdown of atg5 in the Tet-off atg5{sup -/-} MEF system attenuated the cytoprotective effect of IM, indicating that the effect is partially dependent on autophagy. However, cytoprotection by IM was not mediated through suppression of ROS production via mitophagy, ER stress via ribophagy, or proapoptotic function of ABL kinase. Although the target tyrosine kinase(s) of IM remains unclear, our data provide novel therapeutic possibilities of using IM for cytoprotection.

  8. Chibby drives β catenin cytoplasmic accumulation leading to activation of the unfolded protein response in BCR-ABL1+ cells.

    Science.gov (United States)

    Mancini, Manuela; Leo, Elisa; Takemaru, Ken-Ichi; Campi, Virginia; Borsi, Enrica; Castagnetti, Fausto; Gugliotta, Gabriele; Santucci, Maria Alessandra; Martinelli, Giovanni

    2013-09-01

    Chronic myeloid leukemia (CML) is a myeloproliferative disease caused by the constitutive tyrosine kinase (TK) activity of the BCR-ABL fusion protein. However, the phenotype of leukemic stem cells (LSC) is sustained by β catenin rather than by the BCR-ABL TK. β catenin activity in CML is contingent upon its stabilization proceeding from the BCR-ABL-induced phosphorylation at critical residues for interaction with the Adenomatous polyposis coli (APC)/Axin/glycogen synthase kinase 3 (GSK3) destruction complex or GSK3 inactivating mutations. Here we studied the impact of β catenin antagonist Chibby (CBY) on β catenin signaling in BCR-ABL1+ cells. CBY is a small conserved protein which interacts with β catenin and impairs β catenin-mediated transcriptional activation through two distinct molecular mechanisms: 1) competition with T cell factor (TCF) or lymphoid enhancer factor (LEF) for β catenin binding; and 2) nuclear export of β catenin via interaction with 14-3-3. We found that its enforced expression in K562 cell line promoted β catenin cytoplasmic translocation resulting in inhibition of target gene transcription. Moreover, cytoplasmic accumulation of β catenin activated the endoplasmic reticulum (ER) stress-associated pathway known as unfolded protein response (UPR). CBY-driven cytoplasmic accumulation of β catenin is also a component of BCR-ABL1+ cell response to the TK inhibitor Imatinib (IM). It evoked the UPR activation leading to the induction of BCL2-interacting mediator of cell death (BIM) by UPR sensors. BIM, in turn, contributed to the execution phase of apoptosis in the activation of ER resident caspase 12 and mobilization of Ca(2+) stores. PMID:23707389

  9. A bit serial sequential circuit

    Science.gov (United States)

    Hu, S.; Whitaker, S.

    1990-01-01

    Normally a sequential circuit with n state variables consists of n unique hardware realizations, one for each state variable. All variables are processed in parallel. This paper introduces a new sequential circuit architecture that allows the state variables to be realized in a serial manner using only one next state logic circuit. The action of processing the state variables in a serial manner has never been addressed before. This paper presents a general design procedure for circuit construction and initialization. Utilizing pass transistors to form the combinational next state forming logic in synchronous sequential machines, a bit serial state machine can be realized with a single NMOS pass transistor network connected to shift registers. The bit serial state machine occupies less area than other realizations which perform parallel operations. Moreover, the logical circuit of the bit serial state machine can be modified by simply changing the circuit input matrix to develop an adaptive state machine.

  10. Effect of humic acid on the underpotential deposition-stripping voltammetry of copper in acetic acid soil extract solutions at mercaptoacetic acid-modified gold electrodes

    International Nuclear Information System (INIS)

    Electrochemical measurements were undertaken for the investigation of the underpotential deposition-stripping process of copper at bare and modified gold electrodes in 0.11 M acetic acid, the first fraction of the European Union's Bureau Communautaire de References (BCR) sequential extraction procedure for fractionating metals within soils and sediments. Gold electrodes modified with mercaptoacetic acid showed higher sensitivity for the detection of copper than bare gold electrodes, both in the absence and in the presence of humic acid in acetic acid solutions, using the underpotential deposition-stripping voltammetry (UPD-SV) method. In the presence of 50 mg l-1 of humic acid, the mercaptoacetic acid modified electrode proved to be 1.5 times more sensitive than the bare gold electrode. The mercaptoacetic acid monolayer formed on the gold surface provided efficient protection against the adsorption of humic acid onto the gold electrode surface. Variation of the humic acid concentration in the solution showed little effect on the copper stripping signal at the modified electrode. UPD-SV at the modified electrode was applied to the analysis of soil extract samples. Linear correlation of the electrochemical results with atomic spectroscopic results yielded the straight-line equation y (μg l-1) = 1.10x - 44 (ppb) (R=0.992, n=6), indicating good agreement between the two methods

  11. Random sequential packing of cubes

    CERN Document Server

    Sikiric, Mathieu Dutour

    2011-01-01

    In this volume very simplified models are introduced to understand the random sequential packing models mathematically. The 1-dimensional model is sometimes called the Parking Problem, which is known by the pioneering works by Flory (1939), Renyi (1958), Dvoretzky and Robbins (1962). To obtain a 1-dimensional packing density, distribution of the minimum of gaps, etc., the classical analysis has to be studied. The packing density of the general multi-dimensional random sequential packing of cubes (hypercubes) makes a well-known unsolved problem. The experimental analysis is usually applied to t

  12. Sequential logic analysis and synthesis

    CERN Document Server

    Cavanagh, Joseph

    2007-01-01

    Until now, there was no single resource for actual digital system design. Using both basic and advanced concepts, Sequential Logic: Analysis and Synthesis offers a thorough exposition of the analysis and synthesis of both synchronous and asynchronous sequential machines. With 25 years of experience in designing computing equipment, the author stresses the practical design of state machines. He clearly delineates each step of the structured and rigorous design principles that can be applied to practical applications. The book begins by reviewing the analysis of combinatorial logic and Boolean a

  13. Sequential tests for failure detection

    International Nuclear Information System (INIS)

    The problem of constructing sequential tests for fault detection methods that are based on the concept of Mahalanobis distance is addressed. First the distribution of the Mahalanobis distance that belongs to the degraded (alternative) state of a multivariate system is determined. Then three sequential tests are constructed and their performance investigated for fault detection. For each test, the average sample number and an upper limit for the number of samples necessary so that the test will terminate with a given probability are calculated. (author)

  14. MEK kinase 1 is essential for Bcr-Abl-induced STAT3 and self-renewal activity in embryonic stem cells.

    Science.gov (United States)

    Nakamura, Yukinori; Yujiri, Toshiaki; Nawata, Ryouhei; Tagami, Kozo; Tanizawa, Yukio

    2005-11-17

    BCR-ABL oncogene, the molecular hallmark of chronic myelogenous leukemia, arises in a primitive hematopoietic stem cell that has the capacity for both differentiation and self-renewal. Its product, Bcr-Abl protein, has been shown to activate signal transducers and activators of transcription 3 (STAT3) and to promote self-renewal in embryonic stem (ES) cells, even in the absence of leukemia inhibitory factor (LIF). MEK kinase 1 (MEKK1) is a 196-kDa mitogen-activated protein kinase (MAPK) kinase kinase involved in Bcr-Abl signal transduction. To investigate the role of MEKK1 in Bcr-Abl-induced transformation of stem cells, p210 Bcr-Abl was stably transfected into wild-type (WT(p210)) and MEKK1-/- (MEKK1-/-(p210)) ES cells. Bcr-Abl enhanced MEKK1 expression in ES transfectants, as it does in other Bcr-Abl-transformed cells. In the absence of LIF, WT(p210) cells showed constitutive STAT3 activation and formed rounded, compact colonies having strong alkaline phosphatase activity, a characteristic phenotype of undifferentiated ES cells. MEKK1-/-(p210) cells, by contrast, showed less STAT3 activity than WT(p210) cells and formed large, flattened colonies having weak alkaline phosphatase activity, a phenotype of differentiated ES cells. These results indicate that MEKK1 plays a key role in Bcr-Abl-induced STAT3 activation and in ES cells' capacity for LIF-independent self-renewal, and may thus be involved in Bcr-Abl-mediated leukemogenesis in stem cells. PMID:16044153

  15. A certified plasmid reference material for the standardisation of BCR-ABL1 mRNA quantification by real-time quantitative PCR

    OpenAIRE

    White, Helen; DEPREZ LIESBET; Corbisier, Philippe; HALL Victoria; Lin, Feng; Mazoua, Stephane; TRAPMANN Stefanie; AGGERHOLM Annie; Andrikovics, Hajnalka; AKIKI Susanna; Barbany, Gisela; Boeckx, Nancy; Bench, Anthony; CATHERWOOD Mark; Cayuela, Jean-Michel

    2014-01-01

    Serial quantification of BCR-ABL1 mRNA is an important therapeutic indicator in chronic myeloid leukaemia, but there is a substantial variation in results reported by different laboratories. To improve comparability, an internationally accepted plasmid certified reference material (CRM) was developed according to ISO Guide 34:2009. Fragments of BCR-ABL1 (e14a2 mRNA fusion), BCR and GUSB transcripts were amplified and cloned into pUC18 to yield plasmid pIRMM0099. Six different linearised plasm...

  16. DMPD: Mechanisms of selection mediated by interleukin-7, the preBCR, and hemokinin-1during B-cell development. [Dynamic Macrophage Pathway CSML Database

    Lifescience Database Archive (English)

    Full Text Available ated by interleukin-7, the preBCR, and hemokinin-1during B-cell development. Authors Milne CD, Fleming HE, Z...ng) (.svg) (.html) (.csml) Show Mechanisms of selection mediated by interleukin-7, the preBCR, and hemokinin-1during B-cell developme...14962188 Mechanisms of selection mediated by interleukin-7, the preBCR, and hemokinin-1during B-cell develop...ment. Milne CD, Fleming HE, Zhang Y, Paige CJ. Immunol Rev. 2004 Feb;197:75-88. (.p...nt. PubmedID 14962188 Title Mechanisms of selection medi

  17. High risk acute lymphoblastic leukemia cells with bcr-abl and INK4A/ARF mutations retain susceptibility to alloreactive T cells

    OpenAIRE

    Young, Faith M.; Campbell, Andrew; Emo, Kris Lambert; Jansson, Johan; Wang, Pin-Yi; Jordan, Craig T.; Mullen, Craig A.

    2008-01-01

    INK4A/ARF mutations are acquired in bcr/abl+ lymphoid blast phase chronic myelogenous leukemia (CML) and bcr/abl+ acute lymphoblastic leukemia (ALL). Donor lymphocyte infusion and graft versus leukemia are generally ineffective in such ALL’s, while GVL is highly active against bcr/abl+ CML that does not have a lesion in the INK4A/ARF locus. The mechanisms for the ineffectiveness of GVL are not fully known and it is possible that intrinsic resistance of acute lymphoid leukemias to immune effec...

  18. Steganography Based on Baseline Sequential JPEG Compression

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Information hiding in Joint Photographic Experts Group (JPEG) compressed images are investigated in this paper. Quantization is the source of information loss in JPEG compression process. Therefore, information hidden in images is probably destroyed by JPEG compression. This paper presents an algorithm to reliably embed information into the JPEG bit streams in the process of JPEG encoding. Information extraction is performed in the process of JPEG decoding. The basic idea of our algorithm is to modify the quantized direct current (DC) coefficients and non-zero alternating current (AC) coefficients to represent one bit information (0 or 1). Experimental results on gray images using baseline sequential JPEG encoding show that the cover images (images without secret information) and the stego-images (images with secret information) are perceptually indiscernible.

  19. Preliminary validation of a sequential fractionation method to study phosphorus chemistry in a calcareous soil.

    Science.gov (United States)

    Audette, Yuki; O'Halloran, Ivan P; Evans, Les J; Voroney, R Paul

    2016-06-01

    A sequential fractionation method proposed by Jiang and Gu (1989) distinguished three types of calcium phosphates (Ca-P) according to their different plant availabilities. Three extractants, NaHCO3, NH4Ac, and H2SO4 were used to extract Ca2-P, Ca8-P, and Ca10-P types, respectively, from soil. This sequential fractionation method was tested and modified for analyzing the P chemistry of a calcareous soil. The solubility test and the model diagrams of the stability of the major Ca-P minerals showed that NaHCO3 was able to extract brushite (Ca2-P type), and NH4Ac extracted brushite and β-tricalcium P (Ca8-P type) as well as hydroxyapatite (Ca10-P type). Therefore the P forms targeted by extraction with NH4Ac should include both Ca8-and Ca10-P types. The sum of the P extracted by all extractants in the sequential fractionation method in the calcareous soil was in agreement with the total P measured by the perchloric acid digestion method. A proportion of organic P measured by the sequential fractionation method was in agreement with the result from solution (31)P NMR spectroscopy. This study showed that the modified sequential fractionation method and its target P forms would be useful for quantifying and characterizing inorganic and organic P in a calcareous soil, even though it should be used in combination with other techniques, such as solution (31)P NMR spectroscopy. PMID:26994430

  20. Sequential PTA of abdominal aorta

    International Nuclear Information System (INIS)

    A case of sequential dilatation of a subtotal stenosis of the abdominal aorta in a young subject is reported. Initial and long-term success of the procedure is recorded using haemodynamic evaluation and intravenous digital subtraction angiography (IV-DSA) follow-up on an outpatient basis. In addition, the significance of biplane aortography with IV-DSA is illustrated. (orig.)

  1. Sequential versus simultaneous market delineation

    DEFF Research Database (Denmark)

    Haldrup, Niels; Møllgaard, Peter; Kastberg Nielsen, Claus

    2005-01-01

    geographical markets. Using a unique data setfor prices of Norwegian and Scottish salmon, we propose a methodologyfor simultaneous market delineation and we demonstrate that comparedto a sequential approach conclusions will be reversed.JEL: C3, K21, L41, Q22Keywords: Relevant market, econometric delineation...

  2. Sequential Beamforming Synthetic Aperture Imaging

    DEFF Research Database (Denmark)

    Kortbek, Jacob; Jensen, Jørgen Arendt; Gammelmark, Kim Løkke

    2013-01-01

    Synthetic aperture sequential beamforming (SASB) is a novel technique which allows to implement synthetic aperture beamforming on a system with a restricted complexity, and without storing RF-data. The objective is to improve lateral resolution and obtain a more depth independent resolution...

  3. Arabinose and ferulic acid rich pectic polysaccharides extracted from sugar beet pulp.

    NARCIS (Netherlands)

    Oosterveld, A.; Beldman, G.; Schols, H.A.; Voragen, A.G.J.

    1996-01-01

    Arabinose and ferulic acid rich polysaccharides were extracted from sugar beet pulp using two extraction methods: a sequential extraction with H2O (2 times), NaOH/EDTA (2 times), and 4 M NaOH (2 times; method A) and a sequential extraction in which the NaOH/EDTA extraction was replaced by an autocla

  4. Sequential Pattern Mining for Uncertain Data Streams using Sequential Sketch

    OpenAIRE

    Jingyu Chen; Ping Chen

    2014-01-01

    Uncertainty is inherent in data streams, and present new challenges to data streams mining. For continuous arriving and large size of data streams, modeling sequences of uncertain time series data streams require significantly more space. Therefore, it is important to construct compressed representation for storing uncertain time series data. Based on granules, sequential sketches are created to store hash-compressed granules. And based on sliding windows, a sketch update strategy is given to...

  5. Ibrutinib inhibits BCR and NF-κB signaling and reduces tumor proliferation in tissue-resident cells of patients with CLL

    OpenAIRE

    Herman, Sarah E. M.; Mustafa, Rashida Z.; Gyamfi, Jennifer A.; Pittaluga, Stefania; Chang, Stella; Chang, Betty; Farooqui, Mohammed; Wiestner, Adrian

    2014-01-01

    Ibrutinib inhibits both BCR and NF-κB signaling in lymph node and bone marrow resident CLL cells.Rapid and sustained reduction of cellular activation and tumor proliferation was achieved in all anatomic compartments.

  6. A Sequential Procedure for Individual Identity Verification Using ECG

    OpenAIRE

    Irvine, John M.; Israel, Steven A.

    2009-01-01

    The electrocardiogram (ECG) is an emerging novel biometric for human identification. One challenge for the practical use of ECG as a biometric is minimizing the time needed to acquire user data. We present a methodology for identity verification that quantifies the minimum number of heartbeats required to authenticate an enrolled individual. The approach rests on the statistical theory of sequential procedures. The procedure extracts fiducial features from each heartbeat to compute the test s...

  7. Association of HLA Class I and Class II genes with bcr-abl transcripts in leukemia patients with t(9;22) (q34;q11)

    International Nuclear Information System (INIS)

    Based on the site of breakpoint in t(9;22) (q34;q11), bcr-abl fusion in leukemia patients is associated with different types of transcript proteins. In this study we have seen the association of HLA genes with different types of bcr-abl transcripts. The association could predict the bcr-abl peptide presentation by particular HLA molecules. The study included a total of 189 patients of mixed ethnicity with chronic myelogenous leukemia and acute lymphocytic leukemia who were being considered for bone marrow transplantation. Typing of bcr-abl transcripts was done by reverse transcriptase PCR method. HLA typing was performed by molecular methods. The bcr-abl and HLA association was studied by calculating the relative risks and chi-square test. Significant negative associations (p < 0.05) were observed with HLA-A*02 (b2a2, e1a2), -A*68 (b2a2, b3a2, e1a2), -B*14 (b2a2, b3a2, e1a2), -B*15 (b2a2, b3a2), -B*40 (b2a2), -DQB1*0303 (b2a2, b3a2), -DQB1*0603 (b2a2), -DRB1*0401 (e1a2), -DRB1*0701 (b3a2), and -DRB1*1101 (b2a2). The negative associations of a particular bcr-abl transcript with specific HLA alleles suggests that these alleles play a critical role in presenting peptides derived from the chimeric proteins and eliciting a successful T-cell cytotoxic response. Knowledge of differential associations between HLA phenotypes and bcr-abl fusion transcript types would help in developing better strategies for immunization with the bcr-abl peptides against t(9;22) (q34;q11)-positive leukemia

  8. Curcumin synergistically augments bcr/abl phosphorethieate antisense oligonucleotides to inhibit growth of chronic myelogenous leukemia cells

    Institute of Scientific and Technical Information of China (English)

    Kun-zhong ZHANG; Jian-hua XU; Xiu-wang HUANG; Li-xian WU; Yu SU; Yuan-zhong CHEN

    2007-01-01

    Aim: To investigate the growth inhibition effect of the combination of bcr/abl phosphorothioate antisense oligonucleotides (PS-ASODN) and curcumin (cur), and the possible mechanisms of cur on the chronic myelogenous leukemia cell line K562. Methods: The K562 cell line was used as a P210bcr/abl-positive cell model in vitro and was exposed to different concentrations of PS-ASODN (0-20 μmol/L), cur (0-20 μmol/L), or a combination of both. Growth inhibition and apoptosis of K562 cells were assessed by MTT assay and AO/EB fluorescent staining, respec-tively. The expression levels of P210bct/abl, NF-κB and heat shock protein 90 (Hsp90) were assessed by Western blot. Results: Exposure to cur (5-20 μmol/L) and PS-ASODN (5-20 μmol/L) resulted in a synergistic inhibitory effect on cell growth.Growth inhibition was associated with the inhibition of the proliferation and in-duction of apoptosis. Western blot analysis showed that the drugs synergisti-cally downregulated the level of P210bcr/abl and NF-κB. Cur downregulated Hsp90,whereas no synergism was observed when cur was combined with PS-ASODN.Conclusion: PS-ASODN and cur exhibited a synergistic inhibitory effect on the cell growth of K562. The synergistic growth inhibition was mediated through different mechanisms that involved the inhibition of P210bcr/abl.

  9. A clinical and laboratory study of chronic myeloid leukemia with atypical BCR-ABL fusion gene subtypes

    Institute of Scientific and Technical Information of China (English)

    桂晓敏

    2014-01-01

    Objective To explore the clinical and laboratory features of chronic myeloid leukemia(CML)with atypical e14a3 and e19a2 BCR-ABL fusion gene subtypes.Methods We retrospectively analyzed a cohort of CML patients with Ph chromosome positive confirmed by cytogenetic and FISH but classical e13a3(b2a2),e14a2(b3a2)and e1a2 fusion transcripts negative identified by

  10. BCR Signaling Inhibitors: an Overview of Toxicities Associated with Ibrutinib and Idelalisib in Patients with Chronic Lymphocytic Leukemia

    OpenAIRE

    Falchi, Lorenzo; Baron, Jessica M.; Orlikowski, Carrie Anne; Ferrajoli, Alessandra

    2016-01-01

    The B-cell receptor (BCR) signaling inhibitors ibrutinib and idelalisib are revolutionizing the treatment of chronic lymphocytic leukemia (CLL) and other B-cell malignancies. These oral agents, both alone and in combination with other drugs, have shown remarkable clinical activity in relapsed or refractory CLL across all risk groups, and have been approved by the Food and Drug Administration for this indication. Preliminary data suggest that an even greater benefit can be expected in treatmen...

  11. NK cells are dysfunctional in human chronic myelogenous leukemia before and on imatinib treatment and in BCR-ABL-positive mice.

    Science.gov (United States)

    Chen, C I-U; Koschmieder, S; Kerstiens, L; Schemionek, M; Altvater, B; Pscherer, S; Gerss, J; Maecker, H T; Berdel, W E; Juergens, H; Lee, P P; Rossig, C

    2012-03-01

    Although BCR-ABL+ stem cells in chronic myeloid leukemia (CML) resist elimination by targeted pharmacotherapy in most patients, immunological graft-versus-leukemia effects can cure the disease. Besides cytotoxic T cells, natural killer (NK) cells may have a role in immune control of CML. Here, we explored the functionality of NK cells in CML patients and in a transgenic inducible BCR-ABL mouse model. Compared with controls, NK-cell proportions among lymphocytes were decreased at diagnosis of CML and did not recover during imatinib-induced remission for 10-34 months. Functional experiments revealed limited in vitro expansion of NK cells from CML patients and a reduced degranulation response to K562 target cells both at diagnosis and during imatinib therapy. Consistent with the results in human CML, relative numbers of NK1.1+ NK cells were reduced following induction of BCR-ABL expression in mice, and the defects persisted after BCR-ABL reversion. Moreover, target-induced degranulation by expanded BCR-ABL+ NK cells was compromised. We conclude that CML is associated with quantitative and functional defects within the NK-cell compartment, which is reproduced by induced BCR-ABL expression in mice. Further work will aim at identifying the mechanisms of NK-cell deficiency in CML and at developing strategies to exploit NK cells for immunotherapy. PMID:21904381

  12. Additive antileukemia effects by GFI1B- and BCR-ABL-specific siRNA in advanced phase chronic myeloid leukemic cells.

    Science.gov (United States)

    Koldehoff, M; Zakrzewski, J L; Beelen, D W; Elmaagacli, A H

    2013-07-01

    Previous studies demonstrated selective inhibition of the BCR-ABL (breakpoint cluster region-Abelson murine leukemia oncogene) tyrosine kinase by RNA interference in leukemic cells. In this study, we evaluated the effect of BCR-ABL small interfering RNA (siRNA) and GFI1B siRNA silencing on chronic myeloid leukemia (CML) cells in myeloid blast crises. The GFI1B gene was mapped to chromosome 9 and is, therefore, located downstream of the BCR-ABL translocation in CML cells. Co-transfection of BCR-ABL siRNA and GFI1B siRNA dramatically decreased cell viability and significantly induced apoptosis and inhibited proliferation in K562 cells (P<0.0001) and primary advanced phase CML cells (P<0.0001) versus controls. Furthermore, combining of BCR-ABL siRNA and GFI1B siRNA significantly modified the expression of several relevant genes including Myc, MDR1, MRP1 and tyrosyl-phosphoproteins in primary CML cells. Our data suggest that silencing of both BCR-ABL siRNA and GFI1B siRNA is associated with an additive antileukemic effect against K562 cells and primary advanced CML cells, further validating these genes as attractive therapeutic targets. PMID:23788109

  13. Time-sequential changes of differentially expressed miRNAs during the process of anterior lumbar interbody fusion using equine bone protein extract, rhBMP-2 and autograft

    Science.gov (United States)

    Chen, Da-Fu; Zhou, Zhi-Yu; Dai, Xue-Jun; Gao, Man-Man; Huang, Bao-Ding; Liang, Tang-Zhao; Shi, Rui; Zou, Li-Jin; Li, Hai-Sheng; Bünger, Cody; Tian, Wei; Zou, Xue-Nong

    2014-03-01

    The precise mechanism of bone regeneration in different bone graft substitutes has been well studied in recent researches. However, miRNAs regulation of the bone formation has been always mysterious. We developed the anterior lumbar interbody fusion (ALIF) model in pigs using equine bone protein extract (BPE), recombinant human bone morphogenetic protein-2 (rhBMP-2) on an absorbable collagen sponge (ACS), and autograft as bone graft substitute, respectively. The miRNA and gene expression profiles of different bone graft materials were examined using microarray technology and data analysis, including self-organizing maps, KEGG pathway and Biological process GO analyses. We then jointly analyzed miRNA and mRNA profiles of the bone fusion tissue at different time points respectively. Results showed that miRNAs, including let-7, miR-129, miR-21, miR-133, miR-140, miR-146, miR-184, and miR-224, were involved in the regulation of the immune and inflammation response, which provided suitable inflammatory microenvironment for bone formation. At late stage, several miRNAs directly regulate SMAD4, Estrogen receptor 1 and 5-hydroxytryptamine (serotonin) receptor 2C for bone formation. It can be concluded that miRNAs play important roles in balancing the inflammation and bone formation.

  14. Asynchronous Anytime Sequential Monte Carlo

    OpenAIRE

    Paige, Brooks; Wood, Frank; Doucet, Arnaud; Teh, Yee Whye

    2014-01-01

    We introduce a new sequential Monte Carlo algorithm we call the particle cascade. The particle cascade is an asynchronous, anytime alternative to traditional particle filtering algorithms. It uses no barrier synchronizations which leads to improved particle throughput and memory efficiency. It is an anytime algorithm in the sense that it can be run forever to emit an unbounded number of particles while keeping within a fixed memory budget. We prove that the particle cascade is an unbiased mar...

  15. Neural Adaptive Sequential Monte Carlo

    OpenAIRE

    Gu, Shixiang; Ghahramani, Zoubin; Turner, Richard E

    2015-01-01

    Sequential Monte Carlo (SMC), or particle filtering, is a popular class of methods for sampling from an intractable target distribution using a sequence of simpler intermediate distributions. Like other importance sampling-based methods, performance is critically dependent on the proposal distribution: a bad proposal can lead to arbitrarily inaccurate estimates of the target distribution. This paper presents a new method for automatically adapting the proposal using an approximation of the Ku...

  16. Structural Mechanism of the Pan-BCR-ABL Inhibitor Ponatinib (AP24534): Lessons for Overcoming Kinase Inhibitor Resistance

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, Tianjun; Commodore, Lois; Huang, Wei-Sheng; Wang, Yihan; Thomas, Mathew; Keats, Jeff; Xu, Qihong; Rivera, Victor M.; Shakespeare, William C.; Clackson, Tim; Dalgarno, David C.; Zhu, Xiaotian (ARIAD)

    2012-01-20

    The BCR-ABL inhibitor imatinib has revolutionized the treatment of chronic myeloid leukemia. However, drug resistance caused by kinase domain mutations has necessitated the development of new mutation-resistant inhibitors, most recently against the T315I gatekeeper residue mutation. Ponatinib (AP24534) inhibits both native and mutant BCR-ABL, including T315I, acting as a pan-BCR-ABL inhibitor. Here, we undertook a combined crystallographic and structure-activity relationship analysis on ponatinib to understand this unique profile. While the ethynyl linker is a key inhibitor functionality that interacts with the gatekeeper, virtually all other components of ponatinib play an essential role in its T315I inhibitory activity. The extensive network of optimized molecular contacts found in the DFG-out binding mode leads to high potency and renders binding less susceptible to disruption by single point mutations. The inhibitory mechanism exemplified by ponatinib may have broad relevance to designing inhibitors against other kinases with mutated gatekeeper residues.

  17. INTERNAL RATING – AN ACTIVE INSTRUMENT IN THE MANAGEMENT OF BANKING RISKS. CASE STUDY BCR

    Directory of Open Access Journals (Sweden)

    PhD Gabriela Cornelia Piciu

    2013-06-01

    Full Text Available This paper aims to clarify some aspects regarding the banking activity in general, of crediting, in particular, because it involves a risk by the very elements of anticipation underlying the decision of the banking specialists. For the bank it is very important to know this risk, to make an evaluation as close as possible to reality, and to reject or accept it in full awareness. The contribution of the internal rating in terms of efficiency and stability of a bank is shown via a case study – the Romanian Commercial Bank. The internal rating used by BCR is an active instrument for making credit decisions it provides valuable indicators to the banking analysts that can be used to develop de risk management policies and the prudential measures for the balanced risk dispersion. Given the fact that the credit rating contributes to the objective, professional analysis, the system must be continuously improved and developed by categories of clients and types of risk, so that the included criteria and the resulting conclusions are relevant.

  18. Determination of the stable iron isotopic composition of sequentially leached iron phases in marine sediments

    OpenAIRE

    Henkel, Susann; Kasten, Sabine; Poulton, Simon W.; Michael STAUBWASSER

    2016-01-01

    Reactive iron (oxyhydr)oxide minerals preferentially undergo early diagenetic redox cycling which can result in the production of dissolved Fe(II), the adsorption of Fe(II) onto particle surfaces, and the formation of authigenic Fe minerals. The partitioning of iron in sediments has traditionally been studied by applying sequential extractions that target operationally-defined iron phases. Here, we complement an existing sequential leaching method by developing a sample processing protocol fo...

  19. The sequential structure of brain activation predicts skill.

    Science.gov (United States)

    Anderson, John R; Bothell, Daniel; Fincham, Jon M; Moon, Jungaa

    2016-01-29

    In an fMRI study, participants were trained to play a complex video game. They were scanned early and then again after substantial practice. While better players showed greater activation in one region (right dorsal striatum) their relative skill was better diagnosed by considering the sequential structure of whole brain activation. Using a cognitive model that played this game, we extracted a characterization of the mental states that are involved in playing a game and the statistical structure of the transitions among these states. There was a strong correspondence between this measure of sequential structure and the skill of different players. Using multi-voxel pattern analysis, it was possible to recognize, with relatively high accuracy, the cognitive states participants were in during particular scans. We used the sequential structure of these activation-recognized states to predict the skill of individual players. These findings indicate that important features about information-processing strategies can be identified from a model-based analysis of the sequential structure of brain activation. PMID:26707716

  20. Sequential injection approach for simultaneous determination of ultratrace plutonium and neptunium in urine with accelerator mass spectrometry

    DEFF Research Database (Denmark)

    Qiao, Jixin; Hou, Xiaolin; Roos, Per;

    2013-01-01

    An analytical method was developed for simultaneous determination of ultratrace level plutonium (Pu) and neptunium (Np) using iron hydroxide coprecipitation in combination with automated sequential injection extraction chromatography separation and accelerator mass spectrometry (AMS) measurement...

  1. Sequential bilateral retinal artery occlusion

    OpenAIRE

    Padrón-Pérez N; Aronés JR; Muñoz S; Arias-Barquet L; Arruga J

    2014-01-01

    Noel Padrón-Pérez,1 Janny Rosario Aronés,2 Silvia Muñoz,1 Luis Arias-Barquet,1 Jorge Arruga1,31Department of Ophthalmology, Hospital Universitari de Bellvitge, 2Hospital de l'Esperança – Parc de Salut Mar, 3Institut Català de Retina, Barcelona, SpainAbstract: An 86 year old woman experienced a sequential bilateral loss of vision over a period of less than 24 hours. Clinical findings and complementary studies suggested a bilateral atherogenic...

  2. BCR- ringtest of some individual chlorobiphenyls in cleaned eel-fat extracts (3/1984): Splitless injection : summary of results

    NARCIS (Netherlands)

    Anonymous,

    1984-01-01

    In the meeting on PCB analyses organized in Ulm, Donau, West Germany, 11-13 April 1984, where the second ringtest 2/1983 (Report 84.27 d.d. 1984- 03-26 ) was discussed, it was decided to organize a next ringtest. In this ringtest identification and quantification of some individual chlorobiphenyls s

  3. Delay test generation for synchronous sequential circuits

    Science.gov (United States)

    Devadas, Srinivas

    1989-05-01

    We address the problem of generating tests for delay faults in non-scan synchronous sequential circuits. Delay test generation for sequential circuits is a considerably more difficult problem than delay testing of combinational circuits and has received much less attention. In this paper, we present a method for generating test sequences to detect delay faults in sequential circuits using the stuck-at fault sequential test generator STALLION. The method is complete in that it will generate a delay test sequence for a targeted fault given sufficient CPU time, if such a sequence exists. We term faults for which no delay test sequence exists, under out test methodology, sequentially delay redundant. We describe means of eliminating sequential delay redundancies in logic circuits. We present a partial-scan methodology for enhancing the testability of difficult-to-test of untestable sequential circuits, wherein a small number of flip-flops are selected and made controllable/observable. The selection process guarantees the elimination of all sequential delay redundancies. We show that an intimate relationship exists between state assignment and delay testability of a sequential machine. We describe a state assignment algorithm for the synthesis of sequential machines with maximal delay fault testability. Preliminary experimental results using the test generation, partial-scan and synthesis algorithm are presented.

  4. Extraction of Heavy Metals from Sludge Using Biodegradable Chelating Agent N,N-bis(carboxymethyl) Glutamic Acid Tetrasodium%生物可降解螯合剂谷氨酸 N,N -二乙酸四钠对污泥中重金属萃取效率的研究

    Institute of Scientific and Technical Information of China (English)

    吴青; 崔延瑞; 汤晓晓; 杨慧娟; 孙剑辉

    2015-01-01

    N, N-bis ( carboxymethyl) glutamic acid tetrasodium ( GLDA), a novel biodegradable and green chelating agent, has excellent metal chelating ability. Batch experiment was conducted to study the extraction process of Cd, Ni, Cu and Zn in industrial sludge using GLDA. The effects of contact time, pH of the system, content of chelating agent were investigated, and the forms of heavy metals in sludge pre- and post-extraction using the modified BCR sequential extraction procedure were studied. The results showed that GLDA was effective for cadmium extraction in sludge. Several heavy metals could be effectively extracted under the condition of pH 4 and molar ratio of chelating agent to total heavy metal 3: 1. Residual fraction took the largest fraction in Zn, which caused the low extraction efficiency of this metal. Chelating properties were related not only to contact time, pH, chelating agent’s concentration, and stability constant but also to species distribution of metals.%谷氨酸 N,N -二乙酸四钠(GLDA)具有较强金属螯合能力,是新一代生物可降解绿色螯合剂。通过分批提取实验对GLDA 去除工业污泥中 Cd、 Ni、 Cu、 Zn 的萃取过程进行研究,考察了萃取时间、萃取体系 pH 值、螯合剂用量等因素对重金属萃取效果的影响,并采用修正的 BCR 连续提取法分析萃取前后污泥中重金属的形态。结果表明, GLDA 对污泥中 Cd 具有良好的去除效果;体系在 pH =4,螯合剂与重金属总量摩尔比为3:1的条件下,多种重金属取得最佳萃取效果; Zn 主要以残渣态存在,导致该金属萃取率低;螯合能力不仅与萃取时间,萃取体系 pH 值,螯合剂用量,螯合常数等因素有关,而且还与金属的形态分布有关。

  5. Methods of Analysis by the U.S. Geological Survey Organic Geochemistry Research Group-Determination of Dissolved Isoxaflutole and Its Sequential Degradation Products, Diketonitrile and Benzoic Acid, in Water Using Solid-Phase Extraction and Liquid Chromatography/Tandem Mass Spectrometry

    Science.gov (United States)

    Meyer, Michael T.; Lee, Edward A.; Scribner, Elisabeth A.

    2007-01-01

    An analytical method for the determination of isoxaflutole and its sequential degradation products, diketonitrile and a benzoic acid analogue, in filtered water with varying matrices was developed by the U.S. Geological Survey Organic Geochemistry Research Group in Lawrence, Kansas. Four different water-sample matrices fortified at 0.02 and 0.10 ug/L (micrograms per liter) are extracted by vacuum manifold solid-phase extraction and analyzed by liquid chromatography/tandem mass spectrometry using electrospray ionization in negative-ion mode with multiple-reaction monitoring (MRM). Analytical conditions for mass spectrometry detection are optimized, and quantitation is carried out using the following MRM molecular-hydrogen (precursor) ion and product (p) ion transition pairs: 357.9 (precursor), 78.9 (p), and 277.6 (p) for isoxaflutole and diketonitrile, and 267.0 (precursor), 159.0 (p), and 223.1 (p) for benzoic acid. 2,4-dichlorophenoxyacetic acid-d3 is used as the internal standard, and alachlor ethanesulfonic acid-d5 is used as the surrogate standard. Compound detection limits and reporting levels are calculated using U.S. Environmental Protection Agency procedures. The mean solid-phase extraction recovery values ranged from 104 to 108 percent with relative standard deviation percentages ranging from 4.0 to 10.6 percent. The combined mean percentage concentration normalized to the theoretical spiked concentration of four water matrices analyzed eight times at 0.02 and 0.10 ug/L (seven times for the reagent-water matrix at 0.02 ug/L) ranged from approximately 75 to 101 percent with relative standard deviation percentages ranging from approximately 3 to 26 percent for isoxaflutole, diketonitrile, and benzoic acid. The method detection limit (MDL) for isoxaflutole and diketonitrile is 0.003 ug/L and 0.004 ug/L for benzoic acid. Method reporting levels (MRLs) are 0.011, 0.010, and 0.012 ug/L for isoxaflutole, diketonitrile, and benzoic acid, respectively. On the basis

  6. Interferon-α Revisited: Individualized Treatment Management Eased the Selective Pressure of Tyrosine Kinase Inhibitors on BCR-ABL1 Mutations Resulting in a Molecular Response in High-Risk CML Patients.

    Science.gov (United States)

    Polivkova, Vaclava; Rohon, Peter; Klamova, Hana; Cerna, Olga; Divoka, Martina; Curik, Nikola; Zach, Jan; Novak, Martin; Marinov, Iuri; Soverini, Simona; Faber, Edgar; Machova Polakova, Katerina

    2016-01-01

    Bone marrow transplantation or ponatinib treatment are currently recommended strategies for management of patients with chronic myeloid leukemia (CML) harboring the T315I mutation and compound or polyclonal mutations. However, in some individual cases, these treatment scenarios cannot be applied. We used an alternative treatment strategy with interferon-α (IFN-α) given solo, sequentially or together with TKI in a group of 6 cases of high risk CML patients, assuming that the TKI-independent mechanism of action may lead to mutant clone repression. IFN-α based individualized therapy decreases of T315I or compound mutations to undetectable levels as assessed by next-generation deep sequencing, which was associated with a molecular response in 4/6 patients. Based on the observed results from immune profiling, we assumed that the principal mechanism leading to the success of the treatment was the immune activation induced with dasatinib pre-treatment followed by restoration of immunological surveillance after application of IFN-α therapy. Moreover, we showed that sensitive measurement of mutated BCR-ABL1 transcript levels augments the safety of this individualized treatment strategy. PMID:27214026

  7. Interferon-α Revisited: Individualized Treatment Management Eased the Selective Pressure of Tyrosine Kinase Inhibitors on BCR-ABL1 Mutations Resulting in a Molecular Response in High-Risk CML Patients.

    Directory of Open Access Journals (Sweden)

    Vaclava Polivkova

    Full Text Available Bone marrow transplantation or ponatinib treatment are currently recommended strategies for management of patients with chronic myeloid leukemia (CML harboring the T315I mutation and compound or polyclonal mutations. However, in some individual cases, these treatment scenarios cannot be applied. We used an alternative treatment strategy with interferon-α (IFN-α given solo, sequentially or together with TKI in a group of 6 cases of high risk CML patients, assuming that the TKI-independent mechanism of action may lead to mutant clone repression. IFN-α based individualized therapy decreases of T315I or compound mutations to undetectable levels as assessed by next-generation deep sequencing, which was associated with a molecular response in 4/6 patients. Based on the observed results from immune profiling, we assumed that the principal mechanism leading to the success of the treatment was the immune activation induced with dasatinib pre-treatment followed by restoration of immunological surveillance after application of IFN-α therapy. Moreover, we showed that sensitive measurement of mutated BCR-ABL1 transcript levels augments the safety of this individualized treatment strategy.

  8. Interferon-α Revisited: Individualized Treatment Management Eased the Selective Pressure of Tyrosine Kinase Inhibitors on BCR-ABL1 Mutations Resulting in a Molecular Response in High-Risk CML Patients

    Science.gov (United States)

    Polivkova, Vaclava; Rohon, Peter; Klamova, Hana; Cerna, Olga; Divoka, Martina; Curik, Nikola; Zach, Jan; Novak, Martin; Marinov, Iuri; Soverini, Simona; Faber, Edgar; Machova Polakova, Katerina

    2016-01-01

    Bone marrow transplantation or ponatinib treatment are currently recommended strategies for management of patients with chronic myeloid leukemia (CML) harboring the T315I mutation and compound or polyclonal mutations. However, in some individual cases, these treatment scenarios cannot be applied. We used an alternative treatment strategy with interferon-α (IFN-α) given solo, sequentially or together with TKI in a group of 6 cases of high risk CML patients, assuming that the TKI-independent mechanism of action may lead to mutant clone repression. IFN-α based individualized therapy decreases of T315I or compound mutations to undetectable levels as assessed by next-generation deep sequencing, which was associated with a molecular response in 4/6 patients. Based on the observed results from immune profiling, we assumed that the principal mechanism leading to the success of the treatment was the immune activation induced with dasatinib pre-treatment followed by restoration of immunological surveillance after application of IFN-α therapy. Moreover, we showed that sensitive measurement of mutated BCR-ABL1 transcript levels augments the safety of this individualized treatment strategy. PMID:27214026

  9. Solar flare forecasting based on sequential sunspot data

    International Nuclear Information System (INIS)

    It is widely believed that the evolution of solar active regions leads to solar flares. However, information about the evolution of solar active regions is not employed in most existing solar flare forecasting models. In the current work, a short-term solar flare forecasting model is proposed, in which sequential sunspot data, including three days of information about evolution from active regions, are taken as one of the basic predictors. The sunspot area, the McIntosh classification, the magnetic classification and the radio flux are extracted and converted to a numerical format that is suitable for the current forecasting model. Based on these parameters, the sliding-window method is used to form the sequential data by adding three days of information about evolution. Then, multi-layer perceptron and learning vector quantization are employed to predict the flare level within 48h. Experimental results indicate that the performance of the proposed flare forecasting model works better than previous models

  10. A Parallel Programming Model with Sequential Semantics

    OpenAIRE

    Thornley, John

    1996-01-01

    Parallel programming is more difficult than sequential programming in part because of the complexity of reasoning, testing, and debugging in the context of concurrency. In this thesis, we present and investigate a parallel programming model that provides direct control of parallelism in a notation with sequential semantics. Our model consists of a standard sequential imperative programming notation extended with the following three pragmas: (1) The parallelizable sequence of statements pragma...

  11. Relationship between JAK2 gene V617F mutation and clinical characteristics in patients with BCR-ABL-negative myeloproliferative neoplasms%BCR-ABL阴性的骨髓增殖性肿瘤JAK2基因V617F突变分析

    Institute of Scientific and Technical Information of China (English)

    张燕香; 魏蓉

    2013-01-01

    目的:探讨BCR-ABL阴性的骨髓增殖性肿瘤(myeloproliferative neoplasms,MPN)患者蛋白质酪氨酸激酶基因(JAK2)V617F突变的发生率及其与患者临床特征的关系.方法:抽提65例MPN患者骨髓细胞DNA(其中真性红细胞增多症28例,特发性血小板增多症30例,特发性骨髓纤维化7例),应用等位基因特异性PCR技术(allele specific PCR,AS-PCR)分析JAK2基因V617F突变的发生率,并分析此突变与外周血细胞计数及血栓发生率等临床特征的关系.结果:65例MPN患者的V617F突变阳性率为64.62% (42/65).其中真性红细胞增多症患者的阳性率为75.00% (21/28),其白细胞及血小板计数较非突变者均显著增高(P<0.001);特发性血小板增多症患者该突变的阳性率为56.67% (17/30),其白细胞计数和血红蛋白水平均较非突变者显著增高(P<0.05);而7例特发性骨髓纤维化患者中4例被检出此突变阳性,其白细胞、血小板计数及血红蛋白水平与非突变者比较,差异则无统计学意义.同时,携带V617F突变的MPN患者血栓发生率明显高于非突变者(P<0.05).结论:JAK2基因V617F突变是我国BCR-ABL阴性MPN患者主要的分子遗传标志,可作为临床诊断的指标之一,而此突变对临床特征有一定影响.%Objective:To investigate the relationship between V617F mutation in JAK2 gene and clinical characteristics in patients with BCR-ABL-negative myeloproliferative neoplasms (MPN).Methods:Sixty-five patients with MPN,including 28 subjects with polycythemia vera (PV),30 subjects with essential thrombocythemia (ET) and 7 subjects with idiopathic myelofibrosis (IMF) were enrolled in this study.Bone marrow cell DNA was extracted from MPN patients,and V617F mutation in JAK2 gene was identified by allele specific PCR (AS-PCR).The correlation between V617F mutation and clinical characteristics such as peripheral blood cell count and incidence of thrombosis were analyzed.Results:Of the 65 patients

  12. Frequency of p190 and p210 BCR-ABL rearrangements and survival in Brazilian adult patients with acute lymphoblastic leukemia

    Directory of Open Access Journals (Sweden)

    Ilana de França Azevedo

    2014-10-01

    Full Text Available Objective: This study investigated the occurrence of the p190 and p210 break point clusterregion-Abelson (BCR-ABL rearrangements in adults with acute lymphoblastic leukemia and possible associations with clinical and laboratory characteristics and survival. Methods: Forty-one over 18-year-old patients with acute lymphoblastic leukemia of both genders followed-up between January 2008 and May 2012 were included in this study. Clinical and laboratory data were obtained from the medical charts of the patients. Reverse transcription polymerase chain reaction (RT-PCR using specific primers was employed to identify molecular rearrangements. Results: At diagnosis, the median age was 33 years, and there was a predominance of males (61%. The most common immunophenotype was B lineage (76%. BCR-ABL rearrangements was detected in 14 (34% patients with the following distribution: p190 (28%, p210 (50% and double positive (22%. Overall survival of patients with a mean/median of 331/246 days of follow up was 39%, respectively, negative BCR-ABL (44% and positive BCR-ABL (28%. Conclusion: These results confirm the high frequency of BCR-ABL rearrangements and the low survival rate of adult Brazilian patients with acute lymphoblastic leukemia.

  13. The Origin of Sequential Chromospheric Brightening

    Science.gov (United States)

    Kirk, Michael S.; Balasubramaniam, K. S.; Jackiewicz, Jason; Gilbert, Holly

    2016-05-01

    Sequential Chromospheric Brightenings (SCBs) are often observed in the immediate vicinity of erupting flares and are associated with coronal mass ejections. When SCBs are observed, they routinely appear before the peak emission of the flare and several hours before the first detection of a coupled CME. Since their initial discovery in 2005, there have been several subsequent investigations of SCBs. In each case, these sudden, small-scale brightenings provide vital clues regarding the mechanisms of large-scale energy release in the solar atmosphere. We make use of an automated detection algorithm developed by Kirk et al. (2013) to extract the physical qualities of SCBs in 11 flares of varying size and intensity. Using complementary magnetic field measurements, we also model the potential field beneath these brightenings. We conclude that SCBs originate in the lower corona around 0.1 R⊙ above the photosphere, propagate away from the flare center at speeds 35 ‑ 85 km s‑1, and have typical photosphere magnetic intensities 257± 37 G. In light of these measurements, we conclude that SCBs are distinctive chromospheric signatures of erupting coronal mass ejections.

  14. Non-sequential double ionization of molecules

    CERN Document Server

    Prauzner-Bechcicki, J S; Eckhardt, B; Zakrzewski, J; Prauzner-Bechcicki, Jakub S.; Sacha, Krzysztof; Eckhardt, Bruno; Zakrzewski, Jakub

    2004-01-01

    Double ionization of diatomic molecules by short linearly polarized laser pulses is analyzed. We consider the final stage of the ionization process, that is the decay of a highly excited two electron molecule, which is formed after re-scattering. The saddles of the effective adiabatic potential energy close to which simultaneous escape of electrons takes place are identified. Numerical simulations of the ionization of molecules show that the process can be dominated by either sequential or non-sequential events. In order to increase the ratio of non-sequential to sequential ionizations very short laser pulses should be applied.

  15. Extracción secuencial y caracterización fisicoquímica de ácidos húmicos en diferentes compost y el efecto sobre trigo Sequential extraction and physicochemical characterization of humic acids in different compost and the effect on wheat

    Directory of Open Access Journals (Sweden)

    María Dolores Rodríguez Torres

    properties and the response of crops to their application. The extraction of humic substances with a single turmoil leaves considerable amounts of compounds in the substrate, and therefore sequential extractions with different reagents separate the residual humic substances, resulting in a real estimation of the quality of the compost in agricultural management. The aims of this work were: a to sequentially remove the humic substances of four composts using three solutions; b to determine the functional carboxylic, phenolic and oxidrylic groups of humic acids contained in the compost; c to determine the physiochemical parameters C/N, CIC, pH, ΔpH and E4/E6; and d to evaluate the agronomic effects of humid substances on wheat growth. Compost with six months of humification was used, made from maize stubble, wheat hay, fruit waste and bovine manure; the sequential extraction was carried out with NaOH 0.5M, Na4P2O7 0.1M and NaF 0.1M, and its physical and chemical properties were evaluated. The yields obtained were 21.73% for maize stubble, 15.3% for wheat hay, 19.62% for bovine manure and 16.89% for fruit waste. The humic substances studied of the compost displayed significant differences in their properties, which indicate different molecules. The yields of the total dry biomass were not affected by the different doses of humic acids applied to the soil (Tukey, a= 0.05 under greenhouse conditions, since the time the wheat remained under the effect of humic acids, both in the soil and in the foliage, was not enough to obtain a significant effect in terms of growth.

  16. Differential expression of Toll-like receptor (TLR) and B cell receptor (BCR) signaling molecules in primary diffuse large B-cell lymphoma of the central nervous system.

    Science.gov (United States)

    Akhter, Ariz; Masir, Noraidah; Elyamany, Ghaleb; Phang, Kean-Chang; Mahe, Etienne; Al-Zahrani, Ali Matar; Shabani-Rad, Meer-Taher; Stewart, Douglas Allan; Mansoor, Adnan

    2015-01-01

    Primary diffuse large B-cell lymphoma of the central nervous system (CNS DLBCL) is a distinct and aggressive lymphoma that is confined to CNS. Since, central nervous system is barrier-protected and immunologically silent; role of TLR/BCR signaling in pathogenesis and biology of CNS DLBCL is intriguing. Genomic mutations in key regulators of TLR/BCR signaling pathway (MYD88/CD79B/CARD11) have recently been reported in this disease. These observations raised possible implications in novel targeted therapies; however, expression pattern of molecules related to TLR/BCR pathways in this lymphoma remains unknown. We have analyzed the expression of 19 genes encoding TLR/BCR pathways and targets in CNS DLBCLs (n = 20) by Nanostring nCounter™ analysis and compared it with expression patterns in purified reactive B-lymphocytes and systemic diffuse large B cell lymphoma (DLBCL) (n = 20). Relative expression of TLR4, TLR5, TLR9, CD79B and BLNK was higher in CNS DLBCLs than in control B-lymphocytes; where as TLR7, MALT1, BCL10, CD79A and LYN was lower in CNS DLBCLs (P 1.5 fold change; P < 0.01). The B cell receptor molecules like BLNK and CD79B were also associated with higher expression of MYD88 dependent TLRs (TLR4/5/9). In conclusion, we have shown over expression of TLR/BCR related genes or their targets, where genomic mutations have commonly been identified in CNS DLBCL. We have also demonstrated that TLR over expression closely relate with up regulation of genes associated with BCR pathway like CD79B/BLNK and CARD11, which play an important role in NF-kB pathway activation. Our results provide an important insight into the possibility of TLR and/or B-cell receptor signaling molecules as possible therapeutic targets in CNS DLBCL. PMID:25391967

  17. Involvement of primary mesenchymal precursors and hematopoietic bone marrow cells from chronic myeloid leukemia patients by BCR-ABL1 fusion gene.

    Science.gov (United States)

    Chandia, Mauricio; Sayagués, José-María; Gutiérrez, María-Laura; Chillón, María-Laura; Aristizábal, José-Alejandro; Corrales, Alejandro; Castellanos, Marta; Melón, Alberto; Sánchez, María-Luz; Bárcena, Paloma; Matarraz, Sergio; González-González, María; Barrena, Susana; López, Antonio; Cañizo, María-Consuelo; Sánchez-Guijo, Fermín; Orfao, Alberto

    2014-03-01

    For decades now, it is well established that chronic myeloid leukemia (CML) is a hematopoietic stem cell(HPC) disorder. However, it remains to be determined whether BCR-ABL1 gene rearrangement occurs in a HPC or at an earlier stem cell and whether the degree of involvement of hematopoiesis by the BCR-ABL1 fusion gene relates to the response to therapy. Here, we have investigated by interphase fluorescence in situ hybridization (iFISH) the distribution of BCR-ABL1 fusion gene in FACS-sorted bone marrow (BM) populations of mesenchymal precursor cells (MPC) and other hematopoietic cell populations from 18 newly diagnosed CML patients. Overall, our results showed systematic involvement at relatively high percentages of BM maturing neutrophils (97%615%), basophils (95%612%), eosinophils (90%68%), CD341 precursors cells (90%67%),monocytes (84%630%), nucleated red blood cells (87%624%), and mast cells (77%633%). By contrast, MPC(30%634%), B-cells (15%627%), T-lymphocytes (50%626%), and NK-cells (35%634%) were involved at lower percentages. In 8/18 CML patients, 2 tumor BCR-ABL11 subclones were detected by iFISH. Of note, all tumor cell subclones were systematically detected in CD341 cells, whereas MPC were only involved by the ancestral tumor cell subclone. In summary, here we confirm the presence at diagnosis of the BCR-ABL1 fusion gene inMPC, CD341 precursors, and other different BM hematopoietic myeloid cell lineages from CML patients,including also in a significant fraction of cases, a smaller percentage of T, B, and NK lymphocytes.Interestingly, involvement of MPC was restricted to the ancestral BCR-ABL11 subclone. PMID:24779036

  18. Analyzing Sequential Patterns in Retail Databases

    Institute of Scientific and Technical Information of China (English)

    Unil Yun

    2007-01-01

    Finding correlated sequential patterns in large sequence databases is one of the essential tasks in data miningsince a huge number of sequential patterns are usually mined, but it is hard to find sequential patterns with the correlation.According to the requirement of real applications, the needed data analysis should be different. In previous mining approaches,after mining the sequential patterns, sequential patterns with the weak affinity are found even with a high minimum support.In this paper, a new framework is suggested for mining weighted support affinity patterns in which an objective measure,sequential ws-confidence is developed to detect correlated sequential patterns with weighted support affinity patterns. Toefficiently prune the weak affinity patterns, it is proved that ws-confidence measure satisfies the anti-monotone and crossweighted support properties which can be applied to eliminate sequential patterns with dissimilar weighted support levels.Based on the framework, a weighted support affinity pattern mining algorithm (WSMiner) is suggested. The performancestudy shows that WSMiner is efficient and scalable for mining weighted support affinity patterns.

  19. Allelic expression imbalance of JAK2 V617F mutation in BCR-ABL negative myeloproliferative neoplasms.

    Directory of Open Access Journals (Sweden)

    Hye-Ran Kim

    Full Text Available The discovery of a single point mutation in the JAK2 gene in patients with BCR/ABL-negative myeloproliferative neoplasms (MPNs has not only brought new insights and pathogenesis, but also has made the diagnosis of MPNs much easier. Although, to date, several mechanisms for the contribution of single JAK2V617F point mutation to phenotypic diversity of MPNs have been suggested in multiple studies, but it is not clear how a unique mutation can cause the phenotypic diversity of MPNs. In this study, our results show that allelic expression imbalance of JAK2 V617F mutant frequently occurs and contributes to phenotypic diversity of BCR-ABL-negative MPNs. The proportion of JAK2 V617F mutant allele was significantly augmented in RNA levels as compared with genomic DNA differently by distinct MPNs subtypes. In detail, preferential expression of JAK2 mutant allele showed threefold increase from the cDNA compared with the genomic DNA from patients with essential thrombocythemia and twofold increase in polycythemia vera. In conclusion, allelic expression imbalance of JAK2 V617F mutant proposes another plausible mechanism for the contribution of single JAK2 point mutation to phenotypic diversity of MPNs.

  20. Conditional knockdown of BCL2A1 reveals rate-limiting roles in BCR-dependent B-cell survival.

    Science.gov (United States)

    Sochalska, M; Ottina, E; Tuzlak, S; Herzog, S; Herold, M; Villunger, A

    2016-04-01

    Bcl2 family proteins control mitochondrial apoptosis and its members exert critical cell type and differentiation stage-specific functions, acting as barriers against autoimmunity or transformation. Anti-apoptotic Bcl2a1/Bfl1/A1 is frequently deregulated in different types of blood cancers in humans but its physiological role is poorly understood as quadruplication of the Bcl2a1 gene locus in mice hampers conventional gene targeting strategies. Transgenic overexpression of A1, deletion of the A1-a paralogue or constitutive knockdown in the hematopoietic compartment of mice by RNAi suggested rate-limiting roles in lymphocyte development, granulopoiesis and mast cell activation. Here we report on the consequences of conditional knockdown of A1 protein expression using a reverse transactivator (rtTA)-driven approach that highlights a critical role for this Bcl2 family member in the maintenance of mature B-cell homeostasis. Furthermore, we define the A1/Bim (Bcl-2 interacting mediator of cell death) axis as a target of key kinases mediating B-cell receptor (BCR)-dependent survival signals, such as, spleen tyrosine kinase (Syk) and Brutons tyrosine kinase (Btk). As such, A1 represents a putative target for the treatment of B-cell-related pathologies depending on hyperactivation of BCR-emanating survival signals and loss of A1 expression accounts, in part, for the pro-apoptotic effects of Syk- or Btk inhibitors that rely on the 'BH3-only' protein Bim for cell killing. PMID:26450454

  1. BCR Signaling Inhibitors: an Overview of Toxicities Associated with Ibrutinib and Idelalisib in Patients with Chronic Lymphocytic Leukemia.

    Science.gov (United States)

    Falchi, Lorenzo; Baron, Jessica M; Orlikowski, Carrie Anne; Ferrajoli, Alessandra

    2016-01-01

    The B-cell receptor (BCR) signaling inhibitors ibrutinib and idelalisib are revolutionizing the treatment of chronic lymphocytic leukemia (CLL) and other B-cell malignancies. These oral agents, both alone and in combination with other drugs, have shown remarkable clinical activity in relapsed or refractory CLL across all risk groups, and have been approved by the Food and Drug Administration for this indication. Preliminary data suggest that an even greater benefit can be expected in treatment-naïve CLL patients. Both ibrutinib and idelalisib are well tolerated by most patients, including older, frailer individuals. Toxicities are usually mild and self-resolving. Clinicians must, however, be aware of a number of peculiar adverse events, the effects of which can be severe enough to limit the clinical use of these agents. In this review, we survey the salient aspects of the pharmacology and clinical experience with the use of BCR signaling inhibitors for the treatment of patients with CLL. We next focus on both the most common and the most clinically significant toxicities associated with these drugs. PMID:26977270

  2. Multi-agent sequential hypothesis testing

    KAUST Repository

    Kim, Kwang-Ki K.

    2014-12-15

    This paper considers multi-agent sequential hypothesis testing and presents a framework for strategic learning in sequential games with explicit consideration of both temporal and spatial coordination. The associated Bayes risk functions explicitly incorporate costs of taking private/public measurements, costs of time-difference and disagreement in actions of agents, and costs of false declaration/choices in the sequential hypothesis testing. The corresponding sequential decision processes have well-defined value functions with respect to (a) the belief states for the case of conditional independent private noisy measurements that are also assumed to be independent identically distributed over time, and (b) the information states for the case of correlated private noisy measurements. A sequential investment game of strategic coordination and delay is also discussed as an application of the proposed strategic learning rules.

  3. BCR translocation to derivative chromosome 2: a new case of chronic myeloid leukemia with a complex variant translocation and Philadelphia chromosome

    OpenAIRE

    Al-Achkar, Walid; Wafa, Abdulsamad; ALMEDANI, SUHER

    2010-01-01

    The well-known typical fusion gene BCR/ABL is observed in connection with a complex translocation event in 5–8% of cases of chronic myeloid leukemia (CML). The present study described an exceptional CML case with complex chromosomal aberrations not previously observed. Aberrations included a translocated BCR to the derivative chromosome 2 [der(2)] that also involved a four-chromosome translocation, implying chromosomal regions 1p32 and 2q21, besides 9q34 and 22q11.2, which were characterized ...

  4. Introducing a Probabilistic Structure on Sequential Dynamical Systems, Simulation and Reduction of Probabilistic Sequential Networks

    CERN Document Server

    Avino-Diaz, Maria A

    2007-01-01

    A probabilistic structure on sequential dynamical systems is introduced here, the new model will be called Probabilistic Sequential Network, PSN. The morphisms of Probabilistic Sequential Networks are defined using two algebraic conditions, whose imply that the distribution of probabilities in the systems are close. It is proved here that two homomorphic Probabilistic Sequential Networks have the same equilibrium or steady state probabilities. Additionally, the proof of the set of PSN with its morphisms form the category PSN, having the category of sequential dynamical systems SDS, as a full subcategory is given. Several examples of morphisms, subsystems and simulations are given.

  5. A Sequential Procedure for Individual Identity Verification Using ECG

    Science.gov (United States)

    Irvine, John M.; Israel, Steven A.

    2009-12-01

    The electrocardiogram (ECG) is an emerging novel biometric for human identification. One challenge for the practical use of ECG as a biometric is minimizing the time needed to acquire user data. We present a methodology for identity verification that quantifies the minimum number of heartbeats required to authenticate an enrolled individual. The approach rests on the statistical theory of sequential procedures. The procedure extracts fiducial features from each heartbeat to compute the test statistics. Sampling of heartbeats continues until a decision is reached—either verifying that the acquired ECG matches the stored credentials of the individual or that the ECG clearly does not match the stored credentials for the declared identity. We present the mathematical formulation of the sequential procedure and illustrate the performance with measured data. The initial test was performed on a limited population, twenty-nine individuals. The sequential procedure arrives at the correct decision in fifteen heartbeats or fewer in all but one instance and in most cases the decision is reached with half as many heartbeats. Analysis of an additional 75 subjects measured under different conditions indicates similar performance. Issues of generalizing beyond the laboratory setting are discussed and several avenues for future investigation are identified.

  6. A Sequential Procedure for Individual Identity Verification Using ECG

    Directory of Open Access Journals (Sweden)

    John M. Irvine

    2009-01-01

    Full Text Available The electrocardiogram (ECG is an emerging novel biometric for human identification. One challenge for the practical use of ECG as a biometric is minimizing the time needed to acquire user data. We present a methodology for identity verification that quantifies the minimum number of heartbeats required to authenticate an enrolled individual. The approach rests on the statistical theory of sequential procedures. The procedure extracts fiducial features from each heartbeat to compute the test statistics. Sampling of heartbeats continues until a decision is reached—either verifying that the acquired ECG matches the stored credentials of the individual or that the ECG clearly does not match the stored credentials for the declared identity. We present the mathematical formulation of the sequential procedure and illustrate the performance with measured data. The initial test was performed on a limited population, twenty-nine individuals. The sequential procedure arrives at the correct decision in fifteen heartbeats or fewer in all but one instance and in most cases the decision is reached with half as many heartbeats. Analysis of an additional 75 subjects measured under different conditions indicates similar performance. Issues of generalizing beyond the laboratory setting are discussed and several avenues for future investigation are identified.

  7. Feasibility Study of the Use of Thiosulfate as Extractant Agent in the Electrokinetic Remediation of a Soil Contaminated by Mercury from Almadén

    DEFF Research Database (Denmark)

    Subires-Muñoz, José Diego; García-Rubio, Ana; Vereda-Alonso, Carlos;

    2010-01-01

    Natural soils are rather complex, making the predictability of the behavior of some remediation techniques very complicated. In this paper, the remediation of a Hg contaminated soil close to Almadén using a thiosulfate solution as extractant agent is studied. In addition, the use of the BCR extra...

  8. Sequential injection determination of nitrate in vegetables by spectrophotometry with inline cadmium reduction

    OpenAIRE

    Oliveira, Sara M.; Lopes, Teresa I. M. S.; Rangel, António O. S. S.

    2007-01-01

    A sequential injection system for the determination of nitrate (NO3 2) in vegetables was developed to automate this determination, allowing for substantially reduced reagent consumption and generated waste using low-cost equipment. After extraction with water and filtration, the extracted nitrate is reduced inline to nitrite in a copperized cadmium (Cd) column and determined as nitrite. According to the Griess–Ilosvay reaction, nitrate is diazotized with sulfanilamide and coupled wit...

  9. Sequential bilateral retinal artery occlusion

    Directory of Open Access Journals (Sweden)

    Padrón-Pérez N

    2014-04-01

    Full Text Available Noel Padrón-Pérez,1 Janny Rosario Aronés,2 Silvia Muñoz,1 Luis Arias-Barquet,1 Jorge Arruga1,31Department of Ophthalmology, Hospital Universitari de Bellvitge, 2Hospital de l'Esperança – Parc de Salut Mar, 3Institut Català de Retina, Barcelona, SpainAbstract: An 86 year old woman experienced a sequential bilateral loss of vision over a period of less than 24 hours. Clinical findings and complementary studies suggested a bilateral atherogenic embolic event. Initially, she presented a superior branch retinal artery occlusion in her right eye followed by a central retinal artery occlusion with cilioretinal artery sparing in her left eye. Some conservative maneuvers performed did not improve visual acuity in the left eye. Supra-aortic Doppler ultrasonography revealed mild right internal carotid artery stenosis and moderate left internal carotid artery stenosis with a small, smooth, and homogeneous plaque. The transthoracic echocardiography showed a severe calcification of the mitral valve with a mild-moderate rim of stenosis. Central retinal artery occlusion and branch retinal artery occlusion are characterized by painless monocular loss of vision. Clinical approach and management attempt to treat the acute event, find the source of the vascular occlusion, and prevent further vascular events from occurring. Giant cell arteritis is a potentially treatable cause of central retinal artery occlusion and should be excluded in every single patient over 50 years old.Keywords: loss of vision, branch retinal artery occlusion, central retinal artery occlusion, Hollenhorst plaque

  10. Learning Orthographic Structure With Sequential Generative Neural Networks.

    Science.gov (United States)

    Testolin, Alberto; Stoianov, Ivilin; Sperduti, Alessandro; Zorzi, Marco

    2016-04-01

    Learning the structure of event sequences is a ubiquitous problem in cognition and particularly in language. One possible solution is to learn a probabilistic generative model of sequences that allows making predictions about upcoming events. Though appealing from a neurobiological standpoint, this approach is typically not pursued in connectionist modeling. Here, we investigated a sequential version of the restricted Boltzmann machine (RBM), a stochastic recurrent neural network that extracts high-order structure from sensory data through unsupervised generative learning and can encode contextual information in the form of internal, distributed representations. We assessed whether this type of network can extract the orthographic structure of English monosyllables by learning a generative model of the letter sequences forming a word training corpus. We show that the network learned an accurate probabilistic model of English graphotactics, which can be used to make predictions about the letter following a given context as well as to autonomously generate high-quality pseudowords. The model was compared to an extended version of simple recurrent networks, augmented with a stochastic process that allows autonomous generation of sequences, and to non-connectionist probabilistic models (n-grams and hidden Markov models). We conclude that sequential RBMs and stochastic simple recurrent networks are promising candidates for modeling cognition in the temporal domain. PMID:26073971

  11. BCR CDR3 length distributions differ between blood and spleen and between old and young patients, and TCR distributions can be used to detect myelodysplastic syndrome

    International Nuclear Information System (INIS)

    Complementarity-determining region 3 (CDR3) is the most hyper-variable region in B cell receptor (BCR) and T cell receptor (TCR) genes, and the most critical structure in antigen recognition and thereby in determining the fates of developing and responding lymphocytes. There are millions of different TCR Vβ chain or BCR heavy chain CDR3 sequences in human blood. Even now, when high-throughput sequencing becomes widely used, CDR3 length distributions (also called spectratypes) are still a much quicker and cheaper method of assessing repertoire diversity. However, distribution complexity and the large amount of information per sample (e.g. 32 distributions of the TCRα chain, and 24 of TCRβ) calls for the use of machine learning tools for full exploration. We have examined the ability of supervised machine learning, which uses computational models to find hidden patterns in predefined biological groups, to analyze CDR3 length distributions from various sources, and distinguish between experimental groups. We found that (a) splenic BCR CDR3 length distributions are characterized by low standard deviations and few local maxima, compared to peripheral blood distributions; (b) healthy elderly people's BCR CDR3 length distributions can be distinguished from those of the young; and (c) a machine learning model based on TCR CDR3 distribution features can detect myelodysplastic syndrome with approximately 93% accuracy. Overall, we demonstrate that using supervised machine learning methods can contribute to our understanding of lymphocyte repertoire diversity. (paper)

  12. Epidemiologic study on survival of chronic myeloid leukemia and Ph(+) acute lymphoblastic leukemia patients with BCR-ABL T315I mutation

    DEFF Research Database (Denmark)

    Nicolini, Franck E; Mauro, Michael J; Martinelli, Giovanni;

    2009-01-01

    The BCR-ABL T315I mutation represents a major mechanism of resistance to tyrosine kinase inhibitors (TKIs). The objectives of this retrospective observational study were to estimate overall and progression-free survival for chronic myeloid leukemia in chronic-phase (CP), accelerated-phase (AP), o...

  13. Clonality Analysis of Immunoglobulin Gene Rearrangement by Next-Generation Sequencing in Endemic Burkitt Lymphoma Suggests Antigen Drive Activation of BCR as Opposed to Sporadic Burkitt Lymphoma

    Science.gov (United States)

    Amato, Teresa; Abate, Francesco; Piccaluga, Pierpaolo; Iacono, Michele; Fallerini, Chiara; Renieri, Alessandra; De Falco, Giulia; Ambrosio, Maria Raffaella; Mourmouras, Vaselious; Ogwang, Martin; Calbi, Valeria; Rabadan, Roul; Hummel, Michael; Pileri, Stefano; Bellan, Cristiana

    2016-01-01

    Objectives: Recent studies using next-generation sequencing (NGS) analysis disclosed the importance of the intrinsic activation of the B-cell receptor (BCR) pathway in the pathogenesis of sporadic Burkitt lymphoma (sBL) due to mutations of TCF3/ID3 genes. Since no definitive data are available on the genetic landscape of endemic Burkitt (eBL), we first assessed the mutation frequency of TCF3/ID3 in eBL compared with sBL and subsequently the somatic hypermutation status of the BCR to answer whether an extrinsic activation of BCR signaling could also be demonstrated in Burkitt lymphoma. Methods: We assessed the mutations of TCF3/ID3 by RNAseq and the BCR status by NGS analysis of the immunoglobulin genes (IGs). Results: We detected mutations of TCF3/ID3 in about 30% of the eBL cases. This rate is significantly lower than that detected in sBL (64%). The NGS analysis of IGs revealed intraclonal diversity, suggesting an active targeted somatic hypermutation process in eBL compared with sBL. Conclusions: These findings support the view that the antigenic pressure plays a key role in the pathogenetic pathways of eBL, which may be partially distinct from those driving sBL development. PMID:26712879

  14. Rapid Evolution to Blast Crisis Associated with a Q252H ABL1 Kinase Domain Mutation in e19a2 BCR-ABL1 Chronic Myeloid Leukaemia

    Directory of Open Access Journals (Sweden)

    Sarah L. McCarron

    2013-01-01

    Full Text Available A minority of chronic myeloid leukaemia (CML patients express variant transcripts of which the e19a2 BCR-ABL1 fusion is the most common. Instances of tyrosine kinase inhibitor (TKI resistance in e19a2 BCR-ABL1 CML patients have rarely been reported. A case of e19a2 BCR-ABL1 CML is described in whom imatinib resistance, associated with a Q252H ABL1 kinase domain mutation, became apparent soon after initiation of TKI therapy. The patient rapidly transformed to myeloid blast crisis (BC with considerable bone marrow fibrosis and no significant molecular response to a second generation TKI. The clinical course was complicated by comorbidities with the patient rapidly succumbing to advanced disease. This scenario of Q252H-associated TKI resistance with rapid BC transformation has not been previously documented in e19a2 BCR-ABL1 CML. This case highlights the considerable challenges remaining in the management of TKI-resistant BC CML, particularly in the elderly patient.

  15. Sensitive detection of pre-existing BCR-ABL kinase domain mutations in CD34+ cells of newly diagnosed chronic-phase chronic myeloid leukemia patients is associated with imatinib resistance: implications in the post-imatinib era.

    Directory of Open Access Journals (Sweden)

    Zafar Iqbal

    Full Text Available BACKGROUND: BCR-ABL kinase domain mutations are infrequently detected in newly diagnosed chronic-phase chronic myeloid leukemia (CML patients. Recent studies indicate the presence of pre-existing BCR-ABL mutations in a higher percentage of CML patients when CD34+ stem/progenitor cells are investigated using sensitive techniques, and these mutations are associated with imatinib resistance and disease progression. However, such studies were limited to smaller number of patients. METHODS: We investigated BCR-ABL kinase domain mutations in CD34+ cells from 100 chronic-phase CML patients by multiplex allele-specific PCR and sequencing at diagnosis. Mutations were re-investigated upon manifestation of imatinib resistance using allele-specific PCR and direct sequencing of BCR-ABL kinase domain. RESULTS: Pre-existing BCR-ABL mutations were detected in 32/100 patients and included F311L, M351T, and T315I. After a median follow-up of 30 months (range 8-48, all patients with pre-existing BCR-ABL mutations exhibited imatinib resistance. Of the 68 patients without pre-existing BCR-ABL mutations, 24 developed imatinib resistance; allele-specific PCR and BCR-ABL kinase domain sequencing detected mutations in 22 of these patients. All 32 patients with pre-existing BCR-ABL mutations had the same mutations after manifestation of imatinib-resistance. In imatinib-resistant patients without pre-existing BCR-ABL mutations, we detected F311L, M351T, Y253F, and T315I mutations. All imatinib-resistant patients except T315I and Y253F mutations responded to imatinib dose escalation. CONCLUSION: Pre-existing BCR-ABL mutations can be detected in a substantial number of chronic-phase CML patients by sensitive allele-specific PCR technique using CD34+ cells. These mutations are associated with imatinib resistance if affecting drug binding directly or indirectly. After the recent approval of nilotinib, dasatinib, bosutinib and ponatinib for treatment of chronic myeloid

  16. Herbert Robbins and sequential analysis: invited paper

    OpenAIRE

    Siegmund, David

    2003-01-01

    This paper reviews Herbert Robbins' research in sequential analysis (excluding stochastic approximation) from 1952 until roughly 1980. Its relation to the research of his contemporaries and its impact on subsequent research are described.

  17. Sequential monitoring with conditional randomization tests

    CERN Document Server

    Plamadeala, Victoria; 10.1214/11-AOS941

    2012-01-01

    Sequential monitoring in clinical trials is often employed to allow for early stopping and other interim decisions, while maintaining the type I error rate. However, sequential monitoring is typically described only in the context of a population model. We describe a computational method to implement sequential monitoring in a randomization-based context. In particular, we discuss a new technique for the computation of approximate conditional tests following restricted randomization procedures and then apply this technique to approximate the joint distribution of sequentially computed conditional randomization tests. We also describe the computation of a randomization-based analog of the information fraction. We apply these techniques to a restricted randomization procedure, Efron's [Biometrika 58 (1971) 403--417] biased coin design. These techniques require derivation of certain conditional probabilities and conditional covariances of the randomization procedure. We employ combinatoric techniques to derive t...

  18. A note on sequential warped product manifolds

    OpenAIRE

    Shenawy, Sameh

    2015-01-01

    In this note, we introduce the notion of sequential warped product manifolds, to construct a wide variety of warped product manifolds and space-times. First we derive covariant derivative formulas for sequential warped product manifolds. Then we derive many curvature formulas such as curvature tensor, Ricci curvature and scalar curvature formulas. Some important consequences of these formulas are stated. This article also provides characterizations of geodesics and two different types of conf...

  19. Sequential Testing with Uniformly Distributed Size

    OpenAIRE

    Stanislav Anatolyev; Grigory Kosenok

    2011-01-01

    Sequential procedures of testing for structural stability do not provide enough guidance on the shape of boundaries that are used to decide on acceptance or rejection, requiring only that the overall size of the test is asymptotically controlled. We introduce and motivate a reasonable criterion for a shape of boundaries which requires that the test size be uniformly distributed over the testing period. Under this criterion, we numerically construct boundaries for most popular sequential tests...

  20. An evaluation of the accuracy and precision of X-ray microanalysis techniques using BCR-126A glass reference material

    Energy Technology Data Exchange (ETDEWEB)

    Gomez-Morilla, Inmaculada [Ion Beam Centre, Advanced Technology Institute, University of Surrey, Guildford GU2 7XH (United Kingdom)]. E-mail: i.gomez-morilla@surrey.ac.uk; Simon, Aliz [Institute of Nuclear research of the Hungarian Academy of Sciences (ATOMKI), P.O. Box 51, H-4001 Debrecen (Hungary); Simon, Rolf [Institute for Synchrotron Radiation, Forschungszentrum Karlsruhe GmbH, Hermann von Helmholtz Platz 1, Eggenstein-Leopoldshafen D-76344 (Germany); Williams, C. Terry [Department of Mineralogy, The Natural History Museum, London SW7 5BD (United Kingdom); Kiss, Arpad Z. [Institute of Nuclear research of the Hungarian Academy of Sciences (ATOMKI), P.O. Box 51, H-4001 Debrecen (Hungary); Grime, Geoffrey W. [Department of Physics, University of Surrey, Guildford GU2 7XH (United Kingdom)

    2006-08-15

    The precision and accuracy of four different X-ray analytical techniques at the micrometre level, PIXE-RBS, PIXE-PIXE, {mu}-SRXRF and WDS, have been investigated and compared. A range of different reference materials was considered for this purpose, and the glass BCR 126A was selected for the inter-comparison study, due to its homogeneity, chemical stability and elemental composition. The experimental protocols were tailored to employ the standard, optimal measurement conditions for each technique and material, but still retaining comparable measurement parameters between the different methods. The results show that the different techniques can complement each other without compromising in accuracy, and that they agree with each other to better than 5%.

  1. An evaluation of the accuracy and precision of X-ray microanalysis techniques using BCR-126A glass reference material

    International Nuclear Information System (INIS)

    The precision and accuracy of four different X-ray analytical techniques at the micrometre level, PIXE-RBS, PIXE-PIXE, μ-SRXRF and WDS, have been investigated and compared. A range of different reference materials was considered for this purpose, and the glass BCR 126A was selected for the inter-comparison study, due to its homogeneity, chemical stability and elemental composition. The experimental protocols were tailored to employ the standard, optimal measurement conditions for each technique and material, but still retaining comparable measurement parameters between the different methods. The results show that the different techniques can complement each other without compromising in accuracy, and that they agree with each other to better than 5%

  2. Perturbation of energy metabolism by fatty-acid derivative AIC-47 and imatinib in BCR-ABL-harboring leukemic cells.

    Science.gov (United States)

    Shinohara, Haruka; Kumazaki, Minami; Minami, Yosuke; Ito, Yuko; Sugito, Nobuhiko; Kuranaga, Yuki; Taniguchi, Kohei; Yamada, Nami; Otsuki, Yoshinori; Naoe, Tomoki; Akao, Yukihiro

    2016-02-01

    In Ph-positive leukemia, imatinib brought marked clinical improvement; however, further improvement is needed to prevent relapse. Cancer cells efficiently use limited energy sources, and drugs targeting cellular metabolism improve the efficacy of therapy. In this study, we characterized the effects of novel anti-cancer fatty-acid derivative AIC-47 and imatinib, focusing on cancer-specific energy metabolism in chronic myeloid leukemia cells. AIC-47 and imatinib in combination exhibited a significant synergic cytotoxicity. Imatinib inhibited only the phosphorylation of BCR-ABL; whereas AIC-47 suppressed the expression of the protein itself. Both AIC-47 and imatinib modulated the expression of pyruvate kinase M (PKM) isoforms from PKM2 to PKM1 through the down-regulation of polypyrimidine tract-binding protein 1 (PTBP1). PTBP1 functions as alternative splicing repressor of PKM1, resulting in expression of PKM2, which is an inactive form of pyruvate kinase for the last step of glycolysis. Although inactivation of BCR-ABL by imatinib strongly suppressed glycolysis, compensatory fatty-acid oxidation (FAO) activation supported glucose-independent cell survival by up-regulating CPT1C, the rate-limiting FAO enzyme. In contrast, AIC-47 inhibited the expression of CPT1C and directly fatty-acid metabolism. These findings were also observed in the CD34(+) fraction of Ph-positive acute lymphoblastic leukemia cells. These results suggest that AIC-47 in combination with imatinib strengthened the attack on cancer energy metabolism, in terms of both glycolysis and compensatory activation of FAO. PMID:26607903

  3. Sequential leaching behaviour of some elements during chemical treatment of ceramic censorship from coal fly ash

    International Nuclear Information System (INIS)

    The extractable contents of Ca, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn were determined using a six-stage sequential leaching procedure to isolate: (1) water-soluble; (2) slightly changed organic matter; (3) carbonate; (4) Fe-Mn oxides; (5) glass and silicates; and (6) char fractions; of ceramic cenospheres (CCs) recovered from coal fly ash (FA). The leaching behaviour and modes of occurrence of the above-listed elements in CCs are discussed. The results show that this improved sequential leaching procedure applied on well characterized chemically and mineralogically CCs is promising and could be successfully used. (authors)

  4. Modern Sequential Analysis and Its Applications to Computerized Adaptive Testing

    Science.gov (United States)

    Bartroff, Jay; Finkelman, Matthew; Lai, Tze Leung

    2008-01-01

    After a brief review of recent advances in sequential analysis involving sequential generalized likelihood ratio tests, we discuss their use in psychometric testing and extend the asymptotic optimality theory of these sequential tests to the case of sequentially generated experiments, of particular interest in computerized adaptive testing. We…

  5. MicroRNA-1301-Mediated RanGAP1 Downregulation Induces BCR-ABL Nuclear Entrapment to Enhance Imatinib Efficacy in Chronic Myeloid Leukemia Cells.

    Directory of Open Access Journals (Sweden)

    Tsung-Yao Lin

    Full Text Available Chronic myeloid leukemia (CML is a myeloproliferative disease. Imatinib (IM, the first line treatment for CML, is excessively expensive and induces various side effects in CML patients. Therefore, it is essential to investigate a new strategy for improving CML therapy. Our immunoblot data revealed that RanGTPase activating protein 1 (RanGAP1 protein levels increased by approximately 30-fold in K562 cells compared with those in normal cells. RanGAP1 is one of the important components of RanGTPase system, which regulates the export of nuclear protein. However, whether RanGAP1 level variation influences BCR-ABL nuclear export is still unknown. In this report, using shRNA to downregulate RanGAP1 expression level augmented K562 cell apoptosis by approximately 40% after treatment with 250 nM IM. Immunofluorescence assay also indicated that three-fold of nuclear BCR-ABL was detected. These data suggest that BCR-ABL nuclear entrapment induced by RanGAP1 downregulation can be used to improve IM efficacy. Moreover, our qRT-PCR data indicated a trend of inverse correlation between the RanGAP1 and microRNA (miR-1301 levels in CML patients. MiR-1301, targeting the RanGAP1 3' untranslated region, decreased by approximately 100-fold in K562 cells compared with that in normal cells. RanGAP1 downregulation by miR-1301 transfection impairs BCR-ABL nuclear export to increase approximately 60% of cell death after treatment of 250 nM IM. This result was almost the same as treatment with 1000 nM IM alone. Furthermore, immunofluorescence assay demonstrated that Tyr-99 of nuclear P73 was phosphorylated accompanied with nuclear entrapment of BCR-ABL after transfection with RanGAP1 shRNA or miR-1301 in IM-treated K562 cells. Altogether, we demonstrated that RanGAP1 downregulation can mediate BCR-ABL nuclear entrapment to activate P73-dependent apoptosis pathway which is a novel strategy for improving current IM treatment for CML.

  6. A stacked sequential learning method for investigator name recognition from web-based medical articles

    Science.gov (United States)

    Zhang, Xiaoli; Zou, Jie; Le, Daniel X.; Thoma, George

    2010-01-01

    "Investigator Names" is a newly required field in MEDLINE citations. It consists of personal names listed as members of corporate organizations in an article. Extracting investigator names automatically is necessary because of the increasing volume of articles reporting collaborative biomedical research in which a large number of investigators participate. In this paper, we present an SVM-based stacked sequential learning method in a novel application - recognizing named entities such as the first and last names of investigators from online medical journal articles. Stacked sequential learning is a meta-learning algorithm which can boost any base learner. It exploits contextual information by adding the predicted labels of the surrounding tokens as features. We apply this method to tag words in text paragraphs containing investigator names, and demonstrate that stacked sequential learning improves the performance of a nonsequential base learner such as an SVM classifier.

  7. Sequential acid-/alkali-pretreatment of empty palm fruit bunch fiber.

    Science.gov (United States)

    Kim, Seonghun; Park, Jang Min; Seo, Jeong-Woo; Kim, Chul Ho

    2012-04-01

    Pretreatment processes are key technologies for generating fermentable sugars based on lignocellulosic biomass. In this study, we developed a novel method for empty palm fruit bunch fiber (EPFBF) using sequential pretreatment with dilute acid and then alkali. Dilute sulfuric acid was used in the first step, which removed 90% of the hemicellulose and 32% of the lignin, but left most of the cellulose under the optimum pretreatment condition. Sodium hydroxide was then applied in the second step, which extracted lignin effectively with a 70% delignification yield, partially disrupting the ordered fibrils of the EPFBF and thus enhancing the enzyme digestibility of the cellulose. The sequentially pretreated biomass consisted of 82% cellulose, less than 1% hemicellulose, and 30% lignin content afterward. The pretreated biomasses morphologically revealed rough, porous, and irregularly ordered surfaces for enhancing enzyme digestibility. These results indicate that the sequentially acid/alkali-pretreated EPFBF could be broadly useful as a novel biomass. PMID:22306078

  8. Correlation and Sequential Filtering with Doppler Measurements

    Institute of Scientific and Technical Information of China (English)

    WANGJianguo; HEPeikun; HANYueqiu; WUSiliang

    2004-01-01

    Two sequential filters are developed for Doppler radar measurements in the presence of correlation between range and range rate measurement errors. Two ideal linear measurement equations with the pseudo measurements are constructed via block-partitioned Cholesky factorization and the practical measurement equationswith the pseudo measurements are obtained through the direction cosine estimation and error compensation. The resulting sequential filters make the position measurement be possibly processed before the pseudo measurement and hence the more accurate direction cosine estimate can be obtained from the filtered position estimate rather than the predicted state estimate. The numerical simulations with different rangerange rate correlation coefficients show thatthe proposed two sequential filters are almost equivalent in performance but both superior to the conventional extended Kalman filter for different correlation coefficients.

  9. Batch sequential designs for computer experiments

    Energy Technology Data Exchange (ETDEWEB)

    Moore, Leslie M [Los Alamos National Laboratory; Williams, Brian J [Los Alamos National Laboratory; Loeppky, Jason L [UBC-OKANAGAN

    2009-01-01

    Computer models simulating a physical process are used in many areas of science. Due to the complex nature of these codes it is often necessary to approximate the code, which is typically done using a Gaussian process. In many situations the number of code runs available to build the Guassian process approximation is limited. When the initial design is small or the underlying response surface is complicated this can lead to poor approximations of the code output. In order to improve the fit of the model, sequential design strategies must be employed. In this paper we introduce two simple distance based metrics that can be used to augment an initial design in a batch sequential manner. In addition we propose a sequential updating strategy to an orthogonal array based Latin hypercube sample. We show via various real and simulated examples that the distance metrics and the extension of the orthogonal array based Latin hypercubes work well in practice.

  10. Test generation for highly sequential circuits

    Science.gov (United States)

    Ghosh, Abhijit; Devadas, Srinivas; Newton, A. Richard

    1989-08-01

    We address the problem of generating test sequences for stuck-at faults in non-scan synchronous sequential circuits. We present a novel test procedure that exploits both the structure of the combinational logic in the circuit as well as the sequential behavior of the circuit. In contrast to previous approaches, we decompose the problem of sequential test generation into three subproblems of combinational test generation, fault-free state justification and fault-free state differentiation. We describe fast algorithms for state justification and state differentiation using the ON-sets and OFF-sets of flip-flop inputs and primary outputs. The decomposition of the testing problems into three subproblems rather than the traditional two, performing the justification and differentiation steps on the fault free rather than the faulty machine and the use of efficient techniques for cube intersection results in significant performance improvements over previous approaches.

  11. Predicting quantitative genetic interactions by means of sequential matrix approximation.

    Directory of Open Access Journals (Sweden)

    Aki P Järvinen

    Full Text Available Despite the emerging experimental techniques for perturbing multiple genes and measuring their quantitative phenotypic effects, genetic interactions have remained extremely difficult to predict on a large scale. Using a recent high-resolution screen of genetic interactions in yeast as a case study, we investigated whether the extraction of pertinent information encoded in the quantitative phenotypic measurements could be improved by computational means. By taking advantage of the observation that most gene pairs in the genetic interaction screens have no significant interactions with each other, we developed a sequential approximation procedure which ranks the mutation pairs in order of evidence for a genetic interaction. The sequential approximations can efficiently remove background variation in the double-mutation screens and give increasingly accurate estimates of the single-mutant fitness measurements. Interestingly, these estimates not only provide predictions for genetic interactions which are consistent with those obtained using the measured fitness, but they can even significantly improve the accuracy with which one can distinguish functionally-related gene pairs from the non-interacting pairs. The computational approach, in general, enables an efficient exploration and classification of genetic interactions in other studies and systems as well.

  12. Mining Sequential Update Summarization with Hierarchical Text Analysis

    Directory of Open Access Journals (Sweden)

    Chunyun Zhang

    2016-01-01

    Full Text Available The outbreak of unexpected news events such as large human accident or natural disaster brings about a new information access problem where traditional approaches fail. Mostly, news of these events shows characteristics that are early sparse and later redundant. Hence, it is very important to get updates and provide individuals with timely and important information of these incidents during their development, especially when being applied in wireless and mobile Internet of Things (IoT. In this paper, we define the problem of sequential update summarization extraction and present a new hierarchical update mining system which can broadcast with useful, new, and timely sentence-length updates about a developing event. The new system proposes a novel method, which incorporates techniques from topic-level and sentence-level summarization. To evaluate the performance of the proposed system, we apply it to the task of sequential update summarization of temporal summarization (TS track at Text Retrieval Conference (TREC 2013 to compute four measurements of the update mining system: the expected gain, expected latency gain, comprehensiveness, and latency comprehensiveness. Experimental results show that our proposed method has good performance.

  13. Dihydroazulene photoswitch operating in sequential tunneling regime

    DEFF Research Database (Denmark)

    Broman, Søren Lindbæk; Lara-Avila, Samuel; Thisted, Christine Lindbjerg;

    2012-01-01

    to electrodes so that the electron transport goes by sequential tunneling. To assure weak coupling, the DHA switching kernel is modified by incorporating p-MeSC6H4 end-groups. Molecules are prepared by Suzuki cross-couplings on suitable halogenated derivatives of DHA. The synthesis presents an...... VHF. One derivative, incorporating a p-MeSC6H4 anchoring group in one end, has been placed in a silver nanogap. Conductance measurements justify that transport through both DHA (high resistivity) and VHF (low resistivity) forms goes by sequential tunneling. The switching is fairly reversible and...

  14. Asynchronous sequential machine design and analysis

    CERN Document Server

    Tinder, Richard

    2009-01-01

    Asynchronous Sequential Machine Design and Analysis provides a lucid, in-depth treatment of asynchronous state machine design and analysis presented in two parts: Part I on the background fundamentals related to asynchronous sequential logic circuits generally, and Part II on self-timed systems, high-performance asynchronous programmable sequencers, and arbiters.Part I provides a detailed review of the background fundamentals for the design and analysis of asynchronous finite state machines (FSMs). Included are the basic models, use of fully documented state diagrams, and the design and charac

  15. Conversion from Excel into Aleph sequential

    OpenAIRE

    Renaville, François; Thirion, Paul

    2009-01-01

    Libraries must sometimes load records that are not available to them in a bibliographic format standard (Marc21, Unimarc...): integration of the book database of an academic research center, list of new e-journals bought by the library... This can make the conversion procedure of the data to the Aleph sequential format quite hard. Sometimes the records are only available in Excel. This poster explains how to convert easily in a few steps an Excel file into Aleph sequential in order to load re...

  16. Text Classification: A Sequential Reading Approach

    CERN Document Server

    Dulac-Arnold, Gabriel; Gallinari, Patrick

    2011-01-01

    We propose to model the text classification process as a sequential decision process. In this process, an agent learns to classify documents into topics while reading the document sentences sequentially and learns to stop as soon as enough information was read for deciding. The proposed algorithm is based on a modelisation of Text Classification as a Markov Decision Process and learns by using Reinforcement Learning. Experiments on four different classical mono-label corpora show that the proposed approach performs comparably to classical SVM approaches for large training sets, and better for small training sets. In addition, the model automatically adapts its reading process to the quantity of training information provided.

  17. Probing Angular Correlations in Sequential Double Ionization

    International Nuclear Information System (INIS)

    We study electron correlation in sequential double ionization of noble gas atoms and HCl in intense, femtosecond laser pulses. We measure the photoelectron angular distributions of Ne+ relative to the first electron in a pump-probe experiment with 8 fs, 800 nm, circularly polarized laser pulses at a peak intensity of a few 1015 W/cm2. Using a linear-linear pump-probe setup, we further study He, Ar, and HCl. We find a clear angular correlation between the two ionization steps in the sequential double ionization intensity regime.

  18. 2DPUF: A sequential gaussian puff model

    Energy Technology Data Exchange (ETDEWEB)

    Addis, R.P.; O`Steen, B.L.

    1990-12-31

    This report documents the Environmental Transport Section`s (ETS) two-dimensional, sequential gaussian puff transport and dispersion model for emergency response. The sequential puff scheme is described, and the dispersion equations are presented. The advantages of this model over the ETS`s PUFF/PLUME model are discussed. Options are calculating a two-dimensional wind field, interpolation procedures, and the wind field grid are described. The various grid systems for puff transport calculations and dose estimates are also described. A flow diagram for the modules comprising the 2DPUF code and a description of each module is presented.

  19. 2DPUF: A sequential gaussian puff model

    Energy Technology Data Exchange (ETDEWEB)

    Addis, R.P.; O' Steen, B.L.

    1990-01-01

    This report documents the Environmental Transport Section's (ETS) two-dimensional, sequential gaussian puff transport and dispersion model for emergency response. The sequential puff scheme is described, and the dispersion equations are presented. The advantages of this model over the ETS's PUFF/PLUME model are discussed. Options are calculating a two-dimensional wind field, interpolation procedures, and the wind field grid are described. The various grid systems for puff transport calculations and dose estimates are also described. A flow diagram for the modules comprising the 2DPUF code and a description of each module is presented.

  20. Extramedullary blast crisis as initial presentation in chronic myeloid leukemia with the e1a2 BCR-ABL1 transcript: A case report

    Science.gov (United States)

    AI, DI; LIU, WEI; LU, GARY; PATEL, KEYUR PRAVINCHANDRA; CHEN, ZI

    2015-01-01

    A 23-year-old woman presented with enlarged right inguinal lymph nodes. The pathological examination of the nodes revealed infiltration by myeloid sarcoma. A bone marrow smear and biopsy revealed cytogenetic abnormalities, with 46,XX,t(9;22) and chronic myeloid leukemia (CML) was diagnosed. The e1a2 BCR-ABL1 fusion transcript was detected. The patient received imatinib-based combined chemotherapy, allogeneic hematopoietic stem cell transplantation, donor lymphocyte infusions and dasatinib treatment. The patient achieved complete response and has remained leukemia-free for >48 months. To the best of our knowledge, this is the first case report of CML with the e1a2 BCR-ABL1 transcript, with extramedullary blast crisis as the initial presentation. The aim of the present study was to discuss this special case with reference to the literature. PMID:26807241

  1. Conventional and fluorescence in situ hybridization analysis of three-way complex BCR-ABL rearrangement in a chronic myeloid leukemia patient

    Directory of Open Access Journals (Sweden)

    Ganguly Bani

    2007-01-01

    Full Text Available Chromosomal analysis was carried out in bone marrow sample of an 11-year-old girl suspected of myeloproliferative disorder. Conventional G-banding study detected a complex three-way translocation involving 7, 9 and 22, which has resulted in the formation of a variant Philadelphia chromosome causing rearrangement of abl and bcr genes in 87% cells. Fluorescence in situ hybridization (FISH confirmed the fusion of bcr-abl oncogene. Thus the bone marrow karyotype was observed as 46,XX (13% / 46,XX,t(7;9;22(q11;q34;q11 (87%. Hyperdiploidy was present in two cells. In this study, both conventional cytogenetic and FISH diagnosis proved to be significant to identify the variant nature of the Philadelphia chromosome and hyperdiploid condition for introduction of a suitable treatment regimen and estimation of life expectancy of the young girl.

  2. The chimeric ubiquitin ligase SH2-U-box inhibits the growth of imatinib-sensitive and resistant CML by targeting the native and T315I-mutant BCR-ABL.

    Science.gov (United States)

    Ru, Yi; Wang, Qinhao; Liu, Xiping; Zhang, Mei; Zhong, Daixing; Ye, Mingxiang; Li, Yuanchun; Han, Hua; Yao, Libo; Li, Xia

    2016-01-01

    Chronic myeloid leukemia (CML) is characterized by constitutively active fusion protein tyrosine kinase BCR-ABL. Although the tyrosine kinase inhibitor (TKI) against BCR-ABL, imatinib, is the first-line therapy for CML, acquired resistance almost inevitably emerges. The underlying mechanism are point mutations within the BCR-ABL gene, among which T315I is notorious because it resists to almost all currently available inhibitors. Here we took use of a previously generated chimeric ubiquitin ligase, SH2-U-box, in which SH2 from the adaptor protein Grb2 acts as a binding domain for activated BCR-ABL, while U-box from CHIP functions as an E3 ubiquitin ligase domain, so as to target the ubiquitination and degradation of both native and T315I-mutant BCR-ABL. As such, SH2-U-box significantly inhibited proliferation and induced apoptosis in CML cells harboring either the wild-type or T315I-mutant BCR-ABL (K562 or K562R), with BCR-ABL-dependent signaling pathways being repressed. Moreover, SH2-U-box worked in concert with imatinib in K562 cells. Importantly, SH2-U-box-carrying lentivirus could markedly suppress the growth of K562-xenografts in nude mice or K562R-xenografts in SCID mice, as well as that of primary CML cells. Collectively, by degrading the native and T315I-mutant BCR-ABL, the chimeric ubiquitin ligase SH2-U-box may serve as a potential therapy for both imatinib-sensitive and resistant CML. PMID:27329306

  3. Phase Space Structures of k-threshold Sequential Dynamical Systems

    CERN Document Server

    Rani, Raffaele

    2011-01-01

    Sequential dynamical systems (SDS) are used to model a wide range of processes occurring on graphs or networks. The dynamics of such discrete dynamical systems is completely encoded by their phase space, a directed graph whose vertices and edges represent all possible system configurations and transitions between configurations respectively. Direct calculation of the phase space is in most cases a computationally demanding task. However, for some classes of SDS one can extract information on the connected component structure of phase space from the constituent elements of the SDS, such as its base graph and vertex functions. We present a number of novel results about the connected component structure of the phase space for k-threshold dynamical system with binary state spaces. We establish relations between the structure of the components, the threshold value, and the update sequence. Also fixed-point reachability from garden of eden configurations is investigated and upper bounds for the length of paths in t...

  4. BCR-ABL transcript variations in chronic phase chronic myelogenous leukemia patients on imatinib first-line: Possible role of the autologous immune system.

    Science.gov (United States)

    Clapp, Geoffrey D; Lepoutre, Thomas; Nicolini, Franck E; Levy, Doron

    2016-05-01

    Many chronic myelogenous leukemia (CML) patients in chronic phase who respond well to imatinib therapy show fluctuations in their leukemic loads in the long-term. We developed a mathematical model of CML that incorporates the intervention of an autologous immune response. Our results suggest that the patient's immune system plays a crucial role in imatinib therapy in maintaining disease control over time. The observed BCR-ABL/ABL oscillations in such patients provide a signature of the autologous immune response. PMID:27467931

  5. Multidimensional single-cell analysis of BCR signaling reveals proximal activation defect as a hallmark of chronic lymphocytic leukemia B cells.

    Directory of Open Access Journals (Sweden)

    M Lia Palomba

    Full Text Available PURPOSE: Chronic Lymphocytic Leukemia (CLL is defined by a perturbed B-cell receptor-mediated signaling machinery. We aimed to model differential signaling behavior between B cells from CLL and healthy individuals to pinpoint modes of dysregulation. EXPERIMENTAL DESIGN: We developed an experimental methodology combining immunophenotyping, multiplexed phosphospecific flow cytometry, and multifactorial statistical modeling. Utilizing patterns of signaling network covariance, we modeled BCR signaling in 67 CLL patients using Partial Least Squares Regression (PLSR. Results from multidimensional modeling were validated using an independent test cohort of 38 patients. RESULTS: We identified a dynamic and variable imbalance between proximal (pSYK, pBTK and distal (pPLCγ2, pBLNK, ppERK phosphoresponses. PLSR identified the relationship between upstream tyrosine kinase SYK and its target, PLCγ2, as maximally predictive and sufficient to distinguish CLL from healthy samples, pointing to this juncture in the signaling pathway as a hallmark of CLL B cells. Specific BCR pathway signaling signatures that correlate with the disease and its degree of aggressiveness were identified. Heterogeneity in the PLSR response variable within the B cell population is both a characteristic mark of healthy samples and predictive of disease aggressiveness. CONCLUSION: Single-cell multidimensional analysis of BCR signaling permitted focused analysis of the variability and heterogeneity of signaling behavior from patient-to-patient, and from cell-to-cell. Disruption of the pSYK/pPLCγ2 relationship is uncovered as a robust hallmark of CLL B cell signaling behavior. Together, these observations implicate novel elements of the BCR signal transduction as potential therapeutic targets.

  6. Location of CTP-OD1-HA and CTP-OD2-HA fusion peptide in K562 cells and its interaction with BCR-ABL protein

    Directory of Open Access Journals (Sweden)

    Heng XIAO

    2013-11-01

    Full Text Available Objective To investigate the intracellular location of cytoplasmic transduction peptide-oligomerization domain 1-hemagglutinin (CTP-OD1-HA and cytoplasmic transduction peptide-oligomerization domain 2-hemagglutinin (CTP-OD2-HA fusion peptide and interaction with BCR-ABL protein in chronic myelocytic leukemia (CML K562 cells. Methods The prepared CTP-OD1-HA and CTP-OD2-HA fusion peptide were transduced into K562 cells, and the cytoplasmic transduction peptideoligomerization domain-hemagglutinin (CTP-OD-HA peptide was used as positive control, and cytoplasmic transduction peptidehemagglutinin (CTP-HA and PBS were used as negative control. The intracellular location of the fusion peptide was demonstrated by immunofluorescence and Western blotting. The interactions between the fusion peptides and BCR-ABL protein were detected by His-pull down and CoIP test. Results Immunofluorescence assay showed that both fusion peptides CTP-OD1-HA and CTP-OD2-HA could penetrate the cell membrane, and they were mainly localized in cytoplasm. Western blotting also confirmed the existence of the two fusion peptides in the cytoplasm. His-pull down showed that CTP-OD1-HA and CTP-OD2-HA could directly bind BCRABL protein outside the cells, and CoIP experiment showed that both fusion peptides could interact with BCR-ABL protein and form complex in the K562 cells. The negative control CTP-HA fusion peptide and PBS showed no such effects. Conclusion CTPOD1-HA and CTP-OD2-HA fusion peptides can successfully target into CML K562 cells and locate in cytoplasm, and it interacts with BCR-ABL protein. DOI: 10.11855/j.issn.0577-7402.2013.11.006

  7. Coupling a universal DNA circuit with graphene sheets/polyaniline/AuNPs nanocomposites for the detection of BCR/ABL fusion gene

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Xueping [Key Laboratory of Laboratory Medical Diagnostics of Education, Department of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016 (China); Wang, Li [Key Laboratory of Laboratory Medical Diagnostics of Education, Department of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016 (China); Department of Medical Laboratory, Chongqing Emergency Medical Center (Chongqing The Fourth Hospital), Chongqing, 400016 (China); Sheng, Shangchun [The No.2 Peoples' Hospital of Yibin, Sichuan, 644000 (China); Wang, Teng; Yang, Juan [Key Laboratory of Laboratory Medical Diagnostics of Education, Department of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016 (China); Xie, Guoming, E-mail: guomingxie@cqmu.edu.cn [Key Laboratory of Laboratory Medical Diagnostics of Education, Department of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016 (China); Feng, Wenli, E-mail: fengwlcqmu@sina.com [Key Laboratory of Laboratory Medical Diagnostics of Education, Department of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016 (China)

    2015-08-19

    This article described a novel method by coupling a universal DNA circuit with graphene sheets/polyaniline/AuNPs nanocomposites (GS/PANI/AuNPs) for highly sensitive and specific detection of BCR/ABL fusion gene (bcr/abl) in chronic myeloid leukemia (CML). DNA circuit known as catalyzed hairpin assembly (CHA) is enzyme-free and can be simply operated to achieve exponential amplification, which has been widely employed in biosensing. However, application of CHA has been hindered by the need of specially redesigned sequences for each single-stranded DNA input. Herein, a transducer hairpin (HP) was designed to obtain a universal DNA circuit with favorable signal-to-background ratio. To further improve signal amplification, GS/PANI/AuNPs with excellent conductivity and enlarged effective area were introduced into this DNA circuit. Consequently, by combining the advantages of CHA and GS/PANI/AuNPs, bcr/abl could be detected in a linear range from 10 pM to 20 nM with a detection limit of 1.05 pM. Moreover, this protocol showed excellent specificity, good stability and was successfully applied for the detection of real sample, which demonstrated its great potential in clinical application. - Highlights: • A transducer hairpin was designed to improve the versatility of DNA circuit. • GS/PANI/AuNPs were introduced to the DNA circuit for further signal amplification. • The established biosensor displayed high sensitivity and good specificity.

  8. Coupling a universal DNA circuit with graphene sheets/polyaniline/AuNPs nanocomposites for the detection of BCR/ABL fusion gene

    International Nuclear Information System (INIS)

    This article described a novel method by coupling a universal DNA circuit with graphene sheets/polyaniline/AuNPs nanocomposites (GS/PANI/AuNPs) for highly sensitive and specific detection of BCR/ABL fusion gene (bcr/abl) in chronic myeloid leukemia (CML). DNA circuit known as catalyzed hairpin assembly (CHA) is enzyme-free and can be simply operated to achieve exponential amplification, which has been widely employed in biosensing. However, application of CHA has been hindered by the need of specially redesigned sequences for each single-stranded DNA input. Herein, a transducer hairpin (HP) was designed to obtain a universal DNA circuit with favorable signal-to-background ratio. To further improve signal amplification, GS/PANI/AuNPs with excellent conductivity and enlarged effective area were introduced into this DNA circuit. Consequently, by combining the advantages of CHA and GS/PANI/AuNPs, bcr/abl could be detected in a linear range from 10 pM to 20 nM with a detection limit of 1.05 pM. Moreover, this protocol showed excellent specificity, good stability and was successfully applied for the detection of real sample, which demonstrated its great potential in clinical application. - Highlights: • A transducer hairpin was designed to improve the versatility of DNA circuit. • GS/PANI/AuNPs were introduced to the DNA circuit for further signal amplification. • The established biosensor displayed high sensitivity and good specificity

  9. Low expression of miR-196b enhances the expression of BCR-ABL1 and HOXA9 oncogenes in chronic myeloid leukemogenesis.

    Directory of Open Access Journals (Sweden)

    Yue Liu

    Full Text Available MicroRNAs (miRNAs can function as tumor suppressors or oncogene promoters during tumor development. In this study, low levels of expression of miR-196b were detected in patients with chronic myeloid leukemia. Bisulfite genomic sequencing PCR and methylation-specific PCR were used to examine the methylation status of the CpG islands in the miR-196b promoter in K562 cells, patients with leukemia and healthy individuals. The CpG islands showed more methylation in patients with chronic myeloid leukemia compared with healthy individuals (P<0.05, which indicated that low expression of miR-196b may be associated with an increase in the methylation of CpG islands. The dual-luciferase reporter assay system demonstrated that BCR-ABL1 and HOXA9 are the target genes of miR-196b, which was consistent with predictions from bioinformatics software analyses. Further examination of cell function indicated that miR-196b acts to reduce BCR-ABL1 and HOXA9 protein levels, decrease cell proliferation rate and retard the cell cycle. A low level of expression of miR-196b can cause up-regulation of BCR-ABL1 and HOXA9 expression, which leads to the development of chronic myeloid leukemia. MiR-196b may represent an effective target for chronic myeloid leukemia therapy.

  10. Drying leather with vacuum and toggling sequentially

    Science.gov (United States)

    We investigated a drying method that will enable leather to be dried under vacuum and stretch sequentially to improve area yield. Vacuum drying offers fast speed at a low temperature, which would be advantageous to heat-vulnerable chrome-free leather. Adding a toggle action after vacuum drying cou...

  11. SEQUENTIAL SURVEILLANCE OF THE TANGENCY PORTFOLIO WEIGHTS

    OpenAIRE

    OLHA BODNAR

    2009-01-01

    In this paper we derive sequential procedures for monitoring the structure of the tangency portfolio. A new measure of the distance between the estimated weights and the weights of the holding portfolio is suggested which is used in the derivation of the control schemes. The results are applied in a situation that is practically relevant.

  12. Percutaneous Intervention of Sequential Coronary Venous Graft

    OpenAIRE

    Zeki DOGAN; Karabulut, Ahmet; Uzunlar, Bulent

    2014-01-01

    We present a case with coronary bypass grafts in which venous graft was anastomosed to obtuse marginal (OM) 1 and OM2 branches sequentially. We performed percutaneous intervention to the proximal circumflex (CX), OM1, and bridging segment of the venous graft. Finally, bridging segment of the venous graft began to function as a CX body extending between the OM1 and OM2.

  13. Asymmetric Taxation under Incremental and Sequential Investment

    OpenAIRE

    Panteghini, Paolo

    2002-01-01

    This article discusses the effects of an asymmetric tax scheme on incremental and sequential investment strategies. The tax base is equal to the firm’s return, net of an imputation rate. When the firm’s return is less than this rate, however, no tax refunds are allowed. This scheme is neutral under both income and capital uncertainty.

  14. Comprehensive sequential interventional therapy for hepatocellular carcinoma

    Institute of Scientific and Technical Information of China (English)

    ZHANG Liang; FAN Wei-jun; HUANG Jin-hua; LI Chuan-xing; ZHAO Ming; WANG Li-gang; TANG Tian

    2009-01-01

    Background Since the 1980s, various approaches to interventional therapy have been developed, with the development and achievement of medical imaging technology. This study aimed to evaluate the effectiveness of comprehensive sequential interventional therapy especially personal therapeutic plan in 53 radical cure patients with hepatocellular carcinoma (HCC).Methods From January 2003 to January 2005, a total of 203 patients with HCC received sequential interventional treatment in our hospital. Fifty-three patients achieved radical cure outcomes. Those patients were treated with transcatheter arterial chemoembolization (TACE), radiofrequency ablation (RFA), percutaneous ethanol injection (PEI), or high intensity focused ultrasound (HIFU), sequentially and in combination depending on their clinical and pathological features. PET-CT was used to evaluate, assess, and guide treatment.Results Based on the imaging and serological data, all the patients had a personal therapeutic plan. The longest follow-up time was 24 months, the shortest was 6 months, and mean survival time was 16.5 months.Conclusion Comprehensive sequential interventional therapy especially personal therapeutic plan for HCC play roles in interventional treatment of HCC in middle or advanced stage.

  15. Mathematical Problem Solving through Sequential Process Analysis

    Science.gov (United States)

    Codina, A.; Cañadas, M. C.; Castro, E.

    2015-01-01

    Introduction: The macroscopic perspective is one of the frameworks for research on problem solving in mathematics education. Coming from this perspective, our study addresses the stages of thought in mathematical problem solving, offering an innovative approach because we apply sequential relations and global interrelations between the different…

  16. The sequential decay of a fire sausage

    International Nuclear Information System (INIS)

    We study the sequential decay of a fire sausage in the framework of quark Geometrodynamics (QGD). Our results are then applied to the description of hadronic final states in e+e- annihilation at high energy. Agreement with experimental findings appears rather remarkable. (orig.)

  17. Terminating Sequential Delphi Survey Data Collection

    Science.gov (United States)

    Kalaian, Sema A.; Kasim, Rafa M.

    2012-01-01

    The Delphi survey technique is an iterative mail or electronic (e-mail or web-based) survey method used to obtain agreement or consensus among a group of experts in a specific field on a particular issue through a well-designed and systematic multiple sequential rounds of survey administrations. Each of the multiple rounds of the Delphi survey…

  18. Compound imaging using Synthetic Aperture Sequential Beamformation

    DEFF Research Database (Denmark)

    Jensen, Casper Bo; Jensen, Jonas; Hemmsen, Martin Christian;

    2011-01-01

    Synthetic Aperture Sequential Beamforming (SASB) is a technique with low complexity and the ability to yield a more uniform lateral resolution with range. However, the presence of speckle artifacts in ultrasound images degrades the contrast. In conventional imaging speckle is reduced by using...

  19. Myeloproliferative neoplasms (BCR-ABL1 negative) and myelodysplastic/myeloproliferative neoplasms: current diagnostic principles and upcoming updates.

    Science.gov (United States)

    Geyer, J T; Orazi, A

    2016-05-01

    Since the publication of the latest World Health Organization (WHO) classification in 2008, there has been a significant effort for clarification of unresolved questions, especially with the help of the rapidly developing field of molecular genetic studies, next-generation sequencing in particular. Numerous entities within the WHO categories of myeloproliferative neoplasms (MPNs) and myelodysplastic (MDS)/MPNs have been extensively studied, with large published series attempting to characterize and better define their morphologic and molecular genetic features. This emerging genetic landscape maintains a robust correlation with the various disease entities recognized by the WHO classification scheme based on a careful integration of detailed clinical information, bone marrow and peripheral blood morphology, immunohistology, and genomics. This brief review summarizes the current guidelines as they apply to diagnosing both the classical BCR-ABL1 negative MPN (polycythemia vera, essential thrombocythemia, and primary myelofibrosis) and the more common subtypes of MDS/MPN overlap syndromes. The more important recent molecular updates as well as the upcoming changes to the current WHO classification, expected to be published in late 2016, will also be briefly reviewed. PMID:27161873

  20. Automated IR determination of petroleum products in water based on sequential injection analysis.

    Science.gov (United States)

    Falkova, Marina; Vakh, Christina; Shishov, Andrey; Zubakina, Ekaterina; Moskvin, Aleksey; Moskvin, Leonid; Bulatov, Andrey

    2016-02-01

    The simple and easy performed automated method for the IR determination of petroleum products (PP) in water using extraction-chromatographic cartridges has been developed. The method assumes two stages: on-site extraction of PP during a sampling by using extraction-chromatographic cartridges and subsequent determination of the extracted PP using sequential injection analysis (SIA) with IR detection. The appropriate experimental conditions for extraction of the dissolved in water PP and for automated SIA procedure were investigated. The calibration plot constructed using the developed procedure was linear in the range of 3-200 μg L(-1). The limit of detection (LOD), calculated from a blank test based on 3σ was 1 µg L(-1). The sample volume was 1L. The system throughput was found to be 12 h(-1). PMID:26653498