Assessing Monkeypox Virus Prevalence in Small Mammals at the Human–Animal Interface in the Democratic Republic of the Congo

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Jeffrey B. Doty

2017-10-01

Full Text Available During 2012, 2013 and 2015, we collected small mammals within 25 km of the town of Boende in Tshuapa Province, the Democratic Republic of the Congo. The prevalence of monkeypox virus (MPXV in this area is unknown; however, cases of human infection were previously confirmed near these collection sites. Samples were collected from 353 mammals (rodents, shrews, pangolins, elephant shrews, a potamogale, and a hyrax. Some rodents and shrews were captured from houses where human monkeypox cases have recently been identified, but most were trapped in forests and agricultural areas near villages. Real-time PCR and ELISA were used to assess evidence of MPXV infection and other Orthopoxvirus (OPXV infections in these small mammals. Seven (2.0% of these animal samples were found to be anti-orthopoxvirus immunoglobulin G (IgG antibody positive (six rodents: two Funisciurus spp.; one Graphiurus lorraineus; one Cricetomys emini; one Heliosciurus sp.; one Oenomys hypoxanthus, and one elephant shrew Petrodromus tetradactylus; no individuals were found positive in PCR-based assays. These results suggest that a variety of animals can be infected with OPXVs, and that epidemiology studies and educational campaigns should focus on animals that people are regularly contacting, including larger rodents used as protein sources.

Assessing Monkeypox Virus Prevalence in Small Mammals at the Human-Animal Interface in the Democratic Republic of the Congo.

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Doty, Jeffrey B; Malekani, Jean M; Kalemba, Lem's N; Stanley, William T; Monroe, Benjamin P; Nakazawa, Yoshinori U; Mauldin, Matthew R; Bakambana, Trésor L; Liyandja Dja Liyandja, Tobit; Braden, Zachary H; Wallace, Ryan M; Malekani, Divin V; McCollum, Andrea M; Gallardo-Romero, Nadia; Kondas, Ashley; Peterson, A Townsend; Osorio, Jorge E; Rocke, Tonie E; Karem, Kevin L; Emerson, Ginny L; Carroll, Darin S

2017-10-03

During 2012, 2013 and 2015, we collected small mammals within 25 km of the town of Boende in Tshuapa Province, the Democratic Republic of the Congo. The prevalence of monkeypox virus (MPXV) in this area is unknown; however, cases of human infection were previously confirmed near these collection sites. Samples were collected from 353 mammals (rodents, shrews, pangolins, elephant shrews, a potamogale, and a hyrax). Some rodents and shrews were captured from houses where human monkeypox cases have recently been identified, but most were trapped in forests and agricultural areas near villages. Real-time PCR and ELISA were used to assess evidence of MPXV infection and other Orthopoxvirus (OPXV) infections in these small mammals. Seven (2.0%) of these animal samples were found to be anti-orthopoxvirus immunoglobulin G (IgG) antibody positive (six rodents: two Funisciurus spp.; one Graphiurus lorraineus ; one Cricetomys emini ; one Heliosciurus sp.; one Oenomys hypoxanthus , and one elephant shrew Petrodromus tetradactylus ); no individuals were found positive in PCR-based assays. These results suggest that a variety of animals can be infected with OPXVs, and that epidemiology studies and educational campaigns should focus on animals that people are regularly contacting, including larger rodents used as protein sources.

Generation and Characterization of a Double Recombinant Monkeypox Virus for use in Animal Model Development and Therapeutic Evaluation

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2012-09-27

protect the virions from normal host immune responses (4, 41). Orthopoxviruses are genetically and antigenically similar. The central regions of...model for smallpox disease (35). Challenges associated with working with MPXV include the use of Bio Safety Level 3+ (BSL-3+) facilities in...release of weaponized variola or monkeypox, and ongoing monkeypox outbreaks in Africa have prompted investigations into the development of new vaccine

Stunned Silence: Gene Expression Programs in Human Cells Infected with Monkeypox or Vaccinia Virus

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Rubins, Kathleen H.; Hensley, Lisa E.; Relman, David A.; Brown, Patrick O.

2011-01-01

Poxviruses use an arsenal of molecular weapons to evade detection and disarm host immune responses. We used DNA microarrays to investigate the gene expression responses to infection by monkeypox virus (MPV), an emerging human pathogen, and Vaccinia virus (VAC), a widely used model and vaccine organism, in primary human macrophages, primary human fibroblasts and HeLa cells. Even as the overwhelmingly infected cells approached their demise, with extensive cytopathic changes, their gene expression programs appeared almost oblivious to poxvirus infection. Although killed (gamma-irradiated) MPV potently induced a transcriptional program characteristic of the interferon response, no such response was observed during infection with either live MPV or VAC. Moreover, while the gene expression response of infected cells to stimulation with ionomycin plus phorbol 12-myristate 13-acetate (PMA), or poly (I-C) was largely unimpaired by infection with MPV, a cluster of pro-inflammatory genes were a notable exception. Poly(I-C) induction of genes involved in alerting the innate immune system to the infectious threat, including TNF-alpha, IL-1 alpha and beta, CCL5 and IL-6, were suppressed by infection with live MPV. Thus, MPV selectively inhibits expression of genes with critical roles in cell-signaling pathways that activate innate immune responses, as part of its strategy for stealthy infection. PMID:21267444

Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus.

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Kathleen H Rubins

2011-01-01

Full Text Available Poxviruses use an arsenal of molecular weapons to evade detection and disarm host immune responses. We used DNA microarrays to investigate the gene expression responses to infection by monkeypox virus (MPV, an emerging human pathogen, and Vaccinia virus (VAC, a widely used model and vaccine organism, in primary human macrophages, primary human fibroblasts and HeLa cells. Even as the overwhelmingly infected cells approached their demise, with extensive cytopathic changes, their gene expression programs appeared almost oblivious to poxvirus infection. Although killed (gamma-irradiated MPV potently induced a transcriptional program characteristic of the interferon response, no such response was observed during infection with either live MPV or VAC. Moreover, while the gene expression response of infected cells to stimulation with ionomycin plus phorbol 12-myristate 13-acetate (PMA, or poly (I-C was largely unimpaired by infection with MPV, a cluster of pro-inflammatory genes were a notable exception. Poly(I-C induction of genes involved in alerting the innate immune system to the infectious threat, including TNF-alpha, IL-1 alpha and beta, CCL5 and IL-6, were suppressed by infection with live MPV. Thus, MPV selectively inhibits expression of genes with critical roles in cell-signaling pathways that activate innate immune responses, as part of its strategy for stealthy infection.

Presumptive risk factors for monkeypox in rural communities in the Democratic Republic of the Congo.

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Claire A Quiner

Full Text Available Monkeypox virus (MPXV, a close relative of Variola virus, is a zoonotic virus with an unknown reservoir. Interaction with infected wildlife, bites from peri-domestic animals, and bushmeat hunting are hypothesized routes of infection from wildlife to humans. Using a Risk Questionnaire, performed in monkeypox-affected areas of rural Democratic Republic of the Congo, we describe the lifestyles and demographics associated with presumptive risk factors for MPXV infection. We generated two indices to assess risk: Household Materials Index (HMI, a proxy for socioeconomic status of households and Risk Activity Index (RAI, which describes presumptive risk for animal-to-human transmission of MPXV. Based on participant self-reported activity patterns, we found that people in this population are more likely to visit the forest than a market to fulfill material needs, and that the reported occupation is limited in describing behavior of individuals may participate. Being bitten by rodents in the home was commonly reported, and this was significantly associated with a low HMI. The highest scoring RAI sub-groups were 'hunters' and males aged ≥ 18 years; however, several activities involving MPXV-implicated animals were distributed across all sub-groups. The current analysis may be useful in identifying at-risk groups and help to direct education, outreach and prevention efforts more efficiently.

Monkeypox disease transmission in an experimental setting: prairie dog animal model.

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Christina L Hutson

Full Text Available Monkeypox virus (MPXV is considered the most significant human public health threat in the genus Orthopoxvirus since the eradication of variola virus (the causative agent of smallpox. MPXV is a zoonotic agent endemic to forested areas of Central and Western Africa. In 2003, MPXV caused an outbreak in the United States due to the importation of infected African rodents, and subsequent sequential infection of North American prairie dogs (Cynomys ludovicianus and humans. In previous studies, the prairie dog MPXV model has successfully shown to be very useful for understanding MPXV since the model emulates key characteristics of human monkeypox disease. In humans, percutaneous exposure to animals has been documented but the primary method of human-to-human MPXV transmission is postulated to be by respiratory route. Only a few animal model studies of MPXV transmission have been reported. Herein, we show that MPXV infected prairie dogs are able to transmit the virus to naive animals through multiple transmission routes. All secondarily exposed animals were infected with MPXV during the course of the study. Notably, animals secondarily exposed appeared to manifest more severe disease; however, the disease course was very similar to those of experimentally challenged animals including inappetence leading to weight loss, development of lesions, production of orthopoxvirus antibodies and shedding of similar levels or in some instances higher levels of MPXV from the oral cavity. Disease was transmitted via exposure to contaminated bedding, co-housing, or respiratory secretions/nasal mucous (we could not definitively say that transmission occurred via respiratory route exclusively. Future use of the model will allow us to evaluate infection control measures, vaccines and antiviral strategies to decrease disease transmission.

Pathogen-Host Associations and Predicted Range Shifts of Human Monkeypox in Response to Climate Change in Central Africa

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Thomassen, Henri A.; Fuller, Trevon; Asefi-Najafabady, Salvi; Shiplacoff, Julia A. G.; Mulembakani, Prime M.; Blumberg, Seth; Johnston, Sara C.; Kisalu, Neville K.; Kinkela, Timothée L.; Fair, Joseph N.; Wolfe, Nathan D.; Shongo, Robert L.; LeBreton, Matthew; Meyer, Hermann; Wright, Linda L.; Muyembe, Jean-Jacques; Buermann, Wolfgang; Okitolonda, Emile; Hensley, Lisa E.; Lloyd-Smith, James O.; Smith, Thomas B.; Rimoin, Anne W.

2013-01-01

Climate change is predicted to result in changes in the geographic ranges and local prevalence of infectious diseases, either through direct effects on the pathogen, or indirectly through range shifts in vector and reservoir species. To better understand the occurrence of monkeypox virus (MPXV), an emerging Orthopoxvirus in humans, under contemporary and future climate conditions, we used ecological niche modeling techniques in conjunction with climate and remote-sensing variables. We first created spatially explicit probability distributions of its candidate reservoir species in Africa's Congo Basin. Reservoir species distributions were subsequently used to model current and projected future distributions of human monkeypox (MPX). Results indicate that forest clearing and climate are significant driving factors of the transmission of MPX from wildlife to humans under current climate conditions. Models under contemporary climate conditions performed well, as indicated by high values for the area under the receiver operator curve (AUC), and tests on spatially randomly and non-randomly omitted test data. Future projections were made on IPCC 4th Assessment climate change scenarios for 2050 and 2080, ranging from more conservative to more aggressive, and representing the potential variation within which range shifts can be expected to occur. Future projections showed range shifts into regions where MPX has not been recorded previously. Increased suitability for MPX was predicted in eastern Democratic Republic of Congo. Models developed here are useful for identifying areas where environmental conditions may become more suitable for human MPX; targeting candidate reservoir species for future screening efforts; and prioritizing regions for future MPX surveillance efforts. PMID:23935820

Comparative Pathology of Smallpox and Monkeypox in Man and Macaques

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Cann, J. A.; Jahrling, P. B.; Hensley, L. E.; Wahl-Jensen, V.

2012-01-01

Summary In the three decades since the eradication of smallpox and cessation of routine vaccination, the collective memory of the devastating epidemics caused by this orthopoxvirus has waned, and the human population has become increasingly susceptible to a disease that remains high on the list of possible bioterrorism agents. Research using surrogate orthopoxviruses in their natural hosts, as well as limited variola virus research in animal models, continues worldwide; however, interpretation of findings is often limited by our relative lack of knowledge about the naturally occurring disease. For modern comparative pathologists, many of whom have no first-hand knowledge of naturally occurring smallpox, this work provides a contemporary review of this historical disease, as well as discussion of how it compares with human monkeypox and the corresponding diseases in macaques. PMID:22884034

Improving the Care and Treatment of Monkeypox Patients in Low-Resource Settings: Applying Evidence from Contemporary Biomedical and Smallpox Biodefense Research

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Mary G. Reynolds

2017-12-01

Full Text Available Monkeypox is a smallpox-like illness that can be accompanied by a range of significant medical complications. To date there are no standard or optimized guidelines for the clinical management of monkeypox (MPX patients, particularly in low-resource settings. Consequently, patients can experience protracted illness and poor outcomes. Improving care necessitates developing a better understanding of the range of clinical manifestations—including complications and sequelae—as well as of features of illness that may be predictive of illness severity and poor outcomes. Experimental and natural infection of non-human primates with monkeypox virus can inform the approach to improving patient care, and may suggest options for pharmaceutical intervention. These studies have traditionally been performed to address the threat of smallpox bioterrorism and were designed with the intent of using MPX as a disease surrogate for smallpox. In many cases this necessitated employing high-dose, inhalational or intravenous challenge to recapitulate the severe manifestations of illness seen with smallpox. Overall, these data—and data from biomedical research involving burns, superficial wounds, herpes, eczema vaccinatum, and so forth—suggest that MPX patients could benefit from clinical support to mitigate the consequences of compromised skin and mucosa. This should include prevention and treatment of secondary bacterial infections (and other complications, ensuring adequate hydration and nutrition, and protecting vulnerable anatomical locations such as the eyes and genitals. A standard of care that considers these factors should be developed and assessed in different settings, using clinical metrics specific for MPX alongside consideration of antiviral therapies.

Virus diseases in lettuce in the Mediterranean basin.

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Moreno, Aranzazu; Fereres, Alberto

2012-01-01

Lettuce is frequently attacked by several viruses causing disease epidemics and considerable yield losses along the Mediterranean basin. Aphids are key pests and the major vectors of plant viruses in lettuce fields. Lettuce mosaic virus (LMV) is probably the most important because it is seed-transmitted in addition to be transmissible by many aphid species that alight on the crop. Tomato spotted wilt virus (TSWV) is another virus that causes severe damage since the introduction of its major vector, the thrips Frankliniella occidentalis. In regions with heavy and humid soils, Lettuce Mirafiori big-vein virus (LMBVV) can also produce major yield losses. Copyright © 2012 Elsevier Inc. All rights reserved.

Development of a model describing virus removal process in an activated sludge basin

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Kim, T.; Shiragami, N. Unno, H. [Tokyo Institute of Technology, Tokyo (Japan)

1995-06-20

The virus removal process from the liquid phase in an activated sludge basin possibly consists of physicochemical processes, such as adsorption onto sludge flocs, biological processes such as microbial predating and inactivation by virucidal components excreted by microbes. To describe properly the virus behavior in an activated sludge basin, a simple model is proposed based on the experimental data obtained using a poliovirus type 1. A three-compartments model, which include the virus in the liquid phase and in the peripheral and inner regions of sludge flocs is employed. By using the model, the Virus removal process was successfully simulated to highlight the implication of its distribution in the activated sludge basin. 17 refs., 8 figs.

Modified vaccinia virus Ankara protects macaques against respiratory challenge with monkeypox virus.

NARCIS (Netherlands)

K.J. Stittelaar (Koert); G. van Amerongen (Geert); I. Kondova (Ivanela); R.F. van Lavieren (Rob); F.H. Pistoor (Frank); H.G.M. Niesters (Bert); G.J.J. van Doornum (Gerard); B.A.M. van der Zeijst (Ben); L. Mateo (Luis); P.J. Chaplin (Paul); A.D.M.E. Osterhaus (Albert); T. Kuiken (Thijs)

2005-01-01

textabstractThe use of classical smallpox vaccines based on vaccinia virus (VV) is associated with severe complications in both naive and immune individuals. Modified vaccinia virus Ankara (MVA), a highly attenuated replication-deficient strain of VV, has been proven to be safe in humans and

Ectromelia Virus Infections of Mice as a Model to Support the Licensure of Anti-Orthopoxvirus Therapeutics

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R. Mark Buller

2010-09-01

Full Text Available The absence of herd immunity to orthopoxviruses and the concern that variola or monkeypox viruses could be used for bioterroristic activities has stimulated the development of therapeutics and safer prophylactics. One major limitation in this process is the lack of accessible human orthopoxvirus infections for clinical efficacy trials; however, drug licensure can be based on orthopoxvirus animal challenge models as described in the “Animal Efficacy Rule”. One such challenge model uses ectromelia virus, an orthopoxvirus, whose natural host is the mouse and is the etiological agent of mousepox. The genetic similarity of ectromelia virus to variola and monkeypox viruses, the common features of the resulting disease, and the convenience of the mouse as a laboratory animal underscores its utility in the study of orthopoxvirus pathogenesis and in the development of therapeutics and prophylactics. In this review we outline how mousepox has been used as a model for smallpox. We also discuss mousepox in the context of mouse strain, route of infection, infectious dose, disease progression, and recovery from infection.

Smallpox virus resequencing GeneChips can also rapidly ascertain species status for some zoonotic non-variola orthopoxviruses.

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Sulaiman, Irshad M; Sammons, Scott A; Wohlhueter, Robert M

2008-04-01

We recently developed a set of seven resequencing GeneChips for the rapid sequencing of Variola virus strains in the WHO Repository of the Centers for Disease Control and Prevention. In this study, we attempted to hybridize these GeneChips with some known non-Variola orthopoxvirus isolates, including monkeypox, cowpox, and vaccinia viruses, for rapid detection.

A Study of Waste Management within the COL Florence A. Blanchfield Army Community Hospital, Fort Campbell, Kentucky.

Science.gov (United States)

1981-08-01

besnoiti Borna disease virus Bovine infectious petechial fever virus Camel pox virus Ephemeral fever virus Fowl plague virus Goat pox virus Hog...Varicella virus Vole rickettsia Yellow fever virus, 17D vaccine strain 69 Class 3 Alastrun, smallpox, monkeypox, and whitepox, when used in vitro Arbovirus...animal inoculation experiments Vesicular stomatitis virus Yellow fever virus - wild when used in vitro Class 4 Alastrun, smallpox, monkeypox, and

[Monkeypox: second human case observed in Ivory Coast (rural health sector of Daloa].

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Merouze, F; Lesoin, J J

1983-01-01

A second case of human monkeypox (world fifty-forth case) has been observed in Ivory Coast (rural health sector of Daloa). A three years old girl presented a major pox-like eruption which evolved to recovery. The authors describe the eruption, the evolution of the sickness, and the scars observed at the fourth month after recovery. It has not been possible to prove neither animal-human nor interhuman contagion.

Enhancing case definitions for surveillance of human monkeypox in the Democratic Republic of Congo.

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Lynda Osadebe

2017-09-01

Full Text Available Human monkeypox (MPX occurs at appreciable rates in the Democratic Republic of Congo (DRC. Infection with varicella zoster virus (VZV has a similar presentation to that of MPX, and in areas where MPX is endemic these two illnesses are commonly mistaken. This study evaluated the diagnostic utility of two surveillance case definitions for MPX and specific clinical characteristics associated with laboratory-confirmed MPX cases.Data from a cohort of suspect MPX cases (identified by surveillance over the course of a 42 month period during 2009-2014 from DRC were used; real-time PCR diagnostic test results were used to establish MPX and VZV diagnoses. A total of 333 laboratory-confirmed MPX cases, 383 laboratory-confirmed VZV cases, and 36 cases that were determined to not be either MPX or VZV were included in the analyses. Significant (p<0.05 differences between laboratory-confirmed MPX and VZV cases were noted for several signs/symptoms including key rash characteristics. Both surveillance case definitions had high sensitivity and low specificities for individuals that had suspected MPX virus infections. Using 12 signs/symptoms with high sensitivity and/or specificity values, a receiver operator characteristic analysis showed that models for MPX cases that had the presence of 'fever before rash' plus at least 7 or 8 of the 12 signs/symptoms demonstrated a more balanced performance between sensitivity and specificity.Laboratory-confirmed MPX and VZV cases presented with many of the same signs and symptoms, and the analysis here emphasized the utility of including 12 specific signs/symptoms when investigating MPX cases. In order to document and detect endemic human MPX cases, a surveillance case definition with more specificity is needed for accurate case detection. In the absence of a more specific case definition, continued emphasis on confirmatory laboratory-based diagnostics is warranted.

Monkeypox

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... rodents being the major reservoir of the virus. Eating inadequately cooked meat of infected animals is a possible risk factor. Secondary, or human- ... endemic regions should focus on thoroughly cooking all animal products ... before eating. Gloves and other appropriate protective clothing should be ...

Antiviral activity of the EB peptide against zoonotic poxviruses

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Altmann Sharon E

2012-01-01

Full Text Available Abstract Background The EB peptide is a 20-mer that was previously shown to have broad spectrum in vitro activity against several unrelated viruses, including highly pathogenic avian influenza, herpes simplex virus type I, and vaccinia, the prototypic orthopoxvirus. To expand on this work, we evaluated EB for in vitro activity against the zoonotic orthopoxviruses cowpox and monkeypox and for in vivo activity in mice against vaccinia and cowpox. Findings In yield reduction assays, EB had an EC50 of 26.7 μM against cowpox and 4.4 μM against monkeypox. The EC50 for plaque reduction was 26.3 μM against cowpox and 48.6 μM against monkeypox. A scrambled peptide had no inhibitory activity against either virus. EB inhibited cowpox in vitro by disrupting virus entry, as evidenced by a reduction of the release of virus cores into the cytoplasm. Monkeypox was also inhibited in vitro by EB, but at the attachment stage of infection. EB showed protective activity in mice infected intranasally with vaccinia when co-administered with the virus, but had no effect when administered prophylactically one day prior to infection or therapeutically one day post-infection. EB had no in vivo activity against cowpox in mice. Conclusions While EB did demonstrate some in vivo efficacy against vaccinia in mice, the limited conditions under which it was effective against vaccinia and lack of activity against cowpox suggest EB may be more useful for studying orthopoxvirus entry and attachment in vitro than as a therapeutic against orthopoxviruses in vivo.

Elimination of A-type inclusion formation enhances cowpox virus replication in mice: implications for orthopoxvirus evolution.

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Kastenmayer, Robin J; Maruri-Avidal, Liliana; Americo, Jeffrey L; Earl, Patricia L; Weisberg, Andrea S; Moss, Bernard

2014-03-01

Some orthopoxviruses including cowpox virus embed virus particles in dense bodies, comprised of the A-type inclusion (ATI) protein, which may provide long-term environmental protection. This strategy could be beneficial if the host population is sparse or spread is inefficient or indirect. However, the formation of ATI may be neutral or disadvantageous for orthopoxviruses that rely on direct respiratory spread. Disrupted ATI open reading frames in orthopoxviruses such as variola virus, the agent of smallpox, and monkeypox virus suggests that loss of this feature provided positive selection. To test this hypothesis, we constructed cowpox virus mutants with deletion of the ATI gene or another gene required for embedding virions. The ATI deletion mutant caused greater weight loss and higher replication in the respiratory tract than control viruses, supporting our hypothesis. Deletion of the gene for embedding virions had a lesser effect, possibly due to known additional functions of the encoded protein. Published by Elsevier Inc.

Genome-wide comparison of cowpox viruses reveals a new clade related to Variola virus.

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Piotr Wojtek Dabrowski

Full Text Available Zoonotic infections caused by several orthopoxviruses (OPV like monkeypox virus or vaccinia virus have a significant impact on human health. In Europe, the number of diagnosed infections with cowpox viruses (CPXV is increasing in animals as well as in humans. CPXV used to be enzootic in cattle; however, such infections were not being diagnosed over the last decades. Instead, individual cases of cowpox are being found in cats or exotic zoo animals that transmit the infection to humans. Both animals and humans reveal local exanthema on arms and legs or on the face. Although cowpox is generally regarded as a self-limiting disease, immunosuppressed patients can develop a lethal systemic disease resembling smallpox. To date, only limited information on the complex and, compared to other OPV, sparsely conserved CPXV genomes is available. Since CPXV displays the widest host range of all OPV known, it seems important to comprehend the genetic repertoire of CPXV which in turn may help elucidate specific mechanisms of CPXV pathogenesis and origin. Therefore, 22 genomes of independent CPXV strains from clinical cases, involving ten humans, four rats, two cats, two jaguarundis, one beaver, one elephant, one marah and one mongoose, were sequenced by using massive parallel pyrosequencing. The extensive phylogenetic analysis showed that the CPXV strains sequenced clearly cluster into several distinct clades, some of which are closely related to Vaccinia viruses while others represent different clades in a CPXV cluster. Particularly one CPXV clade is more closely related to Camelpox virus, Taterapox virus and Variola virus than to any other known OPV. These results support and extend recent data from other groups who postulate that CPXV does not form a monophyletic clade and should be divided into multiple lineages.

Mutagenic repair of double-stranded DNA breaks in vaccinia virus genomes requires cellular DNA ligase IV activity in the cytosol.

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Luteijn, Rutger David; Drexler, Ingo; Smith, Geoffrey L; Lebbink, Robert Jan; Wiertz, Emmanuel J H J

2018-04-20

Poxviruses comprise a group of large dsDNA viruses that include members relevant to human and animal health, such as variola virus, monkeypox virus, cowpox virus and vaccinia virus (VACV). Poxviruses are remarkable for their unique replication cycle, which is restricted to the cytoplasm of infected cells. The independence from the host nucleus requires poxviruses to encode most of the enzymes involved in DNA replication, transcription and processing. Here, we use the CRISPR/Cas9 genome engineering system to induce DNA damage to VACV (strain Western Reserve) genomes. We show that targeting CRISPR/Cas9 to essential viral genes limits virus replication efficiently. Although VACV is a strictly cytoplasmic pathogen, we observed extensive viral genome editing at the target site; this is reminiscent of a non-homologous end-joining DNA repair mechanism. This pathway was not dependent on the viral DNA ligase, but critically involved the cellular DNA ligase IV. Our data show that DNA ligase IV can act outside of the nucleus to allow repair of dsDNA breaks in poxvirus genomes. This pathway might contribute to the introduction of mutations within the genome of poxviruses and may thereby promote the evolution of these viruses.

EPIPOX: Immunoinformatic Characterization of the Shared T-Cell Epitome between Variola Virus and Related Pathogenic Orthopoxviruses

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Magdalena Molero-Abraham

2015-01-01

developing new and safer smallpox vaccines. Variola virus genomes are now widely available, allowing computational characterization of the entire T-cell epitome and the use of such information to develop safe and yet effective vaccines. To this end, we identified 124 proteins shared between various species of pathogenic orthopoxviruses including variola minor and major, monkeypox, cowpox, and vaccinia viruses, and we targeted them for T-cell epitope prediction. We recognized 8,106, and 8,483 unique class I and class II MHC-restricted T-cell epitopes that are shared by all mentioned orthopoxviruses. Subsequently, we developed an immunological resource, EPIPOX, upon the predicted T-cell epitome. EPIPOX is freely available online and it has been designed to facilitate reverse vaccinology. Thus, EPIPOX includes key epitope-focused protein annotations: time point expression, presence of leader and transmembrane signals, and known location on outer membrane structures of the infective viruses. These features can be used to select specific T-cell epitopes suitable for experimental validation restricted by single MHC alleles, as combinations thereof, or by MHC supertypes.

Evaluation of Orally Delivered ST-246 as Postexposure Prophylactic and Antiviral Therapeutic in an Aerosolized Rabbitpox Rabbit Model

National Research Council Canada - National Science Library

Nalca, Aysegul; Hatkin, Josh M; Garza, Nicole L; Nichols, Donald K; Norris, Sarah W; Hruby, Dennis E; Jordan, Robert

2008-01-01

Orthopoxviruses, such as variola and monkeypox viruses, can cause severe disease in humans when delivered by the aerosol route, and thus represent significant threats to both military and civilian populations...

Epidemiology of viruses causing chronic hepatitis among populations from the Amazon Basin and related ecosystems

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Echevarría José M.

2003-01-01

Full Text Available On the last twenty years, viral hepatitis has emerged as a serious problem in almost all the Amerindian communities studied in the Amazon Basin and in other Amazon-related ecological systems from the North and Center of South America. Studies performed on communities from Bolivia, Brazil, Colombia, Peru and Venezuela have shown a high endemicity of the hepatitis B virus (HBV infection all over the region, which is frequently associated to a high prevalence of infection by hepatitis D virus among the chronic HBV carriers. Circulation of both agents responds mainly to horizontal virus transmission during childhood through mechanisms that are not fully understood. By contrast, infection by hepatitis C virus (HCV, which is present in all the urban areas of South America, is still very uncommon among them. At the moment, there is not data enough to evaluate properly the true incidence that such endemicity may have on the health of the populations affected. Since viral transmission might be operated by mechanisms that could not be acting in other areas of the World, it seems essential to investigate such mechanisms and to prevent the introduction of HCV into these populations, which consequences for health could be very serious.

The immunology of smallpox vaccines

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Kennedy, Richard B; Ovsyannikova, Inna G; Jacobson, Robert M; Poland, Gregory A

2010-01-01

In spite of the eradication of smallpox over 30 years ago; orthopox viruses such as smallpox and monkeypox remain serious public health threats both through the possibility of bioterrorism and the intentional release of smallpox and through natural outbreaks of emerging infectious diseases such as monkeypox. The eradication effort was largely made possible by the availability of an effective vaccine based on the immunologically cross-protective vaccinia virus. Although the concept of vaccination dates back to the late 1800s with Edward Jenner, it is only in the past decade that modern immunologic tools have been applied toward deciphering poxvirus immunity. Smallpox vaccines containing vaccinia virus elicit strong humoral and cellular immune responses that confer cross-protective immunity against variola virus for decades after immunization. Recent studies have focused on: establishing the longevity of poxvirus-specific immunity, defining key immune epitopes targeted by T and B cells, developing subunit-based vaccines, and developing genotypic and phenotypic immune response profiles that predict either vaccine response or adverse events following immunization. PMID:19524427

Real-Time PCR Assay To Detect Smallpox Virus

Science.gov (United States)

Sofi Ibrahim, M.; Kulesh, David A.; Saleh, Sharron S.; Damon, Inger K.; Esposito, Joseph J.; Schmaljohn, Alan L.; Jahrling, Peter B.

2003-01-01

We developed a highly sensitive and specific assay for the rapid detection of smallpox virus DNA on both the Smart Cycler and LightCycler platforms. The assay is based on TaqMan chemistry with the orthopoxvirus hemagglutinin gene used as the target sequence. With genomic DNA purified from variola virus Bangladesh 1975, the limit of detection was estimated to be approximately 25 copies on both machines. The assay was evaluated in a blinded study with 322 coded samples that included genomic DNA from 48 different isolates of variola virus; 25 different strains and isolates of camelpox, cowpox, ectromelia, gerbilpox, herpes, monkeypox, myxoma, rabbitpox, raccoonpox, skunkpox, vaccinia, and varicella-zoster viruses; and two rickettsial species at concentrations mostly ranging from 100 fg/μl to 1 ng/μl. Contained within those 322 samples were variola virus DNA, obtained from purified viral preparations, at concentrations of 1 fg/μl to 1 ng/μl. On the Smart Cycler platform, 2 samples with false-positive results were detected among the 116 samples not containing variola virus tested; i.e., the overall specificity of the assay was 98.3%. On the LightCycler platform, five samples with false-positive results were detected (overall specificity, 95.7%). Of the 206 samples that contained variola virus DNA ranging in concentrations from 100 fg/μl to 1 ng/μl, 8 samples were considered negative on the Smart Cycler platform and 1 sample was considered negative on the LightCycler platform. Thus, the clinical sensitivities were 96.1% for the Smart Cycler instrument and 99.5% for the LightCycler instrument. The vast majority of these samples were derived from virus-infected cell cultures and variola virus-infected tissues; thus, the DNA material contained both viral DNA and cellular DNA. Of the 43 samples that contained purified variola virus DNA ranging in concentration from 1 fg/μl to 1 ng/μl, the assay correctly detected the virus in all 43 samples on both the Smart Cycler

In Vitro Characterization of a Nineteenth-Century Therapy for Smallpox

OpenAIRE

Arndt, William; Mitnik, Chandra; Denzler, Karen L.; White, Stacy; Waters, Robert; Jacobs, Bertram L.; Rochon, Yvan; Olson, Victoria A.; Damon, Inger K.; Langland, Jeffrey O.

2012-01-01

In the nineteenth century, smallpox ravaged through the United States and Canada. At this time, a botanical preparation, derived from the carnivorous plant Sarracenia purpurea, was proclaimed as being a successful therapy for smallpox infections. The work described characterizes the antipoxvirus activity associated with this botanical extract against vaccinia virus, monkeypox virus and variola virus, the causative agent of smallpox. Our work demonstrates the in vitro characterization of Sarra...

Fate of human viruses in groundwater recharge systems

Energy Technology Data Exchange (ETDEWEB)

Vaughn, J.M.; Landry, E.F.

1980-03-01

The overall objective of this research program was to determine the ability of a well-managed tertiary effluent-recharge system to return virologically acceptable water to the groundwater aquifer. The study assessed the quality of waters renovated by indigenous recharge operations and investigated a number of virus-soil interrelationships. The elucidation of the interactions led to the establishment of basin operating criteria for optimizing virus removal. Raw influents, chlorinated tertiary effluents, and renovated wastewater from the aquifer directly beneath a uniquely designed recharge test basin were assayed on a weekly basis for the presence of human enteroviruses and coliform bacteria. High concentrations of viruses were routinely isolated from influents but were isolated only on four occasions from tertiary-treated sewage effluents. In spite of the high quality effluent being recharged, viruses were isolated from the groundwater observation well, indicating their ability to penetrate the unsaturated zone. Results of poliovirus seeding experiments carried out in the test basin clearly indicated the need to operate recharge basins at low (e.g. 1 cm/h) infiltration rates in areas having soil types similar to those found at the study site. The method selected for reducing the test basin infiltration rate involved clogging the basin surface with settled organic material from highly turbid effluent. Alternative methods for slowing infiltration rates are discussed in the text.

A Multiplex PCR/LDR Assay for the Simultaneous Identification of Category A Infectious Pathogens: Agents of Viral Hemorrhagic Fever and Variola Virus.

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Sanchita Das

Full Text Available CDC designated category A infectious agents pose a major risk to national security and require special action for public health preparedness. They include viruses that cause viral hemorrhagic fever (VHF syndrome as well as variola virus, the agent of smallpox. VHF is characterized by hemorrhage and fever with multi-organ failure leading to high morbidity and mortality. Smallpox, a prior scourge, has been eradicated for decades, making it a particularly serious threat if released nefariously in the essentially non-immune world population. Early detection of the causative agents, and the ability to distinguish them from other pathogens, is essential to contain outbreaks, implement proper control measures, and prevent morbidity and mortality. We have developed a multiplex detection assay that uses several species-specific PCR primers to generate amplicons from multiple pathogens; these are then targeted in a ligase detection reaction (LDR. The resultant fluorescently-labeled ligation products are detected on a universal array enabling simultaneous identification of the pathogens. The assay was evaluated on 32 different isolates associated with VHF (ebolavirus, marburgvirus, Crimean Congo hemorrhagic fever virus, Lassa fever virus, Rift Valley fever virus, Dengue virus, and Yellow fever virus as well as variola virus and vaccinia virus (the agent of smallpox and its vaccine strain, respectively. The assay was able to detect all viruses tested, including 8 sequences representative of different variola virus strains from the CDC repository. It does not cross react with other emerging zoonoses such as monkeypox virus or cowpox virus, or six flaviviruses tested (St. Louis encephalitis virus, Murray Valley encephalitis virus, Powassan virus, Tick-borne encephalitis virus, West Nile virus and Japanese encephalitis virus.

A Multiplex PCR/LDR Assay for the Simultaneous Identification of Category A Infectious Pathogens: Agents of Viral Hemorrhagic Fever and Variola Virus.

Science.gov (United States)

Das, Sanchita; Rundell, Mark S; Mirza, Aashiq H; Pingle, Maneesh R; Shigyo, Kristi; Garrison, Aura R; Paragas, Jason; Smith, Scott K; Olson, Victoria A; Larone, Davise H; Spitzer, Eric D; Barany, Francis; Golightly, Linnie M

2015-01-01

CDC designated category A infectious agents pose a major risk to national security and require special action for public health preparedness. They include viruses that cause viral hemorrhagic fever (VHF) syndrome as well as variola virus, the agent of smallpox. VHF is characterized by hemorrhage and fever with multi-organ failure leading to high morbidity and mortality. Smallpox, a prior scourge, has been eradicated for decades, making it a particularly serious threat if released nefariously in the essentially non-immune world population. Early detection of the causative agents, and the ability to distinguish them from other pathogens, is essential to contain outbreaks, implement proper control measures, and prevent morbidity and mortality. We have developed a multiplex detection assay that uses several species-specific PCR primers to generate amplicons from multiple pathogens; these are then targeted in a ligase detection reaction (LDR). The resultant fluorescently-labeled ligation products are detected on a universal array enabling simultaneous identification of the pathogens. The assay was evaluated on 32 different isolates associated with VHF (ebolavirus, marburgvirus, Crimean Congo hemorrhagic fever virus, Lassa fever virus, Rift Valley fever virus, Dengue virus, and Yellow fever virus) as well as variola virus and vaccinia virus (the agent of smallpox and its vaccine strain, respectively). The assay was able to detect all viruses tested, including 8 sequences representative of different variola virus strains from the CDC repository. It does not cross react with other emerging zoonoses such as monkeypox virus or cowpox virus, or six flaviviruses tested (St. Louis encephalitis virus, Murray Valley encephalitis virus, Powassan virus, Tick-borne encephalitis virus, West Nile virus and Japanese encephalitis virus).

A novel highly reproducible and lethal nonhuman primate model for orthopox virus infection.

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Marit Kramski

Full Text Available The intentional re-introduction of Variola virus (VARV, the agent of smallpox, into the human population is of great concern due its bio-terroristic potential. Moreover, zoonotic infections with Cowpox (CPXV and Monkeypox virus (MPXV cause severe diseases in humans. Smallpox vaccines presently available can have severe adverse effects that are no longer acceptable. The efficacy and safety of new vaccines and antiviral drugs for use in humans can only be demonstrated in animal models. The existing nonhuman primate models, using VARV and MPXV, need very high viral doses that have to be applied intravenously or intratracheally to induce a lethal infection in macaques. To overcome these drawbacks, the infectivity and pathogenicity of a particular CPXV was evaluated in the common marmoset (Callithrix jacchus.A CPXV named calpox virus was isolated from a lethal orthopox virus (OPV outbreak in New World monkeys. We demonstrated that marmosets infected with calpox virus, not only via the intravenous but also the intranasal route, reproducibly develop symptoms resembling smallpox in humans. Infected animals died within 1-3 days after onset of symptoms, even when very low infectious viral doses of 5x10(2 pfu were applied intranasally. Infectious virus was demonstrated in blood, saliva and all organs analyzed.We present the first characterization of a new OPV infection model inducing a disease in common marmosets comparable to smallpox in humans. Intranasal virus inoculation mimicking the natural route of smallpox infection led to reproducible infection. In vivo titration resulted in an MID(50 (minimal monkey infectious dose 50% of 8.3x10(2 pfu of calpox virus which is approximately 10,000-fold lower than MPXV and VARV doses applied in the macaque models. Therefore, the calpox virus/marmoset model is a suitable nonhuman primate model for the validation of vaccines and antiviral drugs. Furthermore, this model can help study mechanisms of OPV pathogenesis.

Identification and nucleotide sequence of the thymidine kinase gene of Shope fibroma virus

International Nuclear Information System (INIS)

Upton, C.; McFadden, G.

1986-01-01

The thymidine kinase (TK) gene of Shope fibroma virus (SFV), a tumorigenic leporipoxvirus, was localized within the viral genome with degenerate oligonucleotide probes. These probes were constructed to two regions of high sequence conservation between the vaccinia virus TK gene and those of several known eucaryotic cellular TK genes, including human, mouse, hamster, and chicken TK genes. The oligonucleotide probes initially localized the SFV TK gene 50 kilobases (kb) from the right terminus of the 160-kb SFV genome within the 9.5-kb BamHI-HindIII fragment E. Fine-mapping analysis indicated that the TK Gene was within a 1.2-kb AvaI-HaeIII fragment, and DNA sequencing of this region revealed an open reading frame capable of encoding a polypeptide of 187 amino acids possessing considerable homology to the TK genes of the vaccinia, variola, and monkeypox orthopoxviruses and also to a variety of cellular TK genes. Homology matrix analysis and homology scores suggest that the SFV TK gene has diverged significantly from its counterpart members in the orthopoxvirus genus. Nevertheless, the presence of conserved upstream open reading frames on the 5' side of all of the poxvirus TK genes indicates a similarity of functional organization between the orthopoxviruses and leporipoxviruses. These data suggest a common ancestral origin for at least some of the unique internal regions of the leporipoxviruses and orthopoxviruses as exemplified by SFV and vaccinia virus, respectively

Andes hantavirus variant in rodents, southern Amazon Basin, Peru.

Science.gov (United States)

Razuri, Hugo; Tokarz, Rafal; Ghersi, Bruno M; Salmon-Mulanovich, Gabriela; Guezala, M Claudia; Albujar, Christian; Mendoza, A Patricia; Tinoco, Yeny O; Cruz, Christopher; Silva, Maria; Vasquez, Alicia; Pacheco, Víctor; Ströher, Ute; Guerrero, Lisa Wiggleton; Cannon, Deborah; Nichol, Stuart T; Hirschberg, David L; Lipkin, W Ian; Bausch, Daniel G; Montgomery, Joel M

2014-02-01

We investigated hantaviruses in rodents in the southern Amazon Basin of Peru and identified an Andes virus variant from Neacomys spinosus mice. This finding extends the known range of this virus in South America and the range of recognized hantaviruses in Peru. Further studies of the epizoology of hantaviruses in this region are warranted.

Andes Hantavirus Variant in Rodents, Southern Amazon Basin, Peru

OpenAIRE

Razuri, Hugo; Tokarz, Rafal; Ghersi, Bruno M.; Salmon-Mulanovich, Gabriela; Guezala, M. Claudia; Albujar, Christian; Mendoza, A. Patricia; Tinoco, Yeny O.; Cruz, Christopher; Silva, Maria; Vasquez, Alicia; Pacheco, Víctor; Ströher, Ute; Guerrero, Lisa Wiggleton; Cannon, Deborah

2014-01-01

We investigated hantaviruses in rodents in the southern Amazon Basin of Peru and identified an Andes virus variant from Neacomys spinosus mice. This finding extends the known range of this virus in South America and the range of recognized hantaviruses in Peru. Further studies of the epizoology of hantaviruses in this region are warranted.

Glycosaminoglycans mediate retention of the poxvirus type I interferon binding protein at the cell surface to locally block interferon antiviral responses

Science.gov (United States)

Montanuy, Imma; Alejo, Ali; Alcami, Antonio

2011-01-01

Eradication of smallpox was accomplished 30 yr ago, but poxviral infections still represent a public health concern due to the potential release of variola virus or the emergence of zoonotic poxviruses, such as monkeypox virus. A critical determinant of poxvirus virulence is the inhibition of interferons (IFNs) by the virus-encoded type I IFN-binding protein (IFNα/βBP). This immunomodulatory protein is secreted and has the unique property of interacting with the cell surface in order to prevent IFN-mediated antiviral responses. However, the mechanism of its attachment to the cell surface remains unknown. Using surface plasmon resonance and cell-binding assays, we report that the IFNα/βBP from vaccinia virus, the smallpox vaccine, interacts with cell surface glycosaminoglycans (GAGs). Analysis of the contribution of different regions of the protein to cell surface binding demonstrated that clusters of basic residues in the first immunoglobulin domain mediate GAG interactions. Furthermore, mutation of the GAG-interaction motifs does not affect its IFN-binding and -blocking capacity. Functional conservation of GAG-binding sites is demonstrated for the IFNα/βBP from variola and monkeypox viruses, extending our understanding of immune modulation by the most virulent human poxviruses. These results are relevant for the design of improved vaccines and intervention strategies.—Montanuy, I., Alejo, A., Alcami, A. Glycosaminoglycans mediate retention of the poxvirus type I interferon binding protein at the cell surface to locally block interferon antiviral responses. PMID:21372110

In vitro characterization of a nineteenth-century therapy for smallpox.

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William Arndt

Full Text Available In the nineteenth century, smallpox ravaged through the United States and Canada. At this time, a botanical preparation, derived from the carnivorous plant Sarracenia purpurea, was proclaimed as being a successful therapy for smallpox infections. The work described characterizes the antipoxvirus activity associated with this botanical extract against vaccinia virus, monkeypox virus and variola virus, the causative agent of smallpox. Our work demonstrates the in vitro characterization of Sarracenia purpurea as the first effective inhibitor of poxvirus replication at the level of early viral transcription. With the renewed threat of poxvirus-related infections, our results indicate Sarracenia purpurea may act as another defensive measure against Orthopoxvirus infections.

In vitro characterization of a nineteenth-century therapy for smallpox.

Science.gov (United States)

Arndt, William; Mitnik, Chandra; Denzler, Karen L; White, Stacy; Waters, Robert; Jacobs, Bertram L; Rochon, Yvan; Olson, Victoria A; Damon, Inger K; Langland, Jeffrey O

2012-01-01

In the nineteenth century, smallpox ravaged through the United States and Canada. At this time, a botanical preparation, derived from the carnivorous plant Sarracenia purpurea, was proclaimed as being a successful therapy for smallpox infections. The work described characterizes the antipoxvirus activity associated with this botanical extract against vaccinia virus, monkeypox virus and variola virus, the causative agent of smallpox. Our work demonstrates the in vitro characterization of Sarracenia purpurea as the first effective inhibitor of poxvirus replication at the level of early viral transcription. With the renewed threat of poxvirus-related infections, our results indicate Sarracenia purpurea may act as another defensive measure against Orthopoxvirus infections.

Validation of a Pan-Orthopox Real-Time PCR Assay for the Detection and Quantification of Viral Genomes from Nonhuman Primate Blood

Science.gov (United States)

2017-06-19

Validation of a pan-orthopox real-time PCR assay for the detection and quantification of viral genomes from nonhuman primate blood. Eric...medical countermeasures by the U.S. FDA, the assay was designed to quantitate poxvirus genomic DNA in a nonhuman primate (cynomolgus macaque) blood...monkeypox virus into nonhuman primate blood, we chose to use the HA standard after considering the potential biological safety and logistical issues with

[Monkey-pox, a model of emergent then reemergent disease].

Science.gov (United States)

Georges, A J; Matton, T; Courbot-Georges, M C

2004-01-01

The recent emergence of monkey pox in the United States of America highlights the problem (known for other infectious agents) of dissemination of pathogens outside their endemic area, and of subsequent global threats of variable gravity according to agents. It is a real emergency since monkey pox had been confined to Africa for several decades, where small epidemics occurred from time to time, monkey pox is a "miniature smallpox" which, in Africa, evolves on an endemic (zoonotic) mode with, as reservoirs, several species of wild rodents (mainly squirrels) and some monkey species. It can be accidentally transmitted to man then develops as epidemics, sometimes leading to death. The virus was imported in 2003 in the United States of America, via Gambia rats and wild squirrels (all African species), and infected prairie dogs (which are now in fashion as pets), then crossed the species barrier to man. In the United States of America, screening campaigns, epidemiological investigations, and subsequent treatments led to a rapid control of the epidemic, which is a model of emergent disease for this country. Therapeutic and preventive measures directly applicable to monkey pox are discussed. They can also be applied against other pox virus infections (including smallpox). The risk of criminal introduction of pox viruses is discussed since it is, more than ever, a real worldwide threat.

Characterization of sour cherry isolates of plum pox virus from the Volga Basin in Russia reveals a new cherry strain of the virus.

Science.gov (United States)

Glasa, Miroslav; Prikhodko, Yuri; Predajňa, Lukáš; Nagyová, Alžbeta; Shneyder, Yuri; Zhivaeva, Tatiana; Subr, Zdeno; Cambra, Mariano; Candresse, Thierry

2013-09-01

Plum pox virus (PPV) is the causal agent of sharka, the most detrimental virus disease of stone fruit trees worldwide. PPV isolates have been assigned into seven distinct strains, of which PPV-C regroups the genetically distinct isolates detected in several European countries on cherry hosts. Here, three complete and several partial genomic sequences of PPV isolates from sour cherry trees in the Volga River basin of Russia have been determined. The comparison of complete genome sequences has shown that the nucleotide identity values with other PPV isolates reached only 77.5 to 83.5%. Phylogenetic analyses clearly assigned the RU-17sc, RU-18sc, and RU-30sc isolates from cherry to a distinct cluster, most closely related to PPV-C and, to a lesser extent, PPV-W. Based on their natural infection of sour cherry trees and genomic characterization, the PPV isolates reported here represent a new strain of PPV, for which the name PPV-CR (Cherry Russia) is proposed. The unique amino acids conserved among PPV-CR and PPV-C cherry-infecting isolates (75 in total) are mostly distributed within the central part of P1, NIa, and the N terminus of the coat protein (CP), making them potential candidates for genetic determinants of the ability to infect cherry species or of adaptation to these hosts. The variability observed within 14 PPV-CR isolates analyzed in this study (0 to 2.6% nucleotide divergence in partial CP sequences) and the identification of these isolates in different localities and cultivation conditions suggest the efficient establishment and competitiveness of the PPV-CR in the environment. A specific primer pair has been developed, allowing the specific reverse-transcription polymerase chain reaction detection of PPV-CR isolates.

Virus movement in soil during saturated and unsaturated flow.

Science.gov (United States)

Lance, J C; Gerba, C P

1984-02-01

Virus movement in soil during saturated and unsaturated flow was compared by adding poliovirus to sewage water and applying the water at different rates to a 250-cm-long soil column equipped with ceramic samplers at different depths. Movement of viruses during unsaturated flow of sewage through soil columns was much less than during saturated flow. Viruses did not move below the 40-cm level when sewage water was applied at less than the maximum infiltration rate; virus penetration in columns flooded with sewage was at least 160 cm. Therefore, virus movement in soils irrigated with sewage should be less than in flooded groundwater recharge basins or in saturated soil columns. Management of land treatment systems to provide unsaturated flow through the soil should minimize the depth of virus penetration. Differences in virus movement during saturated and unsaturated flow must be considered in the development of any model used to simulate virus movement in soils.

Buccal viral DNA as a trigger for brincidofovir therapy in the mousepox model of smallpox.

Science.gov (United States)

Crump, Ryan; Korom, Maria; Buller, R Mark; Parker, Scott

2017-03-01

Orthopoxviruses continue to pose a significant threat to the population as potential agents of bioterrorism. An intentional release of natural or engineered variola virus (VARV) or monkeypox viruses would cause mortality and morbidity in the target population. To address this, antivirals have been developed and evaluated in animal models of smallpox and monkeypox. One such antiviral, brincidofovir (BCV, previously CMX001), has demonstrated high levels of efficacy against orthopoxviruses in animal models and is currently under clinical evaluation for prevention and treatment of diseases caused by cytomegaloviruses and adenoviruses. In this study we use the mousepox model of smallpox to evaluate the relationship between the magnitude of the infectious virus dose and an efficacious BCV therapy outcome when treatment is initiated concomitant with detection of ectromelia virus viral DNA (vDNA) in mouse buccal swabs. We found that vDNA could be detected in buccal swabs of some, but not all infected mice over a range of challenge doses by day 3 or 4 postexposure, when initiation of BCV treatment was efficacious, suggesting that detection of vDNA in buccal swabs could be used as a trigger to initiate BCV treatment of an entire potentially exposed population. However, buccal swabs of some mice did not become positive until 5 days postexposure, when initiation of BCV therapy failed to protect mice that received high doses of virus. And finally, the data suggest that the therapeutic window for efficacious BCV treatment decreases as the virus infectious dose increases. Extrapolating these findings to VARV, the data suggest that treatment should be initiated as soon as possible after exposure and not rely on a diagnostic tool such as the measurement of vDNA in buccal cavity swabs; however, consideration should be given to the fact that the behavior/disease-course of VARV in humans is different from that of ectromelia virus in the mouse. Copyright © 2016 Elsevier B.V. All

Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus

Science.gov (United States)

Black, Allison; Breyta, Rachel; Bedford, Trevor; Kurath, Gael

2016-01-01

Infectious hematopoietic necrosis virus (IHNV) is a negative-sense RNA virus that infects wild and cultured salmonids throughout the Pacific Coastal United States and Canada, from California to Alaska. Although infection of adult fish is usually asymptomatic, juvenile infections can result in high mortality events that impact salmon hatchery programs and commercial aquaculture. We used epidemiological case data and genetic sequence data from a 303 nt portion of the viral glycoprotein gene to study the evolutionary dynamics of U genogroup IHNV in the Pacific Northwestern United States from 1971 to 2013. We identified 114 unique genotypes among 1,219 U genogroup IHNV isolates representing 619 virus detection events. We found evidence for two previously unidentified, broad subgroups within the U genogroup, which we designated ‘UC’ and ‘UP’. Epidemiologic records indicated that UP viruses were detected more frequently in sockeye salmon (Oncorhynchus nerka) and in coastal waters of Washington and Oregon, whereas UC viruses were detected primarily in Chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) in the Columbia River Basin, which is a large, complex watershed extending throughout much of interior Washington, Oregon, and Idaho. These findings were supported by phylogenetic analysis and by FST. Ancestral state reconstruction indicated that early UC viruses in the Columbia River Basin initially infected sockeye salmon but then emerged via host shifts into Chinook salmon and steelhead trout sometime during the 1980s. We postulate that the development of these subgroups within U genogroup was driven by selection pressure for viral adaptation to Chinook salmon and steelhead trout within the Columbia River Basin.

SEROLOGICAL DETECTION OF HEPATITIS A VIRUS IN FREE-RANGING NEOTROPICAL PRIMATES (Sapajus spp., Alouatta caraya) FROM THE PARANÁ RIVER BASIN, BRAZIL.

Science.gov (United States)

Svoboda, Walfrido Kühl; Soares, Manoel do Carmo Pereira; Alves, Max Moreira; Rocha, Tatiana Carneiro; Gomes, Eliane Carneiro; Menoncin, Fabiana; Batista, Paulo Mira; Silva, Lineu Roberto da; Headley, Selwyn Arlington; Hilst, Carmen Lúcia Scortecci; Aguiar, Lucas M; Ludwig, Gabriela; Passos, Fernando de Camargo; Souza, Júlio Cesar de; Navarro, Italmar Teodorico

2016-01-01

Nonhuman primates are considered as the natural hosts of Hepatitis A virus (HAV), as well as other pathogens, and can serve as natural sentinels to investigate epizootics and endemic diseases that are of public health importance. During this study, blood samples were collected from 112 Neotropical primates (NTPs) (Sapajus nigritus and S. cay, n = 75; Alouatta caraya, n = 37) trap-captured at the Paraná River basin, Brazil, located between the States of Paraná and Mato Grosso do Sul. Anti-HAV IgG antibodies were detected in 4.5% (5/112) of NTPs, specifically in 6.7% (5/75) of Sapajus spp. and 0% (0/37) of A. caraya. In addition, all samples were negative for the presence of IgM anti-HAV antibodies. These results suggest that free-ranging NTPs were exposed to HAV within the geographical regions evaluated.

Low prevalence of hepatitis B virus, hepatitis D virus and hepatitis C virus among patients with human immunodeficiency virus or acquired immunodeficiency syndrome in the Brazilian Amazon basin Baixa prevalência do vírus da hepatite B, vírus da hepatite D e vírus da hepatite C entre pacientes com o vírus da imunodeficiência humana ou síndrome da imunodeficiência adquirida na Amazônia Brasileira

Directory of Open Access Journals (Sweden)

Wornei Silva Miranda Braga

2006-12-01

Full Text Available Comorbidities in human immunodeficiency virus infection are of great interest due to their association with unfavorable outcomes and failure of antiretroviral therapy. This study evaluated the prevalence of coinfection by human immunodeficiency virus and viral hepatitis in an endemic area for hepatitis B in the Western Amazon basin. Serological markers for hepatitis B virus, hepatitis C virus and hepatitis D virus were tested in a consecutive sample of all patients referred for treatment of human immunodeficiency virus or acquired immunodeficiency syndrome. The variables sex, age, origin and exposure category were obtained from medical records and from the sexually transmitted diseases and acquired immunodeficiency syndrome surveillance database. Among 704 subjects, the prevalence of chronic hepatitis B carriage was 6.4% and past infection 40.2%. The presence of hepatitis B was associated with birth in hyperendemic areas of the Amazon basin, male sex and illegal drug use. The overall prevalence of hepatitis C was 5% and was associated with illegal drug use. The prevalence of hepatitis B and C among human immunodeficiency virus or acquired immunodeficiency syndrome patients in the Western Amazon basin was lower than seen elsewhere and is probably associated with the local epidemiology of these viruses and the degree of overlap of their shared risk factors. An opportunity presents itself to evaluate the prevention of hepatitis C through harm reduction policies and hepatitis B through vaccination programs among human immunodeficiency virus or acquired immunodeficiency syndrome patients.Co-morbidades na infecção pelo vírus da imunodeficiência humana são de grande interesse devido à associação com desfechos desfavoráveis e falhas na terapia anti-retroviral. Este estudo avalia a prevalência de co-infecção entre o vírus da imunodeficiência humana e hepatites virais, em uma área endêmica de hepatite B, na Amazônia Ocidental. Marcadores

Serological evidence for Saint Louis encephalitis virus in free-ranging New World monkeys and horses within the upper Paraná River basin region, Southern Brazil

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Walfrido Kühl Svoboda

2014-06-01

Full Text Available Introduction Saint Louis encephalitis virus (SLEV primarily occurs in the Americas and produces disease predominantly in humans. This study investigated the serological presence of SLEV in nonhuman primates and horses from southern Brazil. Methods From June 2004 to December 2005, sera from 133 monkeys (Alouatta caraya, n=43; Sapajus nigritus, n=64; Sapajus cay, n=26 trap-captured at the Paraná River basin region and 23 blood samples from farm horses were obtained and used for the serological detection of a panel of 19 arboviruses. All samples were analyzed in a hemagglutination inhibition (HI assay; positive monkey samples were confirmed in a mouse neutralization test (MNT. Additionally, all blood samples were inoculated into C6/36 cell culture for viral isolation. Results Positive seroreactivity was only observed for SLEV. A prevalence of SLEV antibodies in sera was detected in Alouatta caraya (11.6%; 5/43, Sapajus nigritus (12.5%; 8/64, and S. cay (30.8%; 8/26 monkeys with the HI assay. Of the monkeys, 2.3% (1/42 of A. caraya, 6.3% 94/64 of S. nigritus, and 15.4% (4/26 of S. cay were positive for SLEV in the MNT. Additionally, SLEV antibodies were detected by HI in 39.1% (9/23 of the horses evaluated in this study. Arboviruses were not isolated from any blood sample. Conclusions These results confirmed the presence of SLEV in nonhuman primates and horses from southern Brazil. These findings most likely represent the first detection of this virus in nonhuman primates beyond the Amazon region. The detection of SLEV in animals within a geographical region distant from the Amazon basin suggests that there may be widespread and undiagnosed dissemination of this disease in Brazil.

Evaluation of disease and viral biomarkers as triggers for therapeutic intervention in respiratory mousepox - an animal model of smallpox.

Science.gov (United States)

Parker, Scott; Chen, Nanhai G; Foster, Scott; Hartzler, Hollyce; Hembrador, Ed; Hruby, Dennis; Jordan, Robert; Lanier, Randall; Painter, George; Painter, Wesley; Sagartz, John E; Schriewer, Jill; Mark Buller, R

2012-04-01

The human population is currently faced with the potential use of natural or recombinant variola and monkeypox viruses as biological weapons. Furthermore, the emergence of human monkeypox in Africa and its expanding environs poses a significant natural threat. Such occurrences would require therapeutic and prophylactic intervention with antivirals to minimize morbidity and mortality of exposed populations. Two orally-bioavailable antivirals are currently in clinical trials; namely CMX001, an ether-lipid analog of cidofovir with activity at the DNA replication stage and ST-246, a novel viral egress inhibitor. Both of these drugs have previously been evaluated in the ectromelia/mousepox system; however, the trigger for intervention was not linked to a disease biomarker or a specific marker of virus replication. In this study we used lethal, intranasal, ectromelia virus infections of C57BL/6 and hairless SKH1 mice to model human disease and evaluate exanthematous rash (rash) as an indicator to initiate antiviral treatment. We show that significant protection can be provided to C57BL/6 mice by CMX001 or ST-246 when therapy is initiated on day 6 post infection or earlier. We also show that significant protection can be provided to SKH1 mice treated with CMX001 at day 3 post infection or earlier, but this is four or more days before detection of rash (ST-246 not tested). Although in this model rash could not be used as a treatment trigger, viral DNA was detected in blood by day 4 post infection and in the oropharyngeal secretions (saliva) by day 2-3 post infection - thus providing robust and specific markers of virus replication for therapy initiation. These findings are discussed in the context of current respiratory challenge animal models in use for the evaluation of poxvirus antivirals. Copyright © 2012 Elsevier B.V. All rights reserved.

Itaya virus, a Novel Orthobunyavirus Associated with Human Febrile Illness, Peru

Science.gov (United States)

Hontz, Robert D.; Guevara, Carolina; Halsey, Eric S.; Silvas, Jesus; Santiago, Felix W.; Widen, Steven G.; Wood, Thomas G.; Casanova, Wilma; Vasilakis, Nikos; Watts, Douglas M.; Kochel, Tadeusz J.; Ebihara, Hideki

2015-01-01

Our genetic analyses of uncharacterized bunyaviruses isolated in Peru identified a possible reassortant virus containing small and large gene segment sequences closely related to the Caraparu virus and a medium gene segment sequence potentially derived from an unidentified group C orthobunyavirus. Neutralization tests confirmed serologic distinction among the newly identified virus and the prototype and Caraparu strains. This virus, named Itaya, was isolated in 1999 and 2006 from febrile patients in the cities of Iquitos and Yurimaguas in Peru. The geographic distance between the 2 cases suggests that the Itaya virus could be widely distributed throughout the Amazon basin in northeastern Peru. Identification of a new Orthobunyavirus species that causes febrile disease in humans reinforces the need to expand viral disease surveillance in tropical regions of South America. PMID:25898901

Itaya virus, a Novel Orthobunyavirus Associated with Human Febrile Illness, Peru.

Science.gov (United States)

Hontz, Robert D; Guevara, Carolina; Halsey, Eric S; Silvas, Jesus; Santiago, Felix W; Widen, Steven G; Wood, Thomas G; Casanova, Wilma; Vasilakis, Nikos; Watts, Douglas M; Kochel, Tadeusz J; Ebihara, Hideki; Aguilar, Patricia V

2015-05-01

Our genetic analyses of uncharacterized bunyaviruses isolated in Peru identified a possible reassortant virus containing small and large gene segment sequences closely related to the Caraparu virus and a medium gene segment sequence potentially derived from an unidentified group C orthobunyavirus. Neutralization tests confirmed serologic distinction among the newly identified virus and the prototype and Caraparu strains. This virus, named Itaya, was isolated in 1999 and 2006 from febrile patients in the cities of Iquitos and Yurimaguas in Peru. The geographic distance between the 2 cases suggests that the Itaya virus could be widely distributed throughout the Amazon basin in northeastern Peru. Identification of a new Orthobunyavirus species that causes febrile disease in humans reinforces the need to expand viral disease surveillance in tropical regions of South America.

Cidofovir Activity against Poxvirus Infections

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Robert Snoeck

2010-12-01

Full Text Available Cidofovir [(S-1-(3-hydroxy-2-phosphonylmethoxypropylcytosine, HPMPC] is an acyclic nucleoside analog approved since 1996 for clinical use in the treatment of cytomegalovirus (CMV retinitis in AIDS patients. Cidofovir (CDV has broad-spectrum activity against DNA viruses, including herpes-, adeno-, polyoma-, papilloma- and poxviruses. Among poxviruses, cidofovir has shown in vitro activity against orthopox [vaccinia, variola (smallpox, cowpox, monkeypox, camelpox, ectromelia], molluscipox [molluscum contagiosum] and parapox [orf] viruses. The anti-poxvirus activity of cidofovir in vivo has been shown in different models of infection when the compound was administered either intraperitoneal, intranasal (aerosolized or topically. In humans, cidofovir has been successfully used for the treatment of recalcitrant molluscum contagiosum virus and orf virus in immunocompromised patients. CDV remains a reference compound against poxviruses and holds potential for the therapy and short-term prophylaxis of not only orthopox- but also parapox- and molluscipoxvirus infections.

Tomato Leaf Curl New Delhi Virus: An Emerging Virus Complex Threatening Vegetable and Fiber Crops

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Enrique Moriones

2017-09-01

Full Text Available The tomato leaf curl New Delhi virus (ToLCNDV (genus Begomovirus, family Geminiviridae represents an important constraint to tomato production, as it causes the most predominant and economically important disease affecting tomato in the Indian sub-continent. However, in recent years, ToLCNDV has been fast extending its host range and spreading to new geographical regions, including the Middle East and the western Mediterranean Basin. Extensive research on the genome structure, protein functions, molecular biology, and plant–virus interactions of ToLCNDV has been conducted in the last decade. Special emphasis has been given to gene silencing suppression ability in order to counteract host plant defense responses. The importance of the interaction with DNA alphasatellites and betasatellites in the biology of the virus has been demonstrated. ToLCNDV genetic variability has been analyzed, providing new insights into the taxonomy, host adaptation, and evolution of this virus. Recombination and pseudorecombination have been shown as motors of diversification and adaptive evolution. Important progress has also been made in control strategies to reduce disease damage. This review highlights these various achievements in the context of the previous knowledge of begomoviruses and their interactions with plants.

Non-Human Primate Models of Orthopoxvirus Infections

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Anne Schmitt

2014-06-01

Full Text Available Smallpox, one of the most destructive diseases, has been successfully eradicated through a worldwide vaccination campaign. Since immunization programs have been stopped, the number of people with vaccinia virus induced immunity is declining. This leads to an increase in orthopoxvirus (OPXV infections in humans, as well as in animals. Additionally, potential abuse of Variola virus (VARV, the causative agent of smallpox, or monkeypox virus, as agents of bioterrorism, has renewed interest in development of antiviral therapeutics and of safer vaccines. Due to its high risk potential, research with VARV is restricted to two laboratories worldwide. Therefore, numerous animal models of other OPXV infections have been developed in the last decades. Non-human primates are especially suitable due to their close relationship to humans. This article provides a review about on non-human primate models of orthopoxvirus infections.

West Nile virus ecology in a tropical ecosystem in Guatemala.

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Morales-Betoulle, Maria E; Komar, Nicholas; Panella, Nicholas A; Alvarez, Danilo; López, María R; Betoulle, Jean-Luc; Sosa, Silvia M; Müller, María L; Kilpatrick, A Marm; Lanciotti, Robert S; Johnson, Barbara W; Powers, Ann M; Cordón-Rosales, Celia

2013-01-01

West Nile virus ecology has yet to be rigorously investigated in the Caribbean Basin. We identified a transmission focus in Puerto Barrios, Guatemala, and established systematic monitoring of avian abundance and infection, seroconversions in domestic poultry, and viral infections in mosquitoes. West Nile virus transmission was detected annually between May and October from 2005 to 2008. High temperature and low rainfall enhanced the probability of chicken seroconversions, which occurred in both urban and rural sites. West Nile virus was isolated from Culex quinquefasciatus and to a lesser extent, from Culex mollis/Culex inflictus, but not from the most abundant Culex mosquito, Culex nigripalpus. A calculation that combined avian abundance, seroprevalence, and vertebrate reservoir competence suggested that great-tailed grackle (Quiscalus mexicanus) is the major amplifying host in this ecosystem. West Nile virus transmission reached moderate levels in sentinel chickens during 2007, but less than that observed during outbreaks of human disease attributed to West Nile virus in the United States.

Suppression of Poxvirus Replication by Resveratrol.

Science.gov (United States)

Cao, Shuai; Realegeno, Susan; Pant, Anil; Satheshkumar, Panayampalli S; Yang, Zhilong

2017-01-01

Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV), the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

Suppression of Poxvirus Replication by Resveratrol

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Shuai Cao

2017-11-01

Full Text Available Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV, the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

Orthopoxvirus species and strain differences in cell entry

Energy Technology Data Exchange (ETDEWEB)

Bengali, Zain; Satheshkumar, P.S. [Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-3210 (United States); Moss, Bernard, E-mail: bmoss@nih.gov [Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-3210 (United States)

2012-11-25

Vaccinia virus (VACV) enters cells by a low pH endosomal route or by direct fusion with the plasma membrane. We previously found differences in entry properties of several VACV strains: entry of WR was enhanced by low pH, reduced by bafilomycin A1 and relatively unaffected by heparin, whereas entry of IHD-J, Copenhagen and Elstree were oppositely affected. Since binding and entry modes may have been selected by specific conditions of in vitro propagation, we now examined the properties of three distinct, recently isolated cowpox viruses and a monkeypox virus as well as additional VACV and cowpox virus strains. The recent isolates were more similar to WR than to other VACV strains, underscoring the biological importance of endosomal entry by orthopoxviruses. Sequence comparisons, gene deletions and gene swapping experiments indicated that viral determinants, other than or in addition to the A26 and A25 'fusion-suppressor' proteins, impact entry properties.

An epidemiological model of virus transmission in salmonid fishes of the Columbia River Basin

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Ferguson, Paige F. B.; Breyta, Rachel; Brito, Ilana L.; Kurath, Gael; LaDeau, Shannon L.

2018-01-01

We have developed a dynamic epidemiological model informed by records of viral presence and genotypes to evaluate potential transmission routes maintaining a viral pathogen in economically and culturally important anadromous fish populations. In the Columbia River Basin, infectious hematopoietic necrosis virus (IHNV) causes severe disease, predominantly in juvenile steelhead trout (Oncorhynchus mykiss) and less frequently in Chinook salmon (O. tshawytscha). Mortality events following IHNV infection can be devastating for individual hatchery programs. Despite reports of high local mortality and extensive surveillance efforts, there are questions about how viral transmission is maintained. Modeling this system offers important insights into disease transmission in natural aquatic systems, as well as about the data requirements for generating accurate estimates about transmission routes and infection probabilities. We simulated six scenarios in which testing rates and the relative importance of different transmission routes varied. The simulations demonstrated that the model accurately identified routes of transmission and inferred infection probabilities accurately when there was testing of all cohort-sites. When testing records were incomplete, the model accurately inferred which transmission routes exposed particular cohort-sites but generated biased infection probabilities given exposure. After validating the model and generating guidelines for result interpretation, we applied the model to data from 14 annual cohorts (2000–2013) at 24 focal sites in a sub-region of the Columbia River Basin, the lower Columbia River (LCR), to quantify the relative importance of potential transmission routes in this focal sub-region. We demonstrate that exposure to IHNV via the return migration of adult fish is an important route for maintaining IHNV in the LCR sub-region, and the probability of infection following this exposure was relatively high at 0.16. Although only 1% of

The Ogaden Basin, Ethiopia: an underexplored sedimentary basin

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Teitz, H.H.

1991-01-01

A brief article examines the Ogaden Basin in Ethiopia in terms of basin origin, basin fill and the hydrocarbon exploration history and results. The natural gas find in pre-Jurassic sandstones, which appears to contain substantial reserves, justifies continuing investigations in this largely underexplored basin. (UK).

Susceptibility of the wild-derived inbred CAST/Ei mouse to infection by orthopoxviruses analyzed by live bioluminescence imaging

International Nuclear Information System (INIS)

Americo, Jeffrey L.; Sood, Cindy L.; Cotter, Catherine A.; Vogel, Jodi L.; Kristie, Thomas M.; Moss, Bernard; Earl, Patricia L.

2014-01-01

Classical inbred mice are extensively used for virus research. However, we recently found that some wild-derived inbred mouse strains are more susceptible than classical strains to monkeypox virus. Experiments described here indicated that the 50% lethal dose of vaccinia virus (VACV) and cowpox virus (CPXV) were two logs lower in wild-derived inbred CAST/Ei mice than classical inbred BALB/c mice, whereas there was little difference in the susceptibility of the mouse strains to herpes simplex virus. Live bioluminescence imaging was used to follow spread of pathogenic and attenuated VACV strains and CPXV virus from nasal passages to organs in the chest and abdomen of CAST/Ei mice. Luminescence increased first in the head and then simultaneously in the chest and abdomen in a dose-dependent manner. The spreading kinetics was more rapid with VACV than CPXV although the peak photon flux was similar. These data suggest advantages of CAST/Ei mice for orthopoxvirus studies. - Highlights: • Wild-derived inbred CAST/Ei mice are susceptible to vaccinia virus and cowpox virus. • Morbidity and mortality from orthopoxviruses are greater in CAST/Ei than BALB/c mice. • Morbidity and mortality from herpes simplex virus type 1 are similar in both mice. • Imaging shows virus spread from nose to lungs, abdominal organs and brain. • Vaccinia virus spreads more rapidly than cowpox virus

Susceptibility of the wild-derived inbred CAST/Ei mouse to infection by orthopoxviruses analyzed by live bioluminescence imaging

Energy Technology Data Exchange (ETDEWEB)

Americo, Jeffrey L.; Sood, Cindy L.; Cotter, Catherine A.; Vogel, Jodi L.; Kristie, Thomas M.; Moss, Bernard, E-mail: bmoss@nih.gov; Earl, Patricia L., E-mail: pearl@nih.gov

2014-01-20

Classical inbred mice are extensively used for virus research. However, we recently found that some wild-derived inbred mouse strains are more susceptible than classical strains to monkeypox virus. Experiments described here indicated that the 50% lethal dose of vaccinia virus (VACV) and cowpox virus (CPXV) were two logs lower in wild-derived inbred CAST/Ei mice than classical inbred BALB/c mice, whereas there was little difference in the susceptibility of the mouse strains to herpes simplex virus. Live bioluminescence imaging was used to follow spread of pathogenic and attenuated VACV strains and CPXV virus from nasal passages to organs in the chest and abdomen of CAST/Ei mice. Luminescence increased first in the head and then simultaneously in the chest and abdomen in a dose-dependent manner. The spreading kinetics was more rapid with VACV than CPXV although the peak photon flux was similar. These data suggest advantages of CAST/Ei mice for orthopoxvirus studies. - Highlights: • Wild-derived inbred CAST/Ei mice are susceptible to vaccinia virus and cowpox virus. • Morbidity and mortality from orthopoxviruses are greater in CAST/Ei than BALB/c mice. • Morbidity and mortality from herpes simplex virus type 1 are similar in both mice. • Imaging shows virus spread from nose to lungs, abdominal organs and brain. • Vaccinia virus spreads more rapidly than cowpox virus.

Epidemiology of West Nile in Europe and in the Mediterranean Basin

OpenAIRE

Calistri, Paolo; Giovannini, Armando; Hubalek, Zdenek; Ionescu, Aurelia; Monaco, Federica; Savini, Giovanni; Lelli, Rossella

2010-01-01

In the last 30 years several cases of West Nile (WN) virus infection were reported in horses and humans in Europe and in the Mediterranean Basin. Most of them were determined by strains of the Lineage 1 included in the European Mediterranean/Kenyan cluster. Strains of this cluster are characterised by a moderate pathogenicity for horses and humans and limited or no pathogenicity for birds. In recent years, however, WN cases determined by strains grouped in the Israeli/American cluster of Line...

Epidemiology of west nile in europe and in the mediterranean basin.

Science.gov (United States)

Calistri, Paolo; Giovannini, Armando; Hubalek, Zdenek; Ionescu, Aurelia; Monaco, Federica; Savini, Giovanni; Lelli, Rossella

2010-04-22

In the last 30 years several cases of West Nile (WN) virus infection were reported in horses and humans in Europe and in the Mediterranean Basin. Most of them were determined by strains of the Lineage 1 included in the European Mediterranean/Kenyan cluster. Strains of this cluster are characterised by a moderate pathogenicity for horses and humans and limited or no pathogenicity for birds. In recent years, however, WN cases determined by strains grouped in the Israeli/American cluster of Lineage 1 or in the lineage 2 have been reported in Hungary and Austria. The role of migrating birds in introducing new viruses to Europe has been often demonstrated. The migratory birds, which may be infected in their African wintering places, carry the virus northward to European sites during spring migrations. In the past, the virus introduction determined occasional cases of WN. In the recent years, new epidemiological scenarios are developing. In few occasions it has been evidenced the capability of WNV strains of overwintering by using local birds and mosquitoes. Species of Culex amongst mosquitoes and magpies (Pica pica), carrion crows (Corvus corone) and rock pigeons (Columba livia) amongst resident birds are the most probable species involved in this hypothetical WND endemic cycle.

Integrated Hydrographical Basin Management. Study Case - Crasna River Basin

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Visescu, Mircea; Beilicci, Erika; Beilicci, Robert

2017-10-01

Hydrographical basins are important from hydrological, economic and ecological points of view. They receive and channel the runoff from rainfall and snowmelt which, when adequate managed, can provide fresh water necessary for water supply, irrigation, food industry, animal husbandry, hydrotechnical arrangements and recreation. Hydrographical basin planning and management follows the efficient use of available water resources in order to satisfy environmental, economic and social necessities and constraints. This can be facilitated by a decision support system that links hydrological, meteorological, engineering, water quality, agriculture, environmental, and other information in an integrated framework. In the last few decades different modelling tools for resolving problems regarding water quantity and quality were developed, respectively water resources management. Watershed models have been developed to the understanding of water cycle and pollution dynamics, and used to evaluate the impacts of hydrotechnical arrangements and land use management options on water quantity, quality, mitigation measures and possible global changes. Models have been used for planning monitoring network and to develop plans for intervention in case of hydrological disasters: floods, flash floods, drought and pollution. MIKE HYDRO Basin is a multi-purpose, map-centric decision support tool for integrated hydrographical basin analysis, planning and management. MIKE HYDRO Basin is designed for analyzing water sharing issues at international, national and local hydrographical basin level. MIKE HYDRO Basin uses a simplified mathematical representation of the hydrographical basin including the configuration of river and reservoir systems, catchment hydrology and existing and potential water user schemes with their various demands including a rigorous irrigation scheme module. This paper analyzes the importance and principles of integrated hydrographical basin management and develop a case

Data report: an assessment of the occurrence of human viruses in Long Island aquatic systems

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Vaughn, J.M.; Landry, E.F.

1977-12-01

A virus survey was conducted in Nassau and Suffolk Counties under the auspices of the federally-funded ''208'' program from June 1976 to June 1977. The survey involved the concentration, enumeration, and identification of human enteroviruses from selected aquatic systems on Long Island including embayments, lakes, creeks, public drinking water supplies, groundwater influenced by wastewater recharge, sanitary landfills, and stormwater recharge basins; and the effluents from secondary and tertiary sewage treatment plants. Enteroviruses were isolated from all systems studied except the public water supply wells. As expected, viruses were most often encountered in the chlorinated effluents of sewage treatment plants. On two separate occasions, wild type Poliovirus was isolated from one of these plants. The limited sampling conducted at each site (1 per month) obviated any extensive interpretation of the data for the purpose of identifying the precise hazard posed by enteric viruses in Long Island waters. Among tentative conclusions were: support for the continued study of recharge of groundwater aquifers via the application of properly treated domestic wastewater to recharge basins; caution regarding placement of private septic systems in saturated zones near surface water bodies; the discharge of sewage effluents into embayments; and the identification of those areas requiring further virological study.

Systemically administered DNA and fowlpox recombinants expressing four vaccinia virus genes although immunogenic do not protect mice against the highly pathogenic IHD-J vaccinia strain.

Science.gov (United States)

Bissa, Massimiliano; Pacchioni, Sole Maria; Zanotto, Carlo; De Giuli Morghen, Carlo; Illiano, Elena; Granucci, Francesca; Zanoni, Ivan; Broggi, Achille; Radaelli, Antonia

2013-12-26

The first-generation smallpox vaccine was based on live vaccinia virus (VV) and it successfully eradicated the disease worldwide. Therefore, it was not administered any more after 1980, as smallpox no longer existed as a natural infection. However, emerging threats by terrorist organisations has prompted new programmes for second-generation vaccine development based on attenuated VV strains, which have been shown to cause rare but serious adverse events in immunocompromised patients. Considering the closely related animal poxviruses that might also be used as bioweapons, and the increasing number of unvaccinated young people and AIDS-affected immunocompromised subjects, a safer and more effective smallpox vaccine is still required. New avipoxvirus-based vectors should improve the safety of conventional vaccines, and protect from newly emerging zoonotic orthopoxvirus diseases and from the threat of deliberate release of variola or monkeypox virus in a bioterrorist attack. In this study, DNA and fowlpox recombinants expressing the L1R, A27L, A33R and B5R genes were constructed and evaluated in a pre-clinical trial in mouse, following six prime/boost immunisation regimens, to compare their immunogenicity and protective efficacy against a challenge with the lethal VV IHD-J strain. Although higher numbers of VV-specific IFNγ-producing T lymphocytes were observed in the protected mice, the cytotoxic T-lymphocyte response and the presence of neutralising antibodies did not always correlate with protection. In spite of previous successful results in mice, rabbits and monkeys, where SIV/HIV transgenes were expressed by the fowlpox vector, the immune response elicited by these recombinants was low, and most of the mice were not protected. Copyright © 2013 Elsevier B.V. All rights reserved.

PCR strategy for identification and differentiation of small pox and other orthopoxviruses.

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Ropp, S L; Jin, Q; Knight, J C; Massung, R F; Esposito, J J

1995-08-01

Rapid identification and differentiation of orthopoxviruses by PCR were achieved with primers based on genome sequences encoding the hemagglutinin (HA) protein, an infected-cell membrane antigen that distinguishes orthopoxviruses from other poxvirus genera. The initial identification step used a primer pair of consensus sequences for amplifying an HA DNA fragment from the three known North American orthopoxviruses (raccoonpox, skunkpox, and volepox viruses), and a second pair for amplifying virtually the entire HA open reading frame of the Eurasian-African orthopoxviruses (variola, vaccinia, cowpox, monkeypox, camelpox, ectromelia, and gerbilpox viruses). RsaI digest electropherograms of the amplified DNAs of the former subgroup provided species differentiation, and TaqI digests differentiated the Eurasian-African orthopoxviruses, including vaccinia virus from the vaccinia virus subspecies buffalopox virus. Endonuclease HhaI digest patterns distinguished smallpox variola major viruses from alastrim variola minor viruses. For the Eurasian-African orthopoxviruses, a confirmatory step that used a set of higher-sequence-homology primers was developed to provide sensitivity to discern individual virus HA DNAs from cross-contaminated orthopoxvirus DNA samples; TaqI and HhaI digestions of the individual amplified HA DNAs confirmed virus identity. Finally, a set of primers and modified PCR conditions were developed on the basis of base sequence differences within the HA genes of the 10 species, which enabled production of a single DNA fragment of a particular size that indicated the specific species.

Susceptibility of various Japanese freshwater fish species to an isolate of viral haemorrhagic septicaemia virus (VHSV) genotype IVb

DEFF Research Database (Denmark)

Ito, Takafumi; Olesen, Niels Jørgen

2013-01-01

Genotype IVb of viral haemorrhagic septicaemia virus (VHSV) was isolated for the first time in the Great Lakes basin in 2003, where it spread and caused mass mortalities in several wild fish species throughout the basin. In order to prevent further spreading of the disease and to assess risks...... mortalities in bluegill Lepomis macrochirus used as positive controls, Japanese fluvial sculpin Cottus pollux, and iwana Salvelinus leucomaenis pluvius were 50, 80 and 0%, respectively. In Expt 2, cumulative mortalities of 100, 100 and 10% were observed in Japanese fluvial sculpin C. pollux, Japanese rice......-isolation by cell culture was successful from all dead fish. We detected the virus in the brain from a few surviving bluegill 50 d post exposure by both cell culture and RT-PCR. These results revealed that VHSV IVb could become a serious threat to wild freshwater fish species in Japan, and that some surviving fish...

Assessment of virus removal by managed aquifer recharge at three full-scale operations.

Science.gov (United States)

Betancourt, Walter Q; Kitajima, Masaaki; Wing, Alexandre D; Regnery, Julia; Drewes, Jörg E; Pepper, Ian L; Gerba, Charles P

2014-01-01

Managed aquifer recharge (MAR) systems such as riverbank filtration and soil-aquifer treatment all involve the use of natural subsurface systems to improve the quality of recharged water (i.e. surface water, stormwater, reclaimed water) before reuse. During MAR, water is either infiltrated via basins, subsurface injected or abstracted from wells adjacent to rivers. The goal of this study was to assess the removal of selected enteric viruses and a potential surrogate for virus removal at three full-scale MAR systems located in different regions of the United States (Arizona, Colorado, and California). Samples of source water (i.e., river water receiving treated wastewater and reclaimed water) before recharge and recovered groundwater at all three sites were tested for adenoviruses, enteroviruses, Aichi viruses and pepper mild mottle virus (PMMoV) by quantitative polymerase chain reaction (qPCR). Samples of groundwater positive for any virus were also tested for the presence of infectious virus by cell culture. PMMoV was the most commonly detected virus in the groundwater samples. Infectious enteric viruses (reovirus) were only detected in one groundwater sample with a subsurface residence time of 5 days. The results suggested that in groundwater with a residence time of greater than 14 days all of the viruses are removed below detection indicating a 1 to greater than 5 log removal depending upon the type of virus. Given its behavior, PMMoV may be suitable to serve as a conservative tracer of enteric virus removal in managed aquifer treatment systems.

Spatial and temporal dynamics of hepatitis B virus D genotype in Europe and the Mediterranean Basin.

Directory of Open Access Journals (Sweden)

Gianguglielmo Zehender

Full Text Available Hepatitis B virus genotype D can be found in many parts of the world and is the most prevalent strain in south-eastern Europe, the Mediterranean Basin, the Middle East, and the Indian sub-continent. The epidemiological history of the D genotype and its subgenotypes is still obscure because of the scarcity of appropriate studies. We retrieved from public databases a total of 312 gene P sequences of HBV genotype D isolated in various countries throughout the world, and reconstructed the spatio-temporal evolutionary dynamics of the HBV-D epidemic using a bayesian framework.The phylogeographical analysis showed that India had the highest posterior probability of being the location of the tree root, whereas central Asia was the most probable location of the common ancestor of subgenotypes D1-D3. HBV-D5 (identified in native Indian populations diverged from the tree root earlier than D1-D3. The time of the most recent common ancestor (tMRCA of the tree root was 128 years ago, which suggests that the common ancestor of the currently circulating subgenotypes existed in the second half of the XIX century. The mean tMRCA of subgenotypes D1-D3 was between the 1940s and the 1950-60s. On the basis of our phylogeographic reconstruction, it seems that HBV-D reached the Mediterranean area in the middle of the XX century by means of at least two routes: the first pathway (mainly due to the spread of subgenotype D1 crossing the Middle East and reaching north Africa and the eastern Mediterranean, and the second pathway (closely associated with D2 that crossed the former Soviet Union and reached eastern Europe and the Mediterranean through Albania. We hypothesise that the main route of dispersion of genotype D was the unsafe use of injections and drug addiction.

Hepatitis B virus, syphilis, and HIV seroprevalence in pregnant women and their male partners from six indigenous populations of the Peruvian Amazon Basin, 2007-2008.

Science.gov (United States)

Ormaeche, Melvy; Whittembury, Alvaro; Pun, Mónica; Suárez-Ognio, Luis

2012-10-01

To assess the seroprevalence of hepatitis B virus (HBV), syphilis, and HIV and associated risk factors in pregnant women and their male partners from six indigenous populations of the Peruvian Amazon Basin. A cross-sectional study was performed in six indigenous populations from the Peruvian Amazon Basin. Blood samples were obtained and tested for HBV (antibodies to the hepatitis B core antigen (anti-HBc) and hepatitis B surface antigen (HBsAg)), for syphilis (rapid plasma reagin and microhemagglutination assay for Treponema pallidum antibodies), and for HIV (ELISA and indirect immunofluorescence test). A survey was also performed to identify associated risk factors. One thousand two hundred and fifty-one pregnant women and 778 male partners were enrolled in the study. The seroprevalence of anti-HBc in pregnant women was 42.06% (95% confidence interval (CI) 39.28-44.85%) and in their male partners was 54.09% (95% CI 50.32-57.86%). The seroprevalence of HBsAg in pregnant women was 2.11% (95% CI 0.78-3.44%) and in their male partners was 3.98% (95% CI 1.87-6.08%). The seroprevalence of syphilis in pregnant women was 1.60% (95% CI 0.86-2.33%) and in their male partners was 2.44% (95% CI 1.22-3.66%). HIV seroprevalence in pregnant women was 0.16% (95% CI 0.02-0.58%) and in their male partners was 0.29% (95% CI 0.04-1.03%). Sexual risk factors were strongly related to blood markers of syphilis and HBV. Hepatitis B was found to be hyperendemic and strongly related to sexual factors, suggesting an important sexual component in the transmission of the disease in the populations studied. Syphilis was found to have an endemicity in pregnant women above the national level and this may be indicative of high mother-to-child transmission. HIV has started to show its presence in indigenous populations of the Amazon Basin and the results suggest the epidemic is concentrated. Copyright © 2012 International Society for Infectious Diseases. Published by Elsevier Ltd. All rights

From actually toxic to highly specific – novel drugs against poxviruses

Directory of Open Access Journals (Sweden)

Schnierle Barbara

2007-01-01

Full Text Available Abstract The potential use of variola virus, the causative agent of smallpox, as a bioweapon and the endemic presence of monkeypox virus in Africa demonstrate the need for better therapies for orthopoxvirus infections. Chemotherapeutic approaches to control viral infections have been less successful than those targeting bacterial infections. While bacteria commonly reproduce themselves outside of cells and have metabolic functions against which antibiotics can be directed, viruses replicate in the host cells using the cells' metabolic pathways. This makes it very difficult to selectively target the virus without damaging the host. Therefore, the development of antiviral drugs against poxviruses has initially focused on unique properties of the viral replication cycle or of viral proteins that can be selectively targeted. However, recent advances in molecular biology have provided insights into host factors that represent novel drug targets. The latest anti-poxvirus drugs are kinase inhibitors, which were originally developed to treat cancer progression but in addition block egress of poxviruses from infected cells. This review will summarize the current understanding of anti-poxvirus drugs and will give an overview of the development of the latest second generation poxvirus drugs.

The Central European Permian Basins; Rheological and structural controls on basin history and on inter-basin connectivity

NARCIS (Netherlands)

Smit, Jeroen; van Wees, Jan-Diederik; Cloetingh, Sierd

2014-01-01

We analyse the relative importance of the major crustal-scale fault zones and crustal architecture in controlling basin formation, deformation and the structural connections between basins. The North and South Permian Basins of Central Europe are usually defined by the extend of Rotliegend

Comparative Research on River Basin Management in the Sagami River Basin (Japan and the Muda River Basin (Malaysia

Directory of Open Access Journals (Sweden)

Lay Mei Sim

2018-05-01

Full Text Available In the world, river basins often interwoven into two or more states or prefectures and because of that, disputes over water are common. Nevertheless, not all shared river basins are associated with water conflicts. Rivers in Japan and Malaysia play a significant role in regional economic development. They also play a significant role as water sources for industrial, domestic, agricultural, aquaculture, hydroelectric power generation, and the environment. The research aim is to determine the similarities and differences between the Sagami and Muda River Basins in order to have a better understanding of the governance needed for effectively implementing the lessons drawn from the Sagami River Basin for improving the management of the Muda River Basin in Malaysia. This research adopts qualitative and quantitative approaches. Semi-structured interviews were held with the key stakeholders from both basins and show that Japan has endeavored to present policy efforts to accommodate the innovative approaches in the management of their water resources, including the establishment of a river basin council. In Malaysia, there is little or no stakeholder involvement in the Muda River Basin, and the water resource management is not holistic and is not integrated as it should be. Besides that, there is little or no Integrated Resources Water Management, a pre-requisite for sustainable water resources. The results from this comparative study concluded that full support and participation from public stakeholders (meaning the non-government and non-private sector stakeholders is vital for achieving sustainable water use in the Muda River Basin. Integrated Water Resources Management (IWRM approaches such as the introduction of payments for ecosystems services and the development of river basin organization in the Muda River Basin should take place in the spirit of political willingness.

Identification and genetic analysis of Panama-genotype Venezuelan equine encephalitis virus subtype ID in Peru.

Science.gov (United States)

Oberste, M S; Weaver, S C; Watts, D M; Smith, J F

1998-01-01

Venezuelan equine encephalitis (VEE) virus was isolated in 1993, 1994, and 1995 from human cases of acute, undifferentiated, febrile illness in the Peruvian Amazon Basin. Two virus isolates were recovered in 1994 from Peruvian soldiers at a jungle outpost near Pantoja in northern Peru, and 10 isolates were obtained from military personnel and civilians in 1993-1995 in Iquitos, an urban center in northeastern Peru. The genetic relationship of these isolates to other VEE virus strains was determined by sequencing 856-867 nucleotide reverse transcription-polymerase chain reaction fragments derived from the PE2 glycoprotein gene. The sequences were compared with those of other VEE virus strains, including representatives of the IAB, IC, ID, IE, II, and IIIC subtypes. The two Pantoja isolates were most closely related to subtype IC and ID viruses previously isolated in Colombia and Venezuela, and to the ID viruses isolated during the 1970s in Iquitos. All of the recent Iquitos isolates were similar to one another, but they were more closely related to Panamanian ID strains than to isolates previously obtained in Iquitos, Peru, or in Colombia and Venezuela. The recent Iquitos VEE viral isolates were the first Panama-genotype VEE ID virus strains identified outside of the Republic of Panama.

Drainage basins features and hydrological behaviour river Minateda basin

International Nuclear Information System (INIS)

Alonso-Sarria, F.

1991-01-01

Nine basin variables (shape, size and topology) have been analyzed in four small basins with non-permanent run off (SE of Spain). These geomorphological variables have been selected for their high correlation with the Instantaneous unit hydrograph parameters. It is shown that the variables can change from one small basin to another within a very short area; because of it, generalizations about the behaviour of the run off are not possible. In conclusion, it is stated that the variations in geomorphological aspects between different basins, caused mainly by geological constraints, are a very important factor to be controlled in a study of geoecological change derived from climatic change

RESERVES IN WESTERN BASINS PART IV: WIND RIVER BASIN

Energy Technology Data Exchange (ETDEWEB)

Robert Caldwell

1998-04-01

Vast quantities of natural gas are entrapped within various tight formations in the Rocky Mountain area. This report seeks to quantify what proportion of that resource can be considered recoverable under today's technological and economic conditions and discusses factors controlling recovery. The ultimate goal of this project is to encourage development of tight gas reserves by industry through reducing the technical and economic risks of locating, drilling and completing commercial tight gas wells. This report is the fourth in a series and focuses on the Wind River Basin located in west central Wyoming. The first three reports presented analyses of the tight gas reserves and resources in the Greater Green River Basin (Scotia, 1993), Piceance Basin (Scotia, 1995) and the Uinta Basin (Scotia, 1995). Since each report is a stand-alone document, duplication of language will exist where common aspects are discussed. This study, and the previous three, describe basin-centered gas deposits (Masters, 1979) which contain vast quantities of natural gas entrapped in low permeability (tight), overpressured sandstones occupying a central basin location. Such deposits are generally continuous and are not conventionally trapped by a structural or stratigraphic seal. Rather, the tight character of the reservoirs prevents rapid migration of the gas, and where rates of gas generation exceed rates of escape, an overpressured basin-centered gas deposit results (Spencer, 1987). Since the temperature is a primary controlling factor for the onset and rate of gas generation, these deposits exist in the deeper, central parts of a basin where temperatures generally exceed 200 F and drill depths exceed 8,000 feet. The abbreviation OPT (overpressured tight) is used when referring to sandstone reservoirs that comprise the basin-centered gas deposit. Because the gas resources trapped in this setting are so large, they represent an important source of future gas supply, prompting studies

Ebola Virus and Marburg Virus

Science.gov (United States)

Ebola virus and Marburg virus Overview Ebola virus and Marburg virus are related viruses that cause hemorrhagic fevers — illnesses marked by severe bleeding (hemorrhage), organ failure and, in many ...

Chayote mosaic virus, a New Tymovirus Infecting Cucurbitaceae.

Science.gov (United States)

Bernal, J J; Jiménez, I; Moreno, M; Hord, M; Rivera, C; Koenig, R; Rodríguez-Cerezo, E

2000-10-01

ABSTRACT Chayote mosaic virus (ChMV) is a putative tymovirus isolated from chayote crops in Costa Rica. ChMV was characterized at the host range, serological, and molecular levels. ChMV was transmitted mechanically and induced disease symptoms mainly in Cucurbitaceae hosts. Asymptomatic infections were detected in other host families. Serologically, ChMV is related to the Andean potato latent virus (APLV) and the Eggplant mosaic virus (EMV), both members of the genus Tymovirus infecting solanaceous hosts in the Caribbean Basin and South America. The sequence of the genomic RNA of ChMV was determined and its genetic organization was typical of tymoviruses. Comparisons with other tymoviral sequences showed that ChMV was a new member of the genus Tymovirus. The phylogenetic analyses of the coat protein gene were consistent with serological comparisons and positioned ChMV within a cluster of tymoviruses infecting mainly cucurbit or solanaceous hosts, including APLV and EMV. Phylogenetic analyses of the replicase protein gene confirmed the close relationship of ChMV and EMV. Our results suggest that ChMV is related to two tymoviruses (APLV and EMV) of proximal geographical provenance but with different natural host ranges. ChMV is the first cucurbit-infecting tymovirus to be fully characterized at the genomic level.

Contrasting basin architecture and rifting style of the Vøring Basin, offshore mid-Norway and the Faroe-Shetland Basin, offshore United Kingdom

Science.gov (United States)

Schöpfer, Kateřina; Hinsch, Ralph

2017-04-01

The Vøring and the Faroe-Shetland basins are offshore deep sedimentary basins which are situated on the outer continental margin of the northeast Atlantic Ocean. Both basins are underlain by thinned continental crust whose structure is still debated. In particular the nature of the lower continental crust and the origin of high velocity bodies located at the base of the lower crust are a subject of discussion in recent literature. Regional interpretation of 2D and 3D seismic reflection data, combined with well data, suggest that both basins share several common features: (i) Pre-Cretaceous faults that are distributed across the entire basin width. (ii) Geometries of pre-Jurassic strata reflecting at least two extensional phases. (iii) Three common rift phases, Late Jurassic, Campanian-Maastrichtian and Palaeocene. (iv) Large pre-Cretaceous fault blocks that are buried by several kilometres of Cretaceous and Cenozoic strata. (iii). (v) Latest Cretaceous/Palaeocene inversion. (vi) Occurrence of partial mantle serpentinization during Early Cretaceous times, as proposed by other studies, seems improbable. The detailed analysis of the data, however, revealed significant differences between the two basins: (i) The Faroe-Shetland Basin was a fault-controlled basin during the Late Jurassic but also the Late Cretaceous extensional phase. In contrast, the Vøring Basin is dominated by the late Jurassic rifting and subsequent thermal subsidence. It exhibits only minor Late Cretaceous faults that are localised above intra-basinal and marginal highs. In addition, the Cretaceous strata in the Vøring Basin are folded. (ii) In the Vøring Basin, the locus of Late Cretaceous rifting shifted westwards, affecting mainly the western basin margin, whereas in the Faroe-Shetland Basin Late Cretaceous rifting was localised in the same area as the Late Jurassic phase, hence masking the original Jurassic geometries. (iii) Devono-Carboniferous and Aptian/Albian to Cenomanian rift phases

Terrestrial vegetation and aquatic chemistry influence larval mosquito abundance in catch basins, Chicago, USA

Directory of Open Access Journals (Sweden)

Gardner Allison M

2013-01-01

Full Text Available Abstract Background An important determinant of mosquito-borne pathogen transmission is the spatial distribution of vectors. The primary vectors of West Nile virus (WNV in Illinois are Culex pipiens Linnaeus (Diptera: Culicidae and Culex restuans Theobald. In urban environments, these mosquitoes commonly oviposit in roadside storm water catch basins. However, use of this habitat is inconsistent, with abundance of larvae varying significantly across catch basins at a fine spatial scale. Methods We tested the hypothesis that attributes of the biotic and abiotic environment contribute to spatial and temporal variation in production of mosquito vectors, characterizing the relationship between terrestrial vegetation and aquatic chemistry and Culex abundance in Chicago, Illinois. Larvae were sampled from 60 catch basins from June 14 to October 3, 2009. Density of shrubs and 14 tree genera surrounding the basins were quantified, as well as aquatic chemistry content of each basin. Results We demonstrate that the spatial pattern of Culex abundance in catch basins is strongly influenced by environmental characteristics, resulting in significant variation across the urban landscape. Using regression and machine learning techniques, we described landscape features and microhabitat characteristics of four Chicago neighborhoods and examined the implications of these measures for larval abundance in adjacent catch basins. The important positive predictors of high larval abundance were aquatic ammonia, nitrates, and area of shrubs of height Culex during the fruit-bearing periods and early senescent periods in August and September. Conclusions This study identifies environmental predictors of mosquito production in urban environments. Because an abundance of adult Culex is integral to efficient WNV transmission and mosquitoes are found in especially high densities near larval habitats, identifying aquatic sites for Culex and landscape features that promote

Estimating tectonic history through basin simulation-enhanced seismic inversion: Geoinformatics for sedimentary basins

Science.gov (United States)

Tandon, K.; Tuncay, K.; Hubbard, K.; Comer, J.; Ortoleva, P.

2004-01-01

A data assimilation approach is demonstrated whereby seismic inversion is both automated and enhanced using a comprehensive numerical sedimentary basin simulator to study the physics and chemistry of sedimentary basin processes in response to geothermal gradient in much greater detail than previously attempted. The approach not only reduces costs by integrating the basin analysis and seismic inversion activities to understand the sedimentary basin evolution with respect to geodynamic parameters-but the technique also has the potential for serving as a geoinfomatics platform for understanding various physical and chemical processes operating at different scales within a sedimentary basin. Tectonic history has a first-order effect on the physical and chemical processes that govern the evolution of sedimentary basins. We demonstrate how such tectonic parameters may be estimated by minimizing the difference between observed seismic reflection data and synthetic ones constructed from the output of a reaction, transport, mechanical (RTM) basin model. We demonstrate the method by reconstructing the geothermal gradient. As thermal history strongly affects the rate of RTM processes operating in a sedimentary basin, variations in geothermal gradient history alter the present-day fluid pressure, effective stress, porosity, fracture statistics and hydrocarbon distribution. All these properties, in turn, affect the mechanical wave velocity and sediment density profiles for a sedimentary basin. The present-day state of the sedimentary basin is imaged by reflection seismology data to a high degree of resolution, but it does not give any indication of the processes that contributed to the evolution of the basin or causes for heterogeneities within the basin that are being imaged. Using texture and fluid properties predicted by our Basin RTM simulator, we generate synthetic seismograms. Linear correlation using power spectra as an error measure and an efficient quadratic

3-D basin modelling of the Paris Basin: diagenetic and hydrogeologic implications

International Nuclear Information System (INIS)

Violette, S.; Goncalves, J.; Jost, A.; Marsily, G. de

2004-01-01

A 3-D basin model of the Paris basin is presented in order to simulate through geological times fluid, heat and solute fluxes. This study emphasizes: i) the contribution of basin models to the quantitative hydrodynamic understanding of behaviour of the basin over geological times; ii) the additional use of Atmospheric General Circulation model (AGCM) to provide palaeo-climatic boundaries for a coupled flow and mass transfer modelling, constrained by geochemical and isotopic tracers and; iii) the integration of different types of data (qualitative and quantitative) to better constrain the simulations. Firstly, in a genetic way, basin model is used to reproduce geological, physical and chemical processes occurring in the course of the 248 My evolution of the Paris basin that ought to explain the present-day hydraulic properties at the regional scale. As basin codes try to reproduce some of these phenomena, they should be able to give a plausible idea of the regional-scale permeability distribution of the multi-layered system, of the pre-industrial hydrodynamic conditions within the aquifers and of the diagenesis timing and type of hydrodynamic processes involved. Secondly, climate records archived in the Paris basin groundwater suggest that climate and morphological features have an impact on the hydrogeological processes, particularly during the last 5 My. An Atmospheric General Circulation model is used with a refined spatial resolution centred on the Paris basin to reproduce the climate for the present, the Last Glacial Maximum (21 ky) and the middle Pliocene (3 My). These climates will be prescribed, through forcing functions to the hydrological code with the main objective of understanding the way aquifers and aquitards react under different climate conditions, the period and the duration of these effects. Finally, the Paris basin has been studied for a number of years by different scientific communities, thus a large amount of data has been collected. By

Fishes of the Taquari-Antas river basin (Patos Lagoon basin, southern Brazil

Directory of Open Access Journals (Sweden)

FG. Becker

Full Text Available The aquatic habitats of the Taquari-Antas river basin (in the Patos Lagoon basin, southern Brazil are under marked environmental transformation because of river damming for hydropower production. In order to provide an information baseline on the fish fauna of the Taquari-Antas basin, we provide a comprehensive survey of fish species based on primary and secondary data. We found 5,299 valid records of fish species in the basin, representing 119 species and 519 sampling sites. There are 13 non-native species, six of which are native to other Neotropical river basins. About 24% of the total native species are still lacking a taxonomic description at the species level. Three native long-distance migratory species were recorded (Leporinus obtusidens, Prochilodus lineatus, Salminus brasiliensis, as well as two potential mid-distance migrators (Parapimelodus nigribarbis and Pimelodus pintado. Although there is only one officially endangered species in the basin (S. brasiliensis, restricted range species (21.7% of total species should be considered in conservation efforts.

K-Basins design guidelines

International Nuclear Information System (INIS)

Roe, N.R.; Mills, W.C.

1995-06-01

The purpose of the design guidelines is to enable SNF and K Basin personnel to complete fuel and sludge removal, and basin water mitigation by providing engineering guidance for equipment design for the fuel basin, facility modifications (upgrades), remote tools, and new processes. It is not intended to be a purchase order reference for vendors. The document identifies materials, methods, and components that work at K Basins; it also Provides design input and a technical review process to facilitate project interfaces with operations in K Basins. This document is intended to compliment other engineering documentation used at K Basins and throughout the Spent Nuclear Fuel Project. Significant provisions, which are incorporated, include portions of the following: General Design Criteria (DOE 1989), Standard Engineering Practices (WHC-CM-6-1), Engineering Practices Guidelines (WHC 1994b), Hanford Plant Standards (DOE-RL 1989), Safety Analysis Manual (WHC-CM-4-46), and Radiological Design Guide (WHC 1994f). Documents (requirements) essential to the engineering design projects at K Basins are referenced in the guidelines

Virus-Vectored Influenza Virus Vaccines

Science.gov (United States)

Tripp, Ralph A.; Tompkins, S. Mark

2014-01-01

Despite the availability of an inactivated vaccine that has been licensed for >50 years, the influenza virus continues to cause morbidity and mortality worldwide. Constant evolution of circulating influenza virus strains and the emergence of new strains diminishes the effectiveness of annual vaccines that rely on a match with circulating influenza strains. Thus, there is a continued need for new, efficacious vaccines conferring cross-clade protection to avoid the need for biannual reformulation of seasonal influenza vaccines. Recombinant virus-vectored vaccines are an appealing alternative to classical inactivated vaccines because virus vectors enable native expression of influenza antigens, even from virulent influenza viruses, while expressed in the context of the vector that can improve immunogenicity. In addition, a vectored vaccine often enables delivery of the vaccine to sites of inductive immunity such as the respiratory tract enabling protection from influenza virus infection. Moreover, the ability to readily manipulate virus vectors to produce novel influenza vaccines may provide the quickest path toward a universal vaccine protecting against all influenza viruses. This review will discuss experimental virus-vectored vaccines for use in humans, comparing them to licensed vaccines and the hurdles faced for licensure of these next-generation influenza virus vaccines. PMID:25105278

Intra- and inter-basin mercury comparisons: Importance of basin scale and time-weighted methylmercury estimates

International Nuclear Information System (INIS)

Bradley, Paul M.; Journey, Celeste A.; Brigham, Mark E.; Burns, Douglas A.; Button, Daniel T.; Riva-Murray, Karen

2013-01-01

To assess inter-comparability of fluvial mercury (Hg) observations at substantially different scales, Hg concentrations, yields, and bivariate-relations were evaluated at nested-basin locations in the Edisto River, South Carolina and Hudson River, New York. Differences between scales were observed for filtered methylmercury (FMeHg) in the Edisto (attributed to wetland coverage differences) but not in the Hudson. Total mercury (THg) concentrations and bivariate-relationships did not vary substantially with scale in either basin. Combining results of this and a previously published multi-basin study, fish Hg correlated strongly with sampled water FMeHg concentration (ρ = 0.78; p = 0.003) and annual FMeHg basin yield (ρ = 0.66; p = 0.026). Improved correlation (ρ = 0.88; p < 0.0001) was achieved with time-weighted mean annual FMeHg concentrations estimated from basin-specific LOADEST models and daily streamflow. Results suggest reasonable scalability and inter-comparability for different basin sizes if wetland area or related MeHg-source-area metrics are considered. - Highlights: ► National scale mercury assessments integrate small scale study results. ► Basin scale differences and representativeness of fluvial mercury samples are concerns. ► Wetland area, not basin size, predicts inter-basin methylmercury variability. ► Time-weighted methylmercury estimates improve the prediction of mercury in basin fish. - Fluvial methylmercury concentration correlates with wetland area not basin scale and time-weighted estimates better predict basin top predator mercury than discrete sample estimates.

The NS3 proteins of global strains of bluetongue virus evolve into regional topotypes through negative (purifying) selection.

Science.gov (United States)

Balasuriya, U B R; Nadler, S A; Wilson, W C; Pritchard, L I; Smythe, A B; Savini, G; Monaco, F; De Santis, P; Zhang, N; Tabachnick, W J; Maclachlan, N J

2008-01-01

Comparison of the deduced amino acid sequences of the genes (S10) encoding the NS3 protein of 137 strains of bluetongue virus (BTV) from Africa, the Americas, Asia, Australia and the Mediterranean Basin showed limited variation. Common to all NS3 sequences were potential glycosylation sites at amino acid residues 63 and 150 and a cysteine at residue 137, whereas a cysteine at residue 181 was not conserved. The PPXY and PS/TAP late-domain motifs were conserved in all but three of the viruses. Phylogenetic analyses of these same sequences yielded two principal clades that grouped the viruses irrespective of their serotype or year of isolation (1900-2003). All viruses from Asia and Australia were grouped in one clade, whereas those from the other regions were present in both clades. Each clade segregated into distinct subclades that included viruses from single or multiple regions, and the S10 genes of some field viruses were identical to those of live-attenuated BTV vaccines. There was no evidence of positive selection on the S10 gene as assessed by reconstruction of ancestral codon states on the phylogeny, rather the functional constraints of the NS3 protein are expressed through substantial negative (purifying) selection.

A framework model for water-sharing among co-basin states of a river basin

Science.gov (United States)

Garg, N. K.; Azad, Shambhu

2018-05-01

A new framework model is presented in this study for sharing of water in a river basin using certain governing variables, in an effort to enhance the objectivity for a reasonable and equitable allocation of water among co-basin states. The governing variables were normalised to reduce the governing variables of different co-basin states of a river basin on same scale. In the absence of objective methods for evaluating the weights to be assigned to co-basin states for water allocation, a framework was conceptualised and formulated to determine the normalised weighting factors of different co-basin states as a function of the governing variables. The water allocation to any co-basin state had been assumed to be proportional to its struggle for equity, which in turn was assumed to be a function of the normalised discontent, satisfaction, and weighting factors of each co-basin state. System dynamics was used effectively to represent and solve the proposed model formulation. The proposed model was successfully applied to the Vamsadhara river basin located in the South-Eastern part of India, and a sensitivity analysis of the proposed model parameters was carried out to prove its robustness in terms of the proposed model convergence and validity over the broad spectrum values of the proposed model parameters. The solution converged quickly to a final allocation of 1444 million cubic metre (MCM) in the case of the Odisha co-basin state, and to 1067 MCM for the Andhra Pradesh co-basin state. The sensitivity analysis showed that the proposed model's allocation varied from 1584 MCM to 1336 MCM for Odisha state and from 927 to 1175 MCM for Andhra, depending upon the importance weights given to the governing variables for the calculation of the weighting factors. Thus, the proposed model was found to be very flexible to explore various policy options to arrive at a decision in a water sharing problem. It can therefore be effectively applied to any trans-boundary problem where

Basins in ARC-continental collisions

Science.gov (United States)

Draut, Amy E.; Clift, Peter D.; Busby, Cathy; Azor, Antonio

2012-01-01

Arc-continent collisions occur commonly in the plate-tectonic cycle and result in rapidly formed and rapidly collapsing orogens, often spanning just 5-15 My. Growth of continental masses through arc-continent collision is widely thought to be a major process governing the structural and geochemical evolution of the continental crust over geologic time. Collisions of intra-oceanic arcs with passive continental margins (a situation in which the arc, on the upper plate, faces the continent) involve a substantially different geometry than collisions of intra-oceanic arcs with active continental margins (a situation requiring more than one convergence zone and in which the arc, on the lower plate, backs into the continent), with variable preservation potential for basins in each case. Substantial differences also occur between trench and forearc evolution in tectonically erosive versus tectonically accreting margins, both before and after collision. We examine the evolution of trenches, trench-slope basins, forearc basins, intra-arc basins, and backarc basins during arc-continent collision. The preservation potential of trench-slope basins is low; in collision they are rapidly uplifted and eroded, and at erosive margins they are progressively destroyed by subduction erosion. Post-collisional preservation of trench sediment and trench-slope basins is biased toward margins that were tectonically accreting for a substantial length of time before collision. Forearc basins in erosive margins are usually floored by strong lithosphere and may survive collision with a passive margin, sometimes continuing sedimentation throughout collision and orogeny. The low flexural rigidity of intra-arc basins makes them deep and, if preserved, potentially long records of arc and collisional tectonism. Backarc basins, in contrast, are typically subducted and their sediment either lost or preserved only as fragments in melange sequences. A substantial proportion of the sediment derived from

Superposition of tectonic structures leading elongated intramontane basin: the Alhabia basin (Internal Zones, Betic Cordillera)

Science.gov (United States)

Martínez-Martos, Manuel; Galindo-Zaldivar, Jesús; Martínez-Moreno, Francisco José; Calvo-Rayo, Raquel; Sanz de Galdeano, Carlos

2017-10-01

The relief of the Betic Cordillera was formed since the late Serravallian inducing the development of intramontane basins. The Alhabia basin, situated in the central part of the Internal Zones, is located at the intersection of the Alpujarran Corridor, the Tabernas basin, both trending E-W, and the NW-SE oriented Gádor-Almería basin. The geometry of the basin has been constrained by new gravity data. The basin is limited to the North by the Sierra de Filabres and Sierra Nevada antiforms that started to develop in Serravallian times under N-S shortening and to the south by Sierra Alhamilla and Sierra de Gádor antiforms. Plate convergence in the region rotated counter-clockwise in Tortonian times favouring the formation of E-W dextral faults. In this setting, NE-SW extension, orthogonal to the shortening direction, was accommodated by normal faults on the SW edge of Sierra Alhamilla. The Alhabia basin shows a cross-shaped depocentre in the zone of synform and fault intersection. This field example serves to constrain recent counter-clockwise stress rotation during the latest stages of Neogene-Quaternary basin evolution in the Betic Cordillera Internal Zones and underlines the importance of studying the basins' deep structure and its relation with the tectonic structures interactions.

SimBasin: serious gaming for integrated decision-making in the Magdalena-Cauca basin

Science.gov (United States)

Craven, Joanne; Angarita, Hector; Corzo, Gerald

2016-04-01

The Magdalena-Cauca macrobasin covers 24% of the land area of Colombia, and provides more than half of the country's economic potential. The basin is also home a large proportion of Colombia's biodiversity. These conflicting demands have led to problems in the basin, including a dramatic fall in fish populations, additional flooding (such as the severe nationwide floods caused by the La Niña phenomenon in 2011), and habitat loss. It is generally believed that the solution to these conflicts is to manage the basin in a more integrated way, and bridge the gaps between decision-makers in different sectors and scientists. To this end, inter-ministerial agreements are being formulated and a decision support system is being developed by The Nature Conservancy Colombia. To engage stakeholders in this process SimBasin, a "serious game", has been developed. It is intended to act as a catalyst for bringing stakeholders together, an illustration of the uncertainties, relationships and feedbacks in the basin, and an accessible introduction to modelling and decision support for non-experts. During the game, groups of participants are led through a 30 year future development of the basin, during which they take decisions about the development of the basin and see the impacts on four different sectors: agriculture, hydropower, flood risk, and environment. These impacts are displayed through seven indicators, which players should try to maintain above critical thresholds. To communicate the effects of uncertainty and climate variability, players see the actual value of the indicator and also a band of possible values, so they can see if their decisions have actually reduced risk or if they just "got lucky". The game works as a layer on top of a WEAP water resources model of the basin, adapted from a basin-wide model already created, so the fictional game basin is conceptually similar to the Magdalena-Cauca basin. The game is freely available online, and new applications are being

Relating petroleum system and play development to basin evolution: West African South Atlantic basins

NARCIS (Netherlands)

Beglinger, S.E.; Doust, H.; Cloetingh, S.A.P.L.

2012-01-01

Sedimentary basins can be classified according to their structural genesis and evolutionary history and the latter can be linked to petroleumsystem and playdevelopment. We propose an approach in which we use the established concepts in a new way: breaking basins down into their natural basin cycle

K Basin safety analysis

International Nuclear Information System (INIS)

Porten, D.R.; Crowe, R.D.

1994-01-01

The purpose of this accident safety analysis is to document in detail, analyses whose results were reported in summary form in the K Basins Safety Analysis Report WHC-SD-SNF-SAR-001. The safety analysis addressed the potential for release of radioactive and non-radioactive hazardous material located in the K Basins and their supporting facilities. The safety analysis covers the hazards associated with normal K Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. After a review of the Criticality Safety Evaluation of the K Basin activities, the following postulated events were evaluated: Crane failure and casks dropped into loadout pit; Design basis earthquake; Hypothetical loss of basin water accident analysis; Combustion of uranium fuel following dryout; Crane failure and cask dropped onto floor of transfer area; Spent ion exchange shipment for burial; Hydrogen deflagration in ion exchange modules and filters; Release of Chlorine; Power availability and reliability; and Ashfall

Melo carboniferous basin

International Nuclear Information System (INIS)

Flossdarf, A.

1988-01-01

This report is about of the Melo carboniferous basin which limits are: in the South the large and high Tupambae hill, in the west the Paraiso hill and the river mountains, in the North Yaguaron river basin to Candidata in Rio Grande del Sur in Brazil.

Basin Hopping Graph

DEFF Research Database (Denmark)

Kucharik, Marcel; Hofacker, Ivo; Stadler, Peter

2014-01-01

of the folding free energy landscape, however, can provide the relevant information. Results We introduce the basin hopping graph (BHG) as a novel coarse-grained model of folding landscapes. Each vertex of the BHG is a local minimum, which represents the corresponding basin in the landscape. Its edges connect...

Active intra-basin faulting in the Northern Basin of Lake Malawi from seismic reflection data

Science.gov (United States)

Shillington, D. J.; Chindandali, P. R. N.; Scholz, C. A.; Ebinger, C. J.; Onyango, E. A.; Peterson, K.; Gaherty, J. B.; Nyblade, A.; Accardo, N. J.; McCartney, T.; Oliva, S. J.; Kamihanda, G.; Ferdinand, R.; Salima, J.; Mruma, A. H.

2016-12-01

Many questions remain about the development and evolution of fault systems in weakly extended rifts, including the relative roles of border faults and intra-basin faults, and segmentation at various scales. The northern Lake Malawi (Nyasa) rift in the East African Rift System is an early stage rift exhibiting pronounced tectonic segmentation, which is defined by 100-km-long border faults. The basins also contain a series of intrabasinal faults and associated synrift sediments. The occurrence of the 2009 Karonga Earthquake Sequence on one of these intrabasinal faults indicates that some of them are active. Here we present new multichannel seismic reflection data from the Northern Basin of the Malawi Rift collected in 2015 as a part of the SEGMeNT (Study of Extension and maGmatism in Malawi aNd Tanzania) project. This rift basin is bound on its east side by the west-dipping Livingstone border fault. Over 650 km of seismic reflection profiles were acquired in the Northern Basin using a 500 to 1540 cu in air gun array and a 1200- to 1500-m seismic streamer. Dip lines image a series of north-south oriented west-dipping intra-basin faults and basement reflections up to 5 s twtt near the border fault. Cumulative offsets on intra-basin faults decrease to the west. The largest intra-basin fault has a vertical displacement of >2 s two-way travel time, indicating that it has accommodated significant total extension. Some of these intra-basin faults offset the lake bottom and the youngest sediments by up to 50 s twtt ( 37 m), demonstrating they are still active. The two largest intra-basin faults exhibit the largest offsets of young sediments and also correspond to the area of highest seismicity based on analysis of seismic data from the 89-station SEGMeNT onshore/offshore network (see Peterson et al, this session). Fault patterns in MCS profiles vary along the basin, suggesting a smaller scale of segmentation of faults within the basin; these variations in fault patterns

River basin administration

Science.gov (United States)

Management of international rivers and their basins is the focus of the Centre for Comparative Studies on (International) River Basin Administration, recently established at Delft University of Technology in the Netherlands. Water pollution, sludge, and conflicting interests in the use of water in upstream and downstream parts of a river basin will be addressed by studying groundwater and consumption of water in the whole catchment area of a river.Important aspects of river management are administrative and policy aspects. The Centre will focus on policy, law, planning, and organization, including transboundary cooperation, posing standards, integrated environmental planning on regional scale and environmental impact assessments.

Sediment-hosted micro-disseminated gold mineralization constrained by basin paleo-topographic highs in the Youjiang basin, South China

Science.gov (United States)

Liu, Jianming; Ye, Jie; Ying, Hanlong; Liu, Jiajun; Zheng, Minghua; Gu, Xuexiang

2002-06-01

The Youjiang basin is a Devonian-Triassic rift basin on the southern margin of the Yangtze Craton in South China. Strong syndepositional faulting defined the basin-and-range style paleo-topography that further developed into isolated carbonate platforms surrounded by siliciclastic filled depressions. Finally, thick Triassic siliciclastic deposits covered the platforms completely. In the Youjiang basin, numerous sediment-hosted, micro-disseminated gold (SMG) deposits occur mainly in Permian-Triassic chert and siliciclastic rocks. SMG ores are often auriferous sedimentary rocks with relatively low sulfide contents and moderate to weak alteration. Similar to Carlin-type gold ores in North America, SMG ores in the Youjiang basin are characterized by low-temperature mineral assemblages of pyrite, arsenopyrite, realgar, stibnite, cinnabar, marcasite, chalcedony and carbonate. Most of the SMG deposits are remarkably distributed around the carbonate platforms. Accordingly, there are platform-proximal and platform-distal SMG deposits. Platform-proximal SMG deposits often occur in the facies transition zone between the underlying platform carbonate rocks and the overlying siliciclastic rocks with an unconformity (often a paleo-karst surface) in between. In the ores and hostrocks there are abundant synsedimentary-syndiagenetic fabrics such as lamination, convolute bedding, slump texture, soft-sediment deformation etc. indicating submarine hydrothermal deposition and syndepositional faulting. Numerous fluid-escape and liquefaction fabrics imply strong fluid migration during sediment basin evolution. Such large-scale geological and fabric evidence implies that SMG ores were formed during basin evolution, probably in connection with basinal fluids. It is well known that basinal fluids (especially sediment-sourced fluids) will migrate generally (1) upwards, (2) towards basin margins or basin topographic highs, (3) and from thicker towards thinner deposits during basin evolution

Mapping Monthly Water Scarcity in Global Transboundary Basins at Country-Basin Mesh Based Spatial Resolution.

Science.gov (United States)

Degefu, Dagmawi Mulugeta; Weijun, He; Zaiyi, Liao; Liang, Yuan; Zhengwei, Huang; Min, An

2018-02-01

Currently fresh water scarcity is an issue with huge socio-economic and environmental impacts. Transboundary river and lake basins are among the sources of fresh water facing this challenge. Previous studies measured blue water scarcity at different spatial and temporal resolutions. But there is no global water availability and footprint assessment done at country-basin mesh based spatial and monthly temporal resolutions. In this study we assessed water scarcity at these spatial and temporal resolutions. Our results showed that around 1.6 billion people living within the 328 country-basin units out of the 560 we assessed in this study endures severe water scarcity at least for a month within the year. In addition, 175 country-basin units goes through severe water scarcity for 3-12 months in the year. These sub-basins include nearly a billion people. Generally, the results of this study provide insights regarding the number of people and country-basin units experiencing low, moderate, significant and severe water scarcity at a monthly temporal resolution. These insights might help these basins' sharing countries to design and implement sustainable water management and sharing schemes.

New aerogeophysical study of the Eurasia Basin and Lomonosov Ridge: Implications for basin development

DEFF Research Database (Denmark)

Brozena, J.M.; Childers, V.A.; Lawver, L.A.

2003-01-01

In 1998 and 1999, new aerogeophysical surveys of the Arctic Ocean's Eurasia Basin produced the first collocated gravity and magnetic measurements over the western half of the basin. These data increase the density and extend the coverage of the U.S. Navy acromagnetic data from the 1970s. The new...... data reveal prominent bends in the isochrons that provide solid geometrical constraints for plate reconstructions. Tentative identification of anomaly 25 in the Eurasia Basin links early basin opening to spreading in the Labrador Sea before the locus of spreading in the North Atlantic shifted...... to the Norwegian-Greenland Sea. With the opening of the Labrador Sea, Greenland began similar to200 km of northward movement relative to North America and eventually collided with Svalbard, Ellesmere Island, and the nascent Eurasia ocean basin. Both gravity and magnetic data sets reconstructed to times prior...

Nairobi sheep disease virus/Ganjam virus.

Science.gov (United States)

M D, Baron; B, Holzer

2015-08-01

Nairobi sheep disease virus (NSDV) is a tick-borne virus which causes a severe disease in sheep and goats, and has been responsible for several outbreaks of disease in East Africa. The virus is also found in the Indian subcontinent, where it is known as Ganjam virus. The virus only spreads through the feeding of competent infected ticks, and is therefore limited in its geographic distribution by the distribution of those ticks, Rhipicephalus appendiculata in Africa and Haemaphysalis intermedia in India. Animals bred in endemic areas do not normally develop disease, and the impact is therefore primarily on animals being moved for trade or breeding purposes. The disease caused by NSDV has similarities to several other ruminant diseases, and laboratory diagnosis is necessary for confirmation. There are published methods for diagnosis based on polymerase chain reaction, for virus growth in cell culture and for other simple diagnostic tests, though none has been commercialised. There is no established vaccine against NSDV, although cell-culture attenuated strains have been developed which show promise and could be put into field trials if it were deemed necessary. The virus is closely related to Crimean-Congo haemorrhagic fever virus, and studies on NSDV may therefore be useful in understanding this important human pathogen.

Great Basin Experimental Range: Annotated bibliography

Science.gov (United States)

E. Durant McArthur; Bryce A. Richardson; Stanley G. Kitchen

2013-01-01

This annotated bibliography documents the research that has been conducted on the Great Basin Experimental Range (GBER, also known as the Utah Experiment Station, Great Basin Station, the Great Basin Branch Experiment Station, Great Basin Experimental Center, and other similar name variants) over the 102 years of its existence. Entries were drawn from the original...

Frequency and sources of basin floor turbidites in alfonso basin, Gulf of California, Mexico: Products of slope failures

Science.gov (United States)

Gonzalez-Yajimovich, Oscar E.; Gorsline, Donn S.; Douglas, Robert G.

2007-07-01

Alfonso Basin is a small margin basin formed by extensional tectonics in the actively rifting, seismically active Gulf of California. The basin is centered at 24°40' N and 110° 38' W, and is a closed depression (maximum depth 420 m) with an effective sill depth of about 320 m (deepest sill), a width of 20 km and length of 25 km. Basin floor area below a depth of 350 m is about 260 km 2. The climate is arid to semiarid but was wetter during the early (ca. 10,000-7000 Calendar years Before Present [BP]) and middle Holocene (ca. 7000-4000 Cal. Years BP). Basin-wide turbidity currents reach the floor of Alfonso Basin at centennial to millennial intervals. The peninsular drainages tributary to the basin are small and have maximum flood discharges of the order of 10 4m 3. The basin-floor turbidites thicker than 1 cm have volumes of the order of 10 6m 3 to 10 8m 3 and require a much larger source. The largest turbidite seen in our cores is ca. 1 m thick in the central basin floor and was deposited 4900 Calendar Years Before Present (BP). Two smaller major events occurred about 1500 and 2800 Cal. Years BP. Seismicity over the past century of record shows a clustering of larger epicenters along faults forming the eastern Gulf side of Alfonso Basin. In that period there have been four earthquakes with magnitudes above 7.0 but all are distant from the basin. Frequency of such earthquakes in the basin vicinity is probably millennial. It is concluded that the basin-wide turbidites thicker than 1 cm must be generated by slope failures on the eastern side of the basin at roughly millennial intervals. The thin flood turbidites have a peninsular source at centennial frequencies.

Constraining Basin Depth and Fault Displacement in the Malombe Basin Using Potential Field Methods

Science.gov (United States)

Beresh, S. C. M.; Elifritz, E. A.; Méndez, K.; Johnson, S.; Mynatt, W. G.; Mayle, M.; Atekwana, E. A.; Laó-Dávila, D. A.; Chindandali, P. R. N.; Chisenga, C.; Gondwe, S.; Mkumbwa, M.; Kalaguluka, D.; Kalindekafe, L.; Salima, J.

2017-12-01

The Malombe Basin is part of the Malawi Rift which forms the southern part of the Western Branch of the East African Rift System. At its southern end, the Malawi Rift bifurcates into the Bilila-Mtakataka and Chirobwe-Ntcheu fault systems and the Lake Malombe Rift Basin around the Shire Horst, a competent block under the Nankumba Peninsula. The Malombe Basin is approximately 70km from north to south and 35km at its widest point from east to west, bounded by reversing-polarity border faults. We aim to constrain the depth of the basin to better understand displacement of each border fault. Our work utilizes two east-west gravity profiles across the basin coupled with Source Parameter Imaging (SPI) derived from a high-resolution aeromagnetic survey. The first gravity profile was done across the northern portion of the basin and the second across the southern portion. Gravity and magnetic data will be used to constrain basement depths and the thickness of the sedimentary cover. Additionally, Shuttle Radar Topography Mission (SRTM) data is used to understand the topographic expression of the fault scarps. Estimates for minimum displacement of the border faults on either side of the basin were made by adding the elevation of the scarps to the deepest SPI basement estimates at the basin borders. Our preliminary results using SPI and SRTM data show a minimum displacement of approximately 1.3km for the western border fault; the minimum displacement for the eastern border fault is 740m. However, SPI merely shows the depth to the first significantly magnetic layer in the subsurface, which may or may not be the actual basement layer. Gravimetric readings are based on subsurface density and thus circumvent issues arising from magnetic layers located above the basement; therefore expected results for our work will be to constrain more accurate basin depth by integrating the gravity profiles. Through more accurate basement depth estimates we also gain more accurate displacement

Three-dimensional modeling of pull-apart basins: implications for the tectonics of the Dead Sea Basin

Science.gov (United States)

Katzman, Rafael; ten Brink, Uri S.; Lin, Jian

1995-01-01

We model the three-dimensional (3-D) crustal deformation in a deep pull-apart basin as a result of relative plate motion along a transform system and compare the results to the tectonics of the Dead Sea Basin. The brittle upper crust is modeled by a boundary element technique as an elastic block, broken by two en echelon semi-infinite vertical faults. The deformation is caused by a horizontal displacement that is imposed everywhere at the bottom of the block except in a stress-free “shear zone” in the vicinity of the fault zone. The bottom displacement represents the regional relative plate motion. Results show that the basin deformation depends critically on the width of the shear zone and on the amount of overlap between basin-bounding faults. As the width of the shear zone increases, the depth of the basin decreases, the rotation around a vertical axis near the fault tips decreases, and the basin shape (the distribution of subsidence normalized by the maximum subsidence) becomes broader. In contrast, two-dimensional plane stress modeling predicts a basin shape that is independent of the width of the shear zone. Our models also predict full-graben profiles within the overlapped region between bounding faults and half-graben shapes elsewhere. Increasing overlap also decreases uplift near the fault tips and rotation of blocks within the basin. We suggest that the observed structure of the Dead Sea Basin can be described by a 3-D model having a large overlap (more than 30 km) that probably increased as the basin evolved as a result of a stable shear motion that was distributed laterally over 20 to 40 km.

Seroconversion for west Nile and St. Louis encephalitis viruses among sentinel horses in Colombia

Directory of Open Access Journals (Sweden)

Salim Mattar

2011-12-01

Full Text Available We prospectively sampled flavivirus-naïve horses in northern Colombia to detect West Nile virus (WNV and St. Louis encephalitis virus (SLEV seroconversion events, which would indicate the current circulation of these viruses. Overall, 331 (34.1% of the 971 horses screened were positive for past infection with flaviviruses upon initial sampling in July 2006. During the 12-month study from July 2006-June 2007, 33 WNV seroconversions and 14 SLEV seroconversions were detected, most of which occurred in the department of Bolivar. The seroconversion rates of horses in Bolivar for the period of March-June 2007 reached 12.4% for WNV and 6.7% for SLEV. These results comprise the first serologic evidence of SLEV circulation in Colombia. None of the horses sampled developed symptoms of encephalitis within three years of initial sampling. Using seroconversions in sentinel horses, we demonstrated an active circulation of WNV and SLEV in northern Colombia, particularly in the department of Bolivar. The absence of WNV-attributed equine or human disease in Colombia and elsewhere in the Caribbean Basin remains a topic of debate and speculation.

DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

Directory of Open Access Journals (Sweden)

Július Rozák

2013-02-01

Full Text Available The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen and molecular diagnostic by mRT-PCR were applied. Five samples with Plum pox virus were infected. The two samples positive for Prunus necrotic ringspot virus and one sample for Prunus dwarf virus were confirmed. The two samples were found to be infected with two viruses Prunus necrotic ringspot virus and Prunus dwarf virus. This work focuses on two techniques, their application to the diagnosis of stone fruit viruses and their routinely used for sanitary and certification programmes.

Quantification and Postglacial evolution of an inner alpine sedimentary basin (Gradenmoos Basin, Hohe Tauern)

International Nuclear Information System (INIS)

Götz, J.

2012-01-01

The overall objective of this thesis is the quantification of sediment storage and the reconstruction of postglacial landscape evolution within the glacially overdeepened Gradenmoos Basin (subcatchment size: 4.1 km 2 ; basin floor elevation: 1920 m) in the central Gradenbach catchment (Schober Range, Hohe Tauern, Austrian Alps). Following the approach of denudation-accumulation-systems, most reliable results are obtained (1) if sediment output of a system can be neglected for an established period of time, (2) if sediment storage can be assessed with a high level of accuracy, (3) if the onset of sedimentation and amounts of initially stored sediments are known, and (4) if sediment contributing areas can be clearly delimited. Due to spatial scale and topographic characteristics, all mentioned aspects are fulfilled to a high degree within the studied basin. Applied methods include surface, subsurface and temporal investigations. Digital elevation data is derived from terrestrial laserscanning and geomorphologic mapping. The quantification of sediment storage is based on core drillings, geophysical methods (DC resistivity, refraction seismic, and ground penetrating radar), as well as GIS and 3D modelling. Radiocarbon dating and palynological analyses are additionally used to reconstruct the postglacial infilling progress of the basin. The study reveals that a continuous postglacial stratigraphic record is archived in the basin. As proposed by Lieb (1987) timing of basin deglaciation could be verified to late-Egesen times by means of radiocarbon ages (oldest sample just above basal till: 10.4 ka cal. BP) and first palynologic results. Lateglacial oscillations seem to have effectively scoured the basin, leaving only a shallow layer of basal till. The analysis of postglacial sedimentation in the basin is further improved by the existence of a former lake in the basin lasting for up to 7500 years until approx. 3.7 ka cal. BP. Both, the stratigraphic (fine, partly

Stratigraphy of the Caloris Basin, Mercury: Implications for Volcanic History and Basin Impact Melt

Science.gov (United States)

Ernst, Carolyn M.; Denevi, Brett W.; Barnouin, Olivier S.; Klimczak, Christian; Chabot, Nancy L.; Head, James W.; Murchie, Scott L.; Neumann, Gregory A.; Prockter, Louis M.; Robinson, Mark S.;

[Infection by hepatitis virus among the indigenous populations of South America: a review of the problem].

Science.gov (United States)

Echevarría, J M; Blitz-Dorfman, L; Pujot, F H

1996-09-01

After the report of the epidemic outbreak of delta hepatitis among the Yukpa amerindians in the early 80s, the viral hepatitis arose as an important health problem in all the Amerindian communities from the north of South America and the Amazonian Basin. Despite the few data available, the results obtained in different communities from Venezuela (Yukpa, Barí, Yanomami) have shown a high endemicity of hepatitis B and D virus infections and a significant prevalence of hepatitis E virus-specific antibody among their members. By contrast, the infection by hepatitis C virus, which is present in all the urban areas from South America, seems uncommon, or even absent among some Amerindian populations. At the moment, a satisfactory explanation for this findings has not yet been arised. However, it could be possible that the margination of these populations regarding the health care system has been keeping them free of an infection largely linked worldwide to iatrogeny. Vaccination of Amerindian populations against hepatitis B should be taken as a priority of the health care programs. Moreover, such programs should consider the iatrogenic transmission of the HCV as a matter of concern regarding such populations, since parenterally transmitted hepatitis viruses seems to spread quickly among their members once they are introduced, giving rise to serious health problems.

Tectonic setting of Cretaceous basins on the NE Tibetan Plateau: Insights from the Jungong basin

Science.gov (United States)

Craddock, W.H.; Kirby, E.; Dewen, Z.; Jianhui, L.

2012-01-01

Quantifying the Cenozoic growth of high topography in the Indo-Asian collision zone remains challenging, due in part to significant shortening that occurred within Eurasia before collision. A growing body of evidence suggests that regions far removed from the suture zone experienced deformation before and during the early phases of Himalayan orogenesis. In the present-day north-eastern Tibetan Plateau, widespread deposits of Cretaceous sediment attest to significant basin formation; however, the tectonic setting of these basins remains enigmatic. We present a study of a regionally extensive network of sedimentary basins that are spatially associated with a system of SE-vergent thrust faults and are now exposed in the high ranges of the north-eastern corner of the Tibetan Plateau. We focus on a particularly well-exposed basin, located ~20km north of the Kunlun fault in the Anyemaqen Shan. The basin is filled by ~900m of alluvial sediments that become finer-grained away from the basin-bounding fault. Additionally, beds in the proximal footwall of the basin-bounding fault exhibit progressive, up-section shallowing and several intraformational unconformities which can be traced into correlative conformities in the distal part of the basin. The observations show sediment accumulated in the basin during fault motion. Regional constraints on the timing of sediment deposition are provided by both fossil assemblages from the Early Cretaceous, and by K-Ar dating of volcanic rocks that floor and cross-cut sedimentary fill. We argue that during the Cretaceous, the interior NE Tibetan Plateau experienced NW-SE contractional deformation similar to that documented throughout the Qinling-Dabie orogen to the east. The Songpan-Ganzi terrane apparently marked the southern limit of this deformation, such that it may have been a relatively rigid block in the Tibetan lithosphere, separating regions experiencing deformation north of the convergent Tethyan margin from regions deforming

Sedimentary architecture of a Plio-Pleistocene proto-back-arc basin: Wanganui Basin, New Zealand

Science.gov (United States)

Proust, Jean-Noël; Lamarche, Geoffroy; Nodder, Scott; Kamp, Peter J. J.

2005-11-01

The sedimentary architecture of active margin basins, including back-arc basins, is known only from a few end-members that barely illustrate the natural diversity of such basins. Documenting more of these basins types is the key to refining our understanding of the tectonic evolution of continental margins. This paper documents the sedimentary architecture of an incipient back-arc basin 200 km behind the active Hikurangi subduction margin, North Island, New Zealand. The Wanganui Basin (WB) is a rapidly subsiding, Plio-Pleistocene sedimentary basin located at the southern termination of the extensional back-arc basin of the active Central Volcanic Region (TVZ). The WB is asymmetric with a steep, thrust-faulted, outer (arc-ward) margin and a gentle inner (craton-ward) margin. It contains a 4-km-thick succession of Plio-Pleistocene sediments, mostly lying offshore, composed of shelf platform sediments. It lacks the late molasse-like deposits derived from erosion of a subaerial volcanic arc and basement observed in classical back-arc basins. Detailed seismic stratigraphic interpretations from an extensive offshore seismic reflection data grid show that the sediment fill comprises two basin-scale mega-sequences: (1) a Pliocene (3.8 to 1.35 Ma), sub-parallel, regressive "pre-growth" sequence that overtops the uplifted craton-ward margin above the reverse Taranaki Fault, and (2) a Pleistocene (1.35 Ma to present), divergent, transgressive, "syn-growth" sequence that onlaps: (i) the craton-ward high to the west, and (ii) uplifted basement blocks associated with the high-angle reverse faults of the arc-ward margin to the east. Along strike, the sediments offlap first progressively southward (mega-sequence 1) and then southeastward (mega-sequence 2), with sediment transport funnelled between the craton- and arc-ward highs, towards the Hikurangi Trough through the Cook Strait. The change in offlap direction corresponds to the onset of arc-ward thrust faulting and the rise of

Misrepresenting the Jordan River Basin

Directory of Open Access Journals (Sweden)

Clemens Messerschmid

2015-06-01

Full Text Available This article advances a critique of the UN Economic and Social Commission for West Asia’s (ESCWA’s representation of the Jordan River Basin, as contained in its recently published Inventory of Shared Water Resources in Western Asia. We argue that ESCWA’s representation of the Jordan Basin is marked by serious technical errors and a systematic bias in favour of one riparian, Israel, and against the Jordan River’s four Arab riparians. We demonstrate this in relation to ESCWA’s account of the political geography of the Jordan River Basin, which foregrounds Israel and its perspectives and narratives; in relation to hydrology, where Israel’s contribution to the basin is overstated, whilst that of Arab riparians is understated; and in relation to development and abstraction, where Israel’s transformation and use of the basin are underplayed, while Arab impacts are exaggerated. Taken together, this bundle of misrepresentations conveys the impression that it is Israel which is the main contributor to the Jordan River Basin, Arab riparians its chief exploiters. This impression is, we argue, not just false but also surprising, given that the Inventory is in the name of an organisation of Arab states. The evidence discussed here provides a striking illustration of how hegemonic hydro-political narratives are reproduced, including by actors other than basin hegemons themselves.

Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV, Bovine Leukemia Virus (BLV, Human Papilloma Virus (HPV, and Epstein–Barr Virus (EBV

Directory of Open Access Journals (Sweden)

James S. Lawson

2018-01-01

Full Text Available BackgroundAlthough the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV, bovine leukemia virus (BLV, human papilloma viruses (HPVs, and Epstein–Barr virus (EBV-also known as human herpes virus type 4. Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence.The evidenceMMTV and human breast cancer—the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer—the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer—the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer—the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal.ConclusionThe influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV), Bovine Leukemia Virus (BLV), Human Papilloma Virus (HPV), and Epstein-Barr Virus (EBV).

Science.gov (United States)

Lawson, James S; Salmons, Brian; Glenn, Wendy K

2018-01-01

Although the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV), bovine leukemia virus (BLV), human papilloma viruses (HPVs), and Epstein-Barr virus (EBV-also known as human herpes virus type 4). Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence. MMTV and human breast cancer-the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer-the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer-the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer-the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal. The influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

Spatial Preference Heterogeneity for Integrated River Basin Management: The Case of the Shiyang River Basin, China

Directory of Open Access Journals (Sweden)

Fanus Asefaw Aregay

2016-09-01

Full Text Available Integrated river basin management (IRBM programs have been launched in most parts of China to ease escalating environmental degradation. Meanwhile, little is known about the benefits from and the support for these programs. This paper presents a case study of the preference heterogeneity for IRBM in the Shiyang River Basin, China, as measured by the Willingness to Pay (WTP, for a set of major restoration attributes. A discrete choice analysis of relevant restoration attributes was conducted. The results based on a sample of 1012 households in the whole basin show that, on average, there is significant support for integrated ecological restoration as indicated by significant WTP for all ecological attributes. However, residential location induced preference heterogeneities are prevalent. Generally, compared to upper-basin residents, middle sub-basin residents have lower mean WTP while lower sub-basin residents express higher mean WTP. The disparity in utility is partially explained by the difference in ecological and socio-economic status of the residents. In conclusion, estimating welfare benefit of IRBM projects based on sample responses from a specific sub-section of the basin only may either understate or overstate the welfare estimate.

Area environmental characterization report of the Dalhart and Palo Duro basins in the Texas Panhandle. Volume I. Dalhart Basin

International Nuclear Information System (INIS)

1982-09-01

This area report describes the environmental characteristics of the Dalhart and Palo Duro basins of the Texas Panhandle portion of the Permian basin. Both basins are rather sparsely populated, and the overall population is decreasing. The economic base is centered on agribusiness and manufacturing. Most of the potentially conflicting land uses in both basins (i.e., parks, historic sites) occupy small land areas, with the exception of a national grassland in the Dalhart and military air training routes in both basins. Ground transportation in the Dalhart basin is adequate, and it is well developed in the Palo Duro basin. In both basins irrigation constitutes the principal water use, and groundwater is the principal source. However, the dominant aquifer, the Ogallala, is being depleted. Both basins consist primarily of grasslands, rangelands, and agricultural areas. No critical terrestrial or aquatic habitats have been identified in the basins, though several endangered, threatened, or rare terrestrial species occur in or near the basins. Aquatic resources in both basins are limited because of the intermittent availability of water and the high salt content of some water bodies. Playa lakes are common, though usually seasonal or rain dependent. The climate of the area is semiarid, with low humidity, relatively high wind speeds, and highly variable prcipitation. Restrictive dispersion conditions are infrequent. National ambient secondary air quality standards for particulates are being exceeded in the area, largely because of fugitive dust, although there are some particulate point sources

Basin Analysis and Petroleum System Characterisation of Western Bredasdorp Basin, Southern Offshore of South Africa: Insights from a 3d Crust-Scale Basin Model - (Phase 1)

Science.gov (United States)

Sonibare, W. A.; Scheck-Wenderoth, M.; Sippel, J.; Mikeš, D.

2012-04-01

In recent years, construction of 3D geological models and their subsequent upscaling for reservoir simulation has become an important tool within the oil industry for managing hydrocarbon reservoirs and increasing recovery rate. Incorporating petroleum system elements (i.e. source, reservoir and trap) into these models is a relatively new concept that seems very promising to play/prospect risk assessment and reservoir characterisation alike. However, yet to be fully integrated into this multi-disciplinary modelling approach are the qualitative and quantitative impacts of crust-scale basin dynamics on the observed basin-fill architecture and geometries. The focus of this study i.e. Western Bredasdorp Basin constitutes the extreme western section of the larger Bredasdorp sub-basin, which is the westernmost depocentre of the four southern Africa offshore sub-basins (others being Pletmos, Gamtoos and Algoa). These basins, which appear to be initiated by volcanically influenced continental rifting and break-up related to passive margin evolution (during the Mid-Late Jurassic to latest Valanginian), remain previously unstudied for crust-scale basin margin evolution, and particularly in terms of relating deep crustal processes to depo-system reconstruction and petroleum system evolution. Seismic interpretation of 42 2D seismic-reflection profiles forms the basis for maps of 6 stratigraphic horizons which record the syn-rift to post-rift (i.e. early drift and late drift to present-day seafloor) successions. In addition to this established seismic markers, high quality seismic profiles have shown evidence for a pre-rift sequence (i.e. older than Late Jurassic >130 Ma). The first goal of this study is the construction of a 3D gravity-constrained, crust-scale basin model from integration of seismics, well data and cores. This basin model is constructed using GMS (in-house GFZ Geo-Modelling Software) while testing its consistency with the gravity field is performed using IGMAS

Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus

OpenAIRE

Savithri, HS; Murthy, MRN

1983-01-01

The amino acid sequences of the non-structural protein (molecular weight 35,000; 3a protein) from three plant viruses - cucumber mosaic, brome mosaic and alfalfa mosaic have been systematically compared using the partial genomic sequences for these three viruses already available. The 3a protein of cucumber mosaic virus has an amino acid sequence homology of 33.7% with the corresponding protein of brome mosaic virus. A similar protein from alfalfa mosaic virus has a homology of 18.2% and 14.2...

The evolution and performance of river basin management in the Murray-Darling Basin

Directory of Open Access Journals (Sweden)

Andrew Ross

2016-09-01

Full Text Available We explore bioregional management in the Murray-Darling Basin (MDB in Australia through the institutional design characteristics of the MDB River Basin Organization (RBO, the actors and organizations who supported and resisted the establishment of the RBO, and the effectiveness of the RBO. During the last 25 years, there has been a major structural reform in the MDB RBO, which has changed from an interstate coordinating body to an Australian government agency. Responsibility for basin management has been centralized under the leadership of the Australian government, and a comprehensive integrated Basin plan has been adopted. The driving forces for this centralization include national policy to restore river basins to sustainable levels of extraction, state government difficulties in reversing overallocation of water entitlements, the millennium drought and its effects, political expediency on the part of the Australian government and state governments, and a major injection of Australian government funding. The increasing hierarchy and centralization of the MDB RBO does not follow a general trend toward multilevel participative governance of RBOs, but decentralization should not be overstated because of the special circumstances at the time of the centralization and the continuing existence of some decentralized elements, such as catchment water plans, land use planning, and water quality. Further swings in the centralization-decentralization pendulum could occur. The MDB reform has succeeded in rebalancing Basin water allocations, including an allocation for the environment and reduced diversion limits. There are some longer term risks to the implementation of reform, including lack of cooperation by state governments, vertical coordination difficulties, and perceived reductions in the accountability and legitimacy of reform at the local level. If implementation of the Basin plan is diverted or delayed, a new institution, the Commonwealth

Sustaining Exploration in Mature Basins

International Nuclear Information System (INIS)

Bayo, A.

2002-01-01

Exploration is a business like any other business driven by opportunity, resources and expectation of profit. Therefore, exploration will thrive anywhere the opportunities are significant, the resources are available and the outlook for profit (or value creation) is good. To sustain exploration activities anywhere, irrespective of the environment, there must be good understanding of the drivers of these key investment criteria. This paper will examine these investment criteria as they relate to exploration business and address the peculiarity of exploration in mature basin. Mature basins are unique environment that lends themselves a mix of fears, paradigms and realities, particularly with respect to the perception of value. To sustain exploration activities in a mature basin, we need to understand these perceptions relative to the true drivers of profitability. Exploration in the mature basins can be as profitable as exploration in emerging basins if the dynamics of value definition-strategic and fiscal values are understood by operators, regulators and co ventures alike. Some suggestions are made in this presentation on what needs to be done in addressing these dynamic investment parameters and sustaining exploration activities in mature basins

L-Reactor 186-basin cleaning alternatives

International Nuclear Information System (INIS)

Turcotte, M.D.S.

1983-01-01

Operation of L Reactor will necessitate annual cleaning of the L Area 186 basins. Alternatives are presented for sediment discharge due to 186-basin cleaning activities as a basis for choosing the optimal cleaning method. Current cleaning activities (i.e. removal of accumulated sediments) for the P, C and K-Area 186 basins result in suspended solids concentrations in the effluent waters above the NPDES limits, requiring an exemption from the NPDES permit for these short-term releases. The objective of mitigating the 186-basin cleaning activities is to decrease the suspended solids concentrations to within permit limits while continuing satisfactory operation of the basins

Crustal characteristic variation in the central Yamato Basin, Japan Sea back-arc basin, deduced from seismic survey results

Science.gov (United States)

Sato, Takeshi; No, Tetsuo; Miura, Seiichi; Kodaira, Shuichi

2018-02-01

The crustal structure of the Yamato Bank, the central Yamato Basin, and the continental shelf in the southern Japan Sea back-arc basin is obtained based on a seismic survey using ocean bottom seismographs and seismic shot to elucidate the back-arc basin formation processes. The central Yamato Basin can be divided into three domains based on the crustal structure: the deep basin, the seamount, and the transition domains. In the deep basin domain, the crust without the sedimentary layer is about 12-13 km thick. Very few units have P-wave velocity of 5.4-6.0 km/s, which corresponds to the continental upper crust. In the seamount and transition domains, the crust without the sedimentary layer is about 12-16 km thick. The P-wave velocities of the upper and lower crusts differs among the deep basin, the seamount, and the transition domains. These results indicate that the central Yamato Basin displays crustal variability in different domains. The crust of the deep basin domain is oceanic in nature and suggests advanced back-arc basin development. The seamount domain might have been affected by volcanic activity after basin opening. In the transition domain, the crust comprises mixed characters of continental and oceanic crust. This crustal variation might represent the influence of different processes in the central Yamato Basin, suggesting that crustal development was influenced not only by back-arc opening processes but also by later volcanic activity. In the Yamato Bank and continental shelf, the upper crust has thickness of about 17-18 km and P-wave velocities of 3.3-4.1 to 6.6 km/s. The Yamato Bank and the continental shelf suggest a continental crustal character.

Neoproterozoic rift basins and their control on the development of hydrocarbon source rocks in the Tarim Basin, NW China

Science.gov (United States)

Zhu, Guang-You; Ren, Rong; Chen, Fei-Ran; Li, Ting-Ting; Chen, Yong-Quan

2017-12-01

The Proterozoic is demonstrated to be an important period for global petroleum systems. Few exploration breakthroughs, however, have been obtained on the system in the Tarim Basin, NW China. Outcrop, drilling, and seismic data are integrated in this paper to focus on the Neoproterozoic rift basins and related hydrocarbon source rocks in the Tarim Basin. The basin consists of Cryogenian to Ediacaran rifts showing a distribution of N-S differentiation. Compared to the Cryogenian basins, those of the Ediacaran are characterized by deposits in small thickness and wide distribution. Thus, the rifts have a typical dual structure, namely the Cryogenian rifting and Ediacaran depression phases that reveal distinct structural and sedimentary characteristics. The Cryogenian rifting basins are dominated by a series of grabens or half grabens, which have a wedge-shaped rapid filling structure. The basins evolved into Ediacaran depression when the rifting and magmatic activities diminished, and extensive overlapping sedimentation occurred. The distributions of the source rocks are controlled by the Neoproterozoic rifts as follows. The present outcrops lie mostly at the margins of the Cryogenian rifting basins where the rapid deposition dominates and the argillaceous rocks have low total organic carbon (TOC) contents; however, the source rocks with high TOC contents should develop in the center of the basins. The Ediacaran source rocks formed in deep water environment of the stable depressions evolving from the previous rifting basins, and are thus more widespread in the Tarim Basin. The confirmation of the Cryogenian to Ediacaran source rocks would open up a new field for the deep hydrocarbon exploration in the Tarim Basin.

Spent LWR fuel storage costs: reracking, AR basins, and AFR basins

International Nuclear Information System (INIS)

1980-01-01

Whenever possible, fuel storage requirements will be met by reracking existing reactor basins and/or transfer of fuel to available space in other reactor basins. These alternatives represent not only the lowest cost storage options but also the most timely. They are recognized to face environmental and regulatory obstacles. However, such obstacles should be less severe than those that would be encountered with AR or AFR basin storage. When storage requirements cannot be met by the first two options, the least costly alternative for most utilities will be use of a Federal AFR. Storage costs of $100,000 to $150,000 MTU at a AFR are less costly than charges of up to $320,000/MTU that could be incurred by the use of AR basins. AFR storage costs do not include transportation from the reactor to the AFR. This cost would be paid by the utility separately. Only when a utility requires annual storage capacity for 100 MTU of spent fuel can self-storage begin to compete with AFR costs. The large reactor complexes discharging these fuel quantities are not currently those that require relief from fuel storage problems

Geologic Basin Boundaries (Basins_GHGRP) GIS Layer

Data.gov (United States)

U.S. Environmental Protection Agency — This is a coverage shapefile of geologic basin boundaries which are used by EPA's Greenhouse Gas Reporting Program. For onshore production, the "facility" includes...

Hydroclimatology of the Missouri River basin

Science.gov (United States)

Wise, Erika K.; Woodhouse, Connie A.; McCabe, Gregory; Pederson, Gregory T.; St. Jacques, Jeannine-Marie

2018-01-01

Despite the importance of the Missouri River for navigation, recreation, habitat, hydroelectric power, and agriculture, relatively little is known about the basic hydroclimatology of the Missouri River basin (MRB). This is of particular concern given the droughts and floods that have occurred over the past several decades and the potential future exacerbation of these extremes by climate change. Here, observed and modeled hydroclimatic data and estimated natural flow records in the MRB are used to 1) assess the major source regions of MRB flow, 2) describe the climatic controls on streamflow in the upper and lower basins , and 3) investigate trends over the instrumental period. Analyses indicate that 72% of MRB runoff is generated by the headwaters in the upper basin and by the lowest portion of the basin near the mouth. Spring precipitation and temperature and winter precipitation impacted by changes in zonal versus meridional flow from the Pacific Ocean play key roles in surface water supply variability in the upper basin. Lower basin flow is significantly correlated with precipitation in late spring and early summer, indicative of Atlantic-influenced circulation variability affecting the flow of moisture from the Gulf of Mexico. Although increases in precipitation in the lower basin are currently overriding the effects of warming temperatures on total MRB flow, the upper basin’s long-term trend toward decreasing flows, reduction in snow versus rain fraction, and warming spring temperatures suggest that the upper basin may less often provide important flow supplements to the lower basin in the future.

Wind energy in Mediterranean Basin

International Nuclear Information System (INIS)

Gaudiosi, G.

1991-01-01

In its examination of wind energy potential in the Mediterranean Basin, this paper provides brief notes on the Basin's geography; indicates power production and demand; describes the area's wind characteristics and wind monitoring activities; illustrates wind velocity distributions; estimates local wind power production potential; reviews the Basin's wind energy marketing situation and each bordering country's wind energy programs; surveys installed wind energy farms; and assesses national research and commercialization efforts

STRATIGRAPHIC EVOLUTION, PALEOENVIRONMENTS AND HYDROCARBON POTENTIALS OF THE BENUE/DAHOMEY BASINS, NIGERIAN AND POTIGUAR/CEARA BASINS, NE BRAZIL

International Nuclear Information System (INIS)

Akande, S.O; Adekeye, O.A.; Oj, O.J; Erdtmann, B.D.; Koutsokous, E.I.

2004-01-01

The stratigraphy, facies relationship and paleoenvironment of selected West African and the Brazillian rift basins permit the recognition of at least two major petroleum systems apart from the prolific Niger Delta petroleum system. The Lower Cretaceous fluivio-lacustrine petroleum system and Upper Cretaceous to Lower Tertiary, marine dominated petroleum system. Our combined studies of the stratigraphic, structural framework, paleoenvironment and time-space relationships of the petroleum systems in the Benue/Dahomey and the Potiguar/Ceara basins indicated that rifting and subsequent drifting during the opening of the South Atlantic controlled subsidence, sediment deposition and facies associations in individual basins. Whereas in the Potiguar/Ceara basins, the best developed source rocks are within the Neomacin-Aptian fluvio- lacustrine sequence of the Pendencia and Alagamar Formations which generated reserved hydrocarbon in the Acu Formation, empirical evidence for this petroleum system in the contiguous Benue/Dahomey basins are only based on the geochemical characteristics of the lower parts of the Bima Formation and the Abeokuta Group. In contrast, the Upper Cretaceous-Lower Tertiary marine petroleum system, which is constrained by poor development of reservoirs in the Potiguar/Ceara basin is productive in the Benue/Dahomey basins where source rocks, reservoir and sealing facies occur at this interval. Considering the recent hydrocarbon discoveries of the East Niger basin, the Doba (southern Chad), the Muglad basin (southern Sudan) sourced from the fluvio-lacustrine rift sequences, we suggest that this petroleum system needs more detailed exploration and has some potentials in the Benue/Dahomey frontier basins

Area environmental characterization report of the Dalhart and Palo Duro basins in the Texas Panhandle. Volume II. Palo Duro basin

International Nuclear Information System (INIS)

1982-09-01

This area report describes the environmental characteristics of the Dalhart and Palo Duro basins of the Texas Panhandle portion of the Permian basin. Both basins are rather sparsely populated, and the overall population is decreasing. The economic base is centered on agribusiness and manufacturing. Most of the potentially conflicting land uses in both basins (i.e., parks, historic sites) occupy small land areas, with the exception of a national grassland in the Dalhart and military air training routes in both basins. Ground transportation in the Dalhart basin is adequate, and it is well developed in the Palo Duro basin. In both basins irrigation constitutes the principal water use, and groundwater is the principal source. However, the dominant aquifer, the Ogallala, is being depleted. Both basins consist primarily of grasslands, rangelands, and agricultural areas. No critical terrestrial or aquatic habitats have been identified in the basins, though several endangered, threatened, or rare terrestrial species occur in or near the basins. Aquatic resources in both basins are limited because of the intermittent availability of water and the high salt content of some water bodies. Playa lakes are common, though usually seasonal or rain dependent. The climate of the area is semiarid, with low humidity, relatively high wind speeds, and high variable precipitation. Restrictive dispersion conditions are infrequent. National ambient secondary air quality standards for particulates are being exceeded in the area, largely because of fugitive dust, although there are some particulate point sources

Comparative analysis of chrysanthemum transcriptome in response to three RNA viruses: Cucumber mosaic virus, Tomato spotted wilt virus and Potato virus X.

Science.gov (United States)

Choi, Hoseong; Jo, Yeonhwa; Lian, Sen; Jo, Kyoung-Min; Chu, Hyosub; Yoon, Ju-Yeon; Choi, Seung-Kook; Kim, Kook-Hyung; Cho, Won Kyong

2015-06-01

The chrysanthemum is one of popular flowers in the world and a host for several viruses. So far, molecular interaction studies between the chrysanthemum and viruses are limited. In this study, we carried out a transcriptome analysis of chrysanthemum in response to three different viruses including Cucumber mosaic virus (CMV), Tomato spotted wilt virus (TSWV) and Potato virus X (PVX). A chrysanthemum 135K microarray derived from expressed sequence tags was successfully applied for the expression profiles of the chrysanthemum at early stage of virus infection. Finally, we identified a total of 125, 70 and 124 differentially expressed genes (DEGs) for CMV, TSWV and PVX, respectively. Many DEGs were virus specific; however, 33 DEGs were commonly regulated by three viruses. Gene ontology (GO) enrichment analysis identified a total of 132 GO terms, and of them, six GO terms related stress response and MCM complex were commonly identified for three viruses. Several genes functioning in stress response such as chitin response and ethylene mediated signaling pathway were up-regulated indicating their involvement in establishment of host immune system. In particular, TSWV infection significantly down-regulated genes related to DNA metabolic process including DNA replication, chromatin organization, histone modification and cytokinesis, and they are mostly targeted to nucleosome and MCM complex. Taken together, our comparative transcriptome analysis revealed several genes related to hormone mediated viral stress response and DNA modification. The identified chrysanthemums genes could be good candidates for further functional study associated with resistant to various plant viruses.

The Minorca Basin: a buffer zone between the Valencia and Liguro-Provençal Basins (NW Mediterranean Sea)

Science.gov (United States)

Pellen, Romain; Aslanian, Daniel; Rabineau, Marina; Leroux, Estelle; Gorini, Christian; Silenziario, Carmine; Blanpied, Christian; Rubino, Jean-Loup

2017-04-01

The present-day compartmented Mediterranean physiography is inherited from the last 250 Ma kinematic plate evolution (Eurasian, Africa, Iberic and Nubia plates) which implied the formation of orogenic chains, polyphased basins, and morphological - geodynamic thresholds. The interactions between these entities are strongly debated in the North-Western Mediterranean area. Several Neogene reconstructions have been proposed for the Valencia basin depending of the basin segmentation where each model imply a different subsidence, sedimentary, and palaeo-environmental evolution. Our study propose a new kinematic model for the Valencia Basin (VB) that encompasses the sedimentary infill, vertical movement and basin segmentation. Detailed analyses of seismic profiles and boreholes in the VB reveal a differentiated basin, the Minorca Basin (MB), lying between the old Mesozoic Valencia Basin sensu strico (VBss) and the young Oligocene Liguro-Provencal Basin (LPB) (Pellen et al., 2016). The relationship between these basins is shown through the correlation of four Miocene-to-present-day megasequences. The Central and North Balearic Fracture Zones (CFZ and NBFZ) that border the MB represent two morphological and geodynamical thresholds that created an accommodation in steps between the three domains. Little to no horizontal Neogene movements have been found for the Ibiza and Majorca Islands and imply a vertical "sag" subsidence. In contrast, the counterclockwise movement of the Corso-Sardinian blocks induced a counterclockwise movement of the Minorca block towards the SE along the CFZ and NBFZ, during the exhumation of lower continental crust in the LPB. The South-Eastward Minorca block translation stops when the first atypical oceanic crust occurs. The influence of the Neogene Betic compressional phase is thus limited to the VBss on the basis of a different MB origin. This new understanding places the AlKaPeCa blocks northeastward of the present-day Alboran Area. Both NW-SE and

Hydrologic Sub-basins of Greenland

Data.gov (United States)

National Aeronautics and Space Administration — The Hydrologic Sub-basins of Greenland data set contains Geographic Information System (GIS) polygon shapefiles that include 293 hydrologic sub-basins of the...

Petroleum geology of the Palo Duro Basin, Texas Panhandle

International Nuclear Information System (INIS)

Rose, P.R.

1986-03-01

The Palo Duro Basin, Permian Basin, Texas is an asymmetric, relatively shallow, intracratonic basin in the southern Texas Panhandle filled mostly by Mississippian, Pennsylvanian, and Permian sedimentary rocks. Although deeper and prolific prolific petroleum-producing basins adjoin it on the north (Anadarko Basin), south (Midland Basin), and east (Hardeman Basin), the Palo Duro Basin has produced remarkably small amounts of oil and gas to date. This is all the more noteworthy because the sedimentary sequence and rock types of the basin are similar to those of the adjacent basins. Analyses of the stratigraphic succession and structural configuration of the Palo Duro Basin suggest that adequate reservoir rocks, top-seals, and geologic structures are present. Most of the structures formed early enough to have trapped hydrocarbons if they were migrating in the rock column. Although additional work is under way to properly address the question of the petroleum source rocks, generation, and migration, the general absence of production in the basin may relate to an overall deficiency in hydrocarbon generation within the basin. Geologic information in this report will form part of the basis for further analysis and conclusions on hydrocarbon potential in the Palo Duro Basin

Evolution of the Rembrandt impact basin on Mercury.

Science.gov (United States)

Watters, Thomas R; Head, James W; Solomon, Sean C; Robinson, Mark S; Chapman, Clark R; Denevi, Brett W; Fassett, Caleb I; Murchie, Scott L; Strom, Robert G

2009-05-01

MESSENGER's second Mercury flyby revealed a ~715-kilometer-diameter impact basin, the second-largest well-preserved basin-scale impact structure known on the planet. The Rembrandt basin is comparable in age to the Caloris basin, is partially flooded by volcanic plains, and displays a unique wheel-and-spoke-like pattern of basin-radial and basin-concentric wrinkle ridges and graben. Stratigraphic relations indicate a multistaged infilling and deformational history involving successive or overlapping phases of contractional and extensional deformation. The youngest deformation of the basin involved the formation of a approximately 1000-kilometer-long lobate scarp, a product of the global cooling and contraction of Mercury.

Miocene block uplift and basin formation in the Patagonian foreland: The Gastre Basin, Argentina

Science.gov (United States)

Bilmes, A.; D'Elia, L.; Franzese, J. R.; Veiga, G. D.; Hernández, M.

2013-08-01

The intraplate fault-block mountains and intermontane deposits of the Gastre Basin, which are recorded more than 550 km east of the Andean trench in central Patagonia, Argentina, are analyzed. The Gastre Basin is one of the largest Patagonian intermontane basins, limited by uplifted blocks strongly oblique to the Andean chain. It was originated by reverse faulting and inversion of pre-existing normal faults associated with a Mesozoic rift basin and defined by older crustal heterogeneities. The deformational event occurred during the middle Miocene, related to a short contractional episode (16.1-14.86 Ma), probably in response to an eastward migration of the Andean fold and thrust belt. During Pliocene to Quaternary times, neither younger fault-block uplifts nor reconfigurations of the basin occurred. Similarities between the study area and other parts of the Patagonian foreland - such as the presence of Miocene reverse or inversion tectonics, as well as the accommodation of the Miocene sedimentary successions - suggest that the Gastre Basin is part of a major late early to middle Miocene broken foreland system (i.e. the Patagonian broken foreland) that exhumed discrete fault-block mountains and generated contemporary basins along more than 950 km parallel to the Andean trench (i.e. between 40°00' and 48°00' south latitude). Based on recent studies on the southern Andean Margin, this continental-scale contractional episode may be the result of a flat-slab subduction segment. Nevertheless, such a hypothesis is very difficult to support when analyzing such a large flat subduction segment along the entire Patagonian trench. This suggests the need to consider alternative flat-slab trigger mechanisms or other factors in the generation of broken foreland systems.

5. Basin assessment and watershed analysis

Science.gov (United States)

Leslie M. Reid; Robert R. Ziemer

1994-01-01

Abstract - Basin assessment is an important component of the President's Forest Plan, yet it has received little attention. Basin assessments are intended both to guide watershed analyses by specifying types of issues and interactions that need to be understood, and, eventually, to integrate the results of watershed analyses occurring within a river basin....

A Basin Approach to a Hydrological Service Delivery System in the Amur River Basin

Directory of Open Access Journals (Sweden)

Sergei Borsch

2018-03-01

Full Text Available This paper presents the basin approach to the design, development, and operation of a hydrological forecasting and early warning system in a large transboundary river basin of high flood potential, where accurate, reliable, and timely available daily water-level and reservoir-inflow forecasts are essential for water-related economic and social activities (the Amur River basin case study. Key aspects of basin-scale system planning and implementation are considered, from choosing efficient forecast models and techniques, to developing and operating data-management procedures, to disseminating operational forecasts using web-GIS. The latter, making the relevant forecast data available in real time (via Internet, visual, and well interpretable, serves as a good tool for raising awareness of possible floods in a large region with transport and industrial hubs located alongside the Amur River (Khabarovsk, Komsomolsk-on-Amur.

Analysis of efficiency of pollution reduction measures in rural basin using MIKE Basin model. Case study: Olšava River Basin

Directory of Open Access Journals (Sweden)

Kaiglová Jana

2014-03-01

Full Text Available This paper presents the results of testing the applicability of the MIKE Basin model for simulating the efficiency of scenarios for reducing water pollution. The model has been tested on the Olšava River Basin (520 km2 which is a typical rural region with a heterogeneous mix of pollution sources with variable topography and land use. The study proved that the model can be calibrated successfully using even the limited amount of data typically available in rural basins. The scenarios of pollution reduction were based on implementation and intensification of municipal wastewater treatment and conversion of arable land on fields under the risk of soil erosion to permanent grassland. The application of simulation results of these scenarios with proposed measures proved decreasing concentrations in downstream monitoring stations. Due to the practical applicability of proposed measures, these could lead to fulfilment of the water pollution limits required by the Czech and EU legislation. However, there are factors of uncertainty that are discussed that may delay or limit the effect of adopted measures in small rural basins.

California Basin Studies (CaBS)

International Nuclear Information System (INIS)

Gorsline, D.S.

1991-01-01

The California Continental Borderland's present configuration dates from about 4 to 5 X 10 6 years Before Present (B.P.) and is the most recent of several configurations of the southern California margin that have evolved after the North America Plate over-rode the East Pacific Rise about 30 X 10 6 years ago. The present morphology is a series of two to three northwest-southeast trending rows of depressions separated by banks and insular ridges. Two inner basins, Santa Monica and San Pedro, have been the site for the Department of Energy-funded California Basin Study (CaBS) Santa Monica and San Pedro Basins contain post-Miocene sediment thicknesses of about 2.5 and 1.5 km respectively. During the Holocene (past 10,000 years) about 10-12 m have accumulated. The sediment entered the basin by one or a combination of processes including particle infall (mainly as bioaggregates) from surface waters, from nepheloid plumes (surface, mid-depths and near-bottom), from turbidity currents, mass movements, and to a very minor degree direct precipitation. In Santa Monica Basin, during the last century, particle infall and nepheloid plume transport have been the most common processes. The former dominates in the central basin floor in water depths from 900 to 945 m. where a characteristic silt-clay with a typical mean diameter of about 0.006 mm, phi standard deviation

Basalt stratigraphy - Pasco Basin

International Nuclear Information System (INIS)

Waters, A.C.; Myers, C.W.; Brown, D.J.; Ledgerwood, R.K.

1979-10-01

The geologic history of the Pasco Basin is sketched. Study of the stratigraphy of the area involved a number of techniques including major-element chemistry, paleomagnetic investigations, borehole logging, and other geophysical survey methods. Grande Ronde basalt accumulation in the Pasco Basin is described. An illustrative log response is shown. 1 figure

Bottom water circulation in Cascadia Basin

Science.gov (United States)

Hautala, Susan L.; Paul Johnson, H.; Hammond, Douglas E.

2009-10-01

A combination of beta spiral and minimum length inverse methods, along with a compilation of historical and recent high-resolution CTD data, are used to produce a quantitative estimate of the subthermocline circulation in Cascadia Basin. Flow in the North Pacific Deep Water, from 900-1900 m, is characterized by a basin-scale anticyclonic gyre. Below 2000 m, two water masses are present within the basin interior, distinguished by different potential temperature-salinity lines. These water masses, referred to as Cascadia Basin Bottom Water (CBBW) and Cascadia Basin Deep Water (CBDW), are separated by a transition zone at about 2400 m depth. Below the depth where it freely communicates with the broader North Pacific, Cascadia Basin is renewed by northward flow through deep gaps in the Blanco Fracture Zone that feeds the lower limb of a vertical circulation cell within the CBBW. Lower CBBW gradually warms and returns to the south at lighter density. Isopycnal layer renewal times, based on combined lateral and diapycnal advective fluxes, increase upwards from the bottom. The densest layer, existing in the southeast quadrant of the basin below ˜2850 m, has an advective flushing time of 0.6 years. The total volume flushing time for the entire CBBW is 2.4 years, corresponding to an average water parcel residence time of 4.7 years. Geothermal heating at the Cascadia Basin seafloor produces a characteristic bottom-intensified temperature anomaly and plays an important role in the conversion of cold bottom water to lighter density within the CBBW. Although covering only about 0.05% of the global seafloor, the combined effects of bottom heat flux and diapycnal mixing within Cascadia Basin provide about 2-3% of the total required global input to the upward branch of the global thermohaline circulation.

Lithospheric-scale centrifuge models of pull-apart basins

Science.gov (United States)

Corti, Giacomo; Dooley, Tim P.

2015-11-01

We present here the results of the first lithospheric-scale centrifuge models of pull-apart basins. The experiments simulate relative displacement of two lithospheric blocks along two offset master faults, with the presence of a weak zone in the offset area localising deformation during strike-slip displacement. Reproducing the entire lithosphere-asthenosphere system provides boundary conditions that are more realistic than the horizontal detachment in traditional 1 g experiments and thus provide a better approximation of the dynamic evolution of natural pull-apart basins. Model results show that local extension in the pull-apart basins is accommodated through development of oblique-slip faulting at the basin margins and cross-basin faults obliquely cutting the rift depression. As observed in previous modelling studies, our centrifuge experiments suggest that the angle of offset between the master fault segments is one of the most important parameters controlling the architecture of pull-apart basins: the basins are lozenge shaped in the case of underlapping master faults, lazy-Z shaped in case of neutral offset and rhomboidal shaped for overlapping master faults. Model cross sections show significant along-strike variations in basin morphology, with transition from narrow V- and U-shaped grabens to a more symmetric, boxlike geometry passing from the basin terminations to the basin centre; a flip in the dominance of the sidewall faults from one end of the basin to the other is observed in all models. These geometries are also typical of 1 g models and characterise several pull-apart basins worldwide. Our models show that the complex faulting in the upper brittle layer corresponds at depth to strong thinning of the ductile layer in the weak zone; a rise of the base of the lithosphere occurs beneath the basin, and maximum lithospheric thinning roughly corresponds to the areas of maximum surface subsidence (i.e., the basin depocentre).

The role of Mesozoic sedimentary basin tapers on the formation of Cenozoic crustal shortening structures and foredeep in the western Sichuan Basin, China

Science.gov (United States)

Wang, M.

2017-12-01

The foreland basin records important clues of tectonic and sedimentary process of mountain-building, thus to explore its dynamic mechanism on the formation is an important issue of the mountain-basin interaction. The Longmen Shan fold-and-thrust belt and its adjacent Sichuan basin located in the eastern margin of Tibetan Plateau, are one of the most-concerned regions of studying modern mountain-building and seismic process, and are also a natural laboratory of studying the dynamics of the formation and development of foreland basin. However, it still need further explore on the mechanics of the development of the Cenozoic foreland basin and thrust-belts in the western Sichuan Basin. The Longmen Shan thrust belt has experienced multi-stages of tectonics evolution, foreland basin formation and topography growth since Late Triassic, and whether the early formed basin architecture and large Mesozoic sedimentary basin taper can influence the formation and development of the Cenozoic foreland basin and thrust belts? To solve these issues, this project aim to focus on the Cenozoic foreland basin and internal crustal shortening structures in the western Sichuan basin, on the basis of growth critical wedge taper theory. We will reconstruct the shape of multi-phases of sedimentary basin tapers, the temporal-spatial distribution of crustal shortening and thrusting sequences, and analyze the control mechanism of Mesozoic sedimentary basin taper on the formation of Cenozoic foreland basins, and final explore the interaction between the tectonics geomorphology, stress field and dynamic propagation of foreland basin.

Competitive virus assay method for titration of noncytopathogenic bovine viral diarrhea viruses (END⁺ and END⁻ viruses).

Science.gov (United States)

Muhsen, Mahmod; Ohi, Kota; Aoki, Hiroshi; Ikeda, Hidetoshi; Fukusho, Akio

2013-03-01

A new, reliable and secure virus assay method, named the competitive virus assay (CVA) method, has been established for the titration of bovine viral diarrhea viruses (BVDVs) that either show the exaltation of Newcastle disease virus (END) phenomenon or heterologous interference phenomenon (but not the END phenomenon). This method is based on the principle of (1) homologous interference between BVDVs, by using BVDV RK13/E(-) or BVDV RK13/E(+) strains as competitor virus, and (2) END phenomenon and heterologous interference, by using attenuated Newcastle disease virus (NDV) TCND strain as challenge virus. In titration of BVDV END(+) and BVDV END(-) viruses, no significant difference in estimated virus titer was observed between CVA and conventional methods. CVA method demonstrated comparable levels of sensitivity and accuracy as conventional END and interference methods, which require the use of a velogenic Miyadera strain of NDV and vesicular stomatitis virus (VSV), both of which are agents of high-risk diseases. As such, the CVA method is a safer alternative, with increased bio-safety and bio-containment, through avoidance of virulent strains that are commonly employed with conventional methods. Copyright © 2012 Elsevier B.V. All rights reserved.

On the significance of ELF basins

Indian Academy of Sciences (India)

Unknown

to complement to chemical intuition (see, e.g., refs. 2, 3). In a mathematically more rigorous way, such regions, ELF basins,4 were defined following the spirit of Bader's Atoms in Molecules (AIM). All points in space which lead to the a given maximum of ELF, by following the gradient of ELF, belong to the same basin. Basins ...

Transient electromagnetic study of basin fill sediments in the Upper San Pedro Basin, Mexico

Science.gov (United States)

Bultman, M.W.; Gray, F.

2011-01-01

The Upper San Pedro River Basin in Mexico and the United States is an important riparian corridor that is coming under increasing pressure from growing populations and the associated increase in groundwater withdrawal. Several studies have produced three-dimensional maps of the basin fill sediments in the US portion of the basin but little work has been done in the Mexican portion of the basin. Here, the results of a ground-based transient electromagnetic (TEM) survey in the Upper San Pedro Basin, Mexico are presented. These basin fill sediments are characterized by a 10-40 m deep unsaturated surficial zone which is composed primarily of sands and gravels. In the central portion of the basin this unsaturated zone is usually underlain by a shallow clay layer 20-50 m thick. Beneath this may be more clay, as is usually the case near the San Pedro River, or interbedded sand, silt, and clay to a depth of 200-250 m. As you move away from the river, the upper clay layer disappears and the amount of sand in the sediments increases. At 1-2 km away from the river, sands can occupy up to 50% of the upper 200-250 m of the sediment fill. Below this, clays are always present except where bedrock highs are observed. This lower clay layer begins at a depth of about 200 m in the central portion of the basin (250 m or more at distances greater than 1-2 km from the river) and extends to the bottom of most profiles to depths of 400 m. While the depth of the top of this lower clay layer is probably accurate, its thickness observed in the models may be overestimated due to the relatively low magnetic moment of the TEM system used in this study. The inversion routine used for interpretation is based on a one-dimensional geologic model. This is a layer based model that is isotropic in both the x and y directions. Several survey soundings did not meet this requirement which invalidates the inversion process and the resulting interpretation at these locations. The results from these

BasinVis 1.0: A MATLAB®-based program for sedimentary basin subsidence analysis and visualization

Science.gov (United States)

Lee, Eun Young; Novotny, Johannes; Wagreich, Michael

2016-06-01

Stratigraphic and structural mapping is important to understand the internal structure of sedimentary basins. Subsidence analysis provides significant insights for basin evolution. We designed a new software package to process and visualize stratigraphic setting and subsidence evolution of sedimentary basins from well data. BasinVis 1.0 is implemented in MATLAB®, a multi-paradigm numerical computing environment, and employs two numerical methods: interpolation and subsidence analysis. Five different interpolation methods (linear, natural, cubic spline, Kriging, and thin-plate spline) are provided in this program for surface modeling. The subsidence analysis consists of decompaction and backstripping techniques. BasinVis 1.0 incorporates five main processing steps; (1) setup (study area and stratigraphic units), (2) loading well data, (3) stratigraphic setting visualization, (4) subsidence parameter input, and (5) subsidence analysis and visualization. For in-depth analysis, our software provides cross-section and dip-slip fault backstripping tools. The graphical user interface guides users through the workflow and provides tools to analyze and export the results. Interpolation and subsidence results are cached to minimize redundant computations and improve the interactivity of the program. All 2D and 3D visualizations are created by using MATLAB plotting functions, which enables users to fine-tune the results using the full range of available plot options in MATLAB. We demonstrate all functions in a case study of Miocene sediment in the central Vienna Basin.

BASIN ANALYSIS AND PETROLEUM SYSTEM CHARACTERIZATION AND MODELING, INTERIOR SALT BASINS, CENTRAL AND EASTERN GULF OF MEXICO

Energy Technology Data Exchange (ETDEWEB)

Ernest A. Mancini; Donald A. Goddard; Ronald K. Zimmerman

2005-05-10

The principal research effort for Year 2 of the project has been data compilation and the determination of the burial and thermal maturation histories of the North Louisiana Salt Basin and basin modeling and petroleum system identification. In the first nine (9) months of Year 2, the research focus was on the determination of the burial and thermal maturation histories, and during the remainder of the year the emphasis has basin modeling and petroleum system identification. Existing information on the North Louisiana Salt Basin has been evaluated, an electronic database has been developed, regional cross sections have been prepared, structure and isopach maps have been constructed, and burial history, thermal maturation history and hydrocarbon expulsion profiles have been prepared. Seismic data, cross sections, subsurface maps and related profiles have been used in evaluating the tectonic, depositional, burial and thermal maturation histories of the basin. Oil and gas reservoirs have been found to be associated with salt-supported anticlinal and domal features (salt pillows, turtle structures and piercement domes); with normal faulting associated with the northern basin margin and listric down-to-the-basin faults (state-line fault complex) and faulted salt features; and with combination structural and stratigraphic features (Sabine and Monroe Uplifts) and monoclinal features with lithologic variations. Petroleum reservoirs are mainly Upper Jurassic and Lower Cretaceous fluvial-deltaic sandstone facies and Lower Cretaceous and Upper Cretaceous shoreline, marine bar and shallow shelf sandstone facies. Cretaceous unconformities significantly contribute to the hydrocarbon trapping mechanism capacity in the North Louisiana Salt Basin. The chief petroleum source rock in this basin is Upper Jurassic Smackover lime mudstone beds. The generation of hydrocarbons from Smackover lime mudstone was initiated during the Early Cretaceous and continued into the Tertiary

Western Gas Sands Project. Quarterly Basin Activities Report

Energy Technology Data Exchange (ETDEWEB)

Atkinson, C H

1979-01-31

This report is a summation of 3 months' drilling and testing activities in the four primary WGSP study areas: Greater Green River Basin, Northern Great Plains Province, Piceance Basin, and Uinta Basin. The monitoring of basin activities is part of resource assessment. (DLC)

New effective chemically synthesized anti-smallpox compound NIOCH-14.

Science.gov (United States)

Mazurkov, Oleg Yu; Kabanov, Alexey S; Shishkina, Larisa N; Sergeev, Alexander A; Skarnovich, Maksim O; Bormotov, Nikolay I; Skarnovich, Maria A; Ovchinnikova, Alena S; Titova, Ksenya A; Galahova, Darya O; Bulychev, Leonid E; Sergeev, Artemiy A; Taranov, Oleg S; Selivanov, Boris A; Tikhonov, Alexey Ya; Zavjalov, Evgenii L; Agafonov, Alexander P; Sergeev, Alexander N

2016-05-01

Antiviral activity of the new chemically synthesized compound NIOCH-14 (a derivative of tricyclodicarboxylic acid) in comparison with ST-246 (the condensed derivative of pyrroledione) was observed in experiments in vitro and in vivo using orthopoxviruses including highly pathogenic ones. After oral administration of NIOCH-14 to outbred ICR mice infected intranasally with 100 % lethal dose of ectromelia virus, it was shown that 50 % effective doses of NIOCH-14 and ST-246 did not significantly differ. The 'therapeutic window' varied from 1 day before infection to 6 days post-infection (p.i.) to achieve 100-60 % survival rate. The administration of NIOCH-14 and ST-246 to mice resulted in a significant reduction of ectromelia virus titres in organs examined as compared with the control and also reduced pathological changes in the lungs 6 days p.i. Oral administration of NIOCH-14 and ST-246 to ICR mice and marmots challenged with monkeypox virus as compared with the control resulted in a significant reduction of virus production in the lungs and the proportion of infected mice 7 days p.i. as well as the absence of disease in marmots. Significantly lower proportions of infected mice and virus production levels in the lungs as compared with the control were demonstrated in experiments after oral administration of NIOCH-14 and ST-246 to ICR mice and immunodeficient SCID mice challenged with variola virus 3 and 4 days p.i., respectively. The results obtained suggest good prospects for further study of the chemical compound NIOCH-14 to create a new smallpox drug on its basis.

New TNX Seepage Basin: Environmental information document

International Nuclear Information System (INIS)

Dunaway, J.K.W.; Johnson, W.F.; Kingley, L.E.; Simmons, R.V.; Bledsoe, H.W.

1986-12-01

The New TNX Seepage Basin has been in operation at the Savannah River Plant (SRP) since 1980 and is located in the southeastern section of the TNX facility. The basin receives waste from pilot scale tests conducted at TNX in support of the Defense Waste Processing Facility (DWPF) and the plant Separations area. The basin is scheduled for closure after the TNX Effluent Treatment Plant (ETP) begins operation. The basin will be closed pursuant to all applicable state and federal regulations. A statistical analysis of monitoring data indicates elevated levels of sodium and zinc in the groundwater at this site. Closure options considered for the New TNX Seepage Basin include waste removal and closure, no waste removal and closure, and no action. The two predominant pathways for human exposure to chemical contaminants are through surface, subsurface, and atmospheric transport. Modeling calculations were made to determine the risks to human population via these general pathways for the three postulated closure options for the New TNX Seepage Basin. Cost estimates for each closure option at the basin have also been prepared. An evaluation of the environmental impacts from the New TNX Seepage Basin indicate that the relative risks to human health and ecosystems for the postulated closure options are low. The transport of six chemical and one radionuclide constituents through the environmental pathways from the basin were modeled. The maximum chemical carcinogenic risk and the noncarcinogenic risk for the groundwater pathways were from exposure to trichloromethane and nitrate

Supplementary information on K-Basin sludges

International Nuclear Information System (INIS)

MAKENAS, B.J.

1999-01-01

Three previous documents in this series have been published covering the analysis of: K East Basin Floor and Pit Sludge, K East Basin Canister Sludge, and K West Basin Canister Sludge. Since their publication, additional data have been acquired and analyses performed. It is the purpose of this volume to summarize the additional insights gained in the interim time period

Virus wars: using one virus to block the spread of another

Directory of Open Access Journals (Sweden)

Matthew L. Paff

2016-06-01

Full Text Available The failure of traditional interventions to block and cure HIV infections has led to novel proposals that involve treating infections with therapeutic viruses–infectious viruses that specifically inhibit HIV propagation in the host. Early efforts in evaluating these proposals have been limited chiefly to mathematical models of dynamics, for lack of suitable empirical systems. Here we propose, develop and analyze an empirical system of a therapeutic virus that protects a host cell population against a lethal virus. The empirical system uses E. coli bacteria as the host cell population, an RNA phage as the lethal virus and a filamentous phage as the therapeutic virus. Basic dynamic properties are established for each virus alone and then together. Observed dynamics broadly agree with those predicted by a computer simulation model, although some differences are noted. Two cases of dynamics are contrasted, differing in whether the therapeutic virus is introduced before the lethal virus or after the lethal virus. The therapeutic virus increases in both cases but by different mechanisms. With the therapeutic virus introduced first, it spreads infectiously without any appreciable change in host dynamics. With the therapeutic virus introduced second, host abundance is depressed at the time therapy is applied; following an initial period of therapeutic virus spread by infection, the subsequent rise of protection is through reproduction by hosts already protected. This latter outcome is due to inheritance of the therapeutic virus state when the protected cell divides. Overall, the work establishes the feasibility and robustness to details of a viral interference using a therapeutic virus.

Strike-slip tectonics and Quaternary basin formation along the Vienna Basin fault system inferred from Bouguer gravity derivatives

NARCIS (Netherlands)

Salcher, B. C.; Meurers, B.; Smit, J.; Decker, K.; HöLzel, M.; Wagreich, M.

2012-01-01

The Vienna Basin at the transition between the Alpine and Carpathian belt hosts a number of large Pleistocene sub-basins forming along an active continental scale strike-slip fault (Vienna Basin strike-slip fault). We utilize first-order derivatives from industrial Bouguer gravity data to unravel

Therapeutic Vaccines and Antibodies for Treatment of Orthopoxvirus Infections

Directory of Open Access Journals (Sweden)

Stuart N. Isaacs

2010-10-01

Full Text Available Despite the eradication of smallpox several decades ago, variola and monkeypox viruses still have the potential to become significant threats to public health. The current licensed live vaccinia virus-based smallpox vaccine is extremely effective as a prophylactic vaccine to prevent orthopoxvirus infections, but because of safety issues, it is no longer given as a routine vaccine to the general population. In the event of serious human orthopoxvirus infections, it is important to have treatments available for individual patients as well as their close contacts. The smallpox vaccine and vaccinia immune globulin (VIG were used in the past as therapeutics for patients exposed to smallpox. VIG was also used in patients who were at high risk of developing complications from smallpox vaccination. Thus post-exposure vaccination and VIG treatments may again become important therapeutic modalities. This paper summarizes some of the historic use of the smallpox vaccine and immunoglobulins in the post-exposure setting in humans and reviews in detail the newer animal studies that address the use of therapeutic vaccines and immunoglobulins in orthopoxvirus infections as well as the development of new therapeutic monoclonal antibodies.

Zika virus disease

Directory of Open Access Journals (Sweden)

Adel I Al-Afaleq

2017-01-01

Full Text Available The Zika virus is an arbovirus belonging to the virus family Flaviviridae. The virus was isolated in 1947 from a rhesus monkey in the Zika Forest of Uganda. The virus causes sporadic mild human infections in Africa and later in Asia. However, by 2007 a major shift in its infection pattern was noticed and thousands of human infections were reported in the State of Yap and Federated States of Micronesia. In the last 3 years, major outbreaks have continued to occur and the virus has spread to several Pacific and American countries. These outbreaks were mostly asymptomatic; however, there were more severe clinical signs associated with the infections. Those signs included microcephaly and Guillain–Barre syndrome. It is believed that various species of mosquitoes can biologically transmit the virus. However, Aedes aegypti is most widely associated with the Zika virus. Recently, new modes of virus transmission have been reported, including mother-to-fetus, sexual, blood transfusion, animal bites, laboratory exposure and breast milk. Differential diagnosis is very important as some other arboviruses such as yellow fever virus, West Nile virus, dengue virus, and chikungunya virus have similar clinical manifestations to the Zika virus infection as well as relating serologically to some of these viruses. Established laboratory diagnostic tests to detect the Zika virus are limited, with reverse transcription polymerase chain reaction being the most widely used test. Taking into consideration the quickness of the spread of infection, size of the infected population and change of the infection severity pattern, the Zika virus infection merits collective efforts on all levels to prevent and control the disease. Limited research work and data, concurrent infection with other arboviruses, involvement of biological vectors, mass crowd events, human and trade movements and lack of vaccines are some of the challenges that we face in our efforts to prevent and

Dengue virus receptor

OpenAIRE

Hidari, Kazuya I.P.J.; Suzuki, Takashi

2011-01-01

Dengue virus is an arthropod-borne virus transmitted by Aedes mosquitoes. Dengue virus causes fever and hemorrhagic disorders in humans and non-human primates. Direct interaction of the virus introduced by a mosquito bite with host receptor molecule(s) is crucial for virus propagation and the pathological progression of dengue diseases. Therefore, elucidation of the molecular mechanisms underlying the interaction between dengue virus and its receptor(s) in both humans and mosquitoes is essent...

Characteristic mega-basin water storage behavior using GRACE.

Science.gov (United States)

Reager, J T; Famiglietti, James S

2013-06-01

[1] A long-standing challenge for hydrologists has been a lack of observational data on global-scale basin hydrological behavior. With observations from NASA's Gravity Recovery and Climate Experiment (GRACE) mission, hydrologists are now able to study terrestrial water storage for large river basins (>200,000 km 2 ), with monthly time resolution. Here we provide results of a time series model of basin-averaged GRACE terrestrial water storage anomaly and Global Precipitation Climatology Project precipitation for the world's largest basins. We address the short (10 year) length of the GRACE record by adopting a parametric spectral method to calculate frequency-domain transfer functions of storage response to precipitation forcing and then generalize these transfer functions based on large-scale basin characteristics, such as percent forest cover and basin temperature. Among the parameters tested, results show that temperature, soil water-holding capacity, and percent forest cover are important controls on relative storage variability, while basin area and mean terrain slope are less important. The derived empirical relationships were accurate (0.54 ≤  E f  ≤ 0.84) in modeling global-scale water storage anomaly time series for the study basins using only precipitation, average basin temperature, and two land-surface variables, offering the potential for synthesis of basin storage time series beyond the GRACE observational period. Such an approach could be applied toward gap filling between current and future GRACE missions and for predicting basin storage given predictions of future precipitation.

In situ characterization of Hanford K Basins fuel

Energy Technology Data Exchange (ETDEWEB)

Pitner, A.L.

1998-01-06

Irradiated N Reactor uranium metal fuel is stored underwater in the Hanford K East and K West Basins. In K East Basin, fuel is stored in open canisters and defected fuel is free to react with the basin water. In K West Basin, the fuel is stored in sealed canisters filled with water containing a corrosion inhibitor (potassium nitrite). To gain a better understanding of the physical condition of the fuel in these basins, visual surveys using high resolution underwater cameras were conducted. The inspections included detailed lift and look examinations of a number of fuel assemblies from selected canisters in each basin. These examinations formed the bases for selecting specific fuel elements for laboratory testing and analyses as prescribed in the characterization plan for Hanford K Basin Spent Nuclear Fuel.

105-KE basin pilot run relocation

International Nuclear Information System (INIS)

Crystal, J.B.

1994-01-01

The purpose of this document is to present the bases for selecting the exact in-facility location for installation of process equipment to support pilot testing activities in the 105-KE Basin at the United States Department of Energy Hanford Site, in southeastern Washington State. The 105-KE Basin was constructed during the early 1950s, as an integralcomponent of the 105-K East reactor building. Similar basins were provided in all Hanford weapons production reactor buildings to receive fuel elements discharged from the reactors and stage them for rail transport to 200 Area fuel reprocessing plants. The 105-KE reactor began operation in 1955. It was shut down in 1971. However, the 105-KE Basin was reactivated several years later to store spent fuel from the N-Reactor basin and permit its continued operation during outages at the Plutonium Uranium Extraction (PUREX) plant in the 200E Area

Klamath River Basin water-quality data

Science.gov (United States)

Smith, Cassandra D.; Rounds, Stewart A.; Orzol, Leonard L.; Sobieszczyk, Steven

2018-05-29

The Klamath River Basin stretches from the mountains and inland basins of south-central Oregon and northern California to the Pacific Ocean, spanning multiple climatic regions and encompassing a variety of ecosystems. Water quantity and water quality are important topics in the basin, because water is a critical resource for farming and municipal use, power generation, and for the support of wildlife, aquatic ecosystems, and endangered species. Upper Klamath Lake is the largest freshwater lake in Oregon (112 square miles) and is known for its seasonal algal blooms. The Klamath River has dams for hydropower and the upper basin requires irrigation water to support agriculture and grazing. Multiple species of endangered fish inhabit the rivers and lakes, and the marshes are key stops on the Pacific flyway for migrating birds. For these and other reasons, the water resources in this basin have been studied and monitored to support their management distribution.

Basin-scale simulation of current and potential climate changed hydrologic conditions in the Lake Michigan Basin, United States

Science.gov (United States)

Christiansen, Daniel E.; Walker, John F.; Hunt, Randall J.

2014-01-01

The Great Lakes Restoration Initiative (GLRI) is the largest public investment in the Great Lakes in two decades. A task force of 11 Federal agencies developed an action plan to implement the initiative. The U.S. Department of the Interior was one of the 11 agencies that entered into an interagency agreement with the U.S. Environmental Protection Agency as part of the GLRI to complete scientific projects throughout the Great Lakes basin. The U.S. Geological Survey, a bureau within the Department of the Interior, is involved in the GLRI to provide scientific support to management decisions as well as measure progress of the Great Lakes basin restoration efforts. This report presents basin-scale simulated current and forecast climatic and hydrologic conditions in the Lake Michigan Basin. The forecasts were obtained by constructing and calibrating a Precipitation-Runoff Modeling System (PRMS) model of the Lake Michigan Basin; the PRMS model was calibrated using the parameter estimation and uncertainty analysis (PEST) software suite. The calibrated model was used to evaluate potential responses to climate change by using four simulated carbon emission scenarios from eight general circulation models released by the World Climate Research Programme’s Coupled Model Intercomparison Project phase 3. Statistically downscaled datasets of these scenarios were used to project hydrologic response for the Lake Michigan Basin. In general, most of the observation sites in the Lake Michigan Basin indicated slight increases in annual streamflow in response to future climate change scenarios. Monthly streamflows indicated a general shift from the current (2014) winter-storage/snowmelt-pulse system to a system with a more equally distributed hydrograph throughout the year. Simulated soil moisture within the basin illustrates that conditions within the basin are also expected to change on a monthly timescale. One effect of increasing air temperature as a result of the changing

A proposal for an administrative set up of river basin management in the Sittaung River Basin

OpenAIRE

Tun, Zaw Lwin; Ni, Bo; Tun, Sein; Nesheim, Ingrid

2016-01-01

The purpose of this report is to present a proposal for how an administrative approach based on River Basin Management can be implemented in Myanmar. The Sittaung River Basin has been used as an example area to investigate how the basin can be administered according to the IWRM principles of cooperation between the different sectors and the administrative units, including stakeholder involvement. Ministry of Natural Resource and Environmental Conservation, Myanmar Norwegian Ministry of For...

ECHO virus

Science.gov (United States)

... page: //medlineplus.gov/ency/article/001340.htm ECHO virus To use the sharing features on this page, please enable JavaScript. Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that can lead ...

Systematic impact assessment on inter-basin water transfer projects of the Hanjiang River Basin in China

Science.gov (United States)

Zhou, Yanlai; Guo, Shenglian; Hong, Xingjun; Chang, Fi-John

2017-10-01

China's inter-basin water transfer projects have gained increasing attention in recent years. This study proposes an intelligent water allocation methodology for establishing optimal inter-basin water allocation schemes and assessing the impacts of water transfer projects on water-demanding sectors in the Hanjiang River Basin of China. We first analyze water demands for water allocation purpose, and then search optimal water allocation strategies for maximizing the water supply to water-demanding sectors and mitigating the negative impacts by using the Standard Genetic Algorithm (SGA) and Adaptive Genetic Algorithm (AGA), respectively. Lastly, the performance indexes of the water supply system are evaluated under different scenarios of inter-basin water transfer projects. The results indicate that: the AGA with adaptive crossover and mutation operators could increase the average annual water transfer from the Hanjiang River by 0.79 billion m3 (8.8%), the average annual water transfer from the Changjiang River by 0.18 billion m3 (6.5%), and the average annual hydropower generation by 0.49 billion kW h (5.4%) as well as reduce the average annual unmet water demand by 0.40 billion m3 (9.7%), as compared with the those of the SGA. We demonstrate that the proposed intelligent water allocation schemes can significantly mitigate the negative impacts of inter-basin water transfer projects on the reliability, vulnerability and resilience of water supply to the demanding sectors in water-supplying basins. This study has a direct bearing on more intelligent and effectual water allocation management under various scenarios of inter-basin water transfer projects.

Evolution of sedimentary architecture in retro-foreland basin: Aquitaine basin example from Paleocene to lower Eocene.

Science.gov (United States)

Ortega, Carole; Lasseur, Eric; Guillocheau, François; Serrano, Olivier; Malet, David

2017-04-01

The Aquitaine basin located in south western Europe, is a Pyrenean retro-foreland basin. Two main phases of compression are recorded in this retro-foreland basin during the Pyrenean orogeny. A first upper Cretaceous phase corresponding to the early stage of the orogeny, and a second one usually related to a Pyrenean paroxysmal phase during the middle Eocene. During Paleocene to lower Eocene deformations are less pronounced, interpreted as a tectonically quiet period. The aim of the study is to better constrain the sedimentary system of the Aquitaine basin during this period of Paleocene-lower Eocene, in order to discuss the evolution of the sedimentary architecture in response of the Pyrenean compression. This work is based on a compilation of a large set of subsurface data (wells logs, seismic lines and cores logs) represented by isopachs and facies map. Three main cycles were identified during this structural quiet period: (1) The Danian cycle, is recorded by the aggradation of carbonate reef-rimmed platform. This platform is characterized by proximal facies (oncoid carbonate and mudstone with thalassinoides) to the north, which leads to distal deposit facies southern (pelagic carbonate with globigerina and slump facies) and present a significant thickness variation linked to the platform-slope-basin morphology. (2) The upper Selandian-Thanetian cycle follows a non-depositional/erosional surface associated with a Selandian hiatus. The base of this cycle marked the transition between the last reef rimmed platform and a carbonate ramp. The transgressive cycle is characterized by proximal lagoon facies to the north that leads southward to distal hemipelagic facies interfingered by turbiditic Lowstand System Tracks (LST). The location of these LST is strongly controlled by inherited Danian topography. The regressive cycle ends with a major regression associated with an erosional surface. This surface is linked with a network of canyons in the north, an important

Hepatitis E virus coinfection with hepatotropic viruses in Egyptian children.

Science.gov (United States)

Zaki, Maysaa El Sayed; Salama, Osama Saad; Mansour, Fathy Awaad; Hossein, Shaimaa

2008-06-01

Major hepatotropic viruses continue to be important causes of acute viral hepatitis in developing countries. This work was carried out to detect the seroprevalence of hepatitis E virus (HEV) markers in children with acute viral hepatitis due to hepatotropic viruses (A, B and C) and non-A, non-B, non-C acute hepatitis, and to ascertain the influence of HEV superinfection in individuals infected with hepatitis viruses (A, B and C). We studied prospectively 162 children with sporadic acute hepatitis who reported to our hospital. Thirteen healthy controls were also included in the study. Laboratory investigations were performed, including complete liver function tests. Complete serological profiles for hepatitis viruses A, B, C and E were evaluated. HEV immunoglobulin G was detected with highest percentage among patients with hepatitis B (56.7%), followed by patients with hepatitis C virus (52.0%), hepatitis A virus (34.1%) and combined hepatitis B and C viruses (30.0%). The detection rate among patients with non-A, non-B, non-C hepatitis was 7.1%. HEV immunoglobulin M was found in 4.5% of hepatitis A virus patients and in 3.3% of hepatitis B patients. The prevalence of HEV immunoglobulin G and immunoglobulin M correlated with the levels of hepatic aspartate aminotransferase and alanine aminotransferase in patients with dual markers of infection with hepatitis E and other viruses compared to patients with acute hepatitis due to A and C viruses. HEV serological markers are common among children with acute viral hepatitis, especially from hepatitis C and B viruses. There may be increased sensitivity to HEV coinfection in association with hepatitis B and C infections. Dual infection with HEV and other hepatotropic viruses was associated with greater elevation of aspartate and alanine aminotransferases.

Petroleum systems in rift basins – a collective approach in South-east Asian basins.

NARCIS (Netherlands)

Doust, H.; Sumner, D.

2007-01-01

This paper synthesizes some of the main conclusions reached in a recent regional review of the Tertiary basins of Southeast Asia, carried out by Shell. Four distinctive types of petroleum systems, correlating with the four main stages of basin evolution (early to late syn-rift and early to late

Phytophthora viruses.

Science.gov (United States)

Cai, Guohong; Hillman, Bradley I

2013-01-01

Phytophthora sp. is a genus in the oomycetes, which are similar to filamentous fungi in morphology and habitat, but phylogenetically more closely related to brown algae and diatoms and fall in the kingdom Stramenopila. In the past few years, several viruses have been characterized in Phytophthora species, including four viruses from Phytophthora infestans, the late blight pathogen, and an endornavirus from an unnamed Phytophthora species from Douglas fir. Studies on Phytophthora viruses have revealed several interesting systems. Phytophthora infestans RNA virus 1 (PiRV-1) and PiRV-2 are likely the first members of two new virus families; studies on PiRV-3 support the establishment of a new virus genus that is not affiliated with established virus families; PiRV-4 is a member of Narnaviridae, most likely in the genus Narnavirus; and Phytophthora endornavirus 1 (PEV1) was the first nonplant endornavirus at the time of reporting. Viral capsids have not been found in any of the above-mentioned viruses. PiRV-1 demonstrated a unique genome organization that requires further examination, and PiRV-2 may have played a role in late blight resurgence in 1980s-1990s. Copyright © 2013 Elsevier Inc. All rights reserved.

Viruses infecting reptiles.

Science.gov (United States)

Marschang, Rachel E

2011-11-01

A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch's postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

Viruses Infecting Reptiles

Directory of Open Access Journals (Sweden)

Rachel E. Marschang

2011-11-01

Full Text Available A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch’s postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

The Donets Basin (Ukraine/Russia): coalification and thermal history.

NARCIS (Netherlands)

Sachsenhofer, R.F.; Privalov, V.A.; Zhykalyak, M.V.; Bueker, C.; Panova, E.A.; Rainer, T.; Shymanovskyy, V.A.; Stephenson, R.A.

2002-01-01

The Donets Basin (Donbas) is one of the major late Paleozoic coal basins in the world. The Donbas Foldbelt is an inverted part of the Donets Basin characterized by WNW-ESE-trending folds and faults. The age of basin inversion is under discussion. Large parts of the Donets Basin host anthracite and

Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

Directory of Open Access Journals (Sweden)

Bin Zhou

2014-10-01

Full Text Available Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV. Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1. This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2 showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

Science.gov (United States)

Zhou, Bin; Ma, Jingjiao; Liu, Qinfang; Bawa, Bhupinder; Wang, Wei; Shabman, Reed S; Duff, Michael; Lee, Jinhwa; Lang, Yuekun; Cao, Nan; Nagy, Abdou; Lin, Xudong; Stockwell, Timothy B; Richt, Juergen A; Wentworth, David E; Ma, Wenjun

2014-10-01

Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV). Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1). This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2) showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

The geologic history of Margaritifer basin, Mars

Science.gov (United States)

Salvatore, M. R.; Kraft, M. D.; Edwards, Christopher; Christensen, P.R.

2016-01-01

In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava (ULM) outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre Basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

Seroprevalence of HTLV1,2 Virus Among Injection Drug Addicts in Isfahan, 2007-2008

Directory of Open Access Journals (Sweden)

Sh Farzaneh

2009-10-01

Full Text Available Introduction: Human T-cell lymphotropic virus (HTLV, is a member of the retroviridae family. Infection with this virus leads to adult T-cell leukemia (ATL and tropical spastic paraparesis (TSP. HTLV is endemic in Japan, parts of central Africa, Caribbean basin and Iran (Mashhad. Transmission routes of HTLV are believed to be from mother to child, especially during breastfeeding, sexual contact, and through blood transfusion or needle sharing. Considering the risk of HTLV infection among injection drug addicts, the authors evaluated the seroprevalence of HTLV1,2 infection among injection drug addicts in Isfahan Methods: This cross sectional study included a total of 150 injection drug users who were recruited at the drug abuse treatment clinic and the infectious diseases department of Alzahra university Hospital. Participants were interviewed using a structured questionnaire. Epidemiologic data were recorded and their blood samples were tested for HBs Ag and antibodies against HTLV1,2, human immunodeficiency virus (HIV and hepatitis C (HCV by Elisa method . Results were analyzed by SPSS software version 13. Results: Seroprevalence of HTLV1,2, HBV(HBs Ag, HCV and HIV was 2.7%, 1.3% 23.3% and 2.7%, respectively. Some of the subjects were co infected with two viruses. One patient was infected with both HCV Ab and HBs Ag , while another was positive for HIV Ab plus HBs Ag . Three were co infected with HCV and HIV. Among those with HTLV1,2, only one was HCV Ab positive. Only in one person with HTLV1,2 Ab had a positive history of blood transfusion. Conclusion: This study shows that this virus is present in injection drug users community of Isfahan and can be a potential source for transmission. But proposal of screening of HTLV1,2 among injection drug users in Isfahan requires further investigations.

K Basin Hazard Analysis

Energy Technology Data Exchange (ETDEWEB)

PECH, S.H.

2000-08-23

This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Final Safety Analysis Report. This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report.

K Basin Hazard Analysis

International Nuclear Information System (INIS)

PECH, S.H.

2000-01-01

This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Final Safety Analysis Report. This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report

The Agost Basin (Betic Cordillera, Alicante province, Spain): a pull-apart basin involving salt tectonics

Science.gov (United States)

Martín-Martín, Manuel; Estévez, Antonio; Martín-Rojas, Ivan; Guerrera, Francesco; Alcalá, Francisco J.; Serrano, Francisco; Tramontana, Mario

2018-03-01

The Agost Basin is characterized by a Miocene-Quaternary shallow marine and continental infilling controlled by the evolution of several curvilinear faults involving salt tectonics derived from Triassic rocks. From the Serravallian on, the area experienced a horizontal maximum compression with a rotation of the maximum stress axis from E-W to N-S. The resulting deformation gave rise to a strike-slip fault whose evolution is characterized progressively by three stages: (1) stepover/releasing bend with a dextral motion of blocks; (2) very close to pure horizontal compression; and (3) restraining bend with a sinistral movement of blocks. In particular, after an incipient fracturing stage, faults generated a pull-apart basin with terraced sidewall fault and graben subzones developed in the context of a dextral stepover during the lower part of late Miocene p.p. The occurrence of Triassic shales and evaporites played a fundamental role in the tectonic evolution of the study area. The salty material flowed along faults during this stage generating salt walls in root zones and salt push-up structures at the surface. During the purely compressive stage (middle part of late Miocene p.p.) the salt walls were squeezed to form extrusive mushroom-like structures. The large amount of clayish and salty material that surfaced was rapidly eroded and deposited into the basin, generating prograding fan clinoforms. The occurrence of shales and evaporites (both in the margins of the basin and in the proper infilling) favored folding of basin deposits, faulting, and the formation of rising blocks. Later, in the last stage (upper part of late Miocene p.p.), the area was affected by sinistral restraining conditions and faults must have bent to their current shape. The progressive folding of the basin and deformation of margins changed the supply points and finally caused the end of deposition and the beginning of the current erosive systems. On the basis of the interdisciplinary results

Geologic implications of gas hydrates in the offshore of India: Krishna-Godavari Basin, Mahanadi Basin, Andaman Sea, Kerala-Konkan Basin

Digital Repository Service at National Institute of Oceanography (India)

Kumar, P.; Collett, T.S.; Boswell, R.; Cochran, J.R.; Lall, M.; Mazumdar, A.; Ramana, M.V.; Ramprasad, T.; Riedel, M.; Sain, K.; Sathe, A.V.; Vishwanath, K.; Yadav, U.S.

history of the Mahanadi Basin is similar to that of the Krishna-Godavari Basin. The Late Jurassic rift structures along the eastern margin of India cut across older NW-SE-trending Permian-Triassic Gondwana grabens including the Mahanadi and Pranhita...-Godavari grabens (Sastri et al., 1981). The Mahanadi graben appears to have a continuation in Antarctica as the Lambert graben (Federov et al., 1982). These structures served to delineate the fluvial drainage system throughout the evolution of the margin...

Prevalence of human immunodeficiency virus, hepatitis C virus ...

African Journals Online (AJOL)

Background. Human immunodeficiency virus (HIV), hepatitis B virus (HBV), hepatitis C virus (HCV) and syphilis remain major infections around the world. In Angola, about 166 000 individuals are living with HIV, representing a prevalence of 1.98% in adults between 15 and 49 years of age. In a 2003 study in Luanda, 4.5% ...

Real-time PCR protocols for the quantification of the begomovirus tomato yellow leaf curl Sardinia virus in tomato plants and in its insect vector.

Science.gov (United States)

Noris, Emanuela; Miozzi, Laura

2015-01-01

Tomato yellow leaf curl Sardinia virus (TYLCSV) (Geminiviridae) is an important pathogen, transmitted by the whitefly Bemisia tabaci, that severely affects the tomato production in the Mediterranean basin. Here, we describe real-time PCR protocols suitable for relative and absolute quantification of TYLCSV in tomato plants and in whitefly extracts. Using primers and probe specifically designed for TYLCSV, the protocols for relative quantification allow to compare the amount of TYLCSV present in different plant or whitefly samples, normalized to the amount of DNA present in each sample using endogenous tomato or Bemisia genes as internal references. The absolute quantification protocol allows to calculate the number of genomic units of TYLCSV over the genomic units of the plant host (tomato), with a sensitivity of as few as ten viral genome copies per sample. The described protocols are potentially suitable for several applications, such as plant breeding for resistance, analysis of virus replication, and virus-vector interaction studies.

Implementing Integrated River Basin Management in China

NARCIS (Netherlands)

Boekhorst, D.G.J. te; Smits, A.J.M.; Yu, X.; Lifeng, L.; Lei, G.; Zhang, C.

2010-01-01

This paper examines the role of the World Wildlife Fund for Nature China as policy entrepreneur in China. It illustrates the ways in which the World Wildlife Fund for Nature is active in promoting integrated river basin management in the Yangtze River basin and how the efforts at basin level are

Epstein - Barr Virus

OpenAIRE

Štorkánová, Lenka

2011-01-01

Epstein-Barr virus Bachelor thesis summarizes the findings of Epstein-Barr virus (EBV), its general characteristics, transmission and spread of the virus, symptoms of disease and subsequent therapy and recovery. More specifically, it focuses on infectious mononucleosis, as well as more generally to other diseases, which the Epstein-Barr virus causes. It includes details of the vaccine against EB virus. There are the statistics on the incidence of infectious mononucleosis.

The Mackenzie Basin impacts study

International Nuclear Information System (INIS)

Cohen, S.J.

1993-01-01

In 1989, a commitment was made to begin development of a framework for an integrated regional impact assessment of global warming scenarios in the Mackenzie Basin, the most populated region of Canada's north. The project, called Mackenzie Basin Impact Study (MBIS), is led by a multidisciplinary working group from government and non-governmental organizations with interests in the Basin. Objectives of MBIS include defining the direction and magnitude of regional-scale impacts of global warming scenarios on the physical, biological, and human systems of the Basin. MBIS will also identify regional sensitivities to climate, inter-system linkages, uncertainties, policy implications, and research needs. MBIS research activities as of March 1992 are outlined and policy concerns related to global warming are listed. Two new methodologies are being developed by MBIS to address particular economic and policy concerns: a socio-economic resource accounting framework and an integrated land assessment framework. Throughout MBIS, opportunities will be presented for western science and traditional native knowledge to be integrated

77 FR 45653 - Yakima River Basin Conservation Advisory Group; Yakima River Basin Water Enhancement Project...

Science.gov (United States)

2012-08-01

... Basin Conservation Advisory Group, Yakima River Basin Water Enhancement Project, established by the... Water Conservation Program. DATES: The meeting will be held on Tuesday, August 21, 2012, from 1 p.m. to... the implementation of the Water Conservation Program, including the applicable water conservation...

Emerging influenza viruses and the prospect of a universal influenza virus vaccine.

Science.gov (United States)

Krammer, Florian

2015-05-01

Influenza viruses cause annual seasonal epidemics and pandemics at irregular intervals. Several cases of human infections with avian and swine influenza viruses have been detected recently, warranting enhanced surveillance and the development of more effective countermeasures to address the pandemic potential of these viruses. The most effective countermeasure against influenza virus infection is the use of prophylactic vaccines. However, vaccines that are currently in use for seasonal influenza viruses have to be re-formulated and re-administered in a cumbersome process every year due to the antigenic drift of the virus. Furthermore, current seasonal vaccines are ineffective against novel pandemic strains. This paper reviews zoonotic influenza viruses with pandemic potential and technological advances towards better vaccines that induce broad and long lasting protection from influenza virus infection. Recent efforts have focused on the development of broadly protective/universal influenza virus vaccines that can provide immunity against drifted seasonal influenza virus strains but also against potential pandemic viruses. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Virus-host interaction in feline immunodeficiency virus (FIV) infection.

Science.gov (United States)

Taniwaki, Sueli Akemi; Figueiredo, Andreza Soriano; Araujo, João Pessoa

2013-12-01

Feline immunodeficiency virus (FIV) infection has been the focus of several studies because this virus exhibits genetic and pathogenic characteristics that are similar to those of the human immunodeficiency virus (HIV). FIV causes acquired immunodeficiency syndrome (AIDS) in cats, nevertheless, a large fraction of infected cats remain asymptomatic throughout life despite of persistent chronic infection. This slow disease progression may be due to the presence of factors that are involved in the natural resistance to infection and the immune response that is mounted by the animals, as well as due to the adaptation of the virus to the host. Therefore, the study of virus-host interaction is essential to the understanding of the different patterns of disease course and the virus persistence in the host, and to help with the development of effective vaccines and perhaps the cure of FIV and HIV infections. Copyright © 2013 Elsevier Ltd. All rights reserved.

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses.

Science.gov (United States)

Chang, Hsiao-Han; Huber, Roland G; Bond, Peter J; Grad, Yonatan H; Camerini, David; Maurer-Stroh, Sebastian; Lipsitch, Marc

2017-07-01

To analyse the proportions of protein identity between Zika virus and dengue, Japanese encephalitis, yellow fever, West Nile and chikungunya viruses as well as polymorphism between different Zika virus strains. We used published protein sequences for the Zika virus and obtained protein sequences for the other viruses from the National Center for Biotechnology Information (NCBI) protein database or the NCBI virus variation resource. We used BLASTP to find regions of identity between viruses. We quantified the identity between the Zika virus and each of the other viruses, as well as within-Zika virus polymorphism for all amino acid k -mers across the proteome, with k ranging from 6 to 100. We assessed accessibility of protein fragments by calculating the solvent accessible surface area for the envelope and nonstructural-1 (NS1) proteins. In total, we identified 294 Zika virus protein fragments with both low proportion of identity with other viruses and low levels of polymorphisms among Zika virus strains. The list includes protein fragments from all Zika virus proteins, except NS3. NS4A has the highest number (190 k -mers) of protein fragments on the list. We provide a candidate list of protein fragments that could be used when developing a sensitive and specific serological test to detect previous Zika virus infections.

Blueberry (Vaccinium corymbosum)-Virus Diseases

Science.gov (United States)

At least six viruses have been found in highbush blueberry plantings in the Pacific Northwest: Blueberry mosaic virus, Blueberry red ringspot virus, Blueberry scorch virus, Blueberry shock virus, Tobacco ringspot virus, and Tomato ringspot virus. Six other virus and virus-like diseases of highbush b...

Groundwater quality in the Northern Coast Ranges Basins, California

Science.gov (United States)

Mathany, Timothy M.; Belitz, Kenneth

2015-01-01

The Northern Coast Ranges (NOCO) study unit is 633 square miles and consists of 35 groundwater basins and subbasins (California Department of Water Resources, 2003; Mathany and Belitz, 2015). These basins and subbasins were grouped into two study areas based primarily on locality. The groundwater basins and subbasins located inland, not adjacent to the Pacific Ocean, were aggregated into the Interior Basins (NOCO-IN) study area. The groundwater basins and subbasins adjacent to the Pacific Ocean were aggregated into the Coastal Basins (NOCO-CO) study area (Mathany and others, 2011).

K-Basin isolation barrier seal

International Nuclear Information System (INIS)

Ruff, E.S.

1994-10-01

This report documents various aspects of the design, analysis, procurement, and fabrication of the hydraulic seal on the isolation barriers to be installed in the 100-K Area spent nuclear fuel basin. The isolation barrier is used to keep water in the basin in the event of an earthquake

Gondwana basins and their coal resources in Bangladesh

International Nuclear Information System (INIS)

Nehaluddin, M.; Sultan-ul-Islam, M.

1994-01-01

Fault bounded five Gondwana basins have been discovered in the north western Bangladesh. Among these basins show considerable amount of coal deposits. The Gondwana rocks are highly formed during the Permo-carboniferous diastrophism and later on acquired dynamic characters. In almost all basins, the Permian rocks overlie the Precambrian basement and underlie either the Tertiary or the Cretaceous sediments, structural, stratigraphic, and depositional history of these basins is more or less similar. The sedimentary sequences are composed of light to dark gray, fine to very coarse grained, sub angular to sub rounded felspathic sandstone, dark grey carbonaceous shale and sandstone, variegated conglomerate and thick coal seams (single seam max. 42.38m). The rocks are often alternated and bear the characteristics of cyclic sedimentation. The depositional environments varied from restricted drainage to open fluvial dominated low to moderate sinuous drainage system. The coal bearing basins were flanked by vegetated and swampy over bank. Age of these coals is suggested to be the late permian. Proved and probable reserves of coal in Jamalganj-Paharpur basin are 670 and 1,460 million metric tons, in Barapukuria basin 303 and 3899 million metric tons; in Barapukuria basin 303 and 389 million metric tons; and in Khalaspir basin 143 and 685 million metric tons respectively. The coal is high volatile, low sulphur, bituminous type. It can be used for different forms of thermal conversion. (author)

Estimating Stream Discharge of Aboine River Basin of Southeast ...

African Journals Online (AJOL)

ADOWIE PERE

of inter-basin parameters showed that the Aboine drainage basin is basically a flat surface. This ... on the fluvial system and also for predicting the basin output variables. Surface .... outflows of rainwater from the basin as has been done by ...

Geomorphological characterization of endorheic basins in northern Chile

Science.gov (United States)

Dorsaz, J.; Gironas, J. A.; Escauriaza, C. R.; Rinaldo, A.

2011-12-01

Quantitative geomorphology regroups a large number of interesting tools to characterize natural basins across scales. The application of these tools to several river basins allows the description and comparison of geomorphological properties at different spatial scales as oppose to more traditional descriptors that are typically applied at a single scale, meaning the catchment scale. Most of the recent research using these quantitative geomorphological tools has focused on open catchments and no specific attention has been given to endorheic basins, and the possibility of having particular features that distinguish them from exorheic catchments. The main objective of our study is to characterize endorheic basins and investigate whether these special geomorphological features can be identified. Because scaling invariance is a widely observed and relatively well quantified property of open basins, it provides a suitable tool to characterize differences between the geomorphology of closed and open basins. Our investigation focuses on three closed basins located in northern Chile which describe well the diversity in the geomorphology and geology of this arid region. Results show that endhoreic basins exhibit different slope-area and flow paths sinuosity regimes compared to those observed in open basins. These differences are in agreement with the particular self-similar behavior across spatial scales of the Euclidean length of subcatchments, as well as the Hack's law and Horton's ratios. These regimes imply different physical processes inside the channel network regardless of the basin area, and they seem to be related to the endorheic character of these basins. The analysis of the probability density functions of contributing areas and lengths to the lower region shows that the hypothesis of self-similarity can also be applied to closed basins. Theoretical expressions for these distributions were derived and validated by the data. Future research will focus on (1

Vertical movement in mare basins: relation to mare emplacement, basin tectonics, and lunar thermal history

International Nuclear Information System (INIS)

Solomon, S.C.

1979-01-01

The spatial and temporal relationships of linear rilles and mare ridges in the Serenitatis basin region of the moon are explained by a combination of lithospheric flexure in response to basin loading by basalt fill and a time-dependent global stress due to the thermal evolution of the lunar interior. The pertinent tectonic observations are the radial distance of basin concentric rilles or graben from the mare center; the location and orientation of mare ridges, interpreted as compressive features; and the restriction of graben formation to times older than 3.6 +- 0.2 b.y. ago, while ridge formation continued after emplacement of the youngest mare basalt unit (approx.3 b.y. ago). The locations of the graben are consistent with the geometry of the mare basalt load expected from the dimensions of multiring basins for values of the thickness of the elastic lithosphere beneath Serenitatis in the range 25--50 km at 3.6--3.8 b.y. ago. The locations and orientations of mare ridges are consistent with the load inferred from surface mapping and subsurface radar reflections for values of the elastic lithosphere thickness near 100 km at 3.0--3.4 b.y. ago. The thickening of the lithosphere beneath a major basin during the evolution of mare volcanism is thus clearly evident in the tectonics. The cessation of rille formation and the prolonged period of ridge formation are attributed to a change in the global horizontal thermal stress from extension to compression as the moon shifted from net expansion to overall cooling and contraction. Severe limits as placed on the range of possible lunar thermal histories. The zone of horizontal extensional stresses peripheral to mare loads favors the edge of mare basins as the preferred sites for mare basalt magma eruption in the later stages of mare fill, although subsidence may lead to accumulation of such young lavas in basin centers

Satellite altimetry over large hydrological basins

Science.gov (United States)

Calmant, Stephane

2015-04-01

The use of satellite altimetry for hydrological applications, either it is basin management or hydrological modeling really started with the 21st century. Before, during two decades, the efforts were concentrated on the data processing until a precision of a few decimeters could be achieved. Today, several web sites distribute hundreds of series spread over hundeds of rivers runing in the major basins of the world. Among these, the Amazon basin has been the most widely studied. Satellite altimetry is now routinely used in this transboundary basin to predict discharges ranging over 4 orders of magnitude. In a few years, satellite altimetry should evolve dramatically. This year, we should see the launchs of Jason-3 and that of Sentinel-3A operating in SAR mode. With SAR, the accuracy and resolution of a growing number of measurements should be improved. In 2020, SWOT will provide a full coverage that will join in a unique framework all the previous and forthcoming missions. These technical and thematical evolutions will be illustrated by examples taken in the Amazon and Congo basin.

Two characteristics of planar intertwined basins of attraction

International Nuclear Information System (INIS)

Ding Changming

2012-01-01

Highlights: ► A new mathematical definition of intertwined basins of attraction is proposed. ► Basins are intertwined iff a limit set of stable manifold contains at least two points. ► Basins are intertwined iff the closure of stable manifold is not arc-connected. ► The intertwining property is preserved by topologically equivalent dynamical systems. - Abstract: In this paper, we investigate the intertwined basins of attraction for planar dynamical systems. We prove that the intertwining property is preserved by topologically equivalent systems. Two necessary and sufficient conditions for a planar system having intertwined basins are given.

Transmission dynamics and changing epidemiology of West Nile virus.

Science.gov (United States)

Blitvich, Bradley J

2008-06-01

West Nile virus (WNV) is a flavivirus that is maintained in a bird-mosquito transmission cycle. Humans, horses and other non-avian vertebrates are usually incidental hosts, but evidence is accumulating that this might not always be the case. Historically, WNV has been associated with asymptomatic infections and sporadic disease outbreaks in humans and horses in Africa, Europe, Asia and Australia. However, since 1994, the virus has caused frequent outbreaks of severe neuroinvasive disease in humans and horses in Europe and the Mediterranean Basin. In 1999, WNV underwent a dramatic expansion of its geographic range, and was reported for the first time in the Western Hemisphere during an outbreak of human and equine encephalitis in New York City. The outbreak was accompanied by extensive and unprecedented avian mortality. Since then, WNV has dispersed across the Western Hemisphere and is now found throughout the USA, Canada, Mexico and the Caribbean, and parts of Central and South America. WNV has been responsible for >27,000 human cases, >25,000 equine cases and hundreds of thousands of avian deaths in the USA but, surprisingly, there have been only sparse reports of WNV disease in vertebrates in the Caribbean and Latin America. This review summarizes our current understanding of WNV with particular emphasis on its transmission dynamics and changing epidemiology.

Climatic controls on arid continental basin margin systems

Science.gov (United States)

Gough, Amy; Clarke, Stuart; Richards, Philip; Milodowski, Antoni

2016-04-01

Alluvial fans are both dominant and long-lived within continental basin margin systems. As a result, they commonly interact with a variety of depositional systems that exist at different times in the distal extent of the basin as the basin evolves. The deposits of the distal basin often cycle between those with the potential to act as good aquifers and those with the potential to act as good aquitards. The interactions between the distal deposits and the basin margin fans can have a significant impact upon basin-scale fluid flow. The fans themselves are commonly considered as relatively homogeneous, but their sedimentology is controlled by a variety of factors, including: 1) differing depositional mechanisms; 2) localised autocyclic controls; 3) geometrical and temporal interactions with deposits of the basin centre; and, 4) long-term allocyclic climatic variations. This work examines the basin margin systems of the Cutler Group sediments of the Paradox Basin, western U.S.A and presents generalised facies models for the Cutler Group alluvial fans as well as for the zone of interaction between these fans and the contemporaneous environments in the basin centre, at a variety of scales. Small-scale controls on deposition include climate, tectonics, base level and sediment supply. It has been ascertained that long-term climatic alterations were the main control on these depositional systems. Models have been constructed to highlight how both long-term and short-term alterations in the climatic regime can affect the sedimentation in the basin. These models can be applied to better understand similar, but poorly exposed, alluvial fan deposits. The alluvial fans of the Brockram Facies, northern England form part of a once-proposed site for low-level nuclear waste decommissioning. As such, it is important to understand the sedimentology, three-dimensional geometry, and the proposed connectivity of the deposits from the perspective of basin-scale fluid flow. The developed

Marketing San Juan Basin gas

International Nuclear Information System (INIS)

Posner, D.M.

1988-01-01

Marketing natural gas produced in the San Juan Basin of New Mexico and Colorado principally involves four gas pipeline companies with significant facilities in the basin. The system capacity, transportation rates, regulatory status, and market access of each of these companies is evaluated. Because of excess gas supplies available to these pipeline companies, producers can expect improved take levels and prices by selling gas directly to end users and utilities as opposed to selling gas to the pipelines for system supply. The complexities of transporting gas today suggest that the services of an independent gas marketing company may be beneficial to smaller producers with gas supplies in the San Juan Basin

Western Canada Sedimentary Basin competitiveness

International Nuclear Information System (INIS)

Millar, R.H.G.

1996-01-01

Recent dramatic expansion of the natural gas industry in the Western Canada Sedimentary Basin provided ample proof of the potential of this area for further development of natural gas supply. However, the inherent competitive advantages provided by the Western Canada Sedimentary Basin were said to have been offset by low netback prices resulting in poor producer economics when competitiveness is measured by availability of opportunities to find and develop gas supply at costs low enough to ensure attractive returns. Technology was identified as one of the key elements in improving basin competitiveness, but the greatest potential lies in reduced transportation costs and increased access to North American market centres. 8 figs

Single virus genomics: a new tool for virus discovery.

Directory of Open Access Journals (Sweden)

Lisa Zeigler Allen

Full Text Available Whole genome amplification and sequencing of single microbial cells has significantly influenced genomics and microbial ecology by facilitating direct recovery of reference genome data. However, viral genomics continues to suffer due to difficulties related to the isolation and characterization of uncultivated viruses. We report here on a new approach called 'Single Virus Genomics', which enabled the isolation and complete genome sequencing of the first single virus particle. A mixed assemblage comprised of two known viruses; E. coli bacteriophages lambda and T4, were sorted using flow cytometric methods and subsequently immobilized in an agarose matrix. Genome amplification was then achieved in situ via multiple displacement amplification (MDA. The complete lambda phage genome was recovered with an average depth of coverage of approximately 437X. The isolation and genome sequencing of uncultivated viruses using Single Virus Genomics approaches will enable researchers to address questions about viral diversity, evolution, adaptation and ecology that were previously unattainable.

Resistance to Two Heterologous Neurotropic Oncolytic Viruses, Semliki Forest Virus and Vaccinia Virus, in Experimental Glioma

Science.gov (United States)

Le Boeuf, Fabrice; Lemay, Chantal; De Silva, Naomi; Diallo, Jean-Simon; Cox, Julie; Becker, Michelle; Choi, Youngmin; Ananth, Abhirami; Sellers, Clara; Breton, Sophie; Roy, Dominic; Falls, Theresa; Brun, Jan; Hemminki, Akseli; Hinkkanen, Ari; Bell, John C.

2013-01-01

Attenuated Semliki Forest virus (SFV) may be suitable for targeting malignant glioma due to its natural neurotropism, but its replication in brain tumor cells may be restricted by innate antiviral defenses. We attempted to facilitate SFV replication in glioma cells by combining it with vaccinia virus, which is capable of antagonizing such defenses. Surprisingly, we found parenchymal mouse brain tumors to be refractory to both viruses. Also, vaccinia virus appears to be sensitive to SFV-induced antiviral interference. PMID:23221568

Geodatabase of sites, basin boundaries, and topology rules used to store drainage basin boundaries for the U.S. Geological Survey, Colorado Water Science Center

Science.gov (United States)

Dupree, Jean A.; Crowfoot, Richard M.

2012-01-01

This geodatabase and its component datasets are part of U.S. Geological Survey Digital Data Series 650 and were generated to store basin boundaries for U.S. Geological Survey streamgages and other sites in Colorado. The geodatabase and its components were created by the U.S. Geological Survey, Colorado Water Science Center, and are used to derive the numeric drainage areas for Colorado that are input into the U.S. Geological Survey's National Water Information System (NWIS) database and also published in the Annual Water Data Report and on NWISWeb. The foundational dataset used to create the basin boundaries in this geodatabase was the National Watershed Boundary Dataset. This geodatabase accompanies a U.S. Geological Survey Techniques and Methods report (Book 11, Section C, Chapter 6) entitled "Digital Database Architecture and Delineation Methodology for Deriving Drainage Basins, and Comparison of Digitally and Non-Digitally Derived Numeric Drainage Areas." The Techniques and Methods report details the geodatabase architecture, describes the delineation methodology and workflows used to develop these basin boundaries, and compares digitally derived numeric drainage areas in this geodatabase to non-digitally derived areas. 1. COBasins.gdb: This geodatabase contains site locations and basin boundaries for Colorado. It includes a single feature dataset, called BasinsFD, which groups the component feature classes and topology rules. 2. BasinsFD: This feature dataset in the "COBasins.gdb" geodatabase is a digital container that holds the feature classes used to archive site locations and basin boundaries as well as the topology rules that govern spatial relations within and among component feature classes. This feature dataset includes three feature classes: the sites for which basins have been delineated (the "Sites" feature class), basin bounding lines (the "BasinLines" feature class), and polygonal basin areas (the "BasinPolys" feature class). The feature dataset

Detection of sweet potato virus C, sweet potato virus 2 and sweet potato feathery mottle virus in Portugal.

Science.gov (United States)

Varanda, Carla M R; Santos, Susana J; Oliveira, Mônica D M; Clara, Maria Ivone E; Félix, Maria Rosário F

2015-06-01

Field sweet potato plants showing virus-like symptoms, as stunting, leaf distortion, mosaic and chlorosis, were collected in southwest Portugal and tested for the presence of four potyviruses, sweet potato virus C (SPVC), sweet potato virus 2 (SPV2), sweet potato feathery mottle virus (SPFMV), sweet potato virus G (SPVG), and the crinivirus sweet potato chlorotic stunt virus (SPCSV). DsRNA fractions were extracted from symptomatic leaves and used as templates in single and multiplex RT-PCR assays using previously described specific primers for each analyzed virus. The amplified reaction products for SPVC, SPV2 and SPFMV were of expected size, and direct sequencing of PCR products revealed that they correspond to the coat protein gene (CP) and showed 98%, 99% and 99% identity, respectively, to those viruses. Comparison of the CP genomic and amino acid sequences of the Portuguese viral isolates recovered here with those of ten other sequences of isolates obtained in different countries retrieved from the GenBank showed very few differences. The application of the RT-PCR assays revealed for the first time the presence of SPVC and SPFMV in the sweet potato crop in Portugal, the absence of SPVG and SPCSV in tested plants, as well as the occurrence of triple virus infections under field conditions.

K Basins Hazard Analysis

International Nuclear Information System (INIS)

WEBB, R.H.

1999-01-01

This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Safety Analysis Report (HNF-SD-WM-SAR-062/Rev.4). This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report

K West basin isolation barrier leak rate test

International Nuclear Information System (INIS)

Whitehurst, R.; McCracken, K.; Papenfuss, J.N.

1994-01-01

This document establishes the procedure for performing the acceptance test on the two isolation barriers being installed in K West basin. This acceptance test procedure shall be used to: First establish a basin water loss rate prior to installation of the two isolation barriers between the main basin and the discharge chute in K-Basin West. Second, perform an acceptance test to verify an acceptable leakage rate through the barrier seals

The Apollo peak-ring impact basin: Insights into the structure and evolution of the South Pole-Aitken basin

Science.gov (United States)

Potter, Ross W. K.; Head, James W.; Guo, Dijun; Liu, Jianzhong; Xiao, Long

2018-05-01

The 492 km-diameter Apollo impact basin post-dates, and is located at the inner edge of, the ∼2240 km-diameter South Pole-Aitken (SPA) basin, providing an opportunity to assess the SPA substructure and lateral heterogeneity. Gravity Recovery and Interior Laboratory gravity data suggest an average crustal thickness on the floor of SPA of ∼20 km and within the Apollo basin of ∼5 km, yet remote sensing data reveal no conclusive evidence for the presence of exposed mantle material. We use the iSALE shock physics code to model the formation of the Apollo basin and find that the observational data are best fit by the impact of a 40 km diameter body traveling at 15 km/s into 20-40 km thick crustal material. These results strongly suggest that the Apollo impact occurred on ejecta deposits and collapsed crustal material of the SPA basin and could help place constraints on the location, size and geometry of the SPA transient cavity. The peak ring in the interior of Apollo basin is plausibly interpreted to be composed of inwardly collapsed lower crustal material that experienced peak shock pressures in excess of 35 GPa, consistent with remote sensing observations that suggest shocked plagioclase. Proposed robotic and/or human missions to SPA and Apollo would present an excellent opportunity to test the predictions of this work and address many scientific questions about SPA basin evolution and structure.

Thermal evolution of a hyperextended rift basin, Mauléon Basin, western Pyrenees

Science.gov (United States)

Hart, Nicole R.; Stockli, Daniel F.; Lavier, Luc L.; Hayman, Nicholas W.

2017-06-01

Onshore and offshore geological and geophysical observations and numerical modeling have greatly improved the conceptual understanding of magma-poor rifted margins. However, critical questions remain concerning the thermal evolution of the prerift to synrift phases of thinning ending with the formation of hyperextended crust and mantle exhumation. In the western Pyrenees, the Mauléon Basin preserves the structural and stratigraphic record of Cretaceous extension, exhumation, and sedimentation of the proximal-to-distal margin development. Pyrenean shortening uplifted basement and overlying sedimentary basins without pervasive shortening or reheating, making the Mauléon Basin an ideal locality to study the temporal and thermal evolution of magma-poor hyperextended rift systems through coupling bedrock and detrital zircon (U-Th)/He thermochronometric data from transects characterizing different structural rifting domains. These new data indicate that the basin was heated during early rifting to >180°C with geothermal gradients of 80-100°C/km. The proximal margin recorded rift-related exhumation/cooling at circa 98 Ma, whereas the distal margin remained >180°C until the onset of Paleocene Pyrenean shortening. Lithospheric-scale numerical modeling shows that high geothermal gradients, >80°C/km, and synrift sediments >180°C, can be reached early in rift evolution via heat advection by lithospheric depth-dependent thinning and blanketing caused by the lower thermal conductivity of synrift sediments. Mauléon Basin thermochronometric data and numerical modeling illustrate that reheating of basement and synrift strata might play an important role and should be considered in the future development of conceptual and numerical models for hyperextended magma-poor continental rifted margins.

Hepatitis E virus and fulminant hepatitis--a virus or host-specific pathology?

Science.gov (United States)

Smith, Donald B; Simmonds, Peter

2015-04-01

Fulminant hepatitis is a rare outcome of infection with hepatitis E virus. Several recent reports suggest that virus variation is an important determinant of disease progression. To critically examine the evidence that virus-specific factors underlie the development of fulminant hepatitis following hepatitis E virus infection. Published sequence information of hepatitis E virus isolates from patients with and without fulminant hepatitis was collected and analysed using statistical tests to identify associations between virus polymorphisms and disease outcome. Fulminant hepatitis has been reported following infection with all four hepatitis E virus genotypes that infect humans comprising multiple phylogenetic lineages within genotypes 1, 3 and 4. Analysis of virus sequences from individuals infected by a common source did not detect any common substitutions associated with progression to fulminant hepatitis. Re-analysis of previously reported associations between virus substitutions and fulminant hepatitis suggests that these were probably the result of sampling biases. Host-specific factors rather than virus genotype, variants or specific substitutions appear to be responsible for the development of fulminant hepatitis. © 2014 The Authors. Liver International Published by John Wiley & Sons Ltd.

Circulating avian influenza viruses closely related to the 1918 virus have pandemic potential

Science.gov (United States)

Watanabe, Tokiko; Zhong, Gongxun; Russell, Colin A.; Nakajima, Noriko; Hatta, Masato; Hanson, Anthony; McBride, Ryan; Burke, David F.; Takahashi, Kenta; Fukuyama, Satoshi; Tomita, Yuriko; Maher, Eileen A.; Watanabe, Shinji; Imai, Masaki; Neumann, Gabriele; Hasegawa, Hideki; Paulson, James C.; Smith, Derek J.; Kawaoka, Yoshihiro

2014-01-01

Summary Wild birds harbor a large gene pool of influenza A viruses that have the potential to cause influenza pandemics. Foreseeing and understanding this potential is important for effective surveillance. Our phylogenetic and geographic analyses revealed the global prevalence of avian influenza virus genes whose proteins differ only a few amino acids from the 1918 pandemic influenza virus, suggesting that 1918-like pandemic viruses may emerge in the future. To assess this risk, we generated and characterized a virus composed of avian influenza viral segments with high homology to the 1918 virus. This virus exhibited higher pathogenicity in mice and ferrets than an authentic avian influenza virus. Further, acquisition of seven amino acid substitutions in the viral polymerases and the hemagglutinin surface glycoprotein conferred respiratory droplet transmission to the 1918-like avian virus in ferrets, demonstrating that contemporary avian influenza viruses with 1918 virus-like proteins may have pandemic potential. PMID:24922572

Lack of Durable Cross-Neutralizing Antibodies Against Zika Virus from Dengue Virus Infection.

Science.gov (United States)

Collins, Matthew H; McGowan, Eileen; Jadi, Ramesh; Young, Ellen; Lopez, Cesar A; Baric, Ralph S; Lazear, Helen M; de Silva, Aravinda M

2017-05-01

Cross-reactive antibodies elicited by dengue virus (DENV) infection might affect Zika virus infection and confound serologic tests. Recent data demonstrate neutralization of Zika virus by monoclonal antibodies or human serum collected early after DENV infection. Whether this finding is true in late DENV convalescence (>6 months after infection) is unknown. We studied late convalescent serum samples from persons with prior DENV or Zika virus exposure. Despite extensive cross-reactivity in IgG binding, Zika virus neutralization was not observed among primary DENV infections. We observed low-frequency (23%) Zika virus cross-neutralization in repeat DENV infections. DENV-immune persons who had Zika virus as a secondary infection had distinct populations of antibodies that neutralized DENVs and Zika virus, as shown by DENV-reactive antibody depletion experiments. These data suggest that most DENV infections do not induce durable, high-level Zika virus cross-neutralizing antibodies. Zika virus-specific antibody populations develop after Zika virus infection irrespective of prior DENV immunity.

Submarine landslides in Arctic sedimentation: Canada Basin

Science.gov (United States)

Mosher, David C.; Shimeld, John; Hutchinson, Deborah R.; Lebedova-Ivanova, N; Chapman, C.

2016-01-01

Canada Basin of the Arctic Ocean is the least studied ocean basin in the World. Marine seismic field programs were conducted over the past 6 years using Canadian and American icebreakers. These expeditions acquired more than 14,000 line-km of multibeam bathymetric and multi-channel seismic reflection data over abyssal plain, continental rise and slope regions of Canada Basin; areas where little or no seismic reflection data existed previously. Canada Basin is a turbidite-filled basin with flat-lying reflections correlateable over 100s of km. For the upper half of the sedimentary succession, evidence of sedimentary processes other than turbidity current deposition is rare. The Canadian Archipelago and Beaufort Sea margins host stacked mass transport deposits from which many of these turbidites appear to derive. The stratigraphic succession of the MacKenzie River fan is dominated by mass transport deposits; one such complex is in excess of 132,000 km2 in area and underlies much of the southern abyssal plain. The modern seafloor is also scarred with escarpments and mass failure deposits; evidence that submarine landsliding is an ongoing process. In its latest phase of development, Canada Basin is geomorphologically confined with stable oceanographic structure, resulting in restricted depositional/reworking processes. The sedimentary record, therefore, underscores the significance of mass-transport processes in providing sediments to oceanic abyssal plains as few other basins are able to do.

Ganjam virus.

Science.gov (United States)

Sudeep, A B; Jadi, R S; Mishra, A C

2009-11-01

Ganjam virus (GANV), a member of genus Nairovirus of family Bunyavirdae is of considerable veterinary importance in India. Though, predominantly tick borne, GANV was also isolated from mosquitoes, man and sheep. Neutralizing and complement fixing antibodies to GANV have been detected in animal and human sera collected from different parts of the country. Thirty three strains of GANV have been isolated from India, mainly from Haemaphysalis ticks. The virus replicated in certain vertebrate and mosquito cell lines and found pathogenic to laboratory animals. One natural infection and five laboratory-acquired infections in men were also reported. GANV is antigenically related to Nairobi sheep disease virus (NSDV) of Africa, which is highly pathogenic for sheep and goats causing 70-90 per cent mortality among the susceptible population. Recent molecular studies have demonstrated that GANV is an Asian variant of NSDV and both these viruses are related to the dreaded Crimean Congo haemorrhagic fever (CCHF) group viruses. The versatility of the virus to replicate in different arthropod species, its ability to infect sheep, goat and man makes it an important zoonotic agent.

Relationships between basin architecture, basin closure, and occurrence of sulphide-bearing schists

DEFF Research Database (Denmark)

Kalliomäki, Henrik; Torvela, Taija; Moreau, Julien

2014-01-01

We present field observations from the Palaeoproterozoic volcano-sedimentary Tampere palaeobasin, where the primary structures have been exceptionally well preserved. We use the observations to construct a new tectonic model for the southeastern margin of the Tampere basin during its inversion...... and subsequent closure. The observed volcano-sedimentary and structural features suggest a change in the local structural style from thick-skinned inversion to thin-skinned thrusting, in order to accommodate the crustal shortening during basin closure. Furthermore, it is suggested that there is a genetic...

Detailed bathymetric surveys in the central Indian Basin

Digital Repository Service at National Institute of Oceanography (India)

Kodagali, V.N.; KameshRaju, K.A.; Ramprasad, T.; George, P.; Jaisankar, S.

Over 420,000 line kilometers of echo-sounding data was collected in the Central Indian Basin. This data was digitized, merged with navigation data and a detailed bathymetric map of the Basin was prepared. The Basin can be broadly classified...

The Drosophila Nora virus is an enteric virus, transmitted via feces.

Science.gov (United States)

Habayeb, Mazen S; Cantera, Rafael; Casanova, Gabriela; Ekström, Jens-Ola; Albright, Shannon; Hultmark, Dan

2009-04-01

The biology of the Drosophila viruses has not been intensely investigated. Here we have investigated the biology of the Nora virus, a persistent Drosophila virus. We find that injected Nora virus is able to replicate in the files, reaching a high titer that is maintained in the next generation. There is a remarkable variation in the viral loads of individual flies in persistently infected stocks; the titers can differ by three orders of magnitude. The Nora virus is mainly found in the intestine of infected flies, and the histology of these infected intestines show increased vacuolization. The virus is excreted in the feces and is horizontally transmitted. The Nora virus infection has a very mild effect on the longevity of the flies, and no significant effect on the number of eggs laid and the percent of eggs that develop to adults.

Herpes viruses and human papilloma virus in nasal polyposis and controls

Directory of Open Access Journals (Sweden)

Dimitrios Ioannidis

2015-12-01

Full Text Available ABSTRACT INTRODUCTION: Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. OBJECTIVE: To compare the prevalence of human herpes viruses (1-6 and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. METHODS: Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. RESULTS: Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4% versus controls (4/38; 10.5%, but the difference did not reach significance (p = 0.06. Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29% versus controls (10/38; 26.32%,p = 0.13. In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%, and another was cytomegalovirus-positive (1/91; 1.1%, versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59 and low-risk-human papilloma viruses (6, 11. CONCLUSION: Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis.

Evaluation of recombinant influenza virus-simian immunodeficiency virus vaccines in macaques.

Science.gov (United States)

Sexton, Amy; De Rose, Robert; Reece, Jeanette C; Alcantara, Sheilajen; Loh, Liyen; Moffat, Jessica M; Laurie, Karen; Hurt, Aeron; Doherty, Peter C; Turner, Stephen J; Kent, Stephen J; Stambas, John

2009-08-01

There is an urgent need for human immunodeficiency virus (HIV) vaccines that induce robust mucosal immunity. Influenza A viruses (both H1N1 and H3N2) were engineered to express simian immunodeficiency virus (SIV) CD8 T-cell epitopes and evaluated following administration to the respiratory tracts of 11 pigtail macaques. Influenza virus was readily detected from respiratory tract secretions, although the infections were asymptomatic. Animals seroconverted to influenza virus and generated CD8 and CD4 T-cell responses to influenza virus proteins. SIV-specific CD8 T-cell responses bearing the mucosal homing marker beta7 integrin were induced by vaccination of naïve animals. Further, SIV-specific CD8 T-cell responses could be boosted by recombinant influenza virus-SIV vaccination of animals with already-established SIV infection. Sequential vaccination with influenza virus-SIV recombinants of different subtypes (H1N1 followed by H3N2 or vice versa) produced only a limited boost in immunity, probably reflecting T-cell immunity to conserved internal proteins of influenza A virus. SIV challenge of macaques vaccinated with an influenza virus expressing a single SIV CD8 T cell resulted in a large anamnestic recall CD8 T-cell response, but immune escape rapidly ensued and there was no impact on chronic SIV viremia. Although our results suggest that influenza virus-HIV vaccines hold promise for the induction of mucosal immunity to HIV, broader antigen cover will be needed to limit cytotoxic T-lymphocyte escape.

Schmallenberg virus – et nyt virus hos drøvtyggere

DEFF Research Database (Denmark)

Lohse, Louise

undersøgelser på laboratoriet, blev alle prøver i en længere periode testet negative for kendte patogener, der evt. kunne tænkes at knytte sig til disse sygdomsudbrud. Efterfølgende fandt man ved sekvensanalyse på DNA/RNA oprenset fra prøvematerialet lighed med virus fra orthobunyavirusgruppen. Disse virus er...... normalt vektorbårne og er kendt som årsag til sygdom i drøvtyggere i Australien, Asien, Afrika og Mellemøsten. Det nye virus blev kaldt Schmallenberg virus (SBV) efter stedet hvor det første tilfælde blev påvist. Siden har Schmallenberg virus spredt sig og er nu påvist i får, kvæg og geder i Tyskland......, Holland, Belgien, Luxembourg, Frankrig, Spanien, Italien og Storbritannien (status april 2012). Det antages, at virus overføres med mitter og myg og inkubationstiden har fra eksperimentelle forsøg vist sig at være kort (1-4 dage). Virus cirkulerer få dage i blodet og manifesterer sig ved milde uspecifikke...

BoHV-4-Based Vector Single Heterologous Antigen Delivery Protects STAT1(-/- Mice from Monkeypoxvirus Lethal Challenge.

Directory of Open Access Journals (Sweden)

Valentina Franceschi

2015-06-01

Full Text Available Monkeypox virus (MPXV is the etiological agent of human (MPX. It is an emerging orthopoxvirus zoonosis in the tropical rain forest of Africa and is endemic in the Congo-basin and sporadic in West Africa; it remains a tropical neglected disease of persons in impoverished rural areas. Interaction of the human population with wildlife increases human infection with MPX virus (MPXV, and infection from human to human is possible. Smallpox vaccination provides good cross-protection against MPX; however, the vaccination campaign ended in Africa in 1980, meaning that a large proportion of the population is currently unprotected against MPXV infection. Disease control hinges on deterring zoonotic exposure to the virus and, barring that, interrupting person-to-person spread. However, there are no FDA-approved therapies against MPX, and current vaccines are limited due to safety concerns. For this reason, new studies on pathogenesis, prophylaxis and therapeutics are still of great interest, not only for the scientific community but also for the governments concerned that MPXV could be used as a bioterror agent. In the present study, a new vaccination strategy approach based on three recombinant bovine herpesvirus 4 (BoHV-4 vectors, each expressing different MPXV glycoproteins, A29L, M1R and B6R were investigated in terms of protection from a lethal MPXV challenge in STAT1 knockout mice. BoHV-4-A-CMV-A29LgD106ΔTK, BoHV-4-A-EF1α-M1RgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK were successfully constructed by recombineering, and their capacity to express their transgene was demonstrated. A small challenge study was performed, and all three recombinant BoHV-4 appeared safe (no weight-loss or obvious adverse events following intraperitoneal administration. Further, BoHV-4-A-EF1α-M1RgD106ΔTK alone or in combination with BoHV-4-A-CMV-A29LgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK, was shown to be able to protect, 100% alone and 80% in combination, STAT1(-/- mice

Sensitive radioimmunosorbent assay for the detection of plant viruses. [Cauliflower mosaic virus, lettuce mosaic virus

Energy Technology Data Exchange (ETDEWEB)

Ghabrial, S A; Shepherd, R J [Kentucky Univ., Lexington (USA); California Univ., Davis (USA))

1980-06-01

A simple and highly sensitive radioimmunosorbent assay (RISA) for the detection of plant viruses is described. The RISA procedure is a microplate method based on the principle of 'double-antibody sandwich' and follows essentially the protocol of the enzyme-linked immunosorbent assay (ELISA) (Clark and Adams, 1977), with the exception that /sup 125/I-labelled ..gamma..-globulin is substituted for the ..gamma..-globulin enzyme conjugate; the bound /sup 125/I-..gamma..-globulin is dissociated by acidification from the double-antibody sandwich. The radioactivity is proportional to virus concentration, and cauliflower mosaic virus (CaMV) and lettuce mosaic virus (LMV) could be detected at concentrations as low as 5 and 2 ng/ml, respectively. Direct evidence of the adverse effects of conjugation with enzyme on the binding abilities of antibodies is presented. The RISA procedure should prove valuable with viruses for which the ELISA values are too low to be dependable.

Evapotranspiration seasonality across the Amazon Basin

Science.gov (United States)

Eiji Maeda, Eduardo; Ma, Xuanlong; Wagner, Fabien Hubert; Kim, Hyungjun; Oki, Taikan; Eamus, Derek; Huete, Alfredo

2017-06-01

Evapotranspiration (ET) of Amazon forests is a main driver of regional climate patterns and an important indicator of ecosystem functioning. Despite its importance, the seasonal variability of ET over Amazon forests, and its relationship with environmental drivers, is still poorly understood. In this study, we carry out a water balance approach to analyse seasonal patterns in ET and their relationships with water and energy drivers over five sub-basins across the Amazon Basin. We used in situ measurements of river discharge, and remotely sensed estimates of terrestrial water storage, rainfall, and solar radiation. We show that the characteristics of ET seasonality in all sub-basins differ in timing and magnitude. The highest mean annual ET was found in the northern Rio Negro basin (˜ 1497 mm year-1) and the lowest values in the Solimões River basin (˜ 986 mm year-1). For the first time in a basin-scale study, using observational data, we show that factors limiting ET vary across climatic gradients in the Amazon, confirming local-scale eddy covariance studies. Both annual mean and seasonality in ET are driven by a combination of energy and water availability, as neither rainfall nor radiation alone could explain patterns in ET. In southern basins, despite seasonal rainfall deficits, deep root water uptake allows increasing rates of ET during the dry season, when radiation is usually higher than in the wet season. We demonstrate contrasting ET seasonality with satellite greenness across Amazon forests, with strong asynchronous relationships in ever-wet watersheds, and positive correlations observed in seasonally dry watersheds. Finally, we compared our results with estimates obtained by two ET models, and we conclude that neither of the two tested models could provide a consistent representation of ET seasonal patterns across the Amazon.

An underground view of the Albuquerque Basin

Energy Technology Data Exchange (ETDEWEB)

Hawley, J.W.; Haase, C.S.; Lozinsky, R.P. [New Mexico Bureau of Mines and Mineral Resources, Socorro, NM (United States)

1995-12-31

Development of valid hydrogeologic models of New Mexico`s ``critical groundwater basins`` has been a long-term objective of the New Mexico Bureau of Mines and Mineral Resources (NMBMMR), a division of New Mexico Tech. The best possible information on basin hydrogeology is needed not only for incorporation in numerical models of groundwater-flow systems, which are necessary for proper management of limited water resources, but also for addressing public concerns relating to a wide range of important environmental issues. In the latter case, a hydrogeologist must be prepared to provide appropriate explanations of why groundwater systems behave physically and chemically as they do in both natural and man-disturbed situations. The paper describes the regional geologic setting, the geologic setting of the Albuquerque Basin, basin- and valley-fill stratigraphy, and the hydrogeologic model of the Albuquerque Basin. 77 refs., 6 figs., 1 tab.

K Basins fuel encapsulation and storage hazard categorization

International Nuclear Information System (INIS)

Porten, D.R.

1994-12-01

This document establishes the initial hazard categorization for K-Basin fuel encapsulation and storage in the 100 K Area of the Hanford site. The Hazard Categorization for K-Basins addresses the potential for release of radioactive and non-radioactive hazardous material located in the K-Basins and their supporting facilities. The Hazard Categorization covers the hazards associated with normal K-Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. The criteria categorizes a facility based on total curies per radionuclide located in the facility. Tables 5-3 and 5-4 display the results in section 5.0. In accordance with DOE-STD-1027 and the analysis provided in section 5.0, the K East Basin fuel encapsulation and storage activity and the K West Basin storage are classified as a open-quotes Category 2close quotes Facility

Performance analysis of double basin solar still with evacuated tubes

International Nuclear Information System (INIS)

Hitesh N Panchal; Shah, P. K.

2013-01-01

Solar still is a very simple device, which is used for solar distillation process. In this research work, double basin solar still is made from locally available materials. Double basin solar still is made in such a way that, outer basin is exposed to sun and lower side of inner basin is directly connected with evacuated tubes to increase distillate output and reducing heat losses of a solar still. The overall size of the lower basin is about 1006 mm x 325 mm x 380 mm, the outer basin is about 1006 mm x 536 mm x 100 mm Black granite gravel is used to increase distillate output by reducing quantity of brackish or saline water in the both basins. Several experiments have conducted to determine the performance of a solar still in climate conditions of Mehsana (latitude of 23 degree 59' and longitude of 72 degree 38'), Gujarat, like a double basin solar still alone, double basin solar still with different size black granite gravel, double basin solar still with evacuated tubes and double basin solar still with evacuated tubes and different size black granite gravel. Experimental results show that, connecting evacuated tubes with the lower side of the inner basin increases daily distillate output of 56% and is increased by 60%, 63% and 67% with average 10 mm, 20 mm and 30 mm size black granite gravel. Economic analysis of present double basin solar still is 195 days. (authors)

Geochemistry of the Late Paleozoic cherts in the Youjiang Basin: Implications for the basin evolution

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Huang Hu

2013-10-01

Full Text Available We analyzed the major and rare earth element compositions of siliceous deposits from the Upper Devonian Liujiang Formation, Lower Carboniferous Luzhai Formation, Lower–Middle Permian Sidazhai Formation and Tapi Formation, which are widely distributed as bedded cherts in the interplatform basinal successions of the Youjiang Basin. The Liujiang Formation and Luzhai Formation cherts generally have high Al/(Al+Fe+Mn values (0.38–0.94 and are non-hydrothermal cherts. These cherts are generally characterized by moderately negative Ce anomalies and high Y/Ho values relatived to PAAS, indicating that the Youjiang Basin might have evolved into an open rift basin during the Late Devonian–Early Carboniferous. The Sidazhai Formation cherts from Ziyun generally have high Al/(Al+Fe+Mn values (0.60–0.78, suggesting negligible contribution from a hydrothermal component. The Sidazhai Formation cherts from Hechi and the Tapi Formation cherts from Malipo generally have low Al/(Al+Fe+Mn values (0.09–0.41, indicating an intense hydrothermal input. Relatived to the Sidazhai Formation cherts, the Tapi Formation cherts have higher Ce/Ce* values (0.68±0.19 and lower Y/Ho values (41.83±13.27, which may be affected by the terrigenous input from the Vietnam Block. The Sidazhai Formation cherts from Ziyun and Hechi exhibit negative Ce anomalies (0.43±0.12, 0.33±0.17, respectively with high Y/Ho values (57.44±16.20, 46.02±4.27, respectively, resembling the geochemical characteristics of open-ocean basin cherts. These cherts were deposited on a passive continental margin adjacent to the Babu branch ocean, which may have contributed to upwelling. Detailed spatial studies on geochemical characteristics of the Late Paleozoic cherts can unravel the evolution of the Youjiang Basin.

Quantification of water resources uncertainties in the Luvuvhu sub-basin of the Limpopo river basin

Science.gov (United States)

Oosthuizen, N.; Hughes, D.; Kapangaziwiri, E.; Mwenge Kahinda, J.; Mvandaba, V.

2018-06-01

In the absence of historical observed data, models are generally used to describe the different hydrological processes and generate data and information that will inform management and policy decision making. Ideally, any hydrological model should be based on a sound conceptual understanding of the processes in the basin and be backed by quantitative information for the parameterization of the model. However, these data are often inadequate in many sub-basins, necessitating the incorporation of the uncertainty related to the estimation process. This paper reports on the impact of the uncertainty related to the parameterization of the Pitman monthly model and water use data on the estimates of the water resources of the Luvuvhu, a sub-basin of the Limpopo river basin. The study reviews existing information sources associated with the quantification of water balance components and gives an update of water resources of the sub-basin. The flows generated by the model at the outlet of the basin were between 44.03 Mm3 and 45.48 Mm3 per month when incorporating +20% uncertainty to the main physical runoff generating parameters. The total predictive uncertainty of the model increased when water use data such as small farm and large reservoirs and irrigation were included. The dam capacity data was considered at an average of 62% uncertainty mainly as a result of the large differences between the available information in the national water resources database and that digitised from satellite imagery. Water used by irrigated crops was estimated with an average of about 50% uncertainty. The mean simulated monthly flows were between 38.57 Mm3 and 54.83 Mm3 after the water use uncertainty was added. However, it is expected that the uncertainty could be reduced by using higher resolution remote sensing imagery.

M-area basin closure-Savannah River Site

International Nuclear Information System (INIS)

McMullin, S.R.; Horvath, J.G.

1991-01-01

M-Area, on the Savannah River Site, processes raw materials and manufactures fuel and target rods for reactor use. Effluent from these processes were discharged into the M-Area settling basin and Lost Lake, a natural wetland. The closure of this basin began in 1988 and included the removal and stabilization of basin fluids, excavation of all contaminated soils from affected areas and Lost Lake, and placement of all materials in the bottom of the emptied basin. These materials were covered with a RCRA style cap, employing redundant barriers of kaolin clay and geosynthetic material. Restoration of excavated uplands and wetlands is currently underway

Reconnaissance coal study in the Susitna basin, 2014

Science.gov (United States)

David L. LePain,; Stanley, Richard G.; Harun, Nina T.; Helmold, Kenneth T.; Tsigonis, Rebekah

2015-01-01

The Alaska Division of Geological & Geophysical Surveys (DGGS) conducted fieldwork during the summer of 2014 in the Susitna basin as part of an ongoing evaluation of the hydrocarbon potential of frontier basins, particularly those near the Railbelt region (for example, Decker and others, 2013; Gillis and others, 2013). Topical studies associated with this recent work include sedimentary facies analysis (LePain and others, 2015) and structural geology investigations (Gillis and others, 2015). The Susitna basin contains coal-bearing Paleogene and Neogene strata correlative with formations that host oil and gas in Cook Inlet basin to its south. Isotopic signatures of natural gas reservoired in the Miocene/Pliocene Sterling and Miocene Beluga Formations suggest a biogenic origin for Cook Inlet gas (Claypool and others, 1980). To assess the biogenic gas potential of the Susitna basin, it is important to obtain information from its coal-bearing units.Characteristics of coal, such as maturity/rank and cleat development are key parameters influencing viability of a biogenic gas system (Laubach and others, 1998). In an early study of the Susitna basin (Beluga–Yentna region), Barnes (1966) identified, analyzed, and recognized potentially valuable subbituminous coal resources at Fairview Mountain, Canyon Creek, and Johnson Creek. Merritt (1990), in a sedimentological study to evaluate surface coal mining potential of the Tertiary rocks of the Susitna basin (Susitna lowland), concluded that the basin contained several billion tons of mineable reserves. This preliminary report offers a brief summary of new information on coals in the Susitna Basin acquired during associated stratigraphic studies (see LePain and others, 2015). 

Release of Virus from Lymphoid Tissue Affects Human Immunodeficiency Virus Type 1 and Hepatitis C Virus Kinetics in the Blood

NARCIS (Netherlands)

Müller, Viktor; Marée, Athanasius F.M.; Boer, R.J. de

2000-01-01

Kinetic parameters of human immunodeficiency virus type 1 (HIV-1) and hepatitis C virus (HCV) infections have been estimated from plasma virus levels following perturbation of the chronically infected (quasi-) steady state. We extend previous models by also considering the large pool of virus

Antiviral activity of a Bacillus sp: P34 peptide against pathogenic viruses of domestic animals

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Débora Scopel e Silva

2014-09-01

Full Text Available P34 is an antimicrobial peptide produced by a Bacillus sp. strain isolated from the intestinal contents of a fish in the Brazilian Amazon basin with reported antibacterial activity. The aim of this work was to evaluate the peptide P34 for its in vitro antiviral properties against canine adenovirus type 2 (CAV-2, canine coronavirus (CCoV, canine distemper virus (CDV, canine parvovirus type 2 (CPV-2, equine arteritis virus (EAV, equine influenza virus (EIV, feline calicivirus (FCV and feline herpesvirus type 1 (FHV-1. The results showed that the peptide P34 exhibited antiviral activity against EAV and FHV-1. The peptide P34 inhibited the replication of EAV by 99.9% and FHV-1 by 94.4%. Virucidal activity was detected only against EAV. When P34 and EAV were incubated for 6 h at 37 °C the viral titer reduced from 10(4.5 TCID50 to 10(2.75 TCID50, showing a percent of inhibition of 98.6%. In conclusion, our results demonstrated that P34 inhibited EAV and FHV-1 replication in infected cell cultures and it showed virucidal activity against EAV. Since there is documented resistance to the current drugs used against herpesviruses and there is no treatment for equine viral arteritis, it is advisable to search for new antiviral compounds to overcome these infections.

Hepatitis E Virus and Related Viruses in Animals.

Science.gov (United States)

Thiry, D; Mauroy, A; Pavio, N; Purdy, M A; Rose, N; Thiry, E; de Oliveira-Filho, E F

2017-02-01

Hepatitis E is an acute human liver disease in healthy individuals which may eventually become chronic. It is caused by the hepatitis E virus (HEV) and can have a zoonotic origin. Nearly 57,000 people die yearly from hepatitis E-related conditions. The disease is endemic in both developing and developed countries with distinct epidemiologic profiles. In developing countries, the disease is associated with inadequate water treatment, while in developed countries, transmission is associated with animal contact and the ingestion of raw or uncooked meat, especially liver. All human HEV are grouped into at least four genotypes, while HEV or HEV-related viruses have been identified in an increasing number of domestic and wild animal species. Despite a high genetic diversity, only one single HEV serotype has been described to date for HEV genotypes 1-4. The discovery of new HEV or HEV-related viruses leads to a continuing increase in the number of genotypes. In addition, the genome organization of all these viruses is variable with overlapping open reading frames (ORF) and differences in the location of ORF3. In spite of the role of some domestic and wild animals as reservoir, the origin of HEV and HEV-related viruses in humans and animals is still unclear. This review discusses aspects of the detection, molecular virology, zoonotic transmission and origin of HEV and HEV-related viruses in the context of 'One Health' and establishes a link between the previous and the new taxonomy of this growing virus family. © 2015 Blackwell Verlag GmbH.

78 FR 65609 - Medicine Bow-Routt National Forests and Thunder Basin National Grassland; Wyoming; Thunder Basin...

Science.gov (United States)

2013-11-01

... National Grassland; Wyoming; Thunder Basin National Grassland Prairie Dog Amendment Environmental Impact... Cooperating Agencies. No changes to the Proposed Action or Purpose of and Need for Action have been made... alternatives will be analyzed in the Thunder Basin National Grassland Prairie Dog Amendment EIS. The EIS will...

"The evil virus cell": Students' knowledge and beliefs about viruses.

Science.gov (United States)

Simon, Uwe K; Enzinger, Sonja M; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

Herpes viruses and human papilloma virus in nasal polyposis and controls.

Science.gov (United States)

Ioannidis, Dimitrios; Lachanas, Vasileios A; Florou, Zoe; Bizakis, John G; Petinaki, Efthymia; Skoulakis, Charalampos E

2015-01-01

Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. To compare the prevalence of human herpes viruses (1-6) and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4%) versus controls (4/38; 10.5%), but the difference did not reach significance (p=0.06). Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29%) versus controls (10/38; 26.32%, p=0.13). In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%), and another was cytomegalovirus-positive (1/91; 1.1%), versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59) and low-risk-human papilloma viruses (6, 11). Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis. Copyright © 2015 Associação Brasileira de Otorrinolaringologia e Cirurgia Cérvico-Facial. Published by Elsevier Editora Ltda. All rights reserved.

State of stress in exhumed basins and implications for fluid flow: insights from the Illizi Basin, Algeria

KAUST Repository

English, Joseph M.

2017-05-31

The petroleum prospectivity of an exhumed basin is largely dependent on the ability of pre-existing traps to retain oil and gas volumes during and after the exhumation event. Although faults may act as lateral seals in petroleum traps, they may start to become hydraulically conductive again and enable fluid flow and hydrocarbon leakage during fault reactivation. We constrain the present day in situ stresses of the exhumed Illizi Basin in Algeria and demonstrate that the primary north–south and NW–SE (vertical strike-slip) fault systems in the study area are close to critical stress (i.e. an incipient state of shear failure). By contrast, the overpressured and unexhumed Berkine Basin and Hassi Messaoud areas to the north do not appear to be characterized by critical stress conditions. We present conceptual models of stress evolution and demonstrate that a sedimentary basin with benign in situ stresses at maximum burial may change to being characterized by critical stress conditions on existing fault systems during exhumation. These models are supportive of the idea that the breaching of a closed, overpressured system during exhumation of the Illizi Basin may have been a driving mechanism for the regional updip flow of high-salinity formation water within the Ordovician reservoirs during Eocene–Miocene time. This work also has implications for petroleum exploration in exhumed basins. Fault-bounded traps with faults oriented at a high angle to the maximum principal horizontal stress direction in strike-slip or normal faulting stress regimes are more likely to have retained hydrocarbons in exhumed basins than fault-bounded traps with faults that are more optimally oriented for shear failure and therefore have a greater propensity to become critically stressed during exhumation.

Water equivalent of snow survey of the Red River Basin and Heart/Cannonball River Basin, March 1978

International Nuclear Information System (INIS)

Feimster, E.L.

1979-10-01

The water equivalent of accumulated snow was estimated in the Red River and Heart/Cannonball River basins and surrounding areas in North Dakota during the period 8 to 17 March 1978. A total of 570 km were flown, covering a 274 km section of the Red River Basin watershed. These lines had been surveyed in March 1974. Twelve flight lines were flown over the North Dakota side of the Red River from a point 23 km south of the Canadian border southward to the city of Fargo, North Dakota. The eight flight lines flown over the Minnesota side of the Red River extended from 23 km south of the Canadian border southward to Breckenridge, Minnesota. Using six flight lines, a total of 120 km were flown in the Heart/Cannonball River Basin, an area southwest of the city of Bismark, North Dakota. This was the first such flight in the Heart/Cannonball River Basin area. Computed weighted average water equivalents on each flight line in the Red River Basin ranged from 4.8 cm to 12.7 cm of water, averaging 7.6 cm for all lines. In the Heart/Cannonball River Basin, the weighted water equivalent ranged from 8.9 cm to 19.1 cm of water, averaging 12.7 cm for all lines. The method used employs the measurement of the natural gamma rays both before and after snow covers the ground

Computer Virus and Trends

OpenAIRE

Tutut Handayani; Soenarto Usna,Drs.MMSI

2004-01-01

Since its appearance the first time in the mid-1980s, computer virus has invited various controversies that still lasts to this day. Along with the development of computer systems technology, viruses komputerpun find new ways to spread itself through a variety of existing communications media. This paper discusses about some things related to computer viruses, namely: the definition and history of computer viruses; the basics of computer viruses; state of computer viruses at this time; and ...

Viruses in reptiles

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Ariel Ellen

2011-09-01

Full Text Available Abstract The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself. 1. Introduction 2. Methods for working with reptilian viruses 3. Reptilian viruses described by virus families 3.1. Herpesviridae 3.2. Iridoviridae 3.2.1 Ranavirus 3.2.2 Erythrocytic virus 3.2.3 Iridovirus 3.3. Poxviridae 3.4. Adenoviridae 3.5. Papillomaviridae 3.6. Parvoviridae 3.7. Reoviridae 3.8. Retroviridae and inclusion body disease of Boid snakes 3.9. Arboviruses 3.9.1. Flaviviridae 3

The role of wildlife in bluetongue virus maintenance in Europe: lessons learned after the natural infection in Spain.

Science.gov (United States)

Ruiz-Fons, Francisco; Sánchez-Matamoros, Almudena; Gortázar, Christian; Sánchez-Vizcaíno, José Manuel

2014-03-01

Bluetongue (BT) is a re-emergent vector-borne viral disease of domestic and wild ruminants caused by bluetongue virus (BTV), a member of the genus Orbivirus. A complex multi-host, multi-vector and multi-pathogen (26 serotypes) transmission and maintenance network has recently emerged in Europe, and wild ruminants are regarded as an important node in this network. This review analyses the reservoir role of wild ruminants in Europe, identifying gaps in knowledge and proposing actions. Wild ruminant species are indicators of BTV circulation. Excepting the mouflon (Ovis aries musimon), European wild ungulates do not develop clinical disease. Diagnostic techniques used in wildlife do not differ from those used in domestic ruminants provided they are validated. Demographic, behavioural and physiological traits of wild hosts modulate their relationship with BTV vectors and with the virus itself. While BTV has been eradicated from central and northern Europe, it is still circulating in the Mediterranean Basin. We propose that currently two BTV cycles coexist in certain regions of the Mediterranean Basin, a wild one largely driven by deer of the subfamily Cervinae and a domestic one. These are probably linked through shared Culicoides vectors of several species. We suggest that wildlife might be contributing to this situation through vector maintenance and virus maintenance. Additionally, differences in temperature and other environmental factors add complexity to the Mediterranean habitats as compared to central and northern European ones. Intervention options in wildlife populations are limited. There is a need to know the role of wildlife in maintaining Culicoides populations, and to know which Culicoides species mediate the wildlife-livestock-BTV transmission events. There is also a clear need to study more in depth the links between Cervinae deer densities, environmental factors and BTV maintenance. Regarding disease control, we suggest that research efforts should be

Value of the principles of ''isolation of basins and their boundaries'' and ''isolation of basins and elevations'' in prospecting for oil and gas in the oil and gas basin of China

Energy Technology Data Exchange (ETDEWEB)

Chzhan, V.; Li, Yu.; Se, M.

1982-01-01

A feature of the Chinese oil and gas basins is their fracturing into a large number (to several dozen in one oil and gas basin) isolated basins which are controlled by fault disorders. In these basins in which thick masses of Mesozoic and mainly Cenozoic sedimentary rocks are developed, the main volumes of source rocks are concentrated. Migration of hydrocarbons usually occurs to short distances not exceeding tens of kilometers. From the experience of prospecting and exploration back in the 1950's it was established that thick masses in the central zones of the basins are favorable for processes of hydrocarbon generation, while accumulation occurs in the elevated peripheral parts of the basins and in the regions of the central elevations. The zones of articulation of the central elevations and the edges of the basins are very promising for prospecting for local structures. Examples of large fields which are subordinate to these laws are the largest oil fields in China, Lyakhoe, Dagan and Shenli which are located along the edges of the Bokhayvan basin in the North Chinese oil and gas basin and the Datsin field which is confined to the central elevation of the Sunlyao basin.

Genomic characterisation of Almpiwar virus, Harrison Dam virus and Walkabout Creek virus; three novel rhabdoviruses from northern Australia

Directory of Open Access Journals (Sweden)

Jane McAllister

2014-09-01

Full Text Available Rhabdoviridae represent a diverse group of viruses with the potential to cause disease in humans, animals and plants. Currently there are nine genera in the family; however a large number of rhabdoviruses remain unassigned. Here we characterise three novel rhabdoviruses genomes. Almpiwar virus (ALMV, isolated from skinks in northern Queensland, is the first completely sequenced rhabdovirus from squamates, with serological studies indicating multiple animal host species. Harrison Dam virus (HARDV and Walkabout Creek virus (WACV were isolated from mosquitoes in the Northern Territory and biting midges in southern Queensland respectively and their vertebrate hosts remain unknown. Serological cross-neutralisation tests with other Australian rhabdoviruses indicate that ALMV, WACV and HARDV are distinct viruses with little antigenic cross-reactivity. Next-generation sequencing revealed that all viruses encode the core proteins common to rhabdoviruses (N, P, M, G and L, plus additional ORFs between the M and G genes. HARDV also contains a small ORF between the G and L genes. Phylogenetic analysis of N and L proteins suggests that HARDV and WACV share a common lineage with the tupaviruses and Sandjimba group, whereas ALMV is a distinct and divergent virus showing no clear relationship to any rhabdovirus except the recently characterised Niahka virus (NIAV.

Ecohydrological Controls on Intra-Basin Alpine Subarctic Water Balances

Science.gov (United States)

Carey, S. K.; Ziegler, C. M.

2007-12-01

In the mountainous Canadian subarctic, elevation gradients control the disposition of vegetation, permafrost, and characteristics of the soil profile. How intra-basin ecosystems combine to control catchment-scale water and biogeochimcal cycling is uncertain. To this end, a multi-year ecohydrological investigation was undertaken in Granger Basin (GB), a 7.6 km2 sub-basin of the Wolf Creek Research Basin, Yukon Territory, Canada. GB was divided into four sub-basins based on the dominant vegetation and permafrost status, and the timing and magnitude of hydrological processes were compared using hydrometric and hydrochemical methods. Vegetation plays an important role in end-of-winter snow accumulation as snow redistribution by wind is controlled by roughness length. In sub-basins of GB with tall shrubs, snow accumulation is enhanced compared with areas of short shrubs and tundra vegetation. The timing of melt was staggered with elevation, although melt-rates were similar among the sub-basins. Runoff was enhanced at the expense of infiltration in tall shrub areas due to high snow water equivalent and antecedent soil moisture. In the high-elevation tundra sub-basin, thin soils with cold ground temperatures resulted in increased surface runoff. For the freshet period, the lower and upper sub-basins accounted for 81 % of runoff while accounting for 58 % of the total basin area. Two-component isotopic hydrograph separation revealed that during melt, pre-event water dominated in all sub-basins, yet those with greater permafrost disposition and taller shrubs had increased event-water. Dissolved organic carbon (DOC) spiked prior to peak freshet in each sub-basin except for the highest with thin soils, and was associated with flushing of surficial organic soils. For the post-melt period, all sub-basins have similar runoff contributions. Solute and stable isotope data indicate that in sub-basins dominated by permafrost, supra-permafrost runoff pathways predominate as flow

Distribution, Statistics, and Resurfacing of Large Impact Basins on Mercury

Science.gov (United States)

Fassett, Caleb I.; Head, James W.; Baker, David M. H.; Chapman, Clark R.; Murchie, Scott L.; Neumann, Gregory A.; Oberst, Juergen; Prockter, Louise M.; Smith, David E.; Solomon, Sean C.;

Implementing Integrated River Basin Management in China

Directory of Open Access Journals (Sweden)

Dorri G. J. te Boekhorst

2010-06-01

Full Text Available This paper examines the role of the World Wildlife Fund for Nature China as policy entrepreneur in China. It illustrates the ways in which the World Wildlife Fund for Nature is active in promoting integrated river basin management in the Yangtze River basin and how the efforts at basin level are matched with the advice of the China Council for International Cooperation on Environment and Development task force on integrated river basin management to the national government of China. This article demonstrates that the World Wildlife Fund for Nature uses various strategies of different types to support a transition process towards integrated river basin management. Successful deployment of these strategies for change in environmental policy requires special skills, actions, and attitudes on the part of the policy entrepreneur, especially in China, where the government has a dominant role regarding water management and the position of policy entrepeneurs is delicate.

Are calanco landforms similar to river basins?

Science.gov (United States)

Caraballo-Arias, N A; Ferro, V

2017-12-15

In the past badlands have been often considered as ideal field laboratories for studying landscape evolution because of their geometrical similarity to larger fluvial systems. For a given hydrological process, no scientific proof exists that badlands can be considered a model of river basin prototypes. In this paper the measurements carried out on 45 Sicilian calanchi, a type of badlands that appears as a small-scale hydrographic unit, are used to establish their morphological similarity with river systems whose data are available in the literature. At first the geomorphological similarity is studied by identifying the dimensionless groups, which can assume the same value or a scaled one in a fixed ratio, representing drainage basin shape, stream network and relief properties. Then, for each property, the dimensionless groups are calculated for the investigated calanchi and the river basins and their corresponding scale ratio is evaluated. The applicability of Hack's, Horton's and Melton's laws for establishing similarity criteria is also tested. The developed analysis allows to conclude that a quantitative morphological similarity between calanco landforms and river basins can be established using commonly applied dimensionless groups. In particular, the analysis showed that i) calanchi and river basins have a geometrically similar shape respect to the parameters Rf and Re with a scale factor close to 1, ii) calanchi and river basins are similar respect to the bifurcation and length ratios (λ=1), iii) for the investigated calanchi the Melton number assumes values less than that (0.694) corresponding to the river case and a scale ratio ranging from 0.52 and 0.78 can be used, iv) calanchi and river basins have similar mean relief ratio values (λ=1.13) and v) calanchi present active geomorphic processes and therefore fall in a more juvenile stage with respect to river basins. Copyright © 2017 Elsevier B.V. All rights reserved.

Emergence and resurgence of the viral hemorrhagic septicemia virus (Novirhabdovirus, Rhabdoviridae, Mononegavirales

Directory of Open Access Journals (Sweden)

Robert Kim

2011-01-01

Full Text Available Viral hemorrhagic septicemia virus (VHSV is one of the most serious pathogens of finfish worldwide in terms of its wide host-range, pathogenicity, disease course, and mortality rates. The disease was first documented in the 1930s in Europe in association with heavy losses in rainbow. Data collected over 50 years show that VHSV is a virus of marine origin: its ability to alternate between marine and freshwater environments remains an enigma which requires further investigation. In 2003, VHSV invaded the Laurentian Great Lakes basin causing devastating losses. VHSV is believed to have negative impacts on a number of important Atlantic, Pacific, and Great Lakes fish species. Phylogenetic analysis has offered clues into the geographic and host range of the virus, but sporadic outbreaks of the disease in uncommon locations have imparted unforeseen challenges in delineating the virus’ regional distribution. The virus’ ability to gain access to aquaculture farms has also positioned it as a disease of utmost priority once detected in these settings. Current diagnostic methods, while greatly improved, are hampered by the variability of disease course among susceptible species. In general, VHSV causes severe degeneration in the hematopoietic tissues of affected fish. Based on historical and current data, it is feared that VHSV will continue to mutate, expand to other geographic areas, and infect new host species. As a result, immediate international attention and coordination of efforts are needed. The objective of this review article is to provide an updated synopsis on the current status of VHSV epizootiology and pathogenicity.

Classification of Prairie basins by their hysteretic connected functions

Science.gov (United States)

Shook, K.; Pomeroy, J. W.

2017-12-01

Diagnosing climate change impacts in the post-glacial landscapes of the North American Prairies through hydrological modelling is made difficult by drainage basin physiography. The region is cold, dry and flat with poorly developed stream networks, and so the basin area that is hydrologically connected to the stream outlet varies with basin depressional storage. The connected area controls the contributing area for runoff reaching the stream outlet. As depressional storage fills, ponds spill from one to another; the chain of spilling ponds allows water to flow over the landscape and increases the connected area of the basin. As depressional storage decreases, the connected fraction drops dramatically. Detailed, fine-scale models and remote sensing have shown that the relationship between connected area and the depressional storage is hysteretic in Prairie basins and that the nature of hysteresis varies with basin physiography. This hysteresis needs to be represented in hydrological models to calculate contributing area, and therefore streamflow hydrographs. Parameterisations of the hysteresis are needed for large-scale models used for climate change diagnosis. However, use of parameterisations of hysteresis requires guidance on how to represent them for a particular basin. This study shows that it is possible to relate the shape of hysteretic functions as determined by detailed models to the overall physiography of the basin, such as the fraction of the basin below the outlet, and remote sensing estimates of depressional storage, using the size distribution and location of maximum ponded water areas. By classifying basin physiography, the hysteresis of connected area - storage relationships can be estimated for basins that do not have high-resolution topographic data, and without computationally-expensive high-resolution modelling.

Powassan (POW) Virus Basics

Science.gov (United States)

... Health Professionals Related Topics For International Travelers Powassan Virus Disease Basics Download this fact sheet formatted for ... Virus Disease Fact Sheet (PDF) What is Powassan virus? Powassan virus is a tickborne flavivirus that is ...

Petroleum prospectivity of the Canada Basin, Arctic Ocean

Science.gov (United States)

Grantz, A.; Hart, P.E.

2011-01-01

Reconnaissance seismic reflection data indicate that Canada Basin is a remnant of the Amerasia Basin of the Arctic Ocean that lies south of the Alpha-Mendeleev Large Igneous Province, which was constructed on the northern part of the Amerasia Basin between about 127 and 89-75 Ma. Canada Basin is filled with Early Jurassic to Holocene detritus from the Mackenzie River system, which drains the northern third of interior North America, with sizable contributions from Alaska and Northwest Canada. Except for the absence of a salt- and shale-bearing mobile substrate Canada Basin is analogous to the Mississippi Delta and the western Gulf of Mexico. Canada Basin contains about 7 to >14 km of sediment beneath the Mackenzie Prodelta on the southeast, 6 to 7 km of sediment beneath the abyssal plain on the west, and roughly 5 or 6 million cubic km of sediment. About three fourths of the basin fill generates low amplitude seismic reflections, interpreted to represent hemiplegic deposits, and a fourth of the fill generates interbedded lenses to extensive layers of moderate to high amplitude reflections interpreted to represent unconfined turbidite and amalgamated channel deposits. Extrapolation from Arctic Alaska and Northwest Canada suggests that three fourths of the section in Canada Basin may contain intervals of hydrocarbon source rocks and the apparent age of the basin suggests that it contains three of the six stratigraphic intervals that together provided >90?? of the World's discovered reserves of oil and gas.. Worldwide heat flow averages suggest that about two thirds of Canada Basin lies in the oil or gas window. At least five types of structural or stratigraphic features of local to regional occurrence offer exploration targets in Canada Basin. These consist of 1) a belt of late Eocene to Miocene shale-cored detachment folds containing with at least two anticlines that are capped by beds with bright spots, 2) numerous moderate to high amplitude reflection packets

Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

Energy Technology Data Exchange (ETDEWEB)

Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Schriewer, Jill [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Evans, David H. [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Buller, R. Mark [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Barry, Michele, E-mail: michele.barry@ualberta.ca [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada)

2014-05-15

Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus.

Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

International Nuclear Information System (INIS)

Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee; Schriewer, Jill; Evans, David H.; Buller, R. Mark; Barry, Michele

2014-01-01

Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus

How Hepatitis D Virus Can Hinder the Control of Hepatitis B Virus

NARCIS (Netherlands)

Xiridiou, M.; Borkent-Raven, B.; Hulshof, J.; Wallinga, J.

2009-01-01

Background: Hepatitis D (or hepatitis delta) virus is a defective virus that relies on hepatitis B virus (HBV) for transmission; infection with hepatitis D can occur only as coinfection with HBV or superinfection of an existing HBV infection. Because of the bond between the two viruses, control

9 CFR 113.215 - Bovine Virus Diarrhea Vaccine, Killed Virus.

Science.gov (United States)

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Bovine Virus Diarrhea Vaccine, Killed Virus. 113.215 Section 113.215 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND ANALOGOUS PRODUCTS; ORGANISMS AND VECTORS STANDARD...

Influenza (Flu) Viruses

Science.gov (United States)

... Types Seasonal Avian Swine Variant Pandemic Other Influenza (Flu) Viruses Language: English (US) Español Recommend on Facebook ... influenza circulate and cause illness. More Information about Flu Viruses Types of Influenza Viruses Influenza A and ...

Petroleum geology framework, southeast Bowser Basin, British Columbia

Energy Technology Data Exchange (ETDEWEB)

Haggart, J.W. [Geological Survey of Canada, Vancouver, BC (Canada); Mahoney, J.B. [Wisconsin Univ., Eau Claire, WS (United States). Dept. of Geology

2003-07-01

There are significant coal resources in the northern regions of the Bowser basin in north-central British Columbia. However, the resource potential of the southern part of the basin has not been assessed, therefore the hydrocarbon potential is not known. Geological maps indicate several Mesozoic clastic and volcanic units across the southern part of the basin. Two stratigraphic intervals of the southern Bowser basin are considered to be potential source rocks within the Jurassic-Cretaceous strata. The fine-grained clastic rocks of the Bowser Lake Group contain significant amounts of carbonaceous material or organic matter. Well developed cleavage indicates that the rocks may be thermally over mature. This paper described potential reservoir rocks within the basin, along with their thermal maturation and conceptual play. 4 figs.

Petroleum prospectivity of the Canada Basin, Arctic Ocean

Science.gov (United States)

Grantz, Arthur; Hart, Patrick E.

2012-01-01

Reconnaissance seismic reflection data indicate that Canada Basin is a >700,000 sq. km. remnant of the Amerasia Basin of the Arctic Ocean that lies south of the Alpha-Mendeleev Large Igneous Province, which was constructed across the northern part of the Amerasia Basin between about 127 and 89-83.5 Ma. Canada Basin was filled by Early Jurassic to Holocene detritus from the Beaufort-Mackenzie Deltaic System, which drains the northern third of interior North America, with sizable contributions from Alaska and Northwest Canada. The basin contains roughly 5 or 6 million cubic km of sediment. Three fourths or more of this volume generates low amplitude seismic reflections, interpreted to represent hemipelagic deposits, which contain lenses to extensive interbeds of moderate amplitude reflections interpreted to represent unconfined turbidite and amalgamated channel deposits.Extrapolation from Arctic Alaska and Northwest Canada suggests that three fourths of the section in Canada Basin is correlative with stratigraphic sequences in these areas that contain intervals of hydrocarbon source rocks. In addition, worldwide heat flow averages suggest that about two thirds of Canada Basin lies in the oil or gas windows. Structural, stratigraphic and combined structural and stratigraphic features of local to regional occurrence offer exploration targets in Canada Basin, and at least one of these contains bright spots. However, deep water (to almost 4000 m), remoteness from harbors and markets, and thick accumulations of seasonal to permanent sea ice (until its possible removal by global warming later this century) will require the discovery of very large deposits for commercial success in most parts of Canada Basin. ?? 2011 Elsevier Ltd.

[The growth of attenuated strains of canine parvovirus, mink enteritis virus, feline panleukopenia virus, and rabies virus on various types of cell cultures].

Science.gov (United States)

Zuffa, T

1987-10-01

The growth characteristics were studied in the attenuated strains of canine parvovirus CPVA-BN 80/82, mink enteritis virus MEVA-BN 63/82 and feline panleucopenia virus FPVA-BN 110/83 on the stable feline kidney cell line FE, and in the attenuated canine distemper virus CDV-F-BN 10/83 on chicken embryo cell cultures (KEB) and cultures of the stable cell line VERO. When the FE cultures were infected with different parvoviruses in cell suspension at MOI 2-4 TKID50 per cell, the first multiplication of the intracellular virus was recorded 20 hours p. i. In the canine parvovirus, the content of intracellular and extracellular virus continued increasing parallelly until the fourth day; then, from the fourth to the sixth day, the content of extracellular virus still increased whereas that of intracellular virus fell rapidly. In the case of the mink enteritis virus the release of the virus into the culture medium continued parallelly with the production of the cellular virus until the sixth day. In the case of the feline panleucopenia virus the values concerning free virus and virus bound to cells were lower, starting from the second day p. i. When KEB or VERO cultures were infected in cell suspension with the canine distemper virus at MOI about 0.004 per 1 cell, the replicated intracellular virus was first recorded in the KEB cultures five hours after infection but in the VERO cultures only 20 hours after infection, with a timely release of the virus into the culture medium in both kinds of tissue. In the KEB and VERO cultures the highest values of infection titres were recorded on the fourth day p. i., the course of virus multiplication on the cells being parallel with its release into the culture medium.

Hydrogeology of the West Siberian Basin

International Nuclear Information System (INIS)

Foley, M.G.; Bradley, D.J.; Cole, C.R.

1996-01-01

Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in extensive radioactive contaminant releases to the environment in western Siberia. We are developing three-dimensional numerical models of the hydrogeology and potential contaminant migration in the West Siberian Basin. We have assumed that ground-water flow in the West Siberian Basin is topographically driven, with recharge to the basin occurring in the highlands on the west, east, and south, and internal discharge localized in numerous river valleys and lakes that ultimately discharge north to the ocean. We are modeling the regional hydrogeology as three-dimensional, steady-state, saturated flow that is recharged from above. We acquired topographic, geologic, hydrostratigraphic, hydrogeologic, and water-balance data for the West Siberian Basin and constructed a regional water table. We correlated and combined 70 different rock types derived from published descriptions of West Siberian Basin rocks into 17 rock types appropriate for assignment of hydrogeologic properties on the basis of spatial heterogeneity and constituent (i.e., sand, silt, and clay) diversity. Examination of resulting three-dimensional assemblages of rock types showed that they were consistent with published and inferred paleogeography and depositional processes. Calibrating the basin's moisture balance (i.e., recharge and discharge) to the derived water table determined plausible input parameter values for unknowns such as hydraulic conductivities. The general directions of calculated ground-water flow suggest that major rivers act as discharge areas, with upwelling below the rivers extending down into the basement rocks, and that ground-water divides that penetrate the entire thickness of the model are evident between major rivers

GRAIL Gravity Observations of the Transition from Complex Crater to Peak-Ring Basin on the Moon: Implications for Crustal Structure and Impact Basin Formation

Science.gov (United States)

Baker, David M. H.; Head, James W.; Phillips, Roger J.; Neumann, Gregory A.; Bierson, Carver J.; Smith, David E.; Zuber, Maria T.

2017-01-01

High-resolution gravity data from the Gravity Recovery and Interior Laboratory (GRAIL) mission provide the opportunity to analyze the detailed gravity and crustal structure of impact features in the morphological transition from complex craters to peak-ring basins on the Moon. We calculate average radial profiles for free-air anomalies and Bouguer anomalies for peak-ring basins, proto-basins, and the largest complex craters. Complex craters and proto-basins have free-air anomalies that are positively correlated with surface topography, unlike the prominent lunar mascons (positive free-air anomalies in areas of low elevation) associated with large basins. The Bouguer gravity anomaly profiles of complex craters are highly irregular, with central positive anomalies that are generally absent or not clearly tied to interior morphology. In contrast, gravity profiles for peak-ring basins (approx. 200 km to 580 km) are much more regular and are highly correlated with surface morphology. A central positive Bouguer anomaly is confined within the peak ring and a negative Bouguer anomaly annulus extends from the edge of the positive anomaly outward to about the rim crest. A number of degraded basins lacking interior peak rings have diameters and gravity patterns similar to those of well-preserved peak-ring basins. If these structures represent degraded peak-ring basins, the number of peak-ring basins on the Moon would increase by more than a factor of two to 34. The gravity anomalies within basins are interpreted to be due to uplift of the mantle confined within the peak ring and an annulus of thickened crust between the peak ring and rim crest. We hypothesize that mantle uplift is influenced by interaction between the transient cavity and the mantle. Further, mascon formation is generally disconnected from the number of basin rings formed and occurs over a wide range of basin sizes. These observations have important implications for models of basin and mascon formation on the

Proterozoic intracontinental basin: The Vindhyan example

Indian Academy of Sciences (India)

basins display marked similarities in their lithology, depositional setting and stratigraphic architecture. (Naqvi and Rogers 1987). This note sum- marises the stratigraphy, stratal architecture, sed- imentology and geochronology of the Vindhyan. Supergroup occurring in the Son valley region. (figure 1). 2. The Vindhyan basin.

sedimentology, depositional environments and basin evolution

African Journals Online (AJOL)

Preferred Customer

ABSTRACT: The Inter-Trappean coal and oil shale-bearing sedimentation in the Delbi-Moye Basin ... accompanied by passive subsidence. ... margins, whereas the concentration of fine-grained clastic sediments and ..... concentrated at the marginal areas of the basin. .... faults favoured the accumulation of alluvial fan.

Viruses of asparagus.

Science.gov (United States)

Tomassoli, Laura; Tiberini, Antonio; Vetten, Heinrich-Josef

2012-01-01

The current knowledge on viruses infecting asparagus (Asparagus officinalis) is reviewed. Over half a century, nine virus species belonging to the genera Ilarvirus, Cucumovirus, Nepovirus, Tobamovirus, Potexvirus, and Potyvirus have been found in this crop. The potyvirus Asparagus virus 1 (AV1) and the ilarvirus Asparagus virus 2 (AV2) are widespread and negatively affect the economic life of asparagus crops reducing yield and increasing the susceptibility to biotic and abiotic stress. The main properties and epidemiology of AV1 and AV2 as well as diagnostic techniques for their detection and identification are described. Minor viruses and control are briefly outlined. Copyright © 2012 Elsevier Inc. All rights reserved.

Viruses and Breast Cancer

Science.gov (United States)

Lawson, James S.; Heng, Benjamin

2010-01-01

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix. PMID:24281093

Viruses and Breast Cancer

International Nuclear Information System (INIS)

Lawson, James S.; Heng, Benjamin

2010-01-01

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix

Viruses and Breast Cancer

Energy Technology Data Exchange (ETDEWEB)

Lawson, James S., E-mail: james.lawson@unsw.edu.au; Heng, Benjamin [School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney (Australia)

2010-04-30

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix.

The tritium balance of the Ems river basin

International Nuclear Information System (INIS)

Krause, W.J.

1989-01-01

For the Ems river basin, as a fine example of a Central European lowland basin, an inventory of the tritium distribution is presented for the hydrologic years 1951 to 1983. On the basis of a balance model, the tritium contents in surface waters and groundwater of the Ems river basin are calculated, using known and extrapolated tritium input data and comparing them with the corresponding values measured since 1974. A survey of tritium flows occurring in this basin is presented, taking meteorologic and hydrologic facts into account. (orig.)

Rifting Thick Lithosphere - Canning Basin, Western Australia

Science.gov (United States)

Czarnota, Karol; White, Nicky

2016-04-01

The subsidence histories and architecture of most, but not all, rift basins are elegantly explained by extension of ~120 km thick lithosphere followed by thermal re-thickening of the lithospheric mantle to its pre-rift thickness. Although this well-established model underpins most basin analysis, it is unclear whether the model explains the subsidence of rift basins developed over substantially thick lithosphere (as imaged by seismic tomography beneath substantial portions of the continents). The Canning Basin of Western Australia is an example where a rift basin putatively overlies lithosphere ≥180 km thick, imaged using shear wave tomography. Subsidence modelling in this study shows that the entire subsidence history of the account for the observed subsidence, at standard crustal densities, the lithospheric mantle is required to be depleted in density by 50-70 kg m-3, which is in line with estimates derived from modelling rare-earth element concentrations of the ~20 Ma lamproites and global isostatic considerations. Together, these results suggest that thick lithosphere thinned to > 120 km is thermally stable and is not accompanied by post-rift thermal subsidence driven by thermal re-thickening of the lithospheric mantle. Our results show that variations in lithospheric thickness place a fundamental control on basin architecture. The discrepancy between estimates of lithospheric thickness derived from subsidence data for the western Canning Basin and those derived from shear wave tomography suggests that the latter technique currently is limited in its ability to resolve lithospheric thickness variations at horizontal half-wavelength scales of <300 km.

Cenozoic North American Drainage Basin Evolution, Sediment Yield, and Accumulation in the Gulf of Mexico Basin

Science.gov (United States)

Galloway, W.; Ganey-Curry, P. E.

2010-12-01

The Cenozoic fill of the Gulf of Mexico basin contains a continuous record of sediment supply from the North American continental interior for the past 65 million years. Regional mapping of unit thickness and paleogeography for 18 depositional episodes defines patterns of shifting entry points of continental fluvial systems and quantifies the total volume of sediment supplied during each episode. Eight fluvio-deltaic depocenters, named for geographic similarities to entry points and drainage basins of modern rivers, are present. From southwest to northeast, they are the Rio Bravo, Rio Grande, Guadalupe, Colorado, Houston-Brazos, Red, Mississippi, and Tennessee axes. Sediment volume was calculated from hand-contoured unit thickness maps compiled from basin-wide well and seismic control. Using a GIS algorithm to sum volumes within polygons bounding interpreted North American river contribution, the total extant volume was then calculated. General compaction factors were used to convert modern volume to quantitative approximations of total grain volume. Grain volume rate of supply for each depositional episode was then calculated. Values vary by more than an order of magnitude. Supply rate has commonly varied by two-fold or more between successive depositional episodes. Sediment supply is a significant, independent variable in development of stratigraphic sequences within the Gulf basin. Paleogeographic maps of the continental interior for eleven Cenozoic time intervals display the evolving and complex interplay of intracontinental tectonism, climate change, and drainage basin evolution. Five tectono-climatic eras are differentiated: Paleocene late Laramide era; early to middle Eocene terminal Laramide era; middle Cenozoic (Late Eocene—Early Miocene) dry, volcanogenic era; middle Neogene (Middle—Late Miocene) arid, extensional era; and late Neogene (Plio—Pleistocene) monsoonal, epeirogenic uplift era. Sediment supply to the GOM reflects the interplay of (1

Hydrologic Sub-basins of Greenland, Version 1

Data.gov (United States)

National Aeronautics and Space Administration — The Hydrologic Sub-basins of Greenland data set contains Geographic Information System (GIS) polygon shapefiles that include 293 hydrologic sub-basins of the...

Hydrological Cycle in the Heihe River Basin and Its Implication for Water Resource Management in Endorheic Basins

Science.gov (United States)

Li, Xin; Cheng, Guodong; Ge, Yingchun; Li, Hongyi; Han, Feng; Hu, Xiaoli; Tian, Wei; Tian, Yong; Pan, Xiaoduo; Nian, Yanyun; Zhang, Yanlin; Ran, Youhua; Zheng, Yi; Gao, Bing; Yang, Dawen; Zheng, Chunmiao; Wang, Xusheng; Liu, Shaomin; Cai, Ximing

2018-01-01

Endorheic basins around the world are suffering from water and ecosystem crisis. To pursue sustainable development, quantifying the hydrological cycle is fundamentally important. However, knowledge gaps exist in how climate change and human activities influence the hydrological cycle in endorheic basins. We used an integrated ecohydrological model, in combination with systematic observations, to analyze the hydrological cycle in the Heihe River Basin, a typical endorheic basin in arid region of China. The water budget was closed for different landscapes, river channel sections, and irrigation districts of the basin from 2001 to 2012. The results showed that climate warming, which has led to greater precipitation, snowmelt, glacier melt, and runoff, is a favorable factor in alleviating water scarcity. Human activities, including ecological water diversion, cropland expansion, and groundwater overexploitation, have both positive and negative effects. The natural oasis ecosystem has been restored considerably, but the overuse of water in midstream and the use of environmental flow for agriculture in downstream have exacerbated the water stress, resulting in unfavorable changes in surface-ground water interactions and raising concerns regarding how to fairly allocate water resources. Our results suggest that the water resource management in the region should be adjusted to adapt to a changing hydrological cycle, cropland area must be reduced, and the abstraction of groundwater must be controlled. To foster long-term benefits, water conflicts should be handled from a broad socioeconomic perspective. The findings can provide useful information on endorheic basins to policy makers and stakeholders around the world.

"The evil virus cell": Students‘ knowledge and beliefs about viruses

Science.gov (United States)

Enzinger, Sonja M.; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

Recharge and Groundwater Flow Within an Intracratonic Basin, Midwestern United States.

Science.gov (United States)

Panno, Samuel V; Askari, Zohreh; Kelly, Walton R; Parris, Thomas M; Hackley, Keith C

2018-01-01

The conservative nature of chloride (Cl - ) in groundwater and the abundance of geochemical data from various sources (both published and unpublished) provided a means of developing, for the first time, a representation of the hydrogeology of the Illinois Basin on a basin-wide scale. The creation of Cl - isocons superimposed on plan view maps of selected formations and on cross sections across the Illinois Basin yielded a conceptual model on a basin-wide scale of recharge into, groundwater flow within and through the Illinois Basin. The maps and cross sections reveal the infiltration and movement of freshwater into the basin and dilution of brines within various geologic strata occurring at basin margins and along geologic structures. Cross-formational movement of brines is also seen in the northern part of the basin. The maps and cross sections also show barriers to groundwater movement created by aquitards resulting in areas of apparent isolation/stagnation of concentrated brines within the basin. The distribution of Cl - within the Illinois Basin suggests that the current chemical composition of groundwater and distribution of brines within the basin is dependent on five parameters: (1) presence of bedrock exposures along basin margins; (2) permeability of geologic strata and their distribution relative to one another; (3) presence or absence of major geologic structures; (4) intersection of major waterways with geologic structures, basin margins, and permeable bedrock exposures; and (5) isolation of brines within the basin due to aquitards, inhomogeneous permeability, and, in the case of the deepest part of the basin, brine density effects. © 2017, National Ground Water Association.

Influenza virus inactivated by artificial ribonucleases as a prospective killed virus vaccine.

Science.gov (United States)

Fedorova, Antonina A; Goncharova, Elena P; Kovpak, Mikhail P; Vlassov, Valentin V; Zenkova, Marina A

2012-04-19

The inactivation of viral particles with agents causing minimal damage to the structure of surface epitopes is a well-established approach for the production of killed virus vaccines. Here, we describe new agents for the inactivation of influenza virus, artificial ribonucleases (aRNases), which are chemical compounds capable of cleaving RNA molecules. Several aRNases were identified, exhibiting significant virucidal activity against the influenza A virus and causing a minimal effect on the affinity of monoclonal antibodies for the inactivated virus. Using a murine model of the influenza virus infection, a high protective activity of the aRNase-inactivated virus as a vaccine was demonstrated. The results of the experiments demonstrate the efficacy of novel chemical agents in the preparation of vaccines against influenza and, perhaps, against other infections caused by RNA viruses. Copyright © 2012 Elsevier Ltd. All rights reserved.

Geology and salt deposits of the Michigan Basin

International Nuclear Information System (INIS)

Johnson, K.S.; Gonzales, S.

1976-07-01

The Silurian-age Salina salt, one of the greatest deposits of bedded rock salt in the world, underlies most of the Michigan basin and parts of the Appalachian basin in Ohio. Pennsylvania, New York, and West Virginia. Interest in this salt deposit has increased in recent years because there may be one or more areas where it could be used safely as a repository for the underground storage of high-level radioactive wastes. The general geology of the Michigan basin is summarized and the major salt deposits are described in the hope that these data will be useful in determining whether there are any areas in the basin that are sufficiently promising to warrant further detailed study. Distribution of the important salt deposits in the basin is limited to the Southern Peninsula of Michigan

Basin scale management of surface and ground water

International Nuclear Information System (INIS)

Tracy, J.C.; Al-Sharif, M.

1993-01-01

An important element in the economic development of many regions of the Great Plains is the availability of a reliable water supply. Due to the highly variable nature of the climate through out much of the Great Plains region, non-controlled stream flow rates tend to be highly variable from year to year. Thus, the primary water supply has tended towards developing ground water aquifers. However, in regions where shallow ground water is extracted for use, there exists the potential for over drafting aquifers to the point of depleting hydraulically connected stream flows, which could adversely affect the water supply of downstream users. To prevent the potential conflict that can arise when a basin's water supply is being developed or to control the water extractions within a developed basin requires the ability to predict the effect that water extractions in one region will have on water extractions from either surface or ground water supplies else where in the basin. This requires the ability to simulate ground water levels and stream flows on a basin scale as affected by changes in water use, land use practices and climatic changes within the basin. The outline for such a basin scale surface water-ground water model has been presented in Tracy (1991) and Tracy and Koelliker (1992), and the outline for the mathematical programming statement to aid in determining the optimal allocation of water on a basin scale has been presented in Tracy and Al-Sharif (1992). This previous work has been combined into a computer based model with graphical output referred to as the LINOSA model and was developed as a decision support system for basin managers. This paper will present the application of the LINOSA surface-ground water management model to the Rattlesnake watershed basin that resides within Ground Water Management District Number 5 in south central Kansas

Geochemical Modeling Of F Area Seepage Basin Composition And Variability

International Nuclear Information System (INIS)

Millings, M.; Denham, M.; Looney, B.

2012-01-01

From the 1950s through 1989, the F Area Seepage Basins at the Savannah River Site (SRS) received low level radioactive wastes resulting from processing nuclear materials. Discharges of process wastes to the F Area Seepage Basins followed by subsequent mixing processes within the basins and eventual infiltration into the subsurface resulted in contamination of the underlying vadose zone and downgradient groundwater. For simulating contaminant behavior and subsurface transport, a quantitative understanding of the interrelated discharge-mixing-infiltration system along with the resulting chemistry of fluids entering the subsurface is needed. An example of this need emerged as the F Area Seepage Basins was selected as a key case study demonstration site for the Advanced Simulation Capability for Environmental Management (ASCEM) Program. This modeling evaluation explored the importance of the wide variability in bulk wastewater chemistry as it propagated through the basins. The results are intended to generally improve and refine the conceptualization of infiltration of chemical wastes from seepage basins receiving variable waste streams and to specifically support the ASCEM case study model for the F Area Seepage Basins. Specific goals of this work included: (1) develop a technically-based 'charge-balanced' nominal source term chemistry for water infiltrating into the subsurface during basin operations, (2) estimate the nature of short term and long term variability in infiltrating water to support scenario development for uncertainty quantification (i.e., UQ analysis), (3) identify key geochemical factors that control overall basin water chemistry and the projected variability/stability, and (4) link wastewater chemistry to the subsurface based on monitoring well data. Results from this study provide data and understanding that can be used in further modeling efforts of the F Area groundwater plume. As identified in this study, key geochemical factors affecting basin

[The great virus comeback].

Science.gov (United States)

Forterre, Patrick

2013-01-01

Viruses have been considered for a long time as by-products of biological evolution. This view is changing now as a result of several recent discoveries. Viral ecologists have shown that viral particles are the most abundant biological entities on our planet, whereas metagenomic analyses have revealed an unexpected abundance and diversity of viral genes in the biosphere. Comparative genomics have highlighted the uniqueness of viral sequences, in contradiction with the traditional view of viruses as pickpockets of cellular genes. On the contrary, cellular genomes, especially eukaryotic ones, turned out to be full of genes derived from viruses or related elements (plasmids, transposons, retroelements and so on). The discovery of unusual viruses infecting archaea has shown that the viral world is much more diverse than previously thought, ruining the traditional dichotomy between bacteriophages and viruses. Finally, the discovery of giant viruses has blurred the traditional image of viruses as small entities. Furthermore, essential clues on virus history have been obtained in the last ten years. In particular, structural analyses of capsid proteins have uncovered deeply rooted homologies between viruses infecting different cellular domains, suggesting that viruses originated before the last universal common ancestor (LUCA). These studies have shown that several lineages of viruses originated independently, i.e., viruses are polyphyletic. From the time of LUCA, viruses have coevolved with their hosts, and viral lineages can be viewed as lianas wrapping around the trunk, branches and leaves of the tree of life. Although viruses are very diverse, with genomes encoding from one to more than one thousand proteins, they can all be simply defined as organisms producing virions. Virions themselves can be defined as infectious particles made of at least one protein associated with the viral nucleic acid, endowed with the capability to protect the viral genome and ensure its

Epidemiology of viruses causing chronic hepatitis among populations from the Amazon Basin and related ecosystems Epidemiología de las hepatitis crónicas con carácter vírico en las comunidades indígenas de la cuenca amazónica y de otros ecosistemas similares

Directory of Open Access Journals (Sweden)

José M. Echevarría

2003-12-01

Full Text Available On the last twenty years, viral hepatitis has emerged as a serious problem in almost all the Amerindian communities studied in the Amazon Basin and in other Amazon-related ecological systems from the North and Center of South America. Studies performed on communities from Bolivia, Brazil, Colombia, Peru and Venezuela have shown a high endemicity of the hepatitis B virus (HBV infection all over the region, which is frequently associated to a high prevalence of infection by hepatitis D virus among the chronic HBV carriers. Circulation of both agents responds mainly to horizontal virus transmission during childhood through mechanisms that are not fully understood. By contrast, infection by hepatitis C virus (HCV, which is present in all the urban areas of South America, is still very uncommon among them. At the moment, there is not data enough to evaluate properly the true incidence that such endemicity may have on the health of the populations affected. Since viral transmission might be operated by mechanisms that could not be acting in other areas of the World, it seems essential to investigate such mechanisms and to prevent the introduction of HCV into these populations, which consequences for health could be very serious.A lo largo de los últimos veinte años, las hepatitis víricas se han revelado como un importante problema para las comunidades indígenas de la cuenca amazónica y de otros ecosistemas similares del norte y centro de Sudamérica. Los estudios realizados en comunidades de Bolivia, Brasil, Colombia, Perú y Venezuela han demostrado una alta propensión endémica para la infección por el virus de la hepatitis B, que se asocia con frecuencia a una elevada prevalencia de coinfección con el virus de la hepatitis D entre los portadores crónicos. La circulación de ambos agentes responde a su transmisión horizontal durante la infancia, a través de mecanismos aún poco conocidos. Por el contrario, la infección por el virus de la

Quaternary base-level drops and trigger mechanisms in a closed basin: Geomorphic and sedimentological studies of the Gastre Basin, Argentina

Science.gov (United States)

Bilmes, Andrés; Veiga, Gonzalo D.; Ariztegui, Daniel; Castelltort, Sébastien; D'Elia, Leandro; Franzese, Juan R.

2017-04-01

Evaluating the role of tectonics and climate as possible triggering mechanisms of landscape reconfigurations is essential for paleoenvironmental and paleoclimatic reconstructions. In this study an exceptional receptive closed Quaternary system of Patagonia (the Gastre Basin) is described, and examined in order to analyze factors triggering base-level drops. Based on a geomorphological approach, which includes new tectonic geomorphology investigations combined with sedimentological and stratigraphic analysis, three large-scale geomorphological systems were identified, described and linked to two major lake-level highstands preserved in the basin. The results indicate magnitudes of base-level drops that are several orders of magnitude greater than present-day water-level fluctuations, suggesting a triggering mechanism not observed in recent times. Direct observations indicating the occurrence of Quaternary faults were not recorded in the region. In addition, morphometric analyses that included mountain front sinuosity, valley width-height ratio, and fan apex position dismiss tectonic fault activity in the Gastre Basin during the middle Pleistocene-Holocene. Therefore, we suggest here that upper Pleistocene climate changes may have been the main triggering mechanism of base-level falls in the Gastre Basin as it is observed in other closed basins of central Patagonia (i.e., Carri Laufquen Basin).

Protoplasts and plant viruses

International Nuclear Information System (INIS)

Murakishi, H.; Lesney, M.S.; Carlson, P.

1984-01-01

The use of protoplasts in the study of plant viruses has attracted considerable attention since its inception in the late 1960s. This article is an attempt to assess the current status of protoplasts (primarily) and all cell cultures (in some instances) in studies of virus infection, virus replication, cytopathology, cross-protection, virus resistance, and the use of in vitro methods and genetic engineering to recover virus-resistant plants. These areas of study proved difficult to do entirely with whole plants or plant parts. However, because protoplasts could be synchronously infected with virus, they provided a valuable alternative means of following biochemical and cytological events in relation to the virus growth cycle in a more precise manner than previously possible

Hepatitis A Virus and Hepatitis E Virus: Emerging and Re-Emerging Enterically Transmitted Hepatitis Viruses.

Science.gov (United States)

Lemon, Stanley M; Walker, Christopher M

2018-05-07

Over the past two decades, progress in understanding human infections with hepatitis A virus (HAV) and hepatitis E virus (HEV) has been eclipsed by the priority of combating persistent hepatitis B virus (HBV) and hepatitis C virus (HCV) infections. During that time, the global burden of liver disease caused by enteric hepatitis viruses has not abated. Because of vaccines, hepatitis A has become increasingly a disease of adults instead of early childhood in many regions of the world, resulting in an age-related shift toward more severe disease. HEV has remained endemic in many developing countries, and in well-developed, economically advanced countries it is now recognized as a cause of chronic, progressive liver disease in individuals with compromised immunity. The goal of this collection of articles is to review recent progress and to shine a bright light on gaps in our understanding of how these viruses replicate, cause disease, interact with the liver and host immune system, and are transmitted, along with prospects for improved control in human populations. Renewed efforts to study and compare HAV and HEV biology in humans and animal models have high potential to enhance our understanding of host-pathogen balance in the liver, and may contribute ultimately to the control of other infectious diseases of the liver. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

Evolutionary ecology of virus emergence.

Science.gov (United States)

Dennehy, John J

2017-02-01

The cross-species transmission of viruses into new host populations, termed virus emergence, is a significant issue in public health, agriculture, wildlife management, and related fields. Virus emergence requires overlap between host populations, alterations in virus genetics to permit infection of new hosts, and adaptation to novel hosts such that between-host transmission is sustainable, all of which are the purview of the fields of ecology and evolution. A firm understanding of the ecology of viruses and how they evolve is required for understanding how and why viruses emerge. In this paper, I address the evolutionary mechanisms of virus emergence and how they relate to virus ecology. I argue that, while virus acquisition of the ability to infect new hosts is not difficult, limited evolutionary trajectories to sustained virus between-host transmission and the combined effects of mutational meltdown, bottlenecking, demographic stochasticity, density dependence, and genetic erosion in ecological sinks limit most emergence events to dead-end spillover infections. Despite the relative rarity of pandemic emerging viruses, the potential of viruses to search evolutionary space and find means to spread epidemically and the consequences of pandemic viruses that do emerge necessitate sustained attention to virus research, surveillance, prophylaxis, and treatment. © 2016 New York Academy of Sciences.

sedimentology, depositional environments and basin evolution

African Journals Online (AJOL)

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ABSTRACT: The Inter-Trappean coal and oil shale-bearing sedimentation in the Delbi-Moye Basin took place in tectonically controlled grabens and half-grabens formed by extensional fault systems and accompanied by passive subsidence. The sedimentation history of the basin is related to the tectonic events that affected ...

A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.

Science.gov (United States)

Rensen, Elena Ilka; Mochizuki, Tomohiro; Quemin, Emmanuelle; Schouten, Stefan; Krupovic, Mart; Prangishvili, David

2016-03-01

Viruses package their genetic material in diverse ways. Most known strategies include encapsulation of nucleic acids into spherical or filamentous virions with icosahedral or helical symmetry, respectively. Filamentous viruses with dsDNA genomes are currently associated exclusively with Archaea. Here, we describe a filamentous hyperthermophilic archaeal virus, Pyrobaculum filamentous virus 1 (PFV1), with a type of virion organization not previously observed in DNA viruses. The PFV1 virion, 400 ± 20 × 32 ± 3 nm, contains an envelope and an inner core consisting of two structural units: a rod-shaped helical nucleocapsid formed of two 14-kDa major virion proteins and a nucleocapsid-encompassing protein sheath composed of a single major virion protein of 18 kDa. The virion organization of PFV1 is superficially similar to that of negative-sense RNA viruses of the family Filoviridae, including Ebola virus and Marburg virus. The linear dsDNA of PFV1 carries 17,714 bp, including 60-bp-long terminal inverted repeats, and contains 39 predicted ORFs, most of which do not show similarities to sequences in public databases. PFV1 is a lytic virus that completely disrupts the host cell membrane at the end of the infection cycle.

DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

OpenAIRE

Július Rozák; Zdenka Gálová

2013-01-01

The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen a...

Observed changes in extremes of daily rainfall and temperature in Jemma Sub-Basin, Upper Blue Nile Basin, Ethiopia

Science.gov (United States)

Worku, Gebrekidan; Teferi, Ermias; Bantider, Amare; Dile, Yihun T.

2018-02-01

Climate variability has been a threat to the socio-economic development of Ethiopia. This paper examined the changes in rainfall, minimum, and maximum temperature extremes of Jemma Sub-Basin of the Upper Blue Nile Basin for the period of 1981 to 2014. The nonparametric Mann-Kendall, seasonal Mann-Kendall, and Sen's slope estimator were used to estimate annual trends. Ten rainfall and 12 temperature indices were used to study changes in rainfall and temperature extremes. The results showed an increasing trend of annual and summer rainfall in more than 78% of the stations and a decreasing trend of spring rainfall in most of the stations. An increase in rainfall extreme events was detected in the majority of the stations. Several rainfall extreme indices showed wetting trends in the sub-basin, whereas limited indices indicated dryness in most of the stations. Annual maximum and minimum temperature and extreme temperature indices showed warming trend in the sub-basin. Presence of extreme rainfall and a warming trend of extreme temperature indices may suggest signs of climate change in the Jemma Sub-Basin. This study, therefore, recommended the need for exploring climate induced risks and implementing appropriate climate change adaptation and mitigation strategies.

Corrosion of aluminum alloys in a reactor disassembly basin

International Nuclear Information System (INIS)

Howell, J.P.; Zapp, P.E.; Nelson, D.Z.

1992-01-01

This document discusses storage of aluminum clad fuel and target tubes of the Mark 22 assembly takes place in the concrete-lined, light-water-filled, disassembly basins located within each reactor area at the Savannah River Site (SRS). A corrosion test program has been conducted in the K-Reactor disassembly basin to assess the storage performance of the assemblies and other aluminum clad components in the current basin environment. Aluminum clad alloys cut from the ends of actual fuel and target tubes were originally placed in the disassembly water basin in December 1991. After time intervals varying from 45--182 days, the components were removed from the basin, photographed, and evaluated metallographically for corrosion performance. Results indicated that pitting of the 8001 aluminum fuel clad alloy exceeded the 30-mil (0.076 cm) cladding thickness within the 45-day exposure period. Pitting of the 1100 aluminum target clad alloy exceeded the 30-mil (0.076 cm) clad thickness in 107--182 days exposure. The existing basin water chemistry is within limits established during early site operations. Impurities such as Cl - , NO 3 - and SO 4 - are controlled to the parts per million level and basin water conductivity is currently 170--190 μmho/cm. The test program has demonstrated that the basin water is aggressive to the aluminum components at these levels. Other storage basins at SRS and around the US have successfully stored aluminum components for greater than ten years without pitting corrosion. These basins have impurity levels controlled to the parts per billion level (1000X lower) and conductivity less than 1.0 μmho/cm

K basins sludge removal sludge pretreatment system

International Nuclear Information System (INIS)

Chang, H.L.

1997-01-01

The Spent Nuclear Fuels Program is in the process of planning activities to remove spent nuclear fuel and other materials from the 100-K Basins as a remediation effort for clean closure. The 105 K- East and K-West Basins store spent fuel, sludge, and debris. Sludge has accumulated in the 1 00 K Basins as a result of fuel oxidation and a slight amount of general debris being deposited, by settling, in the basin water. The ultimate intent in removing the sludge and fuel is to eliminate the environmental risk posed by storing fuel at the K Basins. The task for this project is to disposition specific constituents of sludge (metallic fuel) to produce a product stream through a pretreatment process that will meet the requirements, including a final particle size acceptable to the Tank Waste Remediation System (TWRS). The purpose of this task is to develop a preconceptual design package for the K Basin sludge pretreatment system. The process equipment/system is at a preconceptual stage, as shown in sketch ES-SNF-01 , while a more refined process system and material/energy balances are ongoing (all sketches are shown in Appendix C). Thus, the overall process and 0535 associated equipment have been conservatively selected and sized, respectively, to establish the cost basis and equipment layout as shown in sketches ES- SNF-02 through 08

Analysis of Ignition Testing on K-West Basin Fuel

Energy Technology Data Exchange (ETDEWEB)

J. Abrefah; F.H. Huang; W.M. Gerry; W.J. Gray; S.C. Marschman; T.A. Thornton

1999-08-10

Approximately 2100 metric tons of spent nuclear fuel (SNF) discharged from the N-Reactor have been stored underwater at the K-Basins in the 100 Area of the Hanford Site. The spent fuel has been stored in the K-East Basin since 1975 and in the K-West Basin since 1981. Some of the SNF elements in these basins have corroded because of various breaches in the Zircaloy cladding that occurred during fuel discharge operations and/or subsequent handling and storage in the basins. Consequently, radioactive material in the fuel has been released into the basin water, and water has leaked from the K-East Basin into the soil below. To protect the Columbia River, which is only 380 m from the basins, the SNF is scheduled to be removed and transported for interim dry storage in the 200 East Area, in the central portion of the Site. However, before being shipped, the corroded fuel elements will be loaded into Multi-Canister OverPacks and conditioned. The conditioning process will be selected based on the Integrated Process Strategy (IPS) (WHC 1995), which was prepared on the basis of the dry storage concept developed by the Independent Technical Assessment (ITA) team (ITA 1994).

Analysis of Ignition Testing on K-West Basin Fuel

International Nuclear Information System (INIS)

Abrefah, J.; Huang, F.H.; Gerry, W.M.; Gray, W.J.; Marschman, S.C.; Thornton, T.A.

1999-01-01

Approximately 2100 metric tons of spent nuclear fuel (SNF) discharged from the N-Reactor have been stored underwater at the K-Basins in the 100 Area of the Hanford Site. The spent fuel has been stored in the K-East Basin since 1975 and in the K-West Basin since 1981. Some of the SNF elements in these basins have corroded because of various breaches in the Zircaloy cladding that occurred during fuel discharge operations and/or subsequent handling and storage in the basins. Consequently, radioactive material in the fuel has been released into the basin water, and water has leaked from the K-East Basin into the soil below. To protect the Columbia River, which is only 380 m from the basins, the SNF is scheduled to be removed and transported for interim dry storage in the 200 East Area, in the central portion of the Site. However, before being shipped, the corroded fuel elements will be loaded into Multi-Canister OverPacks and conditioned. The conditioning process will be selected based on the Integrated Process Strategy (IPS) (WHC 1995), which was prepared on the basis of the dry storage concept developed by the Independent Technical Assessment (ITA) team (ITA 1994)

Oil and gas in the Ogaden Basin, Ethiopia

Energy Technology Data Exchange (ETDEWEB)

Du Toit, S.R.; Kurdy, S. [Alconsult International, Calgary, AB (Canada); Asfaw, S.H.; Gessesse, A.A. [Petroleum Operations Dept., Ministry of Mines and Energy, Addis Ababa (Ethiopia)

1997-09-01

To date, many of the 47 exploration and development wells drilled in the Ogaden Basin in Ethiopia have exhibited natural oil seeps and oil and gas shows. The Calub gas field and the Hilala oil field occurs in the central part of the 350,000 sq. km. basin. The various units within the basin consist of continental sediments, a regional organic-rich interval close to the Permo-Triassic boundary, organic-rich marine sediments and carbonates. The Ogaden Basin is dissected by several faults that are related to the Ethiopian Rift and may form a component of traps in the Calub-Hilala area.

Watershed Planning Basins

Data.gov (United States)

Vermont Center for Geographic Information — The Watershed Planning Basin layer is part of a larger dataset contains administrative boundaries for Vermont's Agency of Natural Resources. The dataset includes...

Tecovirimat, a p37 envelope protein inhibitor for the treatment of smallpox infection.

Science.gov (United States)

Duraffour, Sophie; Andrei, Graciela; Snoeck, Robert

2010-03-01

Since the eradication of naturally occurring smallpox in 1980, the fear that variola virus could be used as a biological weapon has become real. Over the last 10 years, emergency preparedness programs have been launched to protect populations against a smallpox outbreak or the possible emergence in humans of other orthopoxvirus infections, such as monkeypox. Vaccination against smallpox was responsible for its eradication, but was linked with high rates of adverse events and contraindications. In this context, intensive research in the poxvirus field has led to the development of safer vaccines and to an increase in the number of anti-poxvirus agents in the pipeline. SIGA Technologies Inc, under license from ViroPharma Inc, is developing tecovirimat (ST-246). Tecovirimat is a novel antiviral that inhibits the egress of orthopoxviruses by targeting viral p37 protein orthologs. The development of tecovirimat during the last 5 years for the treatment of smallpox and for its potential use as adjunct to smallpox vaccine is reviewed here.

Functional properties of Virus-Encoded and Virus-Regulated 7TM Receptors

DEFF Research Database (Denmark)

Spiess, Katja; Rosenkilde, Mette Marie

2014-01-01

During co-evolution with their hosts, viruses have developed several survival strategies that involve exploitation of 7TM receptors. These include virus-encoded 7TM receptors and ligands and viral regulation of endogenous receptors. Many functional properties have been ascribed to virus-exploited...

Basin-wide water accounting using remote sensing data: the case of transboundary Indus Basin

Science.gov (United States)

Karimi, P.; Bastiaanssen, W. G. M.; Molden, D.; Cheema, M. J. M.

2012-11-01

The paper describes the application of a new Water Accounting Plus (WA+) framework to produce spatial information on water flows, sinks, uses, storages and assets, in the Indus Basin, South Asia. It demonstrates how satellite-derived estimates of land use, land cover, rainfall, evaporation (E), transpiration (T), interception (I) and biomass production can be used in the context of WA+. The results for one selected year showed that total annual water depletion in the basin (502 km3) plus outflows (21 km3) exceeded total precipitation (482 km3). The deficit in supply was augmented through abstractions beyond actual capacity, mainly from groundwater storage (30 km3). The "landscape ET" (depletion directly from rainfall) was 344 km3 (69% of total consumption). "Blue water" depletion ("utilized flow") was 158 km3 (31%). Agriculture was the biggest water consumer and accounted for 59% of the total depletion (297 km3), of which 85% (254 km3) was through irrigated agriculture and the remaining 15% (44 km3) through rainfed systems. While the estimated basin irrigation efficiency was 0.84, due to excessive evaporative losses in agricultural areas, half of all water consumption in the basin was non-beneficial. Average rainfed crop yields were 0.9 t ha-1 and 7.8 t ha-1 for two irrigated crop growing seasons combined. Water productivity was low due to a lack of proper agronomical practices and poor farm water management. The paper concludes that the opportunity for a food-secured and sustainable future for the Indus Basin lies in focusing on reducing soil evaporation. Results of future scenario analyses suggest that by implementing techniques to convert soil evaporation to crop transpiration will not only increase production but can also result in significant water savings that would ease the pressure on the fast declining storage.

Nutrient transport and transformation beneath an infiltration basin

Science.gov (United States)

Sumner, D.M.; Rolston, D.E.; Bradner, L.A.

1998-01-01

Field experiments were conducted to examine nutrient transport and transformation beneath an infiltration basin used for the disposal of treated wastewater. Removal of nitrogen from infiltrating water by denitrification was negligible beneath the basin, probably because of subsurface aeration as a result of daily interruptions in basin loading. Retention of organic nitrogen in the upper 4.6 m of the unsaturated zone (water table depth of approximately 11 m) during basin loading resulted in concentrations of nitrate as much as 10 times that of the applied treated wastewater, following basin 'rest' periods of several weeks, which allowed time for mineralization and nitrification. Approximately 90% of the phosphorus in treated wastewater was removed within the upper 4.6 m of the subsurface, primarily by adsorption reactions, with abundant iron and aluminum oxyhydroxides occurring as soil coatings. A reduction in the flow rate of infiltrating water arriving at the water table may explain the accumulation of relatively coarse (>0.45 ??m), organic forms of nitrogen and phosphorus slightly below the water table. Mineralization and nitrification reactions at this second location of organic nitrogen accumulation contributed to concentrations of nitrate as much as three times that of the applied treated wastewater. Phosphorus, which accumulated below the water table, was immobilized by adsorption or precipitation reactions during basin rest periods.Field experiments were conducted to examine nutrient transport and transformation beneath an infiltration basin used for the disposal of treated wastewater. Removal of nitrogen from infiltrating water by denitrification was negligible beneath the basin, probably because of subsurface aeration as a result of daily interruptions in basin loading. Retention of organic nitrogen in the upper 4.6 m of the unsaturated zone (water table depth of approximately 11 m) during basin loading resulted in concentrations of nitrate as much as 10

Electron microscopic identification of Zinga virus as a strain of Rift Valley fever virus.

Science.gov (United States)

Olaleye, O D; Baigent, C L; Mueller, G; Tomori, O; Schmitz, H

1992-01-01

Electron microscopic examination of a negatively stained suspension of Zinga virus showed particles 90-100 nm in diameter, enveloped with spikes 12-20 nm in length and 5 nm in diameter. Further identification of the virus by immune electron microscopy showed the reactivity of human Rift Valley fever virus-positive serum with Zinga virus. Results of this study are in agreement with earlier reports that Zinga virus is a strain of Rift Valley fever virus.

Northern part, Ten Mile and Taunton River basins

Science.gov (United States)

Williams, John R.; Willey, Richard E.

1967-01-01

The northern part of the Ten Mile and Taunton River basins is an area of about 195 square miles within Norfolk, Plymouth, and Bristol Counties in southeastern Massachusetts. The northern boundary of the area (plate 1) is the drainage divide separating these basins from that of the Charles, Neponset, and Weymouth River basins. The western boundary is, for the most part, the divide separating the basins from the Blackstone River basin. The eastern boundary is at the edge of the Brockton-Pembroke area (Petersen, 1962; Petersen and Shaw, 1961). The southern boundary in Seekonk is the northern limit of the East Providence quadrangle, for which a ground-water map was prepared by Allen and Gorman (1959); eastward, the southern boundaries of the city of Attleboro and the towns of Norton, Easton, and West Bridgewater form the southern boundary of the area.

Colorado River basin sensitivity to disturbance impacts

Science.gov (United States)

Bennett, K. E.; Urrego-Blanco, J. R.; Jonko, A. K.; Vano, J. A.; Newman, A. J.; Bohn, T. J.; Middleton, R. S.

2017-12-01

The Colorado River basin is an important river for the food-energy-water nexus in the United States and is projected to change under future scenarios of increased CO2emissions and warming. Streamflow estimates to consider climate impacts occurring as a result of this warming are often provided using modeling tools which rely on uncertain inputs—to fully understand impacts on streamflow sensitivity analysis can help determine how models respond under changing disturbances such as climate and vegetation. In this study, we conduct a global sensitivity analysis with a space-filling Latin Hypercube sampling of the model parameter space and statistical emulation of the Variable Infiltration Capacity (VIC) hydrologic model to relate changes in runoff, evapotranspiration, snow water equivalent and soil moisture to model parameters in VIC. Additionally, we examine sensitivities of basin-wide model simulations using an approach that incorporates changes in temperature, precipitation and vegetation to consider impact responses for snow-dominated headwater catchments, low elevation arid basins, and for the upper and lower river basins. We find that for the Colorado River basin, snow-dominated regions are more sensitive to uncertainties. New parameter sensitivities identified include runoff/evapotranspiration sensitivity to albedo, while changes in snow water equivalent are sensitive to canopy fraction and Leaf Area Index (LAI). Basin-wide streamflow sensitivities to precipitation, temperature and vegetation are variable seasonally and also between sub-basins; with the largest sensitivities for smaller, snow-driven headwater systems where forests are dense. For a major headwater basin, a 1ºC of warming equaled a 30% loss of forest cover, while a 10% precipitation loss equaled a 90% forest cover decline. Scenarios utilizing multiple disturbances led to unexpected results where changes could either magnify or diminish extremes, such as low and peak flows and streamflow timing

Development of a novel method for simultaneous concentration of viruses and protozoa from a single water sample.

Science.gov (United States)

Haramoto, Eiji; Katayama, Hiroyuki; Asami, Mari; Akiba, Michihiro

2012-06-01

A novel method, electronegative membrane-vortex (EMV) method, was developed for simultaneous concentration of viruses and protozoa from a single water sample. Viruses and protozoa in a water sample were mixed with a cation solution and adsorbed on an electronegative membrane. Concentrated virus and protozoa samples were obtained as supernatant and pellet fractions, respectively, by vigorous vortex mixing of the membrane and centrifugation of the eluted material. The highest recovery efficiencies of model microbes from river water and tap water by this EMV method were obtained using a mixed cellulose ester membrane with a pore size of 0.45 μm (Millipore) as the electronegative membrane and MgCl(2) as the cation solution. The recovery was 27.7-86.5% for poliovirus, 25.7-68.3% for coliphage Qβ, 28.0-60.0% for Cryptosporidium oocysts, and 35.0-53.0% for Giardia cysts. The EMV method detected successfully indigenous viruses and protozoa in wastewater and river water samples from the Kofu basin, Japan, showing an overall positive rate of 100% (43/43) for human adenovirus, 79% (34/43) for norovirus GI, 65% (28/43) for norovirus GII, 23% (10/43) for Cryptosporidium oocysts, and 60% (26/43) for Giardia cysts. By direct DNA sequencing, a total of four genotypes (AI, AII, B, and G) of Giardia intestinalis were identified in the water samples, indicating that the river water was contaminated with feces from various mammals, including humans. Copyright © 2012 Elsevier B.V. All rights reserved.

Nonhuman Primate Models of Hepatitis A Virus and Hepatitis E Virus Infections.

Science.gov (United States)

Lanford, Robert E; Walker, Christopher M; Lemon, Stanley M

2018-04-23

Although phylogenetically unrelated, human hepatitis viruses share an exclusive or near exclusive tropism for replication in differentiated hepatocytes. This narrow tissue tropism may contribute to the restriction of the host ranges of these viruses to relatively few host species, mostly nonhuman primates. Nonhuman primate models thus figure prominently in our current understanding of the replication and pathogenesis of these viruses, including the enterically transmitted hepatitis A virus (HAV) and hepatitis E virus (HEV), and have also played major roles in vaccine development. This review draws comparisons of HAV and HEV infection from studies conducted in nonhuman primates, and describes how such studies have contributed to our current understanding of the biology of these viruses. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

BASIN-CENTERED GAS SYSTEMS OF THE U.S.

Energy Technology Data Exchange (ETDEWEB)

Marin A. Popov; Vito F. Nuccio; Thaddeus S. Dyman; Timothy A. Gognat; Ronald C. Johnson; James W. Schmoker; Michael S. Wilson; Charles Bartberger

2000-11-01

The USGS is re-evaluating the resource potential of basin-centered gas accumulations in the U.S. because of changing perceptions of the geology of these accumulations, and the availability of new data since the USGS 1995 National Assessment of United States oil and gas resources (Gautier et al., 1996). To attain these objectives, this project used knowledge of basin-centered gas systems and procedures such as stratigraphic analysis, organic geochemistry, modeling of basin thermal dynamics, reservoir characterization, and pressure analysis. This project proceeded in two phases which had the following objectives: Phase I (4/1998 through 5/1999): Identify and describe the geologic and geographic distribution of potential basin-centered gas systems, and Phase II (6/1999 through 11/2000): For selected systems, estimate the location of those basin-centered gas resources that are likely to be produced over the next 30 years. In Phase I, we characterize thirty-three (33) potential basin-centered gas systems (or accumulations) based on information published in the literature or acquired from internal computerized well and reservoir data files. These newly defined potential accumulations vary from low to high risk and may or may not survive the rigorous geologic scrutiny leading towards full assessment by the USGS. For logistical reasons, not all basins received the level of detail desired or required.

Radioactive air emissions notice of construction for the 105N Basin Stabilization

International Nuclear Information System (INIS)

Coenenberg, E.T.

1994-01-01

The 105N Basin (basin) Stabilization will place the basin in a radiologically and environmentally safe condition so that it can be decommissioned at a later date. The basin is in the 105N Building, which is located in the 100N Area. The 100N Area is located in the Northern portion of the Hanford Site approximately 35 miles northwest of the city of Richland, Washington. The basin stabilization objectives are to inspect for Special Nuclear Material (SNM) (i.e., fuel assemblies and fuel pieces), remove the water from the basin and associated pits, and stabilize the basin surface. The stabilization will involve removal of basin hardware, removal of basin sediments, draining of basin water, and cleaning and stabilizing basin surfaces to prevent resuspension of radioactive emissions to the air. These activities will be conducted in accordance with all applicable regulations

Zika Virus

Science.gov (United States)

... Funding CDC Activities For Healthcare Providers Clinical Evaluation & Disease Sexual Transmission HIV Infection & Zika Virus Testing for Zika Test Specimens – At Time of Birth Diagnostic Tests Understanding Zika Virus Test Results ...

Hepatitis C virus infection in the human immunodeficiency virus infected patient

DEFF Research Database (Denmark)

Clausen, Louise Nygaard; Lundbo, Lene Fogt; Benfield, Thomas

2014-01-01

Human immunodeficiency virus (HIV) and hepatitis C virus (HCV) share the same transmission routes; therefore, coinfection is frequent. An estimated 5-10 million individuals alone in the western world are infected with both viruses. The majority of people acquire HCV by injection drug use and...

Corrosion in ICPP fuel storage basins

International Nuclear Information System (INIS)

Dirk, W.J.

1993-09-01

The Idaho Chemical Processing Plant currently stores irradiated nuclear fuel in fuel storage basins. Historically, fuel has been stored for over 30 years. During the 1970's, an algae problem occurred which required higher levels of chemical treatment of the basin water to maintain visibility for fuel storage operations. This treatment led to higher levels of chlorides than seen previously which cause increased corrosion of aluminum and carbon steel, but has had little effect on the stainless steel in the basin. Corrosion measurements of select aluminum fuel storage cans, aluminum fuel storage buckets, and operational support equipment have been completed. Aluminum has exhibited good general corrosion rates, but has shown accelerated preferential attack in the form of pitting. Hot dipped zinc coated carbon steel, which has been in the basin for approximately 40 years, has shown a general corrosion rate of 4 mpy, and there is evidence of large shallow pits on the surface. A welded Type 304 stainless steel corrosion coupon has shown no attack after 13 years exposure. Galvanic couples between carbon steel welded to Type 304 stainless steel occur in fuel storage yokes exposed to the basin water. These welded couples have shown galvanic attack as well as hot weld cracking and intergranular cracking. The intergranular stress corrosion cracking is attributed to crevices formed during fabrication which allowed chlorides to concentrate

Immunological responses against human papilloma virus and human papilloma virus induced laryngeal cancer.

Science.gov (United States)

Chitose, Shun-ichi; Sakazaki, T; Ono, T; Kurita, T; Mihashi, H; Nakashima, T

2010-06-01

This study aimed to clarify the local immune status in the larynx in the presence of infection or carcinogenesis associated with human papilloma virus. Cytological samples (for human papilloma virus detection) and laryngeal secretions (for immunoglobulin assessment) were obtained from 31 patients with laryngeal disease, during microscopic laryngeal surgery. On histological examination, 12 patients had squamous cell carcinoma, four had laryngeal papilloma and 15 had other benign laryngeal disease. Cytological samples were tested for human papilloma virus DNA using the Hybrid Capture 2 assay. High risk human papilloma virus DNA was detected in 25 per cent of patients (three of 12) with laryngeal cancer. Low risk human papilloma virus DNA was detected only in three laryngeal papilloma patients. The mean laryngeal secretion concentrations of immunoglobulins M, G and A and secretory immunoglobulin A in human papilloma virus DNA positive patients were more than twice those in human papilloma virus DNA negative patients. A statistically significant difference was observed between the secretory immunoglobulin A concentrations in the two groups. Patients with laryngeal cancer had higher laryngeal secretion concentrations of each immunoglobulin type, compared with patients with benign laryngeal disease. The study assessed the mean laryngeal secretion concentrations of each immunoglobulin type in the 12 laryngeal cancer patients, comparing human papilloma virus DNA positive patients (n = 3) and human papilloma virus DNA negative patients (n = 9); the mean concentrations of immunoglobulins M, G and A and secretory immunoglobulin A tended to be greater in human papilloma virus DNA positive cancer patients, compared with human papilloma virus DNA negative cancer patients. These results suggest that the local laryngeal immune response is activated by infection or carcinogenesis due to human papilloma virus. The findings strongly suggest that secretory IgA has inhibitory activity

Basin-Scale Opportunity Assessment Initiative Background Literature Review

Energy Technology Data Exchange (ETDEWEB)

Saulsbury, Bo [ORNL; Geerlofs, Simon H. [Pacific Northwest National Laboratory (PNNL); Cada, Glenn F [ORNL; Bevelhimer, Mark S [ORNL

2010-10-01

As called for in the March 24, 2010, Memorandum of Understanding (MOU) for Hydropower, the U.S. Department of Energy (DOE), the U.S. Department of the Interior (DOI), the U.S. Army Corps of Engineers (USACE), environmental stakeholders, and the hydropower industry are collaborating to identify opportunities to simultaneously increase electricity generation and improve environmental services in river basins of the United States. New analytical tools provide an improved ability to understand, model, and visualize environmental and hydropower systems. Efficiencies and opportunities that might not be apparent in site-by-site analyses can be revealed through assessments at the river-basin scale. Information from basin-scale assessments could lead to better coordination of existing hydropower projects, or to inform siting decisions (e.g., balancing the removal of some dams with the construction of others), in order to meet renewable energy production and environmental goals. Basin-scale opportunity assessments would inform energy and environmental planning and address the cumulative effects of hydropower development and operations on river basin environmental quality in a way that quantifies energy-environment tradeoffs. Opportunity assessments would create information products, develop scenarios, and identify specific actions that agencies, developers, and stakeholders can take to locate new sustainable hydropower projects, increase the efficiency and environmental performance of existing projects, and restore and protect environmental quality in our nation's river basins. Government agencies and non-governmental organizations (NGO) have done significant work to understand and assess opportunities for both hydropower and environmental protection at the basin scale. Some initiatives have been successful, others less so, and there is a need to better understand the legacy of work on which this current project can build. This background literature review is intended

Assessing Vulnerability under Uncertainty in the Colorado River Basin: The Colorado River Basin Water Supply and Demand Study

Science.gov (United States)

Jerla, C.; Adams, P.; Butler, A.; Nowak, K.; Prairie, J. R.

2013-12-01

Spanning parts of the seven states, of Arizona, California, Colorado, New Mexico, Nevada, Utah, and Wyoming, the Colorado River is one of the most critical sources of water in the western United States. Colorado River allocations exceed the long-term supply and since the 1950s, there have been a number of years when the annual water use in the Colorado River Basin exceeded the yield. The Basin is entering its second decade of drought conditions which brings challenges that will only be compounded if projections of climate change are realized. It was against this backdrop that the Colorado River Basin Water Supply and Demand Study was conducted. The Study's objectives are to define current and future imbalances in the Basin over the next 50 years and to develop and analyze adaptation and mitigation strategies to resolve those imbalances. Long-term planning in the Basin involves the integration of uncertainty with respect to a changing climate and other uncertainties such as future demand and how policies may be modified to adapt to changing reliability. The Study adopted a scenario planning approach to address this uncertainty in which thousands of scenarios were developed to encompass a wide range of plausible future water supply and demand conditions. Using Reclamation's long-term planning model, the Colorado River Simulation System, the reliability of the system to meet Basin resource needs under these future conditions was projected both with and without additional future adaptation strategies in place. System reliability metrics were developed in order to define system vulnerabilities, the conditions that lead to those vulnerabilities, and sign posts to indicate if the system is approaching a vulnerable state. Options and strategies that reduce these vulnerabilities and improve system reliability were explored through the development of portfolios. Four portfolios, each with different management strategies, were analyzed to assess their effectiveness at

Hydrogeology and water quality of the Chakari Basin, Afghanistan

Science.gov (United States)

Mack, Thomas J.; Chornack, Michael P.; Flanagan, Sarah M.; Chalmers, Ann T.

2014-01-01

The hydrogeology and water quality of the Chakari Basin, a 391-square-kilometer (km2) watershed near Kabul, Afghanistan, was assessed by the U.S. Geological Survey and the Afghanistan Geological Survey to provide an understanding of the water resources in an area of Afghanistan with considerable copper and other mineral resources. Water quality, chemical, and isotopic samples were collected at eight wells, four springs, one kareze, and the Chakari River in a basin-fill aquifer in the Chakari Basin by the Afghanistan Geological Survey. Results of water-quality analyses indicate that some water samples in the basin had concentrations of chemical constituents that exceeded World Health Organization guidelines for nitrate, sodium, and dissolved solids and some of the samples also had elevated concentrations of trace elements, such as copper, selenium, strontium, uranium, and zinc. Chemical and isotopic analyses, including for tritium, chlorofluorocarbons, and carbon-14, indicate that most wells contain water with a mixture of ages from young (years to decades) to old (several thousand years). Three wells contained groundwater that had modeled ages ranging from 7,200 to 7,900 years old. Recharge from precipitation directly on the basin-fill aquifer, which covers an area of about 150 km2, is likely to be very low (7 × 10-5 meters per day) or near zero. Most recharge to this aquifer is likely from rain and snowmelt on upland areas and seepage losses and infiltration of water from streams crossing the basin-fill aquifer. It is likely that the older water in the basin-fill aquifer is groundwater that has travelled along long and (or) slow flow paths through the fractured bedrock mountains surrounding the basin. The saturated basin-fill sediments in most areas of the basin are probably about 20 meters thick and may be about 30 to 60 meters thick in most areas near the center of the Chakari Basin. The combination of low recharge and little storage indicates that groundwater

Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.

Science.gov (United States)

He, Tianliang; Li, Hongyun; Zhang, Xiaobo

2017-07-11

Viruses are believed to be responsible for the mortality of host organisms. However, some recent investigations reveal that viruses may be essential for host survival. To date, it remains unclear whether viruses are beneficial or harmful to their hosts. To reveal the roles of viruses in the virus-host interactions, viromes and microbiomes of sediment samples from three deep-sea hydrothermal vents were explored in this study. To exclude the influence of exogenous DNAs on viromes, the virus particles were purified with nuclease (DNase I and RNase A) treatments and cesium chloride density gradient centrifugation. The metagenomic analysis of viromes without exogenous DNA contamination and microbiomes of vent samples indicated that viruses had compensation effects on the metabolisms of their host microorganisms. Viral genes not only participated in most of the microbial metabolic pathways but also formed branched pathways in microbial metabolisms, including pyrimidine metabolism; alanine, aspartate, and glutamate metabolism; nitrogen metabolism and assimilation pathways of the two-component system; selenocompound metabolism; aminoacyl-tRNA biosynthesis; and amino sugar and nucleotide sugar metabolism. As is well known, deep-sea hydrothermal vent ecosystems exist in relatively isolated environments which are barely influenced by other ecosystems. The metabolic compensation of hosts mediated by viruses might represent a very important aspect of virus-host interactions. IMPORTANCE Viruses are the most abundant biological entities in the oceans and have very important roles in regulating microbial community structure and biogeochemical cycles. The relationship between virus and host microbes is broadly thought to be that of predator and prey. Viruses can lyse host cells to control microbial population sizes and affect community structures of hosts by killing specific microbes. However, viruses also influence their hosts through manipulation of bacterial metabolism. We found

Expected Net Benefit of Vaccinating Rangeland Sheep against Bluetongue Virus Using a Modified-Live versus Killed Virus Vaccine.

Science.gov (United States)

Munsick, Tristram R; Peck, Dannele E; Ritten, John P; Jones, Randall; Jones, Michelle; Miller, Myrna M

2017-01-01

Recurring outbreaks of bluetongue virus in domestic sheep of the US Intermountain West have prompted questions about the economic benefits and costs of vaccinating individual flocks against bluetongue (BT) disease. We estimate the cost of a BT outbreak on a representative rangeland sheep operation in the Big Horn Basin of the state of Wyoming using enterprise budgets and stochastic simulation. The latter accounts for variability in disease severity and lamb price, as well as uncertainty about when an outbreak will occur. We then estimate the cost of purchasing and administering a BT vaccine. Finally, we calculate expected annual net benefit of vaccinating under various outbreak intervals. Expected annual net benefit is calculated for both a killed virus (KV) vaccine and modified-live virus vaccine, using an observed price of $0.32 per dose for modified-live and an estimated price of $1.20 per dose for KV. The modified-live vaccine's expected annual net benefit has a 100% chance of being positive for an outbreak interval of 5, 10, or 20 years, and a 77% chance of being positive for a 50-year interval. The KV vaccine's expected annual net benefit has a 97% chance of being positive for a 5-year outbreak interval, and a 42% chance of being positive for a 10-year interval. A KV vaccine is, therefore, unlikely to be economically attractive to producers in areas exposed less frequently to BT disease. A modified-live vaccine, however, requires rigorous authorization before legal use can occur in Wyoming. To date, no company has requested to manufacture a modified-live vaccine for commercial use in Wyoming. The KV vaccine poses less risk to sheep reproduction and less risk of unintentional spread, both of which facilitate approval for commercial production. Yet, our results show an economically consequential tradeoff between a KV vaccine's relative safety and higher cost. Unless the purchase price is reduced below our assumed $1.20 per dose, producer adoption of a KV

Colorado Basin Structure and Rifting, Argentine passive margin

Science.gov (United States)

Autin, Julia; Scheck-Wenderoth, Magdalena; Loegering, Markus; Anka, Zahie; Vallejo, Eduardo; Rodriguez, Jorge; Marchal, Denis; Reichert, Christian; di Primio, Rolando

2010-05-01

The Argentine margin presents a strong segmentation with considerable strike-slip movements along the fracture zones. We focus on the volcanic segment (between the Salado and Colorado transfer zones), which is characterized by seaward dipping reflectors (SDR) all along the ocean-continent transition [e.g. Franke et al., 2006; Gladczenko et al., 1997; Hinz et al., 1999]. The segment is structured by E-W trending basins, which differs from the South African margin basins and cannot be explained by classical models of rifting. Thus the study of the relationship between the basins and the Argentine margin itself will allow the understanding of their contemporary development. Moreover the comparison of the conjugate margins suggests a particular evolution of rifting and break-up. We firstly focus on the Colorado Basin, which is thought to be the conjugate of the well studied Orange Basin [Hirsch et al., 2009] at the South African margin [e.g. Franke et al., 2006]. This work presents results of a combined approach using seismic interpretation and structural, isostatic and thermal modelling highlighting the structure of the crust. The seismic interpretation shows two rift-related discordances: one intra syn-rift and the break-up unconformity. The overlying sediments of the sag phase are less deformed (no sedimentary wedges) and accumulated before the generation of oceanic crust. The axis of the Colorado Basin trends E-W in the western part, where the deepest pre-rift series are preserved. In contrast, the basin axis turns to a NW-SE direction in its eastern part, where mainly post-rift sediments accumulated. The most distal part reaches the margin slope and opens into the oceanic basin. The general basin direction is almost orthogonal to the present-day margin trend. The most frequent hypothesis explaining this geometry is that the Colorado Basin is an aborted rift resulting from a previous RRR triple junction [e.g. Franke et al., 2002]. The structural interpretation

Viruses in reptiles.

Science.gov (United States)

Ariel, Ellen

2011-09-21

The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself.

The water footprint of agricultural products in European river basins

International Nuclear Information System (INIS)

Vanham, D; Bidoglio, G

2014-01-01

This work quantifies the agricultural water footprint (WF) of production (WF prod, agr ) and consumption (WF cons, agr ) and the resulting net virtual water import (netVW i, agr ) of 365 European river basins for a reference period (REF, 1996–2005) and two diet scenarios (a healthy diet based upon food-based dietary guidelines (HEALTHY) and a vegetarian (VEG) diet). In addition to total (tot) amounts, a differentiation is also made between the green (gn), blue (bl) and grey (gy) components. River basins where the REF WF cons, agr, tot exceeds the WF prod, agr, tot (resulting in positive netVW i, agr, tot values), are found along the London–Milan axis. These include the Thames, Scheldt, Meuse, Seine, Rhine and Po basins. River basins where the WF prod, agr, tot exceeds the WF cons, agr, tot are found in Western France, the Iberian Peninsula and the Baltic region. These include the Loire, Ebro and Nemunas basins. Under the HEALTHY diet scenario, the WF cons, agr, tot of most river basins decreases (max −32%), although it was found to increase in some basins in northern and eastern Europe. This results in 22 river basins, including the Danube, shifting from being net VW importers to being net VW exporters. A reduction (max −46%) in WF cons, agr, tot is observed for all but one river basin under the VEG diet scenario. In total, 50 river basins shift from being net VW importers to being net exporters, including the Danube, Seine, Rhone and Elbe basins. Similar observations are made when only the gn + bl and gn components are assessed. When analysing only the bl component, a different river basin pattern is observed. (letters)

A REVIEW ON ZIKA VIRUS (ZIKV) -A DREADFUL MEMBER OF THE VIRUS FAMILY FLAVIVIRIDAE

OpenAIRE

1Rafiya Begum, 2 Raafia Aseena, 3Nuha Rasheed and 4 Abdul Saleem Mohammad

2017-01-01

Research on zika virus examine the virus that is spread to humans through a mosquito bite, with symptoms that include fever, rash, joint pain, and conjuctivities. For most people zika virus is not necessarily anything to worry, as it is not fatal and symptoms are generally mild for period up to a week. Hospitalization because of zika virus is almost always not necessary. However, the zika virus can be extremely dangerous to pregnant womes. Key Words: Zika, virus, transmission, fatal, flavivir...

Vietnamese sedimentary basins: geological evolution and petroleum potential

Energy Technology Data Exchange (ETDEWEB)

Fyhn, M.B.W.; Petersen, Henrik I.; Mathiesen, A.; Nielsen, Lars H.; Pedersen, Stig A.S.; Lindstroem, S.; Bojesen-Koefoed, J.A.; Abatzis, I.; Boldreel, L.O.

2010-07-15

The Geological Survey of Denmark and Greenland has worked in Vietnam since 1995 to assess the geology and petroleum potential of the Vietnamese basins. Since 2002 the work has been carried out in cooperation with the Department of Geography and Geology, University of Copenhagen, as part of the ENRECA project (Enhancement of Research Capacity in Developing Countries). The ENRECA project has already completed two phases and a third and final phase has recently started. The initial phase focused on the Phu Khanh and the Song Hong Basins located in the South China Sea offshore north and central Vietnam and the smaller onshore Song Ba Trough. During the second ENRECA phase, completed in 2009, attention shifted towards the Malay - Tho Chu and Phu Quoc basins located in the Gulf of Thailand, SSW of Vietnam. The Phu Quoc Basin continues onshore to the north to form part of the mountainous area between Vietnam and Cambodia. In the recently started third phase of the project, the focus remains on the Phu Quoc Basin in addition to a revisit to the Song Hong Basin on the north Vietnamese margin and onshore beneath the Song Hong (Red River) delta. (LN)

Criticality evaluations of scrambled fuel in water basin storage

International Nuclear Information System (INIS)

Fast, E.

1989-01-01

Fuel stored underwater in the Idaho Chemical Processing Plant basins has been subjected to the usual criticality safety evaluations to assure safe storage configurations. Certain accident or emergency conditions, caused by corrosion or a seismic event, could change the fuel configuration and environment to invalidate previous calculations. Consideration is given here to such contingencies for fuel stored in three storage basins. One basin has fuel stored in racks, on a generally flat floor. In the other two basins, the fuel is stored on yokes and in baskets suspended from a monorail system. The floor is ribbed with 30.48-cm-thick and 80-cm-high concrete barriers across the basin width and spaced 30.48 cm apart. The suspended fuel is typically down to 15 cm above the floor of the channel between the concrete barriers. These basins each have 29 channels of 18 positions maximum per channel for a total of 522 possible positions, which are presently 77 and 49% occupied. The three basins are hydraulically interconnected. Several scenarios indicate possible changes in the fuel configuration. An earthquake could rupture a basin wall or floor, allowing the water to drain from all basins. All levels of water would fall to the completely drained condition. Suspended fuel could drop and fall over within the channel. Corrosion might weaken the support systems or cause leaks in sealed fuel canisters. Calculations were made with the KENO-IV criticality program and the library of mostly Hansen-Roach 16-energy-group neutron cross sections

Faunal migration into the Late Permian Zechstein Basin

DEFF Research Database (Denmark)

Sørensen, Anne Mehlin; Håkansson, Eckart; Stemmerik, Lars

2007-01-01

Late Permian bryozoans from the Wegener Halvø, Ravnefjeld and Schuchert Formations in East Greenland have been investigated. 14 genera are recognised.      Integration of the new bryozoan data from the Upper Permian of East Greenland with data on the distribution of Permian bryozoans along...... the northern margin of Pangea is used to test hypotheses concerning Late Palaeozoic evolution of the North Atlantic region. During the Permian, the Atlantic rift system formed a seaway between Norway and Greenland from the boreal Barents Shelf to the warm and arid Zechstein Basin. This seaway is considered...... to be the only marine connection to the Zechstein Basin and therefore the only possible migration route for bryozoans to enter the basin. The distribution of Permian bryozoans is largely in keeping with such a connection from the cool Barents Shelf past the East Greenland Basin to the warm Zechstein Basin...

Magmatism and petroleum exploration in the Brazilian Paleozoic basins

Energy Technology Data Exchange (ETDEWEB)

Thomaz Filho, Antonio; Antonioli, Luzia [Universidade do Estado do Rio de Janeiro, Faculdade de Geologia, Rua Sao Francisco Xavier, no 524/2030, CEP 20550-900, Rio de Janeiro, RJ (Brazil); Mizusaki, Ana Maria Pimentel [Universidade Federal do Rio Grande do Sul, Instituto de Geociencias, Avenida Bento Goncalves, no 9500, Campus do Vale, CEP 91509-900, Porto Alegre, RS (Brazil)

2008-02-15

Petroleum exploration in the Paleozoic sedimentary basins of Brazil has proven very challenging for explorationists. Except for the Solimoes Basin, in which transcurrent tectonism formed prospective structural highs, Brazilian Paleozoic basins lack intense structural deformation, and hence the detection and prospecting of place is often difficult. Magmatic intrusive and associated rocks in all these basins have traditionally been considered heat sources and hydrocarbon traps. The role of tholeiitic basic dikes in the generation, migration and accumulation of petroleum in the Anhembi oil occurrence (Sao Paulo State) is discussed herein. It follows that similar geological settings in other Paleozoic basins can be regarded as promising sites for oil accumulation that warrant investigation via modern geological and geophysical methods. (author)

Type C virus activation in nontransformed mouse cells by uv-irradiated herpes simplex virus

Energy Technology Data Exchange (ETDEWEB)

Hampar, B. (National Institutes of Health, Bethesda, MD); Hatanaka, M.; Aulakh, G.; Derge, J.G.; Lee, L.; Showalter, S.

1977-02-01

Infection of nontransformed mouse cells with uv-irradiated herpes simplex virus (uv-HSV) resulted in the activation of an endogenous xenotropic (x-tropic) type C virus. Synthesis of type C virus persisted for only a few days, with most of the virus remaining cell associated. The levels of type C virus activated by uv-HSV varied depending on the multiplicity of infection (m.o.i.) and the uv dose. At low uv doses, where cell killing occurred, little or no type C virus synthesis was observed. Maximum levels of type C virus synthesis were observed with the minimum uv dose which eliminated cell killing by HSV. Synthesis of type C virus, albeit at lower levels, was still observed at uv doses beyond those required to prevent cell killing.

Type C virus activation in nontransformed mouse cells by uv-irradiated herpes simplex virus

International Nuclear Information System (INIS)

Hampar, B.; Hatanaka, M.; Aulakh, G.; Derge, J.G.; Lee, L.; Showalter, S.

1977-01-01

Infection of nontransformed mouse cells with uv-irradiated herpes simplex virus (uv-HSV) resulted in the activation of an endogenous xenotropic (x-tropic) type C virus. Synthesis of type C virus persisted for only a few days, with most of the virus remaining cell associated. The levels of type C virus activated by uv-HSV varied depending on the multiplicity of infection (m.o.i.) and the uv dose. At low uv doses, where cell killing occurred, little or no type C virus synthesis was observed. Maximum levels of type C virus synthesis were observed with the minimum uv dose which eliminated cell killing by HSV. Synthesis of type C virus, albeit at lower levels, was still observed at uv doses beyond those required to prevent cell killing

A NEW METHOD FOR ENVIRONMENTAL FLOW ASSESSMENT BASED ON BASIN GEOLOGY. APPLICATION TO EBRO BASIN.

Science.gov (United States)

2018-02-01

The determination of environmental flows is one of the commonest practical actions implemented on European rivers to promote their good ecological status. In Mediterranean rivers, groundwater inflows are a decisive factor in streamflow maintenance. This work examines the relationship between the lithological composition of the Ebro basin (Spain) and dry season flows in order to establish a model that can assist in the calculation of environmental flow rates.Due to the lack of information on the hydrogeological characteristics of the studied basin, the variable representing groundwater inflows has been estimated in a very simple way. The explanatory variable used in the proposed model is easy to calculate and is sufficiently powerful to take into account all the required characteristics.The model has a high coefficient of determination, indicating that it is accurate for the intended purpose. The advantage of this method compared to other methods is that it requires very little data and provides a simple estimate of environmental flow. It is also independent of the basin area and the river section order.The results of this research also contribute to knowledge of the variables that influence low flow periods and low flow rates on rivers in the Ebro basin.

Three-dimensional geologic mapping of the Cenozoic basin fill, Amargosa Desert basin, Nevada and California

Science.gov (United States)

Taylor, Emily M.; Sweetkind, Donald S.

2014-01-01

Understanding the subsurface geologic framework of the Cenozoic basin fill that underlies the Amargosa Desert in southern Nevada and southeastern California has been improved by using borehole data to construct three-dimensional lithologic and interpreted facies models. Lithologic data from 210 boreholes from a 20-kilometer (km) by 90-km area were reduced to a limited suite of descriptors based on geologic knowledge of the basin and distributed in three-dimensional space using interpolation methods. The resulting lithologic model of the Amargosa Desert basin portrays a complex system of interfingered coarse- to fine-grained alluvium, playa and palustrine deposits, eolian sands, and interbedded volcanic units. Lithologic units could not be represented in the model as a stacked stratigraphic sequence due to the complex interfingering of lithologic units and the absence of available time-stratigraphic markers. Instead, lithologic units were grouped into interpreted genetic classes, such as playa or alluvial fan, to create a three-dimensional model of the interpreted facies data. Three-dimensional facies models computed from these data portray the alluvial infilling of a tectonically formed basin with intermittent internal drainage and localized regional groundwater discharge. The lithologic and interpreted facies models compare favorably to resistivity, aeromagnetic, and geologic map data, lending confidence to the interpretation.

The evolution of a Late Cretaceous-Cenozoic intraplate basin (Duaringa Basin), eastern Australia: evidence for the negative inversion of a pre-existing fold-thrust belt

Science.gov (United States)

Babaahmadi, Abbas; Sliwa, Renate; Esterle, Joan; Rosenbaum, Gideon

2017-12-01

The Duaringa Basin in eastern Australia is a Late Cretaceous?-early Cenozoic sedimentary basin that developed simultaneously with the opening of the Tasman and Coral Seas. The basin occurs on the top of an earlier (Permian-Triassic) fold-thrust belt, but the negative inversion of this fold-thrust belt, and its contribution to the development of the Duaringa Basin, are not well understood. Here, we present geophysical datasets, including recently surveyed 2D seismic reflection lines, aeromagnetic and Bouguer gravity data. These data provide new insights into the structural style in the Duaringa Basin, showing that the NNW-striking, NE-dipping, deep-seated Duaringa Fault is the main boundary fault that controlled sedimentation in the Duaringa Basin. The major activity of the Duaringa Fault is observed in the southern part of the basin, where it has undergone the highest amount of displacement, resulting in the deepest and oldest depocentre. The results reveal that the Duaringa Basin developed in response to the partial negative inversion of the pre-existing Permian-Triassic fold-thrust belt, which has similar orientation to the extensional faults. The Duaringa Fault is the negative inverted part of a single Triassic thrust, known as the Banana Thrust. Furthermore, small syn-depositional normal faults at the base of the basin likely developed due to the reactivation of pre-existing foliations, accommodation faults, and joints associated with Permian-Triassic folds. In contrast to equivalent offshore basins, the Duaringa Basin lacks a complex structural style and thick syn-rift sediments, possibly because of the weakening of extensional stresses away from the developing Tasman Sea.

Chikungunya virus

Science.gov (United States)

Chikungunya virus infection; Chikungunya ... Where Chikungunya is Found Before 2013, the virus was found in Africa, Asia, Europe, and the Indian and Pacific oceans. In late 2013, outbreaks occurred for the first time in the ...

Perinatal hepatitis B virus detection by hepatitis B virus-DNA analysis.

OpenAIRE

De Virgiliis, S; Frau, F; Sanna, G; Turco, M P; Figus, A L; Cornacchia, G; Cao, A

1985-01-01

Maternal transmission of hepatitis B virus infection in relation to the hepatitis B e antigen/antibody system and serum hepatitis B virus-DNA were evaluated. Results indicate that hepatitis B virus-DNA analysis can identify hepatitis B serum antigen positive mothers who may transmit infection to their offspring.

Virus like particle-based vaccines against emerging infectious disease viruses.

Science.gov (United States)

Liu, Jinliang; Dai, Shiyu; Wang, Manli; Hu, Zhihong; Wang, Hualin; Deng, Fei

2016-08-01

Emerging infectious diseases are major threats to human health. Most severe viral disease outbreaks occur in developing regions where health conditions are poor. With increased international travel and business, the possibility of eventually transmitting infectious viruses between different countries is increasing. The most effective approach in preventing viral diseases is vaccination. However, vaccines are not currently available for numerous viral diseases. Virus-like particles (VLPs) are engineered vaccine candidates that have been studied for decades. VLPs are constructed by viral protein expression in various expression systems that promote the selfassembly of proteins into structures resembling virus particles. VLPs have antigenicity similar to that of the native virus, but are non-infectious as they lack key viral genetic material. VLP vaccines have attracted considerable research interest because they offer several advantages over traditional vaccines. Studies have shown that VLP vaccines can stimulate both humoral and cellular immune responses, which may offer effective antiviral protection. Here we review recent developments with VLP-based vaccines for several highly virulent emerging or re-emerging infectious diseases. The infectious agents discussed include RNA viruses from different virus families, such as the Arenaviridae, Bunyaviridae, Caliciviridae, Coronaviridae, Filoviridae, Flaviviridae, Orthomyxoviridae, Paramyxoviridae, and Togaviridae families.

The "normal" elongation of river basins

Science.gov (United States)

Castelltort, Sebastien

2013-04-01

The spacing between major transverse rivers at the front of Earth's linear mountain belts consistently scales with about half of the mountain half-width [1], despite strong differences in climate and rock uplift rates. Like other empirical measures describing drainage network geometry this result seems to indicate that the form of river basins, among other properties of landscapes, is invariant. Paradoxically, in many current landscape evolution models, the patterns of drainage network organization, as seen for example in drainage density and channel spacing, seem to depend on both climate [2-4] and tectonics [5]. Hovius' observation [1] is one of several unexplained "laws" in geomorphology that still sheds mystery on how water, and rivers in particular, shape the Earth's landscapes. This narrow range of drainage network shapes found in the Earth's orogens is classicaly regarded as an optimal catchment geometry that embodies a "most probable state" in the uplift-erosion system of a linear mountain belt. River basins currently having an aspect away from this geometry are usually considered unstable and expected to re-equilibrate over geological time-scales. Here I show that the Length/Width~2 aspect ratio of drainage basins in linear mountain belts is the natural expectation of sampling a uniform or normal distribution of basin shapes, and bears no information on the geomorphic processes responsible for landscape development. This finding also applies to Hack's [6] law of river basins areas and lengths, a close parent of Hovius' law. [1]Hovius, N. Basin Res. 8, 29-44 (1996) [2]Simpson, G. & Schlunegger, F. J. Geophys. Res. 108, 2300 (2003) [3]Tucker, G. & Bras, R. Water Resour. Res. 34, 2751-2764 (1998) [4]Tucker, G. & Slingerland, R. Water Resour. Res. 33, 2031-2047 (1997) [5]Tucker, G. E. & Whipple, K. X. J. Geophys. Res. 107, 1-1 (2002) [6]Hack, J. US Geol. Surv. Prof. Pap. 294-B (1957)

Immunogenicity of a modified-live virus vaccine against bovine viral diarrhea virus types 1 and 2, infectious bovine rhinotracheitis virus, bovine parainfluenza-3 virus, and bovine respiratory syncytial virus when administered intranasally in young calves.

Science.gov (United States)

Xue, Wenzhi; Ellis, John; Mattick, Debra; Smith, Linda; Brady, Ryan; Trigo, Emilio

2010-05-14

The immunogenicity of an intranasally-administered modified-live virus (MLV) vaccine in 3-8 day old calves was evaluated against bovine viral diarrhea virus (BVDV) types 1 and 2, infectious bovine rhinotracheitis (IBR) virus, parainfluenza-3 (PI-3) virus and bovine respiratory syncytial virus (BRSV). Calves were intranasally vaccinated with a single dose of a multivalent MLV vaccine and were challenged with one of the respective viruses three to four weeks post-vaccination in five separate studies. There was significant sparing of diseases in calves intranasally vaccinated with the MLV vaccine, as indicated by significantly fewer clinical signs, lower rectal temperatures, reduced viral shedding, greater white blood cell and platelet counts, and less severe pulmonary lesions than control animals. This was the first MLV combination vaccine to demonstrate efficacy against BVDV types 1 and 2, IBR, PI-3 and BRSV in calves 3-8 days of age. Copyright 2010 Elsevier Ltd. All rights reserved.

Ocular Tropism of Respiratory Viruses

Science.gov (United States)

Rota, Paul A.; Tumpey, Terrence M.

2013-01-01

SUMMARY Respiratory viruses (including adenovirus, influenza virus, respiratory syncytial virus, coronavirus, and rhinovirus) cause a broad spectrum of disease in humans, ranging from mild influenza-like symptoms to acute respiratory failure. While species D adenoviruses and subtype H7 influenza viruses are known to possess an ocular tropism, documented human ocular disease has been reported following infection with all principal respiratory viruses. In this review, we describe the anatomical proximity and cellular receptor distribution between ocular and respiratory tissues. All major respiratory viruses and their association with human ocular disease are discussed. Research utilizing in vitro and in vivo models to study the ability of respiratory viruses to use the eye as a portal of entry as well as a primary site of virus replication is highlighted. Identification of shared receptor-binding preferences, host responses, and laboratory modeling protocols among these viruses provides a needed bridge between clinical and laboratory studies of virus tropism. PMID:23471620

Hydrologic studies within the Pasco Basin

International Nuclear Information System (INIS)

Spane, F.A. Jr.

1982-09-01

As part of the Basalt Waste Isolation Project (BWIP), hydrologic studies are being performed to provide an evaluation of groundwater systems within the Columbia River Basalt Group. These studies are focused on the Hanford Site, which is located within the Pasco Basin in south-central Washington. Hydrologic studies within the Pasco Basin involve the areal and vertical characterization of hydraulic head, hydrologic properties, and hydrochemical content for the various basalt groundwater systems. Currently, in excess of 150 test intervals have been tested for hydraulic properties, while in excess of 80 horizons have been analyzed for hydrochemical characteristics at about 30 borehole sites within the Pasco Basin. Data obtained from these studies provide input for numerical modeling of groundwater flow and solute transport. Results from numerical modeling are used for evaluating potential waste migration as a function of space and time. In the Pasco Basin, geologic structures influence groundwater flow patterns within basalt aquifer systems. Potentiometric data and hydrochemical evidence collected from recent studies indicate that geologic structures act as areal hydrologic barriers and in some instances, regions of enhanced vertical conductivity. 8 figures

GRAIL gravity observations of the transition from complex crater to peak-ring basin on the Moon: Implications for crustal structure and impact basin formation

Science.gov (United States)

Baker, David M. H.; Head, James W.; Phillips, Roger J.; Neumann, Gregory A.; Bierson, Carver J.; Smith, David E.; Zuber, Maria T.

2017-08-01

High-resolution gravity data from the Gravity Recovery and Interior Laboratory (GRAIL) mission provide the opportunity to analyze the detailed gravity and crustal structure of impact features in the morphological transition from complex craters to peak-ring basins on the Moon. We calculate average radial profiles of free-air anomalies and Bouguer anomalies for peak-ring basins, protobasins, and the largest complex craters. Complex craters and protobasins have free-air anomalies that are positively correlated with surface topography, unlike the prominent lunar mascons (positive free-air anomalies in areas of low elevation) associated with large basins. The Bouguer gravity anomaly profiles of complex craters are highly irregular, with central positive anomalies that are generally absent or not clearly tied to interior morphology. In contrast, gravity profiles for peak-ring basins (∼200 km to 580 km) are much more regular and are highly correlated with surface morphology. A central positive Bouguer anomaly is confined within the peak ring and a negative Bouguer anomaly annulus extends from the edge of the positive anomaly outward to about the rim crest. A number of degraded basins lacking interior peak rings have diameters and gravity patterns similar to those of well-preserved peak-ring basins. If these structures represent degraded peak-ring basins, the number of peak-ring basins on the Moon would increase by more than a factor of two to 34. The gravity anomalies within basins are interpreted to be due to uplift of the mantle confined within the peak ring and an annulus of thickened crust between the peak ring and rim crest. We hypothesize that mantle uplift is influenced by interaction between the transient cavity and the mantle. Further, mascon formation is generally disconnected from the number of basin rings formed and occurs over a wide range of basin sizes. These observations have important implications for models of basin and mascon formation on the Moon

Understanding Ebola Virus Transmission

Directory of Open Access Journals (Sweden)

Seth Judson

2015-02-01

Full Text Available An unprecedented number of Ebola virus infections among healthcare workers and patients have raised questions about our understanding of Ebola virus transmission. Here, we explore different routes of Ebola virus transmission between people, summarizing the known epidemiological and experimental data. From this data, we expose important gaps in Ebola virus research pertinent to outbreak situations. We further propose experiments and methods of data collection that will enable scientists to fill these voids in our knowledge about the transmission of Ebola virus.

Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep

OpenAIRE

bin Tarif, Abid; Lasecka, Lidia; Holzer, Barbara; Baron, Michael D

2012-01-01

Abstract Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV) and Ganjam virus (GV) are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated ...

Zika Virus

Science.gov (United States)

... through blood transfusions. There have been outbreaks of Zika virus in the United States, Africa, Southeast Asia, the ... not travel to areas where there is a Zika virus outbreak. If you do decide to travel, first ...

Configuration Management Plan for K Basins

International Nuclear Information System (INIS)

Weir, W.R.; Laney, T.

1995-01-01

This plan describes a configuration management program for K Basins that establishes the systems, processes, and responsibilities necessary for implementation. The K Basins configuration management plan provides the methodology to establish, upgrade, reconstitute, and maintain the technical consistency among the requirements, physical configuration, and documentation. The technical consistency afforded by this plan ensures accurate technical information necessary to achieve the mission objectives that provide for the safe, economic, and environmentally sound management of K Basins and the stored material. The configuration management program architecture presented in this plan is based on the functional model established in the DOE Standard, DOE-STD-1073-93, open-quotes Guide for Operational Configuration Management Programclose quotes

Estimating mountain basin-mean precipitation from streamflow using Bayesian inference

Science.gov (United States)

Henn, Brian; Clark, Martyn P.; Kavetski, Dmitri; Lundquist, Jessica D.

2015-10-01

Estimating basin-mean precipitation in complex terrain is difficult due to uncertainty in the topographical representativeness of precipitation gauges relative to the basin. To address this issue, we use Bayesian methodology coupled with a multimodel framework to infer basin-mean precipitation from streamflow observations, and we apply this approach to snow-dominated basins in the Sierra Nevada of California. Using streamflow observations, forcing data from lower-elevation stations, the Bayesian Total Error Analysis (BATEA) methodology and the Framework for Understanding Structural Errors (FUSE), we infer basin-mean precipitation, and compare it to basin-mean precipitation estimated using topographically informed interpolation from gauges (PRISM, the Parameter-elevation Regression on Independent Slopes Model). The BATEA-inferred spatial patterns of precipitation show agreement with PRISM in terms of the rank of basins from wet to dry but differ in absolute values. In some of the basins, these differences may reflect biases in PRISM, because some implied PRISM runoff ratios may be inconsistent with the regional climate. We also infer annual time series of basin precipitation using a two-step calibration approach. Assessment of the precision and robustness of the BATEA approach suggests that uncertainty in the BATEA-inferred precipitation is primarily related to uncertainties in hydrologic model structure. Despite these limitations, time series of inferred annual precipitation under different model and parameter assumptions are strongly correlated with one another, suggesting that this approach is capable of resolving year-to-year variability in basin-mean precipitation.

Structural Framework and Architecture of the Paleoproterozoic Bryah and Padbury Basins from Integrated Potential Field and Geological Datasets: Towards an Understanding of the Basin Evolution

Science.gov (United States)

Nigro R A Ramos, L.; Aitken, A.; Occhipinti, S.; Lindsay, M.

2017-12-01

The Bryah and Padbury Basins were developed along the northern margin of the Yilgarn Craton, in the southern portion of the Capricorn Orogen, which represents a Proterozoic tectonic zone that bounds the Yilgarn and Pilbara Cratons in Western Australia. These basins have been previously interpreted as developing in a rift, back-arc, and retro-arc foreland basins. Recent studies suggest that the Bryah Basin was deposited in a rift setting, while the overlying Padbury Basin evolved in a pro-foreland basin during the collision of the Yilgarn Craton and the Pilboyne block (formed by the Pilbara Craton and the Glenburgh Terrane), occurring in the Glenburgh Orogeny (2005-1960 Ma). This study focuses on characterizing the architecture and structural framework of the Bryah and Padbury Basins through analysis of geophysical and geological datasets, in order to better understand the different stages of the basins evolution. Gravity and magnetic data were used to define the main tectonic units and lithological boundaries, and to delineate major discontinuities in the upper and lower crust, as well as anomalies through a combination of map view interpretation and forward modelling. Geological mapping and drill core observations were linked with the geophysical interpretations. Fourteen magnetic domains are distinguished within the basins, while four main domains based on the Bouguer Anomaly are recognized. The highest gravity amplitude is related with an anomaly trending EW/NE-SW, which is coincident with the voluminous mafic rocks of the Bryah Basin, and may indicate the presence of an approximately 5km thick package of higher density mafic rocks. Magnetic depth estimations also indicate deep magnetic sources up to approximately 4,45km. These results can help to elucidate processes that occurred during the precursor rift of the early stages of the Bryah Basin, add information in relation to the basement control on sedimentation, allow the characterization of the varying

Riddled Basins of Attraction for Synchronized Type-I Intermittency

DEFF Research Database (Denmark)

Mancher, Martin; Nordahn, Morten; Mosekilde, Erik

1998-01-01

Chaotic mortion resticted to an invariant subspace of total phase space may be associated with basins of attraction that are riddled with holes belonging to the basin of another limiting state. We study the emergence of such basins of two coupled one-dimensional maps, each exhibiting type...

100KE/KW fuel storage basin surface volumetric factors

International Nuclear Information System (INIS)

Conn, K.R.

1996-01-01

This Supporting Document presents calculations of surface Volumetric factors for the 100KE and 100KW Fuel Storage Basins. These factors relate water level changes to basin loss or additions of water, or the equivalent water displacement volumes of objects added to or removed from the basin

Integrated Worker Radiation Dose Assessment for the K Basins

International Nuclear Information System (INIS)

NELSON, J.V.

1999-01-01

This report documents an assessment of the radiation dose workers at the K Basins are expected to receive in the process of removing spent nuclear fuel from the storage basins. The K Basins (K East and K West) are located in the Hanford 100K Area

Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep

Directory of Open Access Journals (Sweden)

bin Tarif Abid

2012-10-01

Full Text Available Abstract Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV and Ganjam virus (GV are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated it in a pilot study of the pathogenicity induced by two different isolates of NSDV/GV. One isolate was highly adapted to tissue culture, grew in most cell lines tested, and was essentially apathogenic in sheep. The second isolate appeared to be poorly adapted to cell culture and retained pathogenicity in sheep. The real-time PCR assay for virus easily detected 4 copies or less of the viral genome, and allowed a quantitative measure of the virus in whole blood. Measurement of the changes in cytokine mRNAs showed similar changes to those observed in humans infected by the closely related virus Crimean Congo hemorrhagic fever virus.

Ganjam virus/Nairobi sheep disease virus induces a pro-inflammatory response in infected sheep.

Science.gov (United States)

Bin Tarif, Abid; Lasecka, Lidia; Holzer, Barbara; Baron, Michael D

2012-10-19

Partly due to climate change, and partly due to changes of human habitat occupation, the impact of tick-borne viruses is increasing. Nairobi sheep disease virus (NSDV) and Ganjam virus (GV) are two names for the same virus, which causes disease in sheep and goats and is currently known to be circulating in India and East Africa. The virus is transmitted by ixodid ticks and causes a severe hemorrhagic disease. We have developed a real-time PCR assay for the virus genome and validated it in a pilot study of the pathogenicity induced by two different isolates of NSDV/GV. One isolate was highly adapted to tissue culture, grew in most cell lines tested, and was essentially apathogenic in sheep. The second isolate appeared to be poorly adapted to cell culture and retained pathogenicity in sheep. The real-time PCR assay for virus easily detected 4 copies or less of the viral genome, and allowed a quantitative measure of the virus in whole blood. Measurement of the changes in cytokine mRNAs showed similar changes to those observed in humans infected by the closely related virus Crimean Congo hemorrhagic fever virus.

Transmission of Influenza A Viruses

Science.gov (United States)

Neumann, Gabriele; Kawaoka, Yoshihiro

2015-01-01

Influenza A viruses cause respiratory infections that range from asymptomatic to deadly in humans. Widespread outbreaks (pandemics) are attributable to ‘novel’ viruses that possess a viral hemagglutinin (HA) gene to which humans lack immunity. After a pandemic, these novel viruses form stable virus lineages in humans and circulate until they are replaced by other novel viruses. The factors and mechanisms that facilitate virus transmission among hosts and the establishment of novel lineages are not completely understood, but the HA and basic polymerase 2 (PB2) proteins are thought to play essential roles in these processes by enabling avian influenza viruses to infect mammals and replicate efficiently in their new host. Here, we summarize our current knowledge of the contributions of HA, PB2, and other viral components to virus transmission and the formation of new virus lineages. PMID:25812763

Palaeocene-early Eocene inversion of the Phuquoc-Kampot Som Basin

DEFF Research Database (Denmark)

Fyhn, Michael B. W.; Pedersen, Stig A.S.; Boldreel, Lars Ole

2010-01-01

/Pb analysis is used to unravel the basin history. This reveals a hitherto unknown earliest Palaeogene basin inversion associated with the Luconian suturing to SE Asia and the shutdown of palaeo-Pacific subduction underneath SE Asia. The Phuquoc–Kampot Som Basin and the Khorat Basin in Thailand constitute...... the erosional remnants of a larger basin that covered large parts of SE Asia in Late Mesozoic time, and subsequently became segregated during earliest Palaeogene inversion and erosion. Inversion was focused along the several hundred kilometres long Kampot and Khmer–Chanthaburi fold belts that confine...

New frontiers in oncolytic viruses: optimizing and selecting for virus strains with improved efficacy

Directory of Open Access Journals (Sweden)

Lundstrom K

2018-02-01

Full Text Available Kenneth Lundstrom PanTherapeutics, Lutry, Switzerland Abstract: Oncolytic viruses have demonstrated selective replication and killing of tumor cells. Different types of oncolytic viruses – adenoviruses, alphaviruses, herpes simplex viruses, Newcastle disease viruses, rhabdoviruses, Coxsackie viruses, and vaccinia viruses – have been applied as either naturally occurring or engineered vectors. Numerous studies in animal-tumor models have demonstrated substantial tumor regression and prolonged survival rates. Moreover, clinical trials have confirmed good safety profiles and therapeutic efficacy for oncolytic viruses. Most encouragingly, the first cancer gene-therapy drug – Gendicine, based on oncolytic adenovirus type 5 – was approved in China. Likewise, a second-generation oncolytic herpes simplex virus-based drug for the treatment of melanoma has been registered in the US and Europe as talimogene laherparepvec. Keywords: immunotherapy, viral vectors, clinical trials, drug approval

Postmortem stability of Ebola virus.

Science.gov (United States)

Prescott, Joseph; Bushmaker, Trenton; Fischer, Robert; Miazgowicz, Kerri; Judson, Seth; Munster, Vincent J

2015-05-01

The ongoing Ebola virus outbreak in West Africa has highlighted questions regarding stability of the virus and detection of RNA from corpses. We used Ebola virus-infected macaques to model humans who died of Ebola virus disease. Viable virus was isolated <7 days posteuthanasia; viral RNA was detectable for 10 weeks.

Temporal and basin-specific population trends of quagga mussels on soft sediment of a multi-basin reservoir

Science.gov (United States)

Caldwell, Timothy J; Rosen, Michael R.; Chandra, Sudeep; Acharya, Kumud; Caires, Andrea M; Davis, Clinton J.; Thaw, Melissa; Webster, Daniel M.

2015-01-01

Invasive quagga (Dreissena bugnesis) and zebra (Dreissena ploymorpha) mussels have rapidly spread throughout North America. Understanding the relationships between environmental variables and quagga mussels during the early stages of invasion will help management strategies and allow researchers to predict patterns of future invasions. Quagga mussels were detected in Lake Mead, NV/AZ in 2007, we monitored early invasion dynamics in 3 basins (Boulder Basin, Las Vegas Bay, Overton Arm) bi-annually from 2008-2011. Mean quagga density increased over time during the first year of monitoring and stabilized for the subsequent two years at the whole-lake scale (8 to 132 individuals·m-2, geometric mean), in Boulder Basin (73 to 875 individuals·m-2), and in Overton Arm(2 to 126 individuals·m-2). In Las Vegas Bay, quagga mussel density was low (9 to 44 individuals·m-2), which was correlated with high sediment metal concentrations and warmer (> 30°C) water temperatures associated with that basin. Carbon content in the sediment increased with depth in Lake Mead and during some sampling periods quagga density was also positively correlated with depth, but more research is required to determine the significance of this interaction. Laboratory growth experiments suggested that food quantity may limit quagga growth in Boulder Basin, indicating an opportunity for population expansion in this basin if primary productivity were to increase, but was not the case in Overton Arm. Overall quagga mussel density in Lake Mead is highly variable and patchy, suggesting that temperature, sediment size, and sediment metal concentrations, and sediment carbon content all contribute to mussel distribution patterns. Quagga mussel density in the soft sediment of Lake Mead expanded during initial colonization, and began to stabilize approximately 3 years after the initial invasion.

A Foxtail mosaic virus Vector for Virus-Induced Gene Silencing in Maize.

Science.gov (United States)

Mei, Yu; Zhang, Chunquan; Kernodle, Bliss M; Hill, John H; Whitham, Steven A

2016-06-01

Plant viruses have been widely used as vectors for foreign gene expression and virus-induced gene silencing (VIGS). A limited number of viruses have been developed into viral vectors for the purposes of gene expression or VIGS in monocotyledonous plants, and among these, the tripartite viruses Brome mosaic virus and Cucumber mosaic virus have been shown to induce VIGS in maize (Zea mays). We describe here a new DNA-based VIGS system derived from Foxtail mosaic virus (FoMV), a monopartite virus that is able to establish systemic infection and silencing of endogenous maize genes homologous to gene fragments inserted into the FoMV genome. To demonstrate VIGS applications of this FoMV vector system, four genes, phytoene desaturase (functions in carotenoid biosynthesis), lesion mimic22 (encodes a key enzyme of the porphyrin pathway), iojap (functions in plastid development), and brown midrib3 (caffeic acid O-methyltransferase), were silenced and characterized in the sweet corn line Golden × Bantam. Furthermore, we demonstrate that the FoMV infectious clone establishes systemic infection in maize inbred lines, sorghum (Sorghum bicolor), and green foxtail (Setaria viridis), indicating the potential wide applications of this viral vector system for functional genomics studies in maize and other monocots. © 2016 American Society of Plant Biologists. All Rights Reserved.

Morphometric analysis of the Marmara Sea river basins, Turkey

Science.gov (United States)

Elbaşı, Emre; Ozdemir, Hasan

2014-05-01

The drainage basin, the fundamental unit of the fluvial landscape, has been focus of research aimed at understanding the geometric characteristics of the master channel and its tributary network. This geometry is referred to as the basin morphometry and is nicely reviewed by Abrahams (1984). A great amount of research has focused on geometric characteristic of drainage basins, including the topology of the stream networks, and quantitative description of drainage texture, pattern, shape, and relief characteristics. Evaluation of morphometric parameters necessitates the analysis of various drainage parameters such as ordering of the various streams, measurement of basin area and perimeter, length of drainage channels, drainage density (Dd), stream frequency (Fs), bifurcation ratio (Rb), texture ratio (T), basin relief (Bh), Ruggedness number (Rn), time of concentration (Tc), hypsometric curve and integral (Hc and Hi) (Horton, 1932, Schumn, 1956, Strahler, 1957; Verstappen 1983; Keller and Pinter, 2002; Ozdemir and Bird, 2009). These morphometric parameters have generally been used to predict flood peaks, to assess sediment yield, and to estimate erosion rates in the basins. River basins of the Marmara Sea, has an area of approximately 40,000 sqkm, are the most important basins in Turkey based on their dense populations, industry and transportation systems. The primary aim of this study is to determine and analyse of morphometric characteristics of the Marmara Sea river basins using 10 m resolution Digital Elevation Model (DEM) and to evaluate of the results. For these purposes, digital 10 m contour maps scaled 1:25000 and geological maps scaled 1:100000 were used as the main data sources in the study. 10 m resolution DEM data were created using the contour maps and then drainage networks and their watersheds were extracted using D8 pour point model. Finally, linear, areal and relief morphometries were applied to the river basins using Geographic Information Systems

Constraining drivers of basin exhumation in the Molasse Basin by combining low-temperature thermochronology, thermal history and kinematic modeling

Science.gov (United States)

Luijendijk, Elco; von Hagke, Christoph; Hindle, David

2017-04-01

Due to a wealth of geological and thermochronology data the northern foreland basin of the European Alps is an ideal natural laboratory for understanding the dynamics of foreland basins and their interaction with surface and geodynamic processes. The northern foreland basin of the Alps has been exhumed since the Miocene. The timing, rate and cause of this phase of exhumation are still enigmatic. We compile all available thermochronology and organic maturity data and use a new thermal history model, PyBasin, to quantify the rate and timing of exhumation that can explain these data. In addition we quantify the amount of tectonic exhumation using a new kinematic model for the part of the basin that is passively moved above the detachment of the Jura Mountains. Our results show that the vitrinite reflectance, apatite fission track data and cooling rates show no clear difference between the thrusted and folded part of the foreland basin and the undeformed part of the foreland basin. The undeformed plateau Molasse shows a high rate of cooling during the Neogene of 40 to 100 °C, which is equal to >1.0 km of exhumation. Calculated rates of exhumation suggest that drainage reorganization can only explain a small part of the observed exhumation and cooling. Similarly, tectonic transport over a detachment ramp cannot explain the magnitude, timing and wavelength of the observed cooling signal. We conclude that the observed cooling rates suggest large wavelength exhumation that is probably caused by lithospheric-scale processes. In contrast to previous studies we find that the timing of exhumation is poorly constrained. Uncertainty analysis shows that models with timing starting as early as 12 Ma or as late as 2 Ma can all explain the observed data.

Use of hydrological modelling and isotope techniques in Guvenc basin

International Nuclear Information System (INIS)

Altinbilek, D.

1991-07-01

The study covers the work performed under Project No. 335-RC-TUR-5145 entitled ''Use of Hydrologic Modelling and Isotope Techniques in Guvenc Basin'' and is an initial part of a program for estimating runoff from Central Anatolia Watersheds. The study presented herein consists of mainly three parts: 1) the acquisition of a library of rainfall excess, direct runoff and isotope data for Guvenc basin; 2) the modification of SCS model to be applied to Guvenc basin first and then to other basins of Central Anatolia for predicting the surface runoff from gaged and ungaged watersheds; and 3) the use of environmental isotope technique in order to define the basin components of streamflow of Guvenc basin. 31 refs, figs and tabs

Impact of land-use and climatic changes on hydrology of the Himalayan Basin: A case study of the Kosi Basin

Science.gov (United States)

Sharma, Keshav Prasad

1997-10-01

Land-use and climatic changes are of major concern in the Himalayan region because of their potential impacts on a predominantly agriculture-based economy and a regional hydrology dominated by strong seasonality. Such concerns are not limited to any particular basin but exist throughout the region including the downstream plain areas. As a representative basin of the Himalayas, we studied the Kosi basin (54,000 km2) located in the mountainous area of the central Himalayan region. We analyzed climatic and hydrologic information to assess the impacts of existing and potential future land-use and climatic changes over the basin. The assessment of anthropogenic inputs showed that the population grew at a compound growth rate of about one percent per annum over the basin during the last four decades. The comparison of land-use data based on the surveys made in the 1960s, and the surveys of 1978-79 did not reveal noticeable trends in land-use change. Analysis of meteorological and hydrological trends using parametric and nonparametric statistics for monthly data from 1947 to 1993 showed some increasing tendency for temperature and precipitation. Statistical tests of hydrological trends indicated an overall decrease of discharge along mainstem Kosi River and its major tributaries. The decreasing trends of streamflow were more significant during low-flow months. Statistical analysis of homogeneity showed that the climatological as well as the hydrological trends were more localized in nature lacking distinct basinwide significance. Statistical analysis of annual sediment time series, available for a single station on the Kosi River did not reveal a significant trend. We used water balance, statistical correlation, and distributed deterministic modeling approaches to analyze the hydrological sensitivity of the basin to possible land-use and climatic changes. The results indicated a stronger influence of basin characteristics compared to climatic characteristics on flow

The Hack's law applied to young volcanic basin: the Tahiti case

Science.gov (United States)

Ye, F.; Sichoix, L.; Barriot, J.; Serafini, J.

2010-12-01

We study the channel morphology over the Tahiti island from the Hack’s law perspective. The Hack’s law is an empirical power relationship between basin drainage area and the length of its main channel. It had also been shown that drainage area becomes more elongate with increasing basin size. For typical continental basins, the exponent value lies between 0.47 for basins larger than 260,000 km2 and 0.7 for those spanning less than 20,720 km2 (Muller, 1973). In Tahiti, we extracted 27 principal basins ranging from 7 km2 to 90 km2 from a Digital Terrain Model of the island with a 5 m-resolution. We demonstrate that the Hack’s law still apply for such small basins (correlation coefficient R2=0.7) with an exponent value being approximately 0.5. It appears that the exponent value is influenced by the local geomorphic condition, and does not follow the previous study results (the exponent value decreases with increasing drainage area.) Our exponent value matches the result found w.r.t. debris-flow basins of China for drainage areas less than 100 km2 (Li et al., 2008). Otherwise, the young volcanic basins of Tahiti do not become longer and narrower with increasing basin size (R2=0.1). Besides, there is no correlation between the basin area and the basin convexity (R2=0). This means that there is no statistical change in basin shape with basin size. We present also the drainage area-slope relationship with respect to sediment or transport-limited processes. Key words: Hack’s law, channel morphology, DTM

Water and Benefit Sharing in Transboundary River Basins

Science.gov (United States)

Arjoon, D.; Tilmant, A.; Herrmann, M.

2015-12-01

Growing water scarcity underlies the importance of cooperation for the effective management of river basins, particularly in the context of international rivers in which unidirectional externalities can lead to asymmetric relationships between riparian countries. Studies have shown that significant economic benefits can be expected through basin-wide cooperation, however, the equitable partitioning of these benefits over the basin is less well studied and tends to overlook the importance of stakeholder input in the definition of equitability. In this study, an institutional arrangement to maximize welfare and then share the scarcity cost in a river basin is proposed. A river basin authority plays the role of a bulk water market operator, efficiently allocating bulk water to the users and collecting bulk water charges which are then equitably redistributed among water users. This highly regulated market restrains the behaviour of water users to control externalities and to ensure basin-wide coordination, enhanced efficiency, and the equitable redistribution of the scarcity cost. The institutional arrangement is implemented using the Eastern Nile River basin as a case study. The importance of this arrangement is that it can be adopted for application in negotiations to cooperate in trans-boundary river basins. The benefit sharing solution proposed is more likely to be perceived as equitable because water users help define the sharing rule. As a result, the definition of the sharing rule is not in question, as it would be if existing rules, such as bankruptcy rules or cooperative game theory solutions, are applied, with their inherent definitions of fairness. Results of the case study show that the sharing rule is predictable. Water users can expect to receive between 93.5% and 95% of their uncontested benefits (benefits that they expect to receive if water was not rationed), depending on the hydrologic scenario.

Geochemical element mobility during the history of a Paleo-proterozoic clastic sedimentary basin, the Athabasca Basin (Saskatchewan, Canada)

International Nuclear Information System (INIS)

Kister, Philippe

2003-01-01

In order to understand the mechanisms of migration and deposition of ore elements, it is essential to determine the timing, source, and destination of the geochemical element mass transfers and/or transportation on a scale encompassing the great sedimentary basins. The purpose of this study is to trace and to date the element migrations that occurred during the history of a Paleo-proterozoic clastic sedimentary basin, the Athabasca Basin, which hosts the world's largest and richest uranium deposits. As this geological environment was proved to be efficient to preserve high grade ore deposits for over more than one billion years, it provides an opportunity to study some natural analogues of deep geological nuclear waste storage. Five research topics were studied: 3D modelling of the distribution of normative minerals and trace elements on a basin-wide scale; U-Pb and Rb-Sr systematics; average chemical age estimation; thermodynamic modelling of the major mineralogical assemblages; U-Pb geochronology of uranium oxides. Some elements have remained immobile (Zr) since their initial sedimentary deposition, or were transferred from one phase to another (Al, Th). Other elements have been transported during fluid flow events that occurred: (1) on a basin wide scale during diagenesis (REE, Y, Sr, Fe), (2) at the unconformity and in the vicinity of the fault zones that represent preferential fluid flow pathways between the basement and the sandstone cover (U, Ni, As, B, Mg, K, Fe, Sr, REE), (3) during the late fault reactivation events associated with the basin uplift (U, Pb, Ni, S, Sr, REE). The successive tectonic events related to the geodynamical context that lead to the formation of these high-grade U concentrations (1460 Ma, 1335 Ma and 1275 Ma in the McArthur River deposit), did not however systematically occur in the whole basin (1275 Ma only at Shea Creek). The exceptionally high grade and tonnages of some deposits seem to be related to a larger number of U

Evolution of Xihulitu basin and its control to uranium ore-formation

International Nuclear Information System (INIS)

Guo Qingyin; Li Ziying; Dong Wenming

2003-01-01

There is a close relationship between basin filling succession and evolution of the basin. Characteristics of basin evolution can be studied by analyzing the basin filling succession. Two major periods are recognized according to the filling succession and subsequent alteration of the Xihulitu Basin. Evolutionary characteristics of each stage of the basin formation and alteration have been discussed in details. The types and special distribution of uranium metallization are controlled by the scale, connection degree and distribution of sandstone units and impermeable mudstone beds. The environment of uranium ore-formation became favorable as the faults modified the hydrodynamic condition. The basin had been uplifted for a long time after it was filled. Intergranular pores are not destroyed due to the weak mechanical compaction, which is beneficial to groundwater penetrating. Montmorillonitization and zeolitization in some sandstone units are strong because of the high content of volcanic fragments. The major uranium metallization is the phreatic oxidation type. The northern zone of the second sub-basin in the central section of the basin is regarded as the first perspective target for subsequent exploration. (authors)

Side-by-side comparison of gene-based smallpox vaccine with MVA in nonhuman primates.

Science.gov (United States)

Golden, Joseph W; Josleyn, Matthew; Mucker, Eric M; Hung, Chien-Fu; Loudon, Peter T; Wu, T C; Hooper, Jay W

2012-01-01

Orthopoxviruses remain a threat as biological weapons and zoonoses. The licensed live-virus vaccine is associated with serious health risks, making its general usage unacceptable. Attenuated vaccines are being developed as alternatives, the most advanced of which is modified-vaccinia virus Ankara (MVA). We previously developed a gene-based vaccine, termed 4pox, which targets four orthopoxvirus antigens, A33, B5, A27 and L1. This vaccine protects mice and non-human primates from lethal orthopoxvirus disease. Here, we investigated the capacity of the molecular adjuvants GM-CSF and Escherichia coli heat-labile enterotoxin (LT) to enhance the efficacy of the 4pox gene-based vaccine. Both adjuvants significantly increased protective antibody responses in mice. We directly compared the 4pox plus LT vaccine against MVA in a monkeypox virus (MPXV) nonhuman primate (NHP) challenge model. NHPs were vaccinated twice with MVA by intramuscular injection or the 4pox/LT vaccine delivered using a disposable gene gun device. As a positive control, one NHP was vaccinated with ACAM2000. NHPs vaccinated with each vaccine developed anti-orthopoxvirus antibody responses, including those against the 4pox antigens. After MPXV intravenous challenge, all control NHPs developed severe disease, while the ACAM2000 vaccinated animal was well protected. All NHPs vaccinated with MVA were protected from lethality, but three of five developed severe disease and all animals shed virus. All five NHPs vaccinated with 4pox/LT survived and only one developed severe disease. None of the 4pox/LT-vaccinated animals shed virus. Our findings show, for the first time, that a subunit orthopoxvirus vaccine delivered by the same schedule can provide a degree of protection at least as high as that of MVA.

Side-by-side comparison of gene-based smallpox vaccine with MVA in nonhuman primates.

Directory of Open Access Journals (Sweden)

Joseph W Golden

Full Text Available Orthopoxviruses remain a threat as biological weapons and zoonoses. The licensed live-virus vaccine is associated with serious health risks, making its general usage unacceptable. Attenuated vaccines are being developed as alternatives, the most advanced of which is modified-vaccinia virus Ankara (MVA. We previously developed a gene-based vaccine, termed 4pox, which targets four orthopoxvirus antigens, A33, B5, A27 and L1. This vaccine protects mice and non-human primates from lethal orthopoxvirus disease. Here, we investigated the capacity of the molecular adjuvants GM-CSF and Escherichia coli heat-labile enterotoxin (LT to enhance the efficacy of the 4pox gene-based vaccine. Both adjuvants significantly increased protective antibody responses in mice. We directly compared the 4pox plus LT vaccine against MVA in a monkeypox virus (MPXV nonhuman primate (NHP challenge model. NHPs were vaccinated twice with MVA by intramuscular injection or the 4pox/LT vaccine delivered using a disposable gene gun device. As a positive control, one NHP was vaccinated with ACAM2000. NHPs vaccinated with each vaccine developed anti-orthopoxvirus antibody responses, including those against the 4pox antigens. After MPXV intravenous challenge, all control NHPs developed severe disease, while the ACAM2000 vaccinated animal was well protected. All NHPs vaccinated with MVA were protected from lethality, but three of five developed severe disease and all animals shed virus. All five NHPs vaccinated with 4pox/LT survived and only one developed severe disease. None of the 4pox/LT-vaccinated animals shed virus. Our findings show, for the first time, that a subunit orthopoxvirus vaccine delivered by the same schedule can provide a degree of protection at least as high as that of MVA.

The Interior Columbia Basin Ecosystem Management Project: scientific assessment.

Science.gov (United States)

1999-01-01

This CD-ROM contains digital versions (PDF) of the major scientific documents prepared for the Interior Columbia Basin Ecosystem Management Project (ICBEMP). "A Framework for Ecosystem Management in the Interior Columbia Basin and Portions of the Klamath and Great Basins" describes a general planning model for ecosystem management. The "Highlighted...

Efficient production of infectious viruses requires enzymatic activity of Epstein-Barr virus protein kinase.

Science.gov (United States)

Murata, Takayuki; Isomura, Hiroki; Yamashita, Yoriko; Toyama, Shigenori; Sato, Yoshitaka; Nakayama, Sanae; Kudoh, Ayumi; Iwahori, Satoko; Kanda, Teru; Tsurumi, Tatsuya

2009-06-20

The Epstein-Barr virus (EBV) BGLF4 gene product is the only protein kinase encoded by the virus genome. In order to elucidate its physiological roles in viral productive replication, we here established a BGLF4-knockout mutant and a revertant virus. While the levels of viral DNA replication of the deficient mutant were equivalent to those of the wild-type and the revertant, virus production was significantly impaired. Expression of the BGLF4 protein in trans fully complemented the low yield of the mutant virus, while expression of a kinase-dead (K102I) form of the protein failed to restore the virus titer. These results demonstrate that BGLF4 plays a significant role in production of infectious viruses and that the kinase activity is crucial.

Propagation Effect of a Virus Outbreak on a Network with Limited Anti-Virus Ability.

Directory of Open Access Journals (Sweden)

Yonghong Xu

Full Text Available This paper describes a new computer virus spreading model which takes into account the possibility of a virus outbreak on a network with limited anti-virus ability. Then, the model is investigated for the existence of equilibria and their stabilities are proved and illustrated. Moreover, it is found that these two factors are not only relative to the threshold value determining whether the virus becomes extinct or not, but that they are also relative to the virus epidemic levels. Theoretical and experimental results indicate that, in some ways, it would be practically possible to eradicate the virus or suppress its prevalence below a suitable level. Consequently, some suggestions are proposed that may help eradicate or suppress virus propagation over a real computer network.

An introduction to computer viruses

Energy Technology Data Exchange (ETDEWEB)

Brown, D.R.

1992-03-01

This report on computer viruses is based upon a thesis written for the Master of Science degree in Computer Science from the University of Tennessee in December 1989 by David R. Brown. This thesis is entitled An Analysis of Computer Virus Construction, Proliferation, and Control and is available through the University of Tennessee Library. This paper contains an overview of the computer virus arena that can help the reader to evaluate the threat that computer viruses pose. The extent of this threat can only be determined by evaluating many different factors. These factors include the relative ease with which a computer virus can be written, the motivation involved in writing a computer virus, the damage and overhead incurred by infected systems, and the legal implications of computer viruses, among others. Based upon the research, the development of a computer virus seems to require more persistence than technical expertise. This is a frightening proclamation to the computing community. The education of computer professionals to the dangers that viruses pose to the welfare of the computing industry as a whole is stressed as a means of inhibiting the current proliferation of computer virus programs. Recommendations are made to assist computer users in preventing infection by computer viruses. These recommendations support solid general computer security practices as a means of combating computer viruses.

Viruses infecting marine molluscs.

Science.gov (United States)

Arzul, Isabelle; Corbeil, Serge; Morga, Benjamin; Renault, Tristan

2017-07-01

Although a wide range of viruses have been reported in marine molluscs, most of these reports rely on ultrastructural examination and few of these viruses have been fully characterized. The lack of marine mollusc cell lines restricts virus isolation capacities and subsequent characterization works. Our current knowledge is mostly restricted to viruses affecting farmed species such as oysters Crassostrea gigas, abalone Haliotis diversicolor supertexta or the scallop Chlamys farreri. Molecular approaches which are needed to identify virus affiliation have been carried out for a small number of viruses, most of them belonging to the Herpesviridae and birnaviridae families. These last years, the use of New Generation Sequencing approach has allowed increasing the number of sequenced viral genomes and has improved our capacity to investigate the diversity of viruses infecting marine molluscs. This new information has in turn allowed designing more efficient diagnostic tools. Moreover, the development of experimental infection protocols has answered some questions regarding the pathogenesis of these viruses and their interactions with their hosts. Control and management of viral diseases in molluscs mostly involve active surveillance, implementation of effective bio security measures and development of breeding programs. However factors triggering pathogen development and the life cycle and status of the viruses outside their mollusc hosts still need further investigations. Copyright © 2017 Elsevier Inc. All rights reserved.

Hot, deep origin of petroleum: deep basin evidence and application

Science.gov (United States)

Price, Leigh C.

1978-01-01

Use of the model of a hot deep origin of oil places rigid constraints on the migration and entrapment of crude oil. Specifically, oil originating from depth migrates vertically up faults and is emplaced in traps at shallower depths. Review of petroleum-producing basins worldwide shows oil occurrence in these basins conforms to the restraints of and therefore supports the hypothesis. Most of the world's oil is found in the very deepest sedimentary basins, and production over or adjacent to the deep basin is cut by or directly updip from faults dipping into the basin deep. Generally the greater the fault throw the greater the reserves. Fault-block highs next to deep sedimentary troughs are the best target areas by the present concept. Traps along major basin-forming faults are quite prospective. The structural style of a basin governs the distribution, types, and amounts of hydrocarbons expected and hence the exploration strategy. Production in delta depocenters (Niger) is in structures cut by or updip from major growth faults, and structures not associated with such faults are barren. Production in block fault basins is on horsts next to deep sedimentary troughs (Sirte, North Sea). In basins whose sediment thickness, structure and geologic history are known to a moderate degree, the main oil occurrences can be specifically predicted by analysis of fault systems and possible hydrocarbon migration routes. Use of the concept permits the identification of significant targets which have either been downgraded or ignored in the past, such as production in or just updip from thrust belts, stratigraphic traps over the deep basin associated with major faulting, production over the basin deep, and regional stratigraphic trapping updip from established production along major fault zones.

Attractors and basins of dynamical systems

Directory of Open Access Journals (Sweden)

Attila Dénes

2011-03-01

Full Text Available There are several programs for studying dynamical systems, but none of them is very useful for investigating basins and attractors of higher dimensional systems. Our goal in this paper is to show a new algorithm for finding even chaotic attractors and their basins for these systems. We present an implementation and examples for the use of this program.

Coinfection with Epstein–Barr Virus (EBV), Human Papilloma Virus (HPV) and Polyoma BK Virus (BKPyV) in Laryngeal, Oropharyngeal and Oral Cavity Cancer

OpenAIRE

Drop, Bartłomiej; Strycharz-Dudziak, Małgorzata; Kliszczewska, Ewa; Polz-Dacewicz, Małgorzata

2017-01-01

Most research providing evidence for the role of oncogenic viruses in head and neck squamous cell carcinoma (SCC) development is focused on one type of virus without analyzing possible interactions between two or more types of viruses. The aim of this study was to analyse the prevalence of co-infection with human papillomavirus (HPV), Epstein–Barr virus (EBV) and polyoma BK virus (BKPyV) in oral, oropharyngeal and laryngeal squamous cell carcinomas in Polish patients. The correlations between...

Laboratory Evaluation of Underwater Grouting of CPP-603 Basins

International Nuclear Information System (INIS)

Johnson, V.J.; Pao, J.H.; Demmer, R.L.; Tripp, J.L.

2002-01-01

A project is underway to deactivate a Fuel Storage Basin. The project specifies the requirements and identifies the tasks that will be performed for deactivation of the CPP- 603 building at the Idaho Nuclear Technology and Engineering Center of the Idaho National Engineering and Environmental Laboratory. The Fuel Receiving and Storage Building (CPP- 603) was originally used to receive and store spent nuclear fuel from various facilities. The area to undergo deactivation includes the three spent nuclear fuel storage basins and a transfer canal (1.5 million gallons of water storage). Deactivation operations at the task site include management of the hot storage boxes and generic fuel objects, removal of the fuel storage racks, basin sludge, water evaporation and basin grouting, and interior equipment, tanks, and associated components. This includes a study to develop a grout formulation and placement process for this deactivation project. Water will be allowed to passively evaporate to r educe the spread of contamination from the walls of the basin. The basins will be filled with grout, underwater, as the water evaporates to maintain the basin water at a safe level. The objective of the deactivation project is to eliminate potential exposure to hazardous and radioactive materials and eliminate potential safety hazards associated with the CPP-603 building

Seismic stratigraphy and regional unconformity analysis of Chukchi Sea Basins

Science.gov (United States)

Agasheva, Mariia; Karpov, Yury; Stoupakova, Antonina; Suslova, Anna

2017-04-01

Russian Chukchi Sea Shelf one of petroleum potential province and still one of the most uninvestigated area. North and Sough Chukchi Trough that separated by Wrangel-Hearld Arch have different origin. The main challenge is stratigraphic sequences determination that filled North and South Chukchi basins. The joint tectonic evolution of the territory as Canada basin opening and Brooks Range-Wrangel Herald orogenic events enable to expect the analogous stratigraphy sequences in Russian Part. Analysis of 2D seismic data of Russian and American Chukchi Sea represent the major seismic reflectance that traced throughout the basins. Referring to this data North Chukchi basin includes four seismic stratigraphic sequences - Franklian (pre-Mississippian), Ellesmirian (Upper Devonian-Jurassic), Beaufortian (Jurassic-Lower Cretaceous) and Brookian (Lower Cretaceous-Cenozoic), as it is in North Slope Alaska [1]. South Chukchi basin has different tectonic nature, representing only Franclian basement and Brookian sequences. Sedimentary cover of North Chukchi basins starts with Ellesmirian sequence it is marked by bright reflector that separates from chaotic folded Franklian sequence. Lower Ellesmirian sequence fills of grabens that formed during upper Devonian rifting. Devonian extension event was initiated as a result of Post-Caledonian orogenic collapse, terminating with the opening of Arctic oceans. Beaufortian sequence is distinguished in Colville basin and Hanna Trough by seismically defined clinoforms. Paleozoic and Mesozoic strata are eroded by regional Lower Cretaceous Unconformity (LCU) linked with Canada basin opening. LCU is defined at seismic by angular unconformity, tracing at most arctic basins. Lower Cretaceous erosion and uplift event are of Hauterivian to Aptian age in Brooks Range and the Loppa High uplift refer to the early Barremian. The Lower Cretaceous clinoform complex downlaps to LCU horizon and filling North Chukchi basin (as in Colville basin Alska

Paleohydrogeology of the San Joaquin basin, California

Science.gov (United States)

Wilson, A.M.; Garven, G.; Boles, J.R.

1999-01-01

Mass transport can have a significant effect on chemical diagenetic processes in sedimentary basins. This paper presents results from the first part of a study that was designed to explore the role of an evolving hydrodynamic system in driving mass transport and chemical diagenesis, using the San Joaquin basin of California as a field area. We use coupled hydrogeologic models to establish the paleohydrogeology, thermal history, and behavior of nonreactive solutes in the basin. These models rely on extensive geological information and account for variable-density fluid flow, heat transport, solute transport, tectonic uplift, sediment compaction, and clay dehydration. In our numerical simulations, tectonic uplift and ocean regression led to large-scale changes in fluid flow and composition by strengthening topography-driven fluid flow and allowing deep influx of fresh ground water in the San Joaquin basin. Sediment compaction due to rapid deposition created moderate overpressures, leading to upward flow from depth. The unusual distribution of salinity in the basin reflects influx of fresh ground water to depths of as much as 2 km and dilution of saline fluids by dehydration reactions at depths greater than ???2.5 km. Simulations projecting the future salinity of the basin show marine salinities persisting for more than 10 m.y. after ocean regression. Results also show a change from topography-to compaction-driven flow in the Stevens Sandstone at ca. 5 Ma that coincides with an observed change in the diagenetic sequence. Results of this investigation provide a framework for future hydrologic research exploring the link between fluid flow and diagenesis.

RNA viruses in the sea.

Science.gov (United States)

Lang, Andrew S; Rise, Matthew L; Culley, Alexander I; Steward, Grieg F

2009-03-01

Viruses are ubiquitous in the sea and appear to outnumber all other forms of marine life by at least an order of magnitude. Through selective infection, viruses influence nutrient cycling, community structure, and evolution in the ocean. Over the past 20 years we have learned a great deal about the diversity and ecology of the viruses that constitute the marine virioplankton, but until recently the emphasis has been on DNA viruses. Along with expanding knowledge about RNA viruses that infect important marine animals, recent isolations of RNA viruses that infect single-celled eukaryotes and molecular analyses of the RNA virioplankton have revealed that marine RNA viruses are novel, widespread, and genetically diverse. Discoveries in marine RNA virology are broadening our understanding of the biology, ecology, and evolution of viruses, and the epidemiology of viral diseases, but there is still much that we need to learn about the ecology and diversity of RNA viruses before we can fully appreciate their contributions to the dynamics of marine ecosystems. As a step toward making sense of how RNA viruses contribute to the extraordinary viral diversity in the sea, we summarize in this review what is currently known about RNA viruses that infect marine organisms.

Reverse genetics of measles virus and resulting multivalent recombinant vaccines: applications of recombinant measles viruses.

Science.gov (United States)

Billeter, M A; Naim, H Y; Udem, S A

2009-01-01

An overview is given on the development of technologies to allow reverse genetics of RNA viruses, i.e., the rescue of viruses from cDNA, with emphasis on nonsegmented negative-strand RNA viruses (Mononegavirales), as exemplified for measles virus (MV). Primarily, these technologies allowed site-directed mutagenesis, enabling important insights into a variety of aspects of the biology of these viruses. Concomitantly, foreign coding sequences were inserted to (a) allow localization of virus replication in vivo through marker gene expression, (b) develop candidate multivalent vaccines against measles and other pathogens, and (c) create candidate oncolytic viruses. The vector use of these viruses was experimentally encouraged by the pronounced genetic stability of the recombinants unexpected for RNA viruses, and by the high load of insertable genetic material, in excess of 6 kb. The known assets, such as the small genome size of the vector in comparison to DNA viruses proposed as vectors, the extensive clinical experience of attenuated MV as vaccine with a proven record of high safety and efficacy, and the low production cost per vaccination dose are thus favorably complemented.

Retrodeforming the Sivas Basin (Turkey): Structural style of the central Anatolian basins and their integration in the geodynamic framework of Eastern Anatolia

Science.gov (United States)

Legeay, Etienne; Ringenbach, Jean-Claude; Callot, Jean-Paul; Mohn, Geoffroy; Kavak, Kaan

2017-04-01

Anatolia is the result of the amalgamation of Gondwandian microcontinents against Eurasia active margin. These were originally separated by several Neotethyan oceanic domains consumed by north-dipping subductions. Prior to the continental collision, regional convergence resulted in an obduction event, from north to south in Campanian time, which led to the emplacement of ophiolite nappes and ophiolitic mélanges onto the Tauride passive margin. Several sedimentary basins subsequently developed above the former sutures zones recorded the long-lasting geological evolution of the Anatolian domain from Late Cretaceous to Present The Sivas Basin is all together the richest, the most studied and also most complex of the group of Tertiary basins. The Sivas Basin formed above the northern leading edge of the Tauride platform, the Kırşehir micro-continent, the edge of the Pontide arc and the related sutures. Its complex structure is that of a fold-and-thrust belt with syn-orogenic salt tectonics. After the obduction, the Sivas basin recorded a relative quiet tectonic phase from Maastrichtian to Paleocene with basinal pelagic sedimentation and carbonate platform emplacement on its southern edge. Then shortening resumed in the Early Eocene with the development of north-verging thrusts. It is recorded by a coarse clastic input, with conglomeratic deltas fans grading up to basinal turbidites until the Late Eocene. Then the basin is progressively isolated and becomes an isolated foreland in which a thick evaporite formation deposited. Oligocene to Miocene continental clastics deposition was then mainly controlled by halokinesis: minibasin, salt ridges and salt sheets development. A first canopy is attributed to the second pulse of contraction from Late-Oligocene to Middle Miocene. This second stage end with the formation of back-thrust within the Sivas Basin and southward as a passive roof above a pre-salt triangle zone. This study relies both on extensive fieldwork (4 Ph

Schmallenberg Virus

Indian Academy of Sciences (India)

IAS Admin

explore the potential of this infection crossing the species barrier and thereby .... The virus targets mainly the brain of the unborn animal resulting in neurological ... The virus is located in the blood of the adult infected animal or in the central ...

Surface-water resources of Polecat Creek basin, Oklahoma

Science.gov (United States)

Laine, L.L.

1956-01-01

A compilation of basic data on surface waters in Polecat Creek basin is presented on a monthly basis for Heyburn Reservoir and for Polecat Creek at Heyburn, Okla. Chemical analyses are shown for five sites in the basin. Correlation of runoff records with those for nearby basins indicates that the average annual runoff of the basin above gaging station at Heyburn is 325 acre-feet per square mile. Estimated duration curves of daily flow indicate that under natural conditions there would be no flow in Polecat Creek at Heyburn (drainage area, 129 square miles) about 16 percent of the time on an average, and that the flow would be less than 3 cubic feet per second half of the time. As there is no significant base flow in the basin, comparable low flows during dry-weather periods may be expected in other parts of the basin. During drought periods Heyburn Reservoir does not sustain a dependable low-water flow in Polecat Creek. Except for possible re-use of the small sewage effluent from city of Sapulpa, dependable supplies for additional water needs on the main stem will require development of supplemental storage. There has been no regular program for collection of chemical quality data in the basin, but miscellaneous analyses indicate a water of suitable quality for municipal and agricultural uses in Heyburn Reservoir and Polecat Creek near Heyburn. One recent chemical analysis indicates the possibility of a salt pollution problem in the Creek near Sapulpa. (available as photostat copy only)

A combination in-ovo vaccine for avian influenza virus and Newcastle disease virus.

Science.gov (United States)

Steel, John; Burmakina, Svetlana V; Thomas, Colleen; Spackman, Erica; García-Sastre, Adolfo; Swayne, David E; Palese, Peter

2008-01-24

The protection of poultry from H5N1 highly pathogenic avian influenza A (HPAI) and Newcastle disease virus (NDV) can be achieved through vaccination, as part of a broader disease control strategy. We have previously generated a recombinant influenza virus expressing, (i) an H5 hemagglutinin protein, modified by the removal of the polybasic cleavage peptide and (ii) the ectodomain of the NDV hemagglutinin-neuraminidase (HN) protein in the place of the ectodomain of influenza neuraminidase (Park MS, et al. Proc Natl Acad Sci USA 2006;103(21):8203-8). Here we show this virus is attenuated in primary normal human bronchial epithelial (NHBE) cell culture, and demonstrate protection of C57BL/6 mice from lethal challenge with an H5 HA-containing influenza virus through immunisation with the recombinant virus. In addition, in-ovo vaccination of 18-day-old embryonated chicken eggs provided 90% and 80% protection against highly stringent lethal challenge by NDV and H5N1 virus, respectively. We propose that this virus has potential as a safe in-ovo live, attenuated, bivalent avian influenza and Newcastle disease virus vaccine.

Evaluation of the suitability of a plant virus, pepper mild mottle virus, as a surrogate of human enteric viruses for assessment of the efficacy of coagulation-rapid sand filtration to remove those viruses.

Science.gov (United States)

Shirasaki, N; Matsushita, T; Matsui, Y; Yamashita, R

2018-02-01

Here, we evaluated the removal of three representative human enteric viruses - adenovirus (AdV) type 40, coxsackievirus (CV) B5, and hepatitis A virus (HAV) IB - and one surrogate of human caliciviruses - murine norovirus (MNV) type 1 - by coagulation-rapid sand filtration, using water samples from eight water sources for drinking water treatment plants in Japan. The removal ratios of a plant virus (pepper mild mottle virus; PMMoV) and two bacteriophages (MS2 and φX174) were compared with the removal ratios of human enteric viruses to assess the suitability of PMMoV, MS2, and φX174 as surrogates for human enteric viruses. The removal ratios of AdV, CV, HAV, and MNV, evaluated via the real-time polymerase chain reaction (PCR) method, were 0.8-2.5-log 10 when commercially available polyaluminum chloride (PACl, basicity 1.5) and virgin silica sand were used as the coagulant and filter medium, respectively. The type of coagulant affected the virus removal efficiency, but the age of silica sand used in the rapid sand filtration did not. Coagulation-rapid sand filtration with non-sulfated, high-basicity PACls (basicity 2.1 or 2.5) removed viruses more efficiently than the other aluminum-based coagulants. The removal ratios of MS2 were sometimes higher than those of the three human enteric viruses and MNV, whereas the removal ratios of φX174 tended to be smaller than those of the three human enteric viruses and MNV. In contrast, the removal ratios of PMMoV were similar to and strongly correlated with those of the three human enteric viruses and MNV. Thus, PMMoV appears to be a suitable surrogate for human enteric viruses for the assessment of the efficacy of coagulation-rapid sand filtration to remove viruses. Copyright © 2017 Elsevier Ltd. All rights reserved.

Origin of marginal basins of the NW Pacific and their plate tectonic reconstructions

Science.gov (United States)

Xu, Junyuan; Ben-Avraham, Zvi; Kelty, Tom; Yu, Ho-Shing

2014-03-01

Geometry of basins can indicate their tectonic origin whether they are small or large. The basins of Bohai Gulf, South China Sea, East China Sea, Japan Sea, Andaman Sea, Okhotsk Sea and Bering Sea have typical geometry of dextral pull-apart. The Java, Makassar, Celebes and Sulu Seas basins together with grabens in Borneo also comprise a local dextral, transform-margin type basin system similar to the central and southern parts of the Shanxi Basin in geometry. The overall configuration of the Philippine Sea resembles a typical sinistral transpressional "pop-up" structure. These marginal basins except the Philippine Sea basin generally have similar (or compatible) rift history in the Cenozoic, but there do be some differences in the rifting history between major basins or their sub-basins due to local differences in tectonic settings. Rifting kinematics of each of these marginal basins can be explained by dextral pull-apart or transtension. These marginal basins except the Philippine Sea basin constitute a gigantic linked, dextral pull-apart basin system.

An inactivated whole-virus porcine parvovirus vaccine protects pigs against disease but does not prevent virus shedding even after homologous virus challenge.

Science.gov (United States)

Foerster, Tessa; Streck, André Felipe; Speck, Stephanie; Selbitz, Hans-Joachim; Lindner, Thomas; Truyen, Uwe

2016-06-01

Inactivated whole-virus vaccines against porcine parvovirus (PPV) can prevent disease but not infection and virus shedding after heterologous virus challenge. Here, we showed that the same is true for a homologous challenge. Pregnant sows were vaccinated with an experimental inactivated vaccine based on PPV strain 27a. They were challenged on day 40 of gestation with the virulent porcine parvovirus PPV-27a from which the vaccine was prepared (homologous challenge). On day 90 of gestation, the fetuses from vaccinated sows were protected against disease, while the fetuses of the non-vaccinated sows (control group) exhibited signs of parvovirus disease. All gilts, whether vaccinated or not vaccinated, showed a boost of PPV-specific antibodies indicative of virus infection and replication. Low DNA copy numbers, but not infectious virus, could be demonstrated in nasal or rectal swabs of immunized sows, but high copy numbers of challenge virus DNA as well as infectious virus could both be demonstrated in non-vaccinated sows.

Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species.

Science.gov (United States)

Di Giallonardo, Francesca; Schlub, Timothy E; Shi, Mang; Holmes, Edward C

2017-04-15

Viruses use the cellular machinery of their hosts for replication. It has therefore been proposed that the nucleotide and dinucleotide compositions of viruses should match those of their host species. If this is upheld, it may then be possible to use dinucleotide composition to predict the true host species of viruses sampled in metagenomic surveys. However, it is also clear that different taxonomic groups of viruses tend to have distinctive patterns of dinucleotide composition that may be independent of host species. To determine the relative strength of the effect of host versus virus family in shaping dinucleotide composition, we performed a comparative analysis of 20 RNA virus families from 15 host groupings, spanning two animal phyla and more than 900 virus species. In particular, we determined the odds ratios for the 16 possible dinucleotides and performed a discriminant analysis to evaluate the capability of virus dinucleotide composition to predict the correct virus family or host taxon from which it was isolated. Notably, while 81% of the data analyzed here were predicted to the correct virus family, only 62% of these data were predicted to their correct subphylum/class host and a mere 32% to their correct mammalian order. Similarly, dinucleotide composition has a weak predictive power for different hosts within individual virus families. We therefore conclude that dinucleotide composition is generally uniform within a virus family but less well reflects that of its host species. This has obvious implications for attempts to accurately predict host species from virus genome sequences alone. IMPORTANCE Determining the processes that shape virus genomes is central to understanding virus evolution and emergence. One question of particular importance is why nucleotide and dinucleotide frequencies differ so markedly between viruses. In particular, it is currently unclear whether host species or virus family has the biggest impact on dinucleotide frequencies and

Reserves in western basins: Part 1, Greater Green River basin

Energy Technology Data Exchange (ETDEWEB)

1993-10-01

This study characterizes an extremely large gas resource located in low permeability, overpressured sandstone reservoirs located below 8,000 feet drill depth in the Greater Green River basin, Wyoming. Total in place resource is estimated at 1,968 Tcf. Via application of geologic, engineering and economic criteria, the portion of this resource potentially recoverable as reserves is estimated. Those volumes estimated include probable, possible and potential categories and total 33 Tcf as a mean estimate of recoverable gas for all plays considered in the basin. Five plays (formations) were included in this study and each was separately analyzed in terms of its overpressured, tight gas resource, established productive characteristics and future reserves potential based on a constant $2/Mcf wellhead gas price scenario. A scheme has been developed to break the overall resource estimate down into components that can be considered as differing technical and economic challenges that must be overcome in order to exploit such resources: in other words, to convert those resources to economically recoverable reserves. Total recoverable reserves estimates of 33 Tcf do not include the existing production from overpressured tight reservoirs in the basin. These have estimated ultimate recovery of approximately 1.6 Tcf, or a per well average recovery of 2.3 Bcf. Due to the fact that considerable pay thicknesses can be present, wells can be economic despite limited drainage areas. It is typical for significant bypassed gas to be present at inter-well locations because drainage areas are commonly less than regulatory well spacing requirements.

Monoclonal antibodies against plant viruses

International Nuclear Information System (INIS)

Sandler, E.; Dietzgen, R.G.

1984-01-01

Ever since antigenic properties of plant viruses were discovered antisera have been raised and used for plant virus diagnosis and for the analysis of virus structure as well. From the early qualitative diagnosis method of precipitating the virus in clarified sap of an infected plant and the first quantitative application of the precipitin test vast progress has been made with regard to the development of highly sensitive and highly quantitative methods for virus detection. Of equal importance was the improvement of methods for separating virus from host cell components since the specificity of antisera raised against a virus could be increased by using an antigen for immunization highly concentrated and largely freed from contaminating host substances. The introduction of the enzyme-linked immunosorbent assay (ELISA) into plant virology allows detection of virus in nanogram quantities. Still, the conventionally raised antisera, no matter how pure an antigen was used for immunization, are polyclonal. They contain products of thousands of different antibody-secreting plasma cell clones which can be directed against all antigenic determinants (epitopes) of the virus, but also against antigens of the host plant that may not have been entirely separated from the immunizing virus during the purification procedure. Even after cross adsorption of polyclonal antisera some residual heterogeneity can be expected to remain. Within these boundaries the information gained with polyclonal antisera on virus structure and on virus diagnosis has to be interpreted

Regionalization of the Upper Tana Basin of Kenya Using Stream ...

African Journals Online (AJOL)

Regionalization of the Upper Tana Basin of Kenya Using Stream Flow Records. ... river gauge stations in the basin using the empirical orthogonal function analysis ... the study basin to be grouped into four homogenous hydrological zones that ...

Zika Virus and Pregnancy

Science.gov (United States)

... Management Education & Events Advocacy For Patients About ACOG Zika Virus and Pregnancy Home For Patients Zika Virus and ... Patient Education Pamphlets - Spanish Share: PEV002, September 2016 Zika Virus and Pregnancy There are risks to your fetus ...

Zika Virus

Science.gov (United States)

... with facebook share with twitter share with linkedin Zika Virus Credit: NIAID A female Aedes mosquito. This type of mosquito can transmit Zika, ... transmitted to humans through the bite of infected Aedes aegypti mosquitoes. Zika virus can be transmitted from an infected pregnant woman ...

CHANDIPURA VIRUS

Indian Academy of Sciences (India)