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Sample records for bay scallop argopecten

  1. The Bay Scallop, Argopecten irradians amplicostatus, in Northeastern Mexico

    OpenAIRE

    Wakida-Kusunoki, Armando T.

    2009-01-01

    The bay scallop, Argopecten irradians amplicostatus, has been present in the coastal lagoons of northeastern Mexico from Laguna Madre, Tamaulipas, to Tuxpan, Veracruz. But now, usually scarce in all lagoons, the scallop is harvested sporadically by fishermen who wade and collect them by hand and with tongs. Some are eaten by the fishermen and some are sold. They bring the fishermen about 60 pesos (5.88US$)/kg. Only the adductor muscles are eaten; they are prepared in cocktails and in cevic...

  2. Quantitative traits correlative analysis and growth comparison among different populations of bay scallop,Argopecten irradians

    Institute of Scientific and Technical Information of China (English)

    LIUBaozhong; LIANGYubo; LIUXiaolin; DONGBo; XIANGJianhai

    2004-01-01

    The shell traits and weight traits are measured in cultured populations of bay scallop, Argopecten irradians. The results of regression analysis show that the regression relationships for all the traits are significant (P0.05). The multiple regression equation is obtained to estimate live body weight and tissue weight. The above traits except anterior and posterior auricle length are used for the growth and production comparison among three cultured populations, Duncan's new multiple range procedure analysis shows that all the traits in the Lingshuiqiao (LSQ) population are much more significant than those of the other two populations (P0.05). The results indicate that the LSQ population has a higher growth rate and is expected to be more productive than the other two populations.

  3. Effect of zinc on the growth and development of larvae of bay scallop Argopecten Irradians

    Science.gov (United States)

    Lü, Yantian

    1989-12-01

    The 48-h straight-hinge larvae of Argopecten irradians were exposed for 9 days to various concentrations of zinc in seawater. The growth rate of larvae in the 50 ppb Zn mediums was 77% that of the controls, and nearly zero in the 200 ppb Zn mediums. A progressive decrease in growth and increase in larval deformity and mortality was observed with increasing zinc concentrations from 50 to 200 ppb. 50 and 100 ppb Zn resulted in delayed development of eye spot and metamorphosis and reduced numbers of larvae at both stages. All larvae subjected to higher zinc concentrations died before attaining the eye-spot stage. The zinc concentrations which caused 50% reduction in growth (G C50) and 50% mortality (LC50) were 109 and 120 ppb respectively. Growing in the medium with 100 ppb Zn, the larvae fed with Isochrysis galbana cultured in a medium with 100 ppb Zn showed more suppressed growth and development than those fed with normal food. It is suggested that zinc contaminated food has strong influence on the bay scallop larvae.

  4. Contractile properties of the striated adductor muscle in the bay scallop Argopecten irradians at several temperatures.

    Science.gov (United States)

    Olson, J M; Marsh, R L

    1993-03-01

    The isometric and isotonic contractile properties of the cross-striated adductor muscle of the bay scallop (Argopecten irradians) were measured in vitro at 10, 15 and 20 degrees C. The length at which twitch force was maximal as a function of the closed length in situ (L0/Lcl) averaged 1.38 +/- 0.01 (mean +/- S.E.M.) at 10 degrees C. This length is very close to the typical length at maximum gape during natural swimming at this temperature. Passive force was very low over the range of lengths measured here; at L0, passive force averaged approximately 0.08 N cm-2, or only 0.5% of the corresponding peak twitch force. The mean peak isometric twitch force (Ptw,max) at 10 degrees C was 21.43 +/- 0.68 N cm-2 (S.E.M.), and the ratio of peak twitch force to tetanic force (Ptw,max/P0) averaged 0.89 +/- 0.01. Temperature did not affect either twitch force (Ptw), once fatigue was taken into account, or Ptw,max/P0. In contrast, the time-related properties of twitch contractions (latent period, tL; time to peak tension, tPtw; and time from peak tension to half-relaxation, t50%R) were positively modified by temperature at all temperatures measured (Q10 > 1.8). All three properties were more temperature-sensitive over the range 10-15 degrees C than over the range 15-20 degrees C. The force-velocity relationships of the striated adductor muscle were fitted to the hyperbolic-linear (HYP-LIN) equation. The force-velocity curves of the striated adductor muscle of the scallop were strongly influenced by temperature. Maximal velocity at zero force (Vmax), and therefore maximal power output, increased significantly with temperature. The Q10 over the temperature range 10-15 degrees C (1.42) was significantly lower than that over the range 15-20 degrees C (2.41). The shape of the force-velocity relationship, assessed through comparisons of the power ratio (Wmax/VmaxP0), was not influenced by temperature.

  5. Introduction, spat-rearing and experimental culture of bay scallop, Argopecten irradians lamarck

    Science.gov (United States)

    Zhang, Fusui; He, Yichao; Liu, Xiangsheng; Ma, Jianghu; Li, Shuying; Qi, Lingxin

    1991-06-01

    Bay scallops were introduced from the east coast of the U.S. into China to shorten the economic turn-over from 2 to 1 year. Parent scallops were carried to Qingdao on Dec. 20, 1982 and stocked in indoor tanks at controlled temperature and fed with a mixture of Phaeodictylum tricornutum, Pyramimonas sp. and Chlorella sp. They spawned on Jan. 26 of the next year. The larvae were reared at a temperature of 18 21°C and fed with Isochrysis galbana, Pyramimonas sp. and Chorella sp. In 4 weeks’ growing, the spats averaged 827 μm. They attained a height of 6.9 mm on May 9. In the middle of May, the seed scallops were transferred to Luoyuan Bay in Fujian Province, and Jiaozhou Bay, as well as the area off Taiping Jiao Cape, Qingdao, Shandong Province for experimental culture in plastic netcages suspended on a single line raft. Bay scallops cultured in Luoyuan Bay grew to an averaged shell height of 10.4 mm. In Jiaozhou Bay and the Taiping Jiao Cape culture area, they grew to 50 mm in average shell height (marketable size) and 26 g in average weight by late September; and attained 59 mm in average shell height (R. 39 75 mm) and 46 g in average weight in late December. The ovary and testis could be distinguished by color in August. In early September, eggs and sperms were collected for our laboratory where the second generation of seed scallops was successfully reared to suitable size for growing outdoor and breeding. This species can be harvested within a year after fertilization of the eggs, so we consider it suitable for culture in the Yellow Sea and East China Sea. This is the first reported successful introduction of Atlantic mollusks to the China Seas.

  6. Effects of environmental oxygen deficiency on embryos and larvae of bay scallop, Argopecten irradians irradians

    Science.gov (United States)

    Chun-de, Wang; Fu-Sui, Zhang

    1995-12-01

    The experimental results showed that: 1) The embryonic development of bay scallop is inhibited at a dissolved oxygen range of 1.38-3.64×10-3 at 23°C, and completely blocked below the lower limit. 2) The tolerance of larvae to anoxia increased with larval sizes and was related to their oxygen debt. 3) The scallop larvae exhibited specific behavioral responses to oxygen deficiency, which finally led to velum disintegration and larval death. The possible relationship between environmental oxygen deficiency and the disease of disintegration of the larval velum is also discussed. In this study, considerable oxygen debt was found in bay scallop larvae, which was greater in small animals. Based on the works of previous authors, a new concept is proposed for the estimation of oxygen debt, namely, the compensatory rate of oxygen debt (CROD). This can be used in intra—or interspecific comparison of oxygen debt. The results can be helpful in the management of water quality and for the prevention of larval diseases encountered in scallop culture.

  7. Early exposure of bay scallops (Argopecten irradians to high CO₂ causes a decrease in larval shell growth.

    Directory of Open Access Journals (Sweden)

    Meredith M White

    Full Text Available Ocean acidification, characterized by elevated pCO₂ and the associated decreases in seawater pH and calcium carbonate saturation state (Ω, has a variable impact on the growth and survival of marine invertebrates. Larval stages are thought to be particularly vulnerable to environmental stressors, and negative impacts of ocean acidification have been seen on fertilization as well as on embryonic, larval, and juvenile development and growth of bivalve molluscs. We investigated the effects of high CO₂ exposure (resulting in pH = 7.39, Ω(ar = 0.74 on the larvae of the bay scallop Argopecten irradians from 12 h to 7 d old, including a switch from high CO₂ to ambient CO₂ conditions (pH = 7.93, Ω(ar = 2.26 after 3 d, to assess the possibility of persistent effects of early exposure. The survival of larvae in the high CO₂ treatment was consistently lower than the survival of larvae in ambient conditions, and was already significantly lower at 1 d. Likewise, the shell length of larvae in the high CO₂ treatment was significantly smaller than larvae in the ambient conditions throughout the experiment and by 7 d, was reduced by 11.5%. This study also demonstrates that the size effects of short-term exposure to high CO₂ are still detectable after 7 d of larval development; the shells of larvae exposed to high CO₂ for the first 3 d of development and subsequently exposed to ambientCO₂ were not significantly different in size at 3 and 7 d than the shells of larvae exposed to high CO₂ throughout the experiment.

  8. Effect of E. coli coli on Anti-disease Activities of Scallops: Argopecten irradians

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The effect of acute E. coli challenge on the anti-disease activity of scallops Argopecten irradians is examined. The treatments of scallop from which hemolymph samples were taken for study included (1) control scallops, (2) sham-injected scallops, (3) PSW-injected scallops and (4) E. coli-injected scallops. From the beginning, the anti-disease activities of scallops are determined at 12 hr and 24 hr. The concentrations of circulating hemocytes, the total serum protein concentrations and the activities of alkaline phosphatase, acid phosphatase and superoxide dismutase in the scallops Argopecten irradians are determined. Injection with E. coli results in a significant elevation in the concentration of circulating hemocytes and in the alkaline phosphatase activity and a significant decline in the total serum protein concentration and in the superoxide dismutase activity at 24 hr postchallenge. It shows that metabolism of bay scallop is expedited to adopt the challenge.

  9. A consensus microsatellite-based linkage map for the hermaphroditic bay scallop (Argopecten irradians and its application in size-related QTL analysis.

    Directory of Open Access Journals (Sweden)

    Hongjun Li

    Full Text Available Bay scallop (Argopecten irradians is one of the most economically important aquaculture species in China. In this study, we constructed a consensus microsatellite-based genetic linkage map with a mapping panel containing two hybrid backcross-like families involving two subspecies of bay scallop, A. i. irradians and A. i. concentricus. One hundred sixty-one microsatellite and one phenotypic (shell color markers were mapped to 16 linkage groups (LGs, which corresponds to the haploid chromosome number of bay scallop. The sex-specific map was 779.2 cM and 781.6 cM long in female and male, respectively, whereas the sex-averaged map spanned 849.3 cM. The average resolution of integrated map was 5.9 cM/locus and the estimated coverage was 81.3%. The proportion of distorted markers occurred more in the hybrid parents, suggesting that the segregation distortion was possibly resulted from heterospecific interaction between genomes of two subspecies of bay scallop. The overall female-to-male recombination rate was 1.13:1 across all linked markers in common to both parents, and considerable differences in recombination also existed among different parents in both families. Four size-related traits, including shell length (SL, shell height (SH, shell width (SW and total weight (TW were measured for quantitative trait loci (QTL analysis. Three significant and six suggestive QTL were detected on five LGs. Among the three significant QTL, two (qSW-10 and qTW-10, controlling SW and TW, respectively were mapped on the same region near marker AiAD121 on LG10 and explained 20.5% and 27.7% of the phenotypic variance, while the third (qSH-7, controlling SH was located on LG7 and accounted for 15.8% of the phenotypic variance. Six suggestive QTL were detected on four different LGs. The linkage map and size-related QTL obtained in this study may facilitate marker-assisted selection (MAS in bay scallop.

  10. Bay Scallop Habitat Suitability Models: Predictions over Space and Time

    Science.gov (United States)

    A survey of Lagoon Pond, Martha’s Vineyard, MA, USA was conducted in September 2005 to determine the combination of habitat factors most highly correlated with bay scallop (Argopecten irradians) abundance.

  11. Examining the Effects of Chromatic Aberration, Object Distance, and Eye Shape on Image-Formation in the Mirror-Based Eyes of the Bay Scallop Argopecten irradians.

    Science.gov (United States)

    Speiser, Daniel I; Gagnon, Yakir Luc; Chhetri, Raghav K; Oldenburg, Amy L; Johnsen, Sönke

    2016-11-01

    The eyes of scallops form images using a concave spherical mirror and contain two separate retinas, one layered on top of the other. Behavioral and electrophysiological studies indicate that the images formed by these eyes have angular resolutions of about 2°. Based on previous ray-tracing models, it has been thought that the more distal of the two retinas lies near the focal point of the mirror and that the proximal retina, positioned closer to the mirror at the back of the eye, receives light that is out-of-focus. Here, we propose three mechanisms through which both retinas may receive focused light: (1) chromatic aberration produced by the lens may cause the focal points for longer and shorter wavelengths to fall near the distal and proximal retinas, respectively; (2) focused light from near and far objects may fall on the distal and proximal retinas, respectively; and (3) the eyes of scallops may be dynamic structures that change shape to determine which retina receives focused light. To test our hypotheses, we used optical coherence tomography (OCT), a method of near-infrared optical depth-ranging, to acquire virtual cross-sections of live, intact eyes from the bay scallop Argopecten irradians Next, we used a custom-built ray-tracing model to estimate the qualities of the images that fall on an eye's distal and proximal retinas as functions of the wavelengths of light entering the eye (400-700 nm), object distances (0.01-1 m), and the overall shape of the eye. When we assume 550 nm wavelength light and object distances greater than 0.01 m, our model predicts that the angular resolutions of the distal and proximal retinas are 2° and 7°, respectively. Our model also predicts that neither chromatic aberration nor differences in object distance lead to focused light falling on the distal and proximal retinas simultaneously. However, if scallops can manipulate the shapes of their eyes, perhaps through muscle contractions, we speculate that they may be able

  12. CYTOLOGICAL COMPARISON OF GAMETOGENESIS OF SCALLOPS, ARGOPECTEN IRRADIANS AND CHLAMYS FARRERI

    Institute of Scientific and Technical Information of China (English)

    董新红; 刘保忠; 吴长功; 相建海

    2002-01-01

    Histological characteristics of gametogenesis of two kinds of scallops, gonochoric Chinese scallop, Chlamys farreri and hermaphroditic bay scallop, Argopecten irradians were investigated in this study. Spermatogenesis in C. farreri has different developmental stages: spermatogonia, primary spermatocyte, second spermatocyte, spermatid and spermatozoon. A large number of same developmental stage spermatic cells converge at a definite area of the testis. Premeiotic, previtellogenic and vitellogenic oocytes can be found during oogenesis in C. farreri, where oocyte distribution is obviously irregular. The A. irradians gonad consists of two different parts in one individual: one part functions as testis, the other as ovary. Between these two parts is a special appearance area, where a large number of spermatic cells are bound with two layers of acellular substance with many oocytes in it.

  13. CYTOLOGICAL COMPARISON OF GAMETOGENESIS OF SCALLOPS,ARGOPECTEN IRRADIANS AND CHLAMYS FARRERI

    Institute of Scientific and Technical Information of China (English)

    董新红; 刘保忠; 吴长功; 相建海

    2002-01-01

    Histological characteristics of gametogenesis of two kinds of sca llops, gonochoric Chinese scallop, Chlamys farreri and hermaphroditic bay scallop, Argopecten irradians were investigated in this study. Spermatogenesis in C. Farreri h as different developmental stages: spermatogonia, primary spermatocyte, second spermatocyte, spermatid and spermatozoon. A large number of same developmental stage spermatic cells converg e at a definite area of the testis. Premeiotic, previtellogenic and vitellogenic oocytes ca n be found during oogenesis in C. Farreri, where oocyte distribution is obviously irregular. T he A. Irradians gonad consists of two different parts in one individual: one part functions as testis, the other as ovary. Between these two parts is a special appearance area, where a large number of spermatic cells are bound with two layers of acellular substance with many oocytes in it.

  14. Sclerochronological records and daily microgrowth of the Peruvian scallop (Argopecten purpuratus, Lamarck, 1819) related to environmental conditions in Paracas Bay, Pisco, Peru

    OpenAIRE

    Aguirre Velarde, Arturo; Flye-Sainte-Marie, Jonathan; Mendo, Jaime; Jean, Fred

    2015-01-01

    International audience; We investigated the rhythm of micro-striae formation in the shell of Argopecten purpuratus and environmental influence on micro-growth increments by monitoring growth over a 98-day period between April and July 2007 under bottom and suspended culture (2m above the bottom) rearing conditions. The transfer of individuals to the study site induced the formation of a notable growth mark that allowed us to count the number of micro-striae formed between transfer and samplin...

  15. A prokaryotic mycoplasma-like organism infection in the scallop Argopecten irradians

    Institute of Scientific and Technical Information of China (English)

    ZHANG Weizhu; WU Xinzhong; SUN Jingfeng; LI Dengfeng

    2007-01-01

    Intracytoplasmic infection with a prokaryotic mycoplasma-like organism (MLO) were characterized in the scallop Argopecten irradians, and the first report of such infection in this scallop was represented. Ultrastructurally these microorganisms are usually pleomorphic and variable in morphology and size, and appear in several cell types such as small spherical body, rod-shaped bodies and longer filament-shaped body. They lack a cell wall. These observations revealed that these types of the prokaryote showed some characteristics of a mycoplasma-like organism (MLO). MLO reproduced in two ways: binary fission and budding. The results of isolation and purification showed that a large number of MLOs existed in the tissues of diseased scallops. The results of experimental infection revealed that the MLO is pathogenic to the scallop Argopecten irradians.

  16. Sclerochronological records and daily microgrowth of the Peruvian scallop (Argopecten purpuratus, Lamarck, 1819) related to environmental conditions in Paracas Bay, Pisco, Peru

    Science.gov (United States)

    Aguirre Velarde, Arturo; Flye-Sainte-Marie, Jonathan; Mendo, Jaime; Jean, Fred

    2015-05-01

    We investigated the rhythm of micro-striae formation in the shell of Argopecten purpuratus and environmental influence on micro-growth increments by monitoring growth over a 98-day period between April and July 2007 under bottom and suspended culture (2 m above the bottom) rearing conditions. The transfer of individuals to the study site induced the formation of a notable growth mark that allowed us to count the number of micro-striae formed between transfer and sampling dates. Micro-striae counts showed a deposition rate of one stria per day independent of rearing condition. This result allowed us to analyse the relationships between growth increments and environmental conditions. We therefore examined the deviations between observed growth rates and growth rates predicted from a Von Bertalanffy growth function. Cross-correlation analysis revealed significant correlations, without time-lag, between these deviations and both particulate organic carbon and nitrogen concentrations in the bottom treatment. Additionally, we observed negative correlations with temperature and current speed at this depth with time-lags of 1 and 10 days respectively. In the suspended treatment, we observed a significant negative correlation with temperature, only with a 12-day lag-time. Our results show that growth response to environmental variability is not always instantaneous. This delay can be explained by the time delay over which metabolic processes need to be performed (e.g. digestion, use/movements of reserves, growth, reproduction). Further modeling studies could help to better understand these processes.

  17. Bay Scallop Spawning, Survival, Growth Records

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Bay Scallops are selected and cultured according to criteria of growth and survival. Morphological attributes have also been selected to assess heretibility....

  18. Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification.

    Science.gov (United States)

    Ramajo, Laura; Marbà, Núria; Prado, Luis; Peron, Sophie; Lardies, Marco A; Rodriguez-Navarro, Alejandro B; Vargas, Cristian A; Lagos, Nelson A; Duarte, Carlos M

    2016-06-01

    Future ocean acidification (OA) will affect physiological traits of marine species, with calcifying species being particularly vulnerable. As OA entails high energy demands, particularly during the rapid juvenile growth phase, food supply may play a key role in the response of marine organisms to OA. We experimentally evaluated the role of food supply in modulating physiological responses and biomineralization processes in juveniles of the Chilean scallop, Argopecten purpuratus, that were exposed to control (pH ~ 8.0) and low pH (pH ~ 7.6) conditions using three food supply treatments (high, intermediate, and low). We found that pH and food levels had additive effects on the physiological response of the juvenile scallops. Metabolic rates, shell growth, net calcification, and ingestion rates increased significantly at low pH conditions, independent of food. These physiological responses increased significantly in organisms exposed to intermediate and high levels of food supply. Hence, food supply seems to play a major role modulating organismal response by providing the energetic means to bolster the physiological response of OA stress. On the contrary, the relative expression of chitin synthase, a functional molecule for biomineralization, increased significantly in scallops exposed to low food supply and low pH, which resulted in a thicker periostracum enriched with chitin polysaccharides. Under reduced food and low pH conditions, the adaptive organismal response was to trade-off growth for the expression of biomineralization molecules and altering of the organic composition of shell periostracum, suggesting that the future performance of these calcifiers will depend on the trajectories of both OA and food supply. Thus, incorporating a suite of traits and multiple stressors in future studies of the adaptive organismal response may provide key insights on OA impacts on marine calcifiers. © 2015 John Wiley & Sons Ltd.

  19. Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification

    KAUST Repository

    Ramajo, Laura

    2015-12-08

    Future ocean acidification (OA) will affect physiological traits of marine species, with calcifying species being particularly vulnerable. As OA entails high energy demands, particularly during the rapid juvenile growth phase, food supply may play a key role in the response of marine organisms to OA. We experimentally evaluated the role of food supply in modulating physiological responses and biomineralization processes in juveniles of the Chilean scallop, Argopecten purpuratus, that were exposed to control (pH ~ 8.0) and low pH (pH ~ 7.6) conditions using three food supply treatments (high, intermediate, and low). We found that pH and food levels had additive effects on the physiological response of the juvenile scallops. Metabolic rates, shell growth, net calcification, and ingestion rates increased significantly at low pH conditions, independent of food. These physiological responses increased significantly in organisms exposed to intermediate and high levels of food supply. Hence, food supply seems to play a major role modulating organismal response by providing the energetic means to bolster the physiological response of OA stress. On the contrary, the relative expression of chitin synthase, a functional molecule for biomineralization, increased significantly in scallops exposed to low food supply and low pH, which resulted in a thicker periostracum enriched with chitin polysaccharides. Under reduced food and low pH conditions, the adaptive organismal response was to trade-off growth for the expression of biomineralization molecules and altering of the organic composition of shell periostracum, suggesting that the future performance of these calcifiers will depend on the trajectories of both OA and food supply. Thus, incorporating a suite of traits and multiple stressors in future studies of the adaptive organismal response may provide key insights on OA impacts on marine calcifiers.

  20. Insight into the messenger role of reactive oxygen intermediates in immunostimulated hemocytes from the scallop Argopecten purpuratus.

    Science.gov (United States)

    Oyanedel, Daniel; Gonzalez, Roxana; Brokordt, Katherina; Schmitt, Paulina; Mercado, Luis

    2016-12-01

    Reactive oxygen intermediates (ROI) are metabolites produced by aerobic cells which have been linked to oxidative stress. Evidence reported in vertebrates indicates that ROI can also act as messengers in a variety of cellular signaling pathways, including those involved in innate immunity. In a recent study, an inhibitor of NF-kB transcription factors was identified in the scallop Argopecten purpuratus, and its functional characterization suggested that it may regulate the expression of the big defensin antimicrobial peptide ApBD1. In order to give new insights into the messenger role of ROI in the immune response of bivalve mollusks, the effect of ROI production on gene transcription of ApBD1 was assessed in A. purpuratus. The results showed that 48 h-cultured hemocytes were able to display phagocytic activity and ROI production in response to the β-glucan zymosan. The immune stimulation also induced the transcription of ApBD1, which was upregulated in cultured hemocytes. After neutralizing the ROI produced by the stimulated hemocytes with the antioxidant trolox, the transcription of ApBD1 was reduced near to base levels. The results suggest a potential messenger role of intracellular ROI on the regulation of ApBD1 transcription during the immune response of scallops.

  1. Accumulation, Biotransformation, Histopathology and Paralysis in the Pacific Calico Scallop Argopecten ventricosus by the Paralyzing Toxins of the Dinoflagellate Gymnodinium catenatum

    Science.gov (United States)

    Escobedo-Lozano, Amada Y.; Estrada, Norma; Ascencio, Felipe; Contreras, Gerardo; Alonso-Rodriguez, Rosalba

    2012-01-01

    The dinoflagellate Gymnodinium catenatum produces paralyzing shellfish poisons that are consumed and accumulated by bivalves. We performed short-term feeding experiments to examine ingestion, accumulation, biotransformation, histopathology, and paralysis in the juvenile Pacific calico scallop Argopecten ventricosus that consume this dinoflagellate. Depletion of algal cells was measured in closed systems. Histopathological preparations were microscopically analyzed. Paralysis was observed and the time of recovery recorded. Accumulation and possible biotransformation of toxins were measured by HPLC analysis. Feeding activity in treated scallops showed that scallops produced pseudofeces, ingestion rates decreased at 8 h; approximately 60% of the scallops were paralyzed and melanin production and hemocyte aggregation were observed in several tissues at 15 h. HPLC analysis showed that the only toxins present in the dinoflagellates and scallops were the N-sulfo-carbamoyl toxins (C1, C2); after hydrolysis, the carbamate toxins (epimers GTX2/3) were present. C1 and C2 toxins were most common in the mantle, followed by the digestive gland and stomach-complex, adductor muscle, kidney and rectum group, and finally, gills. Toxin profiles in scallop tissue were similar to the dinoflagellate; biotransformations were not present in the scallops in this short-term feeding experiment. PMID:22822356

  2. Accumulation, biotransformation, histopathology and paralysis in the Pacific calico scallop Argopecten ventricosus by the paralyzing toxins of the dinoflagellate Gymnodinium catenatum.

    Science.gov (United States)

    Escobedo-Lozano, Amada Y; Estrada, Norma; Ascencio, Felipe; Contreras, Gerardo; Alonso-Rodriguez, Rosalba

    2012-05-01

    The dinoflagellate Gymnodinium catenatum produces paralyzing shellfish poisons that are consumed and accumulated by bivalves. We performed short-term feeding experiments to examine ingestion, accumulation, biotransformation, histopathology, and paralysis in the juvenile Pacific calico scallop Argopecten ventricosus that consume this dinoflagellate. Depletion of algal cells was measured in closed systems. Histopathological preparations were microscopically analyzed. Paralysis was observed and the time of recovery recorded. Accumulation and possible biotransformation of toxins were measured by HPLC analysis. Feeding activity in treated scallops showed that scallops produced pseudofeces, ingestion rates decreased at 8 h; approximately 60% of the scallops were paralyzed and melanin production and hemocyte aggregation were observed in several tissues at 15 h. HPLC analysis showed that the only toxins present in the dinoflagellates and scallops were the N-sulfo-carbamoyl toxins (C1, C2); after hydrolysis, the carbamate toxins (epimers GTX2/3) were present. C1 and C2 toxins were most common in the mantle, followed by the digestive gland and stomach-complex, adductor muscle, kidney and rectum group, and finally, gills. Toxin profiles in scallop tissue were similar to the dinoflagellate; biotransformations were not present in the scallops in this short-term feeding experiment.

  3. Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic). Bay Scallop

    Energy Technology Data Exchange (ETDEWEB)

    Fay, C.W.; Neves, R.J.; Pardue, G.B.

    1983-10-01

    Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. The bay scallop (Argopecten irradians) is a commercially and ecologically important scallop of estuarine and inshore environments, from Cape Cod, Massachusetts, to Laguna Madre, Texas. They occur at depths from 0.3 to 18 m but are most common in waters less than 2 m deep. They spawn at 1 year of age from April through December, later in southern populations. Water temperature and food supply are important factors for proper gonad developent and spawning. Larvae are planktonic, and juveniles settle and attach by byssal threads to suitable substrates; seagrass beds are preferred for settlement. Bay scallops are filter feeders, consuming primarily benthic diatoms. Temperature, salinity, water currents, and availability of suitable attachment/settlement substrates are the most important environmental requirements of bay scallops. They require a minimum water temperature of 20/sup 0/C for spawning, and a minimum of 14 ppt salinity, grow best in currents less than 1 cm/s, and prefer eelgrass to other seagrasses for settlement and attachment during early life stages. 52 references, 2 figures.

  4. A novel C1qDC protein acting as pattern recognition receptor in scallop Argopecten irradians.

    Science.gov (United States)

    Wang, Leilei; Wang, Lingling; Kong, Pengfei; Yang, Jialong; Zhang, Huan; Wang, Mengqiang; Zhou, Zhi; Qiu, Limei; Song, Linsheng

    2012-08-01

    The C1q domain containing (C1qDC) proteins refer to a family of proteins containing the versatile charge pattern recognition globular C1q domain in the C-terminus, which could bind various ligands including PAMPs and trigger a serial of immune response. In this study, a novel C1qDC protein was identified from Argopecten irradians (designated as AiC1qDC-2). Its full-length cDNA was of 1062 bp with an open reading frame of 720 bp encoding a polypeptide of 240 amino acids containing a typical gC1q domain. This gC1q domain possessed the typical 10-stranded β-sandwich fold with a jelly-roll topology common to all C1q family members, and shared high homology with most of the other identified gC1q domains. The mRNA transcripts of AiC1qDC-2 were mainly detected in hepatopancreas, and also marginally detectable in mantle, gonad, adductor, gill and hemocytes. Its relative expression level in hemocytes was significantly up-regulated after challenges of fungi Pichia pastoris GS115 (P pattern recognition receptor to recognize various PAMPs on different pathogens in the innate immune responses of scallop, and provided new clues to understand the role of invertebrate C1qDC proteins in the ancient complement system.

  5. A scallop C-type lectin from Argopecten irradians (AiCTL5) with activities of lipopolysaccharide binding and Gram-negative bacteria agglutination.

    Science.gov (United States)

    Mu, Changkao; Song, Xiaoyan; Zhao, Jianmin; Wang, Lingling; Qiu, Limei; Zhang, Huan; Zhou, Zhi; Wang, Mengqiang; Song, Linsheng; Wang, Chunlin

    2012-05-01

    C-type lectins are a family of calcium-dependent carbohydrate-binding proteins. In the present study, a C-type lectin (designated as AiCTL5) was identified and characterized from Argopecten irradians. The full-length cDNA of AiCTL5 was of 673 bp, containing a 5' untranslated region (UTR) of 24 bp, a 3' UTR of 130 bp with a poly (A) tail, and an open reading frame (ORF) of 519 bp encoding a polypeptide of 172 amino acids with a putative signal peptide of 17 amino acids. A C-type lectin-like domain (CRD) containing 6 conserved cysteines and a putative glycosylation sites were identified in the deduced amino acid sequence of AiCTL5. AiCTL5 shared 11%-27.5% identity with the previous reported C-type lectin from A. irradians. The cDNA fragment encoding the mature peptide of AiCTL5 was recombined into pET-21a (+) with a C-terminal hexa-histidine tag fused in-frame, and expressed in Escherichia coli Origami (DE3). The recombinant AiCTL5 (rAiCTL5) agglutinated Gram-negative E. coli TOP10F' and Listonella anguillarum, but did not agglutinate Gram-positive bacteria Bacillus thuringiensis and Micrococcus luteus, and the agglutination could be inhibited by EDTA, indicating that AiCTL5 was a Ca(2+)-dependent lectin. rAiCTL5 exhibited a significantly strong activity to bind LPS from E. coli, which conformed to the agglutinating activity toward Gram-negative bacteria. Moreover, rAiCTL5 also agglutinated rabbit erythrocytes. These results indicated that AiCTL5 could function as a pattern recognition receptor to protect bay scallop from Gram-negative bacterial infection, and also provide evidence to understand the structural and functional diverse of lectin.

  6. Anatomical mercury speciation in bay scallops by thio-bearing chelating resin concentration and GC-electron capture detector determination.

    Science.gov (United States)

    Zhang, Qihua; Yang, Guipeng

    2014-01-01

    The highly toxic methyl-, ethyl- and phenylmercury species that may exist in the three main anatomical parts - the adductor muscle, the mantle and the visceral mass - of bay scallops (Argopecten irradias) were quantitatively released by cupric chloride, zinc acetate, sodium chloride and hydrochloric acid (HCl) under ultrasonic extraction. After centrifugation, the mercury species in the supernatant were concentrated by thio (SH)-bearing chelating resins, eluted with HClO4 and HCl and extracted with toluene. Separation was achieved by capillary GC equipped with programmed temperatures, a constant nitrogen flow and detected by a micro-electron capture detector (μECD). Under optimised conditions, the LODs for methyl-, ethyl- and phenylmercury in bay scallop samples were 1.1, 0.65 and 0.80 ng g(-1), respectively. The maximum RSD for three replicate determinations of methyl-, ethyl- and phenylmercury in bay scallop samples were 13.7%, 14.0% and 11.2%, respectively. In the concentration range of 4-200 ng g(-1) in bay scallop samples, the calibration graphs were linear with correlation coefficients not less than 0.997. Recoveries for spiked samples were in the range of 92.7-103.5% (methylmercury), 87.5-108.3% (ethylmercury) and 91.6-106.0% (phenylmercury), respectively. The method was verified by the determination of methylmercury in a CRM GBW10029 (Total Mercury and Methyl Mercury in Fish Tissue), with results in good agreement with the certified values. Methylmercury - the only existing species in bay scallops - was successfully determined by the method.

  7. Morphological alterations in cryopreserved spermatozoa of scallop Argopecten purpuratus Alteraciones morfológicas en espermatozoides criopreservados de concha de abanico Argopecten purpuratus

    Directory of Open Access Journals (Sweden)

    Carlos Espinoza

    2010-01-01

    Full Text Available The present work identifies and quantifies the morphological alterations of scallop Argopecten purpuratus spermatozoa caused by long-term cryopreservation. Percentages of motility, fertilization and injured spermatozoa were quantified by optic microscopy and scanned electron microscopy. These parameters were evaluated in sperm without treatment (CTR, spermatozoa incubated in cryoprotective solution but not freezed (ICS and freezed-thawed spermatozoa (FTS. Spermatozoa of ICS treatment remained motile longer than those of CTR, whereas those of FTS treatment were lowest. Morphology of the spermatozoa was affected in several ways by the freeze-thawing treatment; some had their head deformed or swollen, others had their cell membrane folded or broken; acrosome reaction; anomalous positions or absence of mitochondria as well as broken, stiff or loss of lineal structure of tail. CTR and ICS treatments had higher percentages of undamaged sperm (87.7% and 79.0% respectively, while FTS samples had 14.2% of undamaged sperm. The tail was the spermatic structure most commonly injured in FTS (77.0%, the percentage of sperm with head injury was 55.1% and with acrosome reaction was 28.7%, whereas middle piece was affected in 23.9% of sperm. Percentages of fertilization were 68.3%, 67.9% and 58.2% for CTR, ICS and FTS respectively, which were not significantly different. There was a higher correlation between injuries and motility than between injuries and fertilization success. Correlation between motility and fertilization was low (0.605 and 0.668 with motility at 5 and 30 min, respectively.El presente trabajo identifica y cuantifica las alteraciones morfológicas en espermatozoides de concha de abanico A. purpuratus causadas por la criopreservación en nitrógeno líquido. Porcentajes de motilidad, fecundación de ovocitos frescos y espermatozoides lesionados (en cabeza, acrosoma, pieza media y flagelo fueron determinados bajo microscopía óptica y electr

  8. Effect of temperature on physiological responses of Peruvian scallop Argopecten purpuratus

    Directory of Open Access Journals (Sweden)

    Jhon Dionicio Acedo

    2015-12-01

    Full Text Available The effect of temperature on the clearance rate (CR, ingestion rate (IR and specific oxygen consumption (SOC in individuals of Argopecten purpuratus at different size groups were determined. The CR and IR tests were performed at a concentration of approximately 1x106 cel.mlL-1 of Chaetoceros calcitrans, two temperatures 17 and 22 °C were evaluated and different groups of average size were formed of 7.6 ± 0.265, and 0.058 ± 4.9 3.7 ± 0.173 cm. In SOC test the average size groups were 8.1 ± 0.351, 0.058 ± 5.6 and 4.3 ± 0.100 cm. The results show a significant effect of temperature in CR (Lh-1 and IR (cel.h-1 x 105 on the larger individuals (7.6 ± 0.265 cm, it was observed at 22 °C an average increase, about 17 °C, up to 250% to CR and 48% to IR. In addition, a direct relationship of body size with CR and IR in both temperatures was observed. The effect of temperature at 22 ° C on SOC in all groups was evaluated, with an increase of 239.8, 165.3 and 183.4% for size individuals of 8.1 ± 0.351, 0.058 ± 5.6 and 4.3 ± 0.100 respectively. Furthermore, in both evaluated temperatures, the results show an indirect relationship of body size with the SOC.

  9. First Report of Vibrio tubiashii Associated with a Massive Larval Mortality Event in a Commercial Hatchery of Scallop Argopecten purpuratus in Chile

    Science.gov (United States)

    Rojas, Rodrigo; Miranda, Claudio D.; Santander, Javier; Romero, Jaime

    2016-01-01

    The VPAP30 strain was isolated as the highly predominant bacteria from an episode of massive larval mortality occurring in a commercial culture of the Chilean scallop Argopecten purpuratus. The main aims of this study were, to characterize and identify the pathogenic strain using biochemical and molecular methods to demonstrate its pathogenic activity on scallop larvae, to characterize its pathogenic properties and to describe the chronology of this pathology. The pathogenic strain was identified as Vibrio tubiashii based on its phenotypic properties and the sequence analysis of its 16S rRNA and housekeeping genes (ftsZ, gapA, gyrB, mreB, pyrH, recA, rpoA and topA). When triplicate cultures of healthy 10–day–old scallop larvae were challenged with 1 × 105 colony forming units (CFU) mL-1 of the VPAP30 strain, percentages of larval survival of 78.87 ± 3.33%, 34.32 ± 4.94%, and 0% were observed at 12, 24, and 36 h, respectively; whereas uninfected larval cultures showed survival rates of 97.4 ± 1.24% after of 48 h. Clinical symptoms exhibited by the scallop larvae infected with the VPAP30 strain include the accumulation of bacteria around the scallop larvae, velum disruption and necrosis of digestive gland. The 50% lethal dose (LD50) of VPAP30 strain at 24 and 48 h was 1.3 × 104 and 1.2 × 103 CFU mL-1, respectively. The invasive pathogenic activity of the VPAP30 strain was investigated with staining of the bacterial pathogen with 5-DTAF and analyzing bacterial invasion using epifluorescence, and a complete bacterial dissemination inside the larvae at 24 h post-infection was observed. When scallop larvae were inoculated with cell-free extracellular products (ECPs) of VPAP30, the larval survival rate was 59.5 ± 1.66%, significantly (P < 0.001) lower than the control group (97.4 ± 1.20%) whereas larvae treated with heat-treated ECPs exhibited a survival rate of 61.6 ± 1.84% after 48 h of exposure. This is the first report of the isolation of V. tubiashii

  10. First report of Vibrio tubiashii associated with a massive larval mortality event in a commercial hatchery of scallop Argopecten purpuratus in Chile

    Directory of Open Access Journals (Sweden)

    Rodrigo Alejandro Rojas

    2016-09-01

    Full Text Available The VPAP30 strain was isolated as the highly predominant bacteria from an episode of massive larval mortality occurring in a commercial culture of the Chilean scallop Argopecten purpuratus. The main aims of this study were, to characterize and identify the pathogenic strain using biochemical and molecular methods to demonstrate its pathogenic activity on scallop larvae, to characterize its pathogenic properties and to describe the chronology of this pathology. The pathogenic strain was identified as Vibrio tubiashii based on its phenotypic properties and the sequence analysis of its 16S rRNA and housekeeping genes (ftsZ, gapA, gyrB, mreB, pyrH, recA, rpoA and topA. When triplicate cultures of healthy 10–day–old scallop larvae were challenged with 1×105 colony forming units (CFU mL-1 of the VPAP30 strain, percentages of larval survival of 78.87 ± 3.33%, 34.32 ± 4.94% and 0% were observed at 12, 24 and 36 h, respectively; whereas uninfected larval cultures showed survival rates of 97.4 ± 1.24% after of 48 h. Clinical symptoms exhibited by the scallop larvae infected with the VPAP30 strain include the accumulation of bacteria around the scallop larvae, velum disruption and necrosis of digestive gland. The 50% lethal dose (LD50 of VPAP30 strain at 24 and 48 h was 1.3×104 and 1.2×103 CFU mL-1, respectively. The invasive pathogenic activity of the VPAP30 strain was investigated with staining of the bacterial pathogen with 5-DTAF and analysing bacterial invasion using epifluorescence, and a complete bacterial dissemination inside the larvae at 24 h post-infection was observed. When scallop larvae were inoculated with cell-free extracellular products (ECPs of VPAP30, the larval survival rate was 59.5 ± 1.66%, significantly (P<0.001 lower than the control group (97.4 ± 1.20% whereas larvae treated with heat-treated ECPs exhibited a survival rate of 61.6 ± 1.84% after 48 h of exposure. This is the first report of the isolation of V. tubiashii

  11. Inter-specific hybridization between Argopecten purpuratus and Argopecten irradians irradians%紫扇贝与海湾扇贝种间杂交的研究

    Institute of Scientific and Technical Information of China (English)

    王春德; 刘保忠; 李继强; 刘升平

    2009-01-01

    The purple scallop(Argopecten purpuratus)and the bay scallop(Argopecten irradians irradi-ans)are all fast-growing Argopecten scallops. The bay scallop has been introduced into China 1980 s and has now developed into a large industry in China. Now the authors reported the introduction of purple scal-lops from Peru into China and the inter-specific hybridization between the bay scallopnms and purple scal-lops. In this study, the hybrids were produced by hybridizing A. Purpuratus eggs with A. Irradians irra-dians sperm. The results showed that the A. Purpuratus eggs can be fertilized with A. Irradians irradians sperm, and the resulted embryos can develop normally. Faster growth was observed in the hybrids com-pared with the pure-bred bay scallops during both the larval and adult stages. The average shell height, shell length, shell width and whole weight of the hybrids are 27.3%, 25.2%, 19.3%, and 107.0% larger than that of the pure-bred bay scallops, indicating a significant heterosis in the hybrids.%为推动中国扇贝养殖业的进一步发展,作者于2008年从秘鲁引进了紫扇贝(Argopecten purpuratus),尝试将紫扇贝与海湾扇贝(Argopecten purpuratus)进行杂交,以期培育出具有优势性状的杂交子代.利用引进的紫扇贝与海湾扇贝进行种间杂交,培育出紫扇贝(雌)×海湾扇贝(雄)杂交扇贝.实验证明紫扇贝的卵子与海湾扇贝的精子可正常受精,受精卵发育正常.杂交扇贝的生长速度在幼虫阶段和成体阶段均快于海湾扇贝.至收获时,杂交贝比海湾扇贝平均壳高、壳长和壳宽分别大27.3%,25.2%和19.3%,体质量增加107.0%,杂种优势明显.

  12. Molecular characterization of two ferritins of the scallop Argopecten purpuratus and gene expressions in association with early development, immune response and growth rate.

    Science.gov (United States)

    Coba de la Peña, Teodoro; Cárcamo, Claudia B; Díaz, María I; Brokordt, Katherina B; Winkler, Federico M

    2016-08-01

    Ferritin is involved in several iron homoeostasis processes in molluscs. We characterized two ferritin homologues and their expression patterns in association with early development, growth rate and immune response in the scallop Argopecten purpuratus, a species of economic importance for Chile and Peru. Two ferritin subunits (Apfer1 and Apfer2) were cloned. Apfer1 cDNA is a 792bp clone containing a 516bp open reading frame (ORF) that corresponds to a novel ferritin subunit in A. purpuratus. Apfer2 cDNA is a 681bp clone containing a 522bp ORF that corresponds to a previously sequenced EST. A putative iron responsive element (IRE) was identified in the 5'-untranslated region of both genes. The deduced protein sequences of both cDNAs possessed the motifs and domains characteristic of functional ferritin subunits. Both genes showed differential expression patterns at tissue-specific and early development stage levels. Apfer1 expression level increased 40-fold along larval developmental stages, decreasing markedly after larval settlement. Apfer1 expression in mantle tissue was 2.8-fold higher in fast-growing than in slow-growing scallops. Apfer1 increased 8-fold in haemocytes 24h post-challenge with the bacterium Vibrio splendidus. Apfer2 expression did not differ between fast- and slow-growing scallops or in response to bacterial challenge. These results suggest that Apfer1 and Apfer2 may be involved in iron storage, larval development and shell formation. Apfer1 expression may additionally be involved in immune response against bacterial infections and also in growth; and thus would be a potential marker for immune capacity and for fast growth in A. purpuratus.

  13. Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification, supplement to: Ramajo, L; Marba, Núria; Prado, Luis; Peron, Sophie; Lardies, Marco A; Rodriguez-Navarro, Alejandro; Vargas, C A; Lagos, Nelson A; Duarte, Carlos M (2016): Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification. Global Change Biology, 22(6), 2025-2037

    KAUST Repository

    Ramajo, L

    2016-01-01

    Future ocean acidification (OA) will affect physiological traits of marine species, with calcifying species being particularly vulnerable. As OA entails high energy demands, particularly during the rapid juvenile growth phase, food supply may play a key role in the response of marine organisms to OA. We experimentally evaluated the role of food supply in modulating physiological responses and biomineralization processes in juveniles of the Chilean scallop, Argopecten purpuratus, that were exposed to control (pH 8.0) and low pH (pH 7.6) conditions using three food supply treatments (high, intermediate, and low). We found that pH and food levels had additive effects on the physiological response of the juvenile scallops. Metabolic rates, shell growth, net calcification, and ingestion rates increased significantly at low pH conditions, independent of food. These physiological responses increased significantly in organisms exposed to intermediate and high levels of food supply. Hence, food supply seems to play a major role modulating organismal response by providing the energetic means to bolster the physiological response of OA stress. On the contrary, the relative expression of chitin synthase, a functional molecule for biomineralization, increased significantly in scallops exposed to low food supply and low pH, which resulted in a thicker periostracum enriched with chitin polysaccharides. Under reduced food and low pH conditions, the adaptive organismal response was to trade-off growth for the expression of biomineralization molecules and altering of the organic composition of shell periostracum, suggesting that the future performance of these calcifiers will depend on the trajectories of both OA and food supply. Thus, incorporating a suite of traits and multiple stressors in future studies of the adaptive organismal response may provide key insights on OA impacts on marine calcifiers.

  14. Effects of Elevated Seawater pCO2 on Early Development of ScallopArgopecten irradias(Lamarck, 1819)

    Institute of Scientific and Technical Information of China (English)

    WANG Weimin; LIU Guangxing; ZHANG Tianwen; CHEN Hongju; TANG Liao; MAO Xuewei

    2016-01-01

    To investigate the effects of elevated seawater pCO2 on the early developmental stages of marine benthic calcifying or-ganisms, we exposed the eggs and larvae ofArgopecten irradias, an important bivalve species in Chinese aquaculture, in seawater equilibrated with CO2-enriched (1000ppm) gas mixtures. We demonstrated that elevated seawater pCO2 significantly interfered with fertilization and larval development and resulted in an increased aberration rate. Fertilization in the treatment (pH 7.6) was 74.3%± 3.8%, which was 9.7% lower than that in the control (pH 8.3) (84.0%±3.0%). Hatching success decreased by 23.7%, and aberration rate increased by 30.3% under acidic condition. Larvae in acidified seawater still developed a shell during the post-embryonic phase. However, the shell length and height in the treatment were smaller than those in the control. The development of embryos differed significantly at 12h after fertilization between the two experimental groups. Embryos developed slower in acidified seawater. Nearly half of the embryos in the control developed into D-shaped larvae at 48h after fertilization, which were considerably more than those in the treatment (11.7%). Results suggest that future ocean acidification (OA) would cause detrimental effects on the early develop-ment ofA. irradias.

  15. Boom-to-bust. The scallop (Argopecten purpuratus fishery in the Pisco-Paracas region, southern Peruvian coast Auge y crisis: la pesquería de la concha de abanico (Argopecten purpuratus en la región Pisco-Paracas, costa sur del Perú

    Directory of Open Access Journals (Sweden)

    Ricardo M. González Hunt

    2010-12-01

    Full Text Available This paper examines scallop (Argopecten purpuratus booms experienced in the Pisco-Paracas Region of southern Peru, triggered by the 1982-1983 and the 1997-1998 mega-El Niño Southern Oscillation (ENSO events.The quiet fishing ports have been transformed by these booms, which have attracted outside stakeholders transforming the local society. Government institutions in their role as resource managers and environmental stewards have attempted to control access to a region that until recently contained the only marine protected area of Peru.This situation has led to rapid growth in the scallop industry, the overexploitation and depletion of the shellfish, creating a sustainability crisis. Furthermore, this paper examines contradictions and relationships across local, regional, national, and international scales.Este trabajo examina los ciclos de expansión (boom de la explotación de la concha de abanico (Argopecten purpuratus observados en la región Pisco-Paracas del sur del Perú, resultantes de los fenómenos El Niño de 1982-1983 y 1997-1998.Los apacibles puertos de pesca han sido transformados por estos booms productivos que han atraído actores externos y han generado un impacto en la sociedad local. Las instituciones gubernamentales, en su papel de administradores de recursos y protectores del medio ambiente, han tratado de controlar el acceso a una región que hasta hace poco contenía la única área marina protegida del Perú.Esta situación ha producido un rápido crecimiento de la industria de la concha de abanico, su sobreexplotación y el agotamiento de dicho recurso, y ha producido una crisis de sostenibilidad. Asimismo, este trabajo examina las contradicciones y las relaciones entre las escalas local, regional, nacional e internacional.

  16. Molecular identification of scallop planktonic larvae using species-specific microsatellites

    Institute of Scientific and Technical Information of China (English)

    ZHAN Aibin; HU Xiaoli; BAO Lisui; LU Wei; PENG Wei; WANG Mingling; HU Jingjie

    2008-01-01

    The identification of scallop larvae is essential to understand the population structure and community dynamics and to assess the potential environmental impacts caused by scallop larvae released or escaped. However, the larvae identification by morphological characteristics is notoriously difficult, mainly due to the small size (usually being less than 150 μm) and vague morphological characteristics among different scallop species. A simple and accurate molecular method was developed to identify four economically farmed scallop species, the Zhikong scallop Chlamys farreri, the noble scallop C. nobilis, the bay scallop Argopecten irradians and the Yesso scallop Mizuhopecten yessoensis. The tests used the high degree of species-specific micresatellite markers, which was specified by transferability analyses, assessed by reference individuals and evaluated by BLAST searches. The sensitivity test indicated that the species-specific micresatellites were sensitive enough for the detection of 1%~2% larvae in mixed plankton samples, larvae collected from scallop hatcheries and their effluents and from the artificially controlled crosses were well identified to the species/hybrid level. The results demonstrated that the one-step PCR-based assay was technically simple, inexpensive and robust in identification analyses, and also less sensitive to initial quality of template DNA extracted from the ethanol-preserved samples for several years.

  17. Asociación entre la tasa de autofecundación y la frecuencia de larvas malformadas en poblaciones cultivadas del ostión del norte Argopecten purpuratus (Lamarck, 1819 Association between self-fertilization rates and the frequency of malformed larvae in farmed populations of the northern scallop Argopecten purpuratus (Lamarck, 1819

    Directory of Open Access Journals (Sweden)

    Christopher Concha

    2011-07-01

    Full Text Available El incremento de la frecuencia de malformaciones y la reducción de la viabilidad y fecundidad suelen ser las primeras manifestaciones de la depresión por consanguinidad en animales. El ostión del norte, Argopectenpurpuratus (Lamarck, 1819, es una especie hermnafrodita funcional con autofecundación parcial y durante la reproducción artificial puede presentar altos grados de autofecundación. En este trabajo se analizó la asociación de la tasa de autofecundación con la frecuencia de larvas malformadas y la supervivencia larval. Se desovaron adultos maduros y se recogieron separadamente los gametos femeninos del 5° pulso de liberación en adelante y los masculinos. Los ovocitos fueron fecundados con espermatozoides de otro individuo, formando familias de hermanos completos. La tasa de autofecundación se verificó por la proporción de ovocitos que entra en división en una muestra de ellos sin fecundar. La tasa de autofecundación varió entre familias de 0 a 100%, con distribución de frecuencias normal. La proporción de larvas malformadas se distribuyó al azar entre las familias analizadas, pero se correlacionó negativamente, en forma moderada pero significativa, con la tasa de autofecundación y la temperatura media del cultivo. Los datos sugieren que la autofecundación en las familias de ostiones puede favorecer una mayor homeostasis del desarrollo larval.Increased frequencies of malformations and the reduction of viability and fecundity are some of the first manifestations of inbreeding depression in animals. The northern scallop, Argopecten purpuratus (Lamarck, 1819, is a functional hermaphrodite species with partial self-fertilization. During artificial reproduction, this species may present high degrees of self-fertilization. In this work, the association between the selfing rate and the frequency of larval malformations and survival were analyzed. Mature adults were spawned, and female and male gametes were collected

  18. Simulation model of the scallop (Argopecten purpuratus farming in northern Chile: some applications in the decision making process Modelo de simulación para el cultivo del ostión (Argopecten purpuratus en el norte de Chile: aplicaciones para la toma de decisiones

    Directory of Open Access Journals (Sweden)

    Renato Molina

    2012-09-01

    Full Text Available Aquaculture farming is a complex system integrating several disciplines, including biology, engineering and economics, all which need to be correctly intertwined to have a profitable and environmentally sustainable activity. During the past recent years, scallop (Argopectenpurpuratus farmers in northern Chile have come to comprehend the hard way that aquaculture producers operate in a complex and dynamic environment where natural and economic factors are in constant change. Thus, to keep a profitable and competitive business in today's world, aquaculture farm managers are in need of relatively easy to use tools for efficient and timely decision making. Harvest size and time, mortality and growth rates, stocking rates, costs and market prices are important variables and parameters to monitor, where decisions with respect to their levels or values have to be made. In this context, non-linear and dynamic quantitative bioeconomic models should become valuable tools, for periodic decision making in the aquaculture business. This paper shows how to emulate Chilean scallop farming using a simulation model that mimics some of the industry's features. The model presented here focuses on a scallop aquaculture center that uses the common technology approach of pearl net and lanterns of the northern region of Chile, and analyses the farming strategies based on harvesting size. Also, these strategies were subject to variations in the parameters in order to identify patterns and asses the sensibility of the model to input values.La acuicultura es un sistema complejo que integra varias disciplinas, incluyendo la biología, ingeniería y economía, las cuales deben ser correctamente entrelazadas para lograr una actividad rentable y ambientalmente sostenible. Durante los últimos anos, los cultivadores del ostión del norte (Argopecten purpuratus en Chile han comprendido de la peor manera, que las actividades de acuicultura operan en un entorno complejo y din

  19. Growth and Development of Larval Bay Scallops (Argopecten irradians) in Response to Early Exposure to High CO2

    Science.gov (United States)

    2013-02-01

    Georgia .  Limnol     Oceanogr  43:  657–668.   Cai,  W.-­‐J.,  X.  Hu,  W.-­‐J.  Huang...cups  were  contained  in  a  water  bath  controlled  by  an   aquarium   chiller/heater  (T  =  22.5  ±  0.3  °C...Altamaha  Rivers,   Georgia .  Limnol     Oceanogr  43:  657–668.   Cai,  W.-­‐J.,  X.  Hu,  W.-­‐J.  Huang,

  20. Balancing the edge effects budget: bay scallop settlement and loss along a seagrass edge.

    Science.gov (United States)

    Carroll, John M; Furman, Bradley T; Tettelbach, Stephen T; Peterson, Bradley J

    2012-07-01

    Edge effects are a dominant subject in landscape ecology literature, yet they are highly variable and poorly understood. Often, the literature suggests simple models for edge effects-positive (enhancement at the edge), negative (enhancement at the interior), or no effect (neutral)--on a variety of metrics, including abundance, diversity, and mortality. In the marine realm, much of this work has focused on fragmented seagrass habitats due to their importance for a variety of commercially important species. In this study, the settlement, recruitment, and survival of bay scallops was investigated across a variety of seagrass patch treatments. By simultaneously collecting settlers (those viable larvae available to settle and metamorphose) and recruits (those settlers that survive some period of time, in this case, 6 weeks) on the same collectors, we were able to demonstrate a "balance" between positive and negative edge effects, resulting in a net neutral effect. Scallop settlement was significantly enhanced along seagrass edges, regardless of patch type while survival was elevated within patch interiors. However, recruitment (the net result of settlement and post-settlement loss) did not vary significantly from edge to center, representing a neutral effect. Further, results suggest that post-settlement loss, most likely due to predation, appears to be the dominant mechanism structuring scallop abundance, not patterns in settlement. These data illustrate the complexity of edge effects, and suggest that the metric used to investigate the effect (be it abundance, survival, or other metrics) can often influence the magnitude and direction of the perceived effect. Traditionally, high predation along a habitat edge would have indicated an "ecological trap" for the species in question; however, this study demonstrates that, at the population level, an ecological trap may not exist.

  1. Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). BAY SCALLOP,

    Science.gov (United States)

    1983-10-01

    wel, funneling and A. i. concentricus) (Broom 1976). energy from planktonic and benthic Normal adult size ranges from 55 to 90 organisms to aquatic and...lasted seaweeds (Ingersoll 1886), oyster about 10 days; by this time the foot shells, rope, and filamentous algae was fully developed (pediveliger...indicated that the primary (Chipman and Hopkins 1954). food of bay scallops was benthic diatoms. Characteristically, planktonic Normal feeding position of

  2. Cytogenetic analysis in two scallops (Bivalvia: Pectinidae) by PRINS and PI banding

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Cytogenetic analysis was performed for the bay scallop (Argopecten irradians Lamarck 1819) and the Japanese scallop (Patinopecten yessoensis Jay 1857) by primed in situ labeling (PRINS) and propidium iodide (PI) banding techniques. The PRINS analysis revealed that major rRNA genes were clustered in two loci on the telomeric regions of the short arms on two acrocentric chromosome pairs in A. irradians and on two submetacentric pairs in P. yessoensis. The histone H3 gene sites differed in number and location between these two species. The C-band-like patterns revealed by PI staining varied considerably between these two species. A. irradians displayed terminal bands at long arms on all chromosomes, centromeric bands on some pairs and interstitial bands on five pairs. P. yessoensis exhibited only centromeric bands on all chromosomes. These results would contribute to the better understanding of karyotype evolution in A. irradians and P. yessoensis.

  3. Effect of Fouling Organisms on Food Uptake and Nutrient Release of Scallop (Chlamys nobilis, Reeve) Cultured in Daya Bay

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Biofouling is an important factor that affects the bivalve farming industry. Fouling organisms may reduce growth and survival rate of the cultured species. Fouler are often filter feeders, so they are potential competitors for food resource with the cultured species. The present study was conducted to measure the impact of fouling on food uptake and nutrient release in April and June, 2006 in Daya Bay near Guangzhou, China. Results showed that fouling organisms had significant effect on food uptake and nutrient release. The chlorophyll a uptake rate of fouled scallops was 7.53Lh-1±1.416Lh-1 and 11.94Lh-1±2.497Lh-1 in April and June, respectively, significantly higher than those of cleaned scallops, i.e., 4.23 Lh-1 ±2.744Lh-1 and 2.57Lh-1± 1.832 Lh-1 respectively.The consumption of total particulate matter by fouled scallops in April and June was 5.52Lh-1±0.818Lh-1 and 3.07Lh-1±0.971 Lh-1,respectively; the corresponding results for cleaned scallops are 2.49Lh-1 ±0.614Lh-1 and 2.37± 1.214Lh-1, respectively. Fouling increased ammonia release significantly. The ammonia release rate of fouled scallops was 33.81Lh-1±7.699Lh-1 and 76.39Lh-1 ±9.251Lh-1 in April and June, while cleaned scallops released 2.46Lh-1± 0.5 1 1Lh-1 and 7.23Lh-1± 1.026Lh-1 ammonia, respectively. Phosphate release of fouled scallops was 22.72Lh-1 ± 9.978 Lh-1 in June and cleaned scallops released phosphate 6.01Lh-1 ±0.876 Lh-1 in April. Therefore, fouling contributed much to food reduction and concentration increase of ammonia and phosphate in water.

  4. Spectral sensitivity of the concave mirror eyes of scallops: potential influences of habitat, self-screening and longitudinal chromatic aberration.

    Science.gov (United States)

    Speiser, Daniel I; Loew, Ellis R; Johnsen, Sönke

    2011-02-01

    Scallop eyes contain two retinas, one proximal and one distal. Molecular evidence suggests that each retina expresses a different visual pigment. To test whether these retinas have different spectral sensitivities, we used microspectrophotometry to measure the absorption spectra of photoreceptors from the eyes of two different scallop species. Photoreceptors from the proximal and distal retinas of the sea scallop Placopecten magellanicus had absorption peak wavelengths (λ(max)) of 488 ± 1 nm (mean ± s.e.m.; N=20) and 513 ± 3 nm (N=26), respectively. Photoreceptors from the corresponding retinas of the bay scallop Argopecten irradians had λ(max) values of 506 ± 1 nm (N=21) and 535 ± 3 nm (N=14). Assuming that the proximal and distal receptors had equal absorption coefficients (k(D)=0.0067 microm(-1)), we found that self-screening within the scallop eye caused the proximal and distal receptors in P. magellanicus to have peak absorption at 490 and 520 nm, respectively, and the corresponding receptors in A. irradians to have peak absorption at 504 and 549 nm. We conclude that environment may influence the λ(max) of scallop visual pigments: P. magellanicus, generally found in blue oceanic water, has visual pigments that are maximally sensitive to shorter wavelengths than those found in A. irradians, which lives in greener inshore water. Scallop distal retinas may be sensitive to longer wavelengths of light than scallop proximal retinas to correct for either self-screening by the retinas or longitudinal chromatic aberration of the lens.

  5. De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae.

    Directory of Open Access Journals (Sweden)

    Autum N Pairett

    Full Text Available BACKGROUND: The eye has evolved across 13 separate lineages of molluscs. Yet, there have been very few studies examining the molecular machinary underlying eye function of this group, which is due, in part, to a lack of genomic resources. The scallop (Bivalvia: Pectinidae represents a compeling molluscan model to study photoreception due to its morphologically novel and separately evolved mirror-type eye. We sequenced the adult eye transcriptome of two scallop species to: 1 identify the phototransduction pathway components; 2 identify any additional light detection functions; and 3 test the hypothesis that molluscs possess genes not found in other animal lineages. RESULTS: A total of 3,039 contigs from the bay scallop, Argopecten irradians and 26,395 contigs from the sea scallop, Placopecten magellanicus were produced by 454 sequencing. Targeted BLAST searches and functional annotation using Gene Ontology (GO terms and KEGG pathways identified transcripts from three light detection systems: two phototransduction pathways and the circadian clock, a previously unrecognized function of the scallop eye. By comparing the scallop transcriptomes to molluscan and non-molluscan genomes, we discovered that a large proportion of the transcripts (7,776 sequences may be specific to the scallop lineage. Nearly one-third of these contain transmembrane protein domains, suggesting these unannotated transcripts may be sensory receptors. CONCLUSIONS: Our data provide the most comprehensive transcriptomic resource currently available from a single molluscan eye type. Candidate genes potentially involved in sensory reception were identified, and are worthy of further investigation. This resource, combined with recent phylogenetic and genomic data, provides a strong foundation for future investigations of the function and evolution of molluscan photosensory systems in this morphologically and taxonomically diverse phylum.

  6. A new fibrinogen-related protein from Argopecten irradians (AiFREP-2) with broad recognition spectrum and bacteria agglutination activity.

    Science.gov (United States)

    Yang, Chuanyan; Wang, Leilei; Zhang, Huan; Wang, Lingling; Huang, Mengmeng; Sun, Zhibin; Sun, Ying; Song, Linsheng

    2014-05-01

    Fibrinogen-related proteins (FREPs) are a kind of pattern recognition receptors (PRRs) containing fibrinogen-like (FBG) domains, and they play curial roles in the innate immune response. In the present study, a new FREP protein was identified from bay scallop Argopecten irradians (designated as AiFREP-2). The full-length cDNA of AiFREP-2 was of 1299 bp with an open reading frame of 762 bp encoding a polypeptide of 253 amino acids, including a signal sequence and an FBG domain. The FBG domain in AiFREP-2 was highly similar to those of ficolins, tenascins and other FREPs. The mRNA expression of AiFREP-2 could be detected in all the examined tissues with the highest level in gill. The mRNA expression of AiFREP-2 in hemocytes was significantly up-regulated post the stimulation of lipopolysaccharide (LPS), peptidoglycan (PGN) and β-glucan (GLU) (P agglutination activity towards Gram-negative bacteria V. anguillarum and Gram positive bacteria S. aureus. The results indicated that AiFREP-2 was involved in the immune response against Gram-negative bacteria, Gram-positive bacteria and fungus as a PRR in bay scallop, and the information was helpful to understand the innate immune defense mechanisms of mollusks.

  7. THE USE OF REMOTE SENSING, REGRESSION QUANTILES, AND GIS APPROACHES FOR MODELING OF SCALLOP LARVAE: A Case Study in Funka Bay, Hokkaido, Japan

    Directory of Open Access Journals (Sweden)

    I Nyoman Radiarta

    2011-12-01

    Full Text Available In the development of scallop cultivation in Japan, larvae collection and propagation become an important factor. Although the monitoring program has been conducted, modeling of species distribution is becoming an important tool for understanding the effects of environmental changes and resources management. This study was conducted to construct a model for providing estimation of the scallop larvae distribution in Funka Bay, Hokkaido, Japan using the integration of remote sensing, Regression Quantile (RQ and Geographic Information System (GIS-based model. Data on scallop larvae were collected during one year spawning season from April to July 2003. Environmental parameters were extracted from multi sensor remotely sensed data (chlorophyll-a and sea surface temperature and a hydrographic chart (water depth. These parameters together with larvae data were then analyzed using RQ. Finally, spatial models were constructed within a GIS by combining the RQ models with digital map of environmental parameters. The results show that the model was best explained by using only sea surface temperature. The highest larvae densities were predicted in a relatively broad distribution along with the shallow water regions (Toyoura and Sawara to Yakumo and the deeper water areas (center of the bay. The spatial model built from the RQ provided robust estimation of the scallop larvae distributions in the study area, as confirmed by model validation using independent data. These findings could contribute on the monitoring program in this region in order to distinguish the potential areas for an effective spat collection.

  8. Sobrevivencia y crecimiento de post-larvas de Argopecten purpuratus (Lamarck, 1819 en Bahía Inglesa, Chile: efectos del origen, distribución en la bahía y bacterioflora larval Postlarval survival and growth of Argopecten purpuratus (Lamarck,1819 in Bahia Inglesa, Chile: effects of origin, distribution in the bay and larval bacterioflora

    Directory of Open Access Journals (Sweden)

    RUBÉN E. AVENDAÑO

    2001-09-01

    Full Text Available Argopecten purpuratus es uno de los recursos marinos de mayor importancia comercial en Chile. Una de las etapas críticas en el cultivo de esta especie, es el traspaso de las post-larvas al medio natural, ya que durante este período se produce un significativo descenso en el número de post-larvas. Los factores que provocan estas bajas sobrevivencias pueden ser diversos, pero aún son desconocidos. En el presente estudio se evaluó la incidencia en la sobrevivencia y crecimiento de las variables origen de las larvas, distribución de los colectores en diferentes estaciones de Bahía Inglesa, III región (27° 03' 24" S, 70° 51' 30" O y los cambios en la bacterioflora asociadas a las post-larvas. Los organismos utilizados en el estudio fueron obtenidas desde los "hatcheries" de Cultivos Marinos Internacionales (III región y Cultivos Guayacán (IV región. Los resultados del estudio indican claramente que la ubicación y origen de las post-larvas en la bahía incide en la sobrevivencia de éstas. Sin embargo, el crecimiento no es afectado por las variables estudiadas (P Argopecten purpuratus is one of the most commercially important marine resources in Chile. One of the most critical steps in the massive culture of this species is the transference of postlarvae from hatchery production to the sea where significant mortality regularly occurs. The factors behind this low survival rate are probably diverse, and are as yet unknown. In the present study, postlarval survival and growth was observed as a function of origin of postlarvae, distribution of postlarvae in the bay, and microbial loading of the postlarvae. Survival rates were measured for different sites in Bahia Inglesa, Chile (27° 03' 24" S, 70° 51' 30" W as well as changes in the bacterioflora of the postlarvae. Postlarvae utilized in the study were obtained from Cultivos Marinos Internacionales (III Región and Cultivos Guayacan (IV Región. Results of the study clearly indicated that

  9. The role of Argopecten purpuratus shells structuring the soft bottom community in shallow waters of southern Peru

    Science.gov (United States)

    Lomovasky, Betina J.; Gamero, Patricia A.; Romero, Leonardo; Firstater, Fausto N.; Gamarra Salazar, Alex; Hidalgo, Fernando; Tarazona, Juan; Iribarne, Oscar O.

    2015-12-01

    Accumulation of Argopecten purpuratus shells often occurs after El Niño events in shallow waters of Independencia Bay (14°17‧S-76°10‧W; Pisco, Peru). Here we experimentally investigate the effects of their shell accumulation on macrobenthos assemblages in soft bottom, shallow areas of the bay. A field experiment (from May 2006 to May 2007), including four treatments with different coverage levels of empty shells of A. purpuratus, were randomly arranged in: (1) areas devoid of shells ("Empty" treatment: experimental control), (2) 50% of the plot area covered with shells haphazardly distributed over the bottom ("medium" treatment), (3) 100% of the plot area covered with shells, forming a 10 cm valve layer ("full" treatment) and (4) "natural control". We found a total of 124 taxa throughout the experiment. Polychaetes, crustaceans and mollusks were the most abundant groups in "natural controls", dominated by the gastropod Nassarius gayi and the polychaetes Prionospio peruana, Platynereis bicanaliculata and Mediomastus branchiferus. The abundance of individuals (N) and the species richness (S) were higher in the "medium" treatment, but only in one month under positive sea bottom thermal anomalies. Similarity analysis (Bray-Curtis) showed that "natural control", "empty" and "full" treatments were more similar among them than the "medium" treatment. Multidimensional analysis showed no clear species association among treatments and a higher grouping among the samplings of Jun-06, Aug-06 and Nov-06. Our results also showed that the commercial crab Romaleon polyodon and the polyplacophora Tonicia elegans were positively affected by shell accumulations ("medium" treatment), while the limpet Fissurella crassa was negatively affected. Our study shows that directly by changing habitat structure or indirectly by changing sediment characteristics, the addition of scallop shells to the soft bottom can modify the macrobenthic assemblage; however, the seasonal oceanographic

  10. 一种清洗海湾扇贝装置的设计%The Design of Bay Scallops Cleaning Machine

    Institute of Scientific and Technical Information of China (English)

    滕桂君; 弋景刚; 李娜; 刘江涛

    2015-01-01

    Because of the cleaning of argopecten irradias in the process of argopecten irradias processing at home and abroad mainly adopts artificial cleaning , which takes up a lot of labor resources .To reduce artificial participation in the manufacturing process of argopecten irradias, I put forward to use the spiral brush roller type cleaning method to clean argopecten irradias, and do a lot of relevant tests .Based on them, I designed the cleaning machine specifically for cleaning argopecten irradias , combined with the related cleaning mechanism in view of the characteristics of argopecten irradias to improve and innovate design the main feature , making its structure more simple , more practical .This device has better cleaning effect for silt impurities on the surface of argopecten irradias .In the design of the hollow spiral brush roller can also have the effect of cleaning and transportation , and there is water spray over the brush roller make the cleaning effect better .In addition , I also design a wastewater treatment equipment , completed the water resources recy-cling .%目前,国内外海湾扇贝加工过程中海湾扇贝的清洗主要采用人工清洗,占用了大量的劳动力资源。为减少海湾扇贝加工过程中人工的参与,提出了螺旋毛刷辊式清洗海湾扇贝的方法,并做了大量的相关试验。为此,设计了专门用于清洗海湾扇贝的清洗机,并针对海湾扇贝的特点对主要功能部件进行了改良和创新设计,使其结构更简单、更实用,对海湾扇贝表面的泥沙、杂质有更好的清洗效果。设计中,采用空心的螺旋毛刷辊可同时起到清洗和运输的作用,而且毛刷辊上方有喷水管,清洗效果更好。此外,设计了废水处理装置,完成了水资源的回收再利用。

  11. Application of monoclonal antibody against granulocytes of scallop Chlamys farreri on granulocytes occurrence at different developmental stages and antigenic cross-reactivity of granulocytes in five other bivalve species.

    Science.gov (United States)

    Xing, Jing; Tang, Xiaoqian; Ni, Yongqing; Zhan, Wenbin

    2014-01-01

    A monoclonal antibody (MAb) 6H7 raised specifically against granulocytes of scallop (Chlamys farreri) was employed to observe granulocyte occurrence successively in blastulae, gastrulae, trochophore larvae, D-shape larvae, umbo-veliger larvae and creeping larvae of C. farreri by immunohistochemistry assay contrasted with H&E stain using semi-thin sections. Moreover, the reactivity of the MAb with granulocytes of C. farreri, Bay scallop Argopecten irradians, Japanese scallop Patinopecten yessoensis, Blue mussel Mytilus edulis, Pacific oyster Crassostrea gigas and Manila clam Ruditapes philippinarum, was detected by immunofluorescence assay (IFA) with differential interference contrast and fluorescent microscopy and flow cytometric immunofluorescence assay (FCIFA). The results showed that positive signals were first observed at D-shape larval stage, about 28 h post fertilization, after that, umbo-veliger larvae exhibited the positive cells with a diameter of 3-5 μm distributed in velum, digestive gland and esophagus. Then in creeping larvae, the number of positive cells increased with average diameter of 5-7 μm, and widely distributed in foot, digestive gland, gills and adductor muscles. No positive signal was found in blastulae, gastrulae and trochophore larvae. The results of IFA and FCIFA showed MAb 6H7 reacted to granulocytes of C. farreri, A. irradians, P. yessoensis and C. gigas, and the positive percentage reactivity were 53 ± 2.5%, 15 ± 2.5%, 12 ± 2.1% and 19 ± 2.1%, respectively, however, no cross-reaction was detected in hemocytes of R. philippinarum and M. edulis.

  12. ATTACHMENT OF LARVA, SURVIVAL AND GROWTH OF JUVENILE VARIANT SCALLOPS (Chlamys varia Linnaeus, 1758 IN CONTROLLED BREEDING IN ŠARINA DRAGA BAY — MOUTH OF THE KRKA RIVER

    Directory of Open Access Journals (Sweden)

    Drago Marguš

    2005-07-01

    Full Text Available In Croatia, the capture of scallop (Chlamys varia Linnaeus, 17583 from natural populations are sporadic and unorganized, while there is no controlled cultivation of this species. To determine the possibility of the establishment of their commercial cultivation, the research comprehended the condition index of adults, larval attachment, juvenile survival and growth in Šarina draga Bay, in a locality with dense scallop populations. The changes of condition index shoved on main spawning season in spring (March–May and second one, but less intensive, in autumn (October. According to results, the best season for juvenile collection is recommended the period from July to September at depths between 2 to 10 m, and salinities above 30 x 10–3. Low larval settlement at 2.5 m depth is surely result of salinity decrease by Krka river intensive fresh water inflow. Shellfish mean size from 16.4±2.1 to 17.6±2.2 mm and with a mean mass from 0.95 to 1.35 g reached mean size from 42.7±3.2 to 47.5±3.0 mm and mean mass from 12.1 to 17.5 g in one year. Total mortality during this study was ranged from 25 to 57%.

  13. Sea Scallop Survey

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The standardized NEFSC Sea Scallop Survey began in 1980 and has covered an area from Cape Hatteras to Georges Bank. The survey aims to determine the distribution and...

  14. Pycnogonids associated with the giant lion´s-paw scallop Nodipecten subnodosus (Sowerby) in Ojo de Liebre Bay, Guerrero Negro, Baja California Sur, Mexico.

    Science.gov (United States)

    de León-Espinosa, Angel; de León-González, Jesus A

    2015-01-01

    Five species of epibenthic pycnogonids collected on the giant lion´s-paw scallop Nodipecten subnodosus are recorded. A new species of Eurycyde, Eurycyde bamberi, is described. Of the 19 species known in this genus; the new species is closest to Eurycyde hispida Kroyer, 1844 but differs from it in the absence of plumose spines and the shapes of the lateral process, first coxa, and ocular tubercle. The new species represents the third member of Eurycyde from the eastern Pacific in addition to Eurycyde spinosa Hilton, 1916 and Eurycyde clitellaria Stock, 1955. Besides Eurycyde bamberi, the following species were collected: Nymphopsis duodorsospinosa Hilton, 1942c; Callipallene californiensis (Hall, 1913); Nymphon lituus Child, 1979; and Pycnogonum rickettsi Schmitt, 1934. Pycnogonum rickettsi is recorded for first time from Mexican waters, as is Nymphon lituus from the western coast of Baja California Peninsula. Each of these four species are re-described and re-illustrated in order to fill in existing gaps in the literature of the region.

  15. Growth and survival larvae of Argopecten nucleus fed with different microalgae diets

    Directory of Open Access Journals (Sweden)

    Yenia Katerine Carreño Hernández

    2012-06-01

    Full Text Available The influence of the diet on larval growth of the scallops Argopecten nucleus was studied, testing six microalgae diets composed by single-algae and mixed diets of the species Isochrysis galbana, Chaetoceros calcitrans y Tetraselmis suecica, handling a concentration per mL equivalent to 40000 cells of I. galbana and the response through the variables surviving, growth, appearance of the eye spot and state of condition (full, half-full and empty larvae was measured. The diets containing I. galbana showed greater results over all the measured variables, with regard to those where it was not present. In particular, the mixed diet I. galbana + C. calcitrans presented superiority over all variables, although in the most cases was statistically similar to I. galbana + C. calcitrans + T. suecica, I. galbana + T. suecica and I. galbana alone. For the opposite, the diets with the lowest results were C. calcitrans and C. calcitrans +T. suecica. The results obtained are principally attributed to the nutritional composition mainly of high unsaturated fatty acids (HUFA of each microalgae and each mixture supply, which is discussed in detail.

  16. Murky Waters The Bohai Bay oil spill brings China's marine liability laws into focus

    Institute of Scientific and Technical Information of China (English)

    WANG HAIRONG

    2011-01-01

    Scallop farmers in Laoting County in north China's Hebei Province had been unaware a catastrophe was approaching their farms south of the Bohai Bay until late June when they found millions of young scallops dead.

  17. 单胺类及5-羟色胺拮抗剂对海湾扇贝幼虫生长的影响%Effects of Monoamines and 5-HT Antagonists on Larval Growth in Bay Scallop

    Institute of Scientific and Technical Information of China (English)

    马斌; 刘全圣; 王伟; 赵侠; 赵玉明; 王春德

    2016-01-01

    L‐dopamine and serotonin (5‐HT ) are routine monoamine neurotransmitters that may have dual effects on the larval growth of the bay scallop A rgopecten irradians irradians .They may accelerate larval growth by stimulating cilia beating and thus feeding while inhibition of larval growth may occur as a result of extra energy cost caused by accelerated ciliary movements .This study aimed to determine the ultimate outcome of the dual effects of L‐dopamine and 5‐HT on larval growth and also explore the underlying mechanism by examining the actions of 5‐HT and its antagonists ,trazodone and cyproheptadine .The re‐sults showed that larval growth was most accelerated by 0 .1 ng/L L‐dopamine and 1 .0 ng/L 5‐HT .The blockade of the 5‐HT actions by its antagonists suggests that 5‐HT may exert its effects via its binding to 5‐HT2 A receptor .These monoamines may be potentially used to accelerate larval growth in scallop cul‐ture .%单胺类药物左旋多巴胺和5‐羟色胺一方面可能促进海湾扇贝幼虫纤毛活动从而促进幼虫摄食,另一方面引起纤毛运动强度的改变,又影响幼虫的能量消耗,因此对扇贝幼虫的生长可能存在着双重影响。以海湾扇贝幼虫为研究对象,探讨了左旋多巴胺和5‐羟色胺及5‐羟色胺的两种拮抗剂曲唑酮和赛庚啶对其生长的影响及其可能的作用机制。试验结果表明,0.1ng/L左旋多巴胺和1.0ng/L5‐羟色胺对海湾扇贝幼体的生长率促进作用最强,而5‐羟色胺的促生长作用可被曲唑酮和赛庚啶抑制,说明5‐羟色胺可能是通过5‐HT1或5‐HT2型受体起作用的。在海湾扇贝的育苗实践中可以选择使用低质量浓度的5‐羟色胺以促进幼虫的生长。

  18. Depuration of paralytic shellfish toxins in Japanese scallop (Patinopecten yessoensis) in natural environment

    Institute of Scientific and Technical Information of China (English)

    SONG Tao; LIU Lei; SONG Xiaoping; LIANG Yubo; ZHUANG Guohong

    2015-01-01

    To study the paralytic shellfish toxins (PSTs) depuration in Japanese scallopPatinopecten yessoensis in natural environment, Japanese scallops naturally contaminated with paralytic shellfish poisoning (PSP) toxins in the Dayao Bay in the northern Huanghai Sea are transited to Qipanmo waters in the Bohai Sea of no reported PSTs incidents. The levels and profile of PSTs during 30-day depuration are detected by the high performance liquid chromatography with fluorescence detection (HPLC-FLD). The results show that the toxicity of the PSTs in soft tissues decreases to a relatively low level at Day 9. Moreover, the depurated ratio at the early stage of the PSTs depuration is higher than that at the later stage. The toxicity analysis of dissected organs reveals that the digestive gland is the most contaminated PSTs part, which is of important implication for the human health and scallop aquiculture. The mortality of Japanese scallops during PSTs depuration experiment is relevant to PSTs level in the soft tissue.

  19. Scallop License Limitation Program (SLLP) Permit Program

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A federal Scallop License Limitation Program (SLLP) license is required onboard any vessel deployed in scallop fisheries in Federal waters off Alaska (except for...

  20. Ecological effect of Kelp in polyculture system with Argopecten irradias%海带在贝藻混养生态系统中的生态效应模拟研究

    Institute of Scientific and Technical Information of China (English)

    郑辉; 崔力拓; 潘娟

    2014-01-01

    The experiment on the polyculture of scallop and kelp was made in laboratory by the methods of simulated aquaculture system during November to December in 2013, Polyculture systems of Argopecten irradias and kelp were divided into 4 groups. the scallop were reared at a density of 48 individuals/m3 ,and the kelp were cultivated at a density of 69, 135, 275 or 405 g /m3 . During the experiment, the variations of nutrients, survival and growth of the scallop and kelp were detected every 7 days. In conclusion, we could make a conclusion that polyculture the Argopecten irradias with the seaweed can take reasonable ecological effects. And the density of the two must be equally.%利用模拟养殖系统的方式进行贝藻混养试验研究。选用海湾扇贝( Argopecten irradias )和海带( Laminaria japonica aresch)作为研究对象,采用4种配比模式对贝藻进行混合养殖,各混养组扇贝密度均为48只/m3,海带密度分别为69、135、275、405 g/m3。每周采样测定水体中营养盐(NH+4-N、TN、PO3-4-P、COD)的含量及养殖生物的生长情况。试验结果表明,在扇贝养殖系统中引入大型海藻海带可以改善水产养殖区域水体环境的环境质量,海湾扇贝和海带以1∶1(贝肉湿质量∶藻类湿质量)的比例进行混合养殖能取得较好的生态环境效应。

  1. 50 CFR 648.56 - Scallop research.

    Science.gov (United States)

    2010-10-01

    ... 50 Wildlife and Fisheries 8 2010-10-01 2010-10-01 false Scallop research. 648.56 Section 648.56... Scallop Fishery § 648.56 Scallop research. (a) Annually, the Council and NMFS shall prepare and issue a Request for Proposals (RFP) that identifies research priorities for projects to be conducted by...

  2. Regional variation in bycatches associated with king scallop (Pecten maximus L.) dredge fisheries.

    Science.gov (United States)

    Szostek, Claire L; Murray, Lee G; Bell, Ewen; Lambert, Gwladys; Kaiser, Michel J

    2017-02-01

    The biomass and composition of bycatch from king scallop dredge fisheries was assessed and compared between the English Channel, Cardigan Bay in Wales and around the Isle of Man. Bycatch composition varied significantly at localised, and broad, geographic scales. The mean proportion of scallop dredge bycatch biomass in the English Channel was 19% of total catch biomass. The proportion of bycatch was lower in Cardigan Bay (15%) but notably higher around the Isle of Man (53%). The proportion of individual bycatch species in dredge catches were low, therefore scallop dredging is unlikely to cause a substantial increase the population mortality of individual commercially fished species beyond that caused by the target fisheries for those species, or bycatches of other fisheries. The amount and mortality of organisms left on the seabed in the dredge path was not quantified in this study but should also be considered in management of the fishery. The discard rate of finfish and shellfish of commercial value from the king scallop dredge fishery in the English Channel was between 18 and 100%, with a higher rate of discarding occurring in the eastern English Channel compared to the west. The clear regional differences in bycatch composition and variation in the quantity of discards mean that an area by area approach to managing bycatch species is required in relation to the king scallop dredge fishery.

  3. 50 CFR 648.59 - Sea Scallop Access Areas.

    Science.gov (United States)

    2010-10-01

    ... September 1 through October 31 of each year the Delmarva Access Area is open to scallop fishing as a Sea... Closed Area I Sea Scallop Access Area is open to scallop vessels, unless transiting pursuant to paragraph... each year the Elephant Turnk Access Area is open to scallop fishing as a Sea Scallop Access...

  4. Comparación del crecimiento de Argopecten purpuratus entre cohortes obtenidas de captación de larvas en ambiente natural y de hatchery Comparison of growth among cohorts obtained Argopecten purpuratus larval recruitment in natural and hatchery

    Directory of Open Access Journals (Sweden)

    Eduardo P Pérez

    2012-11-01

    Full Text Available En Chile los cultivos del ostión del norte Argopecten purpuratus han sido desarrollados intensivamente a partir de la captación de semillas en ambiente natural y desde principios de 1980 con semillas obtenidas en hatchery. Para aportar información sobre el desempeno de semillas de ostión del norte en este estudio se comparó, mediante ANCOVA, el crecimiento en longitud entre cohortes producidas a partir de semillas de ambiente natural y de hatchery en Tongoy, Chile. Se evaluó la consistencia de esta comparación en distintos anos y estaciones, comparándose parejas de cohortes producidas simultáneamente en los anos 2003 (primavera, 2005 (invierno y 2006 (verano. El análisis estadístico mostró que existen diferencias estadísticas significativas entre cohortes obtenidas en ambiente natural y aquellas obtenidas en hatchery. La prueba de Tukey evidenció diferencias significativas entre CN2003 y CH2003 como también entre CN2005 y CH2005, pero no así entre CN2006 y CH2006. Estas diferencias indican que las cohortes de semillas de ambiente natural crecieron más rápido que las de hatchery. La comparación interanual evidenció diferencias estadísticas significativas. Estos resultados son discutidos a la luz de dos factores: la temperatura de cultivo y la heterocigocidad de la población de cultivo.In Chile crops of the northern scallop Argopecten purpuratus have been developed intensively from seeds obtained in natural environment, and since 1980 from hatchery's seed, when this technique could be controlled and developed. In order to provide information on the performance of seeds of northern scallops in this study growth in length between cohorts produced from seeds obtained in natural environment (CN and hatchery (CH in Tongoy (Chile was compared using ANCOVA. We assessed the consistency of this comparison in different years and seasons. The compared cohorts are pairs of cohorts produced simultaneously in the years 2003 (spring, 2005

  5. Scalloping at the lumbosacral canal

    Energy Technology Data Exchange (ETDEWEB)

    Reinhardt, R.

    1987-07-01

    Scalloping is an indentation of the dorsal side of the vertebral body (anterior wall of the lumbosacral or sacral canal) which typically involves several adjacent lumbal vertebral body segments and the anterior wall of the canalis sacralis. Occurrence without underlying disease is rare; it occurs most frequently with chondrodystrophy, neurofibromatosis, Morquio's syndrome, Hurler's syndrome, acromegaly, Ehlers-Danlos syndrome, Marfan's syndrome, cysts, tumors and in peridural lipomas.

  6. 渔业生物学

    Institute of Scientific and Technical Information of China (English)

    1998-01-01

    980375 海湾扇贝 Argopecten irradians co-ncentricus(Say)仔贝和稚贝对绿光等边金藻的澄清率和摄食率=Clearance and inges-tion rates of Isochrysis galbana by larval andjuvenile bay scallops,Argopecten irradiansconcentricus(Say)[刊,英]/Lu Y T,Blake NJ//J.Shell.Res..—1997,16(1).—47~54利用绿光等边金藻 Isochrysis galbana

  7. Scalloped electrodes for highly sensitive electrical measurements

    DEFF Research Database (Denmark)

    Vazquez Rodriguez, Patricia; Dimaki, Maria; Svendsen, Winnie Edith

    2011-01-01

    In this work we introduce a novel out-of-plane electrode with pronounced scalloped surface and high aspect ratio for electrical recordings of brain tissue in vitro, with the aim to reduce significantly the impedance of the measuring system. The profile and height of the structures is tailored...... by means of silicon fabrication techniques that sharpen them progressively and in a controlled manner. We will show that the use of the scalloped area achieves a great decrease in impedance, which is very significant for a reduction of noise in electrical measurements. The measured impedance reflects...

  8. Yorkie and Scalloped: partners in growth activation.

    Science.gov (United States)

    Bandura, Jennifer L; Edgar, Bruce A

    2008-03-01

    The Hippo (Hpo) signaling pathway limits organ growth in organisms from Drosophila to mammals by suppressing the activity of the transcriptional coactivator Yorkie (Yki)/YAP. The TEAD/TEF factor Scalloped (Sd) has been identified as the first known transcription factor to partner with Yki as a downstream target of Hpo signaling.

  9. Importance of kelp-derived organic carbon to the scallop Chlamys farreri in an integrated multi-trophic aquaculture system

    Science.gov (United States)

    Xu, Qiang; Gao, Fei; Yang, Hongsheng

    2016-03-01

    Bivalves and seaweeds are important cleaners that are widely used in integrated multi-trophic aquaculture (IMTA) systems. A beneficial relationship between seaweed and bivalve in the seaweed-based IMTA system has been confirmed, but the trophic importance of seaweed-derived particulate organic materials to the co-cultured bivalve is still unclear. We evaluated the trophic importance of the kelp Saccharina japonica to the co-cultured scallop Chlamys farreri in a typical IMTA farm in Sungo Bay (Weihai, North China). The dynamics of detritus carbon in the water were monitored during the culturing period. The proportion of kelp-derived organic matter in the diet of the co-cultured scallop was assessed via the stable carbon isotope method. Results showed that the detritus carbon in the water ranged from 75.52 to 265.19 μg/L, which was 25.6% to 73.8% of total particulate organic carbon (TPOC) during the study period. The amount of detritus carbon and its proportion in the TPOC changed throughout the culture cycle of the kelp. Stable carbon isotope analysis showed that the cultured scallop obtained 14.1% to 42.8% of its tissue carbon from the kelp, and that the percentages were closely correlated with the proportion of detritus carbon in the water ( F =0.993, P= 0.003). Evaluation showed that for 17 000 tons (wet weight) of annual scallop production, the kelp contributed about 139.3 tons of carbon (535.8 tons of dry mass). This confirms that cultured kelp plays a similar trophic role in IMTA systems as it does in a natural kelp bed. It is a major contributor to the detritus pool and supplies a vital food source to filter-feeding scallops in the IMTA system, especially during winter and early spring when phytoplankton are scarce.

  10. 78 FR 42890 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery and Northeast...

    Science.gov (United States)

    2013-07-18

    .... * * * * * Open areas, with respect to the Atlantic sea scallop fishery, means any area that is not subject to... port of departure, open area or specific Sea Scallop Access Area to be fished, and whether fishing as a... with a reduced DAS accrual rate for open area scallop trips or additional scallop catch per day in...

  11. Preoperative scallop-by-scallop assessment of mitral prolapse using 2D-transthoracic echocardiography

    Directory of Open Access Journals (Sweden)

    Leonetti Stefania

    2010-01-01

    Full Text Available Abstract Background This study was conducted to assess the accuracy of harmonic imaging 2D-transthoracic echocardiography (2D-TTE segmental analysis compared to surgical findings, in degenerative mitral regurgitation (MR. Methods Seventy-seven consecutive patients with severe degenerative MR were prospectively enrolled. Preoperative 2D-TTE with precise localization of prolapsing or flailing scallops/segments was performed. All patients underwent mitral valve surgical repair. Surgical reports (SR, including valve description, were used as references for comparisons. A postoperative control 2D-TTE was performed. Results Out of 462 scallops/segments studied, surgical inspection identified 102 prolapses or flails (22%, 92 of which had previously been detected by 2D-TTE (90.2% sensitivity, 100% specificity. Agreement between preoperative 2D-TTE segmental analysis and SR was 97.8% (k = 0.93; p Conclusions 2D-TTE, performed by an experienced echo-lab, has very good diagnostic accuracy in localizing the scallops/segments involved in degenerative MR, particularly for the middle ones (P2-A2, which represent almost the totality of prolapses. More invasive, time consuming and expensive exams should be reserved to selected cases.

  12. Scallop DMT functions as a Ca2+ transporter.

    Science.gov (United States)

    Toyohara, Haruhiko; Yamamoto, Sayuri; Hosoi, Masatomi; Takagi, Masaya; Hayashi, Isao; Nakao, Kenji; Kaneko, Shuji

    2005-05-01

    We identified a DMT (divalent metal transporter) homologous protein that functions as a Ca(2+) transporter. Scallop DMT cDNA encodes a 539-amino-acid protein with 12 putative membrane-spanning domains and has a consensus transport motif in the fourth extracellular loop. Since its mRNA is significantly expressed in the gill and intestine, it is assumed that scallop DMT transports Ca(2+) from seawater by the gill and from food by the intestine. Scallop DMT lacks the iron-responsive element commonly found in iron-regulatory proteins, suggesting that it is free of the post-transcriptional regulation from intracellular Fe(2+) concentration. Scallop DMT distinctly functions as a Ca(2+) transporter unlike other DMTs, however, it also transports Fe(2+) and Cd(2+) similar to them.

  13. Heat treatment of scallop adductor muscle using superheated steam.

    Science.gov (United States)

    Abe, T; Miyashita, K

    2007-08-01

    Scallop (Patinopecten yessoensis) adductor muscles were heated using superheated steam (150 and 200 degrees C), boiling (98 degrees C), and normal steaming (95 degrees C). The amounts of amino acids, water-soluble peptides, and nucleotides, expressed as extractive nitrogen in scallop products, are very important elements of quality and taste. After 15-min heating of scallop muscles with normal steaming and boiling, respective losses of 50% and 64% of the extractive nitrogen were observed. However, most extractive nitrogen (> 86%) remained in the scallop muscles treated with superheated steam at 150 and 200 degrees C. Protective effects of superheated steam against elution loss of nitrogen compounds were also observed in amino acid analyses of the heated products. The scallop-muscle surface temperature during treatment with superheated steam increased more quickly than that with normal steaming and boiling. The rapid water loss and the surface protein denaturation engendered formation of a 30-mum-thick film covering the surface, which prevented extractive nitrogen loss from internal tissues. Superheated steam treatment at 200 degrees C caused browning, surface shrinkage, and 47% weight loss. In marked contrast, the appearance and the weight loss of sample treated at 150 degrees C were almost the same as those of normal steaming and boiling-treated samples. These results suggested that superheated steaming at 150 degrees C is an optimal heat treatment of scallop adductor muscles.

  14. Spring molybdenum enrichment in scallop shells: a potential tracer of diatom productivity in coastal temperate environments (Brittany, NW France?

    Directory of Open Access Journals (Sweden)

    A. Barats

    2009-08-01

    Full Text Available Skeletal molybdenum/calcium ([Mo]/[Ca]shell ratios were recently examined in bivalves. These ratios were determined by quantitative LA-ICP-MS analyses every third daily striae (i.e. a temporal resolution of 3 days in 36 flat valves of the Great Scallop shells Pecten maximus (2-year old; 3 shells/year collected in temperate coastal environments of Western Europe (42 to 49° N. Variations of ([Mo]/[Ca]shell ratio were significant and reproducible for scallops from a same population, from different years (1998–2004 and from different coastal temperate locations. ([Mo]/[Ca]shell exhibits typical profiles characterized by a background content, below the method detection limit (<0.003 μmol/mol for most of the shell growth period, which is punctuated by a significant transient enrichment (0.031−2.1 μmol/mol mainly occurring from May to June. The Bay of Brest (France was especially investigated because of long term observations on scallop communities, environmental variables, and high resolution analyses of dissolved Mo in bottom seawater in 2000. In 2000, dissolved Mo exhibited significant increasing concentration just preceding a maximum of ([Mo]/[Ca]shell ratio. The environmental conditions preceding ([Mo]/[Ca]shell maximum events, both in 2000 and over the 7-year survey indicates a direct influence of the scallop environmental conditions at the sediment water interface subsequent to the intense and periodic spring bloom event. Spring maxima of ([Mo]/[Ca]shell ratio were found to be specifically related to the dynamic of spring diatom blooms and to the extent of the subsequent silicate depletion. ([Mo]/[Ca]shell records reveal thus unexpected biogeochemical routes of Mo, potentially related to coastal spring productivity.

  15. 76 FR 23940 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Framework Adjustment 22

    Science.gov (United States)

    2011-04-29

    ... (LAGC) fleets; open area days-at-sea (DAS) and Sea Scallop Access Area (access area) trip allocations... United States; Atlantic Sea Scallop Fishery; Framework Adjustment 22 AGENCY: National Marine Fisheries... 22) to the Atlantic Sea Scallop Fishery Management Plan (FMP), which was developed and adopted by...

  16. 76 FR 43773 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Framework Adjustment 22

    Science.gov (United States)

    2011-07-21

    ... access general category (LAGC) fleets; open area days-at-sea (DAS) and Sea Scallop Access Area (access... Part 648 Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Framework... 0648-BA72 Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery;...

  17. 76 FR 40674 - Fisheries of the Exclusive Economic Zone Off Alaska; Scallops

    Science.gov (United States)

    2011-07-11

    ... category for non-target scallop species. With adoption of Amendment 13, the Council intended to bring the... fisheries off Alaska. These non-target scallop species occupy habitats at different depths than the targeted... indicate that any of the non-target scallop species are overfished, subject to overfishing or...

  18. 77 FR 28311 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Closure of the...

    Science.gov (United States)

    2012-05-14

    ... Area are 111,540 lb (51 mt) and 72,000 lb (33 mt), respectively. * * * * * (e) * * * (1) * * * (iv... United States; Atlantic Sea Scallop Fishery; Closure of the Delmarva Access Area AGENCY: National Marine...). This emergency rule closes the Delmarva Scallop Access Area (Delmarva) to all scallop vessels for the...

  19. Continuous breakdown of Purcell's scallop theorem with inertia

    CERN Document Server

    Lauga, Eric

    2007-01-01

    Purcell's scallop theorem defines the type of motions of a solid body - reciprocal motions - which cannot propel the body in a viscous fluid with zero Reynolds number. For example, the flapping of a wing is reciprocal and, as was recently shown, can lead to directed motion only if its frequency Reynolds number, Re_f, is above a critical value of order one. Using elementary examples, we show the existence of oscillatory reciprocal motions which are effective for all arbitrarily small values of the frequency Reynolds number and induce net velocities scaling as (Re_f)^\\alpha (alpha > 0). This demonstrates a continuous breakdown of the scallop theorem with inertia.

  20. EFECTO DE Ulva spp. SOBRE EL CRECIMIENTO Y SUPERVIVENCIA DE Argopecten purpuratus EN LA BAHÍA DE PARACAS

    OpenAIRE

    Arce Castro, Daniel; Av. Nueva Toledo 242 B, Cieneguilla (Perú).; Mendo, Jaime; Universidad Nacional Agraria La Molina (Perú).

    2014-01-01

    Este estudio compara el crecimiento y supervivencia de Argopecten purpuratus (Lamarck, 1819) “concha de abanico” sembradas con diferentes densidades de Ulva spp., Linnaeus, 1753 en la bahía Paracas (Ica-Perú) durante el 7 agosto al 16 de octubre del 2011. Para ello se instalaron tres corrales cada uno con tres unidades experimentales de 1m2 y en cada unidad se sembraron conchas de abanico de 40-50mm de altura a una densidad de 60 individuos/m2. En dos de los corrales se sembró Ulva spp., con ...

  1. 栉孔扇贝和海湾扇贝体内谷胱甘肽含量及其相关酶的活性%CONTENTS OF GLUTATHIONE AND ACTIVITIES OF RELATIVE ENZYMES IN CHLAMYS FARRERI AND ARGOPECTEN IRRADIANS

    Institute of Scientific and Technical Information of China (English)

    高维锡; 刘建伟; 孙虎山

    2011-01-01

    采用标准测定试剂盒测定了人工养殖的栉孔扇贝(Chlamys frreri)和海湾扇贝(Argopecten irradians)血淋巴及肝、肾、鳃、外套膜、唇瓣中谷胱甘肽(GSH)的含量及3种相关酶-谷胱甘肽还原酶(GR)、谷胱甘肽过氧化物酶(GSH-PX)和谷胱甘肽转硫酶(GST)的活力.结果表明:GSH及GR、GSH-PX、GST在上述组织和器官中均被检测到.GSH在血细胞和唇瓣中含量最高;GR在血细胞中活力最强;GSH-PX和GST均在肝脏和肾脏中活力最强.海湾扇贝各种器官中GSH的含量均高于栉孔扇贝,其中在血细胞、肝脏和血清中差异极显著,在唇瓣、肾脏、外套膜和鳃中差异显著.海湾扇贝各组织器官中的GR、GSH-PX和GST的酶活力均高于栉孔扇贝,其中GR活力在2种扇贝的血细胞、外套膜和血清中差异极显著,在肝脏、肾脏、鳃和唇瓣中差异显著;GSH-PX活力在肝脏、肾脏、血细胞、外套膜和鳃中差异极显著,在唇瓣和血清中差异显著;GST活力在肝脏、肾脏和外套膜中差异极显著,在唇瓣、血细胞、鳃和血清中差异显著.%The contents of glutathione (GSH) and the activities of three kinds of relative enzymes,glutathione reductase (GR), glutathione peroxidase ( GSH - PX) and glutathione - S - transferase (GST), in haemolymph, liver, kidney, gill, mantle and labial palps of Chlamys farreri and Argopecten irradians were assayed using standard determination kits. The results were as follow. GSH, GR, GSH - PX and GST were detected in all the tissue or the organs. The contents of GSH in haemocytes and labial palps were higher than other tissue or organs; the activity levels of GR in haemocytes were the highest in all of the tissue or organs; the activity levels of GSH - PX and GST in liver and kidney were the highest. The contents of GSH in A. irradians were higher than those of C. farreri, and the differences in the haemocytes, liver and serum were extremely significant; the differences in the

  2. Feeding and energetics of the great scallop, Pecten maximus, through a DEB model

    Science.gov (United States)

    Lavaud, Romain; Flye-Sainte-Marie, Jonathan; Jean, Fred; Emmery, Antoine; Strand, Øivind; Kooijman, Sebastiaan A. L. M.

    2014-11-01

    We developed a full life-cycle bioenergetic model for the great scallop Pecten maximus relying on the concepts of the Dynamic Energy Budget (DEB) theory. The covariation method was implemented to estimate the parameters of a standard DEB model. Such models are able to predict various metabolic processes from a food availability marker and temperature in the environment. However, suspension-feeders are likely to feed on various trophic sources, from microalgae cells to detritus. They are also able to sort and select food particles very efficiently, depending on their size, energetic value or quality. The present model includes a mechanistic description of the feeding processes, based on Kooijman's Synthesizing Unit principle which allows to deal with several food sources. Moreover we tested the hypothesis of a differential selectivity between two potential substrates (phytoplankton cell and the remaining particulate organic matter). Simulations of shell length, daily shell growth rate, dry weight and gonado-somatic index (GSI) variations were realized and compared to field data from a monitoring conducted in the Bay of Brest (Brittany, France) for six years. The model shows its capacity to efficiently reproduce all life history traits of the wild great scallops. Predicted length data were estimated to the nearest millimeter. The fit of simulated weights to observed data was very satisfactory. GSI predictions were also in accordance with observations but improvements are required to better capture the sharp increase of gametogenesis at the beginning of the year. Finally, results bring evidences that P. maximus is actually preferentially feed on living algae cells rather than on the rest of organic particles.

  3. The biochemical, textural and sensory properties of king scallop ...

    African Journals Online (AJOL)

    USER

    2010-07-12

    Jul 12, 2010 ... to 555 min may not influence the sensory quality of frozen scallop meats. Freezing of meats at the ... meat product (e.g. pH) prior to freezing (Hamm, 1975). ...... value) of 1000 min were less tender than the fresh ones. However ...

  4. Distribution and spatial trends of PCBs in commercial scallops from Galician littoral (NW, Spain). Possible influence of biometric parameters.

    Science.gov (United States)

    Carro, N; García, I; Ignacio, M; Mouteira, A

    2012-04-01

    Levels and profiles of 10 individual congeners of polychlorinated biphenyls (PCBs) were studied in 3 species of commercial scallops (Pecten maximus, Chlamys varia, and Chlamys opercularis) from several Rías in Galician littoral (NW, Spain). ΣPCBs levels ranged from 2.21 to 41.0 ng/g wet weight for P. maximus, from 13.9 to 24.9 ng/g wet weight for C. varia, and from 1.58 to 24.3 ng/g wet weight for C. opercularis. The possible influence between biometric parameters (lipid content, condition index, and shell size) and PCBs levels were studied using statistical analysis (ANOVA). No relationship between biometric parameters could be established in the studied samples. Multivariate analysis showed there were differences in bioaccumulation of some PCBs congeners. Principal component analysis classifies clearly the 3 studied Rías (Ría de Ferrol, Ría de Arousa, and Ría de Vigo) taking into account PCBs levels found in the shellfish. We investigated levels and profiles of 10 congeners of PCBs in 3 commercial scallop species from the Galician littoral zone. The influence of 3 biometric parameters on polychlorinated biphenyls (PCBs) levels was also studied in order to assess results from the monitoring programs of production areas. According to PCBs levels, geographical differences were observed in commercial scallops from the 3 studied estuarine bays (Ría de Ferrol, Ría de Arousa, and Ría de Vigo). © 2012 Institute of Food Technologists®

  5. Assessment of vertebral scalloping in neurofibromatosis type 1 with plain radiography and MRI

    Energy Technology Data Exchange (ETDEWEB)

    Tsirikos, A.I.; Ramachandran, M.; Lee, J.; Saifuddin, A. E-mail: asaifuddin@aol.com

    2004-11-01

    AIM: To evaluate vertebral scalloping in patients with neurofibromatosis type 1 (NF-1) and spinal deformity using plain radiographs and magnetic resonance imaging (MRI), and to determine the possible aetiological association with neurofibromas, dural ectasia and lateral meningocoeles. MATERIAL AND METHODS: Nineteen patients with NF-1, who had full spine radiographs and whole-spine MRI, were retrospectively reviewed. Dystrophic features and their relationship to the curve were recorded from radiographs. A comparison was then made between the dystrophic features evident on radiographs and adjacent soft-tissue abnormalities identified on MRI. RESULTS: Dystrophic changes were documented in 16 patients on plain radiographs and in all patients on MRI. Rib pencilling was the most common finding on radiographs. In 80% of the cases with scoliosis, scalloping was seen on the concavity of the curvature. In all patients with kyphoscoliosis, scalloping was contiguous to the apex of kyphosis. Twenty-four areas of scalloping were identified on MRI. Scalloping usually developed in the concavity of the scoliotic curve or at levels unrelated to the curve. Scalloping was evident in combination with dural ectasia or neurofibroma in 15 cases. The presence of dural ectasia was confirmed in 75% of the cases of posterior scalloping and in 25% of those of lateral scalloping. The presence of neurofibromas was recognized in 25% of the cases of anterior or lateral scalloping. Dural ectasia was identified in two patients without associated scalloping. Lateral meningocoeles were not related to the development of scalloping. CONCLUSION: Whereas posterior scalloping was commonly associated with dural ectasia, anterior and lateral scalloping were commonly the result of primary mesodermal dysplasia.

  6. Association of myostatin variants with growth traits of Zhikong scallop ( Chlamys farreri)

    Science.gov (United States)

    Fu, Qiang; Guo, Huihui; Feng, Liying; Li, Xue; Zhang, Lingling; Wang, Shi; Hu, Xiaoli; Bao, Zhenmin

    2016-02-01

    Scallop is a popular sea food and an important aquaculture shellfish. Identification of genes and genetic variants relating to scallop growth could benefit high-yielding scallop breeding. Myostatin ( MSTN) is a conservative regulator of muscle growth, and has become one of the most important target genes for genetic improvement of the production of farmed animals. In this study, four single nucleotide polymorphisms (SNPs) were identified in the 5' flanking region of MSTN gene ( CfMSTN) in Zhikong scallop ( Chlamys farreri). The association of these SNPs with scallop growth traits, including shell length, shell height, body weight and striated muscle weight was analyzed. The SNP g-1162Gmuscle weight. The TT type scallops showed significantly higher trait values than those of GT type, and the GG type individuals exhibited median values. On the contrary, significantly more CfMSTN transcripts were detected in the striated muscle of GT type scallops than in those of TT and GG type ones. Our results suggested that CfMSTN might regulate the scallop muscle growth negatively, and SNP g-1162Gscallop.

  7. Subcritical hydrothermal treatment for the recovery of liquid fertilizer from scallop entrails.

    Science.gov (United States)

    Hwang, In-Hee; Aoyama, Hiroya; Abe, Natsuki; Matsuo, Takayuki; Matsuto, Toshihiko

    2015-01-01

    Scallop entrails are organic wastes containing abundant proteins and minerals but are considered difficult to recycle because of high cadmium concentrations. In this work, the current problem of scallop entrails recycling was investigated and a subcritical hydrothermal treatment (SCHT) was examined for the recovery of liquid fertilizer from scallop entrails. Scallop entrails are mainly recycled for composting and feedstuff production. However, the dilution by mixing scallop entrails with other feed waste was the sole countermeasure to reduce the cadmium concentration of compost. For feedstuff production, whole product derived from scallop entrails was exported to other countries instead of domestic utilization. Temperature, retention time (RT) at given temperature, and liquid-to-solid (LS) ratio were examined as SCHT conditions for scallop entrails processing. The extraction ratio of each constituent mainly depends on the temperature rather than the RT or the LS ratio. Upon the SCHT of scallop entrails at 200°C, an RT of 20 min, and an LS ratio of 10, the extraction of fertilizer constituents such as nitrogen, phosphorus, and potassium from the liquid product was optimum, whereas the release of cadmium was suppressed. The concentrations of heavy metals in the liquid product obtained using the above-mentioned SCHT conditions were below the maximum permissible concentration stipulated by the Fertilizer Control Law. SCHT is considered to be a feasible recycling method for scallop entrails to recover fertilizer components with a concomitant separation of cadmium from the product.

  8. Effects of glycosaminoglycan from scallop skirt on foam cell

    Institute of Scientific and Technical Information of China (English)

    Fu-shengSUN; SaiLIU

    2004-01-01

    AIM: To study effects of glycosaminoglycan from scallop skirt (SS-GAG) on NO production, antioxidative enzyme activity,and formation of macrophage-derived and smooth muscle cell-derived foam cell; to study the effects of SS-GAG on VEGF expression, intracellular Ca2~ level, and cytokines secretion of macrophage-derived foam cell. METHODS: Foam-like cells were generated by incubating the U937 cells or porcine artery smooth

  9. An SCD gene from the Mollusca and its upregulation in carotenoid-enriched scallops.

    Science.gov (United States)

    Li, Xue; Ning, Xianhui; Dou, Jinzhuang; Yu, Qian; Wang, Shuyue; Zhang, Lingling; Wang, Shi; Hu, Xiaoli; Bao, Zhenmin

    2015-06-10

    Carotenoids are a diverse group of red, orange, and yellow pigments that act as vitamin A precursors and antioxidants. Animals can only obtain carotenoids through their diets. Amongst the carotenoids identified in nature, over one third are of marine origin, but current research on carotenoid absorption in marine species is limited. Bivalves possess an adductor muscle, which is normally white in scallops. However, a new variety of Yesso scallop (Patinopecten yessoensis), the 'Haida golden scallop', can be distinguished by its adductor muscle's orange colour, which is caused by carotenoid accumulation. Studying the genes related to carotenoid accumulation in this scallop could benefit our understanding of the mechanisms underlying carotenoid absorption in marine organisms, and it could further improve scallop breeding for carotenoid content. Stearoyl-CoA desaturase (SCD) is the rate-limiting enzyme in the production of monounsaturated fatty acids, which enhance carotenoid absorption. Here, the full-length cDNA and genomic DNA sequences of the SCD gene from the Yesso scallop (PySCD) were obtained. The PySCD gene consisted of four exons and three introns, and it contained a 990-bp open reading frame encoding 329 amino acids. It was ubiquitously expressed in adult tissues, embryos and larvae of both white Yesso scallops and 'Haida golden' scallops. Although the expression pattern of PySCD in both types of scallops was similar, significantly more PySCD transcripts were detected in the 'Haida golden' scallops than in the white scallops. Elevated PySCD expression was found in tissues including the adductor muscle, digestive gland, and gonad, as well as in veliger larvae. This study represents the first characterisation of an SCD gene from the Mollusca. Our data imply that PySCD functions in multiple biological processes, and it might be involved in carotenoid accumulation.

  10. 76 FR 23794 - Stock Status Determination for Atlantic Highly Migratory Scalloped Hammerhead Shark

    Science.gov (United States)

    2011-04-28

    ... Scalloped Hammerhead Shark AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... an Atlantic highly migratory species (HMS) scalloped hammerhead shark, and the stock is overfished... sharks in U.S. waters. Based on this paper, in 2005, the population was estimated to be at 45 percent...

  11. A scallop IGF binding protein gene: molecular characterization and association of variants with growth traits.

    Directory of Open Access Journals (Sweden)

    Liying Feng

    Full Text Available BACKGROUND: Scallops represent economically important aquaculture shellfish. The identification of genes and genetic variants related to scallop growth could benefit high-yielding scallop breeding. The insulin-like growth factor (IGF system is essential for growth and development, with IGF binding proteins (IGFBPs serving as the major regulators of IGF actions. Although an effect of IGF on growth was detected in bivalve, IGFBP has not been reported, and members of the IGF system have not been characterized in scallop. RESULTS: We cloned and characterized an IGFBP (PyIGFBP gene from the aquaculture bivalve species, Yesso scallop (Patinopecten yessoensis, Jay, 1857. Its full-length cDNA sequence was 1,445 bp, with an open reading frame of 378 bp, encoding 125 amino acids, and its genomic sequence was 10,193 bp, consisting of three exons and two introns. The amino acid sequence exhibited the characteristics of IGFBPs, including multiple cysteine residues and relatively conserved motifs in the N-terminal and C-terminal domains. Expression analysis indicated that PyIGFBP was expressed in all the tissues and developmental stages examined, with a significantly higher level in the mantle than in other tissues and a significantly higher level in gastrulae and trochophore larvae than in other stages. Furthermore, three single nucleotide polymorphisms (SNPs were identified in this gene. SNP c.1054A>G was significantly associated with both shell and soft body traits in two populations, with the highest trait values in GG type scallops and lowest in AG type ones. CONCLUSION: We cloned and characterized an IGFBP gene in a bivalve, and this report also represents the first characterizing an IGF system gene in scallops. A SNP associated with scallop growth for both the shell and soft body was identified in this gene. In addition to providing a candidate marker for scallop breeding, our results also suggest the role of PyIGFBP in scallop growth.

  12. Meat Composition and Quality Assessment of King Scallops (Pecten maximus and Frozen Atlantic Sea Scallops (Placopecten magellanicus on a Retail Level

    Directory of Open Access Journals (Sweden)

    Monika Manthey-Karl

    2015-09-01

    Full Text Available An enlarged range of scallop products on the market allows the consumer to buy lower priced alternatives, which often raises the question of quality and control. Frozen meat of king scallops (Pecten maximus and Atlantic sea scallops (Placopecten magellanicus were purchased on the German market and compared with fresh shell-on king scallops of various origin. The approximate composition, inclusive citric acid and phosphates, minerals, free amino acids (FAA and fatty acid profiles were examined in the muscle to identify changes as a result of processing. The FAA glycine and taurine as well the fatty acids 20:5n-3 (EPA and 22:6n-3 (DHA were the most abundant, but were reduced in processed samples. Di- and triphosphate contents were not detectable (<0.01 g·kg−1 in untreated meats. Most frozen scallop products contained added citrates and polyphosphates and had distinctly higher water contents (up to 89% and an increased moisture to protein ratio (M/P (up to 9 compared with the fresh king scallops (78%, M/P < 5. Labelling of species, verified by PCR-based DNA analysis, and ingredients were not correct in each case. Overall results indicated no relevant differences in mineral content, except high sodium contents, resulting from additives. Labelling does not readily allow the consumer to recognize the extent of processing effects.

  13. Electroreception in juvenile scalloped hammerhead and sandbar sharks.

    Science.gov (United States)

    Kajiura, Stephen M; Holland, Kim N

    2002-12-01

    The unique head morphology of sphyrnid sharks might have evolved to enhance electrosensory capabilities. The 'enhanced electroreception' hypothesis was tested by comparing the behavioral responses of similarly sized carcharhinid and sphyrnid sharks to prey-simulating electric stimuli. Juvenile scalloped hammerhead sharks Sphyrna lewini and sandbar sharks Carcharhinus plumbeus oriented to dipole electric fields from the same maximum distance (approximately 30 cm) and thus demonstrated comparable behavioral-response thresholds (<1 nV cm(-1)). Despite the similarity of response threshold, the orientation pathways and behaviors differed for the two species. Scalloped hammerheads typically demonstrated a pivot orientation in which the edge of the cephalofoil closest to the dipole remained stationary while the shark bent its trunk to orient to the center of the dipole. By contrast, sandbars swam in a broader arc towards the center of the dipole. The different orientation patterns are attributed to the hydrodynamic properties of the cephalofoil, which enables the hammerheads to execute sharp turns at high speed. The greater trunk width of the sandbar sharks prevented them from demonstrating the same degree of flexibility. Therefore, although the sphyrnid head morphology does not appear to confer a greater sensitivity to prey-simulating dipole electric fields, it does provide (1). a greater lateral search area, which may increase the probability of prey encounter, and (2). enhanced maneuverability, which may aid in prey capture.

  14. The factors affecting meat condition and growth rate of Farreris scallop C hlamys (Azumapecten) farreri in Sishiliwan Bay,Yantai%烟台四十里湾养殖海区影响栉孔扇贝肥满度和生长因素的研究

    Institute of Scientific and Technical Information of China (English)

    张涛; 杨红生; 王萍; 何义朝; 张福绥

    2001-01-01

    1997年6月~1998年5月用现场方法测定了烟台四十里湾海区栉孔扇贝Chlamys(Azumapecten)farreri肥满度和生长率与TPM(总颗粒物质)和POM(颗粒有机物)现存量、饵料质量(POM/TPM,Q)、栉孔扇贝同化率(AE)和同化量(AR)的关系。结果表明:(1)TPM对软体部干重的瞬时生长率IGR-并没有影响,而对于干贝指数IA、干内脏指数IV以及壳高的瞬时生长率IGR1却有明显的影响,其中,IA和IV与TPM呈正相关关系,回归方程分别为IA=5.2149(TPM)0.2478,IV=5.262(TPM)0.4405,而IGR1与TPM呈负相关关系,回归方程分别为IGR1=6.0756(TPM)-2.436;(2)POM对于栉孔扇贝所有的肥满度指标和瞬时生长率指标均有明显的影响,并且都呈正相关关系,回归方程分别为IA=6.1278(POM)0.2749,IV=7.1837(POM)0.6086,IGR1=0.1160(POM)1.8586,IGR2=0.1708(POM)2.4994;(3)Q对IV没有明显的影响,而对于IA以及所有瞬时生长率指标都有明显的影响,回归方程分别为IA=8.2881(Q)0.3211,IGR1=1.8428(Q)1.7807,IGR2=6.4216(Q)2.0404;(4)AE只对IA和IGR1有显著影响,回归方程分别为IA=20.7280(AE)-0.3137,IGR1=0.0068(AE)1.1193,AE对于IV和IGR2并没有明显影响;(5)AR对于栉孔扇贝的肥满度和瞬时生长率指标都有显著影响,并且都呈正相关关系,回归方程分别为IA=7.0289(AR)0.2052,IV=9.1800(AR)0.2868,IGR1=0.5357(AR)1.0351,IGR2=1.5236(AR)1.0386。%During June 1997 ~May 1998, we determined the relationshipsbbiomass, food quality (POM/TPM, Q) , absorption efficiency (AE) and absorption rate (AR) of C.(A) farr eri in Sishiliwan Bay, Yantai, by in situ method. The results show that: (1 ) TPM affects IA, IV and IGR1 significantly, but not affect IGR2 , the regression formula is IA=5.214 9(TPM)0.247 8,IV=5.26 2(TPM)0.4405, IGR1=6.075 6(TPM)-2.436, respectively; (2) All of indexes of meat condition and instant growth rate are affected by POM, the regression formula is IA=6.127 8(POM)0.274 9

  15. High frequency Barium profiles in shells of the Great Scallop Pecten maximus: a methodical long-term and multi-site survey in Western Europe

    Directory of Open Access Journals (Sweden)

    T. M. Church

    2008-09-01

    Full Text Available Skeletal barium/calcium ([Ba]/[Ca]shell ratios were measured every third daily striae in 39 flat valves of the Great Scallop Pecten maximus (2-year old; 3 shells/year collected in temperate coastal environments of Western Europe. Variations of ([Ba]/[Ca]shell ratio were first demonstrated reproducible for several scallop individuals from the same population, over a 7-year period (1998–2004, and from different coastal environments in France (42–49° N. As in previous studies, ([Ba]/[Ca]shell profiles exhibited a background ratio punctuated by transient maxima occurring in summer. Background partition coefficient (DBa=0.11±0.03, in 2000 was similar to that previously reported in P. maximus shells (DBa=0.18, suggesting a direct shell uptake of dissolved seawater Ba (Gillikin et al., 2008. Special attention was then dedicated to the complete monitoring of high resolution ([Ba]/[Ca]shell profiles in bivalve shells (7 years, Bay of Brest to better constrain environmental processes influencing both the occurrence and the amplitude of summer peaks. In 2000, seawater Ba analyses underlined significant particulate Ba inputs at the seawater interface (SWI during ([Ba]/[Ca]shell peak events. These Ba inputs are suggested to be subsequent to and rather induced by a pelagic biogenic process. The long term survey revealed first that archived Ba within the shell cannot be used as a direct paleo productivity tracer, and second that complex pelagic/benthic processes in the Ba cycle are responsible of particulate Ba inputs to the SWI, subsequently taken up by the bivalve and recorded as higher ([Ba]/[Ca]shell ratios. When these processes will be better constrained, high frequency observations of Ba in scallop shells would provide new insights into filter feeding dynamics and into Ba biogeochemistry in coastal environments.

  16. 蒸汽式扇贝开壳装置工作参数优化%Optimization of operating parameters on steam-shelling device for scallop

    Institute of Scientific and Technical Information of China (English)

    弋景刚; 吴红雷; 姜海勇; 张静; 徐鹏云

    2014-01-01

    Scallops are the backbone variety in the development of the aquaculture industry in China, which plays an important role in the domestic fishery economic activities. Shellfish are nutritious, delicious, and have many healthcare functions, so they have much important edibleness and economic value. However, the ability to develop processing machinery and equipments for aquatic products is relatively weak, and the scallops shelling work is usually done by hand, which leads to great labor intensity, low production efficiency, bad sanitary condition, and easy bacterial pollution, affecting the taste and quality of the product. In order to improve the quality of the deep processing of scallops, a steam scallop shelling device needs to be developed. When steam is injected into the surface of the scallop, the ardent fever of the steam makes the adductor muscle (the joint of shell and carina) retrenched in an especially short moment and separates from the shell to make the ligament stretch and the shell open. In order to obtain the optimum matching of steam parameters of the device, this paper takes Qingdao bay scallop as the experimental material, breeding age at 5 months, sea area at the Yellow Sea, and fishing time as 48 hours. Shelling effect of sensory scores was assessed based on the 3 observation indexes of organization state, shell opening and the slotting degree by different groups with 8 persons as a group. Twenty bay scallops were assessed under each parameter. First, regard the shelling effect of sensory scores as the target to conduct a single factor experiment. When the intensity of pressure of steam is controlled in the range of 0.3-0.4 MPa, temperature controlled in the range of 142.92-151.11℃, and 6mm ball valves, the three best parameters optimal ranges of steam injection time A, steam injection distance B, and steam displacement C are determined: spraying time A takes 2-4 s, injection distance B takes 30-50 mm, and valve opening of steam displacement C

  17. Population Dynamics and Parasite Load of a Foraminifer on Its Antarctic Scallop Host with Their Carbonate Biomass Contributions.

    Directory of Open Access Journals (Sweden)

    Leanne G Hancock

    Full Text Available We studied the population dynamics and parasite load of the foraminifer Cibicides antarcticus on its host the Antarctic scallop Adamussium colbecki from three localities differing by sea ice cover within western McMurdo Sound, Ross Sea, Antarctica: Explorers Cove, Bay of Sails and Herbertson Glacier. We also estimated CaCO3 biomass and annual production for both species. Cibicides populations varied by locality, valve type, and depth. Explorers Cove with multiannual sea ice had larger populations than the two annual sea ice localities, likely related to differences in nutrients. Populations were higher on Adamussium top valves, a surface that is elevated above the sediment. Depth did not affect Cibicides distributions except at Bay of Sails. Cibicides parasite load (the number of complete boreholes in Adamussium valves varied by locality between 2% and 50%. For most localities the parasite load was < 20%, contrary to a previous report that ~50% of Cibicides were parasitic. The highest and lowest parasite load occurred at annual sea ice localities, suggesting that sea ice condition is not important. Rather, the number of adults that are parasitic could account for these differences. Cibicides bioerosion traces were categorized into four ontogenetic stages, ranging from newly attached recruits to parasitic adults. These traces provide an excellent proxy for population structure, revealing that Explorers Cove had a younger population than Bay of Sails. Both species are important producers of CaCO3. Cibicides CaCO3 biomass averaged 47-73 kg ha(-1 and Adamussium averaged 4987-6806 kg ha(-1 by locality. Annual production rates were much higher. Moreover, Cibicides represents 1.0-2.3% of the total host-parasite CaCO3 biomass. Despite living in the coldest waters on Earth, these species can contribute a substantial amount of CaCO3 to the Ross Sea and need to be incorporated into food webs, ecosystem models, and carbonate budgets for Antarctica.

  18. Is an Apicomplexan Parasite Responsible for the Collapse of the Iceland Scallop (Chlamys islandica) Stock?

    Science.gov (United States)

    Kristmundsson, Árni; Erlingsdóttir, Ásthildur; Freeman, Mark A

    2015-01-01

    Due to the total and unexpected collapse of the Iceland scallop, Chlamys islandica, stocks around Iceland during the 2000s, a commercial fishing ban has been imposed on this valuable resource since 2003. Following the initial identification of an apicomplexan parasite in the scallops, a long-term surveillance program was established to evaluate the effect of the parasite on the population. The infections were highly prevalent in all shell sizes throughout the study. However, the parasite only impacts mature scallops where they cause severe macroscopic changes, characterized by an extensively diminished and abnormally coloured adductor muscle. A highly significant relationship was observed between infection intensity and gonad and adductor muscle indices. The first four years of the study, were characterized by high infection intensity and very poor condition of the adductor muscle and gonads, whilst during subsequent years, infections gradually decreased and the condition of the scallops improved. Histopathological changes were restricted to the presence of apicomplexan zoites which were widely distributed, causing varying degrees of pathology in all organs. In heavy infections, muscular and connective tissues were totally necrotized, destroying significant parts of numerous organs, especially the adductor muscle, digestive gland and gonads. The progression of the disease was in good synchrony with the mortality rates and the subsequent decline observed in the scallop stock and recruitment indices. Our findings strongly suggest that the apicomplexan parasite played a major role in the collapse of the Iceland scallop stock in Breidafjordur. In addition to causing mortality, the infections significantly impact gonad development which contributes further to the collapse of the stock in the form of lower larval recruitment. Furthermore, compelling evidence exists that this apicomplexan pathogen is causing serious disease outbreaks in other scallop populations. Similar

  19. Habitat characteristics predicting distribution and abundance patterns of scallops in D'Entrecasteaux Channel, Tasmania.

    Science.gov (United States)

    Mendo, Tania; Lyle, Jeremy M; Moltschaniwskyj, Natalie A; Tracey, Sean R; Semmens, Jayson M

    2014-01-01

    Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D'Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S), a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial management and habitat

  20. Habitat characteristics predicting distribution and abundance patterns of scallops in D'Entrecasteaux Channel, Tasmania.

    Directory of Open Access Journals (Sweden)

    Tania Mendo

    Full Text Available Habitat characteristics greatly influence the patterns of distribution and abundance in scallops, providing structure for the settlement of spat and influencing predation risk and rates of survival. Establishing scallop-habitat relationships is relevant to understanding the ecological processes that regulate scallop populations and to managing critical habitats. This information is particularly relevant for the D'Entrecasteaux Channel, south-eastern Tasmania (147.335 W, 43.220 S, a region that has supported significant but highly variable scallop production over many years, including protracted periods of stock collapse. Three species of scallops are present in the region; the commercial scallop Pecten fumatus, the queen scallop Equichlamys bifrons, and the doughboy scallop Mimachlamys asperrima. We used dive surveys and Generalized Additive Modelling to examine the relationship between the distribution and abundance patterns of each species and associated habitat characteristics. The aggregated distribution of each species could be predicted as a function of sediment type and species-specific habitat structural components. While P. fumatus was strongly associated with finer sediments and E. bifrons with coarse grain sediments, M. asperrima had a less selective association, possibly related to its ability to attach on a wide range of substrates. Other habitat characteristics explaining P. fumatus abundance were depth, Asterias amurensis abundance, shell and macroalgae cover. Equichlamys bifrons was strongly associated with macroalgae and seagrass cover, whereas M. asperrima abundance was greatly explained by sponge cover. The models define a set of relationships from which plausible hypotheses can be developed. We propose that these relationships are mediated by predation pressure as well as the specific behavioural characteristics of each species. The findings also highlight the specific habitat characteristics that are relevant for spatial

  1. High frequency Barium profiles in shells of the Great Scallop Pecten maximus: a methodical long-term and multi-site survey in Western Europe

    Directory of Open Access Journals (Sweden)

    T. M. Church

    2009-02-01

    Full Text Available Skeletal barium/calcium ([Ba]/[Ca]shell ratios were measured every third daily striae in 39 flat valves of the Great Scallop Pecten maximus collected in temperate coastal environments of Western Europe. A methodical evaluation of the ([Ba]/[Ca]shell ratio was performed for the first time and demonstrates that ([Ba]/[Ca]shell profiles are reproducible for several scallop individuals from the same population (2-year old; 3 shells/year, over a 7-year period (1998–2004, and from different coastal environments in France (42–49° N. As previously determined in the shells of other bivalve species, ([Ba]/[Ca]shell profiles generally exhibited a background ratio punctuated by two transient maxima occurring in early and late summer. Background partition coefficient (DBa=0.11±0.03, in 2000 was similar to that previously reported in P. maximus shells, suggesting a direct shell uptake of dissolved seawater Ba (Gillikin et al., 2008. The 7-year survey in the Bay of Brest of the high frequency ([Ba]/[Ca]shell profiles in the scallop's shell was exploited to better constrain both the occurrence and the amplitude of the summer Ba relative enrichments as influenced by environmental processes. Seawater Ba contents in 2000 underlined significant particulate Ba inputs at the sediment water interface (SWI during ([Ba]/[Ca]shell peak events. These Ba inputs are thus suggested to be subsequently induced by a pelagic biogenic process, which mainly occurs under summer post-bloom conditions in relationship to the cycling of particulate organic matter and associated Ba. The long term survey reveals that such pelagic Ba cycling processes are responsible for particulate Ba inputs to the sediment water interface (SWI. Subsequent indirect Ba uptake by the bivalve results in higher ([Ba]/[Ca]shell ratios, in that archived Ba within the shell cannot be used as a direct paleo productivity tracer. Our methodical approach, based on a multi-year and multi-site-survey of ([Ba

  2. Biological control of fouling incrustation on the scallop Nodipecten nodosus (Linnaeus, 1758 cultured in Ubatuba, SP, Brazil

    Directory of Open Access Journals (Sweden)

    Rogerio Stojanov Bueno

    2009-12-01

    Full Text Available This experiment was developed at the marine farm of the São Paulo State Fisheries Institute in Ubatuba, SP, Brazil, aiming to compare the efficiency of three organisms (the sea urchins Echinometra lucunter, Lytechinus variegatus and the gastropod Tegula viridula in controlling fouling incrustation in lantern net and on Nodipecten nodosus valves. Scallops measuring 32.6 + 4.9mm of initial height were cultivated in eight Japanese lanterns with five floors each, at a density of 25 scallops/floor, according to the following delineament: T1 – control (scallops alone; T2 – scallops with E. lucunter; T3 – scallops with L. variegatus; T4 – scallops with T. viridula. Densities of the bio-controllers were: four (E. lucunter, three (L. variegatus and 15 animals/floor (T. viridula. The experiment was finished 150 days later and the remaining fouling in the lanterns and on the scallops valves was removed and weighed (dry weights. The sea-urchin species E. lucunter and L. variegatus were significantly more efficient in removing the lantern fouling (86% and 59% relative to the control treatment respectively, but there were no significant differences among the biocontrollers in controlling the fouling on the scallop valves. These results suggest that biological control can be helpful as an auxiliary method in scallop culture fouling removal.

  3. Stock enhancement or sea ranching? Insights from monitoring the genetic diversity, relatedness and effective population size in a seeded great scallop population (Pecten maximus).

    Science.gov (United States)

    Morvezen, R; Boudry, P; Laroche, J; Charrier, G

    2016-09-01

    The mass release of hatchery-propagated stocks raises numerous questions concerning its efficiency in terms of local recruitment and effect on the genetic diversity of wild populations. A seeding program, consisting of mass release of hatchery-produced juveniles in the local naturally occurring population of great scallops (Pecten maximus L.), was initiated in the early 1980s in the Bay of Brest (France). The present study aims at evaluating whether this seeding program leads to actual population enhancement, with detectable effects on genetic diversity and effective population size, or consists of sea ranching with limited genetic consequences on the wild stock. To address this question, microsatellite-based genetic monitoring of three hatchery-born and naturally recruited populations was conducted over a 5-year period. Results showed a limited reduction in allelic richness but a strong alteration of allelic frequencies in hatchery populations, while genetic diversity appeared very stable over time in the wild populations. A temporal increase in relatedness was observed in both cultured stock and wild populations. Effective population size (Ne) estimates were low and variable in the wild population. Moreover, the application of the Ryman-Laikre model suggested a high contribution of hatchery-born scallops to the reproductive output of the wild population. Overall, the data suggest that the main objective of the seeding program, which is stock enhancement, is fulfilled. Moreover, gene flow from surrounding populations and/or the reproductive input of undetected sub-populations within the bay may buffer the Ryman-Laikre effect and ensure the retention of the local genetic variability.

  4. 桑沟湾养殖容量与优化措施的研究%Carrying capacity and optimizing measures for mariculture in Sungo Bay

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The carrying capacity of Sungo Bay for the culture of scallop Chlamys farreri was estimated by calculating the supply and demand of organic carbon produced by primary production.The carrying capacity for the large scallops (5~6 cm shell height) is about 35 ind./m2,which is 15 ind./m2 lower than the actual cultivating density.By calculating the total supply and demand of inorganic nutrient,the carrying capacity of the bay for kelp Laminaria japanica was estimated for the first time in the world.Based on the results from assessment of carrying capacity,some optimizing measures such as polyculture of bivalves and kelp,controlling fouling organisms,adjusting the size of longline block,enlarging the navigation channel and so on were proposed and practiced in the bay.

  5. Production of scallop shell nanoparticles by mechanical grinding as a formaldehyde adsorbent

    Energy Technology Data Exchange (ETDEWEB)

    Yamanaka, Shinya, E-mail: syama@mmm.muroran-it.ac.jp [Muroran Institute of Technology, College of Environmental Technology (Japan); Suzuma, Akifumi [Muroran Institute of Technology, Division of Applied Sciences (Japan); Fujimoto, Toshiyuki; Kuga, Yoshikazu [Muroran Institute of Technology, College of Environmental Technology (Japan)

    2013-04-15

    Scallop shells, which are a waste product in the seafood industry, are disposed more than 200,000 ton per year in Hokkaido, Japan. We report effective uses and simple application for discarded shells as a formaldehyde adsorbent. The adsorption performance of scallop shells to remove formaldehyde vapor is investigated. Planetary ball milling under dry conditions and subsequent water addition realize shells with a crystallite size (35-90 nm) and equivalent size of the specific surface area (41-191 nm) in the nanometer range. The comminution properties of the scallop shells, especially the grinding limit, are estimated via a semi-theoretical consideration for the grinding limit. Additionally, the adsorbed amount of gaseous formaldehyde using a self-designed adsorption line is estimated. The nanosized scallop shells exhibit an excellent adsorption performance rather than the feed shell, and the adsorbed amount is positively correlated with the specific surface area of the shell. Hence, scallop shells have potential to adsorb volatile organic compounds.

  6. Insular dentin formation pattern in human odontogenesis in relation to the scalloped dentino-enamel junction.

    Science.gov (United States)

    Radlanski, Ralf J; Renz, Herbert

    2007-01-01

    This study is a first report on the modality of early dentin formation in respect to the scalloped pattern of the dentino-enamel junction (DEJ). We applied scanning electron microscopy (SEM), transmission electron microscopy (TEM), histological serial sections, and three-dimensional (3D) reconstructions. TEM and SEM showed scallops and secondary scallops on the DEJ of deciduous dental primordia and on deciduous teeth with the enamel cap removed. This peculiar outline of the DEJ requires a specific dentin formation pattern; histological sections showed that dentin formation began at the brims of the scallops, seen as triangular spikes in serial sections. The dentin formation front was not uniform; instead, it was characterized by multiple, insular forming centers, as revealed by our 3D reconstructions. As thicker dentin layers formed, the islands became confluent. Factors are discussed, which may lead to crimpling of the inner enamel epithelium, and maintained as the scalloped pattern of the DEJ develops. Signaling patterns in accordance with the insular dentin formation are unknown so far.

  7. Tetraploid induction by inhibiting mitosis I in scallop Chlamys farreri

    Science.gov (United States)

    Yang, Hui-Ping; Guo, Xi-Ming; Chen, Zai-Zhong; Wang, Yong-Ping

    1999-12-01

    Tetraploid induction was carried out by inhibiting mitosis I in fertilized eggs of Chlamys farreri. Mitosis I was blocked with cold shock (5 7°C), Cytochalasin B (0.75 mg/L) and 6-dimethylaminopurine (6-DMAP) (60 75 mg/L) when 60% fertilized eggs released polar body II at 20°C. At 4-cells embryo stage, the ploidy was determined by counting chromosome number. In control groups, most embryos were diploids (72.22%) and aneuploids (24.78%). In Cytochalasin B, cold shock and 6-DMAP treated groups, tetraploids were respectively 10.51%, 4.08%, and 13.34%; aneuploids were 43.10%, 35.93% and 29.16%, and triploids were 7.84%, 8.52% and 18.33%. At D-larva stage, ploidy was determined by flow cytometry (FCM). The ploidy analysis of day 2 larvae showed diploids in control group and also in three treated groups. Juvenile scallops (0.2 0.3cm) which were harvested in two control groups and two CB treated groups were all diploids through checking ploidy individually by FCM.

  8. The activity of the Drosophila Vestigial protein is modified by Scalloped-dependent phosphorylation.

    Science.gov (United States)

    Pimmett, Virginia L; Deng, Hua; Haskins, Julie A; Mercier, Rebecca J; LaPointe, Paul; Simmonds, Andrew J

    2017-05-01

    The Drosophila vestigial gene is required for proliferation and differentiation of the adult wing and for differentiation of larval and adult muscle identity. Vestigial is part of a multi-protein transcription factor complex, which includes Scalloped, a TEAD-class DNA binding protein. Binding Scalloped is necessary for translocation of Vestigial into the nucleus. We show that Vestigial is extensively post-translationally modified and at least one of these modifications is required for proper function during development. We have shown that there is p38-dependent phosphorylation of Serine 215 in the carboxyl-terminal region of Vestigial. Phosphorylation of Serine 215 occurs in the nucleus and requires the presence of Scalloped. Comparison of a phosphomimetic and non-phosphorylatable mutant forms of Vestigial shows differences in the ability to rescue the wing and muscle phenotypes associated with a null vestigial allele. Copyright © 2017 Elsevier Inc. All rights reserved.

  9. A rigorous proof of the scallop theorem and a finite mass effect of a microswimmer

    CERN Document Server

    Ishimoto, Kenta

    2011-01-01

    We reconsider fluid dynamics for a self-propulsive swimmer in Stokes flow. With an exact definition of deformation of a swimmer, a proof is given to Purcell's scallop theorem including the body rotation. The breakdown of the theorem due to a finite Stokes number is discussed by using a perturbation expansion method and it is found that the breakdown generally occurs at the first order of the Stokes number. In addition, employing the Purcell's "scallop" model, we show that the theorem holds up to a higher order if the strokes of the swimmer has some symmetry.

  10. A new iso-scallop height tool path planning method in three-dimensional space

    Institute of Scientific and Technical Information of China (English)

    MIN Cheng

    2012-01-01

    This paper presents a new approach for designing the tool paths in the machining of sculptured surfaces for computer nu- merical controlled end milling. In the proposed method, the tool paths are determined so that the scallop height formed by two adja- cent machining paths is maintained constant across the machined surface. Unlike previous work on iso-scallop height milling, the present work considers the true 3D configuration of the milling procedure and can be used to generate better results, which is shown by examoles.

  11. 海湾扇贝(Argopecten irradians)附着基异养细菌区系初探%Study on Microflora of the Biofilm on the Adhesive Substrate of Larva

    Institute of Scientific and Technical Information of China (English)

    李筠; 生菊; 纪伟尚; 徐怀恕

    2001-01-01

    从海湾扇贝附着基上分离出61株异养细菌,对其进行80项生理生化特征测定,以数值分类法进行分析。鉴定结果表明,海湾扇贝附着基上异养菌属于假单胞菌(Pseudomonas)、气单胞菌(Aeromonas)、弧菌(Vibrio)、芽孢杆菌(Bacillus)和产碱杆菌(Alcaligenes)。扇贝幼虫附着前附着的细菌主要为芽孢杆菌与假单胞菌,扇贝幼虫附着后气单胞菌成为优势,弧菌数量明显增加,与假单胞菌数量相当。%The heterotrophic bacteria flora on the adhe sive substrate ofArgopecten irradians was studied. Sixty-one strains of he terotrophic bacteria were isolated from Argopecten irradians attaching subst rate. They were identified by 80 characteristics and clustered by numerical taxo nomy. The isolates were clustered to Pseudomonas, Aeromonas, Vibrio, Bacillus and Alcaligenes. The dominant taxa on the Argopecten irradians attaching substrate were Bacillus and Pseudomonas before larvae adhesion and then were Aeromonas after adhesion instead. Aeromonas and Vibrio beca me the second dominant.

  12. 76 FR 61996 - Fishery Management Plan for the Scallop Fishery Off Alaska; Amendment 13

    Science.gov (United States)

    2011-10-06

    ...) and accountability measures (AMs) to prevent overfishing in the target fishery for weathervane... absence of a statewide estimate of spawning biomass for weathervane scallops, the overfishing level (OFL... the Magnuson-Stevens Act relative to preventing overfishing and establishing an ABC and ACL....

  13. 77 FR 73957 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Closure of the...

    Science.gov (United States)

    2012-12-12

    ... area rotation program, the heavy fishing effort decreased scallop biomass significantly. Framework... Team (PDT) meeting on August 19 and 20, 2012, staff from the NMFS Northeast Fisheries Science Center... (which represents future recruitment for the fishery) in the ETA is extremely high compared to recent...

  14. The Scallop's Eye--A Concave Mirror in the Context of Biology

    Science.gov (United States)

    Colicchia, Giuseppe; Waltner, Christine; Hopf, Martin; Wiesner, Hartmut

    2009-01-01

    Teaching physics in the context of medicine or biology is a way to generate students' interest in physics. A more uncommon type of eye, the scallop's eye (an eye with a spherical concave mirror, which is similar to a Newtonian or Schmidt telescope) and the image-forming mechanism in this eye are described. Also, a simple eye model, which can…

  15. 76 FR 31491 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Closure of the...

    Science.gov (United States)

    2011-06-01

    ... information. NMFS will accept anonymous comments (enter N/A in the required fields, if you wish to remain..., including the closure of the NLS, which is scheduled to open on June 15, 2011, and allocating trips into..., 2011. FY 2011 began on March 1, 2011, and FY 2010 scallop fishery regulations remain in effect...

  16. 77 FR 20728 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Framework Adjustment 23

    Science.gov (United States)

    2012-04-06

    ... measure that changes the current VMS trip declaration requirement for scallop vessels only, allowing them... designated port. Under current regulations, vessels that are involved in VMS fisheries (e.g., vessels with... requirement applies. It also revises the current accountability measures (AMs) related to the yellowtail...

  17. 77 FR 52 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery; Framework Adjustment 23

    Science.gov (United States)

    2012-01-03

    ... Notifications for Scallop Vessels This action proposes a measure that would change the current VMS trip... of the VMS Demarcation Line, rather than from a designated port. Under current regulations, vessels... to which vessels this TDD requirement would apply. Framework 23 proposes to revise the current...

  18. Co-evolution of polygonal and scalloped terrains, southwestern Utopia Planitia, Mars

    Science.gov (United States)

    Haltigin, T. W.; Pollard, W. H.; Dutilleul, P.; Osinski, G. R.; Koponen, L.

    2014-02-01

    Thermal contraction crack polygons and scalloped depressions, two of the most common landforms found in Utopia Planitia, Mars, have previously been linked to the presence of ice-rich deposits in the subsurface. Although the formation and evolution of these features individually are relatively well understood, little to no effort has been directed towards elucidating possible interactions that occur between them during their development. Thus, the overarching goal of this research was to investigate if there is an evolutionary link between polygonal and scalloped terrains by correlating metrics representing polygon and scallop maturity. A variety of statistical analyses were performed using HiRISE and MOLA datasets to quantify interactions between four sets of polygonal and scalloped terrains. Our results demonstrate the existence of a negative relationship between polygonal subdivision and surface elevation, indicating that polygon networks become more ‘evolved’ as the surface subsides. These results suggest that the permafrost landscape in Utopia Planitia may once have been extremely ice-rich, and that multiple geomorphic processes may be responsible for its evolution. Ultimately, this work demonstrates that landscape reconstruction is more complete when a system approach is followed, quantifying interactions between landforms as opposed to examining an individual landform in isolation.

  19. Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (North Atlantic). Sea Scallop.

    Science.gov (United States)

    1986-08-01

    caused by coastal development.ELch profile has sections on taxonomy , life history, ecological role, environmental requirments, and economic importance...NOMENCLATURE/ TAXONOMY /RANGE ............. 1 NORPHOLOGY/IDENTIFICATION AIDS . . . . . . . . . . . 3Adult . . &. . . . . . s . . . . . . . . 3 Juvenile...smooth scallop, / mark and, on occasion, inter- Phylum ................... . Mollusca - tidally along the coast of Maine Class .......... ..... Rivalvia

  20. Crecimiento y estructura demográfica de Argopecten purpuratus en la Reserva Marina La Rinconada, Antofagasta, Chile

    Directory of Open Access Journals (Sweden)

    2005-01-01

    Full Text Available Se presentan los parámetros de crecimiento L∞ = 120.38 mm y K = 0.9668 para el banco de Argopecten purpuratus de la Reserva Marina La Rinconada (Antofagasta, Chile, obtenidos entre marzo de 2001 y mayo de 2003 usando métodos de marcaje y recaptura de ejemplares. La elevada recaptura de individuos marcados (60–80% indica baja mortalidad natural y una conducta sedentaria del recurso. Las evaluaciones anuales realizadas para estimar el tamaño del banco confirmaron tal conducta, encontrándose la mayoría de los individuos agregados en el centro, con densidades que variaron entre años de 9 a 14.8 ind m–2. La abundancia de ejemplares también mostró variabilidad interanual, con cifras de 10.1 × 106 en 2001, 8.2 × 106 en 2002 y 12.4 × 106 en 2003. Estas evaluaciones mostraron, además, una disminución en la talla media de la estructura demográfica del banco entre un año y otro, reduciéndose de 75.8 mm en 2001 a 62.1 mm en 2002 y a 51.7 mm en 2003. Esta disminución también ocurrió con el número de ejemplares mayores o iguales a la talla mínima legal (90 mm, reduciéndose de 2.6 × 106 ejemplares presentes en 2001 a 3.7 × 105 ejemplares en 2003. La aplicación de los parámetros de crecimiento sobre la estructura poblacional del banco entre 2002 y 2003 señaló la integración de una nueva clase anual de 6.5 × 106 de ejemplares en 2002 y de 11.2 × 106 de individuos en 2003. El descuento de estas cifras, del número total de ejemplares presentes en ambos años, demuestra una pérdida cercana a los 8.4 × 106 de ostiones en 2002 y de cerca de 7.0 × 106 de individuos en 2003. Estas pérdidas correspondieron a ejemplares con tallas superiores a los 60 mm, lo cual es corroborado con el análisis de la curva de captura realizado con el programa Fisat, cuyos resultados señalan una mortalidad Z = 2.15 en 2002 para el segmento de la población entre 67.5 y 115.5 mm, y Z = 3.08 en 2003 para el segmento de 64.3 a 112.5 mm. Los

  1. The immunomodulation of acetylcholinesterase in zhikong scallop Chlamys farreri.

    Directory of Open Access Journals (Sweden)

    Xiaowei Shi

    Full Text Available BACKGROUND: Acetycholinesterase (AChE; EC 3.1.1.7 is an essential hydrolytic enzyme in the cholinergic nervous system, which plays an important role during immunomodulation in vertebrates. Though AChEs have been identified in most invertebrates, the knowledge about immunomodulation function of AChE is still quite meagre in invertebrates. METHODOLOGY: A scallop AChE gene was identified from Chlamys farreri (designed as CfAChE, and its open reading frame encoded a polypeptide of 522 amino acids. A signal peptide, an active site triad, the choline binding site and the peripheral anionic sites (PAS were identified in CfAChE. The recombinant mature polypeptide of CfAChE (rCfAChE was expressed in Pichia pastoris GS115, and its activity was 71.3±1.3 U mg(-1 to catalyze the hydrolysis of acetylthiocholine iodide. The mRNA transcripts of CfAChE were detected in haemocytes, hepatopancreas, adductor muscle, mantle, gill, kidney and gonad, with the highest expression level in hepatopancreas. The relative expression level of CfAChE mRNA in haemocytes was both up-regulated after LPS (0.5 mg mL(-1 and human TNF-α (50 ng mL(-1 stimulations, and it reached the highest level at 12 h (10.4-fold, P<0.05 and 1 h (3.2-fold, P<0.05, respectively. After Dichlorvos (DDVP (50 mg L(-1 stimulation, the CfAChE activity in the supernatant of haemolymph decreased significantly from 0.16 U mg(-1 at 0 h to 0.03 U mg(-1 at 3 h, while the expression level of lysozyme in the haemocytes was up-regulated and reached the highest level at 6 h, which was 3.0-fold (P<0.05 of that in the blank group. CONCLUSIONS: The results collectively indicated that CfAChE had the acetylcholine-hydrolyzing activity, which was in line with the potential roles of AChE in the neuroimmune system of vertebrates which may help to re-balance the immune system after immune response.

  2. The TEAD/TEF Family Protein Scalloped Mediates Transcriptional Output of the Hippo Growth-Regulatory Pathway

    National Research Council Canada - National Science Library

    Wu, Shian; Liu, Yi; Zheng, Yonggang; Dong, Jixin; Pan, Duojia

    2008-01-01

    .... Here we identify the TEAD/TEF family protein Scalloped (Sd) as a DNA-binding transcription factor that partners with Yki to mediate the transcriptional output of the Hpo growth-regulatory pathway. The diap1 (th...

  3. Galveston Bay

    Science.gov (United States)

    Handley, Lawrence R.; Spear, Kathryn A.; Eleonor Taylor,; Thatcher, Cindy

    2011-01-01

    The Galveston Bay estuary is located on the upper Texas Gulf coast (Lester and Gonzalez, 2002). It is composed of four major sub-bays—Galveston, Trinity, East, and West Bays. It is Texas’ largest estuary on the Gulf Coast with a total area of 155,399 hectares (384,000 acres) and 1,885 km (1,171 miles) of shoreline (Burgan and Engle, 2006). The volume of the bay has increased over the past 50 years due to subsidence, dredging, and sea level rise. Outside of ship channels, the maximum depth is only 3.7 m (12 ft), with the average depth ranging from 1.2 m (4 ft) to 2.4 m (8 ft)— even shallower in areas with widespread oyster reefs (Lester and Gonzalez, 2002). The tidal range is less than 0.9 m (3 ft), but water levels and circulation are highly influenced by wind. The estuary was formed in a drowned river delta, and its bayous were once channels of the Brazos and Trinity Rivers. Today, the watersheds surrounding the Trinity and San Jacinto Rivers, along with many other smaller bayous, feed into the bay. The entire Galveston Bay watershed is 85,470 km2 (33,000 miles2 ) large (Figure 1). Galveston Island, a 5,000 year old sand bar that lies at the western edge of the bay’s opening into the Gulf of Mexico, impedes the freshwater flow of the Trinity and San Jacinto Rivers into the Gulf, the majority of which comes from the Trinity. The Bolivar Peninsula lies at the eastern edge of the bay’s opening into the Gulf. Water flows into the Gulf at Bolivar Roads, 1 U.S. Geological Survey National Wetlands Research Center, 700 Cajundome Blvd., Lafayette, LA 70506 2 Harte Research Institute for Gulf of Mexico Studies, Texas A&M University - Corpus Christi, 6300 Ocean Drive, Unit 5869, Corpus Christi, Texas 78412 2 Galveston Pass, between Galveston Island and Bolivar Peninsula, and at San Luis Pass, between the western side of Galveston Island and Follets Island.

  4. An Integrated Assessment Model for Helping the United States Sea Scallop (Placopecten magellanicus) Fishery Plan Ahead for Ocean Acidification and Warming

    OpenAIRE

    Sarah R Cooley; Rheuban, Jennie E.; Deborah R Hart; Victoria Luu; Glover, David M; Hare, Jonathan A.; Doney, Scott C.

    2015-01-01

    Ocean acidification, the progressive change in ocean chemistry caused by uptake of atmospheric CO2, is likely to affect some marine resources negatively, including shellfish. The Atlantic sea scallop (Placopecten magellanicus) supports one of the most economically important single-species commercial fisheries in the United States. Careful management appears to be the most powerful short-term factor affecting scallop populations, but in the coming decades scallops will be increasingly influenc...

  5. Formation and Evolution of Scalloped Depressions on Malea Planum and the southern rim of the Hellas Basin, Mars

    Science.gov (United States)

    Zanetti, M.; Hiesinger, H.; Reiss, D.; Neukum, G.

    2008-09-01

    Introduction: Scalloped depressions are an erosional surface morphology characterized as a type of dissected mantle terrain by Milliken and Mustard [1]. They are identified by their asymmetrical north-south profile which shows a steep pole-facing scarp, a flat floor, and a gentle equator-facing slope which grades into the surrounding terrain [1]. They are found in latitudedependent, ice-rich surface mantles in both the northern and southern hemispheres [1]. The mantle material is presumably composed of atmospherically derived dust and water ice, and is thought to be related to obliquity-driven ice activity as recently as 2.1-0.4 Myr ago [3]. Previous researchers, [e.g. 1,2,4-7] have attributed the formation of scallops to the sublimation of interstitial ice. Morgenstern et al. [6] suggested that the asymmetric profile of scallops can be explained by enhanced solar insolation on the equator-facing slope which leads to enhanced sublimation of interstial ice and thereby increases the area of the depression. By this process they can also grow and coalesce to form large degraded areas [6]. Building on our previous work [7], we investigate this hypothesis using HiRISE and THEMIS-IR images. We also propose a hypothesis for the nucleation and evolution of scallops. Previous Work: Our previous work surveyed the southern hemisphere using HRSC images for the presence of scalloped terrain, and revealed that almost all scalloped terrains are in the Malea Planum region near the southern wall of the Hellas basin [7]. We mapped the distribution of scalloped terrain between 50° and 70° E and 50° and 70° S. The results of the map showed that the scalloped terrains contour the southern wall of the Hellas basin between the elevations of 1000 m and -2000 m, and that the icerich mantle is thickest in this region [7]. Data and Methods: High resolution HiRISE images of the scalloped terrain of Malea Planum were used to investigate small scale features. Daytime infrared images from

  6. Crystal Structure of a Phosphorylated Light Chain Domain of Scallop Smooth-Muscle Myosin

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, V.S.; Robinson, H.; O-Neall-Hennessey, E.; Reshetnikova, L.; Brown, J. H.; Szent-Gyorgyi, A. G.; Cohen, C.

    2011-11-02

    We have determined the crystal structure of a phosphorylated smooth-muscle myosin light chain domain (LCD). This reconstituted LCD is of a sea scallop catch muscle myosin with its phosphorylatable regulatory light chain (RLC SmoA). In the crystal structure, Arg{sup 16}, an arginine residue that is present in this isoform but not in vertebrate smooth-muscle RLC, stabilizes the phosphorylation site. This arginine interacts with the carbonyl group of the phosphorylation-site serine in the unphosphorylated LCD (determined previously), and with the phosphate group when the serine is phosphorylated. However, the overall conformation of the LCD is essentially unchanged upon phosphorylation. This result provides additional evidence that phosphorylation of the RLC is unlikely to act as an on-switch in regulation of scallop catch muscle myosin.

  7. Proteomic analysis identifies proteins related to carotenoid accumulation in Yesso scallop (Patinopecten yessoensis).

    Science.gov (United States)

    Zhang, Yueyue; Zhang, Lingling; Sun, Jin; Qiu, Jianwen; Hu, Xiaoli; Hu, Jingjie; Bao, Zhenmin

    2014-03-15

    Carotenoids are powerful antioxidants that affect many physiological functions. As an important source of natural carotenoids, marine mollusks contain various types of carotenoids and are receiving increasing research attention. To better understand the molecular mechanism underlying carotenoid accumulation in marine mollusks, a new variety of carotenoid-enriched Yesso scallop (Patinopecten yessoensis), named "Haida golden scallop", was used in this study. A proteomic approach was applied to explore the differences between the new variety and common individuals, resulting in seven differentially expressed proteins. Real-time PCR showed that four of the corresponding genes were also significantly up-regulated at the mRNA level in the new variety. Genes involved in various biological processes, such as lipid and glucose metabolism, protein-folding and degradation, were altered. Peroxisome proliferator-activated receptors (PPARs) may play a vital role in these changes. This study represents the first step towards future work on the genetic basis of carotenoid accumulation in marine mollusks.

  8. Proteomic analysis of scallop hepatopancreatic extract provides insights into marine polysaccharide digestion

    Science.gov (United States)

    Lyu, Qianqian; Jiao, Wenqian; Zhang, Keke; Bao, Zhenmin; Wang, Shi; Liu, Weizhi

    2016-01-01

    Marine polysaccharides are used in a variety of applications, and the enzymes that degrade these polysaccharides are of increasing interest. The main food source of herbivorous marine mollusks is seaweed, and several polysaccharide-degrading enzymes have been extracted from mollusk digestive glands (hepatopancreases). Here, we used a comprehensive proteomic approach to examine the hepatopancreatic proteins of the Zhikong scallop (Chlamys farreri). We identified 435 proteins, the majority of which were lysosomal enzymes and carbohydrate and protein metabolism enzymes. However, several new enzymes related to polysaccharide metabolism were also identified. Phylogenetic and structural analyses of these enzymes suggest that these polysaccharide-degrading enzymes may have a variety of potential substrate specificities. Taken together, our study characterizes several novel polysaccharide-degrading enzymes in the scallop hepatopancreas and provides an enhanced view of these enzymes and a greater understanding of marine polysaccharide digestion. PMID:27982037

  9. Construction of bacterial artificial chromosome libraries for Zhikong Scallop Chlamys farreri

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yang; ZHANG Xiaojun; Chantel F.SCHEURING; ZHANG Hongbin; LI Fuhua; XIANG Jianhai

    2008-01-01

    Two Large-insert genomic bacterial artificial chromosome (BAC) libraries of Zhikong scallop Chlamys farreri were constructed to promote our genetic and genomic research.High-quality megabase-sized DNA was isolated from the adductor muscle of the scallop and partially digested by BamH I and Mbo I,respectively.The BamH I library consisted of 53760 clones while the Mbo I library consisted of 7680 clones.Approximately 96% of the clones in BamH I library contained nuclear DNA inserts in average size of 100 kb,providing a coverage of 5.3 haploid genome equivalents.Similarly,the Mbo I library with an average insert of 145 kb and no insert-empty clones,thus providing a genome coverage of 1.1 haploid genome equivalents.

  10. In the darkness of the polar night, scallops keep on a steady rhythm

    Science.gov (United States)

    Tran, Damien; Sow, Mohamedou; Camus, Lionel; Ciret, Pierre; Berge, Jorgen; Massabuau, Jean-Charles

    2016-08-01

    Although the prevailing paradigm has held that the polar night is a period of biological quiescence, recent studies have detected noticeable activity levels in marine organisms. In this study, we investigated the circadian rhythm of the scallop Chlamys islandica by continuously recording the animal’s behaviour over 3 years in the Arctic (Svalbard). Our results showed that a circadian rhythm persists throughout the polar night and lasts for at least 4 months. Based on observations across three polar nights, we showed that the robustness and synchronicity of the rhythm depends on the angle of the sun below the horizon. The weakest rhythm occurred at the onset of the polar night during the nautical twilight. Surprisingly, the circadian behaviour began to recover during the darkest part of the polar night. Because active rhythms optimize the fitness of an organism, our study brings out that the scallops C. islandica remain active even during the polar night.

  11. A BAC-based physical map of Zhikong scallop (Chlamys farreri Jones et Preston.

    Directory of Open Access Journals (Sweden)

    Xiaojun Zhang

    Full Text Available Zhikong scallop (Chlamys farreri is one of the most economically important aquaculture species in China. Physical maps are crucial tools for genome sequencing, gene mapping and cloning, genetic improvement and selective breeding. In this study, we have developed a genome-wide, BAC-based physical map for the species. A total of 81,408 clones from two BAC libraries of the scallop were fingerprinted using an ABI 3130xl Genetic Analyzer and a fingerprinting kit developed in our laboratory. After data processing, 63,641 (∼5.8× genome coverage fingerprints were validated and used in the physical map assembly. A total of 3,696 contigs were assembled for the physical map. Each contig contained an average of 10.0 clones, with an average physical size of 490 kb. The combined total physical size of all contigs was 1.81 Gb, equivalent to approximately 1.5 fold of the scallop haploid genome. A total of 10,587 BAC end sequences (BESs and 167 markers were integrated into the physical map. We evaluated the physical map by overgo hybridization, BAC-FISH (fluorescence in situ hybridization, contig BAC pool screening and source BAC library screening. The results have provided evidence of the high reliability of the contig physical map. This is the first physical map in mollusc; therefore, it provides an important platform for advanced research of genomics and genetics, and mapping of genes and QTL of economical importance, thus facilitating the genetic improvement and selective breeding of the scallop and other marine molluscs.

  12. 78 FR 16573 - Fisheries of the Northeastern United States; Atlantic Sea Scallop Fishery and Northeast...

    Science.gov (United States)

    2013-03-15

    ... delayed past March 1, 2014, scallop vessels would be restricted to fishing in open areas until final FY... take a net loss of 33,000 lb (14,969 kg). If Vessel A took two HC trips (36,000 lb; 16,329 kg), it would incur a net loss of 15,000 lb (6,804 kg). Because Vessel B would be allocated an HC trip at...

  13. Performance of scallop mantle collagen and hydrolysate as hair care materials

    OpenAIRE

    申, 鉉日; 神, 雄介; 川上, 健作; 栗原, 秀幸; 高橋, 是太郎

    2005-01-01

    Pepsin solubilized collagen, hot water extracted collagen, and collagen peptite were prepared from scallop mantle. They were subjected to the measurements of moisture sorption ability, denaturation temperature, foaming ability, restoration of hair cuticles, and breaking strength of the individual hair, in contrast to bovine skin collagen,gelatin and peptide, respectively to evaluate the rationality using them as raw materials as hair care goods and cosmetic products.

  14. Metallothionein-like proteins induced by cadmium stress in the scallop Mizuhopecten yessoensis

    Science.gov (United States)

    Zhukovskaya, Avianna F.; Belcheva, Nina N.; Slobodskova, Valentina S.; Chelomin, Viktor P.

    2012-09-01

    Organisms have evolved a cellular response called stress protein response that increases their tolerance in adverse environmental conditions. Well known stress proteins that bind essential and toxic metals are metallothionein (MT). The scallop Mizuhopecten yessoensis is the most interesting organism because it is able to accumulate toxic cadmium in its digestive gland. However, in the tissue of the digestive gland of Mizuhopecten yessoensis MT (metallothioneins) have not been found. Eastern scallops, Mizuhopecten yessoensis, were collected from two locations — one clean and one polluted site. The concentrations of cadmium (Cd), copper (Cu) and zinc (Zn) were measured in the digestive gland. There was a significant increase in Cd concentrations in this studied tissue. We found that in the presence of cadmium Mizuhopecten yessoensis can induce high molecular proteins. The results of experiments have shown that Cd-binding ligands have a number of properties similar to MT: acetone and temperature stability; the ability to bind some metals, including Cd, Cu and Zn. Protein chromatography (FPLC, Superosa 12) from the digestive gland of scallop M. yessoensis has shown that cadmium is associated with high molecular weight Cd-binding proteins (72 kDa and 43 kDa). The major cadmium-binding protein 72 kDa is glycoprotein. In experiments we have demonstrated that Cd-binding proteins can be induced when there is cadmium exposure. The results of this study strongly suggest that the far eastern scallop Mizuhopecten yessoensis has a unique and well-developed system for the detoxification of heavy metals and it allows for biochemical systems to be maintained in a relatively stable manner in the presence of heavy metals.

  15. Exposure to domoic acid affects larval development of king scallop Pecten maximus (Linnaeus, 1758).

    Science.gov (United States)

    Liu, Hui; Kelly, Maeve S; Campbell, Dirk A; Dong, Shuang Lin; Zhu, Jian Xin; Wang, Su Feng

    2007-02-28

    Domoic acid (DA) is a highly toxic phycotoxin produced by bloom forming marine diatoms Pseudo-nitzschia spp. Bivalves can accumulate this toxin to a high level through their feeding activities, and thus illness or death in can occur in consumers of bivalves. In this study, king scallop, Pecten maximus, larvae were exposed to dissolved domoic acid (DA) for 25d, and the toxin accumulation and effects of harbouring this toxin were investigated. Scallop larvae incorporated DA continuously during the larval culture period and accumulated a maximum DA level of 5.21pgind(-1) when exposed to a solution of 50ngml(-1) dissolved DA. As a result of the DA treatment, larval growth, measured in terms of shell length and the appearance of the eye-spot, and larval survival were significantly compromised. This is the first study on DA incorporation dynamics in P. maximus larvae, signifying the potential of using shellfish larvae for the study on mechanisms of phycotoxin accumulation. The negative effect of DA exposure suggests that this toxin could possibly influence natural recruitment in P. maximus, and it may be necessary to protect hatchery-cultured scallop larvae from DA during toxic Pseudo-nitzschia blooms.

  16. Identification of Cytochrome P450 ( CYP) genes in Zhikong scallop ( Chlamys farreri)

    Science.gov (United States)

    Guo, Huihui; Bao, Zhenmin; Du, Huixia; Zhang, Lingling; Wang, Shi; Sun, Luyang; Mou, Xiaoyu; Hu, Xiaoli

    2013-03-01

    Cytochrome P450 ( CYP) superfamily is one of the membership largest and function most diverse protein superfamily recogniozed among living beings. Members of this superfamily were further assigned to different families and subfamilies based on their amino acid similarities. According to their phylogenetic relationships, the CYP genes which likely diverged from common ancestor gene and may share common functions were grouped into one clan. Widely distributing scallops are a group of the most conspicuous bivalve; however the studies on their CYP is acarce. In this study, we searched the genome and expressed sequence tags of Zhikong scallop ( Chlamys farreri) for CYP genes. In total, 88 non-redundant CYP were identified, which were homed in 13 CYPs gene families. Phylogenetic analysis divided these genes into 4 CYP clans. As in deuterostomes, Clan 2 was the largest, which contained 33 genes belonging to CYP1, CYP2, CYP17 and CYP356 families. Clan 3 contgained 19 genes belonging to CYP3, CYP5 and CYP30 families. Clan 4 contained 23 genes, all belonging to CYP4 family. The mitochondrial CYP clan contained 9 genes belonging to CYP10 and CYP24 families. In comparison, protostomes ( C. farreri, D. pluex, D. melanogaster) contained more CYP genes than deuterostomes ( S. purpuratus and vertebrates) in Clan 2 but less genes in Clan 3 and Clan 4. Our findings will aid to deciphering CYP function and evolution in scallops and bivalves.

  17. Using a multiscale image processing method to characterize the periodic growth patterns on scallop shells.

    Science.gov (United States)

    Xing, Qiang; Wei, Tengda; Chen, Zhihui; Wang, Yangfan; Lu, Yuan; Wang, Shi; Zhang, Lingling; Bao, Zhenmin

    2017-03-01

    The fine periodic growth patterns on shell surfaces have been widely used for studies in the ecology and evolution of scallops. Modern X-ray CT scanners and digital cameras can provide high-resolution image data that contain abundant information such as the shell formation rate, ontogenetic age, and life span of shellfish organisms. We introduced a novel multiscale image processing method based on matched filters with Gaussian kernels and partial differential equation (PDE) multiscale hierarchical decomposition to segment the small tubular and periodic structures in scallop shell images. The periodic patterns of structures (consisting of bifurcation points, crossover points of the rings and ribs, and the connected lines) could be found by our Space-based Depth-First Search (SDFS) algorithm. We created a MATLAB package to implement our method of periodic pattern extraction and pattern matching on the CT and digital scallop images available in this study. The results confirmed the hypothesis that the shell cyclic structure patterns encompass genetically specific information that can be used as an effective invariable biomarker for biological individual recognition. The package is available with a quick-start guide and includes three examples: http://mgb.ouc.edu.cn/novegene/html/code.php.

  18. Isolation and characterization of melanin pigment from yesso scallop Patinopecten yessoensis

    Science.gov (United States)

    Sun, Xiujun; Wu, Biao; Zhou, Liqing; Liu, Zhihong; Dong, Yinghui; Yang, Aiguo

    2017-04-01

    Melanin is one of the essential compounds in the pigments of molluscan shells. However, the effects of melanin on color variations in molluscs are largely unknown. Our previous study suggests that Yesso scallop Patinopecten yessoensis might contain melanin pigment in the dark brown shell. We therefore isolated melanin from the pigmented shells using hydrochloric acid method, and characterized the types of melanin pigments by spectrophotometry. The purified melanin, which was verified by spectrophotometry scanning and HPLC analysis, showed the typical characteristics of melanin absorption spectra and HPLC chromatograms. The contents of pheomelanin and eumelanin in pigmented shells, which were determined by the linear standard curve of melanin at 405 nm and 350 nm absorbance, were 48.23 ± 1.350 and 157.65 ± 5.905 mg, respectively. The present results indicate that the brown-pigmented shells of scallops comprise approximately 76.6% of eumelanin and 23.4% of pheomelanin, which supports the presence of eumelanin-rich pigment in scallop shells. Therefore, the combination of hydrochloric acid extraction and spectrophotometric quantification is a rapid and efficient method to isolate and quantify melanin in shells. This will facilitate the melanin studies related to shell color polymorphism and the selective breeding of bivalves with different shell colors.

  19. Bayes and empirical Bayes: do they merge?

    CERN Document Server

    Petrone, Sonia; Scricciolo, Catia

    2012-01-01

    Bayesian inference is attractive for its coherence and good frequentist properties. However, it is a common experience that eliciting a honest prior may be difficult and, in practice, people often take an {\\em empirical Bayes} approach, plugging empirical estimates of the prior hyperparameters into the posterior distribution. Even if not rigorously justified, the underlying idea is that, when the sample size is large, empirical Bayes leads to "similar" inferential answers. Yet, precise mathematical results seem to be missing. In this work, we give a more rigorous justification in terms of merging of Bayes and empirical Bayes posterior distributions. We consider two notions of merging: Bayesian weak merging and frequentist merging in total variation. Since weak merging is related to consistency, we provide sufficient conditions for consistency of empirical Bayes posteriors. Also, we show that, under regularity conditions, the empirical Bayes procedure asymptotically selects the value of the hyperparameter for ...

  20. Evaluación en ambiente natural, del uso de biopelículas marinas en el asentamiento larval de Argopecten purpuratus (Lamarck, 1819 Evaluation in natural environment of use of marine biofilms, in the larval settlement of Argopecten purpuratus (Lamarck, 1819

    Directory of Open Access Journals (Sweden)

    Marcela Cantillánez

    2010-01-01

    Full Text Available En una granja marina ubicada colindante con el área de reserva marina “La Rinconada” (Antofagasta, Chile, se evaluó el asentamiento larval del pectínido Argopecten purpuratus sobre colectores impregnados con películas multi-específicas, de las diatomeas Navicula sp. y Amphora sp., y de la cepa bacteriana NC1, aisladas desde colectores utilizados en captaciones comerciales de esta especie que presentaron altos índices de fijación, y que bajo condiciones controladas de criadero y laboratorio, han mostrando altos niveles de asentamiento larval. Los resultados obtenidos con el uso de estas biopelículas, sobre colectores instalados en forma paralela a los utilizados por la empresa para la captación de semilla con fines comerciales, no mostraron diferencias significativas entre los diferentes tratamientos probados y el control, respecto a las fijaciones ocurridas en un lapso de 30 días de inmersión. Se discute, debido a los tiempos que demandaron las larvas de la primera cohorte en asentarse sobre los colectores tratados, un posible reemplazo de las biopelículas utilizadas, por otra común en todos ellos y atractiva para el asentamiento de las larvas, como causa de la ausencia de efectos significativos de los tratamientos probados en el medio natural. Se recomienda la necesidad de establecer el tiempo de permanencia, en el ambiente natural, de las biopelículas impregnadas a los colectores en laboratorio.In a commercial farm located near the Marine Reserve “La Rinconada” (Antofagasta, Chile the larval settlement of Argopecten purpuratus on artificial collectors impregnated with multiespecific films of marine diatoms Navicula sp. and Amphora sp. and, bacterial strain NC1 were evaluated, These biofilms were isolates from artificial collector used in commercial activities with highest index of settlement in hatchery and laboratory conditions. The results to use this biofilms in collectors installed in same condition of commercial

  1. Morphofunctional study of hemocytes from lions-paw scallop Nodipecten subnodosus.

    Science.gov (United States)

    Estrada, Norma; Velázquez, Edwin; Rodríguez-Jaramillo, Carmen; Ascencio, Felipe

    2013-08-01

    Hemocytes play an important role in internal defense in mollusk bivalves; they are generally divided into granular and hyaline types, where the granules possess molecules to combat foreign particles. We investigated the morphology, staining reactions, and immune-related activities of hemocytes from the pectinid lions-paw scallop Nodipecten subnodosus. We showed that, in contrast to the conditions in most bivalves and similar to other pectinids, no granular cells were observed; only very few semi-granular cells were present and the large majority of cells were hyalinocytes and blast-like cells. The cytoplasm in many hyalinocytes showed vesicles of various sizes, but none with the staining characteristics of typical granules. When hemolymph was removed from these scallops, the plasma did not clot and the hemocytes rapidly adhered to one another in suspension. When living hemocytes were placed on a glass surface, they clustered into groups of various sizes; within minutes, pseudopods extended from the cells and outward migration began. Many cells spread to form extensive networks of flat cells, and other undifferentiated cells did not spread and kept a rounded morphology. Some hemocytes were immunologically active because they phagocytize Escherichia coli bacteria. Hemocytes expressed the carbohydrates residues N-acetyl-D-glucosamine, α-D-glucose, α-D-mannose, and α-L-fucose moieties, and cytochemical assays showed activity of acid phosphatase, specific esterase, and non-specific esterase, enzymes commonly associated with lysosomes and immunologic activity. These observations serve as a useful tool for further investigation of morphofunctional studies and physiological status of scallops. Copyright © 2013 Elsevier GmbH. All rights reserved.

  2. A dopa decarboxylase modulating the immune response of scallop Chlamys farreri.

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    Zhi Zhou

    Full Text Available BACKGROUND: Dopa decarboxylase (DDC is a pyridoxal 5-phosphate (PLP-dependent enzyme that catalyzes the decarboxylation of L-Dopa to dopamine, and involved in complex neuroendocrine-immune regulatory network. The function for DDC in the immunomodulation remains unclear in invertebrate. METHODOLOGY: The full-length cDNA encoding DDC (designated CfDDC was cloned from mollusc scallop Chlamys farreri. It contained an open reading frame encoding a polypeptide of 560 amino acids. The CfDDC mRNA transcripts could be detected in all the tested tissues, including the immune tissues haemocytes and hepatopancreas. After scallops were treated with LPS stimulation, the mRNA expression level of CfDDC in haemocytes increased significantly (5.5-fold, P<0.05 at 3 h and reached the peak at 12 h (9.8-fold, P<0.05, and then recovered to the baseline level. The recombinant protein of CfDDC (rCfDDC was expressed in Escherichia coli BL21 (DE3-Transetta, and 1 mg rCfDDC could catalyze the production of 1.651±0.22 ng dopamine within 1 h in vitro. When the haemocytes were incubated with rCfDDC-coated agarose beads, the haemocyte encapsulation to the beads was increased significantly from 70% at 6 h to 93% at 24 h in vitro in comparison with that in the control (23% at 6 h to 25% at 24 h, and the increased haemocyte encapsulation was repressed by the addition of rCfDDC antibody (which is acquired via immunization 6-week old rats with rCfDDC. After the injection of DDC inhibitor methyldopa, the ROS level in haemocytes of scallops was decreased significantly to 0.41-fold (P<0.05 of blank group at 12 h and 0.47-fold (P<0.05 at 24 h, respectively. CONCLUSIONS: These results collectively suggested that CfDDC, as a homologue of DDC in scallop, modulated the immune responses such as haemocytes encapsulation as well as the ROS level through its catalytic activity, functioning as an indispensable immunomodulating enzyme in the neuroendocrine-immune regulatory network of mollusc.

  3. Variation in Size and Growth of the Great Scallop Pecten maximus along a Latitudinal Gradient

    Science.gov (United States)

    Chauvaud, Laurent; Patry, Yann; Jolivet, Aurélie; Cam, Emmanuelle; Le Goff, Clement; Strand, Øivind; Charrier, Grégory; Thébault, Julien; Lazure, Pascal; Gotthard, Karl; Clavier, Jacques

    2012-01-01

    Understanding the relationship between growth and temperature will aid in the evaluation of thermal stress and threats to ectotherms in the context of anticipated climate changes. Most Pecten maximus scallops living at high latitudes in the northern hemisphere have a larger maximum body size than individuals further south, a common pattern among many ectotherms. We investigated differences in daily shell growth among scallop populations along the Northeast Atlantic coast from Spain to Norway. This study design allowed us to address precisely whether the asymptotic size observed along a latitudinal gradient, mainly defined by a temperature gradient, results from differences in annual or daily growth rates, or a difference in the length of the growing season. We found that low annual growth rates in northern populations are not due to low daily growth values, but to the smaller number of days available each year to achieve growth compared to the south. We documented a decrease in the annual number of growth days with age regardless of latitude. However, despite initially lower annual growth performances in terms of growing season length and growth rate, differences in asymptotic size as a function of latitude resulted from persistent annual growth performances in the north and sharp declines in the south. Our measurements of daily growth rates throughout life in a long-lived ectothermic species provide new insight into spatio-temporal variations in growth dynamics and growing season length that cannot be accounted for by classical growth models that only address asymptotic size and annual growth rate. PMID:22649553

  4. Space utilisation patterns of bryozoans on the Patagonian scallop Psychrochlamys patagonica

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    Juan López Gappa

    2009-03-01

    Full Text Available We studied the bryozoan assemblage encrusting valves of the Patagonian scallop, Psychrochlamys patagonica, in 4 beds distributed along the continental shelf off Argentina to analyse (a the distribution pattern of bryozoan colonies in different zones of the valves, (b the influence of interspecific competition on assemblage composition, (c whether encrusting species display different space utilisation strategies, and (d whether bryozoan species richness and number of colonies vary in relation to host size. The assemblage was composed of 22 taxa and was dominated by Arachnopusia monoceros and Osthimosia eatonensis, which were at least one order of magnitude more abundant than any other species. Multivariate analyses based on coverage data of multiserial bryozoans separated the beds according to species richness rather than to geographic proximity and showed significant differences in assemblage structure between upper (left and lower (right valves and among beds. Competitive interactions occurred almost exclusively on lower valves, and more frequently in peripheral zones than in central zones of these valves. Correlations between valve area and number of bryozoan colonies, coverage and species richness were low but significant. Bryozoans were significantly more frequent, larger, and taxonomically diverse on lower valves than on upper valves. The uniserial colonies of Neothoa cf. chiloensis, the weakest bryozoan competitor, were as frequent in central zones as they were in peripheral zones, and usually spread out along channels on the scallop surface. This fugitive species was partially covered by multiserial colonies, but managed to persist even in peripheral areas of the lower valves.

  5. Shell damage in the Tehuelche scallop Aequipecten tehuelchus caused by Polydora rickettsi (Polychaeta: Spionidae) infestation.

    Science.gov (United States)

    Diez, M E; Orensanz, J M; Márquez, F; Cremonte, F

    2013-10-01

    The different types of shell damage caused to the commercially valuable Tehuelche scallop (Aequipecten tehuelchus) by the polychaete Polydora rickettsi are described. X-rays, computerized tomography, shell sections, scanning electron microscopy, Energy Dispersive X-ray analysis (EDAX), mineralogical analyses and geometric morphometrics were applied to that end. Scallop shells presented three types of damage: (1) spots, (2) calcareous alterations, and (3) mud blisters. Microstructural alterations consisted of a simple conchiolin membranous layer in the case of spots, a series of interleaved layers of different degree of calcifications in calcareous alterations, and two different surface morphologies (muddy and mucous layers) in mud blisters. Damage was localized mainly along concentric growth rings, coincidentally with the location of most burrows, as shown by X-ray. Mineralogical analysis showed that in all cases (including non-infested shells) calcite was the calcium carbonate polymorph present. Geometric morphometrics showed that only 5% of shape variation was explained by infestation with P. rickettsi, irrespective of the type of damage. Number of worms per infested shell varied significantly among four beds. Left shells (upward-oriented) were significantly more affected than right shells, which are in closer contact with the bottom.

  6. Effects of benzo(a)pyrene exposure on the antioxidant enzyme activity of scallop Chlamys farreri

    Science.gov (United States)

    Pan, Luqing; Ren, Jiayun; Zheng, Debin

    2009-02-01

    Scallop Chlamys farreri was exposed to different concentrations of benzo(a)pyrene (BaP) (0.5 μg/L, 1.0 μg/L, 10.0 μg/L and 50.0 μg/L) for 30 days in seawater. The 7-ethoxyresorufin O-deethylase (EROD) activity was significantly induced, and increased with the increasing BaP concentration. The glutathione-S-transferase (GST), superoxide dismutase (SOD), catalase (CAT), Glutathione peroxidase (GPx) activities increased in short time at low concentration of BaP, and was significantly depressed at high concentrations. Scallop gill was more sensitive to BaP than the digestive gland, and the digestive gland was the main tissue to deal with oxyradicals. The contents of malondialdehyde (MDA) increased with the exposure time and there was a positive correlation (concentration-effect) between the MDA content and the concentration of BaP. The biomarkers determined in this experiment had important roles in detoxification, and showed great potential as biomarkers for oxidative stress. Controlled laboratory experiments designed to simulate field exposure scenarios are particularly useful in ascertaining biomarkers suitable for use with complex contaminant mixtures in the marine environment.

  7. Biological effects of mechanically and chemically dispersed oil on the Icelandic scallop (Chlamys islandica).

    Science.gov (United States)

    Frantzen, Marianne; Regoli, Francesco; Ambrose, William G; Nahrgang, Jasmine; Geraudie, Perrine; Benedetti, Maura; Locke, William L; Camus, Lionel

    2016-05-01

    This study aimed to simulate conditions in which dispersant (Dasic NS) might be used to combat an oil spill in coastal sub-Arctic water of limited depth and water exchange in order to produce input data for Net Environmental Benefit Analysis (NEBA) of Arctic and sub-Arctic coastal areas. Concentration dependent differences in acute responses and long-term effects of a 48h acute exposure to dispersed oil, with and without the application of a chemical dispersant, were assessed on the Arctic filter feeding bivalve Chlamys islandica. Icelandic scallops were exposed for 48h to a range of spiked concentrations of mechanically and chemically dispersed oil. Short-term effects were assessed in terms of lysosomal membrane stability, superoxide dismutase, catalase, gluthatione S-transferases, glutathione peroxidases, glutathione reductase, glutathione, total oxyradical scavenging capacity, lipid peroxidation and peroxisomal proliferation. Post-exposure survival, growth and reproductive investment were followed for 2 months to evaluate any long-term consequence. Generally, similar effects were observed in scallops exposed to mechanically and chemically dispersed oil. Limited short-term effects were observed after 48h, suggesting that a different timing would be required for measuring the possible onset of such effects. There was a concentration dependent increase in cumulative post-exposure mortality, but long-term effects on gonadosomatic index, somatic growth/condition factor did not differ among treatments.

  8. A chemical assessment of freshness in stored adductor muscle from scallops

    Directory of Open Access Journals (Sweden)

    A.E. Massa

    2003-06-01

    Full Text Available The postmortem catabolism of adenosine triphosphate (ATP in cold-stored adductor muscles from scallops (Zygochlamys patagónica was studied. Changes in the pH of stored muscles were also studied. The ATP content increased for a short time after death and afterwards decreased up to 24 hr of storage. Thereafter, the nucleotide level remained unchanged up to the end of storage. The ADP content slightly decreased up to 48 hr and after that remained unchanged. The AMP slowly accumulated to around 15% of the total nucleotide concentration when the ATP decreased. Small amounts of IMP were detected in all samples. Conversely, adenosine (Ado was not detected. Inosine (HxR increased slightly after 48 hr of storage and hypoxanthine (Hx increased significantly after 24 hr. The 260/250 absorbance ratio of muscle extracts and the pH of stored muscles fell sharply up to 24 hr and then decreased slowly up to the end of storage. The hypoxanthine concentration and the 260/250 absorbance ratio could be reliable indicators of storage age in adductor muscles from scallops.

  9. Effects of benzo(a)pyrene exposure on the antioxidant enzyme activity of scallop Chlamys farreri

    Institute of Scientific and Technical Information of China (English)

    PAN Luqing; REN Jiayun; ZHENG Debin

    2009-01-01

    Scallop Chlamys farreri was exposed to different concentrations of benzo(a)pyrene (BaP) (0.5 μg/L, 1.0 μg/L, 10.0 μg/L and 50.0 μg/L) for 30 days in seawater. The 7-ethoxyresorufin O-deethylase (EROD) activity was significantly induced, and increased with the increasing BaP concentration. The glutathione-S-transferase (GST), superoxide dismutase (SOD), catalase (CAT), Glutathione peroxidase (GPx) activities increased in short time at low concentration of BaP, and was significantly depressed at high concentrations. Scallop gill was more sensitive to BaP than the digestive gland, and the digestive gland was the main tissue to deal with oxyradicals. The contents of malondialdehyde (MDA) increased with the exposure time and there was a positive correlation (concentration-effect) between the MDA content and the concentration of BaP. The biomarkers determined in this experiment had important roles in detoxification, and showed great potential as biomarkers for oxidative stress. Controlled laboratory experiments designed to simulate field exposure scenarios are particularly useful in ascertaining biomarkers suitable for use with complex contaminant mixtures in the marine environment.

  10. Conservation Genetics of the Scalloped Hammerhead Shark in the Pacific Coast of Colombia.

    Science.gov (United States)

    Quintanilla, Sonia; Gómez, Alberto; Mariño-Ramírez, Camila; Sorzano, Carolina; Bessudo, Sandra; Soler, German; Bernal, Jaime E; Caballero, Susana

    2015-01-01

    Previous investigations of the population genetics of the scalloped hammerhead sharks (Sphyrna lewini) in the Eastern Tropical Pacific have lacked information about nursery areas. Such areas are key to promoting conservation initiatives that can protect young sharks from threats such as overfishing. Here, we investigated the genetic diversity, phylogeography, and connectivity of S. lewini found in 3 areas of Colombia's Pacific coast: around Malpelo Island and in 2 National Natural Parks on the Colombian Pacific mainland (Sanquianga and Ensenada de Utría). We analyzed mtDNA control region (CR) sequences and genotyped 15 microsatellite loci in 137 samples of adults and juveniles. The mtDNA analyses showed haplotypes shared between the Colombian Pacific individuals sampled in this investigation and other areas in the Eastern Tropical Pacific, the Indo-Pacific, and with sequences previously reported in Colombia (Buenaventura Port), as well as 4 unique haplotypes. Population assignment and paternity analyses detected 3 parent-offspring pairs between Malpelo and Sanquianga and 1 between Malpelo and Utría. These results indicate high genetic connectivity between Malpelo Island and the Colombian Pacific coast, suggesting that these 2 areas are nurseries for S. lewini. This is, to our knowledge, the first evidence of nursery areas identified for the scalloped hammerhead shark anywhere in the world. Additional conservation planning may be required to protect these nursery habitats of this endangered shark species.

  11. Scallop phenylalanine hydroxylase implicates in immune response and can be induced by human TNF-α.

    Science.gov (United States)

    Zhou, Zhi; Wang, Lingling; Wang, Mengqiang; Zhang, Huan; Wu, Tiantian; Qiu, Limei; Song, Linsheng

    2011-12-01

    Phenylalanine hydroxylase (PAH) is an important metabolic enzyme of aromatic amino acids, which is responsible for the irreversible oxidation of phenylalanine to tyrosine. In the present study, the full-length cDNA encoding PAH from Chlamys farreri (designated CfPAH) was cloned by using rapid amplification of cDNA ends (RACE) approaches and expression sequence tag (EST) analysis. The open reading frame of CfPAH encoded a polypeptide of 460 amino acids, and its sequence shared 64.4-74.2% similarity with those of PAHs from other animals. There were an N-terminal regulatory ACT domain and a C-terminal catalytic Biopterin_H domain in the deduced CfPAH protein. The mRNA transcripts of CfPAH could be detected in all the tested tissues, including adductor muscle, mantle, gill, gonad, haemocytes and hepatopancreas. And its expression level in haemocytes was increased significantly during 3-48 h after bacteria Vibrio anguillarum challenge with the highest level (9.1-fold, P phenylalanine to tyrosine within 1 min (nmol min(-1) mg(-1) protein) in vitro. These results indicated collectively that CfPAH, as a homologue of phenylalanine hydroxylase in scallop C. farreri, could be induced by cytokine and involved in the immunomodulation of scallops by supplying the starting material tyrosine for the synthesis of melanin and catecholamines.

  12. Crawling scallop: Friction-based locomotion with one degree of freedom

    CERN Document Server

    Wagner, Gregory L; 10.1016/j.jtbi.2013.01.021

    2013-01-01

    Fluid-based locomotion at low Reynolds number is subject to the constraints of the scallop theorem, which dictate that body kinematics identical under a time-reversal symmetry (in particular, those with a single degree of freedom) cannot display locomotion on average. The implications of the theorem naturally compel one to ask whether similar symmetry constraints exist for locomotion in different environments. In this work we consider locomotion along a surface where forces are described by isotropic Coulomb friction. To address whether motions with a single degree of freedom can lead to transport, we analyze a model system consisting of two bodies whose separation distance undergoes periodic time variations. The behavior of the two-body system is entirely determined by the kinematic specification of their separation, the friction forces, and the mass of each body. We show that the constraints of the scallop theorem can be escaped in frictional media if two asymmetry conditions are met at the same time: the f...

  13. An Integrated Assessment Model for Helping the United States Sea Scallop (Placopecten magellanicus Fishery Plan Ahead for Ocean Acidification and Warming.

    Directory of Open Access Journals (Sweden)

    Sarah R Cooley

    Full Text Available Ocean acidification, the progressive change in ocean chemistry caused by uptake of atmospheric CO2, is likely to affect some marine resources negatively, including shellfish. The Atlantic sea scallop (Placopecten magellanicus supports one of the most economically important single-species commercial fisheries in the United States. Careful management appears to be the most powerful short-term factor affecting scallop populations, but in the coming decades scallops will be increasingly influenced by global environmental changes such as ocean warming and ocean acidification. In this paper, we describe an integrated assessment model (IAM that numerically simulates oceanographic, population dynamic, and socioeconomic relationships for the U.S. commercial sea scallop fishery. Our primary goal is to enrich resource management deliberations by offering both short- and long-term insight into the system and generating detailed policy-relevant information about the relative effects of ocean acidification, temperature rise, fishing pressure, and socioeconomic factors on the fishery using a simplified model system. Starting with relationships and data used now for sea scallop fishery management, the model adds socioeconomic decision making based on static economic theory and includes ocean biogeochemical change resulting from CO2 emissions. The model skillfully reproduces scallop population dynamics, market dynamics, and seawater carbonate chemistry since 2000. It indicates sea scallop harvests could decline substantially by 2050 under RCP 8.5 CO2 emissions and current harvest rules, assuming that ocean acidification affects P. magellanicus by decreasing recruitment and slowing growth, and that ocean warming increases growth. Future work will explore different economic and management scenarios and test how potential impacts of ocean acidification on other scallop biological parameters may influence the social-ecological system. Future empirical work on the

  14. An Integrated Assessment Model for Helping the United States Sea Scallop (Placopecten magellanicus) Fishery Plan Ahead for Ocean Acidification and Warming.

    Science.gov (United States)

    Cooley, Sarah R; Rheuban, Jennie E; Hart, Deborah R; Luu, Victoria; Glover, David M; Hare, Jonathan A; Doney, Scott C

    2015-01-01

    Ocean acidification, the progressive change in ocean chemistry caused by uptake of atmospheric CO2, is likely to affect some marine resources negatively, including shellfish. The Atlantic sea scallop (Placopecten magellanicus) supports one of the most economically important single-species commercial fisheries in the United States. Careful management appears to be the most powerful short-term factor affecting scallop populations, but in the coming decades scallops will be increasingly influenced by global environmental changes such as ocean warming and ocean acidification. In this paper, we describe an integrated assessment model (IAM) that numerically simulates oceanographic, population dynamic, and socioeconomic relationships for the U.S. commercial sea scallop fishery. Our primary goal is to enrich resource management deliberations by offering both short- and long-term insight into the system and generating detailed policy-relevant information about the relative effects of ocean acidification, temperature rise, fishing pressure, and socioeconomic factors on the fishery using a simplified model system. Starting with relationships and data used now for sea scallop fishery management, the model adds socioeconomic decision making based on static economic theory and includes ocean biogeochemical change resulting from CO2 emissions. The model skillfully reproduces scallop population dynamics, market dynamics, and seawater carbonate chemistry since 2000. It indicates sea scallop harvests could decline substantially by 2050 under RCP 8.5 CO2 emissions and current harvest rules, assuming that ocean acidification affects P. magellanicus by decreasing recruitment and slowing growth, and that ocean warming increases growth. Future work will explore different economic and management scenarios and test how potential impacts of ocean acidification on other scallop biological parameters may influence the social-ecological system. Future empirical work on the effect of ocean

  15. Application of Scallop shell-Fe3O4 nanoparticles for the removal of Cr(VI) from aqueous solutions.

    Science.gov (United States)

    Mohagheghian, Azita; Vahidi-Kolur, Robabeh; Pourmohseni, Melina; Yang, Jae-Kyu; Shirzad-Siboni, Mehdi

    2017-05-01

    In this study, removal of Cr(VI) by Scallop shell-Fe3O4 nanoparticles was investigated with variation of pH, adsorbent dosage, initial Cr(VI) concentration, ionic strength and temperature. Coating of Fe3O4 nanoparticles onto Scallop shell was identified by Fourier transform infrared spectroscopy, X-ray diffraction, scanning electron microscopy and energy dispersive X-ray analysis. The maximum adsorption was observed at pH 3. Removal efficiency of Cr(VI) was increased with increasing adsorbent dosage, but was decreased with increasing initial Cr(VI) concentration and temperature. Removal efficiency of Cr(VI) was decreased in the presence of sulfate and carbonate ions. Adsorption kinetic study revealed that a pseudo-second order model better described the removal data than a pseudo-first order model and an intra-particle diffusion model. Maximum adsorption capacity was estimated to be 34.48 mg/g. Thermodynamic studies indicated that adsorption of Cr(VI) onto Scallop shell-Fe3O4 nanoparticles occurred via an exothermic (ΔH = -320.88 KJ mol(-1)) process. Adsorption efficiency of Cr(VI) by Scallop shell-Fe3O4 nanoparticles was maintained even after eight successive cycles.

  16. Exposure to seismic air gun signals causes physiological harm and alters behavior in the scallop Pecten fumatus.

    Science.gov (United States)

    Day, Ryan D; McCauley, Robert D; Fitzgibbon, Quinn P; Hartmann, Klaas; Semmens, Jayson M

    2017-09-18

    Seismic surveys map the seabed using intense, low-frequency sound signals that penetrate kilometers into the Earth's crust. Little is known regarding how invertebrates, including economically and ecologically important bivalves, are affected by exposure to seismic signals. In a series of field-based experiments, we investigate the impact of exposure to seismic surveys on scallops, using measurements of physiological and behavioral parameters to determine whether exposure may cause mass mortality or result in other sublethal effects. Exposure to seismic signals was found to significantly increase mortality, particularly over a chronic (months postexposure) time scale, though not beyond naturally occurring rates of mortality. Exposure did not elicit energetically expensive behaviors, but scallops showed significant changes in behavioral patterns during exposure, through a reduction in classic behaviors and demonstration of a nonclassic "flinch" response to air gun signals. Furthermore, scallops showed persistent alterations in recessing reflex behavior following exposure, with the rate of recessing increasing with repeated exposure. Hemolymph (blood analog) physiology showed a compromised capacity for homeostasis and potential immunodeficiency, as a range of hemolymph biochemistry parameters were altered and the density of circulating hemocytes (blood cell analog) was significantly reduced, with effects observed over acute (hours to days) and chronic (months) scales. The size of the air gun had no effect, but repeated exposure intensified responses. We postulate that the observed impacts resulted from high seabed ground accelerations driven by the air gun signal. Given the scope of physiological disruption, we conclude that seismic exposure can harm scallops.

  17. Papilla preservation between two implants: a modified socket-shield technique to maintain the scalloped anatomy? A case report.

    Science.gov (United States)

    Cherel, Fabrice; Etienne, Daniel

    2014-01-01

    A scalloped anatomy maintained between two adjacent crowns supported by immediate implants is presented in this clinical case. This is a modified concept of the socket-shield technique, which allows preservation of the papilla due in part to preservation of interproximal root fragments. Clinical results at 11 months after implant placement are presented.

  18. The broad pattern recognition spectrum of the Toll-like receptor in mollusk Zhikong scallop Chlamys farreri.

    Science.gov (United States)

    Wang, Mengqiang; Wang, Lingling; Guo, Ying; Sun, Rui; Yue, Feng; Yi, Qilin; Song, Linsheng

    2015-10-01

    Toll-like receptors (TLRs) are among the most studied pattern recognition receptors (PRRs) playing essential roles in innate immune defenses. In the present study, the basic features of CfTLR in mollusk Zhikong scallop Chlamys farreri, including sequence homology, tissue distribution, subcellular localization and ligands spectrum, were investigated to elucidate its pattern recognition. The elements of extracellular domains (ECD) in CfTLR displayed high homology to the corresponding parts of the ECDs in TLRs from Homo sapiens. CfTLR protein was detected in hemocytes, mantle, gills, hepatopancreas, kidney and gonad of the scallops, and it was localized in both the plasma membranes and the lysosomes in HEK293T cells. CfTLR could activate NFκB in response to multiple HsTLR ligands including Pam3CSK4, glucan (GLU), peptidoglycan (PGN), polyriboinosinic:polyribocytidylic acid (poly I:C), Imiquimod and three types of CpG. Additionally, the scallop serum could enhance the induction of NFκB in the CfTLR expressing cells elicited by most PAMPs, including GLU, PGN, Imiquimod and four types of CpG. It could be concluded that this primitive mollusk TLR shared a hybrid function in pattern recognition and could recognize broader ligands than mammalian TLRs, and its mosaic capability of pathogen associated molecular pattern (PAMP) recognition might be based on the basic features of its structure, ligand properties and the assistance of some components in scallop serum.

  19. De novo characterization of Japanese scallop Mizuhopecten yessoensis transcriptome and analysis of its gene expression following cadmium exposure.

    Directory of Open Access Journals (Sweden)

    Xiao-lin Meng

    Full Text Available BACKGROUND: Japanese scallop has been cultured on a large-scale in China for many years. However, serious marine pollution in recent years has resulted in considerable loss to this industry. Moreover, due to the lack of genomic resources, limited research has been carried out on this species. To facilitate the understanding at molecular level immune and stress response mechanism, an extensive transcriptomic profiling and digital gene expression (DGE database of Japanese scallop upon cadmium exposure was carried out using the Illumina sequencing platform. RESULTS: RNA-seq produced about 112 million sequencing reads from the tissues of adult Japanese scallops. These reads were assembled into 194,839 non-redundant sequences with open reading frame (ORF, of which 14,240 putative amino acid sequences were assigned biological function annotation and were annotated with gene ontology and eukaryotic orthologous group terms. In addition, we identified 720 genes involved in response to stimulus and 302 genes involved in immune-response pathways. Furthermore, we investigated the transcriptomic changes in the gill and digestive gland of Japanese scallops following cadmium exposure using a tag-based DGE system. A total of 7,556 and 3,002 differentially expressed genes were detected, respectively, and functionally annotated with KEGG pathway annotations. CONCLUSION: This study provides a comprehensive transcripts sequence resource for the Japanese scallop and presents a survey of gene expression in response to heavy metal exposure in a non-model marine invertebrate via the Illumina sequencing platform. These results may contribute to the in-depth elucidation of the molecular mechanisms involved in bivalve responses to marine pollutants.

  20. Characterization of bacterial communities associating with larval development of Yesso Scallop ( Patinopecten yessoensisis Jay, 1857) by high-throughput sequencing

    Science.gov (United States)

    Sun, Xueying; Liu, Jichen; Li, Ming; Zhao, Xuewei; Liang, Jun; Sun, Pihai; Ma, Yuexin

    2016-12-01

    Bacterial community presumably plays an essential role in inhibiting pathogen colonization and maintaining the health of scallop larvae, but limiting data are available for Yesso scallop ( Patinopecten yessoensisis Jay, 1857) larval development stages. The aim of this study was to characterize and compare the bacterial communities associating with Yesso scallop larval development at fertilized egg S1, trochophora S2, D-shaped larvae S3, umbo larvae S4, and juvenile scallop S5 stages by Illumina high-throughput sequencing. Genomic DNA was extracted from the larvae and their associating bactera, and a gene segment covering V3-V4 region of 16S rRNA gene was amplified and sequenced using an Illumina Miseq sequencer. Overall, 106760 qualified sequences with an average length of 449 bp were obtained. Sequences were compared with those retrieved from 16S rRNA gene databases, and 4 phyla, 7 classes, 15 orders, 21 families, 31 genera were identified. Proteobacteria was predominant phylum, accounting for more than 99%, at all 5 larval development stages. At genus level, Pseudomonas was dominant at stages S1 (80.60%), S2 (87.77%) and S5 (68.71%), followed by Photobacterium (17.06%) and Aeromonas (1.64%) at stage S1, Serratia (6.94%), Stenotrophomonas (3.08%) and Acinetobacter (1.2%) at stage S2, Shewanella (25.95%) and Pseudoalteromonas (4.57%) at stage S5. Moreover, genus Pseudoalteromonas became dominant at stages S3 (44.85%) and S4 (56.02%), followed by Photobacterium (29.82%), Pseudomonas (11.86%), Aliivibrio (8.60%) and Shewanella (3.39%) at stage S3, Pseudomonas (18.16%), Aliivibrio (14.29%), Shewanella (4.11%), Psychromonas (4.04%) and Psychrobacter (1.81%) at stage S4. From the results, we concluded that the bacterial community changed significantly at different development stages of Yesso Scallop larvae.

  1. First record of Cymatium keenae Beu, 1970 (Mollusca: Ranellidae) from Antofagasta Bay, northern Chile, in connection with El Niño events

    Science.gov (United States)

    Ashton, Tom; Riascos, Jose M.; Pacheco, Aldo

    2008-03-01

    Cymatium ( Monoplex) keenae Beu, 1970, the neopolitan triton, is a Ranellidae predator distributed in tropical and subtropical waters. In this study we report this species for the first time in Antofagasta Bay, northern Chile. Adult specimens have been found since June 2003 at depths ranging from 5 to 15 m in La Rinconada Marine Reserve (23°28'18″S, 70°30'46″W) in Antofagasta Bay, near a scallop farming facility. The present findings clearly extend the geographic range of C. keenae, which previously had been reported from La Paz, Gulf of California (Mexico) to Galápagos Islands (Ecuador) in the SE Pacific. Previous evidence strongly suggests that the intrusion of this tropical immigrant can be related to warm El Niño episodes. We analyze the key role of the oceanographic characteristics of Antofagasta Bay as potential temporal refuge for this species.

  2. Biomarker modulation associated with marine diesel contamination in the Iceland scallop (Chlamys islandica).

    Science.gov (United States)

    Milinkovitch, Thomas; Geraudie, Perrine; Camus, Lionel; Huet, Valérie; Thomas-Guyon, Hélène

    2015-12-01

    The decrease of ice cover in the Arctic will lead to an increase of ship traffic in the upcoming decades. Consequently, oil pollution is expected. In this context, the goals of this study were to evaluate the biological impact of marine diesel contamination and, on this basis, to determine analytical tools of interest (biomarkers) for future biomonitoring of diesel spills. Using a 7-day contamination protocol, this study investigated biochemical modulations in the digestive gland of the Iceland scallop (Chlamys islandica). Incorporation of contaminants was verified assessing haemolymph metabolites. Results showed a response of glutathione-S-transferase to contamination suggesting detoxification processes and the suitability of such a tool for diesel spill biomonitoring. The lack of modulation of superoxide dismutase activity and lipid peroxidation suggests no oxidative stress and the unsuitability of these molecular tools for biomonitoring.

  3. Efficacy of scallop shell powders and slaked lime for inactivating avian influenza virus under harsh conditions.

    Science.gov (United States)

    Thammakarn, Chanathip; Tsujimura, Misato; Satoh, Keisuke; Hasegawa, Tomomi; Tamura, Miho; Kawamura, Akinobu; Ishida, Yuki; Suguro, Atsushi; Hakim, Hakimullah; Ruenphet, Sakchai; Takehara, Kazuaki

    2015-10-01

    The efficacy and stability of scallop shell powder (SSP) were investigated, in terms of its capacity to inactivate avian influenza virus (AIV), and compared with slaked lime (SL). An environmental simulation was conducted by emulating sunlight and wet-dry conditions. The powders were collected at consecutive 2-week intervals under sunlight and upon every resuspension. These materials were tested by mixing them with AIV and incubating the mixture for 3 min or 20 h, followed by AIV titration. At the same time, a pH buffering test was conducted by neutralization with Tris-HCl. The results revealed that SSP and SL have high alkalinity and excellent ability to inactivate AIV. In a simulated harsh environment, SSP and SL retained a satisfactory ability to inactivate AIV within 20 h throughout the experimental procedure. However, SSP was able to inactivate AIV during a short contact period (3 min), even under harsh conditions, and it was more resistant than SL to neutralization.

  4. The TEAD/TEF family of transcription factor Scalloped mediates Hippo signaling in organ size control.

    Science.gov (United States)

    Zhang, Lei; Ren, Fangfang; Zhang, Qing; Chen, Yongbin; Wang, Bing; Jiang, Jin

    2008-03-01

    The Hippo (Hpo) signaling pathway governs cell growth, proliferation, and apoptosis by controlling key regulatory genes that execute these processes; however, the transcription factor of the pathway has remained elusive. Here we provide evidence that the TEAD/TEF family transcription factor Scalloped (Sd) acts together with the coactivator Yorkie (Yki) to regulate Hpo pathway-responsive genes. Sd and Yki form a transcriptional complex whose activity is inhibited by Hpo signaling. Sd overexpression enhances, whereas its inactivation suppresses, tissue overgrowth caused by Yki overexpression or tumor suppressor mutations in the Hpo pathway. Inactivation of Sd diminishes Hpo target gene expression and reduces organ size, whereas a constitutively active Sd promotes tissue overgrowth. Sd promotes Yki nuclear localization, whereas Hpo signaling retains Yki in the cytoplasm by phosphorylating Yki at S168. Finally, Sd recruits Yki to the enhancer of the pathway-responsive gene diap1, suggesting that diap1 is a direct transcriptional target of the Hpo pathway.

  5. Fisheries Closed Areas Strengthen Scallop Larval Settlement and Connectivity Among Closed Areas and Across International Open Fishing Grounds: A Model Study

    Science.gov (United States)

    Davies, Kimberley T. A.; Gentleman, W. C.; DiBacco, C.; Johnson, C. L.

    2015-09-01

    This study examined whether a measured increase in average body size of adult sea scallops inside three fishery closed areas on Georges Bank (GB), United States (US), was sufficient to increase larval supply to closed areas and open fishing areas in both US and Canadian areas of the Bank. The effects of adult scallop density-at-size and fecundity-at-size on egg production were compared among open and closed fishery areas, countries, and time periods before and after the closed areas were established. Estimated egg production was then used to define spawning conditions in a coupled biological-physical larval tracking model that simulated larval development, mortality, and dispersal. Results showed that order of magnitude increases in larval settlement after closure were facilitated by increases in size-dependant egg production inside and dispersal from Closed Areas I and II, but not Nantucket Lightship Closed Area. The distributions of both egg production and larval settlement became more uniform across the Bank, causing the relative contribution of Canadian larvae to US scallop aggregations to decrease after establishment of Closed Areas I and II. Decreases in small and medium-sized scallop density in Canada and decreases in large scallops over the US-Southern Flank after closure caused local declines in egg production but were not sufficient to negatively affect larval settlement at the regional scale. Our model suggests that the establishment of fishery closed areas on GB considerably strengthened larval supply and settlement within and among several adult scallop aggregations.

  6. 不同干燥方法对即食扇贝柱理化及感官品质的影响%Effects of different drying methods on physicochemical and sensory characteristics of instant scallop

    Institute of Scientific and Technical Information of China (English)

    李书红; 王颉; 宋春风; 刘亚琼; 郭雪霞

    2011-01-01

    为了解不同干燥方法对即食扇贝柱干燥后品质的影响,以海湾扇贝柱为原料,研究了微波干燥、真空冷冻干燥、自然干燥和烘箱干燥4种方法对即食扇贝柱理化特性和感官品质的影响.结果表明:不同干燥方法所得产品在水分活度、pH值、硬度、咀嚼性和黏聚性方面存在着显著性差异,不同干燥方法对产品的色泽和弹性影响均不显著:烘箱干燥产品感官品评得分8.82分,其氨基酸总量最高,微波干燥氨基酸总量最低;真空冷冻干燥后产品中必需氨基酸和呈味氨基酸含量最高,自然干燥最低.综合考虑,烘箱干燥是即食扇贝柱较适宜的干燥方法,产品感官品质和氨基酸总量较高.较佳的烘箱干燥参数为:80℃干燥2 h.研究结果可以为即食扇贝柱的工业化生产提供参考.%The effects of different drying methods (i.e.microwave drying, vacuum freeze drying, natural drying and oven drying) on the quality of instant scallop were investigated.The bay scallop was chosen as the raw material,furthermore, two significant parameters, the physieochemical properties and sensory characteristics were tested in detail.The results showed that water activity, pH value, hardness, chewiness and cohesiveness of product have significant variation with different drying methods.The statistics results of the color and springiness have no remarkable differences.The sensory score of oven drying product was 8.82.The total amino acids was the highest by oven drying and lowest by microwave drying.The essential amino acids and flavor amino acids were the highest by vacuum freeze drying and lowest by natural drying.It is noteworthy that the sensory score and total amino acids with oven drying were the highest among the methods.The optimal drying method for instant scallop was oven drying.The optimal drying process parameters were as follows: drying temperature was 80℃ and drying time was 2 h.The results can provide references

  7. Response of phytoplankton to multispecies mariculture :a case study on the carrying capacity of shellfish in the Sanggou Bay in China

    Institute of Scientific and Technical Information of China (English)

    GE Changzi; FANG Jianguang; SONG Xiefa; MAO Yuze; YE Naihao

    2008-01-01

    A multispecies model for shellfish polycuhure in the Sanggou Bay in China used for large-scale long-line cultivation of the Chinese scallop Chlamysfarreri,the Pacific oyster Crassostrea gigas and the kelp Laminariajaponica is presented.The model includes key physical processes which are the transports of matter at the system boundary,and the main biological process that is the primary production and nutrients release from the bottom.By the model,the seasonal fluctuations of phytoplankton biomass and dissolved inorganic nitrogen(DIN) in 1994 are simulated.Furthermore,if the kelp culture scale is kept constant and the Chinese scallop and the Pacific oyster culture scales are adjusted,virtual shellfish farms are funded and responses of phytoplankton to the large- scale shellfish culture are simulated.According to these simulated results,the room limitation,and the hypothesis that shellfish will not grow well if the phytoplankton biomass is less than 8.2 mg/m3,the expandable multiple of scallop culture k and that of oyster culture y are determined as k=-0.276 5y+4.690 5 and 0.133 3k+0.006 6y≤0.667 5,where,k (or y) is equal to 1, the culture scale of scallop (or oyster) is 8.8×109 individuals (or 66 ha,with a density of 59 ind./m2),and the kelp culture scale is 3 300 ha with a density of 12 ind./m2.

  8. Electron Paramagnetic Resonance Study of Defects in γ-irradiated Marine Mussel (Mytilus galloprovincialis) and Scallop (Pecten jacobaeus) Shells

    Science.gov (United States)

    Köseoğlu, R.; Köksal, F.; Birey, M.

    2004-11-01

    EPR studies have been performed on some gamma-irradiated marine mussels (Mytilus galloprovincialis) and scallops (Pecten jacobaeus) from the families of Mytilidae and Pectinidae, respectively. Before γ-irradiation, the EPR lines of Mytilus galloprovincialis indicated the existence of Mn2+ ions, which were not observed in the powders of scallop shells. γ -irradiation induced defects in powders of Mytilus galloprovincialis shells, were attributed to orthorhombic CO-3 , axial CO3-3 , orthorhombic CO-2 , freely rotating CO-2 , freely rotating SO-2 , axial SO-3 , isotropic PO2-4 and organic free radicals. γ -irradiation induced defects in powders of Pecten jacobaeus shells were attributed to orthorhombic CO-3 , axial CO3-3 , orthorhombic CO-2 , freely rotating CO-2 , freely rotating SO-2 , and axial SO-3 free radicals. The EPR parameters of the free radicals were compared with literature data on similar defects

  9. Ecological effects of co-culturing sea cucumber Apostichopus japonicus (Selenka) with scallop Chlamys farreri in earthen ponds

    Science.gov (United States)

    Ren, Yichao; Dong, Shuanglin; Qin, Chuanxin; Wang, Fang; Tian, Xiangli; Gao, Qinfeng

    2012-01-01

    Monthly changes in sedimentation and sediment properties were studied for three different culture treatments: sea cucumber monoculture (Mc), sea cucumber and scallop polyculture (Ps-c) and scallop monoculture (Ms). Results indicated that the survival rate of sea cucumber was significantly higher in Ps-c cultures than in Mc cultures. Sea cucumber yield was 69.6% higher in Ps-c culture than in Mc culture. No significant differences in body weight and scallop shell length were found between Ps-c and Ms cultures. The mean sedimentation rate of total particulate matter (TPM) was 72.2 g/(m2·d) in Ps-c cultures, with a maximum of 119.7 g/(m2·d), which was markedly higher than that of Mc (mean value). Sedimentation rates of organic matter (OM), total organic carbon (TOC), total nitrogen (TN) and total phosphorus (TP) in Ps-c cultures were also significantly higher than those in Mc cultures. TOC and TN contents of sediment increased rapidly in the first 5 months in Ms cultures and remained at a high level. TOC and TN contents in Mc and Ps-c cultures decreased during sea cucumber feeding seasons and increased during sea cucumber dormancy periods (summer and winter). The study demonstrates that co-culture of sea cucumber and scallop in earthen ponds is an alternative way to alleviate nutrient loads and improve water quality in coastal aquaculture systems. Moreover, it provides the additional benefit of an increased sea cucumber yield.

  10. Ecological effects of co-culturing sea cucumber Apostichopus japonicus (Selenka) with scallop Chlamys farreri in earthen ponds

    Institute of Scientific and Technical Information of China (English)

    REN Yichao; DONG Shuanglin; QIN Chuanxin; WANG Fang; TIAN Xiangli; GAO Qinfeng

    2012-01-01

    Monthly changes in sedimentation and sediment properties were studied for three different culture treatments:sea cucumber monoculture (Mc),sea cucumber and scallop polyculture (Ps-c) and scallop monoculture (Ms).Results indicated that the survival rate of sea cucumber was significantly higher in Ps-c cultures than in Mc cultures.Sea cucumber yield was 69.6% higher in Ps-c culture than in Mc culture.No significant differences in body weight and scallop shell length were found between Ps-c and Ms cultures.The mean sedimentation rate of total particulate matter (TPM) was 72.2 g/(m2.d) in Ps-c cultures,with a maximum of 119.7 g/(m2.d),which was markedly higher than that of Mc (mean value).Sedimentation rates of organic matter (OM),total organic carbon (TOC),total nitrogen (TN) and total phosphorus (TP) in Ps-c cultures were also significantly higher than those in Mc cultures.TOC and TN contents of sediment increased rapidly in the first 5 months in Ms cultures and remained at a high level.TOC and TN contents in Mc and Ps-c cultures decreased during sea cucumber feeding seasons and increased during sea cucumber dormancy periods (summer and winter).The study demonstrates that co-culture of sea cucumber and scallop in earthen ponds is an alternative way to alleviate nutrient loads and improve water quality in coastal aquaculture systems.Moreover,it provides the additional benefit of an increased sea cucumber yield.

  11. Regional variation in undulatory kinematics of two hammerhead species: the bonnethead (Sphyrna tiburo) and the scalloped hammerhead (Sphyrna lewini).

    Science.gov (United States)

    Hoffmann, Sarah L; Warren, Steven M; Porter, Marianne E

    2017-09-15

    Hammerhead sharks (Sphyrnidae) exhibit a large amount of morphological variation within the family, making them the focus of many studies. The size of the laterally expanded head, or cephalofoil, is inversely correlated with pectoral fin area. The inverse relationship between cephalofoil and pectoral fin size in this family suggests that they might serve a complementary role in lift generation. The cephalofoil is also hypothesized to increase olfaction, electroreception and vision; however, little is known about how morphological variation impacts post-cranial swimming kinematics. Previous studies demonstrate that the bonnethead and scalloped hammerhead have significantly different yaw amplitude, and we hypothesized that these species utilize varied frequency and amplitude of undulation along the body. We analyzed video of free-swimming sharks to examine kinematics and 2D morphological variables of the bonnethead and scalloped hammerhead. We also examined the second moment of area along the length of the body and over a size range of animals to determine whether there were shape differences along the body of these species and whether those changed over ontogeny. We found that both species swim with the same standardized velocity and Strouhal number, but there was no correlation between two-dimensional morphology and swimming kinematics. However, the bonnethead has a dorso-ventrally compressed anterior trunk and undulates with greater amplitude, whereas the scalloped hammerhead has a laterally compressed anterior trunk and undulates with lower amplitude. We propose that differences in cross-sectional trunk morphology account for interspecific differences in undulatory amplitude. We also found that for both species, undulatory frequency is significantly greater in the anterior body compared with all other body regions. We hypothesize that the bonnethead and scalloped hammerhead swim with a double oscillation system. © 2017. Published by The Company of Biologists Ltd.

  12. CASCO BAY PLAN

    Science.gov (United States)

    Casco Bay lies at the heart of Maine's most populated area. The health of its waters, wetlands, and wildlife depend in large part on the activities of the quarter-million residents who live in its watershed. Less than 30 years ago, portions of Casco Bay were off-limits to recr...

  13. eBay.com

    DEFF Research Database (Denmark)

    Engholm, Ida

    2014-01-01

    Celebrated as one of the leading and most valuable brands in the world, eBay has acquired iconic status on par with century-old brands such as Coca-Cola and Disney. The eBay logo is now synonymous with the world’s leading online auction website, and its design is associated with the company...

  14. Apoptosis of hemocytes from lions-paw scallop Nodipecten subnodosus induced with paralyzing shellfish poison from Gymnodinium catenatum.

    Science.gov (United States)

    Estrada, Norma; Ascencio, Felipe; Shoshani, Liora; Contreras, Rubén G

    2014-12-01

    The toxic dinoflagellate Gymnodinium catenatum produces paralyzing shellfish poisons (PSPs) that are consumed and accumulated by bivalves. Previously, we recorded a decrease in hemocytes 24h after injection of PSPs (gonyautoxin 2/3 epimers, GTX2/3) in the adductor muscle in the lions-paw scallop Nodipecten subnodosus. In this work, qualitative and quantitative analyses, in in vivo and in vitro experiments, revealed that the lower count of hemocytes results from cells undergoing typical apoptosis when exposed to GTX 2/3 epimers. This includes visible morphological alterations of the cytoplasmic membrane, damage to the nuclear membrane, condensation of chromatin, DNA fragmentation, and release of DNA fragments into the cytoplasm. Induction of apoptosis was accompanied by phosphatidylserine exposure to the outer cell membrane and activation of cysteine-aspartic proteases, caspase 3 and caspase 8. Addition of an inhibitor of caspase to the medium suppressed activation in hemocytes exposed to the toxins, suggesting that cell death was induced by a caspase-dependent apoptotic pathway. The results are important for future investigation of the scallop's immune system and should provide new insights into apoptotic processes in immune cells of scallops exposed to PSPs. Copyright © 2014 Elsevier GmbH. All rights reserved.

  15. A Feasibility Study of Off-the-Shelf Scalloped Stent-Grafts in Acute Type B Aortic Dissection.

    Science.gov (United States)

    van der Weijde, Emma; Bakker, Olaf J; Kamman, Arnoud V; van Herwaarden, Joost A; Trimarchi, Santi; Vos, Jan Albert; Heijmen, Robin H

    2017-08-01

    To evaluate the applicability of an off-the-shelf scalloped stent-graft to preserve left subclavian artery (LSA) flow in thoracic endovascular aortic repair (TEVAR) for acute type B aortic dissection. The computed tomography angiograms (CTA) of 70 consecutive patients (median age 64 years; 44 men) with acute Stanford type B aortic dissection were retrospectively analyzed to identify patients in whom a short proximal landing zone (shelf scalloped stent-graft would have been applicable in 23 (41%) patients. In the latter group, the median aortic diameter was 31 mm (range 26-37), the median length of the LSA ostium was 13 mm (range 10-20), and the median width of the LSA ostium was 15 mm (range 11-24). Three differently sized off-the-shelf stent-grafts with the largest scallop possible could have adequately treated 20 (36%) of the 56 patients in the acute phase. In this single-center imaging-based study, involvement of the LSA in the setting of acute type B aortic dissection was seen in 80% of patients treated with TEVAR. Three off-the-shelf stent-grafts would suffice to treat one-third of these acute type B aortic dissections and may offer a relatively simple solution to preserve LSA flow, thereby lowering the risk of malperfusion of the (posterior) cerebrum, spinal cord, and left arm in an urgent/emergent setting.

  16. The phylogeny of native and exotic scallops cultured in China based on 16S rDNA sequences

    Institute of Scientific and Technical Information of China (English)

    LIU Baozhong; DONG Bo; XIANG Jianhai; WANG Zaizhao

    2007-01-01

    Scallops of the Family Pectinidae are a valuable resource in marine industry of the world.Understanding the phylogeny of the family is important for the development of the industry. In this study,partial 16S mitochondrial rDNA genes were obtained from 8 scallop species that are commonly cultured indigenous and transplanted species in China. Phylogenetic relationships of Pectinidae were analyzed based on the 8 sequences and other 5 published ones in GenBank, representing 9 genera of the family. The molecular phylogeny trees were constructed using 3 methods with software PHYLIP. The results showe that total 13 species of scallops clustered in 4 clades. Pecten maximus joins P. jacobaeus then Amusium pleuronectes in cluster, indicating close relationship of genus Amusium with Pecten in evolution. P. yessoensis is close to Chlamysfarreri and C. islandica. No enough material was available to single out genus Patinopecten as an independent monophyletic subfamily. The position ofAdamussium colbecki indicates that it is far from genus Pecten but near to genus Chlamys in evolution.

  17. A simple method to reduce the risk of cadmium exposure from consumption of Iceland scallops (Chlamys islandica) fished in Greenland.

    Science.gov (United States)

    Bach, Lis; Sonne, Christian; Rigét, Frank F; Dietz, Rune; Asmund, Gert

    2014-08-01

    This paper studied the levels and organ distribution of the toxic heavy metal cadmium in scallops from unpolluted Greenlandic waters. The scallops had an average cadmium concentration of 2.93 ± 0.94 μg/g wet weight in the total soft tissues and no concentration dependent effect was found for gender or size (both p>0.05). The kidney was the primary organ for cadmium accumulation with a mean of 226.2 ± 111.7 μg/g wet weight, and despite the small weight of the kidney, it appeared as the principal contributor of cadmium with 92% of the total cadmium body burden. The cadmium concentrations in the total soft tissues far exceeded the EU-limit of 1 μg/g wet weight for cadmium in bivalves. Based on this, selective evisceration of the cadmium-rich kidney and digestive gland during processing can be regarded as a reliable measure to be taken in order to reduce the cadmium content of scallops used for human consumption.

  18. Microsatellite-centromere mapping in Japanese scallop ( Patinopecten yessoensis) through half-tetrad analysis in gynogenetic diploid families

    Science.gov (United States)

    Li, Qi; Qi, Mingjun; Nie, Hongtao; Kong, Lingfeng; Yu, Hong

    2016-06-01

    Gene-centromere mapping is an essential prerequisite for understanding the composition and structure of genomes. Half-tetrad analysis is a powerful tool for mapping genes and understanding chromosomal behavior during meiosis. The Japanese scallop ( Patinopecten yessoensis), a cold-tolerant species inhabiting the northwestern Pacific coast, is a commercially important marine bivalve in Asian countries. In this study, inheritance of 32 informative microsatellite loci was examined in 70-h D-shaped larvae of three induced meiogynogenetic diploid families of P. yessoensis for centromere mapping using half-tetrad analysis. The ratio of gynogenetic diploids was proven to be 100%, 100% and 96% in the three families, respectively. Inheritance analysis in the control crosses showed that 51 of the 53 genotypic ratios observed were in accordance with Mendelian expectations at the 5% level after Bonferroni correction. Seven of the 32 microsatellite loci showed the existence of null alleles in control crosses. The second division segregation frequency ( y) of the microsatellite loci ranged from 0.07 to 0.85 with a mean of 0.38, suggesting the existence of positive interference after a single chiasma formation in some chromosomes in the scallop. Microsatellite-centromere distances ranged from 4 cM to 42 cM under the assumption of complete interference. Information on the positions of centromeres in relation to the microsatellite loci will represent a contribution towards the assembly of genetic maps in the commercially important scallop species.

  19. Genetic Differentiation between Natural and Hatchery Stocks of Japanese Scallop (Mizuhopecten yessoensis as Revealed by AFLP Analysis

    Directory of Open Access Journals (Sweden)

    Zhan-Jiang Liu

    2010-10-01

    Full Text Available Japanese scallop (Mizuhopecten yessoensis is a cold-tolerant bivalve that was introduced to China for aquaculture in 1982. In this study, amplified fragment length polymorphism (AFLP markers were used to investigate levels of genetic diversity within M. yessoensis cultured stocks and compare them with wild populations. Six pairs of primer combinations generated 368 loci among 332 individuals, in four cultured and three wild populations. High polymorphism at AFLP markers was found within both cultured and wild M. yessoensis populations. The percentage of polymorphic loci ranged from 61.04% to 72.08%, while the mean heterozygosity ranged from 0.2116 to 0.2596. Compared with wild populations, the four hatchery populations showed significant genetic changes, such as lower expected heterozygosity and percentage of polymorphic loci, and smaller frequency of private alleles, all indicative of a reduction in genetic diversity. Some genetic structures were associated with the geographical distribution of samples; with all samples from Dalian and Japan being closely related, while the population from Russia fell into a distinct clade in the phylogenetic analysis. The genetic information derived from this study indicated that intentional or accidental release of selected Japanese scallops into natural sea areas might result in disturbance of local gene pools and loss of genetic variability. We recommend monitoring the genetic variability of selected hatchery populations to enhance conservation of natural Japanese scallop resources.

  20. Biodiversity and dynamics of the bacterial community of packaged king scallop (Pecten maximus) meat during cold storage.

    Science.gov (United States)

    Coton, M; Joffraud, J J; Mekhtiche, L; Leroi, F; Coton, E

    2013-09-01

    The microbial biodiversity and dynamics of king scallops meat and coral during cold storage (cold chain rupture: 1/3 storage time at 4 °C followed by 2/3 at 8 °C), was assessed by combining culture-dependant and -independent methods. Products were packaged as follows: aerobic, vacuum packed and 3 different CO2/N2 modified atmospheres and the impact of these conditions on the microbial communities was assessed. Results indicated that under air (current packaging condition), the dominant species corresponded to Brochothrix thermosphacta, Pseudomonas spp. and Shewanella spp. These species have regularly been associated in the literature with food (especially seafood), and product spoilage. Moellerella wisconsensis was the only species detected on VRBG medium, however, its impact on the food product is unclear. Packaging conditions influenced the ecosystem equilibrium and biodiversity. Except for day 8, the lowest counts for all studied flora were observed for modified atmosphere packaging (MAP) containing >80% CO2. Moreover, in these conditions, higher biodiversity by Temporal Temperature Gradient Gel Electrophoresis (TTGE) and the non-detection of specific flora (i.e. Pseudoalteromonas haloplanktis) were observed. At day 8, scallops packaged using these conditions were still acceptable from a sensorial point of view (odour), although the initial load of the king scallop was high (total psychrotrophic flora reached 5.5 log CFU/g).

  1. 四十里湾海洋贝类对氨基脲的生物富集特性%Semicarbazide bioaccumulation in seashells of Sishili Bay

    Institute of Scientific and Technical Information of China (English)

    于召强; 徐英江; 田秀慧; 刘义豪; 宋秀凯; 任传博; 黄会; 刘云; 张利民

    2013-01-01

    采用超高效液相色谱-串联质谱法对四十里湾海域(设置马山寨和石沟屯两个取样点)海水及贻贝Mytilus edulis、海湾扇贝Argopecten irradias、栉孔扇贝Chlamys gloriosa和牡蛎Ostrea gigas thunberg等贝类样品中氨基脲含量分别进行检测.本方法氨基脲的线性范围为0.5 μg/L~20.0 μg/L,相关系数大于0.99.该研究所得的结果可为四十里湾海域贝类氨基脲污染的净化提供数据支持.%Semicarbazide (SEM) in Mytilus edulis ,Argopecten irradias ,Chlamys gloriosa ,Ostrea gigas thunberg and seawater of Sishili Bay (sampling spots were Mashanzhai and Shigoutun) was determined using ultra performance liquid chromatogram tandem mass spectrometry (UPLC-MS/MS) in this work. UPLC and MS/MS analytical conditions were examined and optimized critically by a series of experiments. Samples were extracted and the residue was separated by ACQUITYTM UPLC BEH C18 column (1.7 μm,2. 1 mm I. D.×100 mm) using gradient elution separation. Mobile phase was A (methanol) and B (5 mmol/L of ammonium acetate containing 0.1% formic acid). Finally analyte was confirmed and quantified using MS/MS system in multiple reaction mode with triple Quad-rapole analyzer using positive polarity mode. The SEM showed good linearity in the range of 0. 5 g/L to 20. 0 g/L with correlation coefficient greater than 0. 99. The study can make deeper understanding of SEM residues and distribution in different seashells. It can also provide dynamic dada and basis for guarantee health for people, continuous growth of fishing industry and government-based management and decision. The study can also provide useful information for studying decontamination of seashells that have SEM contamination in Sishili Bay.

  2. A small-scale comparison of Iceland scallop size distributions obtained from a camera based autonomous underwater vehicle and dredge survey.

    Science.gov (United States)

    Singh, Warsha; Örnólfsdóttir, Erla B; Stefansson, Gunnar

    2014-01-01

    An approach is developed to estimate size of Iceland scallop shells from AUV photos. A small-scale camera based AUV survey of Iceland scallops was conducted at a defined site off West Iceland. Prior to height estimation of the identified shells, the distortions introduced by the vehicle orientation and the camera lens were corrected. The average AUV pitch and roll was 1.3 and 2.3 deg that resulted in <2% error in ground distance rendering these effects negligible. A quadratic polynomial model was identified for lens distortion correction. This model successfully predicted a theoretical grid from a frame photographed underwater, representing the inherent lens distortion. The predicted shell heights were scaled for the distance from the bottom at which the photos were taken. This approach was validated by height estimation of scallops of known sizes. An underestimation of approximately 0.5 cm was seen, which could be attributed to pixel error, where each pixel represented 0.24 x 0.27 cm. After correcting for this difference the estimated heights ranged from 3.8-9.3 cm. A comparison of the height-distribution from a small-scale dredge survey carried out in the vicinity showed non-overlapping peaks in size distribution, with scallops of a broader size range visible in the AUV survey. Further investigations are necessary to evaluate any underlying bias and to validate how representative these surveys are of the true population. The low resolution images made identification of smaller scallops difficult. Overall, the observations of very few small scallops in both surveys could be attributed to low recruitment levels in the recent years due to the known scallop parasite outbreak in the region.

  3. A small-scale comparison of Iceland scallop size distributions obtained from a camera based autonomous underwater vehicle and dredge survey.

    Directory of Open Access Journals (Sweden)

    Warsha Singh

    Full Text Available An approach is developed to estimate size of Iceland scallop shells from AUV photos. A small-scale camera based AUV survey of Iceland scallops was conducted at a defined site off West Iceland. Prior to height estimation of the identified shells, the distortions introduced by the vehicle orientation and the camera lens were corrected. The average AUV pitch and roll was 1.3 and 2.3 deg that resulted in <2% error in ground distance rendering these effects negligible. A quadratic polynomial model was identified for lens distortion correction. This model successfully predicted a theoretical grid from a frame photographed underwater, representing the inherent lens distortion. The predicted shell heights were scaled for the distance from the bottom at which the photos were taken. This approach was validated by height estimation of scallops of known sizes. An underestimation of approximately 0.5 cm was seen, which could be attributed to pixel error, where each pixel represented 0.24 x 0.27 cm. After correcting for this difference the estimated heights ranged from 3.8-9.3 cm. A comparison of the height-distribution from a small-scale dredge survey carried out in the vicinity showed non-overlapping peaks in size distribution, with scallops of a broader size range visible in the AUV survey. Further investigations are necessary to evaluate any underlying bias and to validate how representative these surveys are of the true population. The low resolution images made identification of smaller scallops difficult. Overall, the observations of very few small scallops in both surveys could be attributed to low recruitment levels in the recent years due to the known scallop parasite outbreak in the region.

  4. ABSTRACTS AND KEY WORDS

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Study on the Long-distance Transportation of Argopecten irridians concentricus ShenQin-long(1) Abstract The experiment was carried out in order to improve the survival rate of the scallop. The result indicated that keeping the water temperature at 4℃ was reasonable for the long-distance transportation of the scallop with oxygenated bags.

  5. Monoamine fluctuations during the reproductive cycle of the Pacific lion's paw scallop Nodipecten subnodosus.

    Science.gov (United States)

    López-Sánchez, J Armando; Maeda-Martínez, Alfonso N; Croll, Roger P; Acosta-Salmón, Héctor

    2009-11-01

    The Pacific lion's paw scallop Nodipecten subnodosus has been one of the most important commercial species of mollusc in the Baja California peninsula in Mexico since 1990. This species is a functional hermaphrodite with tropical and sub-tropical distributions and experiences wide annual temperature oscillations influencing its physiological functions. We determined norepinephrine (NE), dopamine (DA), and serotonin (5-HT) concentrations in different organs (female and male gonads, digestive gland, adductor muscle, gill, mantle, and foot) of N. subnodosus, at 6 reproductive stages (resting, initial, maturing, mature, partially spent and fully spent). Monoamine concentrations were determined by HPLC fitted with an electrochemical detector. Results indicated that monoamine concentrations increased during maturing stage, peaked at mature stage and declined after spawning. NE concentrations were higher than the rest of monoamines followed by DA, and 5-HT. NE was present in all organs at all reproductive stages. DA concentrations were higher in the gill and digestive gland during all stages. 5-HT was only detectable in the male gonadic portion at all stages except at spent stage. NE was the most abundant neurotransmitter found in the female gonad of N. subnodosus, while 5-HT was the most abundant neurotransmitter found in the male gonad. Furthermore, these two neurotransmitters accumulated in the respective gonad tissues during the initial reproductive stages I to IV and then declined after spawning (stages V and VI). This suggests that this species utilized different neurotransmitters specific for each gender and that this utilization was related to the reproductive cycle.

  6. Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus).

    Science.gov (United States)

    Delghandi, M; Goddard, S; Jerry, D R; Dao, H T; Afzal, H; Al-Jardani, S S

    2015-12-29

    Of the various spiny lobster species in the tropical and subtropical Indo-West Pacific region, the tropical scalloped spiny lobster (Panulirus homarus) supports one of the most commercially valuable fishery resources in many coastal African and Asian countries. The last decade has witnessed a serious decline in the wild populations of this species. Knowledge of the genetic basis of spiny lobster population structure is a prerequisite to achieve a sustainable fisheries management for this species. Here, we describe 13 novel polymorphic microsatellite markers developed for P. homarus, using a cross-species primer design strategy based on P. ornatus Roche 454 shot-gun generated sequencing. Microsatellite polymorphisms were assessed in 96 unrelated P. homarus individuals of a natural population, with the number of alleles per locus varying from 2 to 14, the observed and expected heterozygosity from 0.00 to 0.78 and from 0.03 to 0.79, respectively, and with only four loci (Pho-G27, Pho-G32, Pho-G36, and Pho-G58) deviating from Hardy- Weinberg equilibrium. Genetic linkage disequilibrium analysis between all pairs of the loci showed significant departure from the null hypothesis between loci Pho-G22 - Pho-G30, and Pho-G30 - Pho-G35. The successful cross amplification of these microsatellites highlights the potential of the developed microsatellites for future population genetic research within the different Panulirus species.

  7. Sperm nuclear expansion and meiotic maturation in normal and gynogenetic eggs of the scallop, Chlamys farreri

    Science.gov (United States)

    Pan, Ying; Li, Qi; Yu, Ruihai; Wang, Rucai

    2008-02-01

    Sperm nuclear expansion, meiosis and the association of the male and female pronuclei leading to the four-cell stage in normal Chlamys farreri eggs were observed under a fluorescence microscope. The effects of ultraviolet (UV) irradiation on the fertilizing sperm were also examined. Both normal and UV-irradiated sperm nuclei enlarged at three distinct phases (phase A, metaphase I; phase B, polar body formation; and phase C, female pronuclear development and expansion) that were temporally correlated with meiotic process of the maternal chromosomes. Sperm nuclei underwent a rapid, initial enlargement during phase A, but condensed slightly during phase B, then re-enlarged during phase C. The effects of UV irradiation were not apparent during transformation of the sperm nucleus into a male pronucleus, and there was not any apparent effect on meiotic maturation and development of the female pronucleus. However, the rate of expansion of the UV-irradiated sperm nuclei and the size of male pronuclei were reduced apparently. Unlike the female pronucleus, the male pronucleus derived from sperm genome inactivated by UV irradiation did not form chromosomes, but became a dense chromatin body (DCB). At mitotic anaphase, DCB did not participate in the karyokinesis of the first cleavage as evidenced by chromosomal nondisjunction, demonstrating the effectiveness of using UV irradiation to induce gynogenetic scallop embryos.

  8. Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae).

    Science.gov (United States)

    Alejandrino, Alvin; Puslednik, Louise; Serb, Jeanne M

    2011-06-14

    We employed a phylogenetic framework to identify patterns of life habit evolution in the marine bivalve family Pectinidae. Specifically, we examined the number of independent origins of each life habit and distinguished between convergent and parallel trajectories of life habit evolution using ancestral state estimation. We also investigated whether ancestral character states influence the frequency or type of evolutionary trajectories. We determined that temporary attachment to substrata by byssal threads is the most likely ancestral condition for the Pectinidae, with subsequent transitions to the five remaining habit types. Nearly all transitions between life habit classes were repeated in our phylogeny and the majority of these transitions were the result of parallel evolution from byssate ancestors. Convergent evolution also occurred within the Pectinidae and produced two additional gliding clades and two recessing lineages. Furthermore, our analysis indicates that byssal attaching gave rise to significantly more of the transitions than any other life habit and that the cementing and nestling classes are only represented as evolutionary outcomes in our phylogeny, never as progenitor states. Collectively, our results illustrate that both convergence and parallelism generated repeated life habit states in the scallops. Bias in the types of habit transitions observed may indicate constraints due to physical or ontogenetic limitations of particular phenotypes.

  9. Expression pattern of phb2 and its potential function in spermatogenesis of scallop ( Chlamys farreri)

    Science.gov (United States)

    Han, Tiantian; Ma, Xiaoshi; Liang, Shaoshuai; Gao, Beibei; Zhang, Zhifeng

    2015-12-01

    Prohibitin (PHB) participates in several biological processes including apoptosis, transcription regulation and suppression of cell proliferation in mammals. In this study, we cloned the full-length cDNA of prohibitin 2 ( Cf-phb2) from the testis of scallop ( Chlamys farreri). The deduced amino acid sequence presented a characteristic of PHB family with the PHB domain, and clustered with PHB2 of other species. Temporal and spatial expression of Cf-phb2 in testis during the reproductive cycle was detected by quantitative real-time PCR (qRT-PCR) and in situ hybridization. The expression of Cf-phb2 in the testis increased when testis developed from the resting stage to mature stage. The mRNA abundance of Cf-phb2 was the highest at mature stage, which was about 15-fold higher than that at proliferative stage. The expression of Cf-phb2 could be detected by in situ hybridization in all types of germ cells in testis, including spermatogonia, spermatocytes, spermatids and spermatozoa. The intensity of the signal increased with the spermatogenesis and was the highest in spermatids, which suggested that CF-PHB2 might affect the spermatogenesis of C. farreri.

  10. Sperm Nuclear Expansion and Meiotic Maturation in Normal and Gynogenetic Eggs of the Scallop, Chlamys farreri

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Sperm nuclear expansion, meiosis and the association of the male and female pronuclei leading to the four-cell stage in normal Chlamys farreri eggs were observed under a fluorescence microscope. The effects of ultraviolet (UV) irradiation on the fertilizing sperm were also examined. Both normal and UV-irradiated sperm nuclei enlarged at three distinct phases (phase A, metaphase Ⅰ; phase B, polar body formation; and phase C, female pronuclear development and expansion) that were temporally correlated with meiotic process of the maternal chromosomes. Sperm nuclei underwent a rapid, initial enlargement during phase A, but condensed slightly during phase B, then re-enlarged during phase C. The effects of UV irradiation were not apparent during transformation of the sperm nucleus into a male pronucleus, and there was not any apparent effect on meiotic maturation and development of the female pronucleus. However, the rate of expansion of the UV-irradiated sperm nuclei and the size of male pronuclei were reduced apparently. Unlike the female pronucleus, the male pronucleus derived from sperm genome inactivated by UV irradiation did not form chromosomes, but became a dense chromatin body (DCB). At mitotic anaphase, DCB did not participate in the karyokinesis of the first cleavage as evidenced by chromosomal nondisjunction, demonstrating the effectiveness of using UV irradiation to induce gynogenetic scallop embryos.

  11. Adaptive scallop height tool path generation for robot-based incremental sheet metal forming

    Science.gov (United States)

    Seim, Patrick; Möllensiep, Dennis; Störkle, Denis Daniel; Thyssen, Lars; Kuhlenkötter, Bernd

    2016-10-01

    Incremental sheet metal forming is an emerging process for the production of individualized products or prototypes in low batch sizes and with short times to market. In these processes, the desired shape is produced by the incremental inward motion of the workpiece-independent forming tool in depth direction and its movement along the contour in lateral direction. Based on this shape production, the tool path generation is a key factor on e.g. the resulting geometric accuracy, the resulting surface quality, and the working time. This paper presents an innovative tool path generation based on a commercial milling CAM package considering the surface quality and working time. This approach offers the ability to define a specific scallop height as an indicator of the surface quality for specific faces of a component. Moreover, it decreases the required working time for the production of the entire component compared to the use of a commercial software package without this adaptive approach. Different forming experiments have been performed to verify the newly developed tool path generation. Mainly, this approach serves to solve the existing conflict of combining the working time and the surface quality within the process of incremental sheet metal forming.

  12. Ingestion of Domoic Acid and Its Impact on King Scallop(Pecten maximus,Linnaeus 1758)

    Institute of Scientific and Technical Information of China (English)

    LIU Hui; Maeve S. Kelly; Dirk A. Campbell; DONG Shuanglin; ZHU Jianxin; WANG Sufeng

    2007-01-01

    A simple method for spiking formulated feed with domoic acid (DA) was developed in this study. DA feed was prepared by mixing 0.15 mL 100 μg mL-1 DA with 0.1 g formulated feed, and drying the mixture at room temperature for 2 h. The prepared DA feed contained 0.19 pg DA per particle. Of the added DA, 46.72% was retained in the feed. Relatively high DA retention (about 50%) was recorded after DA feed was soaked in water for 2h. Exposure to DA feed for 7d did not cause the increase of tissue DA level of adult king scallop (Pecten maximus) significantly in 60 d. The increase of their gonad index after DA exposure was not significantly different from the control. No significant change in DA level was found in spermary, ovary or fertilized eggs after DA exposure. These results indicated that DA excretion may be more efficient than DA accumulation under the current experimental conditions, and the mechanism of domoic acid incorporation in P. maximus may involve intracellular biotransformation.

  13. Biscayne Bay Alongshore Epifauna

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Field studies to characterize the alongshore epifauna (shrimp, crabs, echinoderms, and small fishes) along the western shore of southern Biscayne Bay were started in...

  14. Bathymetry in Jobos Bay

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This image represents a 4x4 meter resolution bathymetric surface for Jobos Bay, Puerto Rico (in NAD83 UTM 19 North). The depth values are in meters referenced to the...

  15. Hammond Bay Biological Station

    Data.gov (United States)

    Federal Laboratory Consortium — Hammond Bay Biological Station (HBBS), located near Millersburg, Michigan, is a field station of the USGS Great Lakes Science Center (GLSC). HBBS was established by...

  16. Chesapeake Bay Tributary Strategies

    Science.gov (United States)

    Chesapeake Bay Tributary Strategies were developed by the seven watershed jurisdictions and outlined the river basin-specific implementation activities to reduce nutrient and sediment pollutant loads from point and nonpoint sources.

  17. Humboldt Bay Orthoimages

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This data set consists of 0.5-meter pixel resolution, four band orthoimages covering the Humboldt Bay area. An orthoimage is remotely sensed image data in which...

  18. eBay.com

    DEFF Research Database (Denmark)

    Engholm, Ida

    2014-01-01

    Celebrated as one of the leading and most valuable brands in the world, eBay has acquired iconic status on par with century-old brands such as Coca-Cola and Disney. The eBay logo is now synonymous with the world’s leading online auction website, and its design is associated with the company......’s purpose: selling millions of goods, some of which are ‘designer’ items and some of which are considered design icons....

  19. Effects of anthracene and UV-B radiation on larvae of Argopecten irradians%蒽和UV-B辐射增强对海湾扇贝早期发育的影响

    Institute of Scientific and Technical Information of China (English)

    谭海丽; 王玉堃; 唐学玺; 周斌; 王其翔; 王悠

    2013-01-01

    The effects of anthracene and UV-B radiation on the early stage embryos development of benthos, and the single and joint a-cute toxicological effects of anthracene and UV-B radiation on the trochophore and D larvae of Argopecten irradians under the controlled laboratory conditions were studied. The results showed that with the increase of time and the anthracenes concentration or the increase of days and radiation does, the liabilities of the trochophore and D larvae declined. With the combination of anthracene and UV-B radiation , the liabilities of trochophore and D larvae were lower than those in the single action. Compared to D larvae, the trochophore was more sensitive to anthracene and UV-B radiation.%为了探讨蒽和UV-B辐射对底栖生物早期发育的影响,在实验生态学的条件下,选择海湾扇贝(Argopecten irradians)担轮幼虫和D型幼虫作为受试生物进行单一和联合急性毒性试验.结果表明:在实验的蒽浓度和UV-B辐射剂量下,随着蒽浓度和作用时间的增加,海湾扇贝担轮幼虫和D型幼虫的存活率逐渐降低;随着UV-B辐射剂量和辐射天数的增加,海湾扇贝担轮幼虫和D型幼虫存活率下降;在蒽和UV-B辐射共同作用对担轮幼虫和D型幼虫处理时,其两个发育阶段的存活率较两者单独作用的存活率均低很多;担轮幼虫较D型幼虫对蒽和UV-B辐射更敏感.

  20. Application of SSH and quantitative real time PCR to construction of gene expression profiles from scallop Chlamys farreri in response to exposure to tetrabromobisphenol A.

    Science.gov (United States)

    Gong, Xiaoli; Pan, Luqing; Miao, Jingjing; Liu, Na

    2012-11-01

    TBBPA-induced genes were identified using suppression subtractive hybridization (SSH) from Chlamys farreri. A total of 203 and 44 clones from SSH forward and reverse library were respectively obtained including cellular process, immune system process, response to stimulus, metabolic process and signaling etc. Differential gene expressions were compared between scallops from control and TBBPA treatment groups (400 μg/L, 15 days) using quantitative real time RT-PCR. For further research, eight significant genes expression from scallops exposed to TBBPA (0; 100; 200; 400 μg/L) sampling at 0, 1, 3, 6 and 15 days, were utilized for Q-RT-PCR. The results revealed that the expression level of most selected cDNAs was dominantly up-regulated or down-regulated in the TBBPA-induced scallops. These findings provide basic genomic information of the bivalve and the selected genes may be the potential molecular biomarkers for TBBPA pollution in aquatic environment.

  1. Potentially toxic filamentous fungi associated to the economically important Nodipecten nodosus (Linnaeus, 1758) scallop farmed in southeastern Rio de Janeiro, Brazil.

    Science.gov (United States)

    Santos, Antônia; Hauser-Davis, Rachel Ann; Santos, Manoel José Soares; De Simone, Salvatore Giovani

    2017-02-15

    Numerous countries have been confronted with infectious diseases in mariculture activities, including fungi infections, although reports in scallops are scarce. Thus, this study aimed to investigate the occurrence of filamentous fungi in Nodipecten nodosus specimens from three marine farms in Southeastern Brazil. Eight fungi genera were observed in the branchial arches, intestine and muscle tissue of the scallop specimens. These include potentially toxin-producing species, such as Aspergillus, Penicillium and Fusarium. Their presence may lead to potential public health concerns, since all sampling sites showed the presence of fungi in all scallop organs, with special concern regarding edible muscle tissue. A significant number of species was observed at one of the study areas, which could indicate a previously unknown source of contamination, since increases in fungi species richness in polluted coastal waters have been reported. This is also, to the best of our knowledge, the first report of Pestalotiopsis in shellfish. Copyright © 2016 Elsevier Ltd. All rights reserved.

  2. Module bay with directed flow

    Science.gov (United States)

    Torczynski, John R.

    2001-02-27

    A module bay requires less cleanroom airflow. A shaped gas inlet passage can allow cleanroom air into the module bay with flow velocity preferentially directed toward contaminant rich portions of a processing module in the module bay. Preferential gas flow direction can more efficiently purge contaminants from appropriate portions of the module bay, allowing a reduced cleanroom air flow rate for contaminant removal. A shelf extending from an air inlet slit in one wall of a module bay can direct air flowing therethrough toward contaminant-rich portions of the module bay, such as a junction between a lid and base of a processing module.

  3. Transcriptome-wide analysis reveals candidate genes responsible for the asymmetric pigment pattern in scallop Patinopecten yessoensis

    Directory of Open Access Journals (Sweden)

    XJ Sun

    2016-09-01

    Full Text Available Transcriptome-wide analysis reveals candidate genes responsible for the asymmetric pigment pattern in scallop Patinopecten yessoensis XJ Sun, LQ Zhou, ZH Liu, B Wu, AG Yang Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China Accepted September 14, 2016 Abstract Yesso scallop Patinopecten yessoensis is an economically important marine bivalve species in aquaculture and fishery in Asian countries. The colors of the left and right shells are obviously distinct, typically having reddish-brown for the left and white for the right. This left-right asymmetric pigment pattern is a very unique phenomenon among invertebrates, whereas the molecular mechanisms that control regional differences in pigmentation are not clear. To better understand the left-right asymmetric pigment pattern, we apply Illumina digital gene expression (DGE to characterize the gene expression profiles in left and right mantle tissues, and identify five differentially expressed genes, including Cytochrome P450 and other four unknown genes. Among the five genes, one gene shows significantly higher expression in the right mantle, while other four exhibit significantly higher expression in the left mantle. We further validate the DGE results by using quantitative real-time PCR for P450, resulting in approximately 32-fold higher expression in the left mantle than that in the right mantle. These findings will not only help assist our understanding of the sophisticated processes of shell pigmentation in scallops, but also provide new insights into the adaptive evolution of phenotypes to maximize survival that underlie the left-right asymmetric pigment pattern in molluscs.

  4. Reconstruction of seasonal temperature variability in the tropical Pacific Ocean from the shell of the scallop, Comptopallium radula

    Science.gov (United States)

    Thébault, Julien; Chauvaud, Laurent; Clavier, Jacques; Guarini, Jennifer; Dunbar, Robert B.; Fichez, Renaud; Mucciarone, David A.; Morize, Eric

    2007-02-01

    We investigated the oxygen isotope composition (δ 18O) of shell striae from juvenile Comptopallium radula (Mollusca; Pectinidae) specimens collected live in New Caledonia. Bottom-water temperature and salinity were monitored in-situ throughout the study period. External shell striae form with a 2-day periodicity in this scallop, making it possible to estimate the date of precipitation for each calcite sample collected along a growth transect. The oxygen isotope composition of shell calcite (δ 18O shell calcite) measured at almost weekly resolution on calcite accreted between August 2002 and July 2003 accurately tracks bottom-water temperatures. A new empirical paleotemperature equation for this scallop species relates temperature and δ 18O shell calcite: t(°C)=20.00(±0.61)-3.66(±0.39)×(δ18O-δ18O) The mean absolute accuracy of temperature estimated using this equation is 1.0 °C at temperatures between 20 and 30 °C. Uncertainties regarding the precise timing of CaCO 3 deposition and the actual variations in δ 18O water at our study sites probably contribute to this error. Comparison with a previously published empirical paleotemperature equation indicates that C. radula calcite is enriched in 18O by ˜0.7‰ relative to equilibrium. Given the direction of this offset and the lack of correlation between shell growth rate and δ 18O shell calcite, this disequilibrium is unlikely to be related to kinetic isotope effects. We suggest that this enrichment reflects (1) a relatively low pH in the scallop's marginal extrapallial fluid (EPF), (2) an isotopic signature of the EPF different from that of seawater, or (3) Rayleigh fractionation during the biocalcification process. Relative changes in δ 18O shell calcite reflect seawater temperature variability at this location and we suggest that the shell of C. radula may be useful as an archive of past seawater temperatures.

  5. Characterization of the mantle transcriptome of yesso scallop (Patinopecten yessoensis): identification of genes potentially involved in biomineralization and pigmentation.

    Science.gov (United States)

    Sun, Xiujun; Yang, Aiguo; Wu, Biao; Zhou, Liqing; Liu, Zhihong

    2015-01-01

    The Yesso scallop Patinopecten yessoensis is an economically important marine bivalve species in aquaculture and fishery in Asian countries. However, limited genomic resources are available for this scallop, which hampers investigations into molecular mechanisms underlying their unique biological characteristics, such as shell formation and pigmentation. Mantle is the special tissue of P. yessoensis that secretes biomineralization proteins inducing shell deposition as well as pigmentation on the shells. However, a current deficiency of transcriptome information limits insight into mechanisms of shell formation and pigmentation in this species. In this study, the transcriptome of the mantle of P. yessoensis was deeply sequenced and characterized using Illumina RNA-seq technology. A total of 86,521 unique transcripts are assembled from 55,884,122 reads that passed quality filters, and annotated, using Gene Ontology classification. A total of 259 pathways are identified in the mantle transcriptome, including the calcium signaling and melanogenesis pathways. A total of 237 unigenes that are homologous to 102 reported biomineralization genes are identified, and 121 unigenes that are homologous to 93 known proteins related to melanin biosynthesis are found. Twenty-three annotated unigenes, which are mainly homologous to calmodulin and related proteins, Ca2+/calmodulin-dependent protein kinase, adenylate/guanylate cyclase, and tyrosinase family are potentially involved in both biomineralization and melanin biosynthesis. It is suggested that these genes are probably not limited in function to induce shell deposition by calcium metabolism, but may also be involved in pigmentation of the shells of the scallop. This potentially supports the idea that there might be a link between calcium metabolism and melanin biosynthesis, which was previously found in vertebrates. The findings presented here will notably advance the understanding of the sophisticated processes of shell

  6. A mixture of cod and scallop protein reduces adiposity and improves glucose tolerance in high-fat fed male C57BL/6J mice.

    Directory of Open Access Journals (Sweden)

    Hanne Sørup Tastesen

    Full Text Available Low-protein and high-protein diets regulate energy metabolism in animals and humans. To evaluate whether different dietary protein sources modulate energy balance when ingested at average levels obesity-prone male C57BL/6J mice were pair-fed high-fat diets (67 energy percent fat, 18 energy percent sucrose and 15 energy percent protein with either casein, chicken filet or a mixture of cod and scallop (1:1 on amino acid content as protein sources. At equal energy intake, casein and cod/scallop fed mice had lower feed efficiency than chicken fed mice, which translated into reduced adipose tissue masses after seven weeks of feeding. Chicken fed mice had elevated hepatic triglyceride relative to casein and cod/scallop fed mice and elevated 4 h fasted plasma cholesterol concentrations compared to low-fat and casein fed mice. In casein fed mice the reduced adiposity was likely related to the observed three percent lower apparent fat digestibility compared to low-fat, chicken and cod/scallop fed mice. After six weeks of feeding an oral glucose tolerance test revealed that despite their lean phenotype, casein fed mice had reduced glucose tolerance compared to low-fat, chicken and cod/scallop fed mice. In a separate set of mice, effects on metabolism were evaluated by indirect calorimetry before onset of diet-induced obesity. Spontaneous locomotor activity decreased in casein and chicken fed mice when shifting from low-fat to high-fat diets, but cod/scallop feeding tended (P = 0.06 to attenuate this decrease. Moreover, at this shift, energy expenditure decreased in all groups, but was decreased to a greater extent in casein fed than in cod/scallop fed mice, indicating that protein sources regulated energy expenditure differently. In conclusion, protein from different sources modulates energy balance in C57BL/6J mice when given at normal levels. Ingestion of a cod/scallop-mixture prevented diet-induced obesity compared to intake of chicken filet and

  7. 33 CFR 100.124 - Maggie Fischer Memorial Great South Bay Cross Bay Swim, Great South Bay, New York.

    Science.gov (United States)

    2010-07-01

    ... South Bay Cross Bay Swim, Great South Bay, New York. 100.124 Section 100.124 Navigation and Navigable... NAVIGABLE WATERS § 100.124 Maggie Fischer Memorial Great South Bay Cross Bay Swim, Great South Bay, New York... swimmer or safety craft on the swim event race course bounded by the following points: Starting Point...

  8. Demographic processes underlying subtle patterns of population structure in the scalloped hammerhead shark, Sphyrna lewini.

    Science.gov (United States)

    Nance, Holly A; Klimley, Peter; Galván-Magaña, Felipe; Martínez-Ortíz, Jimmy; Marko, Peter B

    2011-01-01

    Genetic diversity (θ), effective population size (N(e)), and contemporary levels of gene flow are important parameters to estimate for species of conservation concern, such as the globally endangered scalloped hammerhead shark, Sphyrna lewini. Therefore, we have reconstructed the demographic history of S. lewini across its Eastern Pacific (EP) range by applying classical and coalescent population genetic methods to a combination of 15 microsatellite loci and mtDNA control region sequences. In addition to significant population genetic structure and isolation-by-distance among seven coastal sites between central Mexico and Ecuador, the analyses revealed that all populations have experienced a bottleneck and that all current values of θ are at least an order of magnitude smaller than ancestral θ, indicating large decreases in N(e) (θ = 4N(e)μ), where μ is the mutation rate. Application of the isolation-with-migration (IM) model showed modest but significant genetic connectivity between most sampled sites (point estimates of Nm = 0.1-16.7), with divergence times (t) among all populations significantly greater than zero. Using a conservative (i.e., slow) fossil-based taxon-specific phylogenetic calibration for mtDNA mutation rates, posterior probability distributions (PPDs) for the onset of the decline in N(e) predate modern fishing in this region. The cause of decline over the last several thousand years is unknown but is highly atypical as a post-glacial demographic history. Regardless of the cause, our data and analyses suggest that S. lewini was far more abundant throughout the EP in the past than at present.

  9. Demographic processes underlying subtle patterns of population structure in the scalloped hammerhead shark, Sphyrna lewini.

    Directory of Open Access Journals (Sweden)

    Holly A Nance

    Full Text Available Genetic diversity (θ, effective population size (N(e, and contemporary levels of gene flow are important parameters to estimate for species of conservation concern, such as the globally endangered scalloped hammerhead shark, Sphyrna lewini. Therefore, we have reconstructed the demographic history of S. lewini across its Eastern Pacific (EP range by applying classical and coalescent population genetic methods to a combination of 15 microsatellite loci and mtDNA control region sequences. In addition to significant population genetic structure and isolation-by-distance among seven coastal sites between central Mexico and Ecuador, the analyses revealed that all populations have experienced a bottleneck and that all current values of θ are at least an order of magnitude smaller than ancestral θ, indicating large decreases in N(e (θ = 4N(eμ, where μ is the mutation rate. Application of the isolation-with-migration (IM model showed modest but significant genetic connectivity between most sampled sites (point estimates of Nm = 0.1-16.7, with divergence times (t among all populations significantly greater than zero. Using a conservative (i.e., slow fossil-based taxon-specific phylogenetic calibration for mtDNA mutation rates, posterior probability distributions (PPDs for the onset of the decline in N(e predate modern fishing in this region. The cause of decline over the last several thousand years is unknown but is highly atypical as a post-glacial demographic history. Regardless of the cause, our data and analyses suggest that S. lewini was far more abundant throughout the EP in the past than at present.

  10. Molecular cloning and characterization of SoxB2 gene from Zhikong scallop Chlamys farreri

    Science.gov (United States)

    He, Yan; Bao, Zhenmin; Guo, Huihui; Zhang, Yueyue; Zhang, Lingling; Wang, Shi; Hu, Jingjie; Hu, Xiaoli

    2013-11-01

    The Sox proteins play critical roles during the development of animals, including sex determination and central nervous system development. In this study, the SoxB2 gene was cloned from a mollusk, the Zhikong scallop ( Chlamys farreri), and characterized with respect to phylogeny and tissue distribution. The full-length cDNA and genomic DNA sequences of C. farreri SoxB2 ( Cf SoxB2) were obtained by rapid amplification of cDNA ends and genome walking, respectively, using a partial cDNA fragment from the highly conserved DNA-binding domain, i.e., the High Mobility Group (HMG) box. The full-length cDNA sequence of Cf SoxB2 was 2 048 bp and encoded 268 amino acids protein. The genomic sequence was 5 551 bp in length with only one exon. Several conserved elements, such as the TATA-box, GC-box, CAAT-box, GATA-box, and Sox/sry-sex/testis-determining and related HMG box factors, were found in the promoter region. Furthermore, real-time quantitative reverse transcription PCR assays were carried out to assess the mRNA expression of Cf SoxB 2 in different tissues. SoxB2 was highly expressed in the mantle, moderately in the digestive gland and gill, and weakly expressed in the gonad, kidney and adductor muscle. In male and female gonads at different developmental stages of reproduction, the expression levels of Cf SoxB2 were similar. Considering the specific expression and roles of SoxB 2 in other animals, in particular vertebrates, and the fact that there are many pallial nerves in the mantle, cerebral ganglia in the digestive gland and gill nerves in gill, we propose a possible essential role in nervous tissue function for Sox B 2 in C. farreri.

  11. Differential Regulation of Cyclin E by Yorkie-Scalloped Signaling in Organ Development

    Directory of Open Access Journals (Sweden)

    Zhiqiang Shu

    2017-03-01

    Full Text Available Tissue integrity and homeostasis are accomplished through strict spatial and temporal regulation of cell growth and proliferation during development. Various signaling pathways have emerged as major growth regulators across metazoans; yet, how differential growth within a tissue is spatiotemporally coordinated remains largely unclear. Here, we report a role of a growth modulator Yorkie (Yki, the Drosophila homolog of Yes-associated protein (YAP, that differentially regulates its targets in Drosophila wing imaginal discs; whereby Yki interacts with its transcriptional partner, Scalloped (Sd, the homolog of the TEAD/TEF family transcription factor in mammals, to control an essential cell cycle regulator Cyclin E (CycE. Interestingly, when Yki was coexpressed with Fizzy-related (Fzr, a Drosophila endocycle inducer and homolog of Cdh1 in mammals, surrounding hinge cells displayed larger nuclear size than distal pouch cells. The observed size difference is attributable to differential regulation of CycE, a target of Yki and Sd, the latter of which can directly bind to CycE regulatory sequences, and is expressed only in the pouch region of the wing disc starting from the late second-instar larval stage. During earlier stages of larval development, when Sd expression was not detected in the wing disc, coexpression of Fzr and Yki did not cause size differences between cells along the proximal–distal axis of the disc. We show that ectopic CycE promoted cell proliferation and apoptosis, and inhibited transcriptional activity of Yki targets. These findings suggest that spatiotemporal expression of transcription factor Sd induces differential growth regulation by Yki during wing disc development, highlighting coordination between Yki and CycE to control growth and maintain homeostasis.

  12. The Fermi's Bayes Theorem

    CERN Document Server

    D'Agostini, G

    2005-01-01

    It is curious to learn that Enrico Fermi knew how to base probabilistic inference on Bayes theorem, and that some influential notes on statistics for physicists stem from what the author calls elsewhere, but never in these notes, {\\it the Bayes Theorem of Fermi}. The fact is curious because the large majority of living physicists, educated in the second half of last century -- a kind of middle age in the statistical reasoning -- never heard of Bayes theorem during their studies, though they have been constantly using an intuitive reasoning quite Bayesian in spirit. This paper is based on recollections and notes by Jay Orear and on Gauss' ``Theoria motus corporum coelestium'', being the {\\it Princeps mathematicorum} remembered by Orear as source of Fermi's Bayesian reasoning.

  13. A coupled biophysical model for the distribution of the great scallop Pecten maximus in the English Channel

    Science.gov (United States)

    Le Goff, Clément; Lavaud, Romain; Cugier, Philippe; Jean, Fred; Flye-Sainte-Marie, Jonathan; Foucher, Eric; Desroy, Nicolas; Fifas, Spyros; Foveau, Aurélie

    2017-03-01

    In this paper we used a modelling approach integrating both physical and biological constraints to understand the biogeographical distribution of the great scallop Pecten maximus in the English Channel during its whole life cycle. A 3D bio-hydrodynamical model (ECO-MARS3D) providing environmental conditions was coupled to (i) a population dynamics model and (ii) an individual ecophysiological model (Dynamic Energy Budget model). We performed the coupling sequentially, which underlined the respective role of biological and physical factors in defining P. maximus distribution in the English Channel. Results show that larval dispersion by hydrodynamics explains most of the scallop distribution and enlighten the main known hotspots for the population, basically corresponding to the main fishing areas. The mechanistic description of individual bioenergetics shows that food availability and temperature control growth and reproduction and explain how populations may maintain themselves in particular locations. This last coupling leads to more realistic densities and distributions of adults in the English Channel. The results of this study improves our knowledge on the stock and distribution dynamics of P. maximus, and provides grounds for useful tools to support management strategies.

  14. Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RADseq-derived SNPs.

    Science.gov (United States)

    Van Wyngaarden, Mallory; Snelgrove, Paul V R; DiBacco, Claudio; Hamilton, Lorraine C; Rodríguez-Ezpeleta, Naiara; Jeffery, Nicholas W; Stanley, Ryan R E; Bradbury, Ian R

    2017-01-01

    Understanding patterns of dispersal and connectivity among marine populations can directly inform fisheries conservation and management. Advances in high-throughput sequencing offer new opportunities for estimating marine connectivity. We used restriction-site-associated DNA sequencing to examine dispersal and realized connectivity in the sea scallop Placopecten magellanicus, an economically important marine bivalve. Based on 245 individuals sampled rangewide at 12 locations from Newfoundland to the Mid-Atlantic Bight, we identified and genotyped 7163 single nucleotide polymorphisms; 112 (1.6%) were identified as outliers potentially under directional selection. Bayesian clustering revealed a discontinuity between northern and southern samples, and latitudinal clines in allele frequencies were observed in 42.9% of the outlier loci and in 24.6% of neutral loci. Dispersal estimates derived using these clines and estimates of linkage disequilibrium imply limited dispersal; 373.1 ± 407.0 km (mean ± SD) for outlier loci and 641.0 ± 544.6 km (mean ± SD) for neutral loci. Our analysis suggests restricted dispersal compared to the species range (>2000 km) and that dispersal and effective connectivity differ. These observations support the hypothesis that limited effective dispersal structures scallop populations along eastern North America. These findings can help refine the appropriate scale of management and conservation in this commercially valuable species.

  15. Characterization, expression and function analysis of DAX1 gene of scallop ( Chlamys farreri jones and preston 1904) during its gametogenesis

    Science.gov (United States)

    Li, Hailong; Liu, Jianguo; Huang, Xiaoting; Wang, Dan; Zhang, Zhifeng

    2014-08-01

    DAX1, a member of nuclear receptor superfamily, has a function in the sex determination and gonadal differentiation of several vertebrate species. However, little information about DAX1 of invertebrates is available. Here we cloned a homolog of scallop ( Chlamys farreri Jones and Preston 1904) dax1, Cf-dax1, and determined its expression characteristics at mRNA and protein levels. The cDNA sequence of Cf-dax1 was 2093 bp in length, including 1404 bp open reading frame (ORF) encoding 467 amino acids. Unlike those of vertebrates, no conserved LXXLL-related motif was found in the putative DNA binding region of Cf-DAX1. Fluorescence in situ hybridization showed that Cf-dax1 located on the short arm of a pair of subtelocentric chromosomes. Tissue distribution analysis using semi-quantitative RT-PCR revealed that Cf-dax1 expressed widely in adult scallop tissues, with the highest expression level found in adductor muscle, moderate level in mantle, gill and testis, and low level in kidney, ovary and hepatopancreas. The result of quantitative real-time PCR indicated that the expression of Cf-dax1 was significantly higher ( Psex-dimorphic expression pattern. Furthermore, immunohistochemical detection found that Cf-DAX1 mainly located in spermatogonia and spermatocytes of testis and in oogonia and oocytes of ovary, implying that DAX1 may involve in gametogenesis of bivalves.

  16. Electron paramagnetic resonance study of defects in {gamma}-irradiated marine mussel (Mytilus galloprovincialis) and Scallop (Pecten jacobaeus) shells

    Energy Technology Data Exchange (ETDEWEB)

    Koeseoglu, R. [Erciyes Univ., Halil Bayraktar Health Services Vocational Coll., Kayseri (Turkey); Koeksal, F. [Ondokuz Mayis Univ., Physics Dept., Samsun (Turkey); Birey, M. [Ankara Univ., Physics Dept., Ankara (Turkey)

    2004-11-01

    EPR studies have been performed on some gamma-irradiated marine mussels (Mytilus galloprovincialis) and scallops (Pecten jacobaeus) from the families of Mytilidae and Pectinidae, respectively. Before {gamma}-irradiation, the EPR lines of Mytilus galloprovincialis indicated the existence of Mn{sup 2+} ions, which were not observed in the powders of scallop shells. {gamma}-irradiation induced defects in powders of Mytilus galloprovincialis shells, were attributed to orthorhombic CO{sub 3}{sup -}, axial CO{sub 3}{sup 3-}, orthorhombic CO{sub 2}{sup -}, freely rotating CO{sub 2}{sup -}, freely rotating SO{sub 2}{sup -}, axial SO{sub 3}{sup -}, isotropic PO{sub 4}{sup 2-} and organic free radicals. {gamma}-irradiation induced defects in powders of Pecten jacobaeus shells were attributed to orthorhombic CO{sub 3}{sup -}, axial CO{sub 3}{sup 3-}, orthorhombic CO{sub 2}{sup -}, freely rotating CO{sub 2}{sup -}, freely rotating SO{sub 2}{sup -}, and axial SO{sub 3}{sup -} free radicals. The EPR parameters of the free radicals were compared with literature data on similar defects. (orig.)

  17. Inheritance Pattern of Microsatellite Loci and Their Use for Kinship Analysis m the Japanese Scallop Patinopecten yessoensis

    Institute of Scientific and Technical Information of China (English)

    XU Kefeng; LI Qi

    2009-01-01

    The inheritance mode of seven microsatellite markers was investigated in Patinopecten yessoensis larvae from four con-trolled crosses, and the feasibility of using these markers for kinship estimation was also examined. All the seven microsatellite loci were compatible with Mendelian inheritance. Neither sex-linked barriers to transmission nor major barriers to fertilization between gametes from the parents were evident. Two of the seven loci showed the presence of null alleles in two families, suggesting the need to conduct comprehensive species-specific inheritance studies for microsatellite loci used in population genetic studies. However, even if the null allele heterozygotes were considered as homozygotes in the calculation of genetic distance, offspring from four fami-lies were all unambiguously discriminated in the neighbor-joining dendrogram. This result indicates that the microsatellite markers used may be capable of discriminating between related and unrelated scallop larvae in the absence of pedigree information, and of investigating the effective number of parents contributing to the hatchery population of the Japanese scallop.

  18. Characterization of ²⁴¹ Am and ¹³⁴Cs bioaccumulation in the king scallop Pecten maximus: investigation via three exposure pathways.

    Science.gov (United States)

    Metian, Marc; Warnau, Michel; Teyssié, Jean-Louis; Bustamante, Paco

    2011-06-01

    In order to understand the bioaccumulation of (241)Am and (134)Cs in scallops living in sediments, the uptake and depuration kinetics of these two elements were investigated in the king scallop Pecten maximus exposed via seawater, food, or sediment under laboratory conditions. Generally, (241)Am accumulation was higher and its retention was stronger than (134)Cs. This was especially obvious when considering whole animals exposed through seawater with whole-body concentration factors (CF(7d)) of 62 vs. 1, absorption efficiencies (A(0l)) of 78 vs. 45 for seawater and biological half-lives (T(b½l)) of 892 d vs. 22 d for (241)Am and (134)Cs, respectively. In contrast, following a single feeding with radiolabelled phytoplankton, the assimilation efficiency (AE) and T(b½l) of (134)Cs were higher than those of (241)Am (AE: 28% vs. 20%; T(b½l): 14 d vs. 9 d). Among scallop tissues, the shells always contained the higher proportion of the total body burden of (241)Am whatever the exposure pathway. In contrast, the whole soft parts presented the major fraction of whole-body burden of (134)Cs, which was generally associated with muscular tissues. Our results showed that the two radionuclides have contrasting behaviors in scallops, in relation to their physico-chemical properties.

  19. Evaluation and Optimization of Amino Acids Retention Rate of Japanese Scallop Powder with Different Food Additives in Spray-drying Process by Response Surface Method

    Directory of Open Access Journals (Sweden)

    Jianfeng Sun

    2014-01-01

    Full Text Available Spray-drying process for Japanese scallop powder can cause damage because of its heat-sensitive components such as amino acids. Therefore it is important for amino acids to be embedded with the appropriate food additives in spray-drying process. In this study, with Japanese scallop as the raw, Response Surface Method (RSM with three variables (the addition level of &beta-cyclodextrin, modified starch and CMC was used to investigate the effect of food additives on the amino acids retention rate in Japanese scallop powder in spray drying. The equation model to predict amino acids retention rate was reported. The results showed that the optimal addition level of &beta-cyclodextrin, modified starch and CMC were 25.55, 24.55 and 2.96%, respectively. And the amino acids retention rate was 56.75±0.64%. This model was testified to fit the actual situation preferably, therefore it can provide theoretical and practical basis for industrial production of Japanese scallop powder.

  20. SOME BIOLOGICAL ASPECTS OF SCALLOPED HAMMERHEAD SHARKS (Sphyrna lewini Griffith & Smith, 1834 CAUGHT FROM COASTAL FISHERIES IN THE EASTERN INDIAN OCEAN

    Directory of Open Access Journals (Sweden)

    Umi Chodrijah

    2015-12-01

    Full Text Available Indonesia has the largest chondrichthyan fishery in the world, with a reported of 105,000 and 118,000 tonnes landed in 2002 and 2003 respectively. Scalloped hammerhead shark was either targeted or by-catch from this fishery, mostly for its fins. Despite of the growing concern around the world, the availability of biological data of this species, especially in the Eastern Indian Ocean is still lacking. The objectives of this paper are to present some biological information (size composition and sex ratio of the scalloped hammerhead, from coastal fisheries in Eastern Indian Ocean. The data used for the analysis comprised of two components, i.e. survey data in 2010 (February, March, June, August, October and December and data from daily monitoring shark landing in 2013 (January to December. Substantially lower mean size, more immature sharks and more frequent of female caught over years showed that scalloped hammerhead shark in the Eastern Indian Ocean are facing intensive fishing pressure which could lead to overfishing. This could harm the sustainability of scalloped hammerhead shark resource in the long run. The relationship between clasper length and total length was positively correlated where every 5 cmTL increment on clasper length adding 51 cmTL on total length.

  1. Richards Bay effluent pipeline

    CSIR Research Space (South Africa)

    Lord, DA

    1986-07-01

    Full Text Available This report discusses the adequate provision for waste disposal is an essential part of the infrastructure needed in the development of Richards Bay as a deepwater harbour and industrial/metropolitan area. Having considered various options for waste...

  2. Extensive use of mesopelagic waters by a Scalloped hammerhead shark (Sphyrna lewini) in the Red Sea

    KAUST Repository

    Spät, Julia L.Y.

    2017-09-06

    Background Despite being frequently landed in fish markets along the Saudi Arabian Red Sea coast, information regarding fundamental biology of the Scalloped hammerhead shark (Sphyrna lewini) in this region is scarce. Satellite telemetry studies can generate important data on life history, describe critical habitats, and ultimately redefine management strategies for sharks. To better understand the horizontal and vertical habitat use of S. lewini in the Red Sea and to aid with potential future development of zoning and management plans for key habitats, we deployed a pop-up satellite archival transmitting tag to track a single female specimen (240 cm total length) for a tracking period of 182 days. Results The tag was physically recovered after a deployment period of 6 months, thus providing the complete archived dataset of more than one million depth and temperature records. Based on a reconstructed, most probable track, the shark travelled a circular distance of approximately 1000 km from the central Saudi Arabian Red Sea southeastward into Sudanese waters, returning to the tagging location toward the end of the tracking period. Mesopelagic excursions to depths between 650 and 971 m occurred on 174 of the 182 days of the tracking period. Intervals between such excursions were characterized by constant oscillatory diving in the upper 100 m of the water column. Conclusions This study provides evidence that mesopelagic habitats might be more commonly used by S. lewini than previously suggested. We identified deep diving behavior throughout the 24-h cycle over the entire 6-month tracking period. In addition to expected nightly vertical habitat use, the shark exhibited frequent mesopelagic excursions during daytime. Deep diving throughout the diel cycle has not been reported before and, while dive functionality remains unconfirmed, our study suggests that mesopelagic excursions may represent foraging events within and below deep scattering layers. Additional research

  3. 响应面法优化扇贝沙司加工工艺研究%Optimization of Scallop Sauce by Response Surface Methodology

    Institute of Scientific and Technical Information of China (English)

    胡珊珊; 王颉; 孙剑锋

    2012-01-01

    With scallop miso sauce as the main material, the preparation of scallop sauce was researched. The best seasoning ratio was: scallop miso sauce 30%, sugar 14%, monosodium glutamate 1%, white vinegar 5%, spice sauce 30%. Under these conditions, the sensory score of the product was 9.6±0.45. Optimization model of scallop sauce was established and the validation test results showed that the prediction accuracy rate was 94.33%. The product was got with oil lubrication bright, reddish—brown color, rich flavor with sauce, highlight flavor with seafood, harmony flavor of salty and fresh. The trial process can guarantee the quality of scallop sauce with the scale—up potential.%以扇贝豆酱淋汁为主要原料,研究扇贝沙司的加工工艺.最佳配比为:扇贝豆酱淋汁30%,砂糖14%,味精1%,白醋4%,香辛料汁30%,在此条件下扇贝沙司感官评分为9.6±0.45.建立了扇贝沙司单因素与感官评分的模型,利用响应面法对加工工艺进行优化并得到优化模型,验证试验表明该模型的预测准确率达94.33%.在此条件下得到的产品油润光亮,色泽红褐色,酱香味浓郁,海鲜味突出,口味和谐适中,咸鲜香味兼备.本试验的加工工艺能保证扇贝沙司的品质,具有中试放大的潜力.

  4. The TEAD family transcription factor Scalloped regulates blood progenitor maintenance and proliferation in Drosophila through PDGF/VEGFR receptor (Pvr) signaling.

    Science.gov (United States)

    Ferguson, Gabriel B; Martinez-Agosto, Julian A

    2017-05-01

    The Drosophila lymph gland is a well-characterized hematopoietic organ in which a population of multipotent stem-like progenitors is maintained by a combination of signals from different cellular populations within the organ. The lymph gland serves as an ideal model both for the interrogation of signaling mechanisms involved in progenitor maintenance as well as a tool for the identification of novel regulatory mechanisms in the highly conserved process of hematopoiesis. Here, we demonstrate a requirement for the TEAD transcription factor Scalloped in the maintenance and proliferation of hematopoietic progenitors. We have characterized a novel population of hemocytes in the early lymph gland identified by the expression of Hand, Scalloped, and the PVR ligand PVF2. In this unique population, we show that Scalloped maintains PVF2 expression, which is required for hemocyte proliferation and achievement of normal lymph gland size. We further demonstrate that STAT signaling marks actively proliferating hemocytes in the early lymph gland, and inhibition of this pathway causes decreased lymph gland growth similar to loss of Scalloped and PVF2, demonstrating a requirement for PVR/STAT signaling in the regulation of lymph gland size. Finally, we demonstrate that Scalloped regulates PVR expression and the maintenance of progenitors downstream of PVR/STAT/ADGF signaling. These findings further establish the role of the TEAD family transcription factors in the regulation of important signaling molecules, and expand our mechanistic insight into the balance between progenitor maintenance and proliferation required for the regulation of lymph gland homeostasis. Copyright © 2017. Published by Elsevier Inc.

  5. The effect of the causative algae of large-scale HAB in the East China Sea on egg hatching of Argopecten irradians, and population growth of Brachionus plicatilis and Moina mongolica

    Institute of Scientific and Technical Information of China (English)

    CHEN Taoying; YAN Tian; WANG Liping; ZHANG Bin; ZHOU Mingjiang

    2007-01-01

    The impacts of Prorocentrum donghaiense Lu and Alexandrium catenella Balech, causative species of the large-scale HAB in the East China Sea, were studied under laboratory conditions. According to bloom densities, the effects of monoculture and mixture of the two species were examined on the egg-hatching success of Argopecten irradians Lamarck, and the population growth of Brachionus plicatilis Müller and Moina mongolica Daday. The results showed that monoculture of A. catenella had a significant inhibition on the egg hatching success of A. irradians, and the population growth of B. plicatilis and M. mongolica. The median effective densities (EDs0) inhibiting the egg hatching success of A. irradians for 24 h and the population growth of B. plicatilis and M.mongolica for 96 h were 800, 630, and 2 400 cells/cm3, respectively. Monoculture of P. donghaiense has no such inhibitory effect on the egg hatching success of A. irradians; P. donghaiense at lower suitable densities could sustain the population growth of B. plicatilis ( 1 × 104 ~ 3 × 104 cells/cm3 ) and M. mongolica (2 × 104 ~ 5 × 104 cells/cm3 ); P. donghaiense at higher densities had significantly adverse effect on the population growth of B. plicatilis (4 × 104 ~ 10 × 104 cells/cm3 ) and M. mongolica ( 10 ×104 cells/cm3). When the two algae were mixed according to bloom densities, P. donghaiense at suitable densities to some extent could decrease the toxicity of A. catenella to B. plicatilis and M. mongolica. The results indicated that the large-scale HAB in the East China Sea could have adverse effect on zooplankton, and might further influence the marine ecosystem, especially when there was also Alexandrium bloom.

  6. Inactivation of avian influenza virus, newcastle disease virus and goose parvovirus using solution of nano-sized scallop shell powder.

    Science.gov (United States)

    Thammakarn, Chanathip; Satoh, Keisuke; Suguro, Atsushi; Hakim, Hakimullah; Ruenphet, Sakchai; Takehara, Kazuaki

    2014-09-01

    Scallop shell powder produced by calcination process - the average diameter of the powder particles being 20 µm (SSP) - was further ground into nano-sized particles, with average diameter of 500 nm, here designated CaO-Nano. Solution of CaO-Nano could inactivate avian influenza virus within 5 sec, whereas the solution of SSP could not even after 1 hr incubation. CaO-Nano solution could also inactivate Newcastle disease virus and goose parvovirus within 5 sec and 30 sec, respectively. The virus-inactivating capacity (neutralizing index: NI>3) of the solution was not reduced by the presence of 20% fetal bovine serum. CaO-Nano solution seems to be a good candidate of materials for enhancement of biosecurity in farms.

  7. Quality and shelf life of the gonad of lion's paw scallop transported and stored whole in refrigeration

    Directory of Open Access Journals (Sweden)

    Victor Manuel Ocaño-Higuera

    2015-05-01

    Full Text Available The effect of refrigerated 48h transport and 4 days storage on the quality and shelf life of the whole lion's paw scallop Nodipecten subnodosus gonad was evaluated. Proximal composition, adenosine 5´triphosphate (ATP and related products, K-value, total volatile bases (TVB-N, trimethylamine (TMA-N, pH, fatty acid profile and microbiological analyses were quantified. Gonad holds a significant composition of essential fatty acids while levels of gonadal ATP were initially low; moreover, K-value of the gonad remained constant. With respect to TVB-N and TMA-N, only the former exceeded allowed limits. The pH level showed no significant variation during storage and, despite the high level of TVB-N, according to the TMA-N as well as microbiological analyses it was demonstrated innocuity after 4 days under the transportation and storage conditions utilized.

  8. Identification of male gametogenesis expressed genes from the scallop Nodipecten subnodosus by suppressive subtraction hybridization and pyrosequencing.

    Science.gov (United States)

    Llera-Herrera, Raúl; García-Gasca, Alejandra; Abreu-Goodger, Cei; Huvet, Arnaud; Ibarra, Ana M

    2013-01-01

    Despite the great advances in sequencing technologies, genomic and transcriptomic information for marine non-model species with ecological, evolutionary, and economical interest is still scarce. In this work we aimed to identify genes expressed during spermatogenesis in the functional hermaphrodite scallop Nodipecten subnodosus (Mollusca: Bivalvia: Pectinidae), with the purpose of obtaining a panel of genes that would allow for the study of differentially transcribed genes between diploid and triploid scallops in the context of meiotic arrest and reproductive sterility. Because our aim was to isolate genes involved in meiosis and other testis maturation-related processes, we generated suppressive subtractive hybridization libraries of testis vs. inactive gonad. We obtained 352 and 177 ESTs by clone sequencing, and using pyrosequencing (454-Roche) we maximized the identified ESTs to 34,276 reads. A total of 1,153 genes from the testis library had a blastx hit and GO annotation, including genes specific for meiosis, spermatogenesis, sex-differentiation, and transposable elements. Some of the identified meiosis genes function in chromosome pairing (scp2, scp3), recombination and DNA repair (dmc1, rad51, ccnb1ip1/hei10), and meiotic checkpoints (rad1, hormad1, dtl/cdt2). Gene expression analyses in different gametogenic stages in both sexual regions of the gonad of meiosis genes confirmed that the expression was specific or increased towards the maturing testis. Spermatogenesis genes included known testis-specific ones (kelch-10, shippo1, adad1), with some of these known to be associated to sterility. Sex differentiation genes included one of the most conserved genes at the bottom of the sex-determination cascade (dmrt1). Transcript from transposable elements, reverse transcriptase, and transposases in this library evidenced that transposition is an active process during spermatogenesis in N. subnodosus. In relation to the inactive library, we identified 833

  9. Sensitivity towards elevated pCO2 in great scallop (Pecten maximus Lamarck) embryos and fed larvae

    Science.gov (United States)

    Andersen, Sissel; Grefsrud, Ellen S.; Harboe, Torstein

    2017-02-01

    The increasing amount of dissolved anthropogenic CO2 has caused a drop in pH values in the open ocean known as ocean acidification. This change in seawater carbonate chemistry has been shown to have a negative effect on a number of marine organisms. Early life stages are the most vulnerable, and especially the organisms that produce calcified structures in the phylum Mollusca. Few studies have looked at effects on scallops, and this is the first study presented including fed larvae of the great scallop (Pecten maximus) followed until day 14 post-fertilization. Fertilized eggs from unexposed parents were exposed to three levels of pCO2 using four replicate units: 465 (ambient), 768 and 1294 µatm, corresponding to pHNIST of 7.94, 7.75 (-0.19 units) and 7.54 (-0.40 units), respectively. All of the observed parameters were negatively affected by elevated pCO2: survival, larval development, shell growth and normal shell development. The latter was observed to be affected only 2 days after fertilization. Negative effects on the fed larvae at day 7 were similar to what was shown earlier for unfed P. maximus larvae. Growth rate in the group at 768 µatm seemed to decline after day 7, indicating that the ability to overcome the environmental change at moderately elevated pCO2 was lost over time. The present study shows that food availability does not decrease the sensitivity to elevated pCO2 in P. maximus larvae. Unless genetic adaptation and acclimatization counteract the negative effects of long term elevated pCO2, recruitment in populations of P. maximus will most likely be negatively affected by the projected drop of 0.06-0.32 units in pH within year 2100.

  10. Identification of male gametogenesis expressed genes from the scallop Nodipecten subnodosus by suppressive subtraction hybridization and pyrosequencing.

    Directory of Open Access Journals (Sweden)

    Raúl Llera-Herrera

    Full Text Available Despite the great advances in sequencing technologies, genomic and transcriptomic information for marine non-model species with ecological, evolutionary, and economical interest is still scarce. In this work we aimed to identify genes expressed during spermatogenesis in the functional hermaphrodite scallop Nodipecten subnodosus (Mollusca: Bivalvia: Pectinidae, with the purpose of obtaining a panel of genes that would allow for the study of differentially transcribed genes between diploid and triploid scallops in the context of meiotic arrest and reproductive sterility. Because our aim was to isolate genes involved in meiosis and other testis maturation-related processes, we generated suppressive subtractive hybridization libraries of testis vs. inactive gonad. We obtained 352 and 177 ESTs by clone sequencing, and using pyrosequencing (454-Roche we maximized the identified ESTs to 34,276 reads. A total of 1,153 genes from the testis library had a blastx hit and GO annotation, including genes specific for meiosis, spermatogenesis, sex-differentiation, and transposable elements. Some of the identified meiosis genes function in chromosome pairing (scp2, scp3, recombination and DNA repair (dmc1, rad51, ccnb1ip1/hei10, and meiotic checkpoints (rad1, hormad1, dtl/cdt2. Gene expression analyses in different gametogenic stages in both sexual regions of the gonad of meiosis genes confirmed that the expression was specific or increased towards the maturing testis. Spermatogenesis genes included known testis-specific ones (kelch-10, shippo1, adad1, with some of these known to be associated to sterility. Sex differentiation genes included one of the most conserved genes at the bottom of the sex-determination cascade (dmrt1. Transcript from transposable elements, reverse transcriptase, and transposases in this library evidenced that transposition is an active process during spermatogenesis in N. subnodosus. In relation to the inactive library, we identified

  11. Effects of free oxygen radicals on Ca2+ release mechanisms in the sarcoplasmic reticulum of scallop (Pecten jacobaeus) adductor muscle.

    Science.gov (United States)

    Burlando, B; Viarengo, A; Pertica, M; Ponzano, E; Orunesu, M

    1997-08-01

    In vitro oxyradical effects on SR Ca2+ regulation were studied by using a SR-containing cell-free preparation from scallop (Pecten jacobaeus) adductor muscle. Ca2+ variations were fluorimetrically detected after incubation with Fluo-3 in the presence of ATP. Exposure to Fe3+/ascorbate produced dose-dependent Ca2+ release from SR vesicles, eventually leading to massive Ca2+ loss. Exposure to hypoxanthine/xanthine oxidase also caused Ca2+ release but at a much slower rate. Pre-incubations with catalase or with the hydroxyl radical scavenger KMBA led to a significant decrease in the Fe3+/ascorbate-induced Ca2+ release rate and to a delay of massive Ca2+ loss. Pre-incubations with GSH or DTT strongly reduced the Ca2+ release caused by Fe3+/ascorbate and, moreover, they prevented massive Ca2+ loss from SR vesicles. Addition of GSH or DTT after Fe3+/ascorbate promptly reduced the Ca2+ release rate and delayed massive Ca2+ release. Pre-incubation with the SR Ca2+ channel blocker ruthenium red strongly reduced the Ca2+ release caused by Fe3+/ascorbate, and also prevented massive Ca2+ loss. In the presence of ruthenium red, Fe3+/ascorbate treatments followed by Ca2+ addition revealed that Ca2+ uptake inhibition was slower than Ca2+ release. Taken together, data showed that free radicals and, in particular, hydroxyl radicals, affected the scallop SR Ca2+ regulation. This mainly occurred through Ca2+ channel opening, most likely triggered by sulfhydryl oxidation, which eventually led to massive Ca2+ release from SR vesicles. The demonstration of a specific effect of oxyradicals on SR Ca2+ channels is in line with their possible involvement in cell signaling.

  12. Remarks on kernel Bayes' rule

    OpenAIRE

    Johno, Hisashi; Nakamoto, Kazunori; Saigo, Tatsuhiko

    2015-01-01

    Kernel Bayes' rule has been proposed as a nonparametric kernel-based method to realize Bayesian inference in reproducing kernel Hilbert spaces. However, we demonstrate both theoretically and experimentally that the prediction result by kernel Bayes' rule is in some cases unnatural. We consider that this phenomenon is in part due to the fact that the assumptions in kernel Bayes' rule do not hold in general.

  13. Comparative mitogenomic analyses of three scallops (Bivalvia: Pectinidae reveal high level variation of genomic organization and a diversity of transfer RNA gene sets

    Directory of Open Access Journals (Sweden)

    Kong Xiaoyu

    2009-05-01

    Full Text Available Abstract Background It can be seen from the available mollusk mitogenomes that the family Pectinidae exhibits the most variation in genome organization. In this study, comparative mitogenomic analyses were performed for three scallops from the subfamily Chlamydinae (Pectinidae, with the goal of characterizing the degree of variability of mitogenome organization and other characteristics among species from the same subfamily and exploring their possible evolution route. Findings The complete or nearly complete mtDNA sequences of scallop Mimachlamys nobilis (17 935 bp, Mizuhopecten yessoensis (20 964 bp and Chlamys farreri (17 035 bp were determined using long PCR amplification and primer walking sequencing strategy. Highly variable size difference of the three genomes resulted primarily from length and number variations of non-coding regions, and the major difference in gene content of the three scallop species are due to varying tRNA gene sets. Only 21, 16, and 17 tRNA genes were detected in the mitogenomes of M. nobilis, M. yessoensis and C. farreri, respectively. Remarkably, no trnS gene could be identified in any of the three scallops. A newly-detected trnA-like sequence within the mitogenome of M. yessoensis seems to exemplify the functional loss of a tRNA gene, and the duplication of trnD in M. yessoensis raises a fundamental question of whether the retention of the tRNA gene copy of 2-tRNAs is easier than that of 4-tRNAs. Analysis of putative evolutionary pathways of gene rearrangement indicates that transposition of neighboring gene blocks may play an important role in the evolution of mitogenomes in scallops. Parsimonious analysis of the genomic variations implies that the mitogenomes of M. yessoensis and C. farreri are likely to derive independently from a common ancestor that was closely related to M. nobilis. Conclusion Comparative mitogenomic analyses among three species from the subfamily Chlamydinae show that the three genomes

  14. BCDC Bay Trail Alignment 2009

    Data.gov (United States)

    California Department of Resources — The Bay Trail provides easily accessible recreational opportunities for outdoor enthusiasts, including hikers, joggers, bicyclists and skaters. It also offers a...

  15. BCDC Bay Trail Alignment 2009

    Data.gov (United States)

    California Department of Resources — The Bay Trail provides easily accessible recreational opportunities for outdoor enthusiasts, including hikers, joggers, bicyclists and skaters. It also offers a...

  16. Nuclear and mtDNA lineage diversity in wild and cultured Pacific lion-paw scallop, Nodipecten subnodosus (Baja California Peninsula, Mexico).

    Science.gov (United States)

    Petersen, Jessica L; Ibarra, Ana Maria; May, Bernie

    2010-01-01

    Pacific lion-paw scallops were collected from natural aggregations in Laguna Ojo de Liebre (Pacific Ocean), the Gulf of California, and from aquaculture facilities for genetic diversity analyses. Mitochondrial DNA sequencing uncovered two highly supported clades separated by 2.5% divergence. Data from ten microsatellite markers suggest individuals from these mitogroups are introgressed, raising questions about the mitotype origin. Some evidence suggests gene flow between La Paz and Ojo de Liebre; otherwise the Gulf of California and Ojo de Liebre are acting as two distinct populations. It is unclear whether translocations between sites have influenced the observed genetic structure or whether gene flow has been facilitated by past geologic events. Finally, scallops spawned for aquaculture are unique from the wild and have significantly less diversity. These results warrant the attention of managers and producers who should work to monitor and conserve genetic diversity in both wild and aquaculture populations.

  17. Steam reforming of tar derived from lignin over pompom-like potassium-promoted iron-based catalysts formed on calcined scallop shell.

    Science.gov (United States)

    Guan, Guoqing; Kaewpanha, Malinee; Hao, Xiaogang; Zhu, Ai-Min; Kasai, Yutaka; Kakuta, Seiji; Kusakabe, Katsuki; Abudula, Abuliti

    2013-07-01

    In order to understand the improvement effect of potassium (K) on the catalytic activity of iron-loaded calcined scallop shell (CS) for the steam reforming tar derived from biomass, various K precursors were applied for the catalyst preparation. It is found that pompom-like iron-based particles with a mesoporous structure were easily formed on the surface of calcined scallop shell (CS) when K2CO3 was used as K precursor while no such kind of microsphere was formed when other kinds of K precursors such as KOH and KNO3 were applied. The optimum K-loading amount for the preparation of this catalyst was investigated. Based on the experimental results obtained, a mechanism for the formation of these microspheres was proposed. This pompom-like potassium-promoted iron-based catalyst showed a better catalytic activity and reusability for the steam reforming of tar derived from lignin.

  18. Proximal scalloped custom-made Relay® stent graft in chronic type B dissection: endovascular repair in a drug abuser patient

    Science.gov (United States)

    Szeberin, Zoltán; Nemes, Balázs; Csobay-Novák, Csaba; Mihály, Zsuzsa; Entz, László

    2016-01-01

    The best solution for enlarging chronic type B aortic dissection is not known. Hybrid surgical and endovascular procedures offer a reliable solution in such circumstances, but technically complex stent-graft designs are sometimes needed when the treatment segment of the aorta presents anatomical challenges. We report a case of a proximally scalloped custom-made stent-graft implantation following left subclavian artery transposition in a formerly cocaine-abuser patient. The one-month follow-up computed tomography angiography showed a proximal endoleak (type Ia) which was successfully solved by coil embolization. Proximally scalloped stent grafts offer a reliable solution in complex aortic dissections involving the supra-aortic branches. PMID:28250982

  19. 扇贝水解调味粉加工技术工艺优化%Optimization of Processing Technology for Scallop Hydrolysate Seasoning Powder

    Institute of Scientific and Technical Information of China (English)

    杨秀敏; 王颉; 刘亚琼

    2011-01-01

    In order to make full use of scallop and increase its added value, crushed scallop adductor muscle was processed into scallop hydrolysate seasoning powder by hydrolysis with flavourzyme and subsequent spray drying. The hydrolysis of scallop adductor muscle was optimized by orthogonal array design based on amino acid nitrogen content in its hydrolysate. On the basis of a three-variable, three-level Box-Benhnken experimental design, response surface methodology was used to optimize the spray drying conditions of scallop adductor muscle hydrolysate. The power yield of spray drying for scallop adductor muscle hydrolysate (Y) was investigated with respect to air inlet temperature (X1), air outlet temperature (X2) and ventilation rate (X3). The optimal hydrolysis conditions were determined as foUows: flavourzyme dosage of 1200 U/g and solid-to-liquid of 1:4 (g/ mL) for a hydrolysis duration of 5 h at 45 ℃ and under these conditions, the amino acid nitrogen content in scallop adductor muscle hydrolysate was (1.03 ± 0.01)%, which was increased by 0.12% - 0.74% when compared with previously reported results. A regression model describing the effects of X1, X2 and X3 on Y was obtained as follows: Y = -2867.5825 + 19.5670X1 + 34.7780X2 + 779.4000X3 - 0.0761X1^2 - 0.2284X22 - 0.0433X3^2. The optimal conditions for spray drying of scallop adductor muscle hydrolysate were air inlet temperature 128.60℃, air outlet temperature 76.15 ℃, ventilation rate 0.9 m^3/min, resulting in a power yield of 64.82%. A product that had a moisture content of 4.09% and was good in solubility, color and flavor was obtained.%为充分利用扇贝资源,提高贝类附加值,对扇贝水解调味粉加工技术进行工艺优化。以碎贝柱为原料,利用正交试验设计研究风味蛋白酶(flavourzyme)不同添加量和酶解条件对扇贝水解液氨基酸态氮(amino acid nitrogen,AAN)含量的影响,运用Box-Benhnken中心组

  20. The Bayes Inference Engine

    Energy Technology Data Exchange (ETDEWEB)

    Hanson, K.M.; Cunningham, G.S.

    1996-04-01

    The authors are developing a computer application, called the Bayes Inference Engine, to provide the means to make inferences about models of physical reality within a Bayesian framework. The construction of complex nonlinear models is achieved by a fully object-oriented design. The models are represented by a data-flow diagram that may be manipulated by the analyst through a graphical programming environment. Maximum a posteriori solutions are achieved using a general, gradient-based optimization algorithm. The application incorporates a new technique of estimating and visualizing the uncertainties in specific aspects of the model.

  1. Refinement of AOAC Official Method 2005.06 liquid chromatography-fluorescence detection method to improve performance characteristics for the determination of paralytic shellfish toxins in king and queen scallops.

    Science.gov (United States)

    Turner, Andrew D; Hatfield, Robert G

    2012-01-01

    AOAC Official Method 2005.06 LC-fluorescence detection (FLD) method is an official alternative to the mouse bioassay for the determination of paralytic shellfish poisoning (PSP) toxins in bivalve shellfish. To validate the method for species of relevance to the UK official control monitoring program, the method performance characteristics were tested for whole king and queen scallops. Validation showed that, while the performance was generally acceptable for the quantitation of non-N-hydroxylated toxins, poor toxin recovery and sensitivity was evident for the analysis of N-hydroxylated toxins following periodate oxidation. These effects occurred in a range of scallop samples with variable temporal and spatial sources. The effects were also noted in other laboratories following a small interlaboratory study. As a result, the method was refined to improve the recovery and sensitivity of analysis following the periodate oxidation step in the PSP method for scallops. Performance improved through alterations to the preparation of the periodate oxidant, use of higher volumes for C18 cleanup, and injection volumes in combination with the use of a king scallop matrix modifier for oxidation of N-hydroxylated toxin calibration standards. A single-laboratory validation of the refined method showed that the selectivity, linearity, sensitivity, recovery, and precision were acceptable and similar to values reported previously for AOAC Official Method 2005.06 in other bivalve species. Results showed the method to be rugged for all parameters investigated, including small changes to the composition of the new periodate reagent utilized in the refined method. The refined scallops LC method was subsequently compared with the European reference method. PSP-positive scallops showed an excellent agreement between the methods for queen and Atlantic scallops, with a small level of positive bias in the LC results for whole king scallops. These differences were related solely to the use of

  2. Risks and benefits of compost-like materials prepared by the thermal treatment of raw scallop hepatopancreas for supplying cadmium and the growth of alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Ushijima, Kensuke; Fukushima, Masami; Kanno, Shinya; Kanno, Itoko; Ohnishi, Mitsuhiro

    2016-01-01

    Scallop hepatopancreas, fishery waste, contains relatively high levels of Cd and organic nitrogen compounds, the latter of which represent a fertilizer. In this study, raw scallop hepatopancreas tissue was thermally treated with sawdust and red loam in the presence of an iron catalyst to produce compost-like materials (CLMs). Two CLM samples were prepared by varying the content of raw scallop hepatopancreas tissue: 46 wt.% for CLM-1 and 18 wt.% for CLM-2. Mixtures of control soil (CTL) and CLMs (CLM content: 10 and 25 wt.%) were examined for the growth of alfalfa (Medicago sativa L.) to evaluate the risks and benefits of using this material for fertilization. The Cd content in shoots and roots of alfalfa, that were grown in the presence of CLMs, was significantly higher than those for the plants grown in the CTL, indicating that Cd had accumulated in the plants from CLMs. The accumulation of Cd in the alfalfa roots was quite high in the case of the 25% CLM-1 sample. However, alfalfa growth was significantly promoted in the presence of 10% CLM-1. This can be attributed to the higher levels of nitrogen and humic substances, which serve as fertilizer components. Although the fertilization effect in case of CLM-1showed a potential benefit, the accumulation of Cd in alfalfa was clearly increased in the presence of both CLMs. In conclusion, the use of CLMs produced from raw scallop hepatopancreas tissue can be considered to have a desirable benefit from standpoint of its use as fertilizer, but is accompanied by a risk of the accumulation of Cd in alfalfa plants.

  3. Calculate and Experimental Study of Scallop Height on Molar Crown%磨牙冠表面残留高度的预测与试验研究

    Institute of Scientific and Technical Information of China (English)

    郝小忠; 程筱胜; 雷小宝

    2011-01-01

    The emergence mechanism of surface scallop height in dental restoration was analyzed in this paper. The theoretical model of the scallop height was derived in the ball - end milling molar crown. And the stepover and feed per tooth were changed so as to study the effect of scallop height. The study results show that stepover was the most important influence factor. The scallop height increased sharply and quickly when stepover filled out. Final taking a molar crown as an example and according the research achievement, the appropriate processing parameters are selected that the surface roughness is consistent with design requirements.%分析了口腔修复中表面残留高度产生的机理,提出了使用球头铣刀加工磨牙冠表面残留高度的数学模型,研究了行距和每齿进给量对残留高度的影响情况.研究结果表明,行距是影响残留高度的最主要的因素,残留高度的大小随行距的变化而变化,行距变大时,残留高度显著增加.最后以口腔修复中具有代表性的磨牙冠为例,结合研究成果,选择合适的加工参数加工出符合设计要求钛合金磨牙冠.

  4. Sea otter studies in Glacier Bay National Park and Preserve: annual report 2002

    Science.gov (United States)

    Bodkin, James L.; Kloecker, Kimberly A.; Esslinger, George G.; Monson, Daniel H.; Coletti, Heather A.; Doherty, Janet

    2003-01-01

    Glacier Bay prior to occupation and foraging by sea otters. Port Althorp sites were chosen to achieve a representative sample of subtidal clam beds already under prolonged foraging pressure by sea otters. There was no direct evidence of otter foraging at any of our Glacier Bay sampling sites. In Glacier Bay, we sampled 15,338 bivalves (average of 1,180/site) representing 14 species of clam, 2 species of mussel, and a single scallop and we sampled 6,917 urchins (average of 513/site). In Port Althorp, we sampled 1,034 bivalves (average of 207/site) representing 14 species of clam. We found only 5 urchins, all S. droebachiensis. Mean densities and biomass of all subtidal clams were significantly greater in Glacier Bay (59.2 and 99/0.25m2 compared to Port Althorp (10.3 and 5.8/0.25m2 (p Our contrasts of subtidal clam populations between Glacier Bay and Port Althorp suggest that clam densities will likely decline by about a factor of six and that clam biomass estimates will decline by more than a factor of ten. Numerically dominant species of clams, P. staminea, S. gigantea, Macoma sp. and Mya sp. were all significantly greater in density and biomass in Glacier Bay, while C. nutalli density was low but significantly higher in Port Althorp. Subtidal clam species diversity was significantly greater in Port Althorp compared to Glacier Bay, although this may simply reflect habitat differences. Sea urchin densities were high in Glacier Bay, while in Port Althorp urchins were virtually absent. Sea otters are now well established in limited areas of the lower portions of Glacier Bay. It is likely that distribution and numbers of sea otters will continue to increase in Glacier Bay in the near future. Glacier Bay supports large and diverse populations of clams that are largely unexploited by sea otters at present. It is predictable that the density and sizes of clam populations will decline in response to otter predation. This will result in fewer opportunities for human harvest, but

  5. Effects of the toxic dinoflagellate, Gymnodinium catenatum on hydrolytic and antioxidant enzymes, in tissues of the giant lions-paw scallop Nodipecten subnodosus.

    Science.gov (United States)

    Estrada, Norma; de Jesús Romero, Maria; Campa-Córdova, Angel; Luna, Antonio; Ascencio, Felipe

    2007-11-01

    This study documents effects of the toxic dinoflagellate Gymnodinium catenatum, a producer of paralytic shellfish poison, on juvenile farmed (5.9+/-0.39 cm) giant lions-paw scallop Nodipecten subnodosus. Scallops were fed bloom concentrations of toxic dinoflagellate G. catenatum for 7 h. The effect of the toxic dinoflagellate in different tissues was determined by analysis of antioxidant enzymes (catalase, superoxide dismutase, gluthathione peroxidase), thiobarbituric acid reactive substances (lipid peroxidation), and hydrolytic enzymes (proteases, glycosidases, phosphatases, lipases, and esterases). Histopathological photos record the effects of the toxic dinoflagellate in various tissues. The results show that juvenile lions-paw scallops produce pseudo-feces, partially close their shell, increase melanization, and aggregate hemocytes. Several enzymes were affected and could serve as biological markers. In general, the adductor muscle was not affected. In the digestive gland, some enzymes could be the result of defensive and digestive processes. Gills and mantle tissue were markedly affected because these sites respond first to toxic dinoflagellates, leading to the idea that proteolytic cascades could be involved.

  6. Growth and survival of the scallop Nodipecten nodosus (Linnaeus, 1758, (Molusca: Pectinidae in different cultivation structures at Praia Grande do Bonete, Ubatuba, SP, Brazil

    Directory of Open Access Journals (Sweden)

    Rogerio Stojanov Bueno

    2010-03-01

    Full Text Available Statistical projections show that aquaculture could represent 40% of the world’s annual seafood production in the next decade. The scallop Nodipecten nodosus presents high commercial value and good culture potential, but there are few studies about its culture in Brazil. This paper aims to evaluate the performance of four different culture structures (three traditional and two alternative regarding growth, survival and simplicity of cleaning off the fouling. Growth was significantly better in the alternative bo-net structure, with 57.6mm after 301 days. Survival was 97.0% in the bo-net structure, 95.6% in the lanter-net and common lantern structures, and 69.2% in the pearl-net structure. There were also significant differences among the fresh weights of fouling attached to the different structures, the highest values being observed in the bo-net and lanter-net structures. Significant differences were not registered among the fouling dry weights. The fresh weights of fouling attached to the shells presented significant differences, with the highest values registered in scallops cultivated in the lanter-net structure. Alternative structures (bo-net and lanter-net can be employed, because they resulted in better growth and survival of the cultivated scallops.

  7. Bayes Multiple Decision Functions

    CERN Document Server

    Wu, Wensong

    2011-01-01

    This paper deals with the problem of simultaneously making many (M) binary decisions based on one realization of a random data matrix X. M is typically large and X will usually have M rows associated with each of the M decisions to make, but for each row the data may be low dimensional. A Bayesian decision-theoretic approach for this problem is implemented with the overall loss function being a cost-weighted linear combination of Type I and Type II loss functions. The class of loss functions considered allows for the use of the false discovery rate (FDR), false nondiscovery rate (FNR), and missed discovery rate (MDR) in assessing the decision. Through this Bayesian paradigm, the Bayes multiple decision function (BMDF) is derived and an efficient algorithm to obtain the optimal Bayes action is described. In contrast to many works in the literature where the rows of the matrix X are assumed to be stochastically independent, we allow in this paper a dependent data structure with the associations obtained through...

  8. 75 FR 29891 - Special Local Regulation; Maggie Fischer Memorial Great South Bay Cross Bay Swim, Great South Bay...

    Science.gov (United States)

    2010-05-28

    ... Swim, Great South Bay, NY, in the Federal Register (74 FR 32428). We did not receive any comments or... published at 74 FR 32428 on July 8, 2009, is adopted as a final rule with the following changes: PART 100... South Bay Cross Bay Swim, Great South Bay, NY AGENCY: Coast Guard, DHS. ACTION: Final rule. SUMMARY:...

  9. Chesapeake Bay: Introduction to an Ecosystem.

    Science.gov (United States)

    Environmental Protection Agency, Washington, DC.

    The Chesapeake Bay is the largest estuary in the contiguous United States. The Bay and its tidal tributaries make up the Chesapeake Bay ecosystem. This document, which focuses of various aspects of this ecosystem, is divided into four major parts. The first part traces the geologic history of the Bay, describes the overall physical structure of…

  10. Bayes multiple decision functions.

    Science.gov (United States)

    Wu, Wensong; Peña, Edsel A

    2013-01-01

    This paper deals with the problem of simultaneously making many (M) binary decisions based on one realization of a random data matrix X. M is typically large and X will usually have M rows associated with each of the M decisions to make, but for each row the data may be low dimensional. Such problems arise in many practical areas such as the biological and medical sciences, where the available dataset is from microarrays or other high-throughput technology and with the goal being to decide which among of many genes are relevant with respect to some phenotype of interest; in the engineering and reliability sciences; in astronomy; in education; and in business. A Bayesian decision-theoretic approach to this problem is implemented with the overall loss function being a cost-weighted linear combination of Type I and Type II loss functions. The class of loss functions considered allows for use of the false discovery rate (FDR), false nondiscovery rate (FNR), and missed discovery rate (MDR) in assessing the quality of decision. Through this Bayesian paradigm, the Bayes multiple decision function (BMDF) is derived and an efficient algorithm to obtain the optimal Bayes action is described. In contrast to many works in the literature where the rows of the matrix X are assumed to be stochastically independent, we allow a dependent data structure with the associations obtained through a class of frailty-induced Archimedean copulas. In particular, non-Gaussian dependent data structure, which is typical with failure-time data, can be entertained. The numerical implementation of the determination of the Bayes optimal action is facilitated through sequential Monte Carlo techniques. The theory developed could also be extended to the problem of multiple hypotheses testing, multiple classification and prediction, and high-dimensional variable selection. The proposed procedure is illustrated for the simple versus simple hypotheses setting and for the composite hypotheses setting

  11. A novel cold-regulated cold shock domain containing protein from scallop Chlamys farreri with nucleic acid-binding activity.

    Directory of Open Access Journals (Sweden)

    Chuanyan Yang

    Full Text Available BACKGROUND: The cold shock domain (CSD containing proteins (CSDPs are one group of the evolutionarily conserved nucleic acid-binding proteins widely distributed in bacteria, plants, animals, and involved in various cellular processes, including adaptation to low temperature, cellular growth, nutrient stress and stationary phase. METHODOLOGY: The cDNA of a novel CSDP was cloned from Zhikong scallop Chlamys farreri (designated as CfCSP by expressed sequence tag (EST analysis and rapid amplification of cDNA ends (RACE approach. The full length cDNA of CfCSP was of 1735 bp containing a 927 bp open reading frame which encoded an N-terminal CSD with conserved nucleic acids binding motif and a C-terminal domain with four Arg-Gly-Gly (RGG repeats. The CSD of CfCSP shared high homology with the CSDs from other CSDPs in vertebrate, invertebrate and bacteria. The mRNA transcripts of CfCSP were mainly detected in the tissue of adductor and also marginally detectable in gill, hepatopancreas, hemocytes, kidney, mantle and gonad of healthy scallop. The relative expression level of CfCSP was up-regulated significantly in adductor and hemocytes at 1 h and 24 h respectively after low temperature treatment (P<0.05. The recombinant CfCSP protein (rCfCSP could bind ssDNA and in vitro transcribed mRNA, but it could not bind dsDNA. BX04, a cold sensitive Escherichia coli CSP quadruple-deletion mutant, was used to examine the cold adaptation ability of CfCSP. After incubation at 17°C for 120 h, the strain of BX04 containing the vector pINIII showed growth defect and failed to form colonies, while strain containing pINIII-CSPA or pINIII-CfCSP grew vigorously, indicating that CfCSP shared a similar function with E. coli CSPs for the cold adaptation. CONCLUSIONS: These results suggest that CfCSP is a novel eukaryotic cold-regulated nucleic acid-binding protein and may function as an RNA chaperone in vivo during the cold adaptation process.

  12. USGS Tampa Bay Pilot Study

    Science.gov (United States)

    Yates, K.K.; Cronin, T. M.; Crane, M.; Hansen, M.; Nayeghandi, A.; Swarzenski, P.; Edgar, T.; Brooks, G.R.; Suthard, B.; Hine, A.; Locker, S.; Willard, D.A.; Hastings, D.; Flower, B.; Hollander, D.; Larson, R.A.; Smith, K.

    2007-01-01

    Many of the nation's estuaries have been environmentally stressed since the turn of the 20th century and will continue to be impacted in the future. Tampa Bay, one the Gulf of Mexico's largest estuaries, exemplifies the threats that our estuaries face (EPA Report 2001, Tampa Bay Estuary Program-Comprehensive Conservation and Management Plan (TBEP-CCMP)). More than 2 million people live in the Tampa Bay watershed, and the population constitutes to grow. Demand for freshwater resources, conversion of undeveloped areas to resident and industrial uses, increases in storm-water runoff, and increased air pollution from urban and industrial sources are some of the known human activities that impact Tampa Bay. Beginning on 2001, additional anthropogenic modifications began in Tampa Bat including construction of an underwater gas pipeline and a desalinization plant, expansion of existing ports, and increased freshwater withdrawal from three major tributaries to the bay. In January of 2001, the Tampa Bay Estuary Program (TBEP) and its partners identifies a critical need for participation from the U.S. Geological Survey (USGS) in providing multidisciplinary expertise and a regional-scale, integrated science approach to address complex scientific research issue and critical scientific information gaps that are necessary for continued restoration and preservation of Tampa Bay. Tampa Bay stakeholders identified several critical science gaps for which USGS expertise was needed (Yates et al. 2001). These critical science gaps fall under four topical categories (or system components): 1) water and sediment quality, 2) hydrodynamics, 3) geology and geomorphology, and 4) ecosystem structure and function. Scientists and resource managers participating in Tampa Bay studies recognize that it is no longer sufficient to simply examine each of these estuarine system components individually, Rather, the interrelation among system components must be understood to develop conceptual and

  13. Island Bay Wilderness study area : Island Bay National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a brief report on a wilderness study area located in the Island Bay National Wildlife Refuge. It discusses the history of the study area, its...

  14. An induced mass spawn of the hermaphroditic lion-paw scallop, Nodipecten subnodosus: genetic assignment of maternal and paternal parentage.

    Science.gov (United States)

    Petersen, Jessica L; Ibarra, Ana M; Ramirez, José L; May, Bernie

    2008-01-01

    The Pacific lion-paw scallop is commonly propagated for aquaculture by induced mass spawns of few individuals. Parentage of a mass spawn of this species has not been evaluated nor has the maternal and paternal contribution of each of these functional hermaphrodites to the progeny. Genotypes of 6 spawners and 374 resulting progeny at 6 microsatellite loci were coupled with mitochondrial DNA sequencing to assign maternal and paternal parentage. After the identification of a high proportion of null alleles (9.7%), microsatellite data revealed that 51.7% of the progenies were full siblings, with a significant, unequal contribution of the 6 spawners to the progeny. Three progenies were the result of self-fertilization. All spawners contributed paternally (though unequally); however, 2 spawners were the maternal parents of all but 7 progenies resulting in a variance effective population size of 3.52. DNA sequencing confirmed 4 microsatellite mutations within 4476 alleles scored, all in the paternal germ line. With minor exception, the loci conformed to Mendelian rules of segregation when null alleles were accounted for, and 2 loci were found to be linked. These results lend insight to the genetic composition of induced mass spawns and provide a basis for the development of more effective spawning techniques.

  15. Production of L-lactic Acid from Biomass Wastes Using Scallop Crude Enzymes and Novel Lactic Acid Bacterium

    Science.gov (United States)

    Yanagisawa, Mitsunori; Nakamura, Kanami; Nakasaki, Kiyohiko

    In the present study, biomass waste raw materials including paper mill sludge, bamboo, sea lettuce, and shochu residue (from a distiller) and crude enzymes derived from inedible and discarded scallop parts were used to produce L-lactic acid for the raw material of biodegradable plastic poly-lactic acid. The activities of cellulase and amylase in the crude enzymes were 22 and 170units/L, respectively, and L-lactic acid was produced from every of the above mentioned biomass wastes, by the method of liquid-state simultaneous saccharification and fermentation (SSF) . The L-lactic acid concentrations produced from sea lettuce and shochu residue, which contain high concentration of starch were 3.6 and 9.3g/L, respectively, and corresponded to greater than 25% of the conversion of glucans contained in these biomass wastes. Furthermore, using the solid state SSF method, concentrations as high as 13g/L of L-lactic acid were obtained from sea lettuce and 26g/L were obtained from shochu residue.

  16. Effect of increased pCO2 on early shell development in great scallop (Pecten maximus Lamarck) larvae

    Science.gov (United States)

    Andersen, S.; Grefsrud, E. S.; Harboe, T.

    2013-02-01

    As a result of high anthropogenic emission of CO2, partial pressure of carbon dioxide (pCO2) in the oceans has increased causing a drop in pH, known as ocean acidification (OA). Numerous studies have shown negative effects on marine invertebrates, and that the early life stages are the most sensitive to OA. We studied the effects on embryo and larvae of great scallop (Pecten maximus L.), using mean pCO2-levels of 477 (ambient), 821, 1184, and 1627 ppm. OA affected both survival and shell growth negatively after seven days. Growth was reduced with 5-10% when pCO2 increased from ambient 477 ppm to 1627 ppm, and survival based on egg number was reduced from 40.4% in the ambient group to 10.7% in the highest pCO2-group. Larvae/embryos stained with calcein one day after fertilization, showed fluorescence in the newly formed shell area indicating calcification of the shell already at the trochophore stage. Shell hinge deformities were observed at elevated pCO2-levels in trochophore larvae after two days. After seven days, deformities in both shell hinge and shell edge were observed in veliger larvae at elevated pCO2-levels. Although the growth showed a moderate reduction, survival rate and increased amount of deformed larvae indicates that P. Maximus larvae are affected by elevated pCO2 levels within the range of what is projected for the next century.

  17. Comparative analysis of the reproductive strategy of lion's paw scallop Nodipecten subnodosus in Baja California Sur, Mexico

    Directory of Open Access Journals (Sweden)

    Marco A Angel-Dapa

    2015-07-01

    Full Text Available The reproductive strategy of lion's paw scallop Nodipecten subnodosus was evaluated in a culturing system in Bahía Tortugas, Baja California Sur, Mexico during an annual cycle, comparing its response with data previously reported at other localities. High frequencies of ripe gonads throughout the year indicate that reproduction was continuous, with two main ripening/spawning events: July-September and December-March. A continuous breeding is also reported for the species in Bahía Magdalena, Bahía Juncalito, and Bahía de Los Angeles. These eutrophic areas are Biological Active Centers where gametogenesis appears to be regulated by the energy taken from recently ingested food following an opportunistic strategy. However, the digestive gland index decreased and the muscle indices increased during one of the breeding peaks, suggesting that some stored reserves are also used to sustain gametogenesis (conservative strategy partially. High incidences of atretic oocytes are likely associated with atypical daily variations in water temperature from May through September (12 to 33°C, or with stressful conditions in the culturing system in summer. Despite this, the culturing system set in Bahía Tortugas appears beneficial for a continuous reproduction of N. subnodosus.

  18. Comparative efficiency in the culture of the scallop Nodipecten nodosus (Linnaeus, 1758 (Bivalvia: Pectinidae at different densities and depths

    Directory of Open Access Journals (Sweden)

    Jaime Fernando Ferreira

    2006-06-01

    Full Text Available Different methods of growth of scallops are used which employ different densities and depths in several parts of the globe. These methods present different efficiencies depending on the location, the species, and the stage of cultivation. In order to establish a recommended growth system for Nodipecten nodosus, survival and growth rates were compared for two densities (50 and 100 seeds per lanternet floor and three depths (4, 9 and 14 m, evaluating the physico-chemical and environmental parameters of the growing-out area. The seeds had an initial length of 23.93mm ± 2.39, and at the end of the experiment, the highest average was approximately 47.97mm ± 4.54 at a depth of 4m, in low density. After 4 month’s experimentation, it was observed that the survival did not differ according to the tested densities and depths (P>0.05. However, the final growth was significantly greater at 4m in low density, when compared to the final growth at a depth of 14m in high density. It was concluded that the most viable culture method for N. nodosus was the one close to the surface (4m, where organic matter presented the lowest rate, and chlorophyll a and final growth rates were found to be the highest, consequently classifying this depth as the most viable during the intermediate culture.

  19. The TEAD/TEF family protein Scalloped mediates transcriptional output of the Hippo growth-regulatory pathway.

    Science.gov (United States)

    Wu, Shian; Liu, Yi; Zheng, Yonggang; Dong, Jixin; Pan, Duojia

    2008-03-01

    The Hippo (Hpo) kinase cascade restricts tissue growth by inactivating the transcriptional coactivator Yorkie (Yki), which regulates the expression of target genes such as the cell death inhibitor diap1 by unknown mechanisms. Here we identify the TEAD/TEF family protein Scalloped (Sd) as a DNA-binding transcription factor that partners with Yki to mediate the transcriptional output of the Hpo growth-regulatory pathway. The diap1 (th) locus harbors a minimal Sd-binding Hpo Responsive Element (HRE) that mediates transcriptional regulation by the Hpo pathway. Sd binds directly to Yki, and a Yki missense mutation that abrogates Sd-Yki binding also inactivates Yki function in vivo. We further demonstrate that sd is required for yki-induced tissue overgrowth and target gene expression, and that sd activity is conserved in its mammalian homolog. Our results uncover a heretofore missing link in the Hpo signaling pathway and provide a glimpse of the molecular events on a Hpo-responsive enhancer element.

  20. Vapor Intrusion Facilities - South Bay

    Data.gov (United States)

    U.S. Environmental Protection Agency — POINT locations for the South Bay Vapor Instrusion Sites were derived from the NPL data for Region 9. One site, Philips Semiconductor, was extracted from the...

  1. Lavaca Bay 1985-1987

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Samples were collected from October 15, 1985 through June 12, 1987 in emergent marsh and non-vegetated habitats throughout the Lavaca Bay system to characterize...

  2. Annual report, Bristol Bay, 1958

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Commercial fishery management activities for Bristol Bay for 1958, including lists of operators, extensive statistics, and descriptions of enforcement activities.

  3. FL BAY SPECTROUT-DIET

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Juvenile spotted seatrout and other sportfish are being monitored annually over a 6-mo period in Florida Bay to assess their abundance over time relative to...

  4. CHWAKA BAY MANGROVE SEDIMENTS, ZANZIBAR

    African Journals Online (AJOL)

    Mohammed-Studies on Benthic denitrification in the Chwaka bay mangrove. Extensive mangrove ... In this case, six sediment cores were taken randomly from the three study sites as above and a ..... Academic Press. Orlando. pp. 277-293.

  5. Annual report, Bristol Bay, 1955

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Commercial fishery management activities for Bristol Bay for 1955, including lists of operators, extensive statistics, descriptions of enforcement activities, and...

  6. Back Bay Wilderness area description

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a description of the lands located within the Back Bay National Wildlife Refuge. Within these lands, it designates which area is suitable for...

  7. Scallop protein with endogenous high taurine and glycine content prevents high-fat, high-sucrose-induced obesity and improves plasma lipid profile in male C57BL/6J mice

    DEFF Research Database (Denmark)

    Tastesen, Hanne Sørup; Keenan, Alison H.; Madsen, Lise

    2014-01-01

    -fasted states. Dietary intake of taurine and glycine correlated negatively with body mass gain and total fat mass, while intake of all other amino acids correlated positively. Furthermore taurine and glycine intake correlated positively with improved plasma lipid profile, i.e., lower levels of plasma lipids...... and higher HDL-to-total-cholesterol ratio. In conclusion, dietary scallop protein completely prevents high-fat, high-sucrose-induced obesity whilst maintaining lean body mass and improving the plasma lipid profile in male C57BL/6J mice......., glycerol and hydroxy-butyrate levels were significantly reduced, indicating reduced lipid mobilization in scallop-fed mice. The plasma HDL-to-total-cholesterol ratio was higher, suggesting increased reverse cholesterol transport or cholesterol clearance in scallop-fed mice in both fasted and non...

  8. Gene expression analyses of essential catch factors in the smooth and striated adductor muscles of larval, juvenile and adult great scallop (Pecten maximus).

    Science.gov (United States)

    Andersen, Øivind; Torgersen, Jacob S; Pagander, Helene H; Magnesen, Thorolf; Johnston, Ian A

    2009-01-01

    The scallop adductor muscle consists of striated fibres responsible for the fast closure of the shells, and smooth fibres able to maintain tension in a prolonged state of contraction called catch. Formation of the force-bearing catch linkages has been demonstrated to be initiated by dephosphorylation of the key catch-regulating factor twitchin by a calcineurin-like phosphatase, while the involvement of other thick filament proteins is uncertain. Here we report on the development of catchability of the adductor smooth muscle in the great scallop (Pecten maximus) by analysing the spatio-temporal gene expression patterns of the myosin regulatory light chain (MLCr), twitchin, myorod and calcineurin using whole mount in situ hybridization and real-time quantitative PCR. The MLCr signal was identified in the retractor and adductor muscles of the pediveliger larvae, and the juvenile and adult scallop displayed abundant mRNA levels of MLCr in the smooth and striated adductor muscles. Twitchin was mainly expressed in the smooth adductor muscle during metamorphosis, whereas the adult striated adductor muscle contained seven-folds higher twitchin mRNA levels compared to the smooth portion. Calcineurin expression predominated in the gonads and in the smooth adductor, and five-folds higher mRNA levels were measured in the smooth than in the striated fibres at the adult stage. In contrast to the other genes examined, the expression of myorod was confined to the smooth adductor muscle suggesting that myorod plays a permissive role in the molluscan catch muscles, which are first required at the vulnerable settlement stage as a component of the predator defence system.

  9. Molecular Cloning, Characterization, and Expression of a Catalase Gene in the Japanese Scallop Mizuhopecten yessoensis Induced in the Presence of Cadmium

    Science.gov (United States)

    Gao, Jialong; Ishizaki, Shoichiro; Nagashima, Yuji

    2016-03-01

    Cadmium (Cd) is known to influence the oxidative status of marine organisms and can induce the formation of reactive oxygen species (ROS). Catalase (CAT) is one of the important enzymes involved in scavenging high levels of ROS. In present study, we cloned CAT cDNA and investigated the response of this enzyme at the transcriptional level in the Japanese scallop Mizuhopecten yessoensis exposed to Cd. The full-length CAT cDNA (MyCAT) of 1,870 nucleotides including a 57 bp 5'-UTR, a coding sequence of 1,500 bp and a 313 bp 3'-UTR were identified from the scallop. The deduced amino acid sequence of MyCAT corresponds to 499 amino acids with predicted molecular weight of 56.48 kDa and contains highly conserved motifs of the proximal heme-binding site RLFSYSTH, proximal active signature FNRERIPERVVHAKGGG and three catalytic amino acid residues His72, Asn145, and Tyr355. Its significant homology to CATs from multiple alignments revealed that MyCAT had a high identity with CATs from other mollusks. CAT mRNA expression analysis revealed that expression level was highest in the digestive gland ( p < 0.01) but weak in muscle. Following exposure to 200 and 400 µg/l of Cd, a high amount of Cd was found to have accumulated in the digestive gland and CAT mRNA expression had significantly increased in this organ among 7-day exposed scallops ( p < 0.001). The result demonstrated that antioxidant enzymes such as CAT play important roles in counteracting Cd stress in M. yessoensis.

  10. A C1q domain containing protein from scallop Chlamys farreri serving as pattern recognition receptor with heat-aggregated IgG binding activity.

    Directory of Open Access Journals (Sweden)

    Leilei Wang

    Full Text Available BACKGROUND: The C1q domain containing (C1qDC proteins refer to a family of all proteins that contain the globular C1q (gC1q domain, and participate in a series of immune responses depending on their gC1q domains to bind a variety of self and non-self binding ligands. METHODOLOGY: In the present study, the mRNA expression patterns, localization, and activities of a C1qDC protein from scallop Chlamys farreri (CfC1qDC were investigated to understand its possible functions in innate immunity. The relative expression levels of CfC1qDC mRNA in hemocytes were all significantly up-regulated after four typical PAMPs (LPS, PGN, β-glucan and polyI:C stimulation. During the embryonic development of scallop, the mRNA transcripts of CfC1qDC were detected in all the stages, and the expression level was up-regulated from D-hinged larva and reached the highest at eye-spot larva. The endogenous CfC1qDC was dominantly located in the hepatopancreas, gill, kidney and gonad of adult scallop through immunofluorescence. The recombinant protein of CfC1qDC (rCfC1qDC could not only bind various PAMPs, such as LPS, PGN, β-glucan as well as polyI:C, but also enhance the phagocytic activity of scallop hemocytes towards Escherichia coli. Meanwhile, rCfC1qDC could interact with human heat-aggregated IgG, and this interaction could be inhibited by LPS. CONCLUSIONS: All these results indicated that CfC1qDC in C. farreri not only served as a PRR involved in the PAMPs recognition, but also an opsonin participating in the clearance of invaders in innate immunity. Moreover, the ability of CfC1qDC to interact with immunoglobulins provided a clue to understand the evolution of classical pathway in complement system.

  11. Effect of increased pCO2 on early shell development in great scallop (Pecten maximus Lamarck larvae

    Directory of Open Access Journals (Sweden)

    T. Harboe

    2013-02-01

    Full Text Available As a result of high anthropogenic emission of CO2, partial pressure of carbon dioxide (pCO2 in the oceans has increased causing a drop in pH, known as ocean acidification (OA. Numerous studies have shown negative effects on marine invertebrates, and that the early life stages are the most sensitive to OA. We studied the effects on embryo and larvae of great scallop (Pecten maximus L., using mean pCO2-levels of 477 (ambient, 821, 1184, and 1627 ppm. OA affected both survival and shell growth negatively after seven days. Growth was reduced with 5–10% when pCO2 increased from ambient 477 ppm to 1627 ppm, and survival based on egg number was reduced from 40.4% in the ambient group to 10.7% in the highest pCO2-group. Larvae/embryos stained with calcein one day after fertilization, showed fluorescence in the newly formed shell area indicating calcification of the shell already at the trochophore stage. Shell hinge deformities were observed at elevated pCO2-levels in trochophore larvae after two days. After seven days, deformities in both shell hinge and shell edge were observed in veliger larvae at elevated pCO2-levels. Although the growth showed a moderate reduction, survival rate and increased amount of deformed larvae indicates that P. Maximus larvae are affected by elevated pCO2 levels within the range of what is projected for the next century.

  12. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini.

    Directory of Open Access Journals (Sweden)

    Toby S Daly-Engel

    Full Text Available BACKGROUND: The scalloped hammerhead shark, Sphyrna lewini, is a large endangered predator with a circumglobal distribution, observed in the open ocean but linked ontogenetically to coastal embayments for parturition and juvenile development. A previous survey of maternal (mtDNA markers demonstrated strong genetic partitioning overall (global Φ(ST = 0.749 and significant population separations across oceans and between discontinuous continental coastlines. METHODOLOGY/PRINCIPAL FINDINGS: We surveyed the same global range with increased sample coverage (N = 403 and 13 microsatellite loci to assess the male contribution to dispersal and population structure. Biparentally inherited microsatellites reveal low or absent genetic structure across ocean basins and global genetic differentiation (F(ST = 0.035 over an order of magnitude lower than the corresponding measures for maternal mtDNA lineages (Φ(ST = 0.749. Nuclear allelic richness and heterozygosity are high throughout the Indo-Pacific, while genetic structure is low. In contrast, allelic diversity is low while population structure is higher for populations at the ends of the range in the West Atlantic and East Pacific. CONCLUSIONS/SIGNIFICANCE: These data are consistent with the proposed Indo-Pacific center of origin for S. lewini, and indicate that females are philopatric or adhere to coastal habitats while males facilitate gene flow across oceanic expanses. This study includes the largest sampling effort and the most molecular loci ever used to survey the complete range of a large oceanic predator, and findings emphasize the importance of incorporating mixed-marker analysis into stock assessments of threatened and endangered shark species.

  13. Global Phylogeography with Mixed-Marker Analysis Reveals Male-Mediated Dispersal in the Endangered Scalloped Hammerhead Shark (Sphyrna lewini)

    Science.gov (United States)

    Daly-Engel, Toby S.; Seraphin, Kanesa D.; Holland, Kim N.; Coffey, John P.; Nance, Holly A.; Toonen, Robert J.; Bowen, Brian W.

    2012-01-01

    Background The scalloped hammerhead shark, Sphyrna lewini, is a large endangered predator with a circumglobal distribution, observed in the open ocean but linked ontogenetically to coastal embayments for parturition and juvenile development. A previous survey of maternal (mtDNA) markers demonstrated strong genetic partitioning overall (global ΦST = 0.749) and significant population separations across oceans and between discontinuous continental coastlines. Methodology/Principal Findings We surveyed the same global range with increased sample coverage (N = 403) and 13 microsatellite loci to assess the male contribution to dispersal and population structure. Biparentally inherited microsatellites reveal low or absent genetic structure across ocean basins and global genetic differentiation (FST = 0.035) over an order of magnitude lower than the corresponding measures for maternal mtDNA lineages (ΦST = 0.749). Nuclear allelic richness and heterozygosity are high throughout the Indo-Pacific, while genetic structure is low. In contrast, allelic diversity is low while population structure is higher for populations at the ends of the range in the West Atlantic and East Pacific. Conclusions/Significance These data are consistent with the proposed Indo-Pacific center of origin for S. lewini, and indicate that females are philopatric or adhere to coastal habitats while males facilitate gene flow across oceanic expanses. This study includes the largest sampling effort and the most molecular loci ever used to survey the complete range of a large oceanic predator, and findings emphasize the importance of incorporating mixed-marker analysis into stock assessments of threatened and endangered shark species. PMID:22253848

  14. 75 FR 36292 - Safety Zone; Bay Swim III, Presque Isle Bay, Erie, PA

    Science.gov (United States)

    2010-06-25

    ... of Presque Isle Bay, Lake Erie, near Erie, Pennsylvania between 9 a.m. to 11 a.m. on June 26, 2010.... The safety zone will encompass specified waters of Presque Isle Bay, Erie, Pennsylvania starting at... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Bay Swim III, Presque Isle Bay, Erie, PA...

  15. 77 FR 18739 - Safety Zone; Bay Swim V, Presque Isle Bay, Erie, PA

    Science.gov (United States)

    2012-03-28

    ... the January 17, 2008, issue of the Federal Register (73 FR 3316). Public Meeting We do not now plan to... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Bay Swim V, Presque Isle Bay, Erie, PA... is intended to restrict vessels from a portion of the Presque Island Bay during the Bay Swim...

  16. 77 FR 35860 - Safety Zone; Bay Swim V, Presque Isle Bay, Erie, PA

    Science.gov (United States)

    2012-06-15

    ..., Erie, PA in the Federal Register (77 FR 18739). We received no letters commenting on the proposed rule... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Bay Swim V, Presque Isle Bay, Erie, PA... restrict vessels from a portion of the Presque Island Bay during the Bay Swim V swimming event. The...

  17. 78 FR 34575 - Safety Zone; Bay Swim VI, Presque Isle Bay, Erie, PA

    Science.gov (United States)

    2013-06-10

    ... FR Federal Register NPRM Notice of Proposed Rulemaking TFR Temporary Final Rule A. Regulatory History... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Bay Swim VI, Presque Isle Bay, Erie, PA... portion of Presque Isle bay during the Bay Swim VI swimming event. This temporary safety zone is...

  18. Humboldt Bay, California Benthic Habitats 2009 Substrate

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

  19. Humboldt Bay, California Benthic Habitats 2009 Geoform

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

  20. Humboldt Bay, California Benthic Habitats 2009 Geodatabase

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

  1. Humboldt Bay, California Benthic Habitats 2009 Biotic

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

  2. SF Bay Water Quality Improvement Fund

    Science.gov (United States)

    EPAs grant program to protect and restore San Francisco Bay. The San Francisco Bay Water Quality Improvement Fund (SFBWQIF) has invested in 58 projects along with 70 partners contributing to restore wetlands, water quality, and reduce polluted runoff.,

  3. Humboldt Bay Benthic Habitats 2009 Aquatic Setting

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Humboldt Bay is the largest estuary in California north of San Francisco Bay and represents a significant resource for the north coast region. Beginning in 2007 the...

  4. Bayes linear statistics, theory & methods

    CERN Document Server

    Goldstein, Michael

    2007-01-01

    Bayesian methods combine information available from data with any prior information available from expert knowledge. The Bayes linear approach follows this path, offering a quantitative structure for expressing beliefs, and systematic methods for adjusting these beliefs, given observational data. The methodology differs from the full Bayesian methodology in that it establishes simpler approaches to belief specification and analysis based around expectation judgements. Bayes Linear Statistics presents an authoritative account of this approach, explaining the foundations, theory, methodology, and practicalities of this important field. The text provides a thorough coverage of Bayes linear analysis, from the development of the basic language to the collection of algebraic results needed for efficient implementation, with detailed practical examples. The book covers:The importance of partial prior specifications for complex problems where it is difficult to supply a meaningful full prior probability specification...

  5. 33 CFR 165.1122 - San Diego Bay, Mission Bay and their Approaches-Regulated navigation area.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false San Diego Bay, Mission Bay and... Coast Guard District § 165.1122 San Diego Bay, Mission Bay and their Approaches—Regulated navigation... waters of San Diego Bay, Mission Bay, and their approaches encompassed by a line commencing at Point La...

  6. 33 CFR 117.622 - West Bay

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false West Bay 117.622 Section 117.622 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Massachusetts § 117.622 West Bay The draw of the West Bay Bridge, mile...

  7. Bayes' postulate for trinomial trials

    Science.gov (United States)

    Diniz, M. A.; Polpo, A.

    2012-10-01

    In this paper, we discuss Bayes' postulate and its interpretation. We extend the binomial trial method proposed by de Finetti [1] to trinomial trials, for which we argue that the consideration of equiprobability a priori for the possible outcomes of the trinomial trials implies that the parameter vector has Dirichlet(1,1) as prior. Based on this result, we agree with Stigler [2] in that the notion in Bayes' postulate stating "absolutely know nothing" is related to the possible outcomes of an experiment and not to "non-information" about the parameter.

  8. Mixed effects of elevated pCO2 on fertilisation, larval and juvenile development and adult responses in the mobile subtidal scallop Mimachlamys asperrima (Lamarck, 1819.

    Directory of Open Access Journals (Sweden)

    Elliot Scanes

    Full Text Available Ocean acidification is predicted to have severe consequences for calcifying marine organisms especially molluscs. Recent studies, however, have found that molluscs in marine environments with naturally elevated or fluctuating CO2 or with an active, high metabolic rate lifestyle may have a capacity to acclimate and be resilient to exposures of elevated environmental pCO2. The aim of this study was to determine the effects of near future concentrations of elevated pCO2 on the larval and adult stages of the mobile doughboy scallop, Mimachlamys asperrima from a subtidal and stable physio-chemical environment. It was found that fertilisation and the shell length of early larval stages of M. asperrima decreased as pCO2 increased, however, there were less pronounced effects of elevated pCO2 on the shell length of later larval stages, with high pCO2 enhancing growth in some instances. Byssal attachment and condition index of adult M. asperrima decreased with elevated pCO2, while in contrast there was no effect on standard metabolic rate or pHe. The responses of larval and adult M. asperrima to elevated pCO2 measured in this study were more moderate than responses previously reported for intertidal oysters and mussels. Even this more moderate set of responses are still likely to reduce the abundance of M. asperrima and potentially other scallop species in the world's oceans at predicted future pCO2 levels.

  9. Yield potential and fruit quality of scallop squash (Cucurbita pepo L. var. patissonina Greb. f. radiata Nois. cultivars grown for processing

    Directory of Open Access Journals (Sweden)

    Eugeniusz Kołota

    2015-10-01

    Full Text Available Scallop squash fruits may be harvested at different stages of development. Small size fruits, intended both for the fresh market and the food industry, have the highest biological value. This study was conducted to determine the yield potential of scallop squash cultivars (‘Polo F1’, ‘Disco’, ‘Gagat’, ‘Okra’, ‘Sunny Delight F1’ grown on mulched (black polyethylene foil or black agrotextile or unmulched soil, and harvested when fruits reached a diameter of 3–6 cm. Based on 3-year average data, the highest marketable and early yield was produced by ‘Sunny Delight F1’. This cultivar is also appreciated by consumers for its yellow colored skin of fruits. Another advantage of this cultivar was its high nutritional value expressed by the highest content of dry matter, vitamin C, polyphenols and minerals (K, P, Ca, Mg, with limited tendency to nitrate accumulation. Among the other cultivars tested, ‘Okra’ showed high yield potential, ‘Gagat’ was a rich source of carotenoids, and ‘Disco’ – polyphenols. Black polyethylene foil and black agrotextile appeared to be equally effective mulching materials. The benefit from the application of mulch was a significant increase in yield without any change in the chemical composition of the fruit.

  10. Backscatter imagery in Jobos Bay

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This image represents a 1x1 meter resolution backscatter mosaic of Jobos Bay, Puerto Rico (in NAD83 UTM 19 North). The backscatter values are in relative 8-bit (0 –...

  11. Crystallization and preliminary X-ray analysis of the Ca{sup 2+}-bound C-terminal lobe of troponin C in complex with a troponin I-derived peptide fragment from Akazara scallop

    Energy Technology Data Exchange (ETDEWEB)

    Yumoto, Fumiaki [Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, Bunkyo-ku, Tokyo 113-8657 (Japan); Department of Physiology II, The Jikei University School of Medicine, 3-19-18 Nishi-shinbashi, Minato-ku, Tokyo 105-8461 (Japan); Nagata, Koji; Miyauchi, Yumiko [Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, Bunkyo-ku, Tokyo 113-8657 (Japan); Ojima, Takao; Tanaka, Hiroyuki; Nishita, Kiyoyoshi [Laboratory of Biochemistry and Biotechnology, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041-8611 (Japan); Ohtsuki, Iwao [Department of Physiology II, The Jikei University School of Medicine, 3-19-18 Nishi-shinbashi, Minato-ku, Tokyo 105-8461 (Japan); Tanokura, Masaru, E-mail: amtanok@mail.ecc.u-tokyo.ac.jp [Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, Bunkyo-ku, Tokyo 113-8657 (Japan)

    2007-06-01

    Recombinant TnC was expressed in Escherichia coli, purified, complexed with a 24-residue synthetic peptide derived from scallop troponin I (TnI) and crystallized. Troponin C (TnC) is the Ca{sup 2+}-binding component of troponin and triggers muscle contraction. TnC of the invertebrate Akazara scallop can bind only one Ca{sup 2+} at the C-terminal EF-hand motif. Recombinant TnC was expressed in Escherichia coli, purified, complexed with a 24-residue synthetic peptide derived from scallop troponin I (TnI) and crystallized. The crystals diffracted X-rays to 1.80 Å resolution and belonged to space group P2{sub 1}2{sub 1}2{sub 1}, with unit-cell parameters a = 32.1, b = 42.2, c = 60.0 Å. The asymmetric unit was assumed to contain one molecular complex of the Akazara scallop TnC C-lobe and TnI fragment, with a Matthews coefficient of 1.83 Å{sup 3} Da{sup −1} and a solvent content of 33.0%.

  12. Effect of increased pCO2 level on early shell development in great scallop (Pecten maximus Lamarck larvae

    Directory of Open Access Journals (Sweden)

    S. Andersen

    2013-10-01

    Full Text Available As a result of high anthropogenic CO2 emissions, the concentration of CO2 in the oceans has increased, causing a decrease in pH, known as ocean acidification (OA. Numerous studies have shown negative effects on marine invertebrates, and also that the early life stages are the most sensitive to OA. We studied the effects of OA on embryos and unfed larvae of the great scallop (Pecten maximus Lamarck, at pCO2 levels of 469 (ambient, 807, 1164, and 1599 μatm until seven days after fertilization. To our knowledge, this is the first study on OA effects on larvae of this species. A drop in pCO2 level the first 12 h was observed in the elevated pCO2 groups due to a discontinuation in water flow to avoid escape of embryos. When the flow was restarted, pCO2 level stabilized and was significantly different between all groups. OA affected both survival and shell growth negatively after seven days. Survival was reduced from 45% in the ambient group to 12% in the highest pCO2 group. Shell length and height were reduced by 8 and 15%, respectively, when pCO2 increased from ambient to 1599 μatm. Development of normal hinges was negatively affected by elevated pCO2 levels in both trochophore larvae after two days and veliger larvae after seven days. After seven days, deformities in the shell hinge were more connected to elevated pCO2 levels than deformities in the shell edge. Embryos stained with calcein showed fluorescence in the newly formed shell area, indicating calcification of the shell at the early trochophore stage between one and two days after fertilization. Our results show that P. maximus embryos and early larvae may be negatively affected by elevated pCO2 levels within the range of what is projected towards year 2250, although the initial drop in pCO2 level may have overestimated the effect of the highest pCO2 levels. Future work should focus on long-term effects on this species from hatching, throughout the larval stages, and further into the

  13. An investigation of endocrine disrupting effects and toxic mechanisms modulated by benzo[a]pyrene in female scallop Chlamys farreri

    Energy Technology Data Exchange (ETDEWEB)

    Tian, Shuangmei; Pan, Luqing, E-mail: panlq@ouc.edu.cn; Sun, Xiaohua

    2013-11-15

    Highlights: •B[a]P disturbed progesterone, 17β-estradiol and testosterone production in scallop. •B[a]P inhibited 3β-HSD, CYP17 and 17β-HSD expression after a 10-day exposure. •B[a]P of lower dose elevated AHR-CYP1A expression but high dose B[a]P inhibited them. •ER and vitellogenin transcription was consistent with AHR after B[a]P exposure. •B[a]P exposure induced relatively developmental delay and impairment of ovary. -- Abstract: The purpose of this study was to investigate the endocrine disrupting effects induced by benzo[a]pyrene (B[a]P) and explore the underlying mechanisms in mollusks. In this study, sexually mature female Chlamys farreri were exposed to benzo[a]pyrene for 10 days at four different concentrations as 0, 0.025, 0.5 and 10 μg/L. Sex steroids were identified and quantified by electrochemiluminescence immunoassay (ECLIA) method and results showed that exposure to B[a]P exerts great suppression on 17β-estradiol, testosterone production and disrupts progesterone levels in ovary. Transcription of genes were detected and measured by real-time RT-PCR. It showed that at day 10 B[a]P inhibited 3β-HSD, CYP17 and 17β-HSD mRNA expression in a dose-dependent manner, which suggests that they could be potential targets of B[a]P that disrupt steroidogenic machinery. Moreover, 0.025 μg/L B[a]P activated transcription of aryl hydrocarbon receptor (AHR), AHR nuclear translocator (ARNT), CYP1A1 and estrogen receptor (ER), while 10 μg/L B[a]P suppressed all of them. The consistency of their responses to B[a]P exposure implies that AHR action may be involved in invertebrate CYP regulation and ER transcription despite of unknown mechanisms. Additionally, B[a]P exposure could induce ovarian impairment and developmental delay in C. farreri. Overall, sensitivity of C. farreri to endocrine disruption and toxicity suggests that C. farreri is a suitable species for study of endocrine-disrupting effects in marine invertebrates. This study will form a

  14. Seasonal variation in biomarkers in blue mussel (Mytilus edulis), Icelandic scallop (Chlamys islandica) and Atlantic cod (Gadus morhua)-Implications for environmental monitoring in the Barents Sea

    Energy Technology Data Exchange (ETDEWEB)

    Nahrgang, J., E-mail: jasmine.m.nahrgang@uit.no [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Brooks, S.J. [Norwegian Institute for Water Research (NIVA), NO-0349 Oslo (Norway); Evenset, A. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Camus, L. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University Centre In Svalbard (UNIS), NO-9171 Longyearbyen (Norway); Jonsson, M.; Smith, T.J. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Lukina, J. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University of Tromso, Faculty of Biosciences, Fisheries and Economics, Department of Arctic and Marine Biosciences, NO-9037 Tromso (Norway); Frantzen, M. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Giarratano, E. [Centro Nacional Patagonico (CENPAT-CONICET), AR-9120 Puerto Madryn (Argentina); Renaud, P.E. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University Centre In Svalbard (UNIS), NO-9171 Longyearbyen (Norway)

    2013-02-15

    In the Barents Sea, the limited data on biological relevant indicators and their responses to various anthropogenic stressors have hindered the development of a consistent scientific basis for selecting indicator species and developing practical procedures for environmental monitoring. Accordingly, the main aim of the present study was to develop a common set of baseline values for contaminants and biomarkers in three species, and to identify their strengths and limitations in monitoring of the Barents Sea. Blue mussel (Mytilus edulis), Icelandic scallop (Chlamys islandica) and Atlantic cod (Gadus morhua) were sampled from a north Norwegian fjord in March, June, September and December 2010. Digestive glands from the bivalve species and liver from Atlantic cod were analysed for biomarkers of oxidative stress (catalase [CAT], glutathione peroxidase [GPX], glutathione-S-transferase activities [GST], lipid peroxidation as thiobarbituric reactive substances [TBARS] and total oxyradical scavenging capacity [TOSC]), biotransformation (ethoxyresorufine-O-deethylase activity [EROD]) and general stress (lysosomal membrane stability [LMS]). Concentrations of polycyclic aromatic hydrocarbons (PAHs) and metals in the bivalves and PAH metabolites in fish bile were quantified. Finally, energy reserves (total lipids, proteins and carbohydrates) and electron transport system (ETS) activity in the digestive gland of the bivalves and liver of Atlantic cod provided background information for reproductive cycle and general physiological status of the organisms. Blue mussel and Icelandic scallop showed very similar trends in biological cycle, biomarker expression and seasonality. Biomarker baselines in Atlantic cod showed weaker seasonal variability. However, important biological events may have been undetected due to the large time intervals between sampling occasions. Physiological biomarkers such as energy reserves and ETS activity were recommended as complementary parameters to the

  15. Bayes reconstruction of missing teeth

    DEFF Research Database (Denmark)

    Sporring, Jon; Jensen, Katrine Hommelhoff

    2008-01-01

     We propose a method for restoring the surface of tooth crowns in a 3D model of a human denture, so that the pose and anatomical features of the tooth will work well for chewing. This is achieved by including information about the position and anatomy of the other teeth in the mouth. Our system...... contains two major parts: A statistical model of a selection of tooth shapes and a reconstruction of missing data. We use a training set consisting of 3D scans of dental cast models obtained with a laser scanner, and we have build a model of the shape variability of the teeth, their neighbors...... regularization of the log-likelihood estimate based on differential geometrical properties of teeth surfaces, and we show general conditions under which this may be considered a Bayes prior.Finally we use Bayes method to propose the reconstruction of missing data, for e.g. finding the most probable shape...

  16. Nelson River and Hudson Bay

    Science.gov (United States)

    2002-01-01

    Rivers that empty into large bodies of water can have a significant impact on the thawing of nearshore winter ice. This true-color Moderate Resolution Imaging Spectroradiometer (MODIS) image from May 18, 2001, shows the Nelson River emptying spring runoff from the Manitoba province to the south into the southwestern corner of Canada's Hudson Bay. The warmer waters from more southern latitudes hasten melting of ice near the shore, though some still remained, perhaps because in shallow coastal waters, the ice could have been anchored to the bottom. High volumes of sediment in the runoff turned the inflow brown, and the rim of the retreating ice has taken on a dirty appearance even far to the east of the river's entrance into the Bay. The sediment would have further hastened the melting of the ice because its darker color would have absorbed more solar radiation than cleaner, whiter ice. Image courtesy Jacques Descloitres, MODIS Land Rapid Response Team at NASA GSFC

  17. Probability Theory without Bayes' Rule

    OpenAIRE

    Rodriques, Samuel G.

    2014-01-01

    Within the Kolmogorov theory of probability, Bayes' rule allows one to perform statistical inference by relating conditional probabilities to unconditional probabilities. As we show here, however, there is a continuous set of alternative inference rules that yield the same results, and that may have computational or practical advantages for certain problems. We formulate generalized axioms for probability theory, according to which the reverse conditional probability distribution P(B|A) is no...

  18. Zooplankton Biomass Data from Prince William Sound, Icy Bay and Yakutat Bay, Alaska 2010-2011

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This dataset includes zooplankton biomass from Prince William Sound, Icy Bay and Yakutat Bay, Alaska. Zooplankton were sampled with a ring net (0.6 m diameter with...

  19. Lithospheric Architecture Beneath Hudson Bay

    Science.gov (United States)

    Porritt, R. W.; Miller, M. S.; Darbyshire, F. A.

    2015-12-01

    Hudson Bay overlies some of the thickest Precambrian lithosphere on Earth, whose internal structures contain important clues to the earliest workings of plate formation. The terminal collision, the Trans-Hudson Orogen, brought together the Western Churchill craton to the northwest and the Superior craton to the southeast. These two Archean cratons along with the Paleo-Proterozoic Trans-Hudson internides, form the core of the North American craton. We use S to P converted wave imaging and absolute shear velocity information from a joint inversion of P to S receiver functions, new ambient noise derived phase velocities, and teleseismic phase velocities to investigate this region and determine both the thickness of the lithosphere and the presence of internal discontinuities. The lithosphere under central Hudson Bay approaches 􏰂350 km thick but is thinner (􏰂200-250 km) around the periphery of the Bay. Furthermore, the amplitude of the lithosphere-asthenosphere boundary (LAB) conversion from the S receiver functions is unusually large for a craton, suggesting a large thermal contrast across the LAB, which we interpret as direct evidence of the thermal insulation effect of continents on the asthenosphere. Within the lithosphere, midlithospheric discontinuities, significantly shallower than the base of the lithosphere, are often imaged, suggesting the mechanisms that form these layers are common. Lacking time-history information, we infer that these discontinuities reflect reactivation of formation structures during deformation of the craton.

  20. Simulation of Pollutant Transport in Marmaris Bay

    Institute of Scientific and Technical Information of China (English)

    Lale BALAS

    2001-01-01

    The circulation pattern and the pollutant transport in the Marmaris Bay are simulated by the developed three-dimensional baroclinic model. The Marmaris Bay is located at the Mediterranean Sea coast of Turkey. Since the sp ring tidal range is typically 20~30 cm, the dominant forcing for the circulation and water exchange is due to the wind action. In the Marmaris Bay, there is sea outfall discharging directly into the bay, and that threats the bay water quality significantly. The current patterns in the vicinity of the outfall have been observed by tracking drogues which are moved by currents at different water depths. In the simulations of pollutant transport, the coliforms-counts is used as the tracer.The model provides realistic predictions for the circulation and pollutant transport in the Marmaris Bay. The transport model component predictions well agree with the results of a laboratory model study.

  1. Fermentation process and nutritional analysis of scallop skirt sauce%扇贝裙边酱发酵工艺及营养成分分析的研究

    Institute of Scientific and Technical Information of China (English)

    王晓茹; 王颉; 张亮

    2011-01-01

    为了降低扇贝酱产品成本,增加贝类产品的附加值,以扇贝裙边为主要原料,经米曲霉和豆粕制曲,扇贝裙边与豆曲的质量比为4∶1,加入中性蛋白酶2000U/g,添加12%食盐,在40℃恒温培养箱中发酵8d后以1%接种量接种耐盐四联球菌,在30℃恒温培养箱中发酵7d,25℃恒温培养箱中后熟30d,磨细后真空包装、灭菌制成扇贝裙边酱。对其营养成分、理化指标及游离氨基酸分析结果表明:蛋白质含量为20.04g/100g,脂肪含量为0.82g/100g,氨基酸态氮为1.76g/100g,19种游离氨基酸总量为9.82g/100g,游离的必需氨基酸总量为4.16g/100g。以上5个指标除脂肪含量外均显著高于由贝柱和豆粕、贝柱和面粉发酵生产的扇贝豆酱和扇贝面酱。该研究为降低扇贝酱产品成本提供了实验依据。%A fermentation process of scallop skirt sauce was studied to reduce scallop sauce product cost,and to increase added value of shellfish. Scallop skirt and soybean koji(Aspergillus oryzae culture on soybean meal)mixture(4∶ 1 by weight),containing 2000U/g neutral protease and 12% salt,was incubated for 8 days at 40℃,and inoculated with Tetragenococcus halophilus at 1% level. After fermentation at 30℃ for 7 days,and aging at 25℃ for 30 days,the mixture was ground into fine powder. The powder was vacuum packed,sterilized,and named as scallop skirt sauce. Nutritional and amino acid analysis showed that the scallop skirt sauce contains 20. 04g/100g of protein,0. 82g/100g of lipids,1. 76g/100g of amino acid nitrogen,9. 82g/100g of 19 free amino acids,and 4. 16g/100g of free essential amino acids. Except fat content,all other 4 specifications wrer significantly higher than those of scallop soy sauce or scallop flour sauce that were made from scallop with soy meal or flour,respectively. This study provided experimental data to reduce scallop product cost.

  2. 基于底层冷海水的船载扇贝保鲜系统设计及性能试验%Design and performance test of shipboard scallops fresh-keeping system based on bottom cold seawater

    Institute of Scientific and Technical Information of China (English)

    李明智; 张光发; 李秀辰; 邓长辉; 田耕; 史明礼

    2013-01-01

      该文针对船载扇贝的保鲜问题,调查了黄海冷水团在獐子岛集团股份有限公司确权海域的变化,提出了利用养殖海域底层海水保鲜虾夷扇贝(Patinopecten yessoensis)的方式。通过对捕贝作业船保鲜方式的研究,设计了底层冷海水提取系统,并进行了实船改造试验得出以下结论:提取底层冷海水保鲜可使捕捞上来的虾夷扇贝更接近其长期生存的海底环境,减少温度及盐度波动对虾夷扇贝鲜活度的影响,使扇贝缩边及死亡率显著降低;同时底层海水提取系统具有投资小、改造容易及耗能低等优势,改造费用仅为安装制冷机组费用的1/6,耗能仅为制冷装置的1/24,对于受舱室限制而无法安装制冷机组的扇贝采捕船,可以在不占用大量空间的前提下进行改造,对于扇贝运输船可以利用冷水团对扇贝进行保鲜,可大量减少耗能,提高虾夷扇贝鲜活度,符合绿色环保企业发展需求。%Most of Dalian Zhangzidao sea area is influenced by the Yellow Sea cold water mass, which has the characteristics of low temperature and high salt. By analyzing and investigating the refrigeration and fresh-keeping mode of fishing vessels and the cold water mass of the working sea area, a new type of high efficiency fresh-keeping and energy-saving mode was designed. In this mode, the bottom cold seawater is pumped into vessels to be used for freshness of Patinopecten yessoensis when transporting them or fishing for them. A test was be made to prove that the mode is reasonable. The research showed that scallops (Patinopecten yessoensis) with an average shell length: (11±2) cm and an average mass:(10±10) g were collected from the Dalian Zhangzidao sea area. Seawater was pumped from -1m and-25m depths of the Dalian Zhangzidao sea area to be used as experimental seawater. The design mode which was used to pump the bottom cold seawater was installed in the Liao Chang Yu Yun18009 transport

  3. 33 CFR 80.1114 - San Pedro Bay-Anaheim Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false San Pedro Bay-Anaheim Bay, CA. 80.1114 Section 80.1114 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1114 San Pedro Bay—Anaheim Bay,...

  4. 78 FR 45061 - Safety Zone; Sister Bay Marina Fest Fireworks and Ski Show, Sister Bay, WI

    Science.gov (United States)

    2013-07-26

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Sister Bay Marina Fest Fireworks and Ski... intended to restrict vessels from a portion of Sister Bay due to a fireworks display and ski show. This... with the fireworks display and ski show in Sister Bay on August 31, 2013. DATES: This rule is...

  5. 75 FR 73121 - Bandon Marsh, Nestucca Bay, and Siletz Bay National Wildlife Refuges, Coos, Tillamook, and...

    Science.gov (United States)

    2010-11-29

    ... of Neskowin, Oregon. Neskowin Marsh incorporates unique freshwater wetland and bog habitats and... Fish and Wildlife Service Bandon Marsh, Nestucca Bay, and Siletz Bay National Wildlife Refuges, Coos... prepare a comprehensive conservation plan (CCP) for the Bandon Marsh, Nestucca Bay, and Siletz...

  6. 78 FR 39610 - Safety Zone; Big Bay Boom, San Diego Bay; San Diego, CA

    Science.gov (United States)

    2013-07-02

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Big Bay Boom, San Diego Bay; San Diego, CA... temporary safety zones upon the navigable waters of the San Diego Bay for the annual Port of San Diego... Sector San Diego, Coast Guard; telephone 619-278-7261, email d11marineeventssd@uscg.mil . If you have...

  7. 78 FR 29289 - Safety Zone; Big Bay Boom, San Diego Bay, San Diego, CA

    Science.gov (United States)

    2013-05-20

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Big Bay Boom, San Diego Bay, San Diego, CA... establish four temporary safety zones upon the navigable waters of San Diego ] Bay for the Port of San Diego... Management, U.S. Coast Guard Sector San Diego; telephone (619) 278-7261, email John.E.Bannon@uscg.mil . If...

  8. Application of sub-critical water technology for recovery of heavy metal ions from the wastes of Japanese scallop Patinopecten yessoensis.

    Science.gov (United States)

    Tavakoli, Omid; Yoshida, Hiroyuki

    2008-07-15

    Sub-critical water (sub-CW) technology was used as a new technology with environmental and financial benefits for the recovery of harmful heavy metal ions Cd (II), Zn (II), Cu (II), Fe (II), Mn (II) and Ni (II) in the waste of Japanese scallop Patinopecten yessoensis. The metals are responsible for environmental problems owing to the large amount of the waste. This study proposes a new method using sub-CW treatment to recover the metal ions from scallop waste and simultaneously produce harmless and valuable materials. Reactions were conducted in a temperature range of 473-653 K and for reaction times of 1-60 min. After the sub-CW reaction, four phases existed: an oil phase, metal-soap phase, aqueous phase and solid residual. Some oil was hydrolyzed by the sub-CW reaction and converted to free fatty acids and glycerin. Free fatty acids reacted with metal ions and became metal-soap phase. Both the metal-soap phase and oil phase caught almost all metal ions at low and medium reaction temperatures (473-573 K) from original wastes, although the concentrations of the metal ions in the metal-soap phase were much higher than those in the oil phase. With increasing temperature, these two phases decomposed and the metal ions concentrated in solid residual (un-reacted waste). The binding mechanisms in the oil and metal-soap phases are discussed including the key functional groups involved. The maximum concentrations of metal ions in metal-soap phase were 7225 ppm (Fe), 862 ppm (Zn), and 800 ppm (Cd) at 573 K. The aqueous phase showed the lowest concentration of metal ions especially at temperatures above 550 K (~1.5 ppm).

  9. 提高即食扇贝柱品质的技术研究%Processing Technology of Improving the Quality of Instant Scallop Meat

    Institute of Scientific and Technical Information of China (English)

    赵祥忠; 张合亮; 刘新才; 王莹; 张欣欣; 杨晓宙

    2014-01-01

    以新鲜虾夷扇贝为原料,经蒸煮、入味、烘烤、杀菌等工艺处理,制得了即食虾夷扇贝柱产品。入味液中加入0.3%的异抗坏血酸钠、0.2%的L-半胱氨酸、0.04%的甜蜜素和0.04%的I+G,减少白砂糖和味精用量,可有效抑制即食扇贝柱的褐变;植物油中添加0.3%的竹叶黄酮醇取物可保证产品在货架期内无氧化酸败问题;添加25 mg/L的乳酸链球菌素并采用105℃杀菌15 min,产品在37℃下放置25 d未出现腐败变质现象。%Using fresh patinopecten yessoensis, by cooking,tasty,roasting, sterilization, an instant scallop meat products was prepared. In the process of tasty, if we added 0.3%ascorbic acid sodium, 0.2%L-cys, 0.04%sodium cyclamate, 0.04%I+G and reduced the contents of white granulated sugar and aginomoto, the problem of browning in instant scallop meat during shelf period can be solved. When we added 0.3%flavonoids ethanol extracts of bamboo leaves in plant oil, the product has not presented the oxidative rancidity phenomenon during shelf period. When we added 25 mg/L nisin and sterilized at 105 ℃ for about 15 min, the product has not presented the corruption and deterioration phenomenon at 37℃for 25 d.

  10. Chesapeake Bay Program Water Quality Database

    Data.gov (United States)

    U.S. Environmental Protection Agency — The Chesapeake Information Management System (CIMS), designed in 1996, is an integrated, accessible information management system for the Chesapeake Bay Region....

  11. Effects of temperature on oxygen consumption and ammonia excretion by the Haida golden scallop and Yesso scallop,Patinopecten yessoensis%温度对虾夷扇贝普通养殖群体和选育新品种海大金贝呼吸代谢的影响

    Institute of Scientific and Technical Information of China (English)

    姜绪; 杜美荣; 蒋增杰; 方建光; 赵学伟; 张媛

    2016-01-01

    Oxygen consumption rates (ORs), ammonia excretion rates (NRs), andQ10 and oxygen/nitrogen (O/N) ratios of the Haida Golden scallop and Yesso scallop,Patinopecten yessoensis, were measured seasonally from May 2012 to July 2013 under ambient conditions (5.6℃, 10.5℃, 14.4℃, and 21.2℃) using breathing bottles. The results showed that the variations in OR ofPatinopecten yessoensis and Haida Golden scallop were identical at water temperatures of 5.6–21.2℃. OR increased with temperature when water temperature was 14.4℃. Maximum ORs ofP. yessoensis and Haida Golden scal-lop were 1.67 mg/(g·h)and 1.27 mg/(g·h), respectively. The ORs of Haida Golden scallop were significantly lower than those ofP. yessoensis at 5.6 and 14.4℃ (P0.05). The varia-tions in NR ofP. yessoensis and Haida Golden scallop differed. The NR ofP. yessoensisincreased with tempera-ture and peaked at 14.4℃ (0.063 mg·g–1·h–1) and then decreased. NR at 14.4℃was higher than those at 10.5℃ and 21.2℃(P0.05). TheQ10 of OR decreased with tempera-ture. The O/N ratio showed that lipids and carbohydrates were the mainP. yessoensisenergy sources.Haida Golden scallop consumed protein at low temperature, switched to lipid and carbohydrates when the temperature increased, but switched back to protein when the temperature was highest.%2012年5月和9月,2013年3月和6月,在自然水温条件下,采用呼吸瓶法比较了不同温度(5.6℃、10.5℃、14.4℃、21.2℃)下普通养殖虾夷扇贝(Patinopecten yessoensis)和虾夷扇贝选育新品种海大金贝(Haida golden scallop)耗氧率和排氨率的影响。结果表明,在实验设置水温范围内(5.6~21.2℃),普通虾夷扇贝和海大金贝的耗氧率表现出相似的变化趋势。在温度达到14.4℃之前,实验贝耗氧率随温度的升高而增大,而在14.4℃后,则随温度的升高而减小。两种贝最大耗氧率分别为1.67 mg/(g·h)和1.27 mg/(g·h),其中在5.6℃和14.4℃海大金贝耗氧率显

  12. Biología reproductiva de la cornuda común Sphyrna lewini Griffith & Smith (Sphyrnidae en el Golfo de California Reproductive Biology of the Scalloped Hammerhead Shark Sphyrna lewini Griffith & Smith (Sphyrnidae in the Gulf of California

    Directory of Open Access Journals (Sweden)

    Ana María Torres-Huerta

    2008-12-01

    Full Text Available Durante el período de 1994 a 1996 se obtuvieron datos de longitud total (LT, peso total, sexo y madurez gonádica de 1 693 individuos de Sphyrna lewini, capturados en ocho campos pesqueros de tiburón en el Golfo de California. En las hembras la longitud total tuvo un intervalo de 41 a 363 cm, mientras que en los machos fue de 43 a 290 cm. La proporción de sexos en embriones, neonatos y juveniles fue de 1:1, no así en adultos donde las proporciones variaron en las localidades de muestreo. Los machos y hembras alcanzaron la talla de primera madurez a los 170 y 207 cm de LT, respectivamente. El período de gestación tiene una duración aproximada de 11 meses y la fecundidad máxima fue de 32 embriones por hembra. El nacimiento de las crías ocurre en junio, con una talla entre 41 y 53 cm de LT. La presencia de neonatos y hembras grávidas durante el verano en la región central y sureste del Golfo de California sugiere que éstas son dos importantes áreas de nacimiento para la cornuda común en el Golfo de California. Mientras que, la costa este del Golfo de California y la Bahía de La Paz funcionan como área de crianza para los juveniles.Reproductive biology of scalloped hammerhead shark Sphyrna lewini, was investigated in eight shark fishing camps in the Gulf of California (Mexico from 1994 to 1996. A total of 1 693 specimens were determined total length (TL, total weight, sex and the gonadal maturity. The total length range was from 41 to 363 cm for females and from 43 to 290 cm for males. The sex proportion of embryos, neonates and juveniles in most of the cases was 1:1; however, this was not the case for adults, where the proportions varied at the sampling sites. Sexual maturity was reached at 170 cm for males and 207 cm TL for females. The gestation period was 11 months and the highest fecundity was 32 embryos. The June births were between 41 and 53 cm TL. The presence of neonates, gravid females, and small juveniles in the east coast

  13. 33 CFR 117.1101 - Sturgeon Bay.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Sturgeon Bay. 117.1101 Section 117.1101 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY BRIDGES DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Wisconsin § 117.1101 Sturgeon Bay. (a) The draw of the Michigan Street Bridge, mile 4.3 at Sturgeon...

  14. Classification using Hierarchical Naive Bayes models

    DEFF Research Database (Denmark)

    Langseth, Helge; Dyhre Nielsen, Thomas

    2006-01-01

    Classification problems have a long history in the machine learning literature. One of the simplest, and yet most consistently well-performing set of classifiers is the Naïve Bayes models. However, an inherent problem with these classifiers is the assumption that all attributes used to describe...... an instance are conditionally independent given the class of that instance. When this assumption is violated (which is often the case in practice) it can reduce classification accuracy due to “information double-counting” and interaction omission. In this paper we focus on a relatively new set of models......, termed Hierarchical Naïve Bayes models. Hierarchical Naïve Bayes models extend the modeling flexibility of Naïve Bayes models by introducing latent variables to relax some of the independence statements in these models. We propose a simple algorithm for learning Hierarchical Naïve Bayes models...

  15. Asociación del color de la concha de reproductores de Argopecten purpuratus (Lamarck, 1819 con la supervivencia, crecimiento y desarrollo larval de sus progenies Association between shell color of breeds (Lamarck, 1819 and the survival, growth and larval development of their progenies

    Directory of Open Access Journals (Sweden)

    Ricardo M García

    2012-07-01

    Full Text Available Las conchas de moluscos bivalvos marinos son extremadamente diversas en sus patrones de pigmentación y riqueza de colores. Tal diversidad se debe a factores ambientales y genéticos. En bivalvos marinos adultos, individuos con coloraciones de concha poco comunes en las poblaciones silvestres suelen presentar tasas de crecimiento y supervivencia menores que aquellos con colores de concha más frecuentes. Conociendo que la variación del color de la concha en Argopecten purpuratus está bajo control genético, en este trabajo se pone a prueba la hipótesis de que los loci responsables de dicha variación pueden afectar el crecimiento, la supervivencia y la tasa de desarrollo de las larvas de esta especie. Se estimó la supervivencia y el crecimiento en progenies de cruzamientos dirigidos entre individuos de A. purpuratus con colores de concha blanco, naranja y marrón, y se verificó la existencia de diferencias en las tasas de desarrollo. El crecimiento de las larvas producidas en cruzamientos que incluyeron individuos marrones o blancos con naranja no mostraron diferencias entre sí. En cambio, las progenies producto de autofecundaciones de individuos naranja y blancos presentaron tasas de crecimiento significativamente menores que las anteriores y distintas entre sí. Las tasas de desarrollo y de supervivencia, en cambio, no mostraron diferencias entre las progenies de los distintos tipos de cruzamientos. Los resultados sugieren que los genes que controlan la variación del color en las conchas de juveniles y adultos de A. purpuratus afectarían la tasa de crecimiento de sus larvas, pero no la tasa de desarrollo ni su supervivencia.Marine bivalve mollusks are extremely diverse in shell color and pigmentation patterns. Such diversity is affected by environmental and genetic factors. Some evidences in adult marine bivalves shows that individuals with low-frequency shell colors have lower growth rates and/or higher mortalities than those with the

  16. Morphological features in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, K.V.L; Ramana, M.V; Subrahmanyam, V; Krishna, K.S.; Ramprasad, T.; Desa, M.

    -1 J. Ind. Geophys. Union (2000) Vol. 4, No.2, pp. 185-190 Morphological features in the Bay of Bengal K.V.L.N.S.Sarma, M.V.Ramana1 , V.Subrahmanyam1 K.S.Krishna1, T.Ramprasad1 and Maria Desa1 National Institute of Oceanography, Regional Centre 176... of magnetic anomalies, Ramana et al. (1994) inferred some fracture zones. Due to huge sediment overburden in the Bay of Bengal surface expression of these 185 K.V.L.N.S.Sarma et al. Figure la. Bathymetry map of the Bay of Bengal. Contour interval 500 m...

  17. Analysis and Applications API eBay

    OpenAIRE

    ŠIK, Martin

    2013-01-01

    The subject of this bachelor thesis "Analysis and Applications API eBay" is to create application based on the use of Application Programming Interface (API), released by eBay. The theoretical part is focused on explaining the fundamental issue of Internet auctions, e-commmerce, comparsion of auction portals and term "trust" as a key attribute of e-commerce. The practical part is based on analyse of principles and instruments of eBay API and create an application based on this interface. The ...

  18. THz identification and Bayes modeling

    Science.gov (United States)

    Sokolnikov, Andre

    2017-05-01

    THz Identification is a developing technology. Sensing in the THz range potentially gives opportunity for short range radar sensing because THz waves can better penetrate through obscured atmosphere, such as fog, than visible light. The lower scattering of THz as opposed to the visible light results also in significantly better imaging than in IR spectrum. A much higher contrast can be achieved in medical trans-illumination applications than with X-rays or visible light. The same THz radiation qualities produce better tomographical images from hard surfaces, e.g. ceramics. This effect comes from the delay in time of reflected THz pulses detection. For special or commercial applications alike, the industrial quality control of defects is facilitated with a lower cost. The effectiveness of THz wave measurements is increased with computational methods. One of them is Bayes modeling. Examples of this kind of mathematical modeling are considered.

  19. Bayes linear covariance matrix adjustment

    CERN Document Server

    Wilkinson, Darren J

    1995-01-01

    In this thesis, a Bayes linear methodology for the adjustment of covariance matrices is presented and discussed. A geometric framework for quantifying uncertainties about covariance matrices is set up, and an inner-product for spaces of random matrices is motivated and constructed. The inner-product on this space captures aspects of our beliefs about the relationship between covariance matrices of interest to us, providing a structure rich enough for us to adjust beliefs about unknown matrices in the light of data such as sample covariance matrices, exploiting second-order exchangeability and related specifications to obtain representations allowing analysis. Adjustment is associated with orthogonal projection, and illustrated with examples of adjustments for some common problems. The problem of adjusting the covariance matrices underlying exchangeable random vectors is tackled and discussed. Learning about the covariance matrices associated with multivariate time series dynamic linear models is shown to be a...

  20. 76 FR 37641 - Safety Zone; Independence Day Fireworks Celebration for the City of Half Moon Bay, Half Moon Bay, CA

    Science.gov (United States)

    2011-06-28

    ... the City of Half Moon Bay, Half Moon Bay, CA AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a temporary safety zone in the navigable waters of Half Moon Bay, off of Pillar Point Harbor beach, Half Moon Bay, CA in support of the Independence Day...

  1. 78 FR 62293 - Safety Zone, Oyster Festival 30th Anniversary Fireworks Display, Oyster Bay; Oyster Bay, NY

    Science.gov (United States)

    2013-10-15

    ... CFR Part 165 RIN 1625-AA00 Safety Zone, Oyster Festival 30th Anniversary Fireworks Display, Oyster Bay; Oyster Bay, NY AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a temporary safety zone on the navigable waters of Oyster Bay near Oyster Bay, NY for the...

  2. The Liverpool Bay Coastal Observatory

    Science.gov (United States)

    Howarth, John; Palmer, Matthew

    2011-11-01

    A pilot Coastal Observatory has been established in Liverpool Bay which integrates (near) real-time measurements with coupled models and whose results are displayed on the web. The aim is to understand the functioning of coastal seas, their response to natural forcing and the consequences of human activity. The eastern Irish Sea is an apt test site, since it encompasses a comprehensive range of processes found in tidally dominated coastal seas, including near-shore physical and biogeochemical processes influenced by estuarine inflows, where both vertical and horizontal gradients are important. Applications include hypernutrification, since the region receives significantly elevated levels of nutrient inputs, shoreline management (coastal flooding and beach erosion/accretion), and understanding present conditions to predict the impact of climate change (for instance if the number and severity of storms, or of high or low river flows, change). The integrated measurement suite which started in August 2002 covers a range of space and time scales. It includes in situ time series, four to six weekly regional water column surveys, an instrumented ferry, a shore-based HF radar system measuring surface currents and waves, coastal tide gauges and visible and infra-red satellite data. The time series enable definition of the seasonal cycle, its inter-annual variability and provide a baseline from which the relative importance of events can be quantified. A suite of nested 3D hydrodynamic, wave and ecosystem models is run daily, focusing on the observatory area by covering the ocean/shelf of northwest Europe (at 12-km resolution) and the Irish Sea (at 1.8 km), and Liverpool Bay at the highest resolution of 200 m. The measurements test the models against events as they happen in a truly 3D context. All measurements and model outputs are displayed freely on the Coastal Observatory website (http://cobs.pol.ac.uk) for an audience of researchers, education, coastal managers and the

  3. Description of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California

    Science.gov (United States)

    Woodrow, Donald L.; John L. Chin,; Wong, Florence L.; Fregoso, Theresa; Jaffe, Bruce E.

    2017-06-27

    Seventy-two gravity cores were collected by the U.S. Geological Survey in 1990, 1991, and 2000 from San Pablo Bay and Carquinez Strait, California. The gravity cores collected within San Pablo Bay contain bioturbated laminated silts and sandy clays, whole and broken bivalve shells (mostly mussels), fossil tube structures, and fine-grained plant or wood fragments. Gravity cores from the channel wall of Carquinez Strait east of San Pablo Bay consist of sand and clay layers, whole and broken bivalve shells (less than in San Pablo Bay), trace fossil tubes, and minute fragments of plant material.

  4. BENTHIC MACROFAUNAL ALIENS IN WILLAPA BAY

    Science.gov (United States)

    Benthic macrofaunal samples were collected at random stations in Willapa Bay, WA, in four habitats [eelgrass (Zostera marina), Atlantic cordgrass (Spartina alterniflora), mud shrimp (Upogebia pugettensis), ghost shrimp (Neotrypaea californiensis)] in 1996 and in seven habitats (Z...

  5. Delaware River and Upper Bay Sediment Data

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The area of coverage consists of 192 square miles of benthic habitat mapped from 2005 to 2007 in the Delaware River and Upper Delaware Bay. The bottom sediment map...

  6. Corpus ChristiEast Matagorda Bay 1986

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Patterns of habitat utilization were compared among transplanted and natural Spartina alterniflora marshes in the Halls Lake area of Chocolate Bay in the Galveston...

  7. South Bay Salt Ponds : Initial stewardship plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The California Department of Fish and Game and the U.S. Fish and Wildlife Service will operate and maintain the South Bay Salt Ponds under this Initial Stewardship...

  8. Back Bay National Wildlife Refuge: Master Plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Back Bay National Wildlife Refuge, located in the city of Virginia Beach, Virginia, comprises 4,608 acres of barrier beach, fresh and brackish marsh, small...

  9. Historical methyl mercury in San Francisco Bay

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — San Francisco Bay, California is considered a mercury-impaired watershed. Elevated concentrations of mercury are found in water and sediment as well as fish and...

  10. Contours--Drakes Bay and Vicinity, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the bathymetric contours for several seafloor maps of the Drakes Bay and Vicinity map area, California. The vector data file is...

  11. Watermass structure in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sastry, J.S.; Rao, D.P.; Murty, V.S.N.; Sarma, Y.V.B.; Suryanarayana, A.; Babu, M.T.

    The distributions of temperature, salinity thermosteric anomaly, density flux function and stability along 88 degrees E in the Bay of Bengal are presented. The surface salinities showed strong gradients both horizontally and vertically in northern...

  12. FL BAY SPECTROUT-POPULATION STATUS

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Juvenile spotted seatrout and other sportfish are being monitored annually over a 6-mo period in Florida Bay to assess their abundance over time relative to...

  13. Willapa Bay, Washington Benthic Habitats 1995 Geodatabase

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

  14. Willapa Bay, Washington Benthic Habitats 1995 Geoform

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

  15. Willapa Bay, Washington Benthic Habitats 1995 Biotic

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

  16. Willapa Bay, Washington Benthic Habitats 1995 Substrate

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — In June 1995, the Columbia River Estuary Study Taskforce (CREST) acquired 295 true color aerial photographs (1:12,000) of Willapa Bay, Washington, from the State of...

  17. Habitat--Drakes Bay and Vicinity, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the habitat map of the seafloor of the Drakes Bay and Vicinity map area, California. The vector data file is included in...

  18. 2004 Saginaw Bay, Lake Huron, Michigan Lidar

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This metadata document describes the collection and processing of Light Detection and Ranging (LIDAR) data over an area along the coast of Saginaw Bay, Lake Huron,...

  19. Bathymetry--Drakes Bay and Vicinity, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the bathymetry and shaded-relief maps of Drakes Bay and Vicinity, California (raster data file is included in...

  20. Hydrogeomorphic Regions in the Chesapeake Bay Watershed.

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Generalized lithology (rock type) and physiography based on geologic formations were used to characterize hydrgeomorphic regions (HGMR) within the Chesapeake Bay...

  1. Saginaw Bay Restoration Assessment Degree Flowlines

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This represents the flowline network in Sagina Bay Restoration Assessment (SBRA). It is attributed with the number of disconnections between the reach and the...

  2. Differential productivity of Bristol Bay spawning grounds

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Bristol Bay escapement surveys covering a period of several years show that, irrespective of fluctuations in total numbers on a system, certain grounds display a...

  3. Chesapeake Bay Bald Eagle Nesting Survey

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Chesapeake Bay population of breeding bald eagles increased dramatically in 1981 in not only the number of breeding pairs but in the number of nests hatching...

  4. Mercury distribution in the Jiaozhou Bay

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The Jiaozhou Bay is a semi-enclosed bay, Qingdao, China. More than 10 rivers enter the bay, of which most take wastes from industrial and household discharges. According to historical seasonal investigations in May, August, November 1979, the content,distribution, and development of heavy metal mercury are analyzed as a historical reference. Water samples were taken from the surface and bottom. The results revealed clear seasonal and regional changes in both horizontal and vertical directions, and close relation with major discharging rivers and plankton production. The seawater was polluted more seriously in spring than in any other seasons.However, it was the cleanest in winter during which least waste was input with low plankton production. According to historical data,the state of mercury pollution in seawater was worsening in the period, and has been improving in recent years. Terrestrial contamination was the main reason for mercury pollution in the bay.

  5. Pb distribution and translocation in Jiaozhou Bay

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The trends of distribution, translocation and seasonal change of heavy metal Pb were studied based on the surface and bottom water sampling in Jiaozhou Bay in 1979, and compared with those in 1990's. The results showed that the source of Pb in the bay was from wastewater and sewage in the east of Jiaozhou Bay from ocean vessels. Pb concentration was higher in spring and lower in summer and autumn, and remained stable through sedimentation in the bottom layer. The overall water quality was good in 1970's. Compared with the environmental monitoring data of 1995-1999, Pb pollution had become serious. Therefore, more efforts should be made to protect the bay from Pb pollution.

  6. BENTHIC MACROFAUNAL ALIENS IN WILLAPA BAY

    Science.gov (United States)

    Benthic macrofaunal samples were collected at random stations in Willapa Bay, WA, in four habitats [eelgrass (Zostera marina), Atlantic cordgrass (Spartina alterniflora), mud shrimp (Upogebia pugettensis), ghost shrimp (Neotrypaea californiensis)] in 1996 and in seven habitats (Z...

  7. San Antonio Bay 1986-1989

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The effect of salinity on utilization of shallow-water nursery habitats by aquatic fauna was assessed in San Antonio Bay, Texas. Overall, 272 samples were collected...

  8. Bayes Factors via Savage-Dickey Supermodels

    CERN Document Server

    Mootoovaloo, A; Kunz, M

    2016-01-01

    We outline a new method to compute the Bayes Factor for model selection which bypasses the Bayesian Evidence. Our method combines multiple models into a single, nested, Supermodel using one or more hyperparameters. Since the models are now nested the Bayes Factors between the models can be efficiently computed using the Savage-Dickey Density Ratio (SDDR). In this way model selection becomes a problem of parameter estimation. We consider two ways of constructing the supermodel in detail: one based on combined models, and a second based on combined likelihoods. We report on these two approaches for a Gaussian linear model for which the Bayesian evidence can be calculated analytically and a toy nonlinear problem. Unlike the combined model approach, where a standard Monte Carlo Markov Chain (MCMC) struggles, the combined-likelihood approach fares much better in providing a reliable estimate of the log-Bayes Factor. This scheme potentially opens the way to computationally efficient ways to compute Bayes Factors in...

  9. 2002 Willapa Bay LiDAR Project

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NOAA contracted with Spencer B. Gross, Inc. (SBG) to obtain airborne LiDAR of Willapa Bay, Washington during low tide conditions. The LiDAR data was processed to...

  10. Back Bay Wilderness study : Public hearing analysis

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is an analysis of the public hearing that took place on May 15th, 1974 which discussed the Back Bay Wilderness. The analysis shows that there is...

  11. Back Bay Stormwater Monitoring Project Final Report

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The objective of this project was to assess the influx of nutrients and solid material into Back Bay and its tributaries during and immediately following such storm...

  12. Back Bay National Wildlife Refuge regulations

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a collection of regulations pertaining to the Back Bay National Wildlife Refuge. Most of the regulations concern motor vehicle use on the refuge.

  13. Back Bay Wilderness study : Proposed recommendations

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a list of recommendations for the proposed wilderness area on the Back Bay National Wildlife Refuge. The recommendations come as a result of the...

  14. Bathymetry--Offshore Half Moon Bay, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the bathymetry and shaded-relief maps of the Offshore Half Moon Bay, California (raster data file is included in...

  15. Biscayne Bay Florida Bottlenose Dolphin Studies

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — These data sets include a compilation of small vessel based studies of bottlenose dolphins that reside within Biscayne Bay, Florida, adjacent estuaries and nearshore...

  16. Underwater Video Sites in Jobos Bay

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of Jobos Bay, Puerto Rico were mapped and characterized using visual interpretation...

  17. Underwater Video Transects in Jobos Bay

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Shallow-water (<30m) benthic habitat maps of the nearshore marine environment of Jobos Bay, Puerto Rico were mapped and characterized using visual interpretation...

  18. The Daya Bay Reactor Neutrino Experiment

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    On Aug.15, 201l, a new large-scale scientific facility in China, Daya Bay Reactor Neutrino Experiment, started to operate. It is located in Daya Bay Nuclear Power Plant in Guangdong Province, around 50kin to both Hong Kong and Shenzhen City. The main scientific goal is to precisely determine the neutrino mixing angle 013 by detecting neutrinos from the reactors at different distances.

  19. Salt Ponds, South San Francisco Bay

    Science.gov (United States)

    2002-01-01

    higher resolution 1000 pixel-wide image The red and green colors of the salt ponds in South San Francisco Bay are brilliant visual markers for astronauts. The STS-111 crew photographed the bay south of the San Mateo bridge in June, 2002. This photograph is timely because a large number of the salt ponds (more than 16,500 acres) that are owned by Cargill, Inc. will be sold in September for wetlands restoration-a restoration project second in size only to the Florida Everglades project. Rough boundaries of the areas to be restored are outlined on the image. Over the past century, more than 80% of San Francisco Bay's wetlands have been filled and developed or diked off for salt mining. San Francisco Bay has supported salt mining since 1854. Cargill has operated most of the bay's commercial salt ponds since 1978, and had already sold thousands of acres to the State of California and the Don Edwards National Wildlife Refuge. This new transaction will increase San Francisco Bay's existing tidal wetlands by 50%. The new wetlands, to be managed by the California Department of Fish and Game and the U.S. Fish and Wildlife Service, will join the Don Edwards National Wildlife Refuge, and provide valuable habitat for birds, fish and other wildlife. The wetlands will contribute to better water quality and flood control in the bay, and open up more coastline for public enjoyment. Additional information: Cargill Salt Ponds (PDF) Turning Salt Into Environmental Gold Salt Ponds on Way to Becoming Wetlands Historic Agreement Reached to Purchase San Francisco Bay Salt Ponds Astronaut photograph STS111-376-3 was provided by the Earth Sciences and Image Analysis Laboratory at Johnson Space Center. Additional images taken by astronauts and cosmonauts can be viewed at the NASA-JSC Gateway to Astronaut Photography of Earth

  20. A Glance at Bohai Bay Oil Province

    Institute of Scientific and Technical Information of China (English)

    Gao Shoubai

    1995-01-01

    @@ Chinese oil industry keeps on developing in 1994. The oil production of Bohai Bay Oil Province located in East China also keeps on growing. Geologically,the total area of Bohai Bay Basin is about 200 000 km2 and the main structural units are: Liaohe Depression, Huanghua Depression,Jizhong Depression, Linqing Depression, Jiyang Depression, Changwei Depression, Bozhong Depression,Chengning Uplift and Cangjing Uplift (see figure 1). Area of the main structural units is listed in following:

  1. Application of the first internal transcribed spacer (ITS-1) of ribosomal DNA as a molecular marker to population analysis in farrer's scallop Chlamys farreri

    Institute of Scientific and Technical Information of China (English)

    YU Ziniu; WEI Xiaohua; KONG Xiaoyu; YU Shanshan

    2007-01-01

    Sequence variation of the first internal transcribed spacer of ribosomal DNA (ITS-1) was examined and its application to the study of genetic variation was explored in four populations of farrer's scallop Chlamys farreri. ITS-1 fragments,with a length of about 300 bp,of 78 individuals collected from Dalian, Qingdao, Yantai in China and Korea respectively were amplified via PCR, cloned and sequenced. Intra-genomic variation was examined by sequencing several clones of single individuals. Alignment and polymorphism analysis detected 44 haplotypes and 50 polymorphic sites which consist of 30 substitutions and 20 indels, indicating a high level of polymorphisms. Sequence analysis also showed a very low level of intra-individual variation. All these features validated the feasibility of application of ITS-1 fragment to population analysis. Polymorphism analysis showed that the Korea sample has the richest genetic variation, followed by Yantai and Qingdao samples. AMOVA (analysis of molecular variance) showed that the majority (96.26%) of genetic variation was distributed within populations and 3.74% resulted from among populations, but with P<0.05 (= 0.042), indicating that the populations in this study have significant divergence. This output was basically concordant with the result arising from RAPD data and different from that from mitochondrial 16S rDNA sequence data. Discussion on this inconsistency was made accordingly.

  2. Expression of the myostatin gene in the adductor muscle of the Pacific lion-paw scallop Nodipecten subnodosus in association with growth and environmental conditions.

    Science.gov (United States)

    Morelos, Rosa M; Ramírez, José L; García-Gasca, Alejandra; Ibarra, Ana M

    2015-04-01

    The cDNA sequence of the myostatin gene in the Pacific lion-paw Nodipecten subnodosus (Ns-mstn) was characterized, and the temporal expression during grow-out was analyzed for the first time in a scallop. Ns-mstn encodes a 459-amino-acid protein in which two propeptide proteolytic sites were identified, the previously recognized (RSKR) and a second one at position 266-269 aa (RRKR). The alternative furin cleavage site could be related with post-translational processing, or it could be a tissue-specific mechanism for signaling activity. The Ns-mstn transcript was located by in situ hybridization in sarcomeres and around the nucleus of muscle fibers. The temporal expression analysis by qPCR in the adductor muscle showed that Ns-mstn expression was significantly different (P subnodosus as it occurs in vertebrate skeletal muscle although Ns-mstn expression in non-muscle organs/tissues suggests additional functions. © 2015 Wiley Periodicals, Inc.

  3. Deriving Chesapeake Bay Water Quality Standards

    Science.gov (United States)

    Tango, Peter J.; Batiuk, Richard A.

    2013-01-01

    Achieving and maintaining the water quality conditions necessary to protect the aquatic living resources of the Chesapeake Bay and its tidal tributaries has required a foundation of quantifiable water quality criteria. Quantitative criteria serve as a critical basis for assessing the attainment of designated uses and measuring progress toward meeting water quality goals of the Chesapeake Bay Program partnership. In 1987, the Chesapeake Bay Program partnership committed to defining the water quality conditions necessary to protect aquatic living resources. Under section 303(c) of the Clean Water Act, States and authorized tribes have the primary responsibility for adopting water quality standards into law or regulation. The Chesapeake Bay Program partnership worked with U.S. Environmental Protection Agency to develop and publish a guidance framework of ambient water quality criteria with designated uses and assessment procedures for dissolved oxygen, water clarity, and chlorophyll a for Chesapeake Bay and its tidal tributaries in 2003. This article reviews the derivation of the water quality criteria, criteria assessment protocols, designated use boundaries, and their refinements published in six addendum documents since 2003 and successfully adopted into each jurisdiction's water quality standards used in developing the Chesapeake Bay Total Maximum Daily Load.

  4. Gradient Analysis and Classification of Carolina Bay Vegetation: A Framework for Bay Wetlands Conservation and Restoration

    Energy Technology Data Exchange (ETDEWEB)

    Diane De Steven,Ph.D.; Maureen Tone,PhD.

    1997-10-01

    This report address four project objectives: (1) Gradient model of Carolina bay vegetation on the SRS--The authors use ordination analyses to identify environmental and landscape factors that are correlated with vegetation composition. Significant factors can provide a framework for site-based conservation of existing diversity, and they may also be useful site predictors for potential vegetation in bay restorations. (2) Regional analysis of Carolina bay vegetation diversity--They expand the ordination analyses to assess the degree to which SRS bays encompass the range of vegetation diversity found in the regional landscape of South Carolina's western Upper Coastal Plain. Such comparisons can indicate floristic status relative to regional potentials and identify missing species or community elements that might be re-introduced or restored. (3) Classification of vegetation communities in Upper Coastal Plain bays--They use cluster analysis to identify plant community-types at the regional scale, and explore how this classification may be functional with respect to significant environmental and landscape factors. An environmentally-based classification at the whole-bay level can provide a system of templates for managing bays as individual units and for restoring bays to desired plant communities. (4) Qualitative model for bay vegetation dynamics--They analyze present-day vegetation in relation to historic land uses and disturbances. The distinctive history of SRS bays provides the possibility of assessing pathways of post-disturbance succession. They attempt to develop a coarse-scale model of vegetation shifts in response to changing site factors; such qualitative models can provide a basis for suggesting management interventions that may be needed to maintain desired vegetation in protected or restored bays.

  5. 近海捕贝作业平台技术经济论证模型及应用%Technical and economical evaluation model of offshore scallops capture operation platform and its application

    Institute of Scientific and Technical Information of China (English)

    张光发; 张斌; 许家帅; 吕健

    2016-01-01

    为了辅助一种近海捕贝作业平台的方案决策,使其达到较佳经济效果,以解决近海扇贝养殖捕捞生产中的能耗大、劳动强度高、捕捞效率低以及捕捞效果差的问题,该文根据给定的营运条件、捕捞能力和贝类资源情况,对其进行了技术经济论证研究。选取捕贝平台的拖网主机功率、平台跨距、平台锚次横移时间、平台总建造成本、平台拖网速度作为论证的参数,以单位面积捕捞油耗、单位捕捞成本、捕捞效率为经济评价指标,建立了近海捕贝作业平台技术经济论证模型。基于该模型利用比较论证方法对渔船捕捞方式与捕贝作业平台捕捞方式进行了经济性计算,然后对选取的技术经济参数进行了敏感性分析。结果表明:当平台拖网主机功率400~470 kW、平台跨距0.5~3.0 km、平台锚次横移时间2.0 h以下、平台捕捞拖网速度1.4 kn以上、平台总建造成本低于2750万元时,平台捕捞方案比渔船捕捞方案具有明显的优势。实例计算证明,利用该文提出的技术经济论证模型,通过比较分析论证方法,可得到捕捞作业平台的技术参数范围,为新型近海捕贝作业平台的技术参数设计与实施提供参考。%At present, trawl fishing as a traditional method is widely used in shellfish harvesting at home and abroad. However, using this method to catch the scallops has many disadvantages, such as huge energy consumption, high labor intensity, and poor fishing efficiency, which have become the key questions to restrict the sustainable development of marine fishing industry. Therefore, it’s very worth researching alternative scallop fishing equipment to meet the requirements of green development. The offshore scallop capture equipment is made up of platform deck, floating body and mooring, which is a kind of floating offshore engineering structure. This equipment occupies multiple

  6. Biological synopsises for three exotic molluscs, manila clam (Venerupis philippinarum), Pacific oyster (Crassostrea gigas) and Japanese scallop (Mizuhopecten yessoensis) licensed for aquaculture in British Columbia: Sommaires biologiques pour trois mollusques exotiques, palourde Japonaise (Venerupis philippinarum), huître creuse du Pacifique (Crassostrea gigas) et pétoncle Japonais (Mizuhopecten yessoensis) pour lesquels on a accordé un permis d'aquaculture en Colombie-Britannique

    National Research Council Canada - National Science Library

    Gillespie, G.E; Bower, S.M; Marcus, K.L; Kieser, D

    2012-01-01

    ...: Manila clam, Pacific oyster and Japanese scallop. The synopses are designed to meet the information needs for risk assessment under the National Code on Introductions and Transfers of Aquatic Organisms...

  7. BOOK REVIEW OF "CHESAPEAKE BAY BLUES: SCIENCE, POLITICS, AND THE STRUGGLE TO SAVE THE BAY"

    Science.gov (United States)

    This is a book review of "Chesapeake Bay Blues: Science, Politics, and the Struggle to Save the Bay". This book is very well written and provides an easily understandable description of the political challenges faced by those proposing new or more stringent environmental regulat...

  8. 77 FR 21890 - Drawbridge Operation Regulation; Sturgeon Bay Ship Canal, Sturgeon Bay, WI

    Science.gov (United States)

    2012-04-12

    ... so vehicular traffic congestion would not develop on downtown Sturgeon Bay streets due to unscheduled... scheduled basis to reduce potential vehicular traffic congestion in Sturgeon Bay. The Coast Guard did not... that Order. This determination is expected to improve traffic congestion and safety in the vicinity...

  9. 33 CFR 100.112 - Swim the Bay, Narragansett Bay, Narragansett, RI.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Swim the Bay, Narragansett Bay, Narragansett, RI. 100.112 Section 100.112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.112 Swim the...

  10. 77 FR 35844 - Safety Zone; Olde Ellison Bay Days Fireworks Display, Ellison Bay, WI

    Science.gov (United States)

    2012-06-15

    ..., telephone 202-366-9826. SUPPLEMENTARY INFORMATION: Table of Acronyms DHS Department of Homeland Security FR..., Ellison Bay, WI AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is... held on Lake Michigan in Ellison Bay, WI. The Captain of the Port, Sector Lake Michigan has...

  11. Influenza in Bristol Bay, 1919

    Directory of Open Access Journals (Sweden)

    Maria Gilson deValpine

    2015-03-01

    Full Text Available The 1918 influenza pandemic has been blamed for as many as 50 million deaths worldwide. Like all major disasters, the full story of the pandemic includes smaller, less noted episodes that have not attracted historical attention. The story of the 1919 wave of the influenza pandemic in Bristol Bay Alaska is one such lost episode. It is an important story because the most accessible accounts—the Congressional Record and the Coast Guard Report—are inconsistent with reports made by employees, health care workers, and volunteers at the site of the disaster. Salmon fishing industry supervisors and medical officers recorded their efforts to save the region’s Native Alaskans in private company reports. The federal Bureau of Education physician retained wireless transmission, reports, and letters of events. The Coast Guard summarized its work in its Annual Report of 1920. The independent Bureau of Fisheries report to the Department of Commerce reveals the Coast Guard report at striking odds with others and reconciles only one account. This article explores the historical oversight, and attempts to tell the story of the 1919 wave of the pandemic which devastated the Native Alaskan population in this very remote place.

  12. Hierarchical Bayes Ensemble Kalman Filtering

    CERN Document Server

    Tsyrulnikov, Michael

    2015-01-01

    Ensemble Kalman filtering (EnKF), when applied to high-dimensional systems, suffers from an inevitably small affordable ensemble size, which results in poor estimates of the background error covariance matrix ${\\bf B}$. The common remedy is a kind of regularization, usually an ad-hoc spatial covariance localization (tapering) combined with artificial covariance inflation. Instead of using an ad-hoc regularization, we adopt the idea by Myrseth and Omre (2010) and explicitly admit that the ${\\bf B}$ matrix is unknown and random and estimate it along with the state (${\\bf x}$) in an optimal hierarchical Bayes analysis scheme. We separate forecast errors into predictability errors (i.e. forecast errors due to uncertainties in the initial data) and model errors (forecast errors due to imperfections in the forecast model) and include the two respective components ${\\bf P}$ and ${\\bf Q}$ of the ${\\bf B}$ matrix into the extended control vector $({\\bf x},{\\bf P},{\\bf Q})$. Similarly, we break the traditional backgrou...

  13. Bayes and empirical Bayes iteration estimators in two seemingly unrelated regression equations

    Institute of Scientific and Technical Information of China (English)

    WANG; Lichun

    2005-01-01

    For a system of two seemingly unrelated regression equations given by {y1=X1β+ε1,y2=X2γ+ε2, (y1 is an m × 1 vector and y2 is an n × 1 vector, m≠ n), employing the covariance adjusted technique, we propose the parametric Bayes and empirical Bayes iteration estimator sequences for regression coefficients. We prove that both the covariance matrices converge monotonically and the Bayes iteration estimator squence is consistent as well. Based on the mean square error (MSE) criterion, we elaborate the superiority of empirical Bayes iteration estimator over the Bayes estimator of single equation when the covariance matrix of errors is unknown. The results obtained in this paper further show the power of the covariance adjusted approach.

  14. Study on headland-bay sandy coast stability in South China coasts

    Science.gov (United States)

    Yu, Ji-Tao; Chen, Zi-Shen

    2011-03-01

    Headland-bay beach equilibrium planform has been a crucial problem abroad to long-term sandy beach evolution and stabilization, extensively applied to forecast long-term coastal erosion evolvement and the influences of coastal engineering as well as long-term coastal management and protection. However, little concern focuses on this in China. The parabolic relationship is the most widely used empirical relationship for determining the static equilibrium shape of headland-bay beaches. This paper utilizes the relation to predict and classify 31 headland-bay beaches and concludes that these bays cannot achieve the ultimate static equilibrium planform in South China. The empirical bay equation can morphologically estimate beach stabilization state, but it is just a referential predictable means and is difficult to evaluate headland-bay shoreline movements in years and decades. By using Digital Shoreline Analysis System suggested by USGS, the rates of shoreline recession and accretion of these different headland-bay beaches are quantitatively calculated from 1990 to 2000. The conclusions of this paper include that (a) most of these 31 bays maintain relatively stable and the rates of erosion and accretion are relatively large with the impact of man-made constructions on estuarine within these bays from 1990 to 2000; (b) two bays, Haimen Bay and Hailingshan Bay, originally in the quasi-static equilibrium planform determined by the parabolic bay shape equation, have been unstable by the influence of coastal engineering; and (c) these 31 bays have different recession and accretion characters occurring in some bays and some segments. On the one hand, some bays totally exhibit accretion, but some bays show erosion on the whole. Shanwei Bay, Houmen Bay, Pinghai Bay and Yazhou Bay have the similar planforms, characterized by less accretion on the sheltering segment and bigger accretion on the transitional and tangential segments. On the other hand, different segments of some

  15. Fine Sediment Resuspension Dynamics in Moreton Bay

    Institute of Scientific and Technical Information of China (English)

    YOU Zai-jin; YIN Bao-shu

    2007-01-01

    A comprehensive field study has been undertaken to investigate sediment resuspension dynamics in the Moreton Bay, a large semi-enclosed bay situated in South East Queensland, Australia. An instrumented tripod, which housed three current meters, three OBS sensors and one underwater video camera, was used to collect the field data on tides, currents, waves and suspended sediment concentrations at four sites (Sites 1, 2, 4, and 5) in the bay. Site 1 was located at the main entrance, Site 2 at the central bay in deep water, and Sites 4 and 5 at two small bays in shallow water. The bed sediment was fine sand (d50=0.2 mm) at Site 1, and cohesive sediment at the other three sites. Based on the collected field data, it is found that the dominant driving forces for sediment resuspension are a combination of ocean swell and tidal currents at Site 1, tidal currents at Site 2, and wind-waves at Sites 4 and 5. The critical bed shear stress for cohesive sediment resuspension is determined as 0.079 Pa in unidirectional flow at Site 2, and 0.076 Pa in wave-induced oscillatory flow at Site 5.

  16. Accumulation of Enterococcus faecalis and variation of SOD and ACP activities in scallop Pactinopecten yessoensis tissues%粪肠球菌累积对虾夷扇贝免疫酶活性的影响

    Institute of Scientific and Technical Information of China (English)

    李斌; 陈碧鹃; 齐占会; 方建光; 廉伟; 任仲; 王丽丽

    2011-01-01

    Enterococcus faecalis is a common bacterium found in aquatic environment and intestines of warm-blooded animals and human. In summer, it can reach high level in sewage-polluted seawater and be accumulated by scallops. Large numbers of bacteria may constitute significant health risk to cultured animals at high temperature or in other specific conditions. However, the retention of E. faecalis in scallop remains unclear, and information about hosts' growth performance, innate immunity and disease outbreak after a long-term exposure to non-pathogenic fecal bacteria is limited. The present study aims to investigate the relationship between retention of an opportunistic bacterium and variation in immune enzyme activity in the scallop, Pactinopecten yessoensis.The findings of this study will be useful for developing aquaculture probiotics and will provide scientific basis for sustainable aquaculture of bivalves.By bath exposure, the accumulation and distribution of E. faecalis in scallop tissues were analyzed, and the variation in activities of two immunity-related enzymes in haemolymph were also detected. After exposure to seawater inoculum of 5 lg (CFU/mL) E. faecalis for two weeks, the uptake of bacteria at day 1, 3, 5, 7 and 14 and their distribution in scallop tissues were detected by plate counting method respectively. The activity of acid phosphatase (ACP) and superoxide dismutase (SOD) were also determined both in haemocytes and in serum of P.yessoensis. The uptake results showed that at 7 d top level of E. faecalis[5.20 lg(CFU/g)]were tested in scallop tissues, but at 14 d it decreased to the level of 3 d after treatment. However, the rate of bacterial accumulation (RA)was the highest at 1 d, and then significantly decreased (P<0.05). It indicated that the bacterial accumulation rate in scallops decreased with exposure time. The top level of E. faecalis, over ten times higher than the average density of total tissues, was observed in digestive tract, mantle

  17. Sediments of Narragansett Bay acquired in 1960 (MCMASTER60 shapefile)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Gravel, sand, silt, and clay contents were determined for samples from Narragansett Bay and the adjacent Rhode Island Shelf. In the Narragansett Bay system, clayey...

  18. Fishery Management Program Progress Report: Back Bay National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Memorandum containing summary of fishery biologist's visit to Back Bay to remove carp from impoundments at Back Bay National Wildlife Refuge.

  19. 1999 RoxAnn Data Points from Apalachicola Bay, Florida

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Apalachicola Bay National Estuarine Research Reserve and the NOAA Office for Coastal Management worked together to map benthic habitats within Apalachicola Bay,...

  20. Sediment grab data from October 1999 in Apalachicola Bay, Florida

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Apalachicola Bay National Estuarine Research Reserve and the NOAA Office for Coastal Management worked together to map benthic habitats within Apalachicola Bay,...

  1. Biology and subsistence hunting of geese at Chagvan Bay

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Chagvan Bay and Nanvak Bay are known to be important staging and/or stopover areas for large numbers of Pacific Brant (Branta bernicola) and Emperor Geese (Chen...

  2. SF Bay Water Quality Improvement Fund: Projects and Accomplishments

    Science.gov (United States)

    San Francisco Bay Water Quality Improvement Fund (SFBWQIF) projects listed here are part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

  3. Parameter Identification by Bayes Decision and Neural Networks

    DEFF Research Database (Denmark)

    Kulczycki, P.; Schiøler, Henrik

    1994-01-01

    The problem of parameter identification by Bayes point estimation using neural networks is investigated.......The problem of parameter identification by Bayes point estimation using neural networks is investigated....

  4. The birds of Bristol Bay: A challenge to American ornithologist

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This paper discusses the challenges of conserving the habitat and resources of Bristol Bay for generations to come. The ecosystems in Bristol Bay are described, as...

  5. Benthic grab data from October 1999 in Apalachicola Bay, Florida

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Apalachicola Bay National Estuarine Research Reserve and the NOAA Office for Coastal Management worked together to map benthic habitats within Apalachicola Bay,...

  6. Endocrine disrupter - estradiol - in Chesapeake Bay tributaries

    Energy Technology Data Exchange (ETDEWEB)

    Dorabawila, Nelum [University of Maryland Eastern Shore, Princess Anne, MD 21853 (United States); Gupta, Gian [University of Maryland Eastern Shore, Princess Anne, MD 21853 (United States)]. E-mail: gcgupta@umes.edu

    2005-04-11

    Exogenous chemicals that interfere with natural hormonal functions are considered endocrine disrupting chemicals (EDCs). Estradiol (17{beta}-estradiol or E2) is the most potent of all xenoestrogens. Induction of vitellogenin (VTG) production in male fish occurs at E2 concentrations as low as 1 ng l{sup -1}. E2 reaches aquatic systems mainly through sewage and animal waste disposal. Surface water samples from ponds, rivers (Wicomico, Manokin and Pocomoke), sewage treatment plants (STPs), and coastal bays (Assawoman, Monie, Chincoteague, and Tangier Sound - Chesapeake Bay) on the Eastern Shore of Maryland were analyzed for E2 using enzyme linked immuno-sorbent assay (ELISA). E2 concentrations in river waters varied between 1.9 and 6.0 ng l{sup -1}. Highest E2 concentrations in river waters were observed immediately downstream of STPs. E2 concentrations in all the coastal bays tested were 2.3-3.2 ng l{sup -1}.

  7. Bayes' theorem: scientific assessment of experience

    Directory of Open Access Journals (Sweden)

    Lex Rutten

    2010-10-01

    Full Text Available Homeopathy is based on experience and this is a scientific procedure if we follow Bayes' theorem. Unfortunately this is not the case at the moment. Symptoms are added to our materia medica based on absolute occurrence, while Bayes theorem tells us that this should be based on relative occurrence. Bayes theorem can be applied on prospective research, but also on retrospective research and consensus based on a large number of cases. Confirmation bias is an important source of false data in experience based systems like homeopathy. Homeopathic doctors should become more aware of this and longer follow-up of cases could remedy this. The existing system of adding symptoms to our materia medica is obsolete.

  8. Empirical Bayes analysis of single nucleotide polymorphisms

    Directory of Open Access Journals (Sweden)

    Ickstadt Katja

    2008-03-01

    Full Text Available Abstract Background An important goal of whole-genome studies concerned with single nucleotide polymorphisms (SNPs is the identification of SNPs associated with a covariate of interest such as the case-control status or the type of cancer. Since these studies often comprise the genotypes of hundreds of thousands of SNPs, methods are required that can cope with the corresponding multiple testing problem. For the analysis of gene expression data, approaches such as the empirical Bayes analysis of microarrays have been developed particularly for the detection of genes associated with the response. However, the empirical Bayes analysis of microarrays has only been suggested for binary responses when considering expression values, i.e. continuous predictors. Results In this paper, we propose a modification of this empirical Bayes analysis that can be used to analyze high-dimensional categorical SNP data. This approach along with a generalized version of the original empirical Bayes method are available in the R package siggenes version 1.10.0 and later that can be downloaded from http://www.bioconductor.org. Conclusion As applications to two subsets of the HapMap data show, the empirical Bayes analysis of microarrays cannot only be used to analyze continuous gene expression data, but also be applied to categorical SNP data, where the response is not restricted to be binary. In association studies in which typically several ten to a few hundred SNPs are considered, our approach can furthermore be employed to test interactions of SNPs. Moreover, the posterior probabilities resulting from the empirical Bayes analysis of (prespecified interactions/genotypes can also be used to quantify the importance of these interactions.

  9. Lost lake - restoration of a Carolina bay

    Energy Technology Data Exchange (ETDEWEB)

    Hanlin, H.G.; McLendon, J.P. [Univ. of South Carolina, Aiken, SC (United States). Dept. of Biology and Geology; Wike, L.D. [Univ. of South Carolina, Aiken, SC (United States). Dept. of Biology and Geology]|[Westinghouse Savannah River Co., Aiken, SC (United States). Savannah River Technology Center; Dietsch, B.M. [Univ. of South Carolina, Aiken, SC (United States). Dept. of Biology and Geology]|[Univ. of Georgia, Aiken, SC (United States)

    1994-09-01

    Carolina bays are shallow wetland depressions found only on the Atlantic Coastal Plain. Although these isolated interstream wetlands support many types of communities, they share the common features of having a sandy margin, a fluctuating water level, an elliptical shape, and a northwest to southeast orientation. Lost Lake, an 11.3 hectare Carolina bay, was ditched and drained for agricultural production before establishment of the Savannah River Site in 1950. Later it received overflow from a seepage basin containing a variety of chemicals, primarily solvents and some heavy metals. In 1990 a plan was developed for the restoration of Lost Lake, and restoration activities were complete by mid-1991. Lost Lake is the first known project designed for the restoration and recovery of a Carolina bay. The bay was divided into eight soil treatment zones, allowing four treatments in duplicate. Each of the eight zones was planted with eight species of native wetland plants. Recolonization of the bay by amphibians and reptiles is being evaluated by using drift fences with pitfall traps and coverboard arrays in each of the treatment zones. Additional drift fences in five upland habitats were also established. Hoop turtle traps, funnel minnow traps, and dip nets were utilized for aquatic sampling. The presence of 43 species common to the region has been documented at Lost Lake. More than one-third of these species show evidence of breeding populations being established. Three species found prior to the restoration activity and a number of species common to undisturbed Carolina bays were not encountered. Colonization by additional species is anticipated as the wetland undergoes further succession.

  10. Mapping Oyster Reef Habitats in Mobile Bay

    Science.gov (United States)

    Bolte, Danielle

    2011-01-01

    Oyster reefs around the world are declining rapidly, and although they haven t received as much attention as coral reefs, they are just as important to their local ecosystems and economies. Oyster reefs provide habitats for many species of fish, invertebrates, and crustaceans, as well as the next generations of oysters. Oysters are also harvested from many of these reefs and are an important segment of many local economies, including that of Mobile Bay, where oysters rank in the top five commercial marine species both by landed weight and by dollar value. Although the remaining Mobile Bay oyster reefs are some of the least degraded in the world, projected climate change could have dramatic effects on the health of these important ecosystems. The viability of oyster reefs depends on water depth and temperature, appropriate pH and salinity levels, and the amount of dissolved oxygen in the water. Projected increases in sea level, changes in precipitation and runoff patterns, and changes in pH resulting from increases in the amount of carbon dioxide dissolved in the oceans could all affect the viability of oyster reefs in the future. Human activities such as dredging and unsustainable harvesting practices are also adversely impacting the oyster reefs. Fortunately, several projects are already under way to help rebuild or support existing or previously existing oyster reefs. The success of these projects will depend on the local effects of climate change on the current and potential habitats and man s ability to recognize and halt unsustainable harvesting practices. As the extent and health of the reefs changes, it will have impacts on the Mobile Bay ecosystem and economy, changing the resources available to the people who live there and to the rest of the country, since Mobile Bay is an important national source of seafood. This project identified potential climate change impacts on the oyster reefs of Mobile Bay, including the possible addition of newly viable

  11. Migratory birds and marine mammals of the Bristol Bay region: Wildlife narratives for the Bristol Bay Cooperative Management Plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a collection of reports on migratory birds and marine mammals of the Bristol Bay region for the purpose of facilitating the planning process in Bristol Bay....

  12. Naïve Bayes classification in R

    OpenAIRE

    Zhang, Zhongheng

    2016-01-01

    Naïve Bayes classification is a kind of simple probabilistic classification methods based on Bayes’ theorem with the assumption of independence between features. The model is trained on training dataset to make predictions by predict() function. This article introduces two functions naiveBayes() and train() for the performance of Naïve Bayes classification.

  13. 33 CFR 117.323 - Outer Clam Bay

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Outer Clam Bay 117.323 Section... DRAWBRIDGE OPERATION REGULATIONS Specific Requirements Florida § 117.323 Outer Clam Bay The drawspan of the Outer Clam Bay Boardwalk Drawbridge shall open on signal if at least 30 minutes advance notice is given....

  14. Management case study: Tampa Bay, Florida

    Science.gov (United States)

    Morrison, G.; Greening, H.S.; Yates, K.K.

    2012-01-01

    Tampa Bay, Florida,USA, is a shallow,subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of sea grasses and other selected habitat types, to support estuarine-dependent faunal guilds.

  15. Option pricing, Bayes risks and Applications

    OpenAIRE

    Yatracos, Yannis G.

    2013-01-01

    A statistical decision problem is hidden in the core of option pricing. A simple form for the price C of a European call option is obtained via the minimum Bayes risk, R_B, of a 2-parameter estimation problem, thus justifying calling C Bayes (B-)price. The result provides new insight in option pricing, among others obtaining C for some stock-price models using the underlying probability instead of the risk neutral probability and giving R_B an economic interpretation. When logarithmic stock p...

  16. 75 FR 67620 - Temporary Security Zones; San Francisco Bay, Delta Ports, Monterey Bay and Humboldt Bay, CA

    Science.gov (United States)

    2010-11-03

    ... cruise ship, tanker or HIV that is underway, anchored, or moored within the San Francisco Bay and Delta..., within 500 yards ahead, astern and extending 500 yards along either side of any cruise ship, tanker or..., astern and extending 500 yards along either side of any cruise ship, tanker or HIV that is...

  17. Marine littoral diatoms from the Gordon’s bay region of False Bay, Cape Province, South Africa

    CSIR Research Space (South Africa)

    Giffen, MH

    1971-01-01

    Full Text Available and Comic/i for Scientific and Industrial Research, Pretoria (Received: 5.2. 1970) The Gordon?s Bay region occupies the north western corner of False Bay, a large rectangular bay, bounded on the west by the Cape Peninsula ending at Cape Point...

  18. 75 FR 17329 - Safety Zone; Big Bay Fourth of July Fireworks, San Diego Bay, San Diego, CA

    Science.gov (United States)

    2010-04-06

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Big Bay Fourth of July Fireworks, San Diego Bay, San Diego, CA AGENCY: Coast Guard, DHS. ACTION: Notice of proposed rulemaking. SUMMARY: The Coast Guard proposes establishing a temporary safety zone on the navigable waters of the San Diego Bay in...

  19. 76 FR 70480 - Otay River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National...

    Science.gov (United States)

    2011-11-14

    ... Fish and Wildlife Service Otay River Estuary Restoration Project, South San Diego Bay Unit of the San Diego Bay National Wildlife Refuge, California; Environmental Impact Statement AGENCY: Fish and Wildlife... the San Diego Bay National Wildlife Refuge. This notice advises the public that we intend to gather...

  20. 77 FR 57107 - Bandon Marsh, Nestucca Bay, and Siletz Bay National Wildlife Refuges, Coos, Tillamook, and...

    Science.gov (United States)

    2012-09-17

    ... eco-tourism or natural resource-based visitor centers. Nestucca Bay NWR Alternative A: No Action Under... restoration of former coastal prairie on Cannery Hill would be focused on specific life-history parameters...

  1. Contaminants in redhead ducks wintering in Baffin Bay and Redfish Bay, Texas

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — A sample of 39 redhead ducks was collected from Redfish and Baffin Bays on the Texas Coast during the winter of 1988-1989 to obtain baseline information on...

  2. Geology and geomorphology--Drakes Bay and Vicinity Bay Map Area, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the geologic and geomorphic map of the Drakes Bay and Vicinity map area, California. The polygon shapefile is included in...

  3. Geology and geomorphology--Drakes Bay and Vicinity Bay Map Area, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This part of DS 781 presents data for the geologic and geomorphic map of the Drakes Bay and Vicinity map area, California. The polygon shapefile is included in...

  4. Pärnu Bay Golf Club = Pärnu Bay Golf Club / Arhitekt11

    Index Scriptorium Estoniae

    2016-01-01

    Pärnu Bay Golf Club, arhitektid Jürgen Lepper, Anto Savi, Margus Soonets, Janar Toomesso (Arhitekt11), sisearhitektid Liina Vaino, Kaari Metslang, Hannelore Kääramees (Arhitekt11). Kultuurkapitali Arhitektuuri sihtkapitali aastapreemia nominent 2016

  5. Pärnu Bay Golf Club = Pärnu Bay Golf Club / Arhitekt11

    Index Scriptorium Estoniae

    2016-01-01

    Pärnu Bay Golf Club, arhitektid Jürgen Lepper, Anto Savi, Margus Soonets, Janar Toomesso (Arhitekt11), sisearhitektid Liina Vaino, Kaari Metslang, Hannelore Kääramees (Arhitekt11). Kultuurkapitali Arhitektuuri sihtkapitali aastapreemia nominent 2016

  6. Gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This data release contains information on gravity cores that were collected by the U.S. Geological Survey in the area of San Pablo Bay and Carquinez Strait,...

  7. South Bay Salt Pond initial stewardship plan & related Bay Area restoration projects

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Initial Stewardship Plan for the South Bay Salt Pond Restoration Project outlines a process to reduce the salinity of the existing salt ponds and to manage the...

  8. Effects of the dinoflagellate Karenia brevis on larval development in three species of bivalve mollusc from Florida.

    Science.gov (United States)

    Leverone, Jay R; Blake, Norman J; Pierce, Richard H; Shumway, Sandra E

    2006-07-01

    The effects of Karenia brevis (Wilson clone) on larval survival and development of the northern quahog, Mercenaria mercenaria, eastern oyster, Crassostrea virginica and bay scallop, Argopecten irradians, were studied in the laboratory. Larvae were exposed to cultures of whole and lysed cells, with mean total brevetoxin concentrations of 53.8 and 68.9 microgL(-1), respectively. Survival of early (3-day-old) larvae was generally over 85% for all shellfish species at K. brevis densities of 100 cells ml(-1) or less, and not significantly different between whole and lysed culture. At 1000 cells ml(-1), survival was significantly less in lysed culture than whole culture for both M. mercenaria and C. virginica. Survival of late (7-day-old) larvae in all three species was not significantly affected by K. brevis densities of 1000 cells ml(-1) or less. At 5000 cells ml(-1), however, survival was reduced to 37%, 26% and 19% for A. irradians, M. mercenaria and C. virginica, respectively. Development of C. virginica and M. mercenaria larvae was protracted at K. brevis densities of 1000 cells ml(-1). These results suggest that blooms of K. brevis, and particularly their associated brevetoxins, may have detrimental consequences for Florida's shellfisheries by disrupting critical larval processes. Special attention should be paid to blooms of K. brevis where these shellfish occur naturally or where aquaculture and restoration activities are either ongoing or planned.

  9. Discharge between San Antonio Bay and Aransas Bay, southern Gulf Coast, Texas, May-September 1999

    Science.gov (United States)

    East, Jeffery W.

    2001-01-01

    Along the Gulf Coast of Texas, many estuaries and bays are important habitat and nurseries for aquatic life. San Antonio Bay and Aransas Bay, located about 50 and 30 miles northeast, respectively, of Corpus Christi, are two important estuarine nurseries on the southern Gulf Coast of Texas (fig. 1). According to the Texas Parks and Wildlife Department, “Almost 80 percent of the seagrasses [along the Texas Gulf Coast] are located in the Laguna Madre, an estuary that begins just south of Corpus Christi Bay and runs southward 140 miles to South Padre Island. Most of the remaining seagrasses, about 45,000 acres, are located in the heavily traveled San Antonio, Aransas and Corpus Christi Bay areas” (Shook, 2000).Population growth has led to greater demands on water supplies in Texas. The Texas Water Development Board, the Texas Parks and Wildlife Department, and the Texas Natural Resource Conservation Commission have the cooperative task of determining inflows required to maintain the ecological health of the State’s streams, rivers, bays, and estuaries. To determine these inflow requirements, the three agencies collect data and conduct studies on the need for instream flows and freshwater/ saline water inflows to Texas estuaries.To assist in the determination of freshwater inflow requirements, the U.S. Geological Survey (USGS), in cooperation with the Texas Water Development Board, conducted a hydrographic survey of discharge (flow) between San Antonio Bay and Aransas Bay during the period May–September 1999. Automated instrumentation and acoustic technology were used to maximize the amount and quality of data that were collected, while minimizing personnel requirements. This report documents the discharge measured at two sites between the bays during May–September 1999 and describes the influences of meteorologic (wind and tidal) and hydrologic (freshwater inflow) conditions on discharge between the two bays. The movement of water between the bays is

  10. MODELING THE 1958 LITUYA BAY MEGA-TSUNAMI, II

    OpenAIRE

    Charles L. Mader; Michael L. Gittings

    2002-01-01

    Lituya Bay, Alaska is a T-Shaped bay, 7 miles long and up to 2 miles wide. The two arms at the head of the bay, Gilbert and Crillon Inlets, are part of a trench along the Fairweather Fault. On July 8, 1958, an 7.5 Magnitude earthquake occurred along the Fairweather fault with an epicenter near Lituya Bay.A mega-tsunami wave was generated that washed out trees to a maximum altitude of 520 meters at the entrance of Gilbert Inlet. Much of the rest of the shoreline of the Bay was denuded by the t...

  11. The land-sourced pollution in the Jiaozhou Bay

    Institute of Scientific and Technical Information of China (English)

    GAO Zhenhui; YANG Dongfang; QIN Jie; XIANG Lihong; ZHANG Ke

    2008-01-01

    In recent years,natural environment of the Jiaozhou Bay has been changed largely by fast developing industry and agriculture of the cities around,from which wastewaters were generated.The size of the bay has been continuously shrunk with reduced river flows,resulting in serious contamination to the marine lives in the bay.After analyzing the basic historical data,the authors put forward a suggestion of how to protect the bay ecology for sustaining the resources in the Jiaozhou Bay.

  12. Summary report on Bristol Bay murre mortality

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — At least 86,000 common murres died in Bristol Bay, Alaska during a brief period in late April of this year. Evidence suggests that it was a catastrophic event of...

  13. ULF fluctuations at Terra Nova Bay (Antarctica

    Directory of Open Access Journals (Sweden)

    A. Meloni

    2000-06-01

    Full Text Available ULF geomagnetic field measurements in Antarctica are a very important tool for better understanding the dynamics of the Earth’s magnetosphere and its response to the variable solar wind conditions. We review the results obtained in the last few years at the Italian observatory at Terra Nova Bay

  14. The Bay in Place of a Glacier.

    Science.gov (United States)

    Howell, Wayne

    1997-01-01

    The cultural resource specialist at Glacier Bay National Park (Alaska) explains the collaborative efforts of park staff and the Hoonah Tlingit to overcome language and cultural barriers in documenting park place names and clan oral history and traditions. The new park-community relationship, which follows decades of conflict, includes training…

  15. Saginaw Bay, MI LiDAR

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — TASK NAME:(NRCS) Saginaw Bay, MI LiDAR LiDAR Data Acquisition and Processing Production Task USGS Contract No. G10PC00057 Task Order No. G11PD01254 Woolpert Order...

  16. Roebuck Bay Invertebrate and bird Mapping 2006

    NARCIS (Netherlands)

    Piersma, Theunis; Pearson, Grant B.; Hickey, Robert; Dittmann, Sabine; Rogers, Danny I.; Folmer, Eelke; Honkoop, Pieter; Drent, Jan; Goeij, Petra de; Marsh, Loisette

    2006-01-01

    1. This is a report on a survey of the benthic ecology of the intertidal flats along the northern shores of Roebuck Bay in June 2006. In the period 11-20 June we mapped both the invertebrate macrobenthic animals (those retained by a 1 mm sieve) over the whole of the northern intertidal area of Roebu

  17. From Bayes to PDEs in image warping

    DEFF Research Database (Denmark)

    Nielsen, Mads; Markussen, Bo

    2006-01-01

    differential equation (PDE) in the matching function. We treat different choices of matching criteria such as minimal square difference, maximal correlation, maximal mutual information, and several smoothness criteria. All are treated from a Bayes point of view leading to a functional minimization problem...

  18. IRST infrared background analysis of bay environments

    CSIR Research Space (South Africa)

    Schwering, PBW

    2008-04-01

    Full Text Available threats can be present in environments with cluttered backgrounds as well as rapidly varying atmospheric conditions. During trials executed in False Bay a large amount of target, background and atmosphere data was gathered that is of use in analysis...

  19. Padilla Bay: The Estuary Guide. Level 2.

    Science.gov (United States)

    Friesem, Judy; Lynn, Valerie, Ed.

    Estuaries are marine systems that serve as nurseries for animals, links in the migratory pathways, and habitat for a complex community of organisms. This curriculum guide intended for use at the middle school level is designed for use with the on-site program developed by the Padilla Bay National Esturine Research Reserve (Washington). The guide…

  20. Commencement Bay Study. Volume IV. Invertebrates.

    Science.gov (United States)

    1981-12-31

    BAY Taxa Epibenthic Pump Infaunal Core Hydrozoa Hydroida (polyp) + Scyphozoa Scyphozoan medusae + Nemertea + Nematoda + + Turbellaria Polycladida...Occurrence Nemertea 2 0.8 Polychaeta unid. 14 5.9 Armandia brevis 3 1.2 Caitella capitata 6 2.5 Cirratulidae 1 0.4 Eteone longa 1 0.4 Platynereis

  1. Geochemical baseline data, Youngs Bay, Oregon, 1974

    Energy Technology Data Exchange (ETDEWEB)

    McMechan, K.J. (ed.); Johnson, V.G.; Cutshall, N.H.

    1975-04-01

    This report comprises one part of a final report to the Alumax Pacific Aluminum Corporation on the Physical, Chemical and Biological Studies of Youngs Bay''. The data reported herein are the product of the geochemical baseline section of the project. The primary objectives of the geochemical study were: to provide a baseline record of fluoride and selected trace metal levels in Youngs Bay bottom sediment, to identify areas that might function as heavy metal traps, to attempt to determine the recent depositional history of sediment in the bay. In addition to these primary objectives, a number of secondary tasks were undertaken during the study. While time did not allow these additional studies to be carried to completion, preliminary results are included herein because of their potential usefulness in assessing the impact of environmental releases of fluoride to aquatic systems in the vicinity of Youngs Bay or elsewhere. This report is made up of two major sections. In the first, a description of sample collection and analytical procedures is followed by a discussion of the baseline results. Obvious vertical and horizontal patterns of elemental distribution are identified and their origins considered. Problems needed further research are also discussed. In the second section, the data are presented in interpretive, graphical form, as well as in tables. 35 refs., 29 figs., 14 tabs.

  2. PEMANFATAN TEOREMA BAYES DALAM PENENTUAN PENYAKIT THT

    Directory of Open Access Journals (Sweden)

    Sri Winiarti

    2012-05-01

    Full Text Available Dalam konsep pelacakan dalam mencari solusi dengan pendekatan artificial inteligent, ada berbagai metode  yang dapat diterapkan untuk mengatasi masalah ketidakpastian saat proses pelacakan terjadi. Salah satunya adalah teorema bayes. Adanya ketidakpastian pada proses pelacakan dapat terjadi karena adanya perubahan pengetahuan yang ada di dalam sistem. Untuk itu diperlukan adanya suatu metode untuk mengatasi permasalahan tersebut. Dalam penelitian ini telah diterapkan suatu metode untuk mengatasi ketidakpastian dengan teorema Bayes pada kasus pelacakan untuk mendiagnosa penyakit pada THT (Telinga,Hidung dan Tenggorokan.  Subjek pada penelitian ini adalah proses pelacakan untuk menentukan penyakit THT dengan model penalaran forward chaining dan metode kepastiannya menggunakan teorema bayes dengan cara menghitung nilai probabilitas suatu penyakit dan membandingkan probabilitas setiap gejalanya. Model pengembangan perangkat lunak yang digunakan dalam penelitian ini adalah Waterfall. Metode Waterfall diawali dengan analisis data, perancangan sistem, pengkodean menggunakan Visual Basic 6.0, pengujian sistem dengan black box test dan alfa test. Dari penelitian yang dilakukan menghasilkan sebuah perangkat lunak yaitu  yang mampu menentukan penyakit pada THT dengan menerapkan metode bayes untuk mengatasi ketidakpastian. Hasil uji coba sistem menujukkan bahwa aplikasi ini layak dan dapat digunakan.

  3. Bathymetry (2011) for Coral Bay, St. John

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This image represents a LiDAR (Light Detection & Ranging) 0.3x0.3 meter resolution depth surface for Coral Bay, St. John in the U.S. Virgin Islands (USVI). The...

  4. Carolina bays of the Savannah River Plant

    Energy Technology Data Exchange (ETDEWEB)

    Schalles, J.F. (Creighton Univ., Omaha, NE (USA)); Sharitz, R.R.; Gibbons, J.W.; Leversee, G.J.; Knox, J.N. (Savannah River Ecology Lab., Aiken, SC (USA))

    1989-01-01

    Much of the research to date on the Carolina bays of the Savannah River Plant and elsewhere has focused on certain species or on environmental features. Different levels of detail exist for different groups of organisms and reflect the diverse interests of previous investigators. This report summarizes aspects of research to date and presents data from numerous studies. 70 refs., 14 figs., 12 tabs.

  5. Roebuck Bay Invertebrate and bird Mapping 2006

    NARCIS (Netherlands)

    Piersma, Theunis; Pearson, Grant B.; Hickey, Robert; Dittmann, Sabine; Rogers, Danny I.; Folmer, Eelke; Honkoop, Pieter; Drent, Jan; Goeij, Petra de; Marsh, Loisette

    2006-01-01

    1. This is a report on a survey of the benthic ecology of the intertidal flats along the northern shores of Roebuck Bay in June 2006. In the period 11-20 June we mapped both the invertebrate macrobenthic animals (those retained by a 1 mm sieve) over the whole of the northern intertidal area of

  6. Bathymetry (2011) for Fish Bay, St. John

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This image represents a LiDAR (Light Detection & Ranging) 0.3x0.3 meter resolution depth surface for Fish Bay, St. John in the U.S. Virgin Islands (USVI). The...

  7. Hypoxia and acidification have additive and synergistic negative effects on the growth, survival, and metamorphosis of early life stage bivalves.

    Directory of Open Access Journals (Sweden)

    Christopher J Gobler

    Full Text Available Low oxygen zones in coastal and open ocean ecosystems have expanded in recent decades, a trend that will accelerate with climatic warming. There is growing recognition that low oxygen regions of the ocean are also acidified, a condition that will intensify with rising levels of atmospheric CO2. Presently, however, the concurrent effects of low oxygen and acidification on marine organisms are largely unknown, as most prior studies of marine hypoxia have not considered pH levels. We experimentally assessed the consequences of hypoxic and acidified water for early life stage bivalves (bay scallops, Argopecten irradians, and hard clams, Mercenaria mercenaria, marine organisms of significant economic and ecological value and sensitive to climate change. In larval scallops, experimental and naturally-occurring acidification (pH, total scale  = 7.4-7.6 reduced survivorship (by >50%, low oxygen (30-50 µM inhibited growth and metamorphosis (by >50%, and the two stressors combined produced additively negative outcomes. In early life stage clams, however, hypoxic waters led to 30% higher mortality, while acidified waters significantly reduced growth (by 60%. Later stage clams were resistant to hypoxia or acidification separately but experienced significantly (40% reduced growth rates when exposed to both conditions simultaneously. Collectively, these findings demonstrate that the consequences of low oxygen and acidification for early life stage bivalves, and likely other marine organisms, are more severe than would be predicted by either individual stressor and thus must be considered together when assessing how ocean animals respond to these conditions both today and under future climate change scenarios.

  8. Responses of upland herpetofauna to the restoration of Carolina Bays and thinning of forested Bay Margins.

    Energy Technology Data Exchange (ETDEWEB)

    Ledvina, Joseph A.

    2008-05-01

    Research on the effects of wetland restoration on reptiles and amphibians is becoming more common, but almost all of these studies have observed the colonization of recently disturbed habitats that were completely dry at the time of restoration. In a similar manner, investigations herpetofaunal responses to forest management have focused on clearcuts, and less intensive stand manipulations are not as well studied. To evaluate community and population responses of reptiles and amphibians to hydrology restoration and canopy removal in the interior of previously degraded Carolina bays, I monitored herpetofauna in the uplands adjacent to six historically degraded Carolina bays at the Savannah River Site (SRS) in South Carolina for four years after restoration. To evaluate the effects of forest thinning on upland herpetofauna, forests were thinned in the margins of three of these bays. I used repeated measures ANOVA to compare species richness and diversity and the abundance of selected species and guilds between these bays and with those at three reference bays that were not historically drained and three control bays that remained degraded. I also used Non-metric Multidimensional Scaling (NMDS) to look for community-level patterns based treatments.

  9. Join Bayes Nets: A new type of Bayes net for relational data

    CERN Document Server

    Schulte, Oliver; Moser, Flavia; Ester, Martin

    2008-01-01

    Many databases store data in relational format, with different types of entities and information about links between the entities. The field of statistical-relational learning has developed a number of new statistical models for such data. Instead of introducing a new model class, we propose using a standard model class--Bayes nets--in a new way: Join Bayes nets contain nodes that correspond to the descriptive attributes of the database tables, plus Boolean relationship nodes that indicate the presence of a link. Join Bayes nets are class-level models whose random variables describe attributes of generic individuals (e.g., $\\age(\\P)$ rather than $\\age(\\jack)$ where $\\P$ stands for a randomly selected person). As Join Bayes nets are just a special type of Bayes net, their semantics is standard (edges denote direct associations, d-separation implies probabilistic independence etc.), and Bayes net inference algorithms can be used "as is" to answer probabilistic queries involving relations. We present a dynamic p...

  10. Microbial biogeography of San Francisco Bay sediments

    Science.gov (United States)

    Lee, J. A.; Francis, C. A.

    2014-12-01

    The largest estuary on the west coast of North America, San Francisco Bay is an ecosystem of enormous biodiversity, and also enormous human impact. The benthos has experienced dredging, occupation by invasive species, and over a century of sediment input as a result of hydraulic mining. Although the Bay's great cultural and ecological importance has inspired numerous surveys of the benthic macrofauna, to date there has been almost no investigation of the microbial communities on the Bay floor. An understanding of those microbial communities would contribute significantly to our understanding of both the biogeochemical processes (which are driven by the microbiota) and the physical processes (which contribute to microbial distributions) in the Bay. Here, we present the first broad survey of bacterial and archaeal taxa in the sediments of the San Francisco Bay. We conducted 16S rRNA community sequencing of bacteria and archaea in sediment samples taken bimonthly for one year, from five sites spanning the salinity gradient between Suisun and Central Bay, in order to capture the effect of both spatial and temporal environmental variation on microbial diversity. From the same samples we also conducted deep sequencing of a nitrogen-cycling functional gene, nirS, allowing an assessment of evolutionary diversity at a much finer taxonomic scale within an important and widespread functional group of bacteria. We paired these sequencing projects with extensive geochemical metadata as well as information about macrofaunal distribution. Our data reveal a diversity of distinct biogeographical patterns among different taxa: clades ubiquitous across sites; clades that respond to measurable environmental drivers; and clades that show geographical site-specificity. These community datasets allow us to test the hypothesis that salinity is a major driver of both overall microbial community structure and community structure of the denitrifying bacteria specifically; and to assess

  11. 栉孔扇贝消化盲囊细菌群落组成的季节变化分析%Seasonal changes of bacterial community composition in digestive diverticula of scallops Chlamys farreri

    Institute of Scientific and Technical Information of China (English)

    杨彩霞; 李赟; 张婧宇; 王崇明

    2012-01-01

    为分析栉孔扇贝消化盲囊内细菌群落组成及其季节变化,于2009年6月—2010年6月(2月份除外)定期从青岛沙子口流清河湾扇贝养殖海区采集养殖的2龄栉孔扇贝,采用SDS方法提取消化盲囊的总DNA,并通过引物358f和907r采用PCR扩增细菌16S rDNA的V3~V5区序列,利用变性梯度凝胶电泳(denaturing gradient gel electrophoresis,DGGE)分离所得扩增序列.DGGE图谱显示,12个月份的样品共有不同位置的谱带11条,其中9条谱带作为共有谱带在所有月份的栉孔扇贝消化盲囊中均有分布,占总谱带数的81.82%,表明整个养殖季节栉孔扇贝消化盲囊内的细菌群落组成相对稳定.对11条DGGE条带进行切胶回收、PCR扩增、纯化、克隆后测序,其中9条谱带克隆测序成功.经BLAST比对搜索,结果显示9条序列与NCBI数据库中的序列相似性达97%~99%,所代表的细菌分别属于4大类群,变形菌门( Proteobacteria)、厚壁菌门(Firmicutes)、蓝细菌门(Cyanobacteria)和放线菌门(Actinobacteria);NCBI数据库中与其相近的细菌主要为马赛菌属(Massilia)、芽孢杆菌属(Bacillus)、微小杆菌属(Exiguobacterium)、聚球藻属(Synechococcus)、红球菌属(Rhodococcus)和未培养菌.%The seasonal changes of bacteria community composition in digestive diverticula of 2 age scallops Chlamys farreri were studied. The scallop samples were collected every month since June 2009 to June 2010 (except Feb. ) from Shazikou Liuqinghe sea area of Qingdao, which was the scallop culture area. The genomic DNA was extracted from digestive diverticula of scallop using SDS schizolysis method. Bacterial V3-V5 region of 16S rDNA was amplified with the 358f and 907r primers. Then, denaturing gradient gel electrophoresis(DGGE) was used to analyze and discriminate the amplified fragments. The DGGE fingerprint was analyzed by software Quantity One. The results showed that DGGE profiles exhibited 11 distinguishable bands

  12. Biological baseline data Youngs Bay, Oregon, 1974

    Energy Technology Data Exchange (ETDEWEB)

    McMechan, K.J. (ed.); Higley, D.L.; Holton, R.L.

    1975-04-01

    This report presents biological baseline information gathered during the research project, Physical, Chemical and Biological Studies on Youngs Bay.'' Youngs Bay is a shallow embayment located on the south shore of the Columbia River, near Astoria, Oregon. Research on Youngs Bay was motivated by the proposed construction by Alumax Pacific Aluminum Corporation of an aluminum reduction plant at Warrenton, Oregon. The research was designed to provide biological baseline information on Youngs Bay in anticipation of potential harmful effects from plant effluents. The information collected concerns the kinds of animals found in the Youngs Bay area, and their distribution and seasonal patterns of abundance. In addition, information was collected on the feeding habits of selected fish species, and on the life history and behavioral characteristics of the most abundant benthic amphipod, Corophium salmonis. Sampling was conducted at approximately three-week intervals, using commonly accepted methods of animal collection. Relatively few stations were sampled for fish, because of the need to standardize conditions of capture. Data on fish capture are reported in terms of catch-per-unit effort by a particular sampling gear at a specific station. Methods used in sampling invertebrates were generally more quantitative, and allowed sampling at a greater variety of places, as well as a valid basis for the computation of densities. Checklists of invertebrate species and fish species were developed from these samples, and are referred to throughout the report. The invertebrate checklist is more specific taxonomically than are tables reporting invertebrate densities. This is because the methods employed in identification were more precise than those used in counts. 9 refs., 27 figs., 25 tabs.

  13. Biogenic silicate accumulation in sediments, Jiaozhou Bay

    Institute of Scientific and Technical Information of China (English)

    LI Xuegang; SONG Jinming; DAI Jicui; YUAN Huamao; LI Ning; LI Fengye; SUN Song

    2006-01-01

    It has been widely recognized that low silicate content in seawater is a major limiting factor to phytoplankton primary production in Jiaozhou Bay. However the reason of Si-limitation remains poorly understood. In the present study we measured the biogenic silicate content and discussed the accumulation of silicate in Jiaozhou Bay sediment. The results show that the biogenic silica content in the sediment of the Jiaozhou Bay is obviously much higher than those in the Yellow Sea and the Bohai Sea. The BSi:TN ratios and BSi:16P ratios in the sediment are > 1 and the OC:BSi ratio in sediment is lower than these of Redfield ratio (106:16), indicating that the decomposition rate of OC is much higher than that for BSi in similar conditions. Therefore, the majority of the biogenic silicate was buried and thus did not participate in silicate recycling. Silicate accumulation in sediment may explain why Si limits the phytoplankton growth in the Jiaozhou Bay. Comparing the flux of biogenic silicate from sediments with primary production rate, it can be concluded that only 15.5% of biogenic silicate is hydrolyzed during the journey from surface to bottom in seawater, thus approximate 84.5% of biogenic silicate could reach the bottom. The silicate releasing rate from the sediment to seawater is considerably lower than that of sedimentation of biogenic silicate, indicating silicate accumulation in sediment too. In a word, the silicate accumulation in sediment is the key reason of silicate limiting to phytoplankton growth in Jiaozhou Bay.

  14. Comparative susceptibility of veliger larvae of four bivalve mollusks to a Vibrio alginolyticus strain.

    Science.gov (United States)

    Luna-González, A; Maeda-Martínez, A N; Sainz, J C; Ascencio-Valle, F

    2002-06-03

    The susceptibility of 7 d old veliger larvae of the scallops Argopecten ventricosus and Nodipecten subnodosus, the penshell Atrina maura, and the Pacific oyster Crassostrea gigas to a pathogenic strain of Vibrio alginolyticus was investigated by challenging the larvae with different bacterial concentrations in a semi-static assay. The results indicate that the larvae of the 2 scallop species are more susceptible to the V. alginolyticus strain than those of the oyster and the penshell. Signs of the disease were similar to bacillary necrosis described in previous work. Interspecies differences in susceptibility to pathogens are discussed.

  15. Inheritance of mitochondrial DNA in Japanese scallop,Patinopecten yessoensis%虾夷扇贝线粒体遗传模式的初步研究

    Institute of Scientific and Technical Information of China (English)

    徐科凤; 李琪; 王国栋

    2011-01-01

    For animals, the inheritance of mitoehondrial DNA (mtDNA) is predominantly maternal. Recently, doubly uniparental inheritance (DUI) of mtDNA in some bivalves (the families Mytilidae, Unionidae and Veneridae) has been discovered. The discovery of DUI of mtDNA has challenged the traditional maternal inheritance and established a unique system to test for evolutionary forces acting on mitoehondrial genomes. However, whether DUI of mtDNA is widely distributed among bivalves is uncertain. In this paper, the mitochondrial inheritance model of Japanese scallop Patinopecten yessoensis was investigated. The results suggest that there is no difference in the mtDNA between somatic and gametic tissues in the same individual. The family test shows that mitochondrial haplotypes of offspring ( D-shaped larvae) are the same as those of mothers. No evidence for DUI of mtDNA in P. yessoensis is found.%动物线粒体遗传模式主要为母系遗传.近年来在一些双壳类(如贻贝科、蚌科和帘蛤科)中发现了线粒体双重单亲遗传现象.双重单亲遗传完全不同于传统的母系遗传模式,它开启了一种独特的系统来检测进化力在线粒体基因组中的作用.但双重单亲遗传是否广泛存在于双壳类尚属未知.文章研究了虾夷扇贝(Patinopecten yessoensis)的线粒体遗传模式,结果显示,同一个体中体细胞和性腺的线粒体片段的基因型不存在差异;家系检测中也显示子代的线粒体单倍型与母本一致;在虾夷扇贝线粒体中未发现双重单亲遗传现象.

  16. Effect of β-cyclodextrin and maltodextrin on flavor compounds and amino acid content of scallop powder%β-环糊精与麦芽糊精对扇贝粉风味物质及氨基酸含量的影响

    Institute of Scientific and Technical Information of China (English)

    杨秀敏; 王颉; 牟建楼; 李书红

    2011-01-01

    In order to produce quality scallop powder, the effect of fj-cyclodextrin and maltodextrin on flavor compounds and amino acids of scallop powder were studied. The flavor compounds in scallop powder (treatment 1) and scallop powder added P-cyclodextrin and maltodextrin (the ratio 1:8) (treatment 2)were analyzed by gas chromatography-mass spectrometry (GC-MS) combined with headspace solid phase micro extraction (HS-SPME). The contents of amino acids of scallop powder were detected by high performance liquid chromatography (HPLC). The results showed that 71 flavor compounds were detected from scallop powder and 88 flavor compounds were detected from scallop powder added p-cyclodextrin and maltodextrin. Contents of amino acids were 208.78mg/g in scallop powder and 140.26mg/g in scallop powder added P-cyclodextrin and maltodextrin, respectively. The flavor compounds were significantly increased, while the content of amino acid was decreased, when p-cyclodextrin and maltodextrin were added. Maltodextrin contributed to increase the yield of scallop powder.%为开发优质扇贝粉,研究了β-环糊精与麦芽糊精对扇贝粉风味物质及氨基酸(amino acid,AA)含量的影响.采用顶空固相微萃取(HS-SPME)与气相色谱-质谱联用(GC-MS)技术,鉴定了不加β-环糊精与麦芽糊精(处理1)和添加β-环糊精与麦芽糊精(比例为1:8)(处理2)的2种扇贝粉风味物质,采用高效液相色谱(HPLC)法测定了2种扇贝粉从含量.处理1和处理2的扇贝粉分别含有71种和88种风味物质,分别含有208.78mg/g和140.26mg/g的氨基酸.添加β-环糊精与麦芽糊精的扇贝粉风味成分含量和种类显著多于未添加β-环糊精与麦芽糊精的,而添加了β-环糊精与麦芽糊精的扇贝粉AA含量低于未添加β-环糊精与麦芽糊精的扇贝粉AA含量,而麦芽糊精的添加有助于提高集粉率.

  17. Topobathymetric model of Mobile Bay, Alabama

    Science.gov (United States)

    Danielson, Jeffrey J.; Brock, John C.; Howard, Daniel M.; Gesch, Dean B.; Bonisteel-Cormier, Jamie M.; Travers, Laurinda J.

    2013-01-01

    Topobathymetric Digital Elevation Models (DEMs) are a merged rendering of both topography (land elevation) and bathymetry (water depth) that provides a seamless elevation product useful for inundation mapping, as well as for other earth science applications, such as the development of sediment-transport, sea-level rise, and storm-surge models. This 1/9-arc-second (approximately 3 meters) resolution model of Mobile Bay, Alabama was developed using multiple topographic and bathymetric datasets, collected on different dates. The topographic data were obtained primarily from the U.S. Geological Survey (USGS) National Elevation Dataset (NED) (http://ned.usgs.gov/) at 1/9-arc-second resolution; USGS Experimental Advanced Airborne Research Lidar (EAARL) data (2 meters) (http://pubs.usgs.gov/ds/400/); and topographic lidar data (2 meters) and Compact Hydrographic Airborne Rapid Total Survey (CHARTS) lidar data (2 meters) from the U.S. Army Corps of Engineers (USACE) (http://www.csc.noaa.gov/digitalcoast/data/coastallidar/). Bathymetry was derived from digital soundings obtained from the National Oceanic and Atmospheric Administration’s (NOAA) National Geophysical Data Center (NGDC) (http://www.ngdc.noaa.gov/mgg/geodas/geodas.html) and from water-penetrating lidar sources, such as EAARL and CHARTS. Mobile Bay is ecologically important as it is the fourth largest estuary in the United States. The Mobile and Tensaw Rivers drain into the bay at the northern end with the bay emptying into the Gulf of Mexico at the southern end. Dauphin Island (a barrier island) and the Fort Morgan Peninsula form the mouth of Mobile Bay. Mobile Bay is 31 miles (50 kilometers) long by a maximum width of 24 miles (39 kilometers) with a total area of 413 square miles (1,070 square kilometers). The vertical datum of the Mobile Bay topobathymetric model is the North American Vertical Datum of 1988 (NAVD 88). All the topographic datasets were originally referenced to NAVD 88 and no transformations

  18. Corpus Christi, Nueces, and Aransas Bays

    Science.gov (United States)

    Handley, Lawrence R.; Spear, Kathryn A.; Eleonor Taylor,; Thatcher, Cindy

    2015-01-01

    Corpus Christi Bay and Nueces Bay comprise the middle estuarine portion of Texas’ Coastal Bend region (Figure 1; Burgan and Engle, 2006). Aransas Bay is part of the upper estuarine portion of the region. These bays make up part of the Coastal Bend Bays and Estuaries Program, one of the many estuarine areas in the U.S. Environmental Protection Agency’s National Estuary Program (Holt, 1998). The Coastal Bend region is sub-humid and sub-tropical. Summers are long, hot, and humid, and winters are short and mild. The landscape around the estuaries is dominated by row crops, pastures, and brushy rangeland (Handley and others, 2007). The Nueces River, along with other smaller rivers and creeks, provides freshwater inflow—along with essential nutrients and sediment— into Nueces Bay, which feeds into Corpus Christi Bay (Holt, 1998). Freshwater inflow into the Aransas Bay comes from Mission River, Aransas River, and Copano Creek. The region is relatively dry otherwise and prone to droughts. Corpus Christi receives an average of 76.2 cm (30 in) of rain annually; evaporation usually exceeds 177.8 cm (70 in) (Holt, 1998; Handley and others, 2007). The San Antonio-Nueces Coastal Basin drains into Aransas Bay. The Nueces River basin covers 43,253 km2 (16,700 miles2 ), from northwest of San Antonio, flowing southeast to where it drains into Nueces and Corpus Christi Bays (Holt, 1998). The Nueces-Rio Grande basin covers approximately 18,648 1 U.S. Geological Survey National Wetlands Research Center, 700 Cajundome Blvd., Lafayette, LA 70506 2 Harte Research Institute for Gulf of Mexico Studies, Texas A&M University - Corpus Christi, 6300 Ocean Drive, Unit 5869, Corpus Christi, Texas 78412 2 km2 (7,200 miles2 ) and flows partially into Corpus Christi Bay (as well as the upper Laguna Madre). The inflow from Nueces River has declined by approximately 20 percent over the past several decades, partly due to construction of lakes and reservoirs, particularly Lake Corpus Christi

  19. Intestinal Flora in Supply Chain of Live Released Yesso Scallop Pationopecten yessoensis%底播虾夷扇贝活品供应链各环节中肠道菌群分析

    Institute of Scientific and Technical Information of China (English)

    刘世永; 刘俊荣; 马永生; 沈建; 杨婷婷; 苗治欧

    2014-01-01

    以鲜活底播虾夷扇贝为研究对象,研究扇贝肠道菌群结构与其生长环境的相似性,并跟踪研究组成供应链的采捕、活水运输、中转、净化Ⅰ、净化Ⅱ及市场等6个环节的活品扇贝的肠道菌群结构变化规律。首先,在扇贝捕捞船现场采集扇贝、海水以及海底沉积物,随后继续对活水运输、中转、净化Ⅰ、净化II及市场等环节跟踪采集扇贝肠道样品;利用基于16S rDNA的PCR-变性梯度凝胶电泳指纹图谱技术对扇贝肠道菌群、沉积物及海水进行分析。变性梯度凝胶电泳指纹图谱分析结明,从即捕扇贝肠道、沉积物及海水中分别获得12、18及20个扩增条带,其中,三者具有9条相同的条带;其余包括活水运输、中转、净化Ⅰ、净化Ⅱ及市场等5个环节的条带数依次为14、16、13、9、22。相似性分析表明,即捕扇贝肠道与海水及沉积物之间菌群组成相似性系数(戴斯系数)分别为66.6%和62.5%;由采捕到市场6环节之间虾夷扇贝肠道菌群相似性系数依次为64.0%、73.3%、69.0%、63.6%及32.3%。采捕后至净化池以及净化后至市场均发生菌群条带的增加,表明采捕后流通环境的改变对扇贝肠道菌群结构有影响;净化处理具有有效的减菌效果;现有捕后处置方式即从采捕至净化Ⅱ,活品扇贝处于比较稳定的胁迫状态,而净化后的产品至消费市场环节的胁迫压力明显,即该零售终端环节对活品质量有重要影响。%The similarity of intestinal flora with growing environment and changes in flora structure were studied in yesso scallop Pationopecten yessoensis in live supply chain ,including 6 key links from post cap-ture on board ,live transport ,tranship ,depuration Ⅰ ,depuration Ⅱ and marketing .The scallop ,seawa-ter and sediments on deck of scallop-dredging vessels were collected ,and the scallop was also

  20. Spatial variations of mercury in sediment of Minamata Bay, Japan.

    Science.gov (United States)

    Tomiyasu, Takashi; Matsuyama, Akito; Eguchi, Tomomi; Fuchigami, Yoko; Oki, Kimihiko; Horvat, Milena; Rajar, Rudi; Akagi, Hirokatsu

    2006-09-01

    Mercury-contaminated effluent was discharged into Minamata Bay from a chemical plant over a period of approximately 40 years until 1968. In October 1977, the Minamata Bay Pollution Prevention Project was initiated to dispose of sedimentary sludge containing mercury concentrations higher than 25 mg kg(-1). In March 1990, the project was completed. In an effort to estimate current contamination in the bay, the vertical and horizontal distributions of mercury in sediment were investigated. Sediment core samples were collected on June 26, 2002 at 16 locations in Minamata Bay and Fukuro Bay located in the southern part of Minamata Bay. The sediment in Fukuro Bay had not been dredged. The total mercury concentration in surface sediment was 1.4-4.3 mg kg(-1) (2.9+/-0.9 mg kg(-1), n=9) for the dredged area of Minamata Bay and 0.3-4.8 mg kg(-1) (3.6+/-1.6 mg kg(-1), n=4) for Fukuro Bay. In the lower layers of long cores taken from both areas, the total mercury concentration decreased with depth and finally showed relatively uniform low values. These values can be considered to represent the background concentration absent of anthropogenic influence, which was estimated for the study area to be 0.068+/-0.012 mg kg(-1) (n=10). From the surface, the total mercury concentration in Fukuro Bay increased with depth and reached a maximum at 8-14 cm. In Minamata Bay, several centimeters from the surface the total mercury concentration did not change significantly having considerably higher values than the background level. At six stations, the methylmercury concentration was determined. Although the vertical variations were similar to those for total mercury, Fukuro Bay sediment showed a higher concentration of methylmercury than Minamata Bay sediment.

  1. The Bay of Pigs: Revisiting Two Museums

    Directory of Open Access Journals (Sweden)

    Peter Read

    2007-08-01

    Full Text Available The Museum of Playa Giron (the Bay of Pigs in the region of Cienega De Zapata, Cuba, celebrates the repulse of Brigade 2506 as the first reverse of US imperialism on the American continents. The equivalent Brigade 2506 Museum in Miami, dedicated to and maintained by the members of Brigade 2506, celebrates defeat at the Bay of Pigs as moral victory for the Cuban exiles. The forces were indeed implacable foes. Yet between the museums can be detected some curious similarities. Both present the common theme of the confrontation between forces of good and evil. Both celebrate the philosophy that dying for one’s country is the greatest good a citizen may achieve. Both museums fly the common Cuban flag. Both museums identify a common enemy: the United States of America. This article, by comparing the displays in the two museums, analyses some cultural elements of what, despite decades of separation, in some ways remains a common Cuban culture.

  2. Urban Noise Modelling in Boka Kotorska Bay

    Directory of Open Access Journals (Sweden)

    Aleksandar Nikolić

    2014-04-01

    Full Text Available Traffic is the most significant noise source in urban areas. The village of Kamenari in Boka Kotorska Bay is a site where, in a relatively small area, road traffic and sea (ferry traffic take place at the same time. Due to the specificity of the location, i.e. very rare synergy of sound effects of road and sea traffic in the urban area, as well as the expressed need for assessment of noise level in a simple and quick way, a research was conducted, using empirical methods and statistical analysis methods, which led to the creation of acoustic model for the assessment of equivalent noise level (Leq. The developed model for noise assessment in the Village of Kamenari in Boka Kotorska Bay quite realistically provides data on possible noise levels at the observed site, with very little deviations in relation to empirically obtained values.

  3. Daya Bay Antineutrino Detector Gas System

    CERN Document Server

    Band, H R; Chu, M-C; Heeger, K M; Kwok, M W; Shih, K; Wise, T; Xiao, Q

    2012-01-01

    The Daya Bay Antineutrino Detector gas system is designed to protect the liquid scintillator targets of the antineutrino detectors against degradation and contamination from exposure to ambient laboratory air. The gas system is also used to monitor the leak tightness of the antineutrino detector assembly. The cover gas system constantly flushes the gas volumes above the liquid scintillator with dry nitrogen to minimize oxidation of the scintillator over the five year lifetime of the experiment. This constant flush also prevents the infiltration of radon or other contaminants into these detecting liquids keeping the internal backgrounds low. Since the Daya Bay antineutrino detectors are immersed in the large water pools of the muon veto system, other gas volumes are needed to protect vital detector cables or gas lines. These volumes are also purged with dry gas. Return gas is monitored for oxygen content and humidity to provide early warning of potentially damaging leaks. The design and performance of the Daya...

  4. Thatcher Bay, Washington, Nearshore Restoration Assessment

    Science.gov (United States)

    Breems, Joel; Wyllie-Echeverria, Sandy; Grossman, Eric E.; Elliott, Joel

    2009-01-01

    The San Juan Archipelago, located at the confluence of the Puget Sound, the Straits of Juan de Fuca in Washington State, and the Straits of Georgia, British Columbia, Canada, provides essential nearshore habitat for diverse salmonid, forage fish, and bird populations. With 408 miles of coastline, the San Juan Islands provide a significant portion of the available nearshore habitat for the greater Puget Sound and are an essential part of the regional efforts to restore Puget Sound (Puget Sound Shared Strategy 2005). The nearshore areas of the San Juan Islands provide a critical link between the terrestrial and marine environments. For this reason the focus on restoration and conservation of nearshore habitat in the San Juan Islands is of paramount importance. Wood-waste was a common by-product of historical lumber-milling operations. To date, relatively little attention has been given to the impact of historical lumber-milling operations in the San Juan Archipelago. Thatcher Bay, on Blakely Island, located near the east edge of the archipelago, is presented here as a case study on the restoration potential for a wood-waste contaminated nearshore area. Case study components include (1) a brief discussion of the history of milling operations. (2) an estimate of the location and amount of the current distribution of wood-waste at the site, (3) a preliminary examination of the impacts of wood-waste on benthic flora and fauna at the site, and (4) the presentation of several restoration alternatives for the site. The history of milling activity in Thatcher Bay began in 1879 with the construction of a mill in the southeastern part of the bay. Milling activity continued for more than 60 years, until the mill closed in 1942. Currently, the primary evidence of the historical milling operations is the presence of approximately 5,000 yd3 of wood-waste contaminated sediments. The distribution and thickness of residual wood-waste at the site was determined by using sediment

  5. The Holocene History of Placentia Bay, Newfoundland

    DEFF Research Database (Denmark)

    Sheldon, Christina; Seidenkrantz, Marit-Solveig; Reynisson, Njall

    2013-01-01

    Marine sediments analyzed from cores taken in Placentia Bay, Newfoundland, located in the Labrador Sea, captured oceanographic and climatic changes from the end of the Younger Dryas through the Holocene. Placentia Bay is an ideal site to capture changes in both the south-flowing Labrador Current...... have been analyzed using several climate proxies, including benthic foraminifera, diatoms, IP25, dinoflagellate cysts and XRF. Together, these cores provide high-resolution records of the changes in climatic conditions over the last ca. 13,000 years in the southern Labrador Sea. After the Younger Dryas...... ended, the beginning of the warmer early Holocene was recorded by an increase in productivity-linked foraminiferal and diatom assemblages, as well as a drop in the presence of the sea-ice indicator IP25 in core 14G (Pearce et al., 2012). Variability in atmospheric circulation during the Holocene...

  6. New and Improved Results from Daya Bay

    CERN Document Server

    CERN. Geneva

    2017-01-01

    Despite the great progress achieved in the last decades, neutrinos remain among the least understood fundamental particles to have been experimentally observed. The Daya Bay Reactor Neutrino Experiment consists of eight identically designed detectors placed underground at different baselines from three groups of nuclear reactors in China, a configuration that is ideally suited for studying the properties of these elusive particles. In this talk I will review the improved results released last summer by the Daya Bay collaboration. These results include (i) a precision measurement of the θ13 mixing angle and the effective mass splitting in the electron antineutrino disappearance channel with a dataset comprising more than 2.5 million antineutrino interactions, (ii) a high-statistics measurement of the absolute flux and spectrum of reactor-produced electron antineutrinos, and (iii) a search for light sterile neutrino mixing performed with more than three times the statistics of the previous result. I w...

  7. Tides of Massachusetts and Cape Cod Bays

    Science.gov (United States)

    1992-09-01

    Massachusetts Bays records. (1) The classic method of harmonic analysis was dcevised by Lord Kelvin in 1867, expanded by the work of Sir George Darwin , A...method which has been further ievised itý the program used here (Irish and Brown, 1986). (2) The response method ’Aas devised hk Munk and Cartwright ... Cartwright et al., 1969). Therefore. the analysis selects the amount of S2 which is consistent with a smooth admittance of all constituents in the band

  8. Operation of the Bayes Inference Engine

    Energy Technology Data Exchange (ETDEWEB)

    Hanson, K.M.; Cunningham, G.S.

    1998-07-27

    The authors have developed a computer application, called the Bayes Inference Engine, to enable one to make inferences about models of a physical object from radiographs taken of it. In the BIE calculational models are represented by a data-flow diagram that can be manipulated by the analyst in a graphical-programming environment. The authors demonstrate the operation of the BIE in terms of examples of two-dimensional tomographic reconstruction including uncertainty estimation.

  9. Monterey Bay Aquarium Volunteer Guide Scheduling Analysis

    Science.gov (United States)

    2014-12-01

    wetlands/aviary 1 24 splash zone—rocky shore, coral reef kingdom 8 play your part 25 sandy seafloor 9 wetlands/aviary 2 26 octopus/deep reef 10...The mission of the Monterey Bay Aquarium is to inspire conservation of the oceans. It does this through education outreach, exhibits, research and... conservation , and by rehabilitating injured ocean wildlife. The Aquarium has a large and diverse staff that includes aquarists, scientific divers

  10. A Compelling Solution to Guantanamo Bay

    Science.gov (United States)

    2013-03-01

    was captured during the invasion of Afghanistan in the fall of 2001 and sent to the Guantanamo Bay Detention Center in 2002.54 In 2004, the United...He is widely known as Osama Bin Laden’s “press secretary” because he produced propaganda videos for Al Qaeda before his capture.103 In November...Congress has established Legislative Courts in Guam, Puerto Rico, the Northern Mariana Islands, the Virgin Islands, and in the Panama Canal Zone.176 One

  11. Operational modal identification using variational Bayes

    Science.gov (United States)

    Li, Binbin; Der Kiureghian, Armen

    2017-05-01

    Operational modal analysis is the primary tool for modal parameter identification in civil engineering. Bayesian statistics offers an ideal framework for analyzing uncertainties associated with the identified modal parameters. However, the exact Bayesian formulation is usually intractable due to the high computational demand in obtaining the posterior distributions of modal parameters. In this paper, the variational Bayes method is employed to provide an approximate solution. Unlike the Laplace approximation and Monte Carlo sampling, the variational Bayes approach provides a gradient-free algorithm to analytically approximate the posterior distributions. Working with the state-space representation of a dynamical system, the variational Bayes approach for identification of modal parameters is derived by ignoring statistical correlation between latent variables and the model parameters. In this approach, the joint distribution of the state-transition and observation matrices as well as the joint distribution of the process noise and measurement error are firstly calculated analytically using conjugate priors. The distribution of modal parameters is extracted from these obtained joint distributions using a first-order Taylor series expansion. A robust implementation of the method is discussed by using square-root filtering and Cholesky decomposition. The proposed approach is illustrated by its application to an example mass-spring system and the One Rincon Hill Tower in San Francisco.

  12. An overview of San Francisco Bay PORTS

    Science.gov (United States)

    Cheng, Ralph T.; McKinnie, David; English, Chad; Smith, Richard E.

    1998-01-01

    The Physical Oceanographic Real-Time System (PORTS) provides observations of tides, tidal currents, and meteorological conditions in real-time. The San Francisco Bay PORTS (SFPORTS) is a decision support system to facilitate safe and efficient maritime commerce. In addition to real-time observations, SFPORTS includes a nowcast numerical model forming a San Francisco Bay marine nowcast system. SFPORTS data and nowcast numerical model results are made available to users through the World Wide Web (WWW). A brief overview of SFPORTS is presented, from the data flow originated at instrument sensors to final results delivered to end users on the WWW. A user-friendly interface for SFPORTS has been designed and implemented. Appropriate field data analysis, nowcast procedures, design and generation of graphics for WWW display of field data and nowcast results are presented and discussed. Furthermore, SFPORTS is designed to support hazardous materials spill prevention and response, and to serve as resources to scientists studying the health of San Francisco Bay ecosystem. The success (or failure) of the SFPORTS to serve the intended user community is determined by the effectiveness of the user interface.

  13. The Baltimore Engineers and the Chesapeake Bay, 1961-1987

    Science.gov (United States)

    1988-01-01

    Bay’s ecosystem was still quite sparse, the study provided an overview of the natural and man-made forces operating in the Bay and its watershed and...Susquehanna and Potomac nozzles gushed forth in a large seemingly steady stream while other very small ones dribbled out a stream that was hardly...Engineer District, 1984), p. 11, Table II-I. 5. An excellent brief overview to the Bay’s ecosystem is the U.S. Environmental Protection Agency

  14. Humboldt Bay Initiative: Adaptive Management in a Changing World

    OpenAIRE

    Schlosser, Susan

    2009-01-01

    The Humboldt Bay Initiative seeks to bring people together to help envision the desired future state of the Humboldt Bay ecosystems, to help understand past, current and future conditions, and to move forward in the spirit of collaboration towards a sustainable and dynamic future. In order to address priority stresses to the ecosystems due to human activities, climate change, excessive sediment, and invasive species, the Humboldt Bay Initiative proposes a set of strategies that help create th...

  15. Organic Matter Remineralization Predominates Phosphorus Cycling in the Mid-Bay Sediments in the Chesapeake Bay

    Energy Technology Data Exchange (ETDEWEB)

    Sunendra, Joshi R.; Kukkadapu, Ravi K.; Burdige, David J.; Bowden, Mark E.; Sparks, Donald L.; Jaisi, Deb P.

    2015-05-19

    The Chesapeake Bay, the largest and most productive estuary in the US, suffers from varying degrees of water quality issues fueled by both point and non–point source nutrient sources. Restoration of the bay is complicated by the multitude of nutrient sources, their variable inputs and hydrological conditions, and complex interacting factors including climate forcing. These complexities not only restrict formulation of effective restoration plans but also open up debates on accountability issues with nutrient loading. A detailed understanding of sediment phosphorus (P) dynamics enables one to identify the exchange of dissolved constituents across the sediment- water interface and aid to better constrain mechanisms and processes controlling the coupling between the sediments and the overlying waters. Here we used phosphate oxygen isotope ratios (δ18Op) in concert with sediment chemistry, XRD, and Mössbauer spectroscopy on the sediment retrieved from an organic rich, sulfidic site in the meso-haline portion of the mid-bay to identify sources and pathway of sedimentary P cycling and to infer potential feedback effect on bottom water hypoxia and surface water eutrophication. Isotope data indicate that the regeneration of inorganic P from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the mid-bay sediments. We interpret that the excess inorganic P generated by remineralization should have overwhelmed any bottom-water and/or pore-water P derived from other sources or biogeochemical processes and exceeded saturation with respect to authigenic P precipitation. It is the first research that identifies the predominance of remineralization pathway against remobilization (coupled Fe-P cycling) pathway in the Chesapeake Bay. Therefore, these results are expected to have significant implications for the current understanding of P cycling and benthic-pelagic coupling in the bay, particularly on the

  16. Organic matter remineralization predominates phosphorus cycling in the mid-Bay sediments in the Chesapeake Bay.

    Science.gov (United States)

    Joshi, Sunendra R; Kukkadapu, Ravi K; Burdige, David J; Bowden, Mark E; Sparks, Donald L; Jaisi, Deb P

    2015-05-19

    Chesapeake Bay, the largest and most productive estuary in the U.S., suffers from varying degrees of water quality issues fueled by both point and nonpoint nutrient sources. Restoration of the Bay is complicated by the multitude of nutrient sources, their variable inputs, and complex interaction between imported and regenerated nutrients. These complexities not only restrict formulation of effective restoration plans but also open up debates on accountability issues with nutrient loading. A detailed understanding of sediment phosphorus (P) dynamics provides information useful in identifying the exchange of dissolved constituents across the sediment-water interface as well as helps to better constrain the mechanisms and processes controlling the coupling between sediments and the overlying waters. Here we used phosphate oxygen isotope ratios (δ(18)O(P)) in concert with sediment chemistry, X-ray diffraction, and Mössbauer spectroscopy on sediments retrieved from an organic rich, sulfidic site in the mesohaline portion of the mid-Bay to identify sources and pathway of sedimentary P cycling and to infer potential feedbacks on bottom water hypoxia and surface water eutrophication. Authigenic phosphate isotope data suggest that the regeneration of inorganic P from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the mid-Bay sediments. This indicates that the excess inorganic P generated by remineralization should have overwhelmed any pore water and/or bottom water because only a fraction of this precipitates as authigenic P. This is the first research that identifies the predominance of remineralization pathway and recycling of P within the Chesapeake Bay. Therefore, these results have significant implications on the current understanding of sediment P cycling and P exchange across the sediment-water interface in the Bay, particularly in terms of the sources and pathways of P that sustain hypoxia

  17. Index for Assessing Water Trophic Status in Semi-Enclosed Cuban Bays. Case Study: Cienfuegos Bay

    CERN Document Server

    Seisdedo, Mabel; Arencibia, Gustavo

    2013-01-01

    This paper aims at contributing to the coastal environmental management by developing a new trophic status index of the water (TSIW). The index is tailored to semi-enclosed bays with estuarine characteristic like the Cienfuegos bay in Cuba. We also propose pressure indicators related to exporting and assimilation capacities as a tool to assess the vulnerability of the system to eutrophication. The TSIW is based on response indicators to eutrophication processes showing correspondence with the predefined pressure indicators and previous reports on water quality. Thus, the proposed trophic status index is a reliable scientific tool to measure the current stage of the water quality and to establish a baseline for further studies.

  18. Earthquake and bay: Response of Monterey Bay to the Loma Prieta Earthquake

    Science.gov (United States)

    Schwing, Franklin B.; Norton, Jerrold G.; Pilskaln, Cynthia H.

    The magnitude-7.1 Loma Prieta earthquake, which ruptured a segment of the San Andreas fault on October 17, 1989, and caused extensive damage over a large area of central California, also produced substantial motions in nearby Monterey Bay (Figure 1). Earthquake effects included a tsunami, or seismic sea wave, and subsequent surface water oscillations that were detected for about 24 hours following the main shock and widespread, substantial slumping of sediments on the Monterey Bay continental shelf and along the walls of Monterey Submarine Canyon.

  19. Modeling nitrogen cycling in forested watersheds of Chesapeake Bay

    Energy Technology Data Exchange (ETDEWEB)

    Hunsaker, C.T.; Garten, C.T.; Mulholland, P.J.

    1995-03-01

    The Chesapeake Bay Agreement calls for a 40% reduction of controllable phosphorus and nitrogen to the tidal Bay by the year 2000. To accomplish this goal the Chesapeake Bay Program needs accurate estimates of nutrient loadings, including atmospheric deposition, from various land uses. The literature was reviewed on forest nitrogen pools and fluxes, and nitrogen data from research catchments in the Chesapeake Basin were identified. The structure of a nitrogen module for forests is recommended for the Chesapeake Bay Watershed Model along with the possible functional forms for fluxes.

  20. MODELING THE 1958 LITUYA BAY MEGA-TSUNAMI, II

    Directory of Open Access Journals (Sweden)

    Charles L. Mader

    2002-01-01

    Full Text Available Lituya Bay, Alaska is a T-Shaped bay, 7 miles long and up to 2 miles wide. The two arms at the head of the bay, Gilbert and Crillon Inlets, are part of a trench along the Fairweather Fault. On July 8, 1958, an 7.5 Magnitude earthquake occurred along the Fairweather fault with an epicenter near Lituya Bay.A mega-tsunami wave was generated that washed out trees to a maximum altitude of 520 meters at the entrance of Gilbert Inlet. Much of the rest of the shoreline of the Bay was denuded by the tsunami from 30 to 200 meters altitude.In the previous study it was determined that if the 520 meter high run-up was 50 to 100 meters thick, the observed inundation in the rest of Lituya Bay could be numerically reproduced. It was also concluded that further studies would require full Navier-Stokes modeling similar to those required for asteroid generated tsunami waves.During the Summer of 2000, Hermann Fritz conducted experiments that reproduced the Lituya Bay 1958 event. The laboratory experiments indicated that the 1958 Lituya Bay 524 meter run-up on the spur ridge of Gilbert Inlet could be caused by a landslide impact.The Lituya Bay impact landslide generated tsunami was modeled with the full Navier- Stokes AMR Eulerian compressible hydrodynamic code called SAGE with includes the effect of gravity.

  1. BayesWave Analysis for LIGO Detector Characterization

    Science.gov (United States)

    Key, Joey Shapiro; LIGO Scientific Collaboration; Virgo Collaboration

    2016-03-01

    The Advanced LIGO gravitational wave detectors successfully collected data during the first observing run (O1) September 2015 to January 2016. The Bayesian inference wavelet decomposition algorithm BayesWave uses a phenomenological parameterized model to characterize the data. Among the BayesWave products are reconstructed waveforms and spectral analysis of instrument noise transients (``glitches''). The BayesWave analysis contributes to our understanding of the LIGO instrument and our ability to distinguish instrument glitches from burst sources of gravitational waves. Preliminary BayesWave analysis of the LIGO O1 data will be presented.

  2. Geology of the Monterey Bay region, California

    Science.gov (United States)

    Greene, H. Gary

    1977-01-01

    Geophysical data and sea floor samples collected from the continental shelf and slope between Ano Nuevo Point and Point Sur, California indicate that the Monterey Bay region has had a complex late Cenozoic tectonic history. Uplift and depression have produced a succession of regressive and transgressive sedimentary units, while contemporaneous right-slip along faults of the San Andreas system have offset major structural and lithologic elements. This deformation produced three regional and several local unconformities within upper Tertiary rocks and initiated development of a canyon system that today includes the Monterey, Ascension, Carmel, and other large submarine canyons. The Tertiary stratigraphy of the offshore Monterey Bay area is divided into two provinces by a major structural boundary, the north-trending Palo Colorado-San Gregorio fault zone. East of this zone in the offshore are four seismically distinct sequences that can be correlated with major sequences onshore. These sequences comprise (1) pre-Tertiary basement, and (2) middle Miocene, (3) upper Miocene to Pliocene, and (4) upper Pliocene to Holocene sedimentary intervals. Each of the latter three sequences is bounded by unconformities, as is its counterpart on land. Only Neogene sedimentary rocks are present offshore; Paleogene units, if originally present, have been removed completely by pre-middle Miocene erosion. An extensive erosional surface was cut during Zemorrian time into the late Mesozoic granitic basement rocks. Incised into this surface are the ancestral Monterey Canyon and an unnamed canyon. Marine sedimentary rocks of upper Miocene and Pliocene age overlie this unconformably and fill the unnamed canyon. Similar rocks also may have once filled Monterey Canyon. Near shore these strata are covered by terrestrial alluvial and eolian deposits, deltaic deposits, marine canyon fill, landslide and slump deposits, and unconsolidated sediments that range in age from upper Pliocene to Holocene

  3. San Francisco Bay National Wildlife Refuge Complex Annual Narrative Report 1979

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The San Francisco Bay National Wildlife Refuge Complex comprises of three refuges including the San Francisco Bay National Wildlife Refuge, the San Pablo Bay...

  4. On Bayes linear unbiased estimation of estimable functions for the singular linear model

    Institute of Scientific and Technical Information of China (English)

    ZHANG Weiping; WEI Laisheng

    2005-01-01

    The unique Bayes linear unbiased estimator (Bayes LUE) of estimable functions is derived for the singular linear model. The superiority of Bayes LUE over ordinary best linear unbiased estimator is investigated under mean square error matrix (MSEM)criterion.

  5. Sediment depositional environment in some bays in Central west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Rajamanickam, G.V.; Gujar, A.R.

    minerals data show a positive correlation with mean grain size in Kalbadevi Bay but negative correlation in Ratnagiri Bay, whereas they show an unharmonic relationship with sorting. Considering similar hydraulic conditions in all the bays, the existence...

  6. San Francisco Bay National Wildlife Refuge Complex Annual Narrative Report 1983

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The San Francisco Bay National Wildlife Refuge Complex comprises of three refuges including the San Francisco Bay National Wildlife Refuge, the San Pablo Bay...

  7. San Francisco Bay National Wildlife Refuge Complex Annual Narrative Report 1981

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The San Francisco Bay National Wildlife Refuge Complex comprises of three refuges including the San Francisco Bay National Wildlife Refuge, the San Pablo Bay...

  8. San Francisco Bay National Wildlife Refuge Complex Annual Narrative Report 1977

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The San Francisco Bay National Wildlife Refuge Complex comprises of three refuges including the San Francisco Bay National Wildlife Refuge, the San Pablo Bay...

  9. 扇贝闭壳肌薄层干燥的数学模型%Mathematic models of thin layer drying in scallop adductor

    Institute of Scientific and Technical Information of China (English)

    俞微微; 刘俊荣; 沈建; 丛海花

    2015-01-01

    The hot air convective drying characteristics of scallop adductor were investigated.The pretreated samples were dried at 45, 55, 65 and 75 ℃, and weighed in a 15 min interval in the first hour, in a 30 min interval in second hour, and in a 60 min interval thereafter at falling speed.Five thin layer drying models including Henderson-Pabis, Wang and Singh, Diamante et al., Page and Newton were established based on the experimental data for the test model by correlation coefficient(R),decision coefficient(R2),average deviation(eave), Chi-square test(χ2),root-mean-square error(RMSE)and lelative average deviation(P)in order to screen a suitable drying curve.It was found that four models(Henderson-Pabis, Diamante et al., Page and Newton)were proved to be effective.Furthermore, the effects of temperature on model constants of the four models were analyzed, and the three general models(Henderson-Pabis, Page, and Newton)including drying temperature as variable were effectively used to predict the drying process effectively in the drying temperature range from 45℃ to 75℃.The models were expressed as MRH=0.9673exp[-(7×10-5T-0.0009)]t, MRP=exp(-0.00323t0.0039T+0.7727)and MRN=exp[-(7×10-5T-0.0008)]t.%以栉孔扇贝Chlamys farreri闭壳肌为研究对象, 对其热风干燥特性进行了研究.将扇贝样品经处理后于45、 55、65、 75 ℃ 温度下进行热风干燥, 监测样品的质量变化, 所采取的监测频率为干燥开始的第1小时监测4次, 第2小时监测2次, 第3小时后每小时监测1次, 所有的干燥过程都处于降速阶段, 并用薄层干燥模型对测量结果进行处理, 选用Henderson-Pabis、Wang and Singh、Diamante et al.、Page、Newton 5种数学模型进行拟合, 通过计算相关系数(R)、 决定系数(R2)、 平均偏差(eave)、 卡方检验(χ2)、 均方根误差(RMSE)、 相对平均偏差(P)的大小, 来检验拟合程度.结果表明: 在45、55、65、75 ℃ 干燥温度下, Henderson

  10. Performance Characteristics of AOAC Method 2005.06 for the Determination of Paralytic Shellfish Toxins in Manila Clams, European Otter Clams, Grooved Carpet Shell Clams, Surf Clams, and Processed King Scallops.

    Science.gov (United States)

    O'Neill, Alison; Turner, Andrew D

    2015-01-01

    An approach was developed for the verification of method performance of the AOAC 2005.06 LC-fluorescence detector (FLD) method for determination of paralytic shellfish poisoning (PSP) toxins in bivalve shellfish. This was developed following advice published by the Analytical Laboratory Accreditation Criteria Committee and applied to shellfish species that had not been previously subjected to a full single-laboratory validation scheme. The refined approach was developed following the need to assess performance in a number of shellfish species infrequently monitored through the UK statutory monitoring program, while reducing the impact and cost of the studies, most notably in terms of the use of valuable reference standards. The species assessed were manila clams (Ruditapes philippinarum), European otter clams (Lutraria lutraria), grooved carpet shell clams (R. decussatus), surf clams (Spisula solida), and king scallops (Pecten maximus) presented as adductor only or adductor plus roe. The method was assessed for sensitivity in terms of LOD and LOQ, toxin recovery, and method precision in each species. It incorporated the PSP toxins deemed toxic and/or prevalent in UK samples and commercially available as certified reference standards. The toxins studied included GTX1-5, dcSTX, STX, C1&2, and NEO. The toxins dcGTX2&3 were included for surf clams due to the prevalence of these toxins in this species as a result of toxin decarbamoylation. Method performance targets were met for each of the characteristics investigated. Consequently, the method was deemed fit for purpose for the screening and quantification of these clam and scallop species for PSP toxins by AOAC Method 2005.06 LC-FLD.

  11. A Relationship Between Haemocyte Count and Growth of Scallop Chlamys farreri%栉孔扇贝血细胞数量变化与生长的关系

    Institute of Scientific and Technical Information of China (English)

    林听听; 邢婧; 蒋经伟; 战文斌

    2011-01-01

    In this paper, wild and artificial breeding species of scallop Chlamys farreri were collected monthly from two scallop culture areas in Qingdao and Weihai during the period from March 2009 to January 2010. After measurement of shell height, the collected scallops were bled from adductor muscle sinus, and the resulting haemolymph was centrifuged, and haemocyte pellet was collected. Afterwards, the hae-mocyte pellet was resuspended, sonicated and frozen at -80 °C. Subsequently, a monoclonal antibody which was against all types of haemocytes in C. Farreri, and reacted to many protein in haemocytes was screened out as the primary antibody, in the meantime, alkaline phosphatase labeled goat anti-mouse antibody was employed as the secondary antibody in enzyme-linked immunoadsorbent assay (ELISA). Thereafter, the collected haemocyte samples were coated in 96-well plates, and incubated successively with primary antibody, secondary antibody and substrate solution, then read at 405 nm. The results showed that shell height of scallops in two species and two areas both increased from about 2 cm in March 2009 to a-bove 7 cm in January 2010. Additionally, shell height grew fast from April to July, while slow from August to January. Haemocyte count of scallops in two species and two areas both maintained a high level from March to June. After June, it decreased dramatically, and reached the minimum in August or September. Afterwards, it recovered gradually from October to January, however, which was still significantly lower than the level in early 2009. In conclusion, seasonal variation of haemocyte count in C. Farreri didn't present a significant diversity between two species and two areas. Besides, scallops grew fast and had a high haemocyte conut in the period from March to June, while they grew slow and had a low haemocyte conut in the time from August to Otober.%于2009年3月至2010年1月期间,每月中旬分别从青岛和威海两地区采集人工养殖

  12. Dissolved platinum in rainwater, river water and seawater around Tokyo Bay and Otsuchi Bay in Japan

    Science.gov (United States)

    Mashio, Asami Suzuki; Obata, Hajime; Tazoe, Hirofumi; Tsutsumi, Makoto; Ferrer i Santos, Antoni; Gamo, Toshitaka

    2016-10-01

    Platinum, among the rarest elements in the earth's crust, is now widely used in various products such as catalytic converters in automobiles and anticancer drugs. Consequently, the concentration of Pt in urban aquatic environments might be increasing. However, little is known about the distributions and geochemical cycles of Pt in aquatic environments because its overall concentration remains low. In this study, we examined dissolved Pt in river water and seawater around Tokyo Bay and Otsuchi Bay (Iwate Prefecture, Japan) and rainwater in the Tokyo area. To determine sub-picomolar levels of dissolved Pt, we used isotope-dilution Inductively Coupled Plasma Mass Spectrometry (ICP-MS) after column preconcentration with an anion exchange resin. We observed seasonal variation in the dissolved Pt concentrations in Tokyo rainwater in 2002; higher concentrations were found from January to March, which might be related to the pH of rainwaters. At the source of the Arakawa River in the greater Tokyo area, the dissolved Pt concentration was found to be similar to that in rainwater. Further downstream, the dissolved Pt concentration increased sharply, which seemingly reflects the anthropogenic input of Pt into the river. In a rural area in Japan (Otsuchi Bay), the dissolved Pt concentrations were lower than in Tokyo Bay. In this area, a sharp increase in dissolved Pt concentrations was observed in a high salinity region. Contrasting Pt distribution patterns between urban and rural areas indicate that strong anthropogenic Pt sources exist in urban estuaries and that geochemical processes within estuaries affect the Pt distribution.

  13. 78 FR 46813 - Safety Zone; Evening on the Bay Fireworks; Sturgeon Bay, WI

    Science.gov (United States)

    2013-08-02

    ... Department of Homeland Security FR Federal Register NPRM Notice of Proposed Rulemaking TFR Temporary Final..., WI AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a temporary safety zone in Sturgeon Bay, WI. This temporary safety zone will restrict vessels from a...

  14. 78 FR 55216 - Safety Zone: Suisun Bay Electromagnetic Scan and Ordnance Recovery, Suisun Bay, Concord, CA

    Science.gov (United States)

    2013-09-10

    ... Acronyms DHS Department of Homeland Security DoD Department of Defense FR Federal Register MMRP Military..., 2013 in the navigable waters of the Suisun Bay, CA as depicted in National Oceanic and Atmospheric... and Interference with Constitutionally Protected Property Rights. 9. Civil Justice Reform This...

  15. 78 FR 38580 - Special Local Regulation; Tall Ships Celebration Bay City, Bay City, MI

    Science.gov (United States)

    2013-06-27

    ...; Tall Ship Safety Zones; War of 1812 Bicentennial Commemoration, Great Lakes (78 FR 25410), proposing to... various events throughout the Great Lakes this summer, to include the Tall Ships Celebration Bay City... Challenge Great Lakes 2013 from June 13, 2013 to September 17, 2013. B. Basis and Purpose Between 12:30...

  16. Management case study: Tampa Bay, Florida

    Science.gov (United States)

    Morrison, Gerold; Greening, Holly; Yates, Kimberly K.; Wolanski, Eric; McLusky, Donald S.

    2011-01-01

    Tampa Bay, Florida, USA, is a shallow, subtropical estuary that experienced severe cultural eutrophication between the 1940s and 1980s, a period when the human population of its watershed quadrupled. In response, citizen action led to the formation of a public- and private-sector partnership (the Tampa Bay Estuary Program), which adopted a number of management objectives to support the restoration and protection of the bay’s living resources. These included numeric chlorophyll a and water-clarity targets, as well as long-term goals addressing the spatial extent of seagrasses and other selected habitat types, to support estuarine-dependent faunal guilds. Over the past three decades, nitrogen controls involving sources such as wastewater treatment plants, stormwater conveyance systems, fertilizer manufacturing and shipping operations, and power plants have been undertaken to meet these and other management objectives. Cumulatively, these controls have resulted in a 60% reduction in annual total nitrogen (TN) loads relative to earlier worse-case (latter 1970s) conditions. As a result, annual water-clarity and chlorophyll a targets are currently met in most years, and seagrass cover measured in 2008 was the highest recorded since 1950. Factors that have contributed to the observed improvements in Tampa Bay over the past several decades include the following: (1) Development of numeric, science-based water-quality targets to meet a long-term goal of restoring seagrass acreage to 1950s levels. Empirical and mechanistic models found that annual average chlorophyll a concentrations were a primary manageable factor affecting light attenuation. The models also quantified relationships between TN loads, chlorophyll a concentrations, light attenuation, and fluctuations in seagrass cover. The availability of long-term monitoring data, and a systematic process for using the data to evaluate the effectiveness of management actions, has allowed managers to track progress and

  17. U. S. groups fight James Bay II

    Energy Technology Data Exchange (ETDEWEB)

    This article reviews the opposition program to the James Bay II hydroelectric project. The environmental costs of the first phase of James Bay, the La Grande project, have been huge, resulting in massive alterations of the environment and causing widespread mercury poisoning of fish, loss of wetlands and disruption of caribou calving grounds. Start-up of the Great Whale project is imminent, and will result in the flooding of ca 5,000 square kilometers of wilderness. The environmental costs of phases 2 and 3 will be even larger than for the first phase, with potential for significant disruption of fresh-water input into James and Hudson Bays. Drastic changes in the volume and salinity of the water will jeopardize the life patterns of many migratory birds, polar bears, beluga wales, seals and other wildlife. These, along with other social costs, are prohibitive for the Cree. The Cree have been actively opposing the project in the United States, and a groundswell of American opposition has been building. The Cree have been successful in persuading Bangor, Maine, to cancel a proposed contract with Hydro Quebec, on economic grounds. Opposition is building in Burlington, Vermont, to a contract with Hydro Quebec for the planned purchase of 15 MW of power from Hydro Quebec. Secret contracts between Hydro Quebec and thirteen multinational aluminum corporations, to supply power at below cost, have been publicized. The signing of an energy contract between New York and Quebec has been delayed for one year due to the inability of Hydro Quebec to make progress on the project in the face of opposition at home.

  18. From Bayes to PDEs in image warping

    DEFF Research Database (Denmark)

    Nielsen, Mads; Markussen, Bo

    2006-01-01

    In many disciplines of computer vision, such as stereo vision, flow computation, medical image registration, the essential computational problem is the geometrical alignment of images. In this chapter we describe how such an alignment may be obtained as statistical optimal through solving a partial...... differential equation (PDE) in the matching function. We treat different choices of matching criteria such as minimal square difference, maximal correlation, maximal mutual information, and several smoothness criteria. All are treated from a Bayes point of view leading to a functional minimization problem...

  19. Verification of the Chesapeake Bay Model.

    Science.gov (United States)

    1981-12-01

    line of the five cups was about 0.045 ft above the bottom of the meter frame; 30 STEPPING MOTOR 200 STEPS REVOLUTION TRANSLATOR SRPPOT.E SELECTOR DIST...about 0.1 ft in the model, represented a horizontal width of about 100 ft in the prototype. The height of the meter cups , about 0.04 ft, represented...the entire bay. Although station-to-station wind magnitude comparisons cannot be made due to variations in anemometer height and exposure, wind-field

  20. 33 CFR 110.75 - Corpus Christi Bay, Tex.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Corpus Christi Bay, Tex. 110.75... ANCHORAGE REGULATIONS Special Anchorage Areas § 110.75 Corpus Christi Bay, Tex. (a) South area. Southward of... said breakwater; and eastward of the Corpus Christi sea wall....

  1. 33 CFR 80.1132 - Estero-Morro Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Estero-Morro Bay, CA. 80.1132 Section 80.1132 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1132 Estero-Morro Bay, CA. A line drawn...

  2. 33 CFR 80.1112 - Newport Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Newport Bay, CA. 80.1112 Section 80.1112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1112 Newport Bay, CA. A line drawn from...

  3. 33 CFR 80.1106 - Mission Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Mission Bay, CA. 80.1106 Section 80.1106 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1106 Mission Bay, CA. A line drawn from...

  4. 33 CFR 80.1130 - San Luis Obispo Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false San Luis Obispo Bay, CA. 80.1130 Section 80.1130 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1130 San Luis Obispo Bay, CA. A line drawn...

  5. 33 CFR 80.1150 - Arcata-Humboldt Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Arcata-Humboldt Bay, CA. 80.1150 Section 80.1150 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1150 Arcata-Humboldt Bay, CA. A line drawn...

  6. Flood Risk Mitigation for the Jamaica Bay Area

    NARCIS (Netherlands)

    Aarnink, J.L.; De Boer, R.; Evers, G.A.; Kruis, M.C.; Van der Valk, K.

    2014-01-01

    Project Jamaica Bay is a response to superstorm Sandy, occurring in October, 2012. The storm was a disaster for New York City, causing around 50 billion US dollars of damage. Research shows that 75% of the expected annual dam-age in New York occurs around the Jamaica Bay area. Another problem that h

  7. Modelling of hydrodynamic circulation in Benoa Bay, Bali

    DEFF Research Database (Denmark)

    Ningsih, Nining Sari; Muchamad, Al Azhar

    2013-01-01

    A simulation of water level, velocity, salinity, and temperature in the Bay of Benoa has been carried out using a three-dimensional hydrodynamic Estuarine and Coastal Ocean Model incorporating a main characteristic of southward transport of the Indonesian throughflow at the offshore area of the bay...

  8. Neutron calibration sources in the Daya Bay experiment

    Energy Technology Data Exchange (ETDEWEB)

    Liu, J., E-mail: jianglai.liu@sjtu.edu.cn [Department of Physics, Shanghai Jiao Tong University, Shanghai (China); Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Carr, R. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Dwyer, D.A. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Lawrence Berkeley National Laboratory, Berkeley, CA (United States); Gu, W.Q. [Department of Physics, Shanghai Jiao Tong University, Shanghai (China); Li, G.S., E-mail: lgs1029@sjtu.edu.cn [Department of Physics, Shanghai Jiao Tong University, Shanghai (China); McKeown, R.D. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Department of Physics, College of William and Mary, Williamsburg, VA (United States); Qian, X. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Brookhaven National Laboratory, Upton, NY (United States); Tsang, R.H.M. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Department of Physics and Astronomy, University of Alabama, Tuscaloosa, AL 35487 (United States); Wu, F.F. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Zhang, C. [Kellogg Radiation Laboratory, California Institute of Technology, Pasadena, CA (United States); Brookhaven National Laboratory, Upton, NY (United States)

    2015-10-11

    We describe the design and construction of the low rate neutron calibration sources used in the Daya Bay Reactor Anti-neutrino Experiment. Such sources are free of correlated gamma-neutron emission, which is essential in minimizing induced background in the anti-neutrino detector. The design characteristics have been validated in the Daya Bay anti-neutrino detector.

  9. An overview of the Daya Bay Reactor Neutrino Experiment

    CERN Document Server

    Cao, Jun

    2016-01-01

    The Daya Bay Reactor Neutrino Experiment discovered an unexpectedly large neutrino oscillation related to the mixing angle $\\theta_{13}$ in 2012. This finding paved the way to the next generation of neutrino oscillation experiments. In this article, we review the history, featured design, and scientific results of Daya Bay. Prospects of the experiment are also described.

  10. Characteristic mixing triangles in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Varkey, M.J.; Sastry, J.S.

    Temperature-salinity structures in the inner part of Bay of Bengal showed complete mixing processes in the upper bay, less than about 600 m can be characterisEd. by a mixing triangle constitutEd. by three characteristic water properties. In outer...

  11. Baseline surveys of Lac Bay benthic and fish communities, Bonaire

    NARCIS (Netherlands)

    Debrot, A.O.; Hylkema, A.; Vogelaar, W.; Meesters, H.W.G.; Engel, M.S.; Leon, R.; Prud'homme van Reine, W.F.; Nagelkerken, I.

    2012-01-01

    Lac Bay is a clear-water, 5 m deep shallow tropical lagoon of 7 km2 opening onto the wave and wind exposed east coast of the island of Bonaire, southern Caribbean. Over the last decades land reclamation by mangroves in Lac has been expanding the surface of turbid, saline backwaters into the bay at a

  12. 46 CFR 7.110 - Mamala Bay, HI.

    Science.gov (United States)

    2010-10-01

    ... 46 Shipping 1 2010-10-01 2010-10-01 false Mamala Bay, HI. 7.110 Section 7.110 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES APPLICABLE TO THE PUBLIC BOUNDARY LINES Hawaii § 7.110 Mamala Bay, HI. A line drawn from Barbers Point Light to Diamond Head Light. Pacific Coast...

  13. 33 CFR 80.1420 - Mamala Bay, Oahu, HI.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Mamala Bay, Oahu, HI. 80.1420 Section 80.1420 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Islands § 80.1420 Mamala Bay, Oahu, HI. A line drawn...

  14. 33 CFR 80.1430 - Kaneohe Bay, Oahu, HI.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Kaneohe Bay, Oahu, HI. 80.1430 Section 80.1430 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Islands § 80.1430 Kaneohe Bay, Oahu, HI. A straight...

  15. Flood Risk Mitigation for the Jamaica Bay Area

    NARCIS (Netherlands)

    Aarnink, J.L.; De Boer, R.; Evers, G.A.; Kruis, M.C.; Van der Valk, K.

    2014-01-01

    Project Jamaica Bay is a response to superstorm Sandy, occurring in October, 2012. The storm was a disaster for New York City, causing around 50 billion US dollars of damage. Research shows that 75% of the expected annual dam-age in New York occurs around the Jamaica Bay area. Another problem that h

  16. 33 CFR 80.1144 - Bodega and Tomales Bay, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Bodega and Tomales Bay, CA. 80... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1144 Bodega and Tomales Bay, CA. (a... of Bodega Harbor North Breakwater to Bodega Harbor Entrance Light 1....

  17. Neutron Calibration Sources in the Daya Bay Experiment

    CERN Document Server

    Liu, J; Dwyer, D A; Gu, W Q; Li, G S; McKeown, R D; Qian, X; Tsang, R H M; Wu, F F; Zhang, C

    2015-01-01

    We describe the design and construction of the low rate neutron calibration sources used in the Daya Bay Reactor Anti-neutrino Experiment. Such sources are free of correlated gamma-neutron emission, which is essential in minimizing induced background in the anti-neutrino detector. The design characteristics have been validated in the Daya Bay anti-neutrino detector.

  18. 33 CFR 110.45 - Onset Bay, Mass.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Onset Bay, Mass. 110.45 Section 110.45 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.45 Onset Bay, Mass. Northerly of a line extending...

  19. A support system for predicting eBay end prices.

    NARCIS (Netherlands)

    D.P. van Heijst (Dennis); R. Potharst (Rob); M.C. van Wezel (Michiel)

    2006-01-01

    textabstractIn this report a support system for predicting end prices on eBay is proposed. The end price predictions are based on the item descriptions found in the item listings of eBay, and on some numerical item features. The system uses text mining and boosting algorithms from the field of mach

  20. Intertidal sediments and benthic animals of Roebuck Bay, Western Australia

    NARCIS (Netherlands)

    Pepping, M.; Piersma, T.; Pearson, G.; Lavaleye, M.

    1999-01-01

    Roebuck Bay near Broome (NW Australia) is with itsextensive tidal flats one of the foremost internationallyimportant sites for shorebirds in the Asia-Pacificflyway system. It is home to 150,000 shorebirds (or‘waders’) in the nonbreeding season, which suggeststhat the intertidal flats of the bay have