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Sample records for basin monkeypox viruses

  1. Using Remote Sensing to Map the Risk of Human Monkeypox Virus in the Congo Basin

    OpenAIRE

    Fuller, Trevon; Thomassen, Henri A; Mulembakani, Prime M.; Johnston, Sara C.; Lloyd-Smith, James O.; Kisalu, Neville K.; Lutete, Timothee K.; Blumberg, Seth; Fair, Joseph N.; Wolfe, Nathan D.; Shongo, Robert L.; Formenty, Pierre; Meyer, Hermann; Wright, Linda L.; Muyembe, Jean-Jacques

    2010-01-01

    Although the incidence of human monkeypox has greatly increased in Central Africa over the last decade, resources for surveillance remain extremely limited. We conducted a geospatial analysis using existing data to better inform future surveillance efforts. Using active surveillance data collected between 2005 and 2007, we identified locations in Sankuru district, Democratic Republic of Congo (DRC) where there have been one or more cases of human monkeypox. To assess what taxa constitute the ...

  2. Using remote sensing to map the risk of human monkeypox virus in the Congo basin

    OpenAIRE

    Fuller, T.; Thomassen, HA; Mulembakani, PM; Johnston, SC; Lloyd-Smith, JO; Kisalu, NK; Lutete, TK; Blumberg, S.; Fair, JN; Wolfe, ND; Shongo, RL; Formenty, P.; Meyer, H.; Wright, LL; Muyembe, JJ

    2011-01-01

    Although the incidence of human monkeypox has greatly increased in Central Africa over the last decade, resources for surveillance remain extremely limited. We conducted a geospatial analysis using existing data to better inform future surveillance efforts. Using active surveillance data collected between 2005 and 2007, we identified locations in Sankuru district, Democratic Republic of Congo (DRC) where there have been one or more cases of human monkeypox. To assess what taxa constitute the ...

  3. Monkeypox

    Science.gov (United States)

    ... infection can be divided into two periods: the invasion period (0-5 days) characterized by fever, intense ... The differential diagnoses include usually smallpox, chickenpox, measles, bacterial skin infections, scabies, medicamentous allergies and syphilis. Monkeypox ...

  4. In vitro inhibition of monkeypox virus production and spread by Interferon-β

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    Johnston Sara C

    2012-01-01

    Full Text Available Abstract Background The Orthopoxvirus genus contains numerous virus species that are capable of causing disease in humans, including variola virus (the etiological agent of smallpox, monkeypox virus, cowpox virus, and vaccinia virus (the prototypical member of the genus. Monkeypox is a zoonotic disease that is endemic in the Democratic Republic of the Congo and is characterized by systemic lesion development and prominent lymphadenopathy. Like variola virus, monkeypox virus is a high priority pathogen for therapeutic development due to its potential to cause serious disease with significant health impacts after zoonotic, accidental, or deliberate introduction into a naïve population. Results The purpose of this study was to investigate the prophylactic and therapeutic potential of interferon-β (IFN-β for use against monkeypox virus. We found that treatment with human IFN-β results in a significant decrease in monkeypox virus production and spread in vitro. IFN-β substantially inhibited monkeypox virus when introduced 6-8 h post infection, revealing its potential for use as a therapeutic. IFN-β induced the expression of the antiviral protein MxA in infected cells, and constitutive expression of MxA was shown to inhibit monkeypox virus infection. Conclusions Our results demonstrate the successful inhibition of monkeypox virus using human IFN-β and suggest that IFN-β could potentially serve as a novel safe therapeutic for human monkeypox disease.

  5. Mapping monkeypox transmission risk through time and space in the Congo Basin

    Science.gov (United States)

    Nakazawa, Yoshinori J.; Lash, R. Ryan; Carroll, Darin S.; Damon, Inger K.; Karem, Kevin L.; Reynolds, Mary G.; Osorio, Jorge E.; Rocke, Tonie E.; Malekani, Jean; Muyembe, Jean-Jacques; Formenty, Pierre; Peterson, A. Townsend

    2013-01-01

    Monkeypox is a major public health concern in the Congo Basin area, with changing patterns of human case occurrences reported in recent years. Whether this trend results from better surveillance and detection methods, reduced proportions of vaccinated vs. non-vaccinated human populations, or changing environmental conditions remains unclear. Our objective is to examine potential correlations between environment and transmission of monkeypox events in the Congo Basin. We created ecological niche models based on human cases reported in the Congo Basin by the World Health Organization at the end of the smallpox eradication campaign, in relation to remotely-sensed Normalized Difference Vegetation Index datasets from the same time period. These models predicted independent spatial subsets of monkeypox occurrences with high confidence; models were then projected onto parallel environmental datasets for the 2000s to create present-day monkeypox suitability maps. Recent trends in human monkeypox infection are associated with broad environmental changes across the Congo Basin. Our results demonstrate that ecological niche models provide useful tools for identification of areas suitable for transmission, even for poorly-known diseases like monkeypox.

  6. Inhibition of Monkeypox virus replication by RNA interference

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    Jahrling Peter B

    2009-11-01

    Full Text Available Abstract The Orthopoxvirus genus of Poxviridae family is comprised of several human pathogens, including cowpox (CPXV, Vaccinia (VACV, monkeypox (MPV and Variola (VARV viruses. Species of this virus genus cause human diseases with various severities and outcome ranging from mild conditions to death in fulminating cases. Currently, vaccination is the only protective measure against infection with these viruses and no licensed antiviral drug therapy is available. In this study, we investigated the potential of RNA interference pathway (RNAi as a therapeutic approach for orthopox virus infections using MPV as a model. Based on genome-wide expression studies and bioinformatic analysis, we selected 12 viral genes and targeted them by small interference RNA (siRNA. Forty-eight siRNA constructs were developed and evaluated in vitro for their ability to inhibit viral replication. Two genes, each targeted with four different siRNA constructs in one pool, were limiting to viral replication. Seven siRNA constructs from these two pools, targeting either an essential gene for viral replication (A6R or an important gene in viral entry (E8L, inhibited viral replication in cell culture by 65-95% with no apparent cytotoxicity. Further analysis with wild-type and recombinant MPV expressing green fluorescence protein demonstrated that one of these constructs, siA6-a, was the most potent and inhibited viral replication for up to 7 days at a concentration of 10 nM. These results emphasis the essential role of A6R gene in viral replication, and demonstrate the potential of RNAi as a therapeutic approach for developing oligonucleotide-based drug therapy for MPV and other orthopox viruses.

  7. Antiviral treatment is more effective than smallpox vaccination upon lethal monkeypox virus infection

    Czech Academy of Sciences Publication Activity Database

    Stittelaar, K. J.; Neyts, J.; Naesens, L.; Amerongen van, G.; Lavieren van, R. F.; Holý, Antonín; De Clercq, E.; Niesters, H. G. M.; Fries, E.; Maas, Ch.; Mulder, P. G. H.; Zeijst van der, B. A. M.; Osterhaus, D. M. E.

    2006-01-01

    Roč. 439, č. 7077 (2006), s. 745-748. ISSN 0028-0836 Institutional research plan: CEZ:AV0Z40550506 Keywords : monkeypox virus * vaccination * HPMPC * HPMPO-DAPy Subject RIV: CC - Organic Chemistry Impact factor: 26.681, year: 2006

  8. 42 CFR 71.56 - African rodents and other animals that may carry the monkeypox virus.

    Science.gov (United States)

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false African rodents and other animals that may carry the monkeypox virus. 71.56 Section 71.56 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES QUARANTINE, INSPECTION, LICENSING FOREIGN QUARANTINE Importations § 71.56 African...

  9. A Phylogeographic Investigation of African Monkeypox

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    Yoshinori Nakazawa

    2015-04-01

    Full Text Available Monkeypox is a zoonotic disease caused by a virus member of the genus Orthopoxvirus and is endemic to Central and Western African countries. Previous work has identified two geographically disjuct clades of monkeypox virus based on the analysis of a few genomes coupled with epidemiological and clinical analyses; however, environmental and geographic causes of this differentiation have not been explored. Here, we expand previous phylogenetic studies by analyzing a larger set of monkeypox virus genomes originating throughout Sub-Saharan Africa to identify possible biogeographic barriers associated with genetic differentiation; and projected ecological niche models onto environmental conditions at three periods in the past to explore the potential role of climate oscillations in the evolution of the two primary clades. Analyses supported the separation of the Congo Basin and West Africa clades; the Congo Basin clade shows much shorter branches, which likely indicate a more recent diversification of isolates within this clade. The area between the Sanaga and Cross Rivers divides the two clades and the Dahomey Gap seems to have also served as a barrier within the West African clade. Contraction of areas with suitable environments for monkeypox virus during the Last Glacial Maximum, suggests that the Congo Basin clade of monkeypox virus experienced a severe bottleneck and has since expanded its geographic range.

  10. [Comparative study of variola virus and monkeypox virus interferon-gamma-binding].

    Science.gov (United States)

    Nepomniashchikh, T S; Lebedev, L R; Riazankin, I A; Pozdniakov, S G; Gileeva, I P; Shchelkunov, S N

    2005-01-01

    DNA fragments containing genes for coding IFN-gamma-binding proteins (IFNgammaBPs) of variola virus (VARV) and monkeypox virus (MPXV) were obtained from viral genomes using PCR. Isolated genes coding desired proteins were expressed in the insect Sf21 cells using baculovirus expression system. Secreted recombinant IFNgammaBPs were isolated from culture medium of infected Sf21 cells through affinity chromatography procedure. SDS-PAAG and Western blot analysis of culture medium of infected insect cells and preparations of purified recombinant IFNgammaBPs indicated that recombinant viral proteins were dimerized even in the absence of ligand (hIFNgamma) unlike their cell (eucaryotic) analogs. Biological activity of the recombinant IFNgammaBPs were studied in the test of protective effect inhibition of hIFNgamma on L68 cells infected with murine encephalomyocarditis virus. It was shown that recombinant IFNgammaBPs had dose-dependent IFNgamma-inhibiting activity. A possibility of the elaboration of new therapeutics for anti-hIFNgamma therapy on the base of IFNgammaBPs is discussed. PMID:16358743

  11. Comparison of monkeypox viruses pathogenesis in mice by in vivo imaging.

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    Jorge E Osorio

    Full Text Available Monkeypox viruses (MPXV cause human monkeypox, a zoonotic smallpox-like disease endemic to Africa, and are of worldwide public health and biodefense concern. Using viruses from the Congo (MPXV-2003-Congo-358 and West African (MPXV-2003-USA-044 clades, we constructed recombinant viruses that express the luciferase gene (MPXV-Congo/Luc+and MPXV-USA-Luc+ and compared their viral infection in mice by biophotonic imaging. BALB/c mice became infected by both MPXV clades, but they recovered and cleared the infection within 10 days post-infection (PI. However, infection in severe combined immune deficient (SCID BALB/c mice resulted in 100% lethality. Intraperitoneal (IP injection of both MPXV-Congo and MPXV-Congo/Luc+resulted in a systemic clinical disease and the same mean time-to-death at 9 (+/-0 days post-infection. Likewise, IP injection of SCID-BALB/c mice with MPXV-USA or the MPXV-USA-Luc+, resulted in similar disease but longer (P<0.05 mean time-to-death (11+/-0 days for both viruses compared to the Congo strains. Imaging studies in SCID mice showed luminescence in the abdomen within 24 hours PI with subsequent spread elsewhere. Animals infected with the MPXV-USA/Luc+had less intense luminescence in tissues than those inoculated with MPXV-Congo/Luc+, and systemic spread of the MPXV-USA/Luc+virus occurred approximately two days later than the MPXV-Congo/Luc+. The ovary was an important target for viral replication as evidenced by the high viral titers and immunohistochemistry. These studies demonstrate the suitability of a mouse model and biophotonic imaging to compare the disease progression and tissue tropism of MPX viruses.

  12. Comparison of monkeypox viruses pathogenesis in mice by in vivo imaging

    Science.gov (United States)

    Osorio, J.E.; Iams, K.P.; Meteyer, C.U.; Rocke, T.E.

    2009-01-01

    Monkeypox viruses (MPXV) cause human monkeypox, a zoonotic smallpox-like disease endemic to Africa, and are of worldwide public health and biodefense concern. Using viruses from the Congo (MPXV-2003-Congo-358) and West African (MPXV-2003-USA-044) clades, we constructed recombinant viruses that express the luciferase gene (MPXV-Congo/Luc+and MPXV-USA-Luc+) and compared their viral infection in mice by biophotonic imaging. BALB/c mice became infected by both MPXV clades, but they recovered and cleared the infection within 10 days post-infection (PI). However, infection in severe combined immune deficient (SCID) BALB/c mice resulted in 100% lethality. Intraperitoneal (IP) injection of both MPXV-Congo and MPXV-Congo/Luc+resulted in a systemic clinical disease and the same mean time-to-death at 9 (??0) days post-infection. Likewise, IP injection of SCID-BALB/c mice with MPXV-USA or the MPXV-USA-Luc+, resulted in similar disease but longer (Pmice showed luminescence in the abdomen within 24 hours PI with subsequent spread elsewhere. Animals infected with the MPXV-USA/Luc+had less intense luminescence in tissues than those inoculated with MPXV-Congo/Luc+, and systemic spread of the MPXV-USA/Luc+virus occurred approximately two days later than the MPXV-Congo/Luc+. The ovary was an important target for viral replication as evidenced by the high viral titers and immunohistochemistry. These studies demonstrate the suitability of a mouse model and biophotonic imaging to compare the disease progression and tissue tropism of MPX viruses.

  13. Monkeypox Virus Infection of Rhesus Macaques Induces Massive Expansion of Natural Killer Cells but Suppresses Natural Killer Cell Functions

    OpenAIRE

    Song, Haifeng; Josleyn, Nicole; Janosko, Krisztina; Skinner, Jeff; Reeves, R. Keith; Cohen, Melanie; Jett, Catherine; Johnson, Reed; Blaney, Joseph E.; Bollinger, Laura; Jennings, Gerald; Jahrling, Peter B

    2013-01-01

    Natural killer (NK) cells play critical roles in innate immunity and in bridging innate and adaptive immune responses against viral infection. However, the response of NK cells to monkeypox virus (MPXV) infection is not well characterized. In this intravenous challenge study of MPXV infection in rhesus macaques (Macaca mulatta), we analyzed blood and lymph node NK cell changes in absolute cell numbers, cell proliferation, chemokine receptor expression, and cellular functions. Our results show...

  14. Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus.

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    Kathleen H Rubins

    Full Text Available Poxviruses use an arsenal of molecular weapons to evade detection and disarm host immune responses. We used DNA microarrays to investigate the gene expression responses to infection by monkeypox virus (MPV, an emerging human pathogen, and Vaccinia virus (VAC, a widely used model and vaccine organism, in primary human macrophages, primary human fibroblasts and HeLa cells. Even as the overwhelmingly infected cells approached their demise, with extensive cytopathic changes, their gene expression programs appeared almost oblivious to poxvirus infection. Although killed (gamma-irradiated MPV potently induced a transcriptional program characteristic of the interferon response, no such response was observed during infection with either live MPV or VAC. Moreover, while the gene expression response of infected cells to stimulation with ionomycin plus phorbol 12-myristate 13-acetate (PMA, or poly (I-C was largely unimpaired by infection with MPV, a cluster of pro-inflammatory genes were a notable exception. Poly(I-C induction of genes involved in alerting the innate immune system to the infectious threat, including TNF-alpha, IL-1 alpha and beta, CCL5 and IL-6, were suppressed by infection with live MPV. Thus, MPV selectively inhibits expression of genes with critical roles in cell-signaling pathways that activate innate immune responses, as part of its strategy for stealthy infection.

  15. Treatment with the smallpox antiviral tecovirimat (ST-246) alone or in combination with ACAM2000 vaccination is effective as a postsymptomatic therapy for monkeypox virus infection.

    Science.gov (United States)

    Berhanu, Aklile; Prigge, Jonathan T; Silvera, Peter M; Honeychurch, Kady M; Hruby, Dennis E; Grosenbach, Douglas W

    2015-07-01

    The therapeutic efficacies of smallpox vaccine ACAM2000 and antiviral tecovirimat given alone or in combination starting on day 3 postinfection were compared in a cynomolgus macaque model of lethal monkeypox virus infection. Postexposure administration of ACAM2000 alone did not provide any protection against severe monkeypox disease or mortality. In contrast, postexposure treatment with tecovirimat alone or in combination with ACAM2000 provided full protection. Additionally, tecovirimat treatment delayed until day 4, 5, or 6 postinfection was 83% (days 4 and 5) or 50% (day 6) effective. PMID:25896687

  16. Ecological niche and geographic distribution of human monkeypox in Africa.

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    Rebecca S Levine

    Full Text Available Monkeypox virus, a zoonotic member of the genus Orthopoxviridae, can cause a severe, smallpox-like illness in humans. Monkeypox virus is thought to be endemic to forested areas of western and Central Africa. Considerably more is known about human monkeypox disease occurrence than about natural sylvatic cycles of this virus in non-human animal hosts. We use human monkeypox case data from Africa for 1970-2003 in an ecological niche modeling framework to construct predictive models of the ecological requirements and geographic distribution of monkeypox virus across West and Central Africa. Tests of internal predictive ability using different subsets of input data show the model to be highly robust and suggest that the distinct phylogenetic lineages of monkeypox in West Africa and Central Africa occupy similar ecological niches. High mean annual precipitation and low elevations were shown to be highly correlated with human monkeypox disease occurrence. The synthetic picture of the potential geographic distribution of human monkeypox in Africa resulting from this study should support ongoing epidemiologic and ecological studies, as well as help to guide public health intervention strategies to areas at highest risk for human monkeypox.

  17. Establishment of real-time PCR assays for detection of monkeypox virus%猴痘病毒荧光定量PCR检测方法的建立

    Institute of Scientific and Technical Information of China (English)

    朱娜; 陈国强; 张敬友; 范红结

    2009-01-01

    根据GenBank发表的猴痘病毒(AF380138)F3L基因全序列,设计并合成了引物和TaqMan、MGB探针,建立了F3L基因的荧光定量PCR检测方法.应用该方法可从人工合成的猴痘病毒F3L基因片段(48048~48 509 bp)扩增典型的"S"型曲线,25 μL反应体系检测灵敏度可达68拷贝,但不能从鸡痘、山羊痘等病毒中扩增出相应的扩增曲线.结论:本方法可快速、敏感、特异地检测猴痘病毒.%In this paper the primers and TaqMan, MGB probes were designed by using Primer Express 3. 0 software according to the entire F3L gene sequence of monkeypox virus in CenBank to develop a real-time PCR assay for rapid identification of monkeypox virus. A typical "S" curve can be got when the artifical F3L gene sequence was used as a target, and the detection limits were 6. 8 copies of target DNA per PCR vial. However, when the chickenpox, goalpox or any other virus were used as targets, a typical " S" curve can not be got. So this assay may represent a battery of tests in detection of monkeypox virus.

  18. Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped Virions

    Energy Technology Data Exchange (ETDEWEB)

    Manes, Nathan P.; Estep, Ryan D.; Mottaz, Heather M.; Moore, Ronald J.; Clauss, Therese RW; Monroe, Matthew E.; Du, Xiuxia; Adkins, Joshua N.; Wong, Scott; Smith, Richard D.

    2008-03-07

    Orthopoxviruses are the largest and most complex of the animal viruses. In response to the recent emergence of monkeypox in Africa and the threat of smallpox bioterrorism, virulent (monkeypox virus) and benign (vaccinia virus) orthopoxviruses were proteomically compared with the goal of identifying proteins required for pathogenesis. Orthopoxviruses were grown in HeLa cells to two different viral forms (intracellular mature virus and extracellular enveloped virus), purified by sucrose gradient ultracentrifugation, denatured using RapiGest™ surfactant, and digested with trypsin. Unfractionated samples and strong cation exchange HPLC fractions were analyzed by reversed-phase LC-MS/MS, and analyses of the MS/MS spectra using SEQUEST® and X! Tandem resulted in the identification of hundreds of monkeypox, vaccinia, and copurified host proteins. The unfractionated samples were additionally analyzed by LC-MS on an LTQ-Orbitrap™, and the accurate mass and elution time tag approach was used to perform quantitative comparisons. Possible pathophysiological roles of differentially expressed orthopoxvirus genes are discussed.

  19. Pathogen-host associations and predicted range shifts of human monkeypox in response to climate change in central Africa.

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    Henri A Thomassen

    Full Text Available Climate change is predicted to result in changes in the geographic ranges and local prevalence of infectious diseases, either through direct effects on the pathogen, or indirectly through range shifts in vector and reservoir species. To better understand the occurrence of monkeypox virus (MPXV, an emerging Orthopoxvirus in humans, under contemporary and future climate conditions, we used ecological niche modeling techniques in conjunction with climate and remote-sensing variables. We first created spatially explicit probability distributions of its candidate reservoir species in Africa's Congo Basin. Reservoir species distributions were subsequently used to model current and projected future distributions of human monkeypox (MPX. Results indicate that forest clearing and climate are significant driving factors of the transmission of MPX from wildlife to humans under current climate conditions. Models under contemporary climate conditions performed well, as indicated by high values for the area under the receiver operator curve (AUC, and tests on spatially randomly and non-randomly omitted test data. Future projections were made on IPCC 4(th Assessment climate change scenarios for 2050 and 2080, ranging from more conservative to more aggressive, and representing the potential variation within which range shifts can be expected to occur. Future projections showed range shifts into regions where MPX has not been recorded previously. Increased suitability for MPX was predicted in eastern Democratic Republic of Congo. Models developed here are useful for identifying areas where environmental conditions may become more suitable for human MPX; targeting candidate reservoir species for future screening efforts; and prioritizing regions for future MPX surveillance efforts.

  20. Spectrum of Infection and Risk Factors for Human Monkeypox, United States, 2003

    OpenAIRE

    Mary G. Reynolds; Davidson, Whitni B.; Curns, Aaron T.; Conover, Craig S.; Huhn, Gregory; Davis, Jeffrey P.; Wegner, Mark; Croft, Donita R.; Newman, Alexandra; Obiesie, Nkolika N.; Hansen, Gail R.; Hays, Patrick L.; Pontones, Pamela; Beard, Brad; Teclaw, Robert

    2007-01-01

    For the 2003 monkeypox virus (MPXV) outbreak in the United States, interhuman transmission was not documented and all case-patients were near or handled MPXV-infected prairie dogs. We initiated a case–control study to evaluate risk factors for animal-to-human MPXV transmission. Participants completed a questionnaire requesting exposure, clinical, and demographic information. Serum samples were obtained for analysis of immunoglobulin G (IgG) and IgM to orthopoxvirus. When data were adjusted fo...

  1. Development of a model describing virus removal process in an activated sludge basin

    Energy Technology Data Exchange (ETDEWEB)

    Kim, T.; Shiragami, N. Unno, H. [Tokyo Institute of Technology, Tokyo (Japan)

    1995-06-20

    The virus removal process from the liquid phase in an activated sludge basin possibly consists of physicochemical processes, such as adsorption onto sludge flocs, biological processes such as microbial predating and inactivation by virucidal components excreted by microbes. To describe properly the virus behavior in an activated sludge basin, a simple model is proposed based on the experimental data obtained using a poliovirus type 1. A three-compartments model, which include the virus in the liquid phase and in the peripheral and inner regions of sludge flocs is employed. By using the model, the Virus removal process was successfully simulated to highlight the implication of its distribution in the activated sludge basin. 17 refs., 8 figs.

  2. Epidemiology of viruses causing chronic hepatitis among populations from the Amazon Basin and related ecosystems

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    Echevarría José M.

    2003-01-01

    Full Text Available On the last twenty years, viral hepatitis has emerged as a serious problem in almost all the Amerindian communities studied in the Amazon Basin and in other Amazon-related ecological systems from the North and Center of South America. Studies performed on communities from Bolivia, Brazil, Colombia, Peru and Venezuela have shown a high endemicity of the hepatitis B virus (HBV infection all over the region, which is frequently associated to a high prevalence of infection by hepatitis D virus among the chronic HBV carriers. Circulation of both agents responds mainly to horizontal virus transmission during childhood through mechanisms that are not fully understood. By contrast, infection by hepatitis C virus (HCV, which is present in all the urban areas of South America, is still very uncommon among them. At the moment, there is not data enough to evaluate properly the true incidence that such endemicity may have on the health of the populations affected. Since viral transmission might be operated by mechanisms that could not be acting in other areas of the World, it seems essential to investigate such mechanisms and to prevent the introduction of HCV into these populations, which consequences for health could be very serious.

  3. Predictive Modeling of West Nile Virus Transmission Risk in the Mediterranean Basin: How Far from Landing?

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    Véronique Chevalier

    2013-12-01

    Full Text Available The impact on human and horse health of West Nile fever (WNF recently and dramatically increased in Europe and neighboring countries. Involving several mosquito and wild bird species, WNF epidemiology is complex. Despite the implementation of surveillance systems in several countries of concern, and due to a lack of knowledge, outbreak occurrence remains unpredictable. Statistical models may help identifying transmission risk factors. When spatialized, they provide tools to identify areas that are suitable for West Nile virus transmission. Mathematical models may be used to improve our understanding of epidemiological process involved, to evaluate the impact of environmental changes or test the efficiency of control measures. We propose a systematic literature review of publications aiming at modeling the processes involved in WNF transmission in the Mediterranean Basin. The relevance of the corresponding models as predictive tools for risk mapping, early warning and for the design of surveillance systems in a changing environment is analyzed.

  4. Monkeypox Virus Infections in Small Animal Models for Evaluation of Anti-Poxvirus Agents

    OpenAIRE

    Inger K Damon; Christina L Hutson

    2010-01-01

    An ideal animal model for the study of a human disease is one which utilizes a route of infection that mimics the natural transmission of the pathogen; the ability to obtain disease with an infectious dose equivalent to that causing disease in humans; as well having a disease course, morbidity and mortality similar to that seen with human disease. Additionally, the animal model should have a mode(s) of transmission that mimics human cases. The development of small animal models for the study ...

  5. A Multicenter, Open-label Study of CMX001 Treatment of Serious Diseases or Conditions Caused by dsDNA Viruses

    Science.gov (United States)

    2013-08-28

    Male or Female Patients With a Serious or Immediately Life-threatening; Disease or Condition Caused by CMV, ADV, HSV, VAVC, VARV or; Monkeypox Viruses(s) Who Have a Life Expectancy of ≥ 2 Weeks and for; Whom no Comparable or Satisfactory Alternative Therapy is Available

  6. Spatial and temporal dynamics of hepatitis B virus D genotype in Europe and the Mediterranean Basin.

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    Gianguglielmo Zehender

    Full Text Available Hepatitis B virus genotype D can be found in many parts of the world and is the most prevalent strain in south-eastern Europe, the Mediterranean Basin, the Middle East, and the Indian sub-continent. The epidemiological history of the D genotype and its subgenotypes is still obscure because of the scarcity of appropriate studies. We retrieved from public databases a total of 312 gene P sequences of HBV genotype D isolated in various countries throughout the world, and reconstructed the spatio-temporal evolutionary dynamics of the HBV-D epidemic using a bayesian framework.The phylogeographical analysis showed that India had the highest posterior probability of being the location of the tree root, whereas central Asia was the most probable location of the common ancestor of subgenotypes D1-D3. HBV-D5 (identified in native Indian populations diverged from the tree root earlier than D1-D3. The time of the most recent common ancestor (tMRCA of the tree root was 128 years ago, which suggests that the common ancestor of the currently circulating subgenotypes existed in the second half of the XIX century. The mean tMRCA of subgenotypes D1-D3 was between the 1940s and the 1950-60s. On the basis of our phylogeographic reconstruction, it seems that HBV-D reached the Mediterranean area in the middle of the XX century by means of at least two routes: the first pathway (mainly due to the spread of subgenotype D1 crossing the Middle East and reaching north Africa and the eastern Mediterranean, and the second pathway (closely associated with D2 that crossed the former Soviet Union and reached eastern Europe and the Mediterranean through Albania. We hypothesise that the main route of dispersion of genotype D was the unsafe use of injections and drug addiction.

  7. Circulation of a Meaban-like virus in yellow-legged gulls and seabird ticks in the western Mediterranean basin.

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    Audrey Arnal

    Full Text Available In recent years, a number of zoonotic flaviviruses have emerged worldwide, and wild birds serve as their major reservoirs. Epidemiological surveys of bird populations at various geographical scales can clarify key aspects of the eco-epidemiology of these viruses. In this study, we aimed at exploring the presence of flaviviruses in the western Mediterranean by sampling breeding populations of the yellow-legged gull (Larus michahellis, a widely distributed, anthropophilic, and abundant seabird species. For 3 years, we sampled eggs from 19 breeding colonies in Spain, France, Algeria, and Tunisia. First, ELISAs were used to determine if the eggs contained antibodies against flaviviruses. Second, neutralization assays were used to identify the specific flaviviruses present. Finally, for colonies in which ELISA-positive eggs had been found, chick serum samples and potential vectors, culicid mosquitoes and soft ticks (Ornithodoros maritimus, were collected and analyzed using serology and PCR, respectively. The prevalence of flavivirus-specific antibodies in eggs was highly spatially heterogeneous. In northeastern Spain, on the Medes Islands and in the nearby village of L'Escala, 56% of eggs had antibodies against the flavivirus envelope protein, but were negative for neutralizing antibodies against three common flaviviruses: West Nile, Usutu, and tick-borne encephalitis viruses. Furthermore, little evidence of past flavivirus exposure was obtained for the other colonies. A subset of the Ornithodoros ticks from Medes screened for flaviviral RNA tested positive for a virus whose NS5 gene was 95% similar to that of Meaban virus, a flavivirus previously isolated from ticks of Larus argentatus in western France. All ELISA-positive samples subsequently tested positive for Meaban virus neutralizing antibodies. This study shows that gulls in the western Mediterranean Basin are exposed to a tick-borne Meaban-like virus, which underscores the need of exploring

  8. Vegetable crops in the Mediterranean basin with an overview of virus resistance.

    Science.gov (United States)

    Pitrat, Michel

    2012-01-01

    The Mediterranean area (MA) produces about 12% of the world vegetables both for local consumption and for export. With an average consumption of 242 kg per person and per year (and almost 400 kg in Turkey), vegetables are an important part of the Mediterranean diet. Vegetables are cultivated using different cultivation techniques (for instance, open field or protected), and the importance of viruses varies greatly between these growing conditions. Breeding virus-resistant cultivars is a key component of an integrated pest management strategy. The origin and the diversity of the main vegetables are presented with the sources of virus resistance. The center of origin of most vegetables is not in the MA: for instance, tomato, potato, pepper, bean, squash and pumpkin, and sweetpotato have been introduced from the American continent. Very few original sources of resistance against viruses have been described in local landraces from the MA. PMID:22682164

  9. Amplification of 'variola virus-specific' sequences in German cowpox virus isolates.

    Science.gov (United States)

    Meyer, H; Neubauer, H; Pfeffer, M

    2002-02-01

    In 1995 a polymerase chain reaction (PCR) protocol describing the specific detection of variola virus, the causative agent of smallpox, was published by Knight and others. Virulent variola major strains could be differentiated from less virulent variola minor strains because of the distinct amplicon sizes. Here, we applied this PCR protocol to DNA from various orthopoxvirus isolates. There was no amplification with the orthopoxvirus species vaccinia, monkeypox, mousepox, or camelpox viruses. However, amplification was observed in six out of 15 cowpox virus strains investigated. The size of the amplicons corresponded exactly with the size described for variola minor strains and the nucleotide sequence identity accounted for 97%. Findings are discussed with respect to the evolution of orthopoxvirus species assuming that variola virus most probably stems from a rodent-transmitted cowpox virus-like progenitor. PMID:11911586

  10. Influenza A Viruses from Overwintering and Spring-Migrating Waterfowl in the Lake Erie Basin, United States.

    Science.gov (United States)

    Nolting, Jacqueline M; Fries, Anthony C; Gates, Robert J; Bowman, Andrew S; Slemons, Richard D

    2016-05-01

    Influenza A virus (IAV) surveillance in migratory waterfowl in the United States has primarily occurred during late summer and the autumn southern migration. Data concerning the presence and ecology of IAVs in waterfowl during winter and spring seasons in the U.S. northern latitudes have been limited, mainly due to limited access to waterfowl for sampling. The southwestern Lake Erie Basin is an important stopover site for waterfowl during migration periods, and over the past 28 years, 8.72% of waterfowl sampled in this geographic location have been positive for IAV recovery during summer and autumn (June-December). To gain a better understanding of influenza A viral dynamics in waterfowl populations during winter and spring migration (February through April), cloacal swabs were collected from overwintering and spring-migrating waterfowl in Ohio and Michigan in 2006, 2007, 2013, and 2014. A total of 740 cloacal swabs were collected and tested using virus isolation in embryonating chicken eggs, resulting in the recovery of 33 (4.5%) IAV isolates. The influenza A isolates were recovered from eight waterfowl species in the order Anseriformes. Antigenically, the IAV isolates represent 15 distinct hemagglutinin (HA) and neuraminidase (NA) combinations, with seven (21%) of the isolates reported as mixed infections based on antigenic HA subtyping, NA subtyping, or both. This effort demonstrates the presence of antigenically diverse IAV in waterfowl during overwintering and spring migration at northern latitudes in the United States, thereby contributing to the understanding of the maintenance of diversity among waterfowl-origin IAVs. PMID:27309062

  11. Gene : CBRC-PABE-05-0024 [SEVENS

    Lifescience Database Archive (English)

    Full Text Available 69 [Monkeypox virus] 2e-25 44% MLYILYIVYTCYIFYISYIHMLYILYVVYTYVIYSICRIYICYIFYMSYIHMLYILYVVYTYVIYSICRIYICYIFY...MSYIHMLYILYVVYTYVIYLYVVYMLYILYVVYTCYIFYMSYIHVIYSICRIYMLYILYVVYTCYIFYMSYIHVIYSICRIYICYISICRIYICYISICRIYICYISICRIYICYISIC

  12. Co-administration of the broad-spectrum antiviral, brincidofovir (CMX001), with smallpox vaccine does not compromise vaccine protection in mice challenged with ectromelia virus.

    Science.gov (United States)

    Parker, Scott; Crump, Ryan; Foster, Scott; Hartzler, Hollyce; Hembrador, Ed; Lanier, E Randall; Painter, George; Schriewer, Jill; Trost, Lawrence C; Buller, R Mark

    2014-11-01

    Natural orthopoxvirus outbreaks such as vaccinia, cowpox, cattlepox and buffalopox continue to cause morbidity in the human population. Monkeypox virus remains a significant agent of morbidity and mortality in Africa. Furthermore, monkeypox virus's broad host-range and expanding environs make it of particular concern as an emerging human pathogen. Monkeypox virus and variola virus (the etiological agent of smallpox) are both potential agents of bioterrorism. The first line response to orthopoxvirus disease is through vaccination with first-generation and second-generation vaccines, such as Dryvax and ACAM2000. Although these vaccines provide excellent protection, their widespread use is impeded by the high level of adverse events associated with vaccination using live, attenuated virus. It is possible that vaccines could be used in combination with antiviral drugs to reduce the incidence and severity of vaccine-associated adverse events, or as a preventive in individuals with uncertain exposure status or contraindication to vaccination. We have used the intranasal mousepox (ectromelia) model to evaluate the efficacy of vaccination with Dryvax or ACAM2000 in conjunction with treatment using the broad spectrum antiviral, brincidofovir (BCV, CMX001). We found that co-treatment with BCV reduced the severity of vaccination-associated lesion development. Although the immune response to vaccination was quantifiably attenuated, vaccination combined with BCV treatment did not alter the development of full protective immunity, even when administered two days following ectromelia challenge. Studies with a non-replicating vaccine, ACAM3000 (MVA), confirmed that BCV's mechanism of attenuating the immune response following vaccination with live virus was, as expected, by limiting viral replication and not through inhibition of the immune system. These studies suggest that, in the setting of post-exposure prophylaxis, co-administration of BCV with vaccination should be considered

  13. Ectromelia Virus Infections of Mice as a Model to Support the Licensure of Anti-Orthopoxvirus Therapeutics

    Directory of Open Access Journals (Sweden)

    R. Mark Buller

    2010-09-01

    Full Text Available The absence of herd immunity to orthopoxviruses and the concern that variola or monkeypox viruses could be used for bioterroristic activities has stimulated the development of therapeutics and safer prophylactics. One major limitation in this process is the lack of accessible human orthopoxvirus infections for clinical efficacy trials; however, drug licensure can be based on orthopoxvirus animal challenge models as described in the “Animal Efficacy Rule”. One such challenge model uses ectromelia virus, an orthopoxvirus, whose natural host is the mouse and is the etiological agent of mousepox. The genetic similarity of ectromelia virus to variola and monkeypox viruses, the common features of the resulting disease, and the convenience of the mouse as a laboratory animal underscores its utility in the study of orthopoxvirus pathogenesis and in the development of therapeutics and prophylactics. In this review we outline how mousepox has been used as a model for smallpox. We also discuss mousepox in the context of mouse strain, route of infection, infectious dose, disease progression, and recovery from infection.

  14. Efficacy of CMX001 as a Prophylactic and Presymptomatic Antiviral Agent in New Zealand White Rabbits Infected with Rabbitpox Virus, a Model for Orthopoxvirus Infections of Humans

    Directory of Open Access Journals (Sweden)

    Richard W. Moyer

    2011-01-01

    Full Text Available CMX001, a lipophilic nucleotide analog formed by covalently linking 3‑(hexdecyloxypropan-1-ol to cidofovir (CDV, is being developed as a treatment for smallpox. CMX001 has dramatically increased potency versus CDV against all dsDNA viruses and, in contrast to CDV, is orally available and has shown no evidence of nephrotoxicity in healthy volunteers or severely ill transplant patients to date. Although smallpox has been eliminated from the environment, treatments are urgently being sought due to the risk of smallpox being used as a bioterrorism agent and for monkeypox virus, a zoonotic disease of Africa, and adverse reactions to smallpox virus vaccinations. In the absence of human cases of smallpox, new treatments must be tested for efficacy in animal models. Here we first review and discuss the rabbitpox virus (RPV infection of New Zealand White rabbits as a model for smallpox to test the efficacy of CMX001 as a prophylactic and early disease antiviral. Our results should also be applicable to monkeypox virus infections and for treatment of adverse reactions to smallpox vaccination.

  15. A Multiplex PCR/LDR Assay for the Simultaneous Identification of Category A Infectious Pathogens: Agents of Viral Hemorrhagic Fever and Variola Virus.

    Directory of Open Access Journals (Sweden)

    Sanchita Das

    Full Text Available CDC designated category A infectious agents pose a major risk to national security and require special action for public health preparedness. They include viruses that cause viral hemorrhagic fever (VHF syndrome as well as variola virus, the agent of smallpox. VHF is characterized by hemorrhage and fever with multi-organ failure leading to high morbidity and mortality. Smallpox, a prior scourge, has been eradicated for decades, making it a particularly serious threat if released nefariously in the essentially non-immune world population. Early detection of the causative agents, and the ability to distinguish them from other pathogens, is essential to contain outbreaks, implement proper control measures, and prevent morbidity and mortality. We have developed a multiplex detection assay that uses several species-specific PCR primers to generate amplicons from multiple pathogens; these are then targeted in a ligase detection reaction (LDR. The resultant fluorescently-labeled ligation products are detected on a universal array enabling simultaneous identification of the pathogens. The assay was evaluated on 32 different isolates associated with VHF (ebolavirus, marburgvirus, Crimean Congo hemorrhagic fever virus, Lassa fever virus, Rift Valley fever virus, Dengue virus, and Yellow fever virus as well as variola virus and vaccinia virus (the agent of smallpox and its vaccine strain, respectively. The assay was able to detect all viruses tested, including 8 sequences representative of different variola virus strains from the CDC repository. It does not cross react with other emerging zoonoses such as monkeypox virus or cowpox virus, or six flaviviruses tested (St. Louis encephalitis virus, Murray Valley encephalitis virus, Powassan virus, Tick-borne encephalitis virus, West Nile virus and Japanese encephalitis virus.

  16. Heartland Virus

    Science.gov (United States)

    ... Vector-Borne Diseases (DVBD) NCEZID Share Compartir Heartland virus On this Page What is Heartland virus? How ... Do I Need to Know? What is Heartland virus? Heartland virus belongs to a family of viruses ...

  17. Tuber symptoms associated with tobacco ratle virus infections

    Science.gov (United States)

    Tobacco rattle virus (TRV) is a soil-borne pathogen that is transmitted by stubby root nematodes. In the Columbia Basin of Washington and Oregon the only nematode positively shown to transmit the virus is Paratrichodorus allius. When the virus is transmitted to young tubers by the nematode, variou...

  18. Use of Vaccinia Virus Smallpox Vaccine in Laboratory and Health Care Personnel at Risk for Occupational Exposure to Orthopoxviruses - Recommendations of the Advisory Committee on Immunization Practices (ACIP), 2015.

    Science.gov (United States)

    Petersen, Brett W; Harms, Tiara J; Reynolds, Mary G; Harrison, Lee H

    2016-01-01

    On June 25, 2015, the Advisory Committee on Immunization Practices (ACIP) recommended routine vaccination with live smallpox (vaccinia) vaccine (ACAM2000) for laboratory personnel who directly handle 1) cultures or 2) animals contaminated or infected with replication-competent vaccinia virus, recombinant vaccinia viruses derived from replication-competent vaccinia strains (i.e., those that are capable of causing clinical infection and producing infectious virus in humans), or other orthopoxviruses that infect humans (e.g., monkeypox, cowpox, and variola) (recommendation category: A, evidence type 2 [Box]). Health care personnel (e.g., physicians and nurses) who currently treat or anticipate treating patients with vaccinia virus infections and whose contact with replication-competent vaccinia viruses is limited to contaminated materials (e.g., dressings) and persons administering ACAM2000 smallpox vaccine who adhere to appropriate infection prevention measures can be offered vaccination with ACAM2000 (recommendation category: B, evidence type 2 [Box]). These revised recommendations update the previous ACIP recommendations for nonemergency use of vaccinia virus smallpox vaccine for laboratory and health care personnel at risk for occupational exposure to orthopoxviruses (1). Since 2001, when the previous ACIP recommendations were developed, ACAM2000 has replaced Dryvax as the only smallpox vaccine licensed by the U.S. Food and Drug Administration (FDA) and available for use in the United States (2). These recommendations contain information on ACAM2000 and its use in laboratory and health care personnel at risk for occupational exposure to orthopoxviruses. PMID:26985679

  19. ECHO virus

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/001340.htm ECHO virus To use the sharing features on this page, please enable JavaScript. Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that lead to ...

  20. Vinna Basin

    Czech Academy of Sciences Publication Activity Database

    Honěk, J.; Franců, J.; Mikuláš, Radek; Pešek, J.; Sýkorová, Ivana; Tomanová-Petrová, P.

    Prague: Czech Geological Survey, 2014, s. 223-241 ISBN 978-80-7075-862-5 R&D Projects: GA ČR GA105/06/0653 Institutional support: RVO:67985891 ; RVO:67985831 Keywords : Tertiary basins * Czech Republic * Cenomanian and Tertiary lignite * geology * stratigraphy Subject RIV: DB - Geology ; Mineralogy

  1. Chikungunya Virus

    Science.gov (United States)

    ... Gaines, PhD, MPH, MA, CHES Differentiating Chikungunya From Dengue: A Clinical Challenge For Travelers CDC Travelers' Health Chikungunya Virus Home Prevention Transmission Symptoms & Treatment Geographic Distribution Chikungunya virus in ...

  2. Zika Virus

    Science.gov (United States)

    Zika is a virus that is spread mostly by mosquitoes. A pregnant mother can pass it to ... through blood transfusions. There have been outbreaks of Zika virus in the United States, Africa, Southeast Asia, ...

  3. Chikungunya virus

    Science.gov (United States)

    Chikungunya virus infection; Chikungunya ... Where Chikungunya is found Before 2013, the virus was found in Africa, Asia, Europe, and the Indian and Pacific oceans. In late 2013, outbreaks occurred for the first time in the ...

  4. ECHO virus

    Science.gov (United States)

    Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that lead to gastrointestinal infection and skin rashes. ... Echovirus is one of several families of viruses that affect the ... are common. In the United States, they are most common in ...

  5. Zika Virus

    Science.gov (United States)

    ... Zika Virus | See Q&A —June 21, 2016 Zika Virus Protein Could Be Vaccine Target —May 19, 2016 Research Conducted and Supported by the National Institutes of Health (NIH) in Addressing Zika Virus Disease. Testimony before the House Democratic Steering ...

  6. USE OF GEOSTATISTICS TO PREDICT VIRUS DECAY RATES FOR DETERMINATION OF SEPTIC TANK SETBACK DISTANCES

    Science.gov (United States)

    Water samples were collected from 71 public drinking-water supply wells in the Tucson, Arizona, basin. Virus decay rates in the water samples were determined with MS-2 coliphage as a model virus. The correlations between the virus decay rates and the sample locations were shown b...

  7. Epidemiology of viruses causing chronic hepatitis among populations from the Amazon Basin and related ecosystems Epidemiología de las hepatitis crónicas con carácter vírico en las comunidades indígenas de la cuenca amazónica y de otros ecosistemas similares

    Directory of Open Access Journals (Sweden)

    José M. Echevarría

    2003-12-01

    Full Text Available On the last twenty years, viral hepatitis has emerged as a serious problem in almost all the Amerindian communities studied in the Amazon Basin and in other Amazon-related ecological systems from the North and Center of South America. Studies performed on communities from Bolivia, Brazil, Colombia, Peru and Venezuela have shown a high endemicity of the hepatitis B virus (HBV infection all over the region, which is frequently associated to a high prevalence of infection by hepatitis D virus among the chronic HBV carriers. Circulation of both agents responds mainly to horizontal virus transmission during childhood through mechanisms that are not fully understood. By contrast, infection by hepatitis C virus (HCV, which is present in all the urban areas of South America, is still very uncommon among them. At the moment, there is not data enough to evaluate properly the true incidence that such endemicity may have on the health of the populations affected. Since viral transmission might be operated by mechanisms that could not be acting in other areas of the World, it seems essential to investigate such mechanisms and to prevent the introduction of HCV into these populations, which consequences for health could be very serious.A lo largo de los últimos veinte años, las hepatitis víricas se han revelado como un importante problema para las comunidades indígenas de la cuenca amazónica y de otros ecosistemas similares del norte y centro de Sudamérica. Los estudios realizados en comunidades de Bolivia, Brasil, Colombia, Perú y Venezuela han demostrado una alta propensión endémica para la infección por el virus de la hepatitis B, que se asocia con frecuencia a una elevada prevalencia de coinfección con el virus de la hepatitis D entre los portadores crónicos. La circulación de ambos agentes responde a su transmisión horizontal durante la infancia, a través de mecanismos aún poco conocidos. Por el contrario, la infección por el virus de la

  8. Computer Virus

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Computer viruses are small software programs that are designed to spread from one computerto another and to interfere with computer operation.A virus might delete data on your computer,use your e-mail program to spread itself to othercomputers,or even erase everything on your hard disk.Viruses are most easily spread by attach-ments in e-mail messages or instant messaging messages.That is why it is essential that you never

  9. Fate of human viruses in groundwater recharge systems

    Energy Technology Data Exchange (ETDEWEB)

    Vaughn, J.M.; Landry, E.F.

    1980-03-01

    The overall objective of this research program was to determine the ability of a well-managed tertiary effluent-recharge system to return virologically acceptable water to the groundwater aquifer. The study assessed the quality of waters renovated by indigenous recharge operations and investigated a number of virus-soil interrelationships. The elucidation of the interactions led to the establishment of basin operating criteria for optimizing virus removal. Raw influents, chlorinated tertiary effluents, and renovated wastewater from the aquifer directly beneath a uniquely designed recharge test basin were assayed on a weekly basis for the presence of human enteroviruses and coliform bacteria. High concentrations of viruses were routinely isolated from influents but were isolated only on four occasions from tertiary-treated sewage effluents. In spite of the high quality effluent being recharged, viruses were isolated from the groundwater observation well, indicating their ability to penetrate the unsaturated zone. Results of poliovirus seeding experiments carried out in the test basin clearly indicated the need to operate recharge basins at low (e.g. 1 cm/h) infiltration rates in areas having soil types similar to those found at the study site. The method selected for reducing the test basin infiltration rate involved clogging the basin surface with settled organic material from highly turbid effluent. Alternative methods for slowing infiltration rates are discussed in the text.

  10. Computer viruses

    Science.gov (United States)

    Denning, Peter J.

    1988-01-01

    The worm, Trojan horse, bacterium, and virus are destructive programs that attack information stored in a computer's memory. Virus programs, which propagate by incorporating copies of themselves into other programs, are a growing menace in the late-1980s world of unprotected, networked workstations and personal computers. Limited immunity is offered by memory protection hardware, digitally authenticated object programs,and antibody programs that kill specific viruses. Additional immunity can be gained from the practice of digital hygiene, primarily the refusal to use software from untrusted sources. Full immunity requires attention in a social dimension, the accountability of programmers.

  11. Zika Virus.

    Science.gov (United States)

    Phillips, Jennan A; Neyland, Anavernyel

    2016-08-01

    Zika virus (ZIKV) infections are the latest global public health emergency. Occupational health nurses can protect society by educating workers, women of childbearing age, and others traveling in ZIKV-infected areas about prevention strategies. PMID:27411846

  12. Live Virus Smallpox Vaccine

    Science.gov (United States)

    ... A - Z Index SMALLPOX FACT SHEET The Live Virus Smallpox Vaccine The vaccinia virus is the "live ... it cannot cause smallpox. What is a "live virus" vaccine? A "live virus" vaccine is a vaccine ...

  13. Simple technique for in field samples collection in the cases of skin rash illness and subsequent PCR detection of orthopoxviruses and varicella zoster virus.

    Directory of Open Access Journals (Sweden)

    Catherine Dumont

    Full Text Available BACKGROUND: In case of outbreak of rash illness in remote areas, clinically discriminating monkeypox (MPX from severe form of chickenpox and from smallpox remains a concern for first responders. OBJECTIVE: The goal of the study was therefore to use MPX and chickenpox outbreaks in Democratic Republic of Congo (DRC as a test case for establishing a rapid and specific diagnosis in affected remote areas. METHODS: In 2008 and 2009, successive outbreaks of presumed MPX skin rash were reported in Bena Tshiadi, Yangala and Ndesha healthcare districts of the West Kasai province (DRC. Specimens consisting of liquid vesicle dried on filter papers or crusted scabs from healing patients were sampled by first responders. A field analytical facility was deployed nearby in order to carry out a real-time PCR (qPCR assay using genus consensus primers, consensus orthopoxvirus (OPV and smallpox-specific probes spanning over the 14 kD fusion protein encoding gene. A PCR-restriction fragment length polymorphism was used on-site as backup method to confirm the presence of monkeypox virus (MPXV in samples. To complete the differential diagnosis of skin rash, chickenpox was tested in parallel using a commercial qPCR assay. In a post-deployment step, a MPXV-specific pyrosequencing was carried out on all biotinylated amplicons generated on-site in order to confirm the on-site results. RESULTS: Whereas MPXV proved to be the agent causing the rash illness outbreak in the Bena Tshiadi, VZV was the causative agent of the disease in Yangala and Ndesha districts. In addition, each on-site result was later confirmed by MPXV-specific pyrosequencing analysis without any discrepancy. CONCLUSION: This experience of rapid on-site dual use DNA-based differential diagnosis of rash illnesses demonstrates the potential of combining tests specifically identifying bioterrorism agents and agents causing natural outbreaks. This opens the way to rapid on-site DNA-based identification of a

  14. Computer Viruses. Technology Update.

    Science.gov (United States)

    Ponder, Tim, Comp.; Ropog, Marty, Comp.; Keating, Joseph, Comp.

    This document provides general information on computer viruses, how to help protect a computer network from them, measures to take if a computer becomes infected. Highlights include the origins of computer viruses; virus contraction; a description of some common virus types (File Virus, Boot Sector/Partition Table Viruses, Trojan Horses, and…

  15. Ebola Virus

    Directory of Open Access Journals (Sweden)

    Anusha Rangare Lakshman

    2015-09-01

    Full Text Available The disease Ebola takes its name from the Ebola River situated near a village in the Democratic Republic of Congo, where the disease first appeared in 1976. It is caused by a virus from the Filoviridae family (filovirus. The present outbreak of Ebola Virus Disease (EVD concerns four countries in West Africa, namely Guinea, Liberia, Sierra Leone and Nigeria till date. Further to widespread transmission of the disease, it has been declared as a Public Health Emergency of International Concern by the World Health Organisation on 8 August 2014. As of 4 August 2014, countries have reported 1,711 cases (1,070 confirmed, 436 probable, 205 suspect, including 932 deaths. This review paper enlightens about the awareness of Ebola virus and its preventive measures. [Archives Medical Review Journal 2015; 24(3.000: 296-305

  16. Melo carboniferous basin

    International Nuclear Information System (INIS)

    This report is about of the Melo carboniferous basin which limits are: in the South the large and high Tupambae hill, in the west the Paraiso hill and the river mountains, in the North Yaguaron river basin to Candidata in Rio Grande del Sur in Brazil.

  17. K Basin safety analysis

    International Nuclear Information System (INIS)

    The purpose of this accident safety analysis is to document in detail, analyses whose results were reported in summary form in the K Basins Safety Analysis Report WHC-SD-SNF-SAR-001. The safety analysis addressed the potential for release of radioactive and non-radioactive hazardous material located in the K Basins and their supporting facilities. The safety analysis covers the hazards associated with normal K Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. After a review of the Criticality Safety Evaluation of the K Basin activities, the following postulated events were evaluated: Crane failure and casks dropped into loadout pit; Design basis earthquake; Hypothetical loss of basin water accident analysis; Combustion of uranium fuel following dryout; Crane failure and cask dropped onto floor of transfer area; Spent ion exchange shipment for burial; Hydrogen deflagration in ion exchange modules and filters; Release of Chlorine; Power availability and reliability; and Ashfall

  18. K Basin safety analysis

    Energy Technology Data Exchange (ETDEWEB)

    Porten, D.R.; Crowe, R.D.

    1994-12-16

    The purpose of this accident safety analysis is to document in detail, analyses whose results were reported in summary form in the K Basins Safety Analysis Report WHC-SD-SNF-SAR-001. The safety analysis addressed the potential for release of radioactive and non-radioactive hazardous material located in the K Basins and their supporting facilities. The safety analysis covers the hazards associated with normal K Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. After a review of the Criticality Safety Evaluation of the K Basin activities, the following postulated events were evaluated: Crane failure and casks dropped into loadout pit; Design basis earthquake; Hypothetical loss of basin water accident analysis; Combustion of uranium fuel following dryout; Crane failure and cask dropped onto floor of transfer area; Spent ion exchange shipment for burial; Hydrogen deflagration in ion exchange modules and filters; Release of Chlorine; Power availability and reliability; and Ashfall.

  19. Virus diseases of peas, beans, and faba bean in the Mediterranean region.

    Science.gov (United States)

    Makkouk, Khaled; Pappu, Hanu; Kumari, Safaa G

    2012-01-01

    In the Mediterranean region, pea, bean, and faba bean production is affected by around 17 major viruses. These viruses do not have the same ecology and consequently require a variety of different preventive measures to control them. Some of these viruses have a narrow host range, such as Faba bean necrotic yellows virus (FBNYV), and others, such as Alfalfa mosaic virus (AMV) and Cucumber mosaic virus (CMV), a very wide host range. Such features are important when identifying sources of virus inoculum in a region, and the vectors can transmit viruses from natural reservoirs to the crop plants. Some of these viruses are seed borne and, consequently, can be disseminated long distances through infected seeds. Crop losses caused by these viruses are variable, depending on the sensitivity and susceptibility of the crop to infection. Host resistance genes have been identified for some of these viruses, but in others, such as FBNYV, no resistance genes in faba bean have been identified yet. Significant progress was made in developing precise methods for the identification of these viruses, and new virus problems are being identified every year. This chapter is not intended to be a review for pea, bean, and faba bean viruses, but rather focuses on the major viruses which affect these crops in the Mediterranean basin with focus on the progress made over the past two decades. PMID:22682174

  20. Passatempo Virus, a Vaccinia Virus Strain, Brazil

    OpenAIRE

    Leite, Juliana A.; Drumond, Betânia P.; Trindade, Giliane S; Zélia I P Lobato; da Fonseca, Flávio G.; dos Santos, João R.; Madureira, Marieta C.; Guedes, Maria I.M.C.; Ferreira, Jaqueline M. S.; Bonjardim, Cláudio A.; Ferreira, Paulo C. P.; Kroon, Erna G.

    2005-01-01

    Passatempo virus was isolated during a zoonotic outbreak. Biologic features and molecular characterization of hemagglutinin, thymidine kinase, and vaccinia growth factor genes suggested a vaccinia virus infection, which strengthens the idea of the reemergence and circulation of vaccinia virus in Brazil. Molecular polymorphisms indicated that Passatempo virus is a different isolate.

  1. Wada basin boundaries and basin cells

    NARCIS (Netherlands)

    Nusse, H.E.; Yorke, J.A.

    1996-01-01

    In dynamical systems examples are common in which two or more attractors coexist, and in such cases the basin boundary is nonempty. We consider a two-dimensional diffeomorphism F (that is, F is an invertible map and both F and its inverse are differentiable with continuous derivatives), which has at

  2. Oropuche virus: A virus present but ignored

    Directory of Open Access Journals (Sweden)

    Salim Mattar V.

    2015-09-01

    Full Text Available Bunyaviruses are RNA viruses that affect animals and plants; they have five genera and four of them affect humans: Orthobunyavirus, Nairovirus, Phlebovirus and Hantavirus. All of them are Arbovirus, except Hantavirus. The Orthobunyaviruses comprise Oropouche, Tahyna, La Crosse virus, California encephalitis virus and Heartland virus recently discovered (1. Except for Heartland virus which is transmitted by ticks of the genus Amblyoma, these Phleboviruses have as vectors mosquitoes, which bite small mammals which are able to be as reservoirs amplifiers.

  3. Reserves in western basins

    Energy Technology Data Exchange (ETDEWEB)

    Caldwell, R.H.; Cotton, B.W. [Scotia Group, Dallas, TX (United States)

    1995-04-01

    The objective of this project is to investigate the reserves potential of tight gas reservoirs in three Rocky Mountain basins: the Greater Green River (GGRB), Uinta and Piceance basins. The basins contain vast gas resources that have been estimated in the thousands of Tcf hosted in low permeability clastic reservoirs. This study documents the productive characteristics of these tight reservoirs, requantifies gas in place resources, and characterizes the reserves potential of each basin. The purpose of this work is to promote understanding of the resource and to encourage its exploitation by private industry. At this point in time, the GGRB work has been completed and a final report published. Work is well underway in the Uinta and Piceance basins which are being handled concurrently, with reports on these basins being scheduled for the middle of this year. Since the GGRB portion of the project has been completed, this presentation win focus upon that basin. A key conclusion of this study was the subdivision of the resource, based upon economic and technological considerations, into groupings that have distinct properties with regard to potential for future producibility, economics and risk profile.

  4. Basin Hopping Graph

    DEFF Research Database (Denmark)

    Kucharik, Marcel; Hofacker, Ivo; Stadler, Peter;

    2014-01-01

    folding free energy landscape, however, can provide the relevant information. Results We introduce the basin hopping graph (BHG) as a novel coarse-grained model of folding landscapes. Each vertex of the BHG is a local minimum, which represents the corresponding basin in the landscape. Its edges connect...... basins when the direct transitions between them are “energetically favorable”. Edge weights endcode the corresponding saddle heights and thus measure the difficulties of these favorable transitions. BHGs can be approximated accurately and efficiently for RNA molecules well beyond the length range...

  5. Plant Virus Metagenomics: Advances in Virus Discovery.

    Science.gov (United States)

    Roossinck, Marilyn J; Martin, Darren P; Roumagnac, Philippe

    2015-06-01

    In recent years plant viruses have been detected from many environments, including domestic and wild plants and interfaces between these systems-aquatic sources, feces of various animals, and insects. A variety of methods have been employed to study plant virus biodiversity, including enrichment for virus-like particles or virus-specific RNA or DNA, or the extraction of total nucleic acids, followed by next-generation deep sequencing and bioinformatic analyses. All of the methods have some shortcomings, but taken together these studies reveal our surprising lack of knowledge about plant viruses and point to the need for more comprehensive studies. In addition, many new viruses have been discovered, with most virus infections in wild plants appearing asymptomatic, suggesting that virus disease may be a byproduct of domestication. For plant pathologists these studies are providing useful tools to detect viruses, and perhaps to predict future problems that could threaten cultivated plants. PMID:26056847

  6. Early Mesozoic basin aquifers

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This data set represents the extent of the Early Mesozoic basin aquifers in the states of Massachusettes, Connecticut, New York, New Jersey, Pennsylvania, Maryland,...

  7. Mitigation : Closed Basin Project

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The upcoming meeting on waterfowl mitigation for the Closed Basin Project will have several people talk about possible changes to the waterfowl mitigation program....

  8. Tulare Basin protection plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Tulare Basin Protection Plan has been initiated by The Nature Conservancy to elucidate the problems and opportunities of natural diversity protection....

  9. California Air Basins

    Data.gov (United States)

    California Department of Resources — Air ResourcesCalifornia Air Resources BoardThe following datasets are from the California Air Resources Board: * arb_california_airbasins - California Air BasinsThe...

  10. K Basin Hazard Analysis

    International Nuclear Information System (INIS)

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Final Safety Analysis Report. This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report

  11. K Basins Hazard Analysis

    International Nuclear Information System (INIS)

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Safety Analysis Report (HNF-SD-WM-SAR-062/Rev.4). This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report

  12. The Ebro river basin

    OpenAIRE

    Darbra Roman, Rosa Maria

    2011-01-01

    River basins worldwide are under pressure from economic activities. In Europe, the two main factors hindering the achievement of good chemical and ecological status of European river basins are pollution, mainly coming from agriculture, and hydromorphology (e.g. for navigation, hydroelectricity and flood control). The economic activities affect the chemical and ecological status of rivers, lakes and groundwater and deplete available soil, sediments and water resources. The w...

  13. Zika Virus.

    Science.gov (United States)

    Musso, Didier; Gubler, Duane J

    2016-07-01

    Zika virus (ZIKV) is an arthropod-borne virus (arbovirus) in the genus Flavivirus and the family Flaviviridae. ZIKV was first isolated from a nonhuman primate in 1947 and from mosquitoes in 1948 in Africa, and ZIKV infections in humans were sporadic for half a century before emerging in the Pacific and the Americas. ZIKV is usually transmitted by the bite of infected mosquitoes. The clinical presentation of Zika fever is nonspecific and can be misdiagnosed as other infectious diseases, especially those due to arboviruses such as dengue and chikungunya. ZIKV infection was associated with only mild illness prior to the large French Polynesian outbreak in 2013 and 2014, when severe neurological complications were reported, and the emergence in Brazil of a dramatic increase in severe congenital malformations (microcephaly) suspected to be associated with ZIKV. Laboratory diagnosis of Zika fever relies on virus isolation or detection of ZIKV-specific RNA. Serological diagnosis is complicated by cross-reactivity among members of the Flavivirus genus. The adaptation of ZIKV to an urban cycle involving humans and domestic mosquito vectors in tropical areas where dengue is endemic suggests that the incidence of ZIKV infections may be underestimated. There is a high potential for ZIKV emergence in urban centers in the tropics that are infested with competent mosquito vectors such as Aedes aegypti and Aedes albopictus. PMID:27029595

  14. Computer Viruses: An Overview.

    Science.gov (United States)

    Marmion, Dan

    1990-01-01

    Discusses the early history and current proliferation of computer viruses that occur on Macintosh and DOS personal computers, mentions virus detection programs, and offers suggestions for how libraries can protect themselves and their users from damage by computer viruses. (LRW)

  15. Viruses Infecting Reptiles

    OpenAIRE

    Marschang, Rachel E.

    2011-01-01

    A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The ...

  16. Oncogenic viruses and cancer

    Institute of Scientific and Technical Information of China (English)

    Guangxiang; George; Luo; Jing-hsiung; James; Ou

    2015-01-01

    <正>This special issue of the journal is dedicated to the important topic of oncogenic viruses and cancer.It contains seven review articles covering all known oncogenic viruses except for human T-lymphotropic virus type1(HTLV-1).These review articles are contributed by experts on specific viruses and their associated human cancers.Viruses account for about 20%of total human cancer cases.Although many viruses can cause various tumors in animals,only seven of them

  17. Virus Movement Maintains Local Virus Population Diversity

    Energy Technology Data Exchange (ETDEWEB)

    J. Snyder; B. Wiedenheft; M. Lavin; F. Roberto; J. Spuhler; A. Ortmann; T. Douglas; M. Young

    2007-11-01

    Viruses are the largest reservoir of genetic material on the planet, yet little is known about the population dynamics of any virus within its natural environment. Over a 2-year period, we monitored the diversity of two archaeal viruses found in hot springs within Yellowstone National Park (YNP). Both temporal phylogeny and neutral biodiversity models reveal that virus diversity in these local environments is not being maintained by mutation but rather by high rates of immigration from a globally distributed metacommunity. These results indicate that geographically isolated hot springs are readily able to exchange viruses. The importance of virus movement is supported by the detection of virus particles in air samples collected over YNP hot springs and by their detection in metacommunity sequencing projects conducted in the Sargasso Sea. Rapid rates of virus movement are not expected to be unique to these archaeal viruses but rather a common feature among virus metacommunities. The finding that virus immigration rather than mutation can dominate community structure has significant implications for understanding virus circulation and the role that viruses play in ecology and evolution by providing a reservoir of mobile genetic material.

  18. Susceptibility of various Japanese freshwater fish species to an isolate of viral haemorrhagic septicaemia virus (VHSV) genotype IVb

    DEFF Research Database (Denmark)

    Ito, Takafumi; Olesen, Niels Jørgen

    2013-01-01

    Genotype IVb of viral haemorrhagic septicaemia virus (VHSV) was isolated for the first time in the Great Lakes basin in 2003, where it spread and caused mass mortalities in several wild fish species throughout the basin. In order to prevent further spreading of the disease and to assess risks of...

  19. Small-Scale Trials Suggest Increasing Applications of Natular™ XRT and Natular™ T30 Larvicide Tablets May Not Improve Mosquito Reduction in Some Catch Basins

    OpenAIRE

    Harbison, Justin E; Marlon Henry; Corcoran, Peter C.; Dave Zazra; Christopher Xamplas

    2016-01-01

    Stormwater catch basins are commonly treated with larvicides by mosquito control agencies to reduce local populations of mosquito species capable of transmitting West Nile virus. Recent evidence suggests that extended-release larvicides formulated to last up to 180 days in catch basins may not be effective in some basins due to chronic flushing, rapid dissolution, or burying of treatment in sump debris. To investigate if increasing the number of applications could improve effectiveness, a sma...

  20. WiBasin: basin management through an integrated platform

    OpenAIRE

    Llort Pavon, Xavier; Sánchez-Diezma Guijarro, Rafael; Sancho, David; Rodríguez, Álvaro; Berenguer Ferrer, Marc; Sempere Torres, Daniel

    2014-01-01

    In this work we present WiBasin, a cloud platform for basin and dam management. It includes different sources of precipitation (both observed and forecasted), integration over the catchment domain (to provide an aggregated value of potential rainfall accumulated over the basin) , and a complete dissemination environment (web-viewer, capability of issuing hazard warnings with configurable thresholds, SMS, mails, etc.)

  1. Modifed Great Basin Extent (Buffered)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Two different great basin perimeter files were intersected and dissolved using ArcGIS 10.2.2 to create the outer perimeter of the great basin for use modeling...

  2. Reversing the indus basin closure

    OpenAIRE

    2011-01-01

    After independence, a swift and extensive development of Indus river basin has intensified commitment of water resources. During dry period, the indication of over commitment and basin closure are visible. In the beginning 2000s, he river basin water resources were committed to more than 99% without any environmental flows. The paper tries to unfold drivers closing the Indus basin and the scope for change. Defining and implementing water allocation mechanism to ascertain equity, sustainabilit...

  3. South Bohemian basins

    Czech Academy of Sciences Publication Activity Database

    Spudil, J.; Brož, B.; Dašková, Jiřina; Holcová, K.; Kvaček, Z.; Pešek, J.; Svobodová, Marcela; Sýkorová, Ivana; Teodoridis, V.

    Prague: Czech Geological Survey, 2014, s. 190-206 ISBN 978-80-7075-862-5 R&D Projects: GA ČR GA105/06/0653 Institutional support: RVO:67985891 ; RVO:67985831 Keywords : Tertiary basins * Czech Republic * Cenomanian and Tertiary lignite * geology * stratigraphy Subject RIV: DB - Geology ; Mineralogy

  4. Pasco Basin hydrometeorological study

    International Nuclear Information System (INIS)

    This report provides detailed precipitation and evapotranspiration distributions for the Pasco Basin for use in groundwater recharge calculations. The results are shown on precipitation and evapotranspiration distribution maps. The parameters, calculation methods, sensitivity determinations, and fitting methods used in the development of these maps are also discussed

  5. The Mediterranean basin

    DEFF Research Database (Denmark)

    Tomas, Carmen; Sanchez Sanchez, Juan Jose; Barbaro, A.;

    2008-01-01

    genetically from the rest of the populations in the Mediterranean area. This result supports the hypothesis of a low incidence of the south-north genetic interchange at the western shores of the Mediterranean basin. A low genetic distance was found between populations in the Middle East and the western part...

  6. Restoring the Nile Basin

    OpenAIRE

    World Bank Group

    2015-01-01

    Watershed management has come to be recognized as a critical issue in the Nile Basin. Upstream land use can cause degradation and soil erosion, resulting in lower agricultural yields locally and causing sedimentation downstream. The increased sediment load causes economic problems by reducing water quality, and irrigation and hydropower potential, as well as increasing flooding. This note ...

  7. Bransfield Basin and Cordilleran Orogenesis

    Science.gov (United States)

    Dalziel, I. W.; Austin, J. A.; Barker, D. H.; Christensen, G. L.

    2003-12-01

    Tectonic uplift of the Andean Cordillera was initiated in the mid-Cretaceous with inversion of a composite marginal basin along 7500 km of the continental margin of South America, from Peru to Tierra del Fuego and the North Scotia Ridge. In the southernmost Andes, from 50-56 degrees S, the quasi-oceanic floor of this basin is preserved in the obducted ophiolitic rocks of the Rocas Verdes (Green Rocks) basin. We suggest that the basin beneath Bransfield Strait, 61-64 degrees S, separating the South Shetland Islands from the Antarctic Peninsula, constitutes a modern analog for the Rocas Verdes basin. Marine geophysical studies of Bransfield basin have been undertaken over the past 12 years by the Institute for Geophysics, University of Texas at Austin, under the auspices of the Ocean Sciences Division and United States Antarctic Program, National Science Foundation. These studies have elucidated the structure and evolution of Bransfield basin for comparison with the Rocas Verdes basin, with a view to eventual forward modeling of the evolution of a hypothetical cordilleran orogen by compression and inversion of the basin. These are the processes that can be observed in the tectonic transformation of the Rocas Verdes basin into the southernmost Andean cordillera, as South America moved rapidly westward in an Atlantic-Indian ocean hot-spot reference frame during the mid-Cretaceous. Multi-channel reflection seismic data from the Bransfield basin reveal an asymmetric structural architecture characterized by steeply-dipping normal faults flanking the South Shetlands island arc and gently dipping listric normal faults along the Antarctic Peninsula margin. Normal fault polarity reversals appear to be related to distributed loci of magmatic activity within the basin. This architecture is remarkably similar to that deduced from field structural studies of the Rocas Verdes basin. Notably, the oceanward-dipping, low angle normal faults along the Antarctic Peninsula margin

  8. Viruses Infecting Reptiles

    Directory of Open Access Journals (Sweden)

    Rachel E. Marschang

    2011-11-01

    Full Text Available A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch’s postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

  9. Testing for Human Immunodeficiency Virus

    Science.gov (United States)

    ... education Fact Sheet PFS005: Testing for Human Immunodeficiency Virus AUGUST 2015 • Reasons for Getting Tested • Who Should ... For More Information • Glossary Testing for Human Immunodeficiency Virus Human immunodeficiency virus (HIV) is the virus that ...

  10. Analysis of Virus Algorithms

    Directory of Open Access Journals (Sweden)

    Jyoti Kalyani

    2006-01-01

    Full Text Available Security of wired and wireless networks is the most challengeable in today's computer world. The aim of this study was to give brief introduction about viruses and worms, their creators and characteristics of algorithms used by viruses. Here wired and wireless network viruses are elaborated. Also viruses are compared with human immune system. On the basis of this comparison four guidelines are given to detect viruses so that more secure systems are made. While concluding this study it is found that the security is most challengeable, thus it is required to make more secure models which automatically detect viruses and prevent the system from its affect.

  11. Hepatitis Delta Virus: A Peculiar Virus

    OpenAIRE

    Carolina Alves; Cristina Branco; Celso Cunha

    2013-01-01

    The hepatitis delta virus (HDV) is distributed worldwide and related to the most severe form of viral hepatitis. HDV is a satellite RNA virus dependent on hepatitis B surface antigens to assemble its envelope and thus form new virions and propagate infection. HDV has a small 1.7 Kb genome making it the smallest known human virus. This deceivingly simple virus has unique biological features and many aspects of its life cycle remain elusive. The present review endeavors to gather the available ...

  12. Petroleum exploration potential of Tamtsag Basin

    Institute of Scientific and Technical Information of China (English)

    SUN Guo-qing; GUO Qing-xia; ZHANG Ya-jin; ZHAO Hong-wen

    2004-01-01

    The Tamtsag Basin is located in the extreme eastern portion of the Mongolia. The Basin and its counterpart in China (the Hailar Basin) are united a whole basin on the structural setting. In recent years, the Tamtsag Basin attracts more and more attention with the important exploration discovered in the 19th block by SOCO and in Hailar Basin of China. This paper discusses the exploration potential of Tamtsag Basin from the viewpoint of petroleum geology.

  13. Virus Infection

    Directory of Open Access Journals (Sweden)

    Hiroshi Abe

    2013-01-01

    Full Text Available Of 168 patients with chronic hepatitis B virus (HBV infection-related liver disease, 20 patients who had received 100 mg of lamivudine plus 10 mg/day of adefovir dipivoxil (ADV (ADV group and 124 patients who had received 0.5 mg/day of entecavir or 100 mg/day of lamivudine (non-ADV group for >1 year were enrolled. For comparative analyses, 19 well-matched pairs were obtained from the groups by propensity scores. At the time of enrollment, serum creatinine and phosphate concentrations were similar between the ADV and non-ADV groups; however, urinary phosphate ( and serum bone-specific alkaline phosphatase (BAP ( concentrations were significantly higher in the ADV group than in the non-ADV group. Serum BAP was significantly higher at the time of enrollment than before ADV administration in the ADV group (, although there was no significant change in serum BAP concentration in the non-ADV group. There was a significant positive correlation between the period of ADV therapy and ΔBAP (, . Serum BAP concentration increased before increase in serum creatinine concentration and was useful for early detection of adverse events and for developing adequate measures for continuing ADV for chronic HBV infection-related liver disease.

  14. Canterbury Basin Sea Level

    OpenAIRE

    Fulthorpe, C. S.; Institute for Geophysics John A. and Katherine G. Jackson School of Geosciences The University of Texas at Austin J.J. Pickle Research Campus, Building 196 (ROC) 10100 Burnet Road (R2200) Austin TX 78758-4445 USA; Hoyanagi, K.; Department of Geology Faculty of Science Shinshu University 3-1-1 Asahi, Matsumoto 390-8621 Japan; Blum, P.; United States Implementing Organization Integrated Ocean Drilling Program Texas A&M University 1000 Discovery Drive College Station TX 77845 USA; Guèrin, G.; Borehole Research Group Lamont-Doherty Earth Observatory of Columbia University PO Box 1000, 61 Route 9W Palisades NY 10964 USA; Slagle, A. L.; Borehole Research Group Lamont-Doherty Earth Observatory of Columbia University PO Box 1000, 61 Route 9W Palisades NY 10964 USA; Blair, S. A.; Department of Geological Sciences Florida State University 006 Carraway Building Tallahassee FL 32306 USA; Browne, G. H.; Hydrocarbon Section GNS Science PO Box 30368 Lower Hutt New Zealand; Carter, R. M.; Marine Geophysical Laboratory James Cook University of North Queensland Townsville QLD 4811 Australia; Ciobanu, M.; Laboratoire de Microbiologie des Environnements Extrêmes CNRS UMR-6197 Institut Universitaire Européen de la Mer Technopole Brest-Iroise Plouzane 29280 France; Claypool, G. E.; Organic Geochemist 8910 West 2nd Avenue Lakewood CO 80226 USA; Crundwell, M. P.; New Zealand Observer/Paleontologist (foraminifers) Paleontology and Environmental Change Section GNS Science PO Box 30368 Lower Hutt New Zealand; Dinarès-Turell, J.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione Roma2, Roma, Italia; Ding, X.; School of Marine Sciences China University of Geosciences (Beijing) 29 XueYuan Road, Haidian District Beijing P.R. China; George, S. C.; Department of Earth and Planetary Sciences Macquarie University Sydney NSW 2109 Australia; Hepp, D. A.; MARUM – Center for Marine Environmental Sciences and Department of Geosciences University of Bremen Leobener Strasse MARUM Building, Room 2230 28359 Bremen Germany

    2010-01-01

    Integrated Ocean Drilling Program (IODP) Expedition 317 was devoted to understanding the relative importance of global sea level (eustasy) versus local tectonic and sedimentary processes in controlling continental margin sedimentary cycles. The expedition recovered sediments from the Eocene to recent period, with a particular focus on the sequence stratigraphy of the late Miocene to recent, when global sea level change was dominated by glacioeustasy. Drilling in the Canterbury Basin,...

  15. Hepatitis virus panel

    Science.gov (United States)

    The hepatitis virus panel is a series of blood tests used to detect current or past infection by hepatitis A , hepatitis ... samples for more than one kind of hepatitis virus at the same time. Antibody and antigen tests ...

  16. Human Parainfluenza Viruses

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Human Parainfluenza Viruses (HPIVs) Note: Javascript is disabled or ... CDC.gov . Recommend on Facebook Tweet Share Compartir Human parainfluenza viruses (HPIVs) commonly cause respiratory illnesses in ...

  17. Tumorigenic DNA viruses

    Energy Technology Data Exchange (ETDEWEB)

    Klein, G.

    1989-01-01

    The eighth volume of Advances in Viral Oncology focuses on the three major DNA virus groups with a postulated or proven tumorigenic potential: papillomaviruses, animal hepatitis viruses, and the Epstein-Bar virus. In the opening chapters, the contributors analyze the evidence that papillomaviruses and animal hepatitis viruses are involved in tumorigenesis and describe the mechanisms that trigger virus-host cell interactions. A detailed section on the Epstein-Barr virus (EBV) - comprising more than half the book - examines the transcription and mRNA processing patterns of the virus genome; the mechanisms by which EBV infects lymphoid and epithelial cells; the immunological aspects of the virus; the actions of EBV in hosts with Acquired Immune Deficiency Syndrome; and the involvement of EBV in the etiology of Burkitt's lymphoma.

  18. Viruses and Breast Cancer

    International Nuclear Information System (INIS)

    Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix

  19. Viruses and human cancer

    Energy Technology Data Exchange (ETDEWEB)

    Gallo, R.C.; Haseltine, W.; Klein, G.; Zur Hausen, H.

    1987-01-01

    This book contains papers on the following topics: Immunology and Epidemiology, Biology and Pathogenesis, Models of Pathogenesis and Treatment, Simian and Bovine Retroviruses, Human Papilloma Viruses, EBV and Herpesvirus, and Hepatitis B Virus.

  20. Herpes Simplex Virus (HSV)

    Science.gov (United States)

    ... rashes clinical tools newsletter | contact Share | Herpes Simplex Virus (HSV) A parent's guide to condition and treatment ... skin or mouth sores with the herpes simplex virus (HSV) is called primary herpes. This may be ...

  1. Hepatitis virus panel

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/003558.htm Hepatitis virus panel To use the sharing features on this page, please enable JavaScript. The hepatitis virus panel is a series of blood tests used ...

  2. Viruses and Breast Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Lawson, James S., E-mail: james.lawson@unsw.edu.au; Heng, Benjamin [School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney (Australia)

    2010-04-30

    Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix.

  3. Taming influenza viruses

    OpenAIRE

    Ozawa, Makoto; Kawaoka, Yoshihiro

    2011-01-01

    Plasmid-based reverse genetics systems allow the artificial generation of viruses with cloned cDNA-derived genomes. Since the establishment of such systems for influenza virus, numerous attempts have been made to tame this pathogenic agent. In particular, several types of viruses expressing foreign genes have been generated and used to further our knowledge of influenza virus replication and pathogenicity and to develop novel influenza vaccines. Here, we review these achievements and discuss ...

  4. Understanding Ebola Virus Transmission

    OpenAIRE

    Seth Judson; Joseph Prescott; Vincent Munster

    2015-01-01

    An unprecedented number of Ebola virus infections among healthcare workers and patients have raised questions about our understanding of Ebola virus transmission. Here, we explore different routes of Ebola virus transmission between people, summarizing the known epidemiological and experimental data. From this data, we expose important gaps in Ebola virus research pertinent to outbreak situations. We further propose experiments and methods of data collection that will enable scientists to fil...

  5. Hepatitis D Virus Replication.

    Science.gov (United States)

    Taylor, John M

    2015-11-01

    This work reviews specific related aspects of hepatitis delta virus (HDV) reproduction, including virion structure, the RNA genome, the mode of genome replication, the delta antigens, and the assembly of HDV using the envelope proteins of its helper virus, hepatitis B virus (HBV). These topics are considered with perspectives ranging from a history of discovery through to still-unsolved problems. HDV evolution, virus entry, and associated pathogenic potential and treatment of infections are considered in other articles in this collection. PMID:26525452

  6. Lifestyles of plant viruses

    OpenAIRE

    Roossinck, Marilyn J.

    2010-01-01

    The vast majority of well-characterized eukaryotic viruses are those that cause acute or chronic infections in humans and domestic plants and animals. However, asymptomatic persistent viruses have been described in animals, and are thought to be sources for emerging acute viruses. Although not previously described in these terms, there are also many viruses of plants that maintain a persistent lifestyle. They have been largely ignored because they do not generally cause disease. The persisten...

  7. Chikungunya virus, Cameroon, 2006

    OpenAIRE

    Peyrefitte, Christophe N.; Rousset, Dominique; Pastorino, Boris A.M.; Pouillot, Regis; Bessaud, Maël; Tock, Fabienne; Mansaray, Helene; Merle, Olivier L.; Pascual, Aurelie M.; Paupy, Christophe; Vessiere, Aurelia; Imbert, Patrice; Tchendjou, Patrice; Durand, Jean-Paul; Tolou, Hugues J.

    2007-01-01

    We report the isolation of chikungunya virus from a patient during an outbreak of a denguelike syndrome in Cameroon in 2006. The virus was phylogenetically grouped in the Democratic Republic of the Congo cluster, indicating a continuous circulation of a genetically similar chikungunya virus population during 6 years in Central Africa.

  8. Computer Virus Protection

    Science.gov (United States)

    Rajala, Judith B.

    2004-01-01

    A computer virus is a program--a piece of executable code--that has the unique ability to replicate. Like biological viruses, computer viruses can spread quickly and are often difficult to eradicate. They can attach themselves to just about any type of file, and are spread by replicating and being sent from one individual to another. Simply having…

  9. What's West Nile Virus?

    Science.gov (United States)

    ... Help White House Lunch Recipes What's West Nile Virus? KidsHealth > For Kids > What's West Nile Virus? Print A A A Text Size en español ¿Qué es el Virus del Nilo Occidental? What exactly is the West ...

  10. Respiratory Syncytial Virus

    Science.gov (United States)

    ... Things to Know About Zika & Pregnancy Respiratory Syncytial Virus KidsHealth > For Parents > Respiratory Syncytial Virus Print A A A Text Size What's in ... RSV When to Call the Doctor en español Virus respiratorio sincitial About RSV Respiratory syncytial (sin-SISH- ...

  11. BOVINE VIRAL DIARRHEA VIRUSES

    Science.gov (United States)

    Bovine viral diarrhea virus (BVDV) is an umbrella term for two species of viruses, BVDV1 and BVDV2, within the Pestivirus genus of the Flavivirus family. BVDV viruses are further subclassified as cytopathic and noncytopathic based on their activity in cultured epithelial cells. Noncytopathic BVDV p...

  12. Intracontinental basins and strong earthquakes

    Institute of Scientific and Technical Information of China (English)

    邓起东; 高孟潭; 赵新平; 吴建春

    2004-01-01

    The September 17, 1303 Hongtong M=8 earthquake occurred in Linfen basin of Shanxi down-faulted basin zone. It is the first recorded M=8 earthquake since the Chinese historical seismic records had started and is a great earthquake occurring in the active intracontinental basin. We had held a Meeting of the 700th Anniversary of the 1303 Hongtong M=8 Earthquake in Shanxi and a Symposium on Intracontinental Basins and Strong Earthquakes in Taiyuan City of Shanxi Province on September 17~18, 2003. The articles presented on the symposium discussed the relationships between active intracontinental basins of different properties, developed in different regions, including tensional graben and semi-graben basins in tensile tectonic regions, compression-depression basins and foreland basins in compressive tectonic regions and pull-apart basins in strike-slip tectonic zones, and strong earthquakes in China. In this article we make a brief summary of some problems. The articles published in this special issue are a part of the articles presented on the symposium.

  13. Multiple oscillatory modes of the Argentine Basin. Part II. The spectral origin of the basin modes

    NARCIS (Netherlands)

    Weijer, W.; Vevier, F.; Gille, S.T.; Dijkstra, H.A.

    2007-01-01

    In this paper the spectrum of barotropic basin modes of the Argentine Basin is shown to be connected to the classical Rossby basin modes of a flat-bottom (constant depth), rectangular basin. First, the spectrum of basin modes is calculated for the Argentine Basin, by performing a normal-mode analysi

  14. Understanding Ebola Virus Transmission

    Directory of Open Access Journals (Sweden)

    Seth Judson

    2015-02-01

    Full Text Available An unprecedented number of Ebola virus infections among healthcare workers and patients have raised questions about our understanding of Ebola virus transmission. Here, we explore different routes of Ebola virus transmission between people, summarizing the known epidemiological and experimental data. From this data, we expose important gaps in Ebola virus research pertinent to outbreak situations. We further propose experiments and methods of data collection that will enable scientists to fill these voids in our knowledge about the transmission of Ebola virus.

  15. Viruses of asparagus.

    Science.gov (United States)

    Tomassoli, Laura; Tiberini, Antonio; Vetten, Heinrich-Josef

    2012-01-01

    The current knowledge on viruses infecting asparagus (Asparagus officinalis) is reviewed. Over half a century, nine virus species belonging to the genera Ilarvirus, Cucumovirus, Nepovirus, Tobamovirus, Potexvirus, and Potyvirus have been found in this crop. The potyvirus Asparagus virus 1 (AV1) and the ilarvirus Asparagus virus 2 (AV2) are widespread and negatively affect the economic life of asparagus crops reducing yield and increasing the susceptibility to biotic and abiotic stress. The main properties and epidemiology of AV1 and AV2 as well as diagnostic techniques for their detection and identification are described. Minor viruses and control are briefly outlined. PMID:22682173

  16. Small-Scale Trials Suggest Increasing Applications of Natular™ XRT and Natular™ T30 Larvicide Tablets May Not Improve Mosquito Reduction in Some Catch Basins.

    Science.gov (United States)

    Harbison, Justin E; Henry, Marlon; Corcoran, Peter C; Zazra, Dave; Xamplas, Christopher

    2016-01-01

    Stormwater catch basins are commonly treated with larvicides by mosquito control agencies to reduce local populations of mosquito species capable of transmitting West Nile virus. Recent evidence suggests that extended-release larvicides formulated to last up to 180 days in catch basins may not be effective in some basins due to chronic flushing, rapid dissolution, or burying of treatment in sump debris. To investigate if increasing the number of applications could improve effectiveness, a small study was performed over 13 weeks in 2015 to evaluate two extended-release larvicides (Natular™ XRT 180-day tablets and Natular™ T30 30-day tablets) and a larvicide oil (CocoBear™). Over the course of 13 weeks, three groups of eight basins were monitored for mosquitoes, each group receiving Natular™ XRT, Natular™ T30, or CocoBear™ larvicides. All basins received a single application at the beginning of the study period. Once mosquitoes in a basin surpassed the treatment threshold during weekly monitoring, an additional application of the associated larvicide was given to that basin. The number of applications during the study period ranged from 1 to 10 for CocoBear™ basins, 1 to 7 for T30 basins, and 2 to 8 for XRT basins. Overall, the average number of applications and the cost of larvicide per basin were 4.4 applications at $0.66 per Coco-Bear™ basin, 4.4 applications at $6.26 per T30 basin, and 4 applications at $16.56 per XRT basin. Basins treated with XRT and T30 needed reapplications more often than expected, yet were no more effective than CocoBear™, suggesting that increasing the frequency of application of these larvicide formulations may not provide increased mosquito reduction in some basins. PMID:26792998

  17. Online identification of viruses.

    Science.gov (United States)

    Kolaskar, A S; Naik, P S

    2000-06-01

    A computerized animal virus information system is developed in the Sequence Retrieval System (SRS) format. This database is available on the Word Wide Web (WWW) at the site http://bioinfo.ernet.in/www/avis/avis++ +.html. The database has been used to generate large number of identification matrices for each family. The software is developed in C. Unix shell scripts and Hypertext Marked-up Language (HTML) to assign the family to an unknown virus deterministically and to identify the virus probabilistically. It has been shown that such web based virus identification approach provides results with high confidence in those cases where identification matrix uses large number of independent characters. Protein sequence data for animal viruses have been analyzed and oligopeptides specific to each virus family and also specific to each virus species are identified for several viruses. These peptides thus could be used to identify the virus and to assign the virus family with high confidence showing the usefulness of sequence data in virus identification. PMID:10917875

  18. Protoplasts and plant viruses

    International Nuclear Information System (INIS)

    The use of protoplasts in the study of plant viruses has attracted considerable attention since its inception in the late 1960s. This article is an attempt to assess the current status of protoplasts (primarily) and all cell cultures (in some instances) in studies of virus infection, virus replication, cytopathology, cross-protection, virus resistance, and the use of in vitro methods and genetic engineering to recover virus-resistant plants. These areas of study proved difficult to do entirely with whole plants or plant parts. However, because protoplasts could be synchronously infected with virus, they provided a valuable alternative means of following biochemical and cytological events in relation to the virus growth cycle in a more precise manner than previously possible

  19. Apollo Basin, Moon: Estimation of Impact Conditions

    Science.gov (United States)

    Echaurren, J. C.

    2015-07-01

    The Apollo Basin is a, pre-Nectarian, multi-ring basin located within the large South Pole-Aitken Basin (SPA). Multispectral data from both Galileo and Clementine showed that the composition of materials in Apollo is distinct…

  20. Advanced Chemistry Basins Model

    Energy Technology Data Exchange (ETDEWEB)

    Blanco, Mario; Cathles, Lawrence; Manhardt, Paul; Meulbroek, Peter; Tang, Yongchun

    2003-02-13

    The objective of this project is to: (1) Develop a database of additional and better maturity indicators for paleo-heat flow calibration; (2) Develop maturation models capable of predicting the chemical composition of hydrocarbons produced by a specific kerogen as a function of maturity, heating rate, etc.; assemble a compositional kinetic database of representative kerogens; (3) Develop a 4 phase equation of state-flash model that can define the physical properties (viscosity, density, etc.) of the products of kerogen maturation, and phase transitions that occur along secondary migration pathways; (4) Build a conventional basin model and incorporate new maturity indicators and data bases in a user-friendly way; (5) Develop an algorithm which combines the volume change and viscosities of the compositional maturation model to predict the chemistry of the hydrocarbons that will be expelled from the kerogen to the secondary migration pathways; (6) Develop an algorithm that predicts the flow of hydrocarbons along secondary migration pathways, accounts for mixing of miscible hydrocarbon components along the pathway, and calculates the phase fractionation that will occur as the hydrocarbons move upward down the geothermal and fluid pressure gradients in the basin; and (7) Integrate the above components into a functional model implemented on a PC or low cost workstation.

  1. Atlantic Basin refining profitability

    International Nuclear Information System (INIS)

    A review of the profitability margins of oil refining in the Atlantic Basin was presented. Petroleum refiners face the continuous challenge of balancing supply with demand. It would appear that the profitability margins in the Atlantic Basin will increase significantly in the near future because of shrinking supply surpluses. Refinery capacity utilization has reached higher levels than ever before. The American Petroleum Institute reported that in August 1997, U.S. refineries used 99 per cent of their capacity for several weeks in a row. U.S. gasoline inventories have also declined as the industry has focused on reducing capital costs. This is further evidence that supply and demand are tightly balanced. Some of the reasons for tightening supplies were reviewed. It was predicted that U.S. gasoline demand will continue to grow in the near future. Gasoline demand has not declined as expected because new vehicles are not any more fuel efficient today than they were a decade ago. Although federally-mandated fuel efficiency standards were designed to lower gasoline consumption, they may actually have prevented consumption from falling. Atlantic margins were predicted to continue moving up because of the supply and demand evidence: high capacity utilization rates, low operating inventories, limited capacity addition resulting from lower capital spending, continued U.S. gasoline demand growth, and steady total oil demand growth. 11 figs

  2. RNA Viruses Infecting Pest Insects

    Science.gov (United States)

    RNA viruses are viruses whose genetic material is ribonucleic acid (RNA). RNA viruses may be double or single-stranded based on the type of RNA they contain. Single-stranded RNA viruses can be further grouped into negative sense or positive-sense viruses according to the polarity of their RNA. Fur...

  3. Constructing computer virus phylogenies

    Energy Technology Data Exchange (ETDEWEB)

    Goldberg, L.A. [Warwick Univ., Coventry (United Kingdom) Dept. of Computer Science; Goldberg, P.W. [Aston Univ., Birmingham (United Kingdom) Dept. of Applied Mathematics; Phillips, C.A. [Sandia National Labs., Albuquerque, NM (United States); Sorkin, G.B. [International Business Machines Corp., Yorktown Heights, NY (United States). Thomas J. Watson Research Center

    1996-03-01

    There has been much recent algorithmic work on the problem of reconstructing the evolutionary history of biological species. Computer virus specialists are interested in finding the evolutionary history of computer viruses--a virus is often written using code fragments from one or more other viruses, which are its immediate ancestors. A phylogeny for a collection of computer viruses is a directed acyclic graph whose nodes are the viruses and whose edges map ancestors to descendants and satisfy the property that each code fragment is ``invented`` only once. To provide a simple explanation for the data, we consider the problem of constructing such a phylogeny with a minimal number of edges. In general, this optimization problem cannot be solved in quasi-polynomial time unless NQP=QP; we present positive and negative results for associated approximated problems. When tree solutions exist, they can be constructed and randomly sampled in polynomial time.

  4. Sulfated polysaccharides are potent and selective inhibitors of various enveloped viruses, including herpes simplex virus, cytomegalovirus, vesicular stomatitis virus, and human immunodeficiency virus.

    OpenAIRE

    Baba, M.; Snoeck, R; Pauwels, R; De Clercq, E

    1988-01-01

    Several sulfated polysaccharides (dextran sulfate, pentosan polysulfate, fucoidan, and carrageenans) proved to be potent inhibitors for herpes simplex virus, human cytomegalovirus, vesicular stomatitis virus, Sindbis virus, and human immunodeficiency virus. They were moderately inhibitory to vaccinia virus but not inhibitory to adenovirus, coxsackievirus, poliovirus, parainfluenza virus, and reovirus. These results indicate that, with the exception of parainfluenza virus, enveloped viruses ar...

  5. Zika virus - an overview.

    Science.gov (United States)

    Zanluca, Camila; Dos Santos, Claudia Nunes Duarte

    2016-05-01

    Zika virus (ZIKV) is currently one of the most important emerging viruses in the world. Recently, it has caused outbreaks and epidemics, and has been associated with severe clinical manifestations and congenital malformations. However to date, little is known about the pathogenicity of the virus and the consequences of ZIKV infection. In this paper, we provide an overview of the current knowledge on ZIKV. PMID:26993028

  6. The Influenza Virus Enigma

    OpenAIRE

    Salomon, Rachelle; Webster, Robert G.

    2009-01-01

    Both seasonal and pandemic influenza continue to challenge both scientists and clinicians. Drug-resistant H1N1 influenza viruses have dominated the 2009 flu season, and the H5N1 avian influenza virus continues to kill both people and poultry in Eurasia. Here, we discuss the pathogenesis and transmissibility of influenza viruses and we emphasize the need to find better predictors of both seasonal and potentially pandemic influenza.

  7. Endocytosis of influenza viruses

    OpenAIRE

    Lakadamyali, Melike; Rust, Michael J.; Zhuang, Xiaowei

    2004-01-01

    Receptor-mediated endocytosis is known to play an important role in the entry of many viruses into host cells. However, the exact internalization mechanism has, until recently, remained poorly understood for many medically important viruses, including influenza. Developments in real-time imaging of single viruses as well as the use of dominant negative mutants to selectively block specific endocytic pathways, have improved our understanding of the influenza infection process.

  8. Filamentous influenza viruses

    OpenAIRE

    Dadonaite, Bernadeta; Vijyakrishnan, Swetha; Fodor, Ervin; Bhella, David; Hutchinson, Edward C.

    2016-01-01

    Clinical isolates of influenza virus produce pleomorphic virus particles, including extremely long filamentous virions. In contrast, strains of influenza that have adapted to laboratory growth typically produce only spherical virions. As a result, the filamentous phenotype has been overlooked in most influenza virus research. Recent advances in imaging and improved animal models have highlighted the distinct structure and functional relevance of filamentous virions. In this review we summaris...

  9. The virus of management

    OpenAIRE

    Kjær, Peter; Frankel, Christian

    2004-01-01

    The virus metaphor may be used in studies of management knowledge not only as a way of describing diffusion processes but also as a way of thinking about viral elements of knowledge production. In the present article, organizational viruses are viewed as ensembles of basic distinctions that are constitutive of concrete bodies of knowledge and which form mutable engines of organizational self-descriptions. Organizational viruses, we contend, are both characterized by stability i...

  10. K-Basins design guidelines

    Energy Technology Data Exchange (ETDEWEB)

    Roe, N.R.; Mills, W.C.

    1995-06-01

    The purpose of the design guidelines is to enable SNF and K Basin personnel to complete fuel and sludge removal, and basin water mitigation by providing engineering guidance for equipment design for the fuel basin, facility modifications (upgrades), remote tools, and new processes. It is not intended to be a purchase order reference for vendors. The document identifies materials, methods, and components that work at K Basins; it also Provides design input and a technical review process to facilitate project interfaces with operations in K Basins. This document is intended to compliment other engineering documentation used at K Basins and throughout the Spent Nuclear Fuel Project. Significant provisions, which are incorporated, include portions of the following: General Design Criteria (DOE 1989), Standard Engineering Practices (WHC-CM-6-1), Engineering Practices Guidelines (WHC 1994b), Hanford Plant Standards (DOE-RL 1989), Safety Analysis Manual (WHC-CM-4-46), and Radiological Design Guide (WHC 1994f). Documents (requirements) essential to the engineering design projects at K Basins are referenced in the guidelines.

  11. K-Basins design guidelines

    International Nuclear Information System (INIS)

    The purpose of the design guidelines is to enable SNF and K Basin personnel to complete fuel and sludge removal, and basin water mitigation by providing engineering guidance for equipment design for the fuel basin, facility modifications (upgrades), remote tools, and new processes. It is not intended to be a purchase order reference for vendors. The document identifies materials, methods, and components that work at K Basins; it also Provides design input and a technical review process to facilitate project interfaces with operations in K Basins. This document is intended to compliment other engineering documentation used at K Basins and throughout the Spent Nuclear Fuel Project. Significant provisions, which are incorporated, include portions of the following: General Design Criteria (DOE 1989), Standard Engineering Practices (WHC-CM-6-1), Engineering Practices Guidelines (WHC 1994b), Hanford Plant Standards (DOE-RL 1989), Safety Analysis Manual (WHC-CM-4-46), and Radiological Design Guide (WHC 1994f). Documents (requirements) essential to the engineering design projects at K Basins are referenced in the guidelines

  12. Viruses in Turing's Garden

    OpenAIRE

    Marion, Jean-Yves

    2012-01-01

    Cohen and his supervisor Adleman defined a virus as follows: "A virus is a program that is able to infect other programs by modifying them to include a possibly evolved copy to itself". This definition seems to be well accepted by the computer security community as a foundational definition. Thus, a virus is a self-replicating program, whose offspring may be a mutation of the original program. Viruses thrive in our computers, which are based on Turing's model of computation. We discuss the fu...

  13. Residual viruses in pork products.

    Science.gov (United States)

    McKercher, P D; Hess, W R; Hamdy, F

    1978-01-01

    Partly cooked canned hams and dried pepperoni and salami sausages were prepared from the carcasses of pigs infected with African swine fever virus and pigs infected with hog cholera virus. Virus was not recovered from the partly cooked canned hams; however, virus was recovered in the hams before heating in both instances. Both African swine fever virus and hog cholera virus were recovered from the dried salami and pepperoni sausages, but not after the required curing period. PMID:564162

  14. FAQ: General Questions about West Nile Virus

    Science.gov (United States)

    ... Public Service Videos General Questions About West Nile Virus Recommend on Facebook Tweet Share Compartir On this ... West Nile virus cases? What is West Nile virus? West Nile virus is an arthropod-borne virus ( ...

  15. Marketing San Juan Basin gas

    International Nuclear Information System (INIS)

    Marketing natural gas produced in the San Juan Basin of New Mexico and Colorado principally involves four gas pipeline companies with significant facilities in the basin. The system capacity, transportation rates, regulatory status, and market access of each of these companies is evaluated. Because of excess gas supplies available to these pipeline companies, producers can expect improved take levels and prices by selling gas directly to end users and utilities as opposed to selling gas to the pipelines for system supply. The complexities of transporting gas today suggest that the services of an independent gas marketing company may be beneficial to smaller producers with gas supplies in the San Juan Basin

  16. Western Canada Sedimentary Basin competitiveness

    International Nuclear Information System (INIS)

    Recent dramatic expansion of the natural gas industry in the Western Canada Sedimentary Basin provided ample proof of the potential of this area for further development of natural gas supply. However, the inherent competitive advantages provided by the Western Canada Sedimentary Basin were said to have been offset by low netback prices resulting in poor producer economics when competitiveness is measured by availability of opportunities to find and develop gas supply at costs low enough to ensure attractive returns. Technology was identified as one of the key elements in improving basin competitiveness, but the greatest potential lies in reduced transportation costs and increased access to North American market centres. 8 figs

  17. Trip report Rainwater Basin Nebraska

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report is a summary a trip to Rainwater Basin Wetland Management District in 1991, and focuses on the hydrology and soil habitat types. It is part of the...

  18. Allegheny County Basin Outlines Map

    Data.gov (United States)

    Allegheny County / City of Pittsburgh / Western PA Regional Data Center — This basins dataset was created to initiate regional watershed approaches with respect to sewer rehabilitation. If viewing this description on the Western...

  19. Viral Haemorrhagic Septicaemia Virus

    DEFF Research Database (Denmark)

    Olesen, Niels Jørgen; Skall, Helle Frank

    This chapter covers the genetics (genotypes and serotypes), clinical signs, host species, transmission, prevalence, diagnosis, control and prevention of viral haemorrhagic septicaemia virus.......This chapter covers the genetics (genotypes and serotypes), clinical signs, host species, transmission, prevalence, diagnosis, control and prevention of viral haemorrhagic septicaemia virus....

  20. INFLUENZA VIRUS IN POULTRY

    Science.gov (United States)

    Avian influenza virus (AIV) is normally found in wild birds, particularly in ducks and shorebirds, where it does not cause any perceptible clinical disease. However, poultry, including chickens and turkeys, are not normal hosts for avian influenza, but if the virus is introduced it can result in mi...

  1. Zika Virus and Pregnancy.

    Science.gov (United States)

    Stagg, Denise; Hurst, Helen M

    2016-01-01

    Recent outbreaks of Zika virus and reports linking infection in pregnant women with microcephaly in newborns have caused concern worldwide. Information has been evolving rapidly. Nurses and other clinicians, especially those who work with women of childbearing age, play a pivotal role in disseminating accurate information and identifying potential cases of Zika virus infection. PMID:27287356

  2. Papaya ringspot virus (Potyviridae)

    Science.gov (United States)

    Papaya ringspot virus, a member of the family Potyviridae, is single stranded RNA plant virus with a monocistronic genome of about 10,326 nucleotides that is expressed via a large polyprotein subsequently cleaved into functional proteins. It causes severe damage on cucurbit crops such as squash and...

  3. Viral Haemorrhagic Septicaemia Virus

    DEFF Research Database (Denmark)

    Olesen, Niels Jørgen; Skall, Helle Frank

    2013-01-01

    This chapter covers the genetics (genotypes and serotypes), clinical signs, host species, transmission, prevalence, diagnosis, control and prevention of viral haemorrhagic septicaemia virus.......This chapter covers the genetics (genotypes and serotypes), clinical signs, host species, transmission, prevalence, diagnosis, control and prevention of viral haemorrhagic septicaemia virus....

  4. Rift Valley Fever Virus

    Science.gov (United States)

    Rift Valley fever virus (RVFV) is a mosquito-transmitted virus or arbovirus that is endemic in sub-Saharan Africa. In the last decade, Rift Valley fever (RVF) outbreaks have resulted in loss of human and animal life, as well as had significant economic impact. The disease in livestock is primarily a...

  5. Sustaining Exploration in Mature Basins

    International Nuclear Information System (INIS)

    Exploration is a business like any other business driven by opportunity, resources and expectation of profit. Therefore, exploration will thrive anywhere the opportunities are significant, the resources are available and the outlook for profit (or value creation) is good. To sustain exploration activities anywhere, irrespective of the environment, there must be good understanding of the drivers of these key investment criteria. This paper will examine these investment criteria as they relate to exploration business and address the peculiarity of exploration in mature basin. Mature basins are unique environment that lends themselves a mix of fears, paradigms and realities, particularly with respect to the perception of value. To sustain exploration activities in a mature basin, we need to understand these perceptions relative to the true drivers of profitability. Exploration in the mature basins can be as profitable as exploration in emerging basins if the dynamics of value definition-strategic and fiscal values are understood by operators, regulators and co ventures alike. Some suggestions are made in this presentation on what needs to be done in addressing these dynamic investment parameters and sustaining exploration activities in mature basins

  6. Computer Viruses: Pathology and Detection.

    Science.gov (United States)

    Maxwell, John R.; Lamon, William E.

    1992-01-01

    Explains how computer viruses were originally created, how a computer can become infected by a virus, how viruses operate, symptoms that indicate a computer is infected, how to detect and remove viruses, and how to prevent a reinfection. A sidebar lists eight antivirus resources. (four references) (LRW)

  7. Postmortem Stability of Ebola Virus

    OpenAIRE

    Prescott, Joseph; Bushmaker, Trenton; Fischer, Robert; Miazgowicz, Kerri; Judson, Seth; Vincent J. Munster

    2015-01-01

    The ongoing Ebola virus outbreak in West Africa has highlighted questions regarding stability of the virus and detection of RNA from corpses. We used Ebola virus–infected macaques to model humans who died of Ebola virus disease. Viable virus was isolated

  8. Hepatitis A virus antibody

    International Nuclear Information System (INIS)

    A description is presented of a radioimmunoassay designed to prove the presence of the antibody against the hepatitis A virus (HA Ab, anti-Ha) using an Abbott HAVAB set. This proof as well as the proof of the antibody against the nucleus of the hepatitis B virus is based on competition between a normal antibody against hepatitis A virus and a 125I-labelled antibody for the binding sites of a specific antigen spread all over the surface of a tiny ball; this is then indirect proof of the antibody under investigation. The method is described of reading the results from the number of impulses per 60 seconds: the higher the titre of the antibody against the hepatitis A virus in the serum examined, the lower the activity of the specimen concerned. The rate is reported of incidence of the antibody against the hepatitis A virus in a total of 68 convalescents after hepatitis A; the antibody was found in 94.1%. The immunoglobulin made from the convalescents' plasma showed the presence of antibodies in dilutions as high as 1:250 000 while the comparable ratio for normal immunoglobulin Norga was only 1:2500. Differences are discussed in the time incidence of the antibodies against the hepatitis A virus, the antibodies against the surface antigen of hepatitis B, and the antibody against the nucleus of the hepatitis V virus. (author)

  9. Archaeal virus-host interactions

    OpenAIRE

    Quax, T.E.F.

    2013-01-01

      The work presented in this thesis provides novel insights in several aspects of the molecular biology of archaea, bacteria and their viruses. Three fundamentally different groups of viruses are associated with the three domains of life. Archaeal viruses are characterized by a particularly high morphological and genetic diversity. Some archaeal viruses, such as Sulfolobus islandicus rod-shaped virus 2 (SIRV2), have quite remarkable infection cycles. As described in Chapter 1, infection ...

  10. Viruses in reptiles

    Directory of Open Access Journals (Sweden)

    Ariel Ellen

    2011-09-01

    Full Text Available Abstract The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself. 1. Introduction 2. Methods for working with reptilian viruses 3. Reptilian viruses described by virus families 3.1. Herpesviridae 3.2. Iridoviridae 3.2.1 Ranavirus 3.2.2 Erythrocytic virus 3.2.3 Iridovirus 3.3. Poxviridae 3.4. Adenoviridae 3.5. Papillomaviridae 3.6. Parvoviridae 3.7. Reoviridae 3.8. Retroviridae and inclusion body disease of Boid snakes 3.9. Arboviruses 3.9.1. Flaviviridae 3

  11. VHS virus - present situation

    DEFF Research Database (Denmark)

    Olesen, Niels Jørgen; Skall, Helle Frank

    worldwide distribution of the disease will be given. Virus evolution: Recent studies indicate that only a few amino acid changes in the structural proteins of VHSV can change the virulence patterns significantly, thereby coming closer to assessing the risk of none to low virulent viruses becoming high...... virulent. Virulence factors both depend on the ability of VHSV to enter a cell and on the speed and efficiency of virus replication in the cells. Apparently the viral nucleocapsid protein plays a very important role for the later and seems to be the target for determination of a virulence marker....

  12. VHS virus - present situation

    DEFF Research Database (Denmark)

    Skall, Helle Frank; Olesen, Niels Jørgen

    2015-01-01

    worldwide distribution of the disease will be given. Virus evolution: Recent studies indicate that only a few amino acid changes in the structural proteins of VHSV can change the virulence patterns significantly, thereby coming closer to assessing the risk of none to low virulent viruses becoming high...... virulent. Virulence factors both depend on the ability of VHSV to enter a cell and on the speed and efficiencyof virus replication in the cells. Apparently the viral nucleocapsid protein plays a very important role for the later and seems to be the target for determination of a virulence marker....

  13. Zika Virus Fact Sheet

    Science.gov (United States)

    ... medical care and advice. There is currently no vaccine available. Prevention Mosquito bites Protection against mosquito bites is a key measure to prevent Zika virus infection. This can be done by wearing ...

  14. Ebola (Ebola Virus Disease)

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Ebola (Ebola Virus Disease) Note: Javascript is disabled or is ... Tweet Share Compartir CDC's Ongoing Work to Contain Ebola in West Africa The Road to Zero: CDC’s ...

  15. Hepatitis G virus

    Institute of Scientific and Technical Information of China (English)

    Vasiliy Ivanovich Reshetnyak; Tatiana Igorevna Karlovich; Ljudmila Urievna Ilchenko

    2008-01-01

    A number of new hepatitis viruses (G,TT,SEN) were discovered late in the past century.We review the data available in the literature and our own findings suggesting that the new hepatitis G virus (HGV),disclosed in the late 1990s,has been rather well studied.Analysis of many studies dealing with HGV mainly suggests the lymphotropicity of this virus.HGV or GBV-C has been ascertained to influence course and prognosis in the HIV-infected patient.Until now,the frequent presence of GBV-C in coinfections,hematological diseases,and biliary pathology gives no grounds to determine it as an "accidental tourist" that is of no significance.The similarity in properties of GBV-C and hepatitis C virus (HCV) offers the possibility of using HGV,and its induced experimental infection,as a model to study hepatitis C and to develop a hepatitis C vaccine.

  16. [Zika, a neurotropic virus?].

    Science.gov (United States)

    Del Carpio-Orantes, Luis

    2016-01-01

    In this paper, the neurotropism potential Zika virus is discussed, by comparison with viruses both RNA and DNA are neurotropic known, also it is said that compared with the new viruses that have affected the Americas, as the chikungunya, Zika has shown great affinity by brain tissue, manifested by a high incidence of acute neurological conditions, such as Guillain-Barré syndrome, among others, as well as the reported incidence of microcephaly that is abnormally high compared with the previous incidence, which, in a stillborn subject necropsied significant alterations demonstrated in brain tissue, identifying viral material and live virus in the fetoplacental complex, and demonstrating the impact both white matter and gray matter as well as basal ganglia, corpus callosum, ventricles and spinal cord, which could explain the microcephaly that concerns him. Although not a direct cause-effect relationship is demonstrated, however current evidence supports that relationship, hoping to be supported scientifically. PMID:27197113

  17. Simian Immunodeficiency Virus Retropepsin

    Czech Academy of Sciences Publication Activity Database

    Konvalinka, Jan; Kräusslich, H. G.

    Amsterdam: Academic Press, 2013 - (Salvesen, G.), s. 204-207 ISBN 978-0-12-382219-2 Institutional support: RVO:61388963 Keywords : simian immunodeficiency virus * retropepsin * protease Subject RIV: CE - Biochemistry

  18. Ebola Virus Disease

    Science.gov (United States)

    ... long as their blood contains the virus. Sexual transmission More surveillance data and research are needed on the risks of sexual transmission, and particularly on the prevalence of viable and ...

  19. Hydrocarbon habitat in rifted basins

    Energy Technology Data Exchange (ETDEWEB)

    Ziegler, P.A. [Basel Univ. (Switzerland)

    1996-12-01

    Tectonically active rifts, palaeo-rifts and passive margin basins contain major hydrocarbon provinces. Their hydrocarbon charge can rely exclusively on pre-rift, syn-rift sedimentary sequences or a combination thereof. Maturation of source-rocks can be achieved during the syn-and/or post-rift stage of basin evolution. During rifting, conductive and convective heat transfer accounts for elevated geothermal gradients; these play an important role in the maturation of pre- and syn-rift source-rocks; as geothermal gradients decrease asymptotically during the post-rift stage, maturation of late syn- and post-rift source-rocks depends on massif overburden thicknesses. In most rift structuration and trap-formation predate or are contemporaneous with peak oil and gas generation. Post-rift subsidence and stress-induced basin tilting or inversion can cause modification of trap configurations, causing loss of hydrocarbons. (author). 58 refs., 1 fig., 1 tab.

  20. Zika Virus Outside Africa

    OpenAIRE

    Hayes, Edward B

    2009-01-01

    Zika virus (ZIKV) is a flavivirus related to yellow fever, dengue, West Nile, and Japanese encephalitis viruses. In 2007 ZIKV caused an outbreak of relatively mild disease characterized by rash, arthralgia, and conjunctivitis on Yap Island in the southwestern Pacific Ocean. This was the first time that ZIKV was detected outside of Africa and Asia. The history, transmission dynamics, virology, and clinical manifestations of ZIKV disease are discussed, along with the possibility for diagnostic ...

  1. Simian Varicella Virus Pathogenesis

    OpenAIRE

    Mahalingam, Ravi; Messaoudi, Ilhem; Gilden, Don

    2010-01-01

    Because varicella zoster virus (VZV) is an exclusively human pathogen, the development of an animal model is necessary to study pathogenesis, latency, and reactivation. The pathological, virological, and immunological features of simian varicella virus (SVV) infection in nonhuman primates are similar to those of VZV infection in humans. Both natural infection of cynomolgus and African green monkeys as well as intrabronchial inoculation of rhesus macaques with SVV provide the most useful model...

  2. Respiratory Syncytial Virus (RSV)

    Centers for Disease Control (CDC) Podcasts

    2013-02-04

    Respiratory Syncytial Virus, or RSV, causes cold-like symptoms but can be serious for infants and older adults. In this podcast, CDC’s Dr. Eileen Schneider discusses this common virus and offers tips to prevent its spread.  Created: 2/4/2013 by National Center for Immunization and Respiratory Diseases (NCIRD), Division of Viral Diseases (DVD).   Date Released: 2/13/2013.

  3. Geology, exploration status of Uruguay's sedimentary basins

    Energy Technology Data Exchange (ETDEWEB)

    Goso, C.; Santa Ana, H. de (Administracion Nacional de Combustibles, Alcohol y Portland (Uruguay))

    1994-02-07

    This article attempts to present the geological characteristics and tectonic and sedimentary evolution of Uruguayan basins and the extent to which they have been explored. Uruguay is on the Atlantic coast of South America. The country covers about 318,000 sq km, including offshore and onshore territories corresponding to more than 65% of the various sedimentary basins. Four basins underlie the country: the Norte basin, the Santa Lucia basin, the offshore Punta del Este basin, and the offshore-onshore Pelotas-Merin basin. The Norte basin is a Paleozoic basin while the others are Mesozoic basins. Each basin has been explored to a different extent, as this paper explains.

  4. How do Viruses Attack Anti-Virus Programs

    OpenAIRE

    Mishra, Umakant

    2013-01-01

    As the anti-viruses run in a trusted kernel level any loophole in the anti-virus program can enable attackers to take full control over the computer system and steal data or do serious damages. Hence the anti-virus engines must be developed with proper security in mind. The ant-virus should be able to any type of specially created executable files, compression packages or documents that are intentionally created to exploit the anti-virus weakness. Viruses are present in almost every system ev...

  5. Virus templated metallic nanoparticles

    Science.gov (United States)

    Aljabali, Alaa A. A.; Barclay, J. Elaine; Lomonossoff, George P.; Evans, David J.

    2010-12-01

    Plant viruses are considered as nanobuilding blocks that can be used as synthons or templates for novel materials. Cowpea mosaic virus (CPMV) particles have been shown to template the fabrication of metallic nanoparticles by an electroless deposition metallization process. Palladium ions were electrostatically bound to the virus capsid and, when reduced, acted as nucleation sites for the subsequent metal deposition from solution. The method, although simple, produced highly monodisperse metallic nanoparticles with a diameter of ca. templated particles were prepared with cobalt, nickel, iron, platinum, cobalt-platinum and nickel-iron.Plant viruses are considered as nanobuilding blocks that can be used as synthons or templates for novel materials. Cowpea mosaic virus (CPMV) particles have been shown to template the fabrication of metallic nanoparticles by an electroless deposition metallization process. Palladium ions were electrostatically bound to the virus capsid and, when reduced, acted as nucleation sites for the subsequent metal deposition from solution. The method, although simple, produced highly monodisperse metallic nanoparticles with a diameter of ca. templated particles were prepared with cobalt, nickel, iron, platinum, cobalt-platinum and nickel-iron. Electronic supplementary information (ESI) available: Additional experimental detail, agarose gel electrophoresis results, energy dispersive X-ray spectra, ζ-potential measurements, dynamic light scattering data, nanoparticle tracking analysis and an atomic force microscopy image of Ni-CPMV. See DOI: 10.1039/c0nr00525h

  6. WATSTORE Stream Flow Basin Characteristics File

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Stream Flow Basin Characteristics file contains information about the drainage basins of selected USGS gaging stations. Data elements of this file were...

  7. Origin of the earth's ocean basins

    Science.gov (United States)

    Frey, H.

    1977-01-01

    The earth's original ocean basins are proposed to be mare-type basins produced 4 billion y.a. by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upward from the observed number of lunar basins for the greater capture cross-section and impact velocity of the earth indicates that at least 50% of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60% oceanic, 40% continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  8. Krušné hory Piedmont basins. Sokolov Basin

    Czech Academy of Sciences Publication Activity Database

    Rojík, P.; Dašková, Jiřina; Kvaček, Z.; Pešek, J.; Sýkorová, Ivana; Teodoridis, V.

    Prague: Czech Geological Survey, 2014, s. 90-142 ISBN 978-80-7075-862-5 R&D Projects: GA ČR GA105/06/0653 Institutional support: RVO:67985891 ; RVO:67985831 Keywords : Tertiary basins * Czech Republic * Cenomanian and Tertiary lignite * geology * stratigraphy Subject RIV: DB - Geology ; Mineralogy

  9. Avian Influenza A Virus Infections in Humans

    Science.gov (United States)

    ... Past Newsletters Avian Influenza A Virus Infections in Humans Language: English Español Recommend on Facebook Tweet ... A Viruses Avian Influenza A Virus Infections in Humans Although avian influenza A viruses usually do not ...

  10. Supplementary information on K-Basin sludges

    Energy Technology Data Exchange (ETDEWEB)

    MAKENAS, B.J.

    1999-03-15

    Three previous documents in this series have been published covering the analysis of: K East Basin Floor and Pit Sludge, K East Basin Canister Sludge, and K West Basin Canister Sludge. Since their publication, additional data have been acquired and analyses performed. It is the purpose of this volume to summarize the additional insights gained in the interim time period.

  11. Supplementary information on K-Basin sludges

    International Nuclear Information System (INIS)

    Three previous documents in this series have been published covering the analysis of: K East Basin Floor and Pit Sludge, K East Basin Canister Sludge, and K West Basin Canister Sludge. Since their publication, additional data have been acquired and analyses performed. It is the purpose of this volume to summarize the additional insights gained in the interim time period

  12. A New Definition of Virus

    Institute of Scientific and Technical Information of China (English)

    HE Hongjun; CAO Sihua; LUO Li; FENG Tao; PAN Li; ZOU Zhiji

    2006-01-01

    Security experts have not formally defined the distinction between viruses and normal programs. The paper takes user's intension as the criteria for malice, gives a formal definition of viruses that aim at stealing or destroying files, and proposes an algorithm to detect virus correctly. Compared with traditional definitions, this new definition is easy to understand, covers more malwares, adapts development of virus technology, and defines virus on the spot. The paper has also analyzed more than 250 real viruses and finds that they are all in the domain of the new definition, this implies that the new definition has great practical significance.

  13. [Zika virus infection during pregnancy].

    Science.gov (United States)

    Picone, O; Vauloup-Fellous, C; D'Ortenzio, E; Huissoud, C; Carles, G; Benachi, A; Faye, A; Luton, D; Paty, M-C; Ayoubi, J-M; Yazdanpanah, Y; Mandelbrot, L; Matheron, S

    2016-05-01

    A Zika virus epidemic is currently ongoing in the Americas. This virus is linked to congenital infections with potential severe neurodevelopmental dysfunction. However, incidence of fetal infection and whether this virus is responsible of other fetal complications are still unknown. National and international public health authorities recommend caution and several prevention measures. Declaration of Zika virus infection is now mandatory in France. Given the available knowledge on Zika virus, we suggest here a review of the current recommendations for management of pregnancy in case of suspicious or infection by Zika virus in a pregnant woman. PMID:27079865

  14. Hepatitis viruses: Changing patterns of human disease

    OpenAIRE

    Purcell, R H

    1994-01-01

    Viral hepatitis is a disease of antiquity, but evidence for more than one etiologic agent has been recognized only since the 1940s, when two viruses (hepatitis A virus and hepatitis B virus) were thought to account for all disease. In the past 20 years, three additional hepatitis agents (hepatitis C virus, hepatitis D virus, and hepatitis E virus) have been discovered, and there is evidence for at least one additional virus. Each of the five recognized hepatitis viruses belongs to a different...

  15. New bifurcations of basin boundaries involving Wada and a smooth Wada basin boundary

    Institute of Scientific and Technical Information of China (English)

    Zou Hai-Lin; Xu Jian-Xue; Jiang Jun

    2008-01-01

    This paper demonstrates and analyses double heteroclinic tangency in a three-well potential model,which can produce three new types of bifurcations of basin boundaries including from smooth to Wada basin boundaries,from fractal to Wada basin boundaries in which no changes of accessible periodic orbits happen,and from Wada to Wada basin boundaries.In a model of mechanical oscillator,it shows that a Wada basin boundary can be smooth.

  16. The Mackenzie Basin impacts study

    International Nuclear Information System (INIS)

    In 1989, a commitment was made to begin development of a framework for an integrated regional impact assessment of global warming scenarios in the Mackenzie Basin, the most populated region of Canada's north. The project, called Mackenzie Basin Impact Study (MBIS), is led by a multidisciplinary working group from government and non-governmental organizations with interests in the Basin. Objectives of MBIS include defining the direction and magnitude of regional-scale impacts of global warming scenarios on the physical, biological, and human systems of the Basin. MBIS will also identify regional sensitivities to climate, inter-system linkages, uncertainties, policy implications, and research needs. MBIS research activities as of March 1992 are outlined and policy concerns related to global warming are listed. Two new methodologies are being developed by MBIS to address particular economic and policy concerns: a socio-economic resource accounting framework and an integrated land assessment framework. Throughout MBIS, opportunities will be presented for western science and traditional native knowledge to be integrated

  17. Molecular epidemiology of respiratory viruses in virus-induced asthma

    OpenAIRE

    HiroyukiTsukagoshi; TaiseiIshioka

    2013-01-01

    Acute respiratory illness (ARI) due to various viruses is not only the most common cause of upper respiratory infection in humans but is also a major cause of morbidity and mortality, leading to diseases such as bronchiolitis and pneumonia. Previous studies have shown that respiratory syncytial virus (RSV), human rhinovirus (HRV), human metapneumovirus (HMPV), human parainfluenza virus (HPIV), and human enterovirus (HEV) infections may be associated with virus-induced asthma. For example, it ...

  18. Recombinant Vaccinia Virus: Immunization against Multiple Pathogens

    Science.gov (United States)

    Perkus, Marion E.; Piccini, Antonia; Lipinskas, Bernard R.; Paoletti, Enzo

    1985-09-01

    The coding sequences for the hepatitis B virus surface antigen, the herpes simplex virus glycoprotein D, and the influenza virus hemagglutinin were inserted into a single vaccinia virus genome. Rabbits inoculated intravenously or intradermally with this polyvalent vaccinia virus recombinant produced antibodies reactive to all three authentic foreign antigens. In addition, the feasibility of multiple rounds of vaccination with recombinant vaccinia virus was demonstrated.

  19. Viruses, definitions and reality

    Directory of Open Access Journals (Sweden)

    Libia Herrero-Uribe

    2011-09-01

    Full Text Available Viruses are known to be abundant, ubiquitous, and to play a very important role in the health and evolution of life organisms. However, most biologists have considered them as entities separate from the realm of life and acting merely as mechanical artifacts that can exchange genes between different organisms. This article reviews some definitions of life organisms to determine if viruses adjust to them, and additionally, considers new discoveries to challenge the present definition of viruses. Definitions of life organisms have been revised in order to validate how viruses fit into them. Viral factories are discussed since these mini-organelles are a good example of the complexity of viral infection, not as a mechanical usurpation of cell structures, but as a driving force leading to the reorganization and modification of cell structures by viral and cell enzymes. New discoveries such as the Mimivirus, its virophage and viruses that produce filamentous tails when outside of their host cell, have stimulated the scientific community to analyze the current definition of viruses. One way to be free for innovation is to learn from life, without rigid mental structures or tied to the past, in order to understand in an integrated view the new discoveries that will be unfolded in future research. Life processes must be looked from the complexity and trans-disciplinarity perspective that includes and accepts the temporality of the active processes of life organisms, their interdependency and interrelation among them and their environment. New insights must be found to redefine life organisms, especially viruses, which still are defined using the same concepts and knowledge of the fifties. Rev. Biol. Trop. 59 (3: 993-998. Epub 2011 September 01.Los virus son abundantes, ubicuos, y juegan un papel muy importante en la salud y en la evolución de los organismos vivos. Sin embargo, la mayoría de los biólogos los siguen considerado como entidades separadas

  20. Ebola (Ebola Virus Disease): Transmission

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Ebola (Ebola Virus Disease) Note: Javascript is disabled or is ... message, please visit this page: About CDC.gov . Ebola (Ebola Virus Disease) About Ebola Questions & Answers 2014 ...

  1. Ebola (Ebola Virus Disease): Prevention

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Ebola (Ebola Virus Disease) Note: Javascript is disabled or is ... message, please visit this page: About CDC.gov . Ebola (Ebola Virus Disease) About Ebola Questions & Answers 2014 ...

  2. Ebola (Ebola Virus Disease): Treatment

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Ebola (Ebola Virus Disease) Note: Javascript is disabled or is ... message, please visit this page: About CDC.gov . Ebola (Ebola Virus Disease) About Ebola Questions & Answers 2014 ...

  3. Ebola (Ebola Virus Disease): Diagnosis

    Science.gov (United States)

    ... Search The CDC Cancel Submit Search The CDC Ebola (Ebola Virus Disease) Note: Javascript is disabled or is ... message, please visit this page: About CDC.gov . Ebola (Ebola Virus Disease) About Ebola Questions & Answers 2014 ...

  4. Special Issue: Honey Bee Viruses

    Directory of Open Access Journals (Sweden)

    Sebastian Gisder

    2015-10-01

    Full Text Available Pollination of flowering plants is an important ecosystem service provided by wild insect pollinators and managed honey bees. Hence, losses and declines of pollinating insect species threaten human food security and are of major concern not only for apiculture or agriculture but for human society in general. Honey bee colony losses and bumblebee declines have attracted intensive research interest over the last decade and although the problem is far from being solved we now know that viruses are among the key players of many of these bee losses and bumblebee declines. With this special issue on bee viruses we, therefore, aimed to collect high quality original papers reflecting the current state of bee virus research. To this end, we focused on newly discovered viruses (Lake Sinai viruses, bee macula-like virus, or a so far neglected virus species (Apis mellifera filamentous virus, and cutting edge technologies (mass spectrometry, RNAi approach applied in the field.

  5. Zika Virus Infection and Microcephaly

    OpenAIRE

    J Gordon Millichap

    2016-01-01

    A Task Force established by the Brazil Ministry of Health investigated the possible association of microcephaly with Zika virus infection during pregnancy and a registry for microcephaly cases among women suspected to have had Zika virus infection during pregnancy.

  6. Epstein-Barr virus test

    Science.gov (United States)

    ... medlineplus.gov/ency/article/003513.htm Epstein-Barr virus antibody test To use the sharing features on this page, please enable JavaScript. Epstein-Barr virus antibody test is a blood test to detect ...

  7. Natural Gas Exploration in Sichuan Basin

    Institute of Scientific and Technical Information of China (English)

    Hu Guangcan

    1995-01-01

    @@ Sichuan Basin located in the eastern part of Sichuan province, is a structural basin with obvious boundaries . It is also a geographic basin and covers an area of about180×103 km2. The basin is surrounded by mountains with altitudes of 1000-3000m above sea level. The western part of the basin is the Chengdu Plain.The middle part of the basin is hills with altitudes of300-600m above sea level. The eastern part of the basin is featured by bar anticlinal hills with a northeast-southwest trend and are separated in the middle by open flatlands .The hills have an altitude of 700-800m above sea level.

  8. Avian influenza viruses in humans.

    OpenAIRE

    Malik Peiris, J S

    2009-01-01

    Past pandemics arose from low pathogenic avian influenza (LPAI) viruses. In more recent times, highly pathogenic avian influenza (HPAI) H5N1, LPAI H9N2 and both HPAI and LPAI H7 viruses have repeatedly caused zoonotic disease in humans. Such infections did not lead to sustained human-to-human transmission. Experimental infection of human volunteers and seroepidemiological studies suggest that avian influenza viruses of other subtypes may also infect humans. Viruses of the H7 subtype appear to...

  9. Computer virus : design and detection

    OpenAIRE

    Arding, Petter; Hedelin, Hugo

    2014-01-01

    Computer viruses uses a few different techniques, with various intentions, toinfect files. However, what most of them have in common is that they wantto avoid detection by anti-malware software. To not get detected and stay unnoticed,virus creators have developed several methods for this. Anti-malwaresoftware is constantly trying to counter these methods of virus infections withtheir own detection-techniques. In this paper we have analyzed the differenttypes of viruses and their infection tec...

  10. Antigenic variants of rabies virus

    OpenAIRE

    Wiktor, TJ; Koprowski, H

    1980-01-01

    Antigenic variants of CVS-11 strain of rabies virus were selected after treatment of virus populations with monoclonal antibodies directed against the glycoprotein antigen of the virus. These variants resisted neutralization by the hybridoma antibody used for their selection. Two independently mutating antigenic sites could be distinguished when five variants were tested with nine hybridoma antibodies. The frequency of single epitope variants in a cloned rabies virus seed was approximately 1:...

  11. Geodynamics of the Sivas Basin (Turkey): from a forearc basin to a retroarc foreland basin

    Science.gov (United States)

    Legeay, Etienne; Ringenbach, Jean-Claude; Kergaravat, Charlie; Callot, Jean-Paul; Mohn, Geoffroy; Kavak, Kaan

    2016-04-01

    Anatolia records the consumption of several oceanic basins, from the Northern Neotethys domain, by north-dipping subduction until the end of Mesozoic. The associated obduction event occurred during Campanian, from North to South and from Greece to Oman, leading to the emplacement of ophiolite thrust sheets and associated ophiolitic mélange. In particular, the Sivas Basin in Eastern Anatolia is located at the boundary between the Kırsehir block to the East, Pontide arc to the North and Tauride Platform to the South, sutured by ophiolitic belts. The Sivas Basin formed a Tertiary fold-and-thrust belt, which exhibits mainly north verging thrust in Paleogene deposits, and South verging thrust in oligo-miocene sequence. To understand the northern verging thrust above south verging obduction, it is necessary to zoom out of the basin, and include a set of processes that affect the eastern Anatolia. This study aims to characterize the structural and sedimentary evolution of the Sivas Basin, based on a fieldwork approach, coupled to the interpretation of subsurface data, thermochronology and biostratigraphy. The Sivas Basin was initiated in a forearc setting relatively to the subduction of the Inner-Tauride Ocean while the associated ophiolites are obducted onto the northern passive margin of the Tauride margin. Early Maastrichtian to Paleocene deposits are represented by carbonate platforms located on ophiolitic highs, passing to turbidites and olistostomes toward the North. The early Eocene sediments, mainly composed of ophiolitic clasts, are deposited on a regional unconformity marked along the southern margin of the basin by incisions in response to the emergence of north-verging thrust. The middle Eocene sediments, intensively folded by northward thrusting, are mostly represented by flysch type deposits (olistostromes, mass-flows and turbidites). The onset of the compression is related to the initiation of the Taurus shortening in a retroarc situation, in response to

  12. Successor Characteristics of the Mesozoic and Cenozoic Songliao Basins

    Institute of Scientific and Technical Information of China (English)

    LI Zhongquan; Timothy KUSKY; YING Danlin; GUO Xiaoyu; LI Hongkui

    2008-01-01

    The Songliao basin is a complex successor basin that was initiated in the Mesozoic and experienced multiple periods of reactivation. Based on seismic and drilling data, as well as regional geologic research, we suggest that the Songliao basin contains several different successor basins resting on top of Carboniferous-Permian folded strata forming the basement to the Songliao basin. These basins include the Triassic-Mid Jurassic Paleo-foreland basin, the Late Jurassic-Early Cretaceous downfaulted basin, and an early Cretaceous depressed basin (since the Denglouku Group). This paper presents a systematic study of the basin-mountain interactions, and reveals that there are different types of prototype basin at different geologic times. These prototype basins sequentially superimposed and formed the large Songliao basin. Discovery of the Triassic-early Middle Jurassic paleo-foreland basin fills a Triassic-early Middle Jurassic gap in the geologic history of the Songliao basin. The paleoforeland basin, downfaulted basin, and depressed thermal subsidence basin all together represent the whole Mesozoic-Cenozoic geologic history and deformation of the Songliao basin. Discovery of the Triassic-early Middle Jurassic paleo-foreland basin plays an important role both for deep natural gas exploration and the study of basin-mountain coupling in north China and eastern China in general. This example gives dramatic evidence that we should give much more attention to the polyphase tectonic evolution of related basins for the next phase of exploration and study.

  13. Rhabdomyolysis Associated with Parainfluenza Virus

    Directory of Open Access Journals (Sweden)

    Miltiadis Douvoyiannis

    2013-01-01

    Full Text Available Influenza virus is the most frequently reported viral cause of rhabdomyolysis. A 7-year-old child is presented with rhabdomyolysis associated with parainfluenza type 2 virus. Nine cases of rhabdomyolysis associated with parainfluenza virus have been reported. Complications may include electrolyte disturbances, acute renal failure, and compartment syndrome.

  14. Archaeal virus-host interactions

    NARCIS (Netherlands)

    Quax, T.E.F.

    2013-01-01

      The work presented in this thesis provides novel insights in several aspects of the molecular biology of archaea, bacteria and their viruses. Three fundamentally different groups of viruses are associated with the three domains of life. Archaeal viruses are characterized by a particularly

  15. Protecting Your Computer from Viruses

    Science.gov (United States)

    Descy, Don E.

    2006-01-01

    A computer virus is defined as a software program capable of reproducing itself and usually capable of causing great harm to files or other programs on the same computer. The existence of computer viruses--or the necessity of avoiding viruses--is part of using a computer. With the advent of the Internet, the door was opened wide for these…

  16. Ipomoviruses: Squash vein yellowing virus, Cucumber vein yellowing virus, Cassava brown streak virus, and Ugandan cassava brown streak virus

    Science.gov (United States)

    Ipomoviruses including Squash vein yellowing virus, Cucumber vein yellowing virus and Cassava brown streak virus are currently causing significant economic impact on crop production in several regions of the world. Only recently have results of detailed characterization of their whitefly transmissi...

  17. THE BIOLOGY OF INFLUENZA VIRUSES

    OpenAIRE

    Bouvier, Nicole M.; Palese, Peter

    2008-01-01

    The influenza viruses are characterized by segmented, negative-strand RNA genomes requiring an RNA-dependent RNA polymerase of viral origin for replication. The particular structure of the influenza virus genome and function of its viral proteins enable antigenic drift and antigenic shift. These processes result in viruses able to evade the long-term adaptive immune responses in many hosts.

  18. Avian influenza virus RNA extraction

    Science.gov (United States)

    The efficient extraction and purification of viral RNA is critical for down-stream molecular applications whether it is the sensitive and specific detection of virus in clinical samples, virus gene cloning and expression, or quantification of avian influenza (AI) virus by molecular methods from expe...

  19. THE ADVANCED CHEMISTRY BASINS PROJECT

    Energy Technology Data Exchange (ETDEWEB)

    William Goddard; Peter Meulbroek; Yongchun Tang; Lawrence Cathles III

    2004-04-05

    In the next decades, oil exploration by majors and independents will increasingly be in remote, inaccessible areas, or in areas where there has been extensive shallow exploration but deeper exploration potential may remain; areas where the collection of data is expensive, difficult, or even impossible, and where the most efficient use of existing data can drive the economics of the target. The ability to read hydrocarbon chemistry in terms of subsurface migration processes by relating it to the evolution of the basin and fluid migration is perhaps the single technological capability that could most improve our ability to explore effectively because it would allow us to use a vast store of existing or easily collected chemical data to determine the major migration pathways in a basin and to determine if there is deep exploration potential. To this end a the DOE funded a joint effort between California Institute of Technology, Cornell University, and GeoGroup Inc. to assemble a representative set of maturity and maturation kinetic models and develop an advanced basin model able to predict the chemistry of hydrocarbons in a basin from this input data. The four year project is now completed and has produced set of public domain maturity indicator and maturation kinetic data set, an oil chemistry and flash calculation tool operable under Excel, and a user friendly, graphically intuitive basin model that uses this data and flash tool, operates on a PC, and simulates hydrocarbon generation and migration and the chemical changes that can occur during migration (such as phase separation and gas washing). The DOE Advanced Chemistry Basin Model includes a number of new methods that represent advances over current technology. The model is built around the concept of handling arbitrarily detailed chemical composition of fluids in a robust finite-element 2-D grid. There are three themes on which the model focuses: chemical kinetic and equilibrium reaction parameters, chemical

  20. Elucidating virus uptake and fusion by single virus tracing

    OpenAIRE

    Schupp, Dorothee Carolin

    2012-01-01

    Viruses are known to cause many diseases, from the common cold and cold sores to more serious diseases such as the Ebola virus disease and AIDS. Viruses have evolved different strategies to enter and infect cells. In order to infect a cell, viruses have to overcome the cell membrane barrier to deliver their genome to the site of replication. Enveloped viruses can either fuse directly at the plasma membrane or with an endosomal membrane after endocytic uptake. In this work, I studied the early...

  1. Relationship of lychnis ringspot virus to barley stripe mosaic virus and poa semilatent virus.

    Science.gov (United States)

    Hunter, B G; Smith, J; Fattouh, F; Jackson, A O

    1989-01-01

    Barley stripe mosaic virus (BSMV), poa semilatent virus (PSLV), and lychnis ringspot virus (LRSV) have previously been assigned to the hordeivirus group because of similarities in their particle morphology, physicochemical properties and serological analyses. However, the serological relationships of the three viruses have not been determined by direct comparison. The present study evaluated the relatedness of these viruses by Western and dot immunoblotting and by nucleic acid hybridizations. Serological analyses of the coat proteins separated by gel electrophoresis and of intact virus particles bound to nitrocellulose membranes revealed that BSMV and PSLV are distantly related, but that they are more closely related to each other than to LRSV. The genomic RNAs of the viruses failed to cross-hybridize in northern hybridization tests conducted at different temperatures. These comparisons showed that BSMV, PSLV and LRSV are distinct viruses with little nucleotide sequence relatedness. Thus our data provide additional support for their inclusion as separate members of the hordeivirus group. PMID:2722469

  2. Research on computer virus database management system

    Science.gov (United States)

    Qi, Guoquan

    2011-12-01

    The growing proliferation of computer viruses becomes the lethal threat and research focus of the security of network information. While new virus is emerging, the number of viruses is growing, virus classification increasing complex. Virus naming because of agencies' capture time differences can not be unified. Although each agency has its own virus database, the communication between each other lacks, or virus information is incomplete, or a small number of sample information. This paper introduces the current construction status of the virus database at home and abroad, analyzes how to standardize and complete description of virus characteristics, and then gives the information integrity, storage security and manageable computer virus database design scheme.

  3. Virus en Endodoncia

    OpenAIRE

    Hernández Vigueras, Scarlette; Salazar Navarrete, Luis; Pérez Tomás, Ricardo E.; Segura Egea, Juan José; Viñas, Miquel; López López, José

    2014-01-01

    La infección endodóntica es la infección que afecta al sistema de conductos radiculares y, sin duda, es el principal agente etiológico de las periodontitis apicales. Además, de las bacterias patógenas endodónticas, se ha buscado en los últimos años asociar la presencia de virus en distintos tipos de patología endodóntica. Los virus que más se han buscado y asociado son los pertenecientes a la familia herpesvirus, los cuales se han encontrado presentes en patologías periapicales principalmente...

  4. Zika virus: Indian perspectives

    Science.gov (United States)

    Mourya, Devendra T.; Shil, Pratip; Sapkal, Gajanan N.; Yadav, Pragya D.

    2016-01-01

    The emergence of Zika virus (ZiV), a mosquito borne Flavivirus like dengue (DEN) and chikungunya (CHIK), in Brazil in 2014 and its spread to various countries have led to a global health emergency. Aedes aegypti is the major vector for ZiV. Fast dissemination of this virus in different geographical areas posses a major threat especially to regions where the population lacks herd immunity against the ZiV and there is abundance of Aedes mosquitoes. In this review, we focus on current global scenario, epidemiology, biology, diagnostic challenges and remedial measures for ZiVconsidering the Indian perspective. PMID:27487998

  5. [ZIKA--VIRUS INFECTION].

    Science.gov (United States)

    Velev, V

    2016-01-01

    This review summarizes the knowledge of the scientific community for Zika-virus infection. It became popular because of severe congenital damage causes of CNS in newborns whose mothers are infected during pregnancy, as well as the risk of pandemic distribution. Discusses the peculiarities of the biology and ecology of vectors--blood-sucking mosquitoes Aedes; stages in the spread of infection and practical problems which caused during pregnancy. Attention is paid to the recommendations that allow leading national and international medical organizations to deal with the threat Zika-virus infection. PMID:27509655

  6. Zika virus: Indian perspectives.

    Science.gov (United States)

    Mourya, Devendra T; Shil, Pratip; Sapkal, Gajanan N; Yadav, Pragya D

    2016-05-01

    The emergence of Zika virus (ZiV), a mosquito borne Flavivirus like dengue (DEN) and chikungunya (CHIK), in Brazil in 2014 and its spread to various countries have led to a global health emergency. Aedes aegypti is the major vector for ZiV. Fast dissemination of this virus in different geographical areas posses a major threat especially to regions where the population lacks herd immunity against the ZiV and there is abundance of Aedes mosquitoes. In this review, we focus on current global scenario, epidemiology, biology, diagnostic challenges and remedial measures for ZiVconsidering the Indian perspective. PMID:27487998

  7. Sensing of RNA viruses

    DEFF Research Database (Denmark)

    Jensen, Søren; Thomsen, Allan Randrup

    2012-01-01

    Our knowledge regarding the contribution of the innate immune system in recognizing and subsequently initiating a host response to an invasion of RNA virus has been rapidly growing over the last decade. Descriptions of the receptors involved and the molecular mechanisms they employ to sense viral...... pathogen-associated molecular patterns have emerged in great detail. This review presents an overview of our current knowledge regarding the receptors used to detect RNA virus invasion, the molecular structures these receptors sense, and the involved downstream signaling pathways....

  8. Tenosinovitis por virus Chikungunya

    Directory of Open Access Journals (Sweden)

    Alfredo Seijo

    2014-12-01

    Full Text Available Se presenta a la consulta un hombre proveniente de la República Dominicana con una tenosinovitis del extensor del dedo medio derecho; en la convalecencia inmediata, segunda curva febril luego de 48 horas de permanecer asintomático de una enfermedad febril aguda, y marcada astenia, exantema pruriginoso, poliartralgias con impotencia funcional y rigidez articular generalizada. Los exámenes bioquímicos no aportaron datos de interés para el diagnóstico. La serología para virus dengue fue negativa. La detección de IgM y de anticuerpos neutralizantes para virus Chikungunya (CHIKV fueron positivos.

  9. Zika virus: Indian perspectives

    Directory of Open Access Journals (Sweden)

    Devendra T Mourya

    2016-01-01

    Full Text Available The emergence of Zika virus (ZiV, a mosquito borne Flavivirus like dengue (DEN and chikungunya (CHIK, in Brazil in 2014 and its spread to various countries have led to a global health emergency. Aedes aegypti is the major vector for ZiV. Fast dissemination of this virus in different geographical areas posses a major threat especially to regions where the population lacks herd immunity against the ZiV and there is abundance of Aedes mosquitoes. In this review, we focus on current global scenario, epidemiology, biology, diagnostic challenges and remedial measures for ZiVconsidering the Indian perspective.

  10. Bovine Virus Diarrhea (BVD)

    OpenAIRE

    Hoar, Bruce R.

    2004-01-01

    Bovine virus diarrhea (BVD) is a complicated disease to discuss as it can result in a wide variety of disease problems from very mild to very severe. BVD can be one of the most devastating diseases cattle encounter and one of the hardest to get rid of when it attacks a herd. The viruses that cause BVD have been grouped into two genotypes, Type I and Type II. The disease syndrome caused by the two genotypes is basically the same, however disease caused by Type II infection is often more severe...

  11. Response to the 2009-H1N1 influenza pandemic in the Mekong Basin: surveys of country health leaders

    OpenAIRE

    Dausey David J; Moore Melinda

    2011-01-01

    Abstract Background Soon after the 2009-H1N1 virus emerged as the first influenza pandemic in 41 years, countries had an early opportunity to test their preparedness plans, protocols and procedures, including their cooperation with other countries in responding to the global pandemic threat. The Mekong Basin Disease Surveillance cooperation (MBDS) comprises six countries - Cambodia, China (Yunnan and Guangxi Provinces), Lao People's Democratic Republic, Myanmar, Thailand and Vietnam - that fo...

  12. Parainfluenza Virus 5 Expressing the G Protein of Rabies Virus Protects Mice after Rabies Virus Infection

    OpenAIRE

    Huang, Ying; Chen, Zhenhai; Huang, Junhua; Fu, Zhenfang; He, Biao

    2014-01-01

    Rabies remains a major public health threat around the world. Once symptoms appear, there is no effective treatment to prevent death. In this work, we tested a recombinant parainfluenza virus 5 (PIV5) strain expressing the glycoprotein (G) of rabies (PIV5-G) as a therapy for rabies virus infection: we have found that PIV5-G protected mice as late as 6 days after rabies virus infection. PIV5-G is a promising vaccine for prevention and treatment of rabies virus infection.

  13. Experimental Drainage Basins in Israel

    Science.gov (United States)

    Laronne, J. B.; Lekach, J.; Cohen, H.; Gray, J.

    2002-12-01

    Within the hyper-arid to semiarid areas of Israel are three experimental drainage basins. They are the Nahal (stream in Hebrew) Yael, subdivided into five sub-basins, Rahaf-Qanna'im (main and tributary, respectively) and Eshtemoa. These basins vary in drainage area and climate, and in monitoring duration and type. All are drained by gravel-bed channels. As the size of monitored drainage area is limited, 3-4 additional representative basins covering areas of 300, 1000, 2000 and 8000 square kilometers will likely be implemented in the next decade. The basins have precipitation, runoff, sediment and fluviomorphological records. Each was conceived for differing purposes, but all share the common two objectives for the continuous monitoring: 1. Many hydrological issues may be approached if, and only if, there are prototype databases on a wide spectrum of hydrological processes; and 2. There is a need for long-term records to assess large floods and subsequent hydrologic and geomorphic recovery. Lessons derived from a large number of research projects on these experimental basins focus on characteristics of runoff in arid climates. For example, the effect of the spatial distribution of rainfall on runoff generation becomes increasingly important with aridity. Rainfall angle on hillslopes and storm intensity and direction derived from rainfall recorders and radar backscatter are crucial for explanation of runoff response. Runoff hydrographs tend to have more bores, shorter-duration peaks, briefer recessions, longer dry periods, and are more variable in terms of flood volume and peaks with increased aridity. Suspended-sediment fluxes, yields and concentrations are relatively large in the semiarid realm, reaching maxima at the beginning of a flood season and after long dry spells. Bedload fluxes are exceptionally high from dryland basins in which hillslopes are minimally vegetated and where bedload transport takes place in channels lacking an armor layer. Bedload

  14. Salt Lake in Chaidamu Basin

    Institute of Scientific and Technical Information of China (English)

    王良华

    2007-01-01

    Chaidamu Basin(柴达木盆地) is in the west of China. It covers an area(地区) of 220,000 square kilometres(平方公里). The number of salt lakes(盐湖) is more than twenty in it. Chaerhan(察尔汗) Salt Lake is the largest in this area. If you get here, you will find that in the lake there is no water but a thick layer(层) of salt. You can walk in it without difficulty, and cars can come and go across it. The thickest layer of salt in this basin is about fifty metres thick. People tried their best to use the salt to build house...

  15. Single Assay Detection of Acute Bee Paralysis Virus, Kashmir Bee Virus and Israeli Acute Paralysis Virus

    DEFF Research Database (Denmark)

    Francis, Roy Mathew; Kryger, Per

    2012-01-01

    A new RT-PCR primer pair designed to identify Acute Bee Paralysis Virus (ABPV), Kashmir Bee Virus (KBV) or Israeli Acute Bee Paralysis Virus (IAPV) of honey bees (Apis mellifera L.) in a single assay is described. These primers are used to screen samples for ABPV, KBV, or IAPV in a single RT...

  16. Viruses, Artificial Viruses and Virus-Based Structures for Biomedical Applications

    NARCIS (Netherlands)

    van Rijn, Patrick; Schirhagl, Romana

    2016-01-01

    Nanobiomaterials such as virus particles and artificial virus particles offer tremendous opportunities to develop new biomedical applications such as drug- or gene-delivery, imaging and sensing but also improve understanding of biological mechanisms. Recent advances within the field of virus-based s

  17. Petroleum geology of the northwest basin, Argentina

    Energy Technology Data Exchange (ETDEWEB)

    Ko, Jae Hong [Yonsei University, Seoul (Korea, Republic of); Oh, Jae Ho [Korea Institute of Geology Mining and Materials, Taejon (Korea, Republic of); Kim, Jong Young [Dong Won Co., Sabuk (Korea, Republic of)

    1997-06-30

    Petroleum geology of the Northwest Basin, Argentina has been studied in detail using seismic reflection profiles, drill holes and structure maps. The Northwest Basin comprises the following four successor basins that are different in characteristics and tectonic development: pre-Carboniferous, Carboniferous, Cretaceous, and Tertiary basins. Petroleum plays in the Northwest Basin can be divided into four types based on hydrocarbon-trap structures. These include thrust-folds, paleo-channels, volcanic mounds and roll-over anticlines related to normal faulting. The thrust-fold structure is a typical trap structure of pre-Carboniferous and Carboniferous basins, and consists of Cretaceous sedimentary rocks in southern exploration areas of the Northwest Basin. Paleo-channels provide a new possibility to the Carboniferous basin, and several of them occur in northern exploration areas of the Northwest Basin. Volcanic mounds and roll-over anticlines associated with the normal fault are related to the rifting event and play an important role in the Cretaceous basin. New prospects will be found if the above play types are well utilized. (author). 12 refs., 15 figs.

  18. Geodynamic evolution of sedimentary basins

    Energy Technology Data Exchange (ETDEWEB)

    Roure, F.; Ellouz, N.; Shein, V.S.; Skvortsov, I.I. [eds.

    1996-12-01

    This volume constitutes the proceedings of a conference held in Moscow in 1992, and organized by the Institut Francais du Petrole (IFP), the IGIRGI and VNIGNI Russian institutes under the auspices of the Russian Ministries of Fuels and Energy, Ecology and Nature. Geological features of the CIS countries, especially Russia, have driven their geologists` interest to specific questions as the petroleum potential of Proterozoic series, the resources located at a depth of 5000 m and more, or the impact of recent deformations on petroleum exploration and production. From the 27 papers of this conference, only 16 were selected which deal with oil and natural gas fields or coal deposits and geologic traps in the extensional and compressional basins of the CIS republics or in their western counterparts, or with physical and numerical structural models and other modeling techniques used for petroleum potential appraisal in sedimentary basins. The other papers deal with thematic aspects of basin formation in general or in specific areas with no reference to hydrocarbon genesis. (J.S.).

  19. Basin stability in delayed dynamics

    Science.gov (United States)

    Leng, Siyang; Lin, Wei; Kurths, Jürgen

    2016-02-01

    Basin stability (BS) is a universal concept for complex systems studies, which focuses on the volume of the basin of attraction instead of the traditional linearization-based approach. It has a lot of applications in real-world systems especially in dynamical systems with a phenomenon of multi-stability, which is even more ubiquitous in delayed dynamics such as the firing neurons, the climatological processes, and the power grids. Due to the infinite dimensional property of the space for the initial values, how to properly define the basin’s volume for delayed dynamics remains a fundamental problem. We propose here a technique which projects the infinite dimensional initial state space to a finite-dimensional Euclidean space by expanding the initial function along with different orthogonal or nonorthogonal basis. A generalized concept of basin’s volume in delayed dynamics and a highly practicable calculating algorithm with a cross-validation procedure are provided to numerically estimate the basin of attraction in delayed dynamics. We show potential applicabilities of this approach by applying it to study several representative systems of biological or/and physical significance, including the delayed Hopfield neuronal model with multistability and delayed complex networks with synchronization dynamics.

  20. K West Basin canister survey

    International Nuclear Information System (INIS)

    A survey was conducted of the K West Basin to determine the distribution of canister types that contain the irradiated N Reactor fuel. An underwater camera was used to conduct the survey during June 1998, and the results were recorded on videotape. A full row-by-row survey of the entire basin was performed, with the distinction between aluminum and stainless steel Mark 1 canisters made by the presence or absence of steel rings on the canister trunions (aluminum canisters have the steel rings). The results of the survey are presented in tables and figures. Grid maps of the three bays show the canister lid ID number and the canister type in each location that contained fuel. The following abbreviations are used in the grid maps for canister type designation: IA = Mark 1 aluminum, IS = Mark 1 stainless steel, and 2 = Mark 2 stainless steel. An overall summary of the canister distribution survey is presented in Table 1. The total number of canisters found to contain fuel was 3842, with 20% being Mark 1 Al, 25% being Mark 1 SS, and 55% being Mark 2 SS. The aluminum canisters were predominantly located in the East and West bays of the basin

  1. Bat flight and zoonotic viruses

    Science.gov (United States)

    O'Shea, Thomas; Cryan, Paul M.; Cunningham, Andrew A.; Fooks, Anthony R.; Hayman, David T.S.; Luis, Angela D.; Peel, Alison J.; Plowright, Raina K.; Wood, James L.N.

    2014-01-01

    Bats are sources of high viral diversity and high-profile zoonotic viruses worldwide. Although apparently not pathogenic in their reservoir hosts, some viruses from bats severely affect other mammals, including humans. Examples include severe acute respiratory syndrome coronaviruses, Ebola and Marburg viruses, and Nipah and Hendra viruses. Factors underlying high viral diversity in bats are the subject of speculation. We hypothesize that flight, a factor common to all bats but to no other mammals, provides an intensive selective force for coexistence with viral parasites through a daily cycle that elevates metabolism and body temperature analogous to the febrile response in other mammals. On an evolutionary scale, this host–virus interaction might have resulted in the large diversity of zoonotic viruses in bats, possibly through bat viruses adapting to be more tolerant of the fever response and less virulent to their natural hosts.

  2. The FEFM Virus.

    Science.gov (United States)

    Cjelli, Dirk

    1994-01-01

    Discussion of human performance technology (HPT) interventions focuses on requests for solutions to problems that involve conflict between the FEFM ("Fix 'em for me") Virus and the WIIFM ("What's in it for me?") Requirement. Building a relationship of mutual trust and confidence with the client and demonstrating responsiveness are advocated. (LRW)

  3. The Virus Business

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The Panda, a computer infection that wreaked havoc on computers across China, brought attention to the country’s underground computer virus business, but it was just the tip of a growing iceberg The cute and cuddly panda, a nation- al treasure of China

  4. Viruses of Haloarchaea

    Directory of Open Access Journals (Sweden)

    Alison W. S. Luk

    2014-11-01

    Full Text Available In hypersaline environments, haloarchaea (halophilic members of the Archaea are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tailed, pleomorphic, spherical and spindle-shaped morphologies, representing Myoviridae, Siphoviridae, Podoviridae, Pleolipoviridae, Sphaerolipoviridae and Fuselloviridae families. This review overviews current knowledge of haloarchaeoviruses, providing information about classification, morphotypes, macromolecules, life cycles, genetic manipulation and gene regulation, and host-virus responses. In so doing, the review incorporates knowledge from laboratory studies of isolated viruses, field-based studies of environmental samples, and both genomic and metagenomic analyses of haloarchaeoviruses. What emerges is that some haloarchaeoviruses possess unique morphological and life cycle properties, while others share features with other viruses (e.g., bacteriophages. Their interactions with hosts influence community structure and evolution of populations that exist in hypersaline environments as diverse as seawater evaporation ponds, to hot desert or Antarctic lakes. The discoveries of their wide-ranging and important roles in the ecology and evolution of hypersaline communities serves as a strong motivator for future investigations of both laboratory-model and environmental systems.

  5. Viruses of haloarchaea.

    Science.gov (United States)

    Luk, Alison W S; Williams, Timothy J; Erdmann, Susanne; Papke, R Thane; Cavicchioli, Ricardo

    2014-01-01

    In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tailed, pleomorphic, spherical and spindle-shaped morphologies, representing Myoviridae, Siphoviridae, Podoviridae, Pleolipoviridae, Sphaerolipoviridae and Fuselloviridae families. This review overviews current knowledge of haloarchaeoviruses, providing information about classification, morphotypes, macromolecules, life cycles, genetic manipulation and gene regulation, and host-virus responses. In so doing, the review incorporates knowledge from laboratory studies of isolated viruses, field-based studies of environmental samples, and both genomic and metagenomic analyses of haloarchaeoviruses. What emerges is that some haloarchaeoviruses possess unique morphological and life cycle properties, while others share features with other viruses (e.g., bacteriophages). Their interactions with hosts influence community structure and evolution of populations that exist in hypersaline environments as diverse as seawater evaporation ponds, to hot desert or Antarctic lakes. The discoveries of their wide-ranging and important roles in the ecology and evolution of hypersaline communities serves as a strong motivator for future investigations of both laboratory-model and environmental systems. PMID:25402735

  6. Viruses of the Archaea

    DEFF Research Database (Denmark)

    Basta, T.; Garrett, Roger Antony; Prangishvili,, David

    Double-stranded deoxyribonucleic acid (DNA) viruses that infect members of the third domain of life, the Archaea, are diverse and exceptional in both their morphotypes and their genomic properties. The majority of characterized species infect hyperthermophilic hosts and carry morphological features...

  7. The virus of management

    DEFF Research Database (Denmark)

    Kjær, Peter; Frankel, Christian

    2003-01-01

    concrete management knowledge and practice. The article isstructured as follows. After the introduction, we first develop the notion of organizational virus asinto an analytical approach. Second, we discern in the work of Frederick Taylor on scientificmanagement and Max Weber on bureaucracy, two quite...

  8. Viruses and febrile seizures

    NARCIS (Netherlands)

    Zeijl, J.H. van

    2004-01-01

    We conclude that viral infections are the main cause of febrile seizures, with an important role for influenza A, HHV-6 and HHV-7. We showed that several viral infections not only contribute to initial febrile seizures, but also to recurrences. Viruses could not be detected in the CSF of children wi

  9. Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus

    OpenAIRE

    Savithri, HS; Murthy, MRN

    1983-01-01

    The amino acid sequences of the non-structural protein (molecular weight 35,000; 3a protein) from three plant viruses - cucumber mosaic, brome mosaic and alfalfa mosaic have been systematically compared using the partial genomic sequences for these three viruses already available. The 3a protein of cucumber mosaic virus has an amino acid sequence homology of 33.7% with the corresponding protein of brome mosaic virus. A similar protein from alfalfa mosaic virus has a homology of 18.2% and 14.2...

  10. Molecular epidemiology of respiratory viruses in virus-induced asthma

    Directory of Open Access Journals (Sweden)

    Hiroyuki eTsukagoshi

    2013-09-01

    Full Text Available Acute respiratory illness (ARI due to various viruses is not only the most common cause of upper respiratory infection in humans but is also a major cause of morbidity and mortality, leading to diseases such as bronchiolitis and pneumonia. Previous studies have shown that respiratory syncytial virus (RSV, human rhinovirus (HRV, human metapneumovirus (HMPV, human parainfluenza virus (HPIV, and human enterovirus (HEV infections may be associated with virus-induced asthma. For example, it has been suggested that HRV infection is detected in the acute exacerbation of asthma and infection is prolonged. Thus it is believed that the main etiological cause of asthma is ARI viruses. Furthermore, the number of asthma patients in most industrial countries has greatly increased, resulting in a morbidity rate of around 10-15% of the population. However, the relationships between viral infections, host immune response, and host factors in the pathophysiology of asthma remain unclear. To gain a better understanding of the epidemiology of virus-induced asthma, it is important to assess both the characteristics of the viruses and the host defense mechanisms. Molecular epidemiology enables us to understand the pathogenesis of microorganisms by identifying specific pathways, molecules, and genes that influence the risk of developing a disease. However, the epidemiology of various respiratory viruses associated with virus-induced asthma is not fully understood. Therefore, in this article, we review molecular epidemiological studies of RSV, HRV, HPIV, and HMPV infection associated with virus-induced asthma.

  11. The geologic history of Margaritifer basin, Mars

    Science.gov (United States)

    Salvatore, M. R.; Kraft, M. D.; Edwards, C. S.; Christensen, P. R.

    2016-03-01

    In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

  12. Drainage basin delineations for selected USGS streamflow-gaging stations in Virginia (Drainage_Basin)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Drainage_Basin polygon feature class was created as a digital representation of drainage basins for more than 1,650 continuous-record streamflow-gaging...

  13. Inter-basin dynamics on multidimensional potential surfaces. I. Escape rates on complex basin surfaces

    Science.gov (United States)

    Despa, Florin; Berry, R. Stephen

    2001-11-01

    In this report, we present a general prescription for computing the escape rate of the system from a basin with full consideration of the topographical fingerprint of that basin. The method is based on a solution of the reduced Fokker-Planck equation and built up to allow the separation of the inter-basin dynamics from that of the intra-basin motion. The main result is that when local well populations thermalize within a basin, local minima, especially those of higher energy, enhance the escape rate from the basin. Also, numerical analyses lead to the inference that kinetic traps of "wrong" structures are distinctive topographical patterns which may produce kinetic properties similar to those of the primary basin, i.e., that containing the global minimum, but lie in other basins.

  14. Variable Efficacy of Extended-release Mosquito Larvicides Observed in Catch Basins in the Northeast Chicago Metropolitan Area

    Science.gov (United States)

    Harbison, Justin E.; Corcoran, Peter C.; Runde, Amy; Henry, Marlon; Xamplas, Christopher; Nasci, Roger S.

    2016-01-01

    Since the mid-1990s, the North Shore Mosquito Abatement District (NSMAD) has applied extended-release formulations of mosquito larvicides to approximately 50,000 catch basins in the suburbs north of Chicago, IL, USA. This is performed as part of NSMAD’s efforts to reduce local populations of the West Nile virus vector, Culex pipiens. Analyses from NSMAD’s monitoring of larvicide-treated basins throughout the District over the 2014 and 2015 seasons suggest that larvicides intended to provide extended durations of control (30–180 days) failed to provide control for the maximum duration specified on the product label in approximately 25% of the District’s basins. For larvicides designed to last up to 180 days (or about 26 weeks), failures were found at 1–15 weeks after treatment with most found at five weeks posttreatment. For larvicides formulated to last up to 30 days, failures were found at one to four weeks after applications with most found at three weeks posttreatment. The highest percentages of failing basins (ie, containing late-stage mosquito larvae or pupae during the specified product effectiveness period) were found in communities on the eastern side of the District, bordering Lake Michigan. As the larvicides appeared to function properly in the majority of monitored basins, it appears that the failures likely resulted from basin-specific physical factors (ie, basin volume, sediment content, and hydrology) that cause either product removal or a reduction in the concentration of the larvicide’s active ingredient below the effective levels in these basins. PMID:27103818

  15. Pull-apart basin tectonic model is structurally impossible for Kashmir basin, NW Himalaya

    OpenAIRE

    Shah , A.A.

    2016-01-01

    Kashmir Basin in NW Himalaya is considered a Neogene-Quatermary piggyback basin that was formed as result of the continent-continent collision of Indian and Eurasian plates. This model however is recently challenged by a pull-apart basin model, which argues that a major dextral strike-slip fault through Kashmir basin is responsible for its formation. And here it is demonstrated that the new tectonic model is structurally problematic, and co...

  16. Presence and Distribution of Tobacco Viruses in Serbia

    OpenAIRE

    Nataša Duduk; Aleksandra Bulajić; Janoš Berenji; Ivana Đekić; Bojan Duduk; Branka Krstić

    2006-01-01

    Infection with a large number of plant viruses could imperil tobacco yield and quality. Tobacco is a natural host for more than 20 viruses, among which the most important and economically harmful are tobacco mosaic virus (TMV), tomato spotted wilt virus (TSWV), cucumber mosaic virus (CMV), potato virus Y (PVY), alfalfa mosaic virus (AMV), tobacco ringspot virus (TRSV), tobacco each virus (TEV) and tobacco vein mottling virus (TVMV).The occurence and distribution of tobacco viruses were invest...

  17. Hydrocarbon Migration and Accumulation in Dongying Basin

    Institute of Scientific and Technical Information of China (English)

    Li Chunguang; Shang Weirong

    1996-01-01

    @@ Dongying basin is a faulted basin rich in hydrocarbon and is under more exploration (wildcat well density is 0.155 well/km ) in the southern Bohai Bay area of China, covering an area of 5700 km. Based on the paleotopographic setting of Paleozoic basement rocks, the basin was evolved into Mesozoic and Cenozoic basin which was faulted in the north and overlapped in the south by the blockfaulting movement in J2-J3. So, each formation of the source rocks in Paleogene is characterized by thick deposit in the north and thin deposit in the south.

  18. Hack's law of debris-flow basins

    Institute of Scientific and Technical Information of China (English)

    LI Yong; YUE Z.Q.; LEE C.F.; BEIGHLEY R.E.; CHEN Xiao-Qing; HU Kai-Heng; CUI Peng

    2009-01-01

    Hack's law was originally derived from basin statistics for varied spatial scales and regions.The exponent value of the law has been shown to vary between 0.47 and 0.70,causing uncertainty in its application.This paper focuses on the emergence of Hack's law from debris-flow basins in China.Over 5,000 debris-flow basins in different regions of China with drainage areas less than 100km2 are included in this study.Basins in the different regions are found to present similar distributions.Hack's law is derived fi'om maximum probability and conditional distributions,suggesting that the law should describe some critical state of basin evolution.Results suggest the exponent value is approximately 0.5.Further analysis indicates that Hack's law is related to other scaling laws underlying the evolution of a basin and that the exponent is not dependent on basin shape but rather on the evolutionary stage.A case study of a well known debris-flow basin further confirms Hack's law and its implications in basin evolution.

  19. Relating petroleum system and play development to basin evolution: West African South Atlantic basins

    NARCIS (Netherlands)

    Beglinger, S.E.; Doust, H.; Cloetingh, S.A.P.L.

    2012-01-01

    Sedimentary basins can be classified according to their structural genesis and evolutionary history and the latter can be linked to petroleumsystem and playdevelopment. We propose an approach in which we use the established concepts in a new way: breaking basins down into their natural basin cycle d

  20. Fractal basin boundaries generated by basin cells and the geometry of mixing chaotic flows

    NARCIS (Netherlands)

    Nusse, HE; Yorke, JA

    2000-01-01

    Experiments and computations indicate that mixing in chaotic flows generates certain coherent spatial structures. Lf a two-dimensional basin has a basin cell (a trappings region whose boundary consists of pieces of the stable and unstable manifold of some periodic orbit) then the basin consists of a

  1. Single virus genomics: a new tool for virus discovery.

    Directory of Open Access Journals (Sweden)

    Lisa Zeigler Allen

    Full Text Available Whole genome amplification and sequencing of single microbial cells has significantly influenced genomics and microbial ecology by facilitating direct recovery of reference genome data. However, viral genomics continues to suffer due to difficulties related to the isolation and characterization of uncultivated viruses. We report here on a new approach called 'Single Virus Genomics', which enabled the isolation and complete genome sequencing of the first single virus particle. A mixed assemblage comprised of two known viruses; E. coli bacteriophages lambda and T4, were sorted using flow cytometric methods and subsequently immobilized in an agarose matrix. Genome amplification was then achieved in situ via multiple displacement amplification (MDA. The complete lambda phage genome was recovered with an average depth of coverage of approximately 437X. The isolation and genome sequencing of uncultivated viruses using Single Virus Genomics approaches will enable researchers to address questions about viral diversity, evolution, adaptation and ecology that were previously unattainable.

  2. Neuroteratogenic Viruses and Lessons for Zika Virus Models.

    Science.gov (United States)

    Kim, Kenneth; Shresta, Sujan

    2016-08-01

    The Centers for Disease Control and Prevention has confirmed that Zika virus (ZIKV) causes congenital microcephaly. ZIKV now joins five other neuroteratogenic (NT) viruses in humans and ZIKV research is in its infancy. In addition, there is only one other NT human arbovirus (Venezuelan equine encephalitis virus), which is also poorly understood. But further insight into ZIKV can be found by evaluating arboviruses in domestic animals, of which there are at least seven NT viruses, three of which have been well studied. Here we review two key anatomical structures involved in modeling transplacental NT virus transmission: the placenta and the fetal blood-brain barrier. We then survey major research findings regarding transmission of NT viruses for guidance in establishing a mouse model of Zika disease that is crucial for a better understanding of ZIKV transmission and pathogenesis. PMID:27387029

  3. 9 CFR 113.215 - Bovine Virus Diarrhea Vaccine, Killed Virus.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Bovine Virus Diarrhea Vaccine, Killed... REQUIREMENTS Killed Virus Vaccines § 113.215 Bovine Virus Diarrhea Vaccine, Killed Virus. Bovine Virus Diarrhea... paragraph. (i) Eight bovine virus diarrhea susceptible calves (five vaccinates and three controls) shall...

  4. Rapid Detection and Quantification of RNA of Ebola and Marburg Viruses, Lassa Virus, Crimean-Congo Hemorrhagic Fever Virus, Rift Valley Fever Virus, Dengue Virus, and Yellow Fever Virus by Real-Time Reverse Transcription-PCR

    OpenAIRE

    Drosten, Christian; Göttig, Stephan; Schilling, Stefan; Asper, Marcel; Panning, Marcus; Schmitz, Herbert; Günther, Stephan

    2002-01-01

    Viral hemorrhagic fevers (VHFs) are acute infections with high case fatality rates. Important VHF agents are Ebola and Marburg viruses (MBGV/EBOV), Lassa virus (LASV), Crimean-Congo hemorrhagic fever virus (CCHFV), Rift Valley fever virus (RVFV), dengue virus (DENV), and yellow fever virus (YFV). VHFs are clinically difficult to diagnose and to distinguish; a rapid and reliable laboratory diagnosis is required in suspected cases. We have established six one-step, real-time reverse transcripti...

  5. Seismic Characterization of the Jakarta Basin

    Science.gov (United States)

    Cipta, A.; Saygin, E.; Cummins, P. R.; Masturyono, M.; Rudyanto, A.; Irsyam, M.

    2015-12-01

    Jakarta, Indonesia, is home to more than 10 million people. Many of these people live in seismically non-resilient structures in an area that historical records suggest is prone to earthquake shaking. The city lies in a sedimentary basin composed of Quaternary alluvium that experiences rapid subsidence (26 cm/year) due to groundwater extraction. Forecasts of how much subsidence may occur in the future are dependent on the thickness of the basin. However, basin geometry and sediment thickness are poorly known. In term of seismic hazard, thick loose sediment can lead to high amplification of seismic waves, of the kind that led to widespread damage in Mexico city during the Michoacan Earthquake of 1985. In order to characterize basin structure, a temporary seismograph deployment was undertaken in Jakarta in Oct 2013- Jan 2014. A total of 96 seismic instrument were deployed throughout Jakarta were deployed throughout Jakarta at 3-5 km spacing. Ambient noise tomography was applied to obtain models of the subsurface velocity structure. Important key, low velocity anomalies at short period (<8s) correspond to the main sedimentary sub-basins thought to be present based on geological interpretations of shallow stratigraphy in the Jakarta Basin. The result shows that at a depth of 300 m, shear-wave velocity in the northern part (600 m/s) of the basin is lower than that in the southern part. The most prominent low velocity structure appears in the northwest of the basin, down to a depth of 800 m, with velocity as low as 1200 m/s. This very low velocity indicates the thickness of sediment and the variability of basin geometry. Waveform computation using SPECFEM2D shows that amplification due to basin geometry occurs at the basin edge and the thick sediment leads to amplification at the basin center. Computation also shows the longer shaking duration occurrs at the basin edge and center of the basin. The nest step will be validating the basin model using earthquake events

  6. Resveratrol, sirtuins, and viruses.

    Science.gov (United States)

    Yang, Tao; Li, Shugang; Zhang, Xuming; Pang, Xiaowu; Lin, Qinlu; Cao, Jianzhong

    2015-11-01

    Resveratrol is a natural phenolic product found in some plants in response to stress and has been linked to the many health benefits of red wine. Over the past several decades, a great deal of research has identified diverse biological roles associated with resveratrol, including anti-oxidant, anti-proliferation, anti-inflammation, anti-cancer, anti-fungal, and antiviral activities. Such biological activities of resveratrol are likely mediated through multiple cellular targets or pathways, such as sirtuins, a family of NAD(+)-dependent deacetylases. In this treatise, the literatures focusing on the roles of resveratrol and sirtuins in modulating infections by a broad-spectrum of viruses are reviewed, with an emphasis on its potential antiviral mechanisms. A working model about the effects of resveratrol on virus infection is proposed to stimulate further researches on this exciting topic. PMID:26479742

  7. Vade retro virus

    OpenAIRE

    Bardini, Thierry

    2015-01-01

    Avec l’aide de récents résultats de la virologie, le présent article se concentre sur les virus en tant que participants d’une possible redéfinition de la frontière inférieure de la vie, en tant que vie minimale. À l’heure du triomphe de la viralité dans la cyberculture contemporaine, l’auteur avance que l’on devrait considérer les virus comme les premières formes d’entités convergentes, c’est-à-dire existant par-delà la division du monde en deux phases distinctes et incompatibles, numérique ...

  8. [Ebola virus disease: Update].

    Science.gov (United States)

    de la Calle-Prieto, Fernando; Arsuaga-Vicente, Marta; Mora-Rillo, Marta; Arnalich-Fernandez, Francisco; Arribas, Jose Ramon

    2016-01-01

    The first known Ebola outbreak occurred in 1976. Since then, 24 limited outbreaks had been reported in Central Africa, but never affecting more than 425 persons. The current outbreak in Western Africa is the largest in history with 28,220 reported cases and 11,291 deaths. The magnitude of the epidemic has caused worldwide alarm. For the first time, evacuated patients were treated outside Africa, and secondary cases have occurred in Spain and the United States. Since the start of the current epidemic, our knowledge about the epidemiology, clinical picture, laboratory findings, and virology of Ebola virus disease has considerably expanded. For the first time, experimental treatment has been tried, and there have been spectacular advances in vaccine development. A review is presented of these advances in the knowledge of Ebola virus disease. PMID:26774254

  9. Proteorhodopsin genes in giant viruses

    Directory of Open Access Journals (Sweden)

    Yutin Natalya

    2012-10-01

    Full Text Available Abstract Viruses with large genomes encode numerous proteins that do not directly participate in virus biogenesis but rather modify key functional systems of infected cells. We report that a distinct group of giant viruses infecting unicellular eukaryotes that includes Organic Lake Phycodnaviruses and Phaeocystis globosa virus encode predicted proteorhodopsins that have not been previously detected in viruses. Search of metagenomic sequence data shows that putative viral proteorhodopsins are extremely abundant in marine environments. Phylogenetic analysis suggests that giant viruses acquired proteorhodopsins via horizontal gene transfer from proteorhodopsin-encoding protists although the actual donor(s could not be presently identified. The pattern of conservation of the predicted functionally important amino acid residues suggests that viral proteorhodopsin homologs function as sensory rhodopsins. We hypothesize that viral rhodopsins modulate light-dependent signaling, in particular phototaxis, in infected protists. This article was reviewed by Igor B. Zhulin and Laksminarayan M. Iyer. For the full reviews, see the Reviewers’ reports section.

  10. Geographic distribution of Bhanja virus.

    Science.gov (United States)

    Hubálek, Z

    1987-01-01

    A review on the geographic distribution, vectors and hosts of Bhanja virus (Bunyaviridae) is based on reports about: isolations of the virus; antibody surveys. Bhanja virus has been isolated in 15 countries of Asia, Africa and Europe, and antibodies against it have been detected in 15 additional countries. Vector range includes ticks of the family Ixodidae (subfam. Amblyomminae; not subfam. Ixodinae): 13 species of 6 genera (Haemaphysalis, Dermacentor, Hyalomma, Amblyomma, Rhipicephalus and Boophilus) yielded the virus. Bhanja virus has only rarely been isolated from vertebrates (Atelerix, Xerus, Ovis, Bos; possibly bats), though antibodies have been detected frequently in a wide range of mammals (Ruminantia being the major hosts), in several species of birds (Passeriformes, Galliformes) and even reptiles (Ophisaurus apodus). Natural foci of the Bhanja virus infections are of the boskematic type (sensu Rosický), associated closely with pastures of domestic ruminants infested by ticks in the regions of tropical, subtropical and partly temperate climatic zones. PMID:3108117

  11. Ebola Virus Disease

    Centers for Disease Control (CDC) Podcasts

    2014-08-08

    This podcast provides general information about Ebola virus disease and the outbreak in West Africa. The program contains remarks from CDC Director Dr. Tom Frieden, as well as a brief description of CDC’s response efforts.  Created: 8/8/2014 by National Center for Emerging and Zoonotic Infectious Diseases (NCEZID).   Date Released: 8/8/2014.

  12. Framework Ebola Virus Disease

    OpenAIRE

    2014-01-01

    The current outbreak of Ebola virus disease (EVD) in West Africa is the largest recognized outbreak of this disease to date. It is also the first such outbreak including cases infected outside of Africa. The risk of an introduction of EVD to Germany (defined as an infected person entering Germany and passing the infection to others) is very low. But it cannot be totally excluded that in isolated instances infected persons could enter unrecognizably during the incubation period, potentiall...

  13. Viruses and drinking water

    OpenAIRE

    Cartwright, R Y

    1997-01-01

    There is no evidence to indicate that there is a risk of acquiring a virus infection through the consumption of properly treated drinking water, provided the integrity of the distribution system is maintained and there is no post-treatment contamination. The consumption of inadequately treated, untreated or post-treatment contaminated water is, however, associated with a risk of hepatitis A, hepatitis E and viral gastroenteritis. The use of the standard bacterial indicators for water monitori...

  14. Parainfluenza Virus Infection.

    Science.gov (United States)

    Branche, Angela R; Falsey, Ann R

    2016-08-01

    Human parainfluenza viruses (HPIVs) are single-stranded, enveloped RNA viruses of the Paramyoviridaie family. There are four serotypes which cause respiratory illnesses in children and adults. HPIVs bind and replicate in the ciliated epithelial cells of the upper and lower respiratory tract and the extent of the infection correlates with the location involved. Seasonal HPIV epidemics result in a significant burden of disease in children and account for 40% of pediatric hospitalizations for lower respiratory tract illnesses (LRTIs) and 75% of croup cases. Parainfluenza viruses are associated with a wide spectrum of illnesses which include otitis media, pharyngitis, conjunctivitis, croup, tracheobronchitis, and pneumonia. Uncommon respiratory manifestations include apnea, bradycardia, parotitis, and respiratory distress syndrome and rarely disseminated infection. Immunity resulting from disease in childhood is incomplete and reinfection with HPIV accounts for 15% of respiratory illnesses in adults. Severe disease and fatal pneumonia may occur in elderly and immunocompromised adults. HPIV pneumonia in recipients of hematopoietic stem cell transplant (HSCT) is associated with 50% acute mortality and 75% mortality at 6 months. Though sensitive molecular diagnostics are available to rapidly diagnose HPIV infection, effective antiviral therapies are not available. Currently, treatment for HPIV infection is supportive with the exception of croup where the use of corticosteroids has been found to be beneficial. Several novel drugs including DAS181 appear promising in efforts to treat severe disease in immunocompromised patients, and vaccines to decrease the burden of disease in young children are in development. PMID:27486735

  15. Linking basin evolution to plate tectonic processes in (northern) Africa

    OpenAIRE

    Gravråk, Mariann

    2011-01-01

    Several sedimentary basins in Africa are classified as intracratonic basins, but no conclusive formation mechanism has been identified for these basin types. Tectonic subsidence curves may help in unraveling formation mechanisms or identify tectonic forcing for these basins. This thesis presents and analyses basin subsidence curves for basins in the interior of Africa and near its passive margins. A backstripping program has been written to solve the backstripping equations needed to make the...

  16. Computer viruses and electronic mail

    OpenAIRE

    Buzzi, Marina

    2002-01-01

    Today the Internet is a valuable source of information as well as a powerful communication medium, with undoubted social and economic benefits, however it also poses some security risks. Virsuses may hide in email attachments or in appartently innocent applications directly downloadable from the Internet. In this work we give a brief overview of virus types and main defense techniques. Then we present statistical data of virus attacks revealed by an anti-virus SW activated on our e-mail serve...

  17. Lagos Bat Virus in Kenya▿

    OpenAIRE

    Kuzmin, Ivan V.; Niezgoda, Michael; Franka, Richard; Agwanda, Bernard; Markotter, Wanda; Beagley, Janet C.; Urazova, Olga Y.; Breiman, Robert F.; Rupprecht, Charles E.

    2008-01-01

    During lyssavirus surveillance, 1,221 bats of at least 30 species were collected from 25 locations in Kenya. One isolate of Lagos bat virus (LBV) was obtained from a dead Eidolon helvum fruit bat. The virus was most similar phylogenetically to LBV isolates from Senegal (1985) and from France (imported from Togo or Egypt; 1999), sharing with these viruses 100% nucleoprotein identity and 99.8 to 100% glycoprotein identity. This genome conservancy across space and time suggests that LBV is well ...

  18. Variant (Swine Origin) Influenza Viruses in Humans

    Science.gov (United States)

    ... Past Newsletters Variant (Swine Origin) Influenza Viruses in Humans Language: English Español Recommend on Facebook Tweet ... Page Background Reporting Additional Information Key Facts about Human Infections with Variant Viruses (Swine Origin Influenza Viruses ...

  19. Dengue virus growth, purification, and fluorescent labeling.

    Science.gov (United States)

    Zhang, Summer; Chan, Kuan Rong; Tan, Hwee Cheng; Ooi, Eng Eong

    2014-01-01

    The early events of the dengue virus life cycle involve virus binding, internalization, trafficking, and fusion. Fluorescently labeled viruses can be used to visualize these early processes. As dengue virus has 180 identical copies of the envelope protein attached to the membrane surface and is surrounded by a lipid membrane, amine-reactive (Alexa Fluor) or lipophilic (DiD) dyes can be used for virus labeling. These dyes are highly photostable and are ideal for studies involving cellular uptake and endosomal transport. To improve virus labeling efficiency and minimize the nonspecific labeling of nonviral proteins, virus concentration and purification precede fluorescent labeling of dengue viruses. Besides using these viruses for single-particle tracking, DiD-labeled viruses can also be used to distinguish serotype-specific from cross-neutralizing antibodies. Here the details of virus concentration, purification, virus labeling, applications, and hints of troubleshooting are described. PMID:24696327

  20. Zika Virus and Complications: Questions and Answers

    Science.gov (United States)

    ... Feed Youtube Twitter Facebook Google + iTunes Play Store Zika virus and complications: Questions and answers Online Q& ... a cause of microcephaly and Guillain-Barré syndrome. Zika virus Updated! How do people catch Zika virus? ...

  1. Chikungunya Virus: What You Need to Know

    Science.gov (United States)

    Chikungunya Virus: What you need to know Chikungunya (pronunciation: \\chik-en-gun-ye) is: A virus spread through Aedes species mosquito bites. Aedes mosquitoes also spread dengue and Zika viruses. A risk to anyone traveling to a region ...

  2. Red River Basin Mapping 2008-2010

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — This LiDAR data covers the Red River Basin with portions of ND, MN, SD and flows into Canada. The US Red River Basin boudnary covers 40,860 sqmi,with the additional...

  3. The structure of Nansen and Amundsen Basin

    Science.gov (United States)

    Micksch, U.; Jokat, W.

    2003-04-01

    During the AMORE expedition in August/September 2001, a US-German joint project, the Gakkel Ridge and the adjoining basins were investigated. In this contribution we report on the results of the seismic investigations in the Nansen Basin as well as in the Amundsen Basin. We obtained two almost parallel profiles through the Nansen Basin from the northeastern continental margin of Svalbard (29°E and 32°E) to the Gakkel Ridge at 17°E and 21°E. To investigate the Amundsen Basin, we left Gakkel Ridge at about 70°E towards Lomonossov Ridge for another transect. In total 1360 km of seismic reflection data with very good data quality were recorded. Parallel to the seismic reflection transects up to 30 sonobuoys were deployed. The data from both basins shows striking differences in the basement topography. While in the Nansen Basin the oceanic crust is more or less continuously shallowing, this is not the case in the Amundsen Basin. This points to some asymmetric spreading history of the Gakkel Ridge in northern and southern directions. Some of the Sonobuoys recorded also weak arrivals from the Moho discontinuity. The analysis of the wide angle and gravity data shows, that there are areas with a significant thinning of the oceanic crust. Results of the reflection and refraktion seismic as well as the gravity interpretation will be presented.

  4. Hydrological research basins and the environment

    NARCIS (Netherlands)

    1990-01-01

    The International Conference on Hydrological Research Basins and the Environment, was held at Wageningen from September 24th to 28th. The conference was organized by the Committee of the European Network of Experimental and Representative Basins and the National Committee of the Netherlands for the

  5. The karst hydrogeology of upper Ermenek Basin

    International Nuclear Information System (INIS)

    The karst hydrogeology of the Upper Ermenek Basin whose surface area is about 2050 km2 is investigated within the framework of this study. The investigation comprised mainly the study of the characteristics of karstification in the basin and the role of the karstic features on the regional hydrodynamic structure. regional hydrodynamic structure

  6. K-Basin isolation barrier seal

    International Nuclear Information System (INIS)

    This report documents various aspects of the design, analysis, procurement, and fabrication of the hydraulic seal on the isolation barriers to be installed in the 100-K Area spent nuclear fuel basin. The isolation barrier is used to keep water in the basin in the event of an earthquake

  7. HYDROGEOLOGICAL INVESTIGATIONS OF SANDIKLI BASIN (AFYONKARAHISAR)-PRELIMINARY STUDIES

    OpenAIRE

    Seyman Aksever, Arş. Gör. Fatma; Davraz, Doç.Dr.Ayşen; Karagüzel, Prof.Dr.Remzi

    2011-01-01

    ABSTRACT The aims of this research are to determine hydrogeological and hydrogeochemical investigations of Sandıklı (Afyonkarahisar) basin and to plan of optimum groundwater management of the basin. The Sandıklı basin is situated in the west of the Aegean region and discharge to the Büyük Menderes Basin. The research area is occurred from Sandıklı Kuruçay basin and Küçük Sincanlı basin. It has 1556 km2 recharge area. The basin has a semi-closed basin property due to discharge to Kestel Ri...

  8. Basin Fluid Mineralization during Multistage Evolution of the Lanping Sedimentary Basin, Southwestern China

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The Lanping sedimentary basin has experienced a five-stage evolution since the late Paleozoic: ocean-continent transformation (late Paleozoic to early mid-Triassic); intracontinental rift basin (late mid-Triassic to early Jurassic); down-warped basin (middle to late Jurassic); foreland basin (Cretaceous); and strike-slip basin (Cenozoic). Three major genetic types of Ag-Cu polymetailic ore deposits, including the reworked hydrothermal sedimentary, sedimentary-hydrothermally reworked and hydrothermal vein types, are considered to be the products of basin fluid activity at specific sedimentary-tectonic evolutionary stages. Tectonic differences of the different evolutionary stages resulted in considerable discrepancy in the mechanisms of formation-transportation, migration direction and emplacement processes of the basin fluids, thus causing differences in mineralization styles as well as in genetic types of ore deposit.

  9. Genome of crocodilepox virus.

    Science.gov (United States)

    Afonso, C L; Tulman, E R; Delhon, G; Lu, Z; Viljoen, G J; Wallace, D B; Kutish, G F; Rock, D L

    2006-05-01

    Here, we present the genome sequence, with analysis, of a poxvirus infecting Nile crocodiles (Crocodylus niloticus) (crocodilepox virus; CRV). The genome is 190,054 bp (62% G+C) and predicted to contain 173 genes encoding proteins of 53 to 1,941 amino acids. The central genomic region contains genes conserved and generally colinear with those of other chordopoxviruses (ChPVs). CRV is distinct, as the terminal 33-kbp (left) and 13-kbp (right) genomic regions are largely CRV specific, containing 48 unique genes which lack similarity to other poxvirus genes. Notably, CRV also contains 14 unique genes which disrupt ChPV gene colinearity within the central genomic region, including 7 genes encoding GyrB-like ATPase domains similar to those in cellular type IIA DNA topoisomerases, suggestive of novel ATP-dependent functions. The presence of 10 CRV proteins with similarity to components of cellular multisubunit E3 ubiquitin-protein ligase complexes, including 9 proteins containing F-box motifs and F-box-associated regions and a homologue of cellular anaphase-promoting complex subunit 11 (Apc11), suggests that modification of host ubiquitination pathways may be significant for CRV-host cell interaction. CRV encodes a novel complement of proteins potentially involved in DNA replication, including a NAD(+)-dependent DNA ligase and a protein with similarity to both vaccinia virus F16L and prokaryotic serine site-specific resolvase-invertases. CRV lacks genes encoding proteins for nucleotide metabolism. CRV shares notable genomic similarities with molluscum contagiosum virus, including genes found only in these two viruses. Phylogenetic analysis indicates that CRV is quite distinct from other ChPVs, representing a new genus within the subfamily Chordopoxvirinae, and it lacks recognizable homologues of most ChPV genes involved in virulence and host range, including those involving interferon response, intracellular signaling, and host immune response modulation. These data

  10. Towards Metamorphic Virus Recognition Using Eigenviruses

    OpenAIRE

    Saleh, Moustafa

    2012-01-01

    Metamorphic viruses are considered the most dangerous of all computer viruses. Unlike other computer viruses that can be detected statically using static signature technique or dynamically using emulators, metamorphic viruses change their code to avoid such detection techniques. This makes metamorphic viruses a real challenge for computer security researchers. In this thesis, we investigate the techniques used by metamorphic viruses to alter their code, such as trivial code insertion, instruc...

  11. Epigenetic mechanisms in virus-induced tumorigenesis

    OpenAIRE

    Poreba, Elzbieta; Broniarczyk, Justyna Karolina; Gozdzicka-Jozefiak, Anna

    2011-01-01

    About 15–20% of human cancers worldwide have viral etiology. Emerging data clearly indicate that several human DNA and RNA viruses, such as human papillomavirus, Epstein–Barr virus, Kaposi’s sarcoma-associated herpesvirus, hepatitis B virus, hepatitis C virus, and human T-cell lymphotropic virus, contribute to cancer development. Human tumor-associated viruses have evolved multiple molecular mechanisms to disrupt specific cellular pathways to facilitate aberrant replication. Although oncogeni...

  12. Neotectonic of subsiding basins : case of studies from Marañon and Beni basins, Peru and Bolivia

    OpenAIRE

    Dumont, Jean-Francois

    1994-01-01

    Climatic conditions make the fluvial processes very sensitive in the extended flood plain of subandean basins, giving typical morphostructures. Because of high subsidence rate, these basins are case for the understanding of neotectonics in subsiding basins. Recent anciente fluvial traces are used in combination with sub surface structures, neotectonic and seismotectonic data to study the neotectonic evolution of the Peruvian and Bolivian active foreland basins. These basins, the Marañon Basin...

  13. Implementing Integrated River Basin Management in China

    Directory of Open Access Journals (Sweden)

    Lifeng Li

    2010-06-01

    Full Text Available This paper examines the role of the World Wildlife Fund for Nature China as policy entrepreneur in China. It illustrates the ways in which the World Wildlife Fund for Nature is active in promoting integrated river basin management in the Yangtze River basin and how the efforts at basin level are matched with the advice of the China Council for International Cooperation on Environment and Development task force on integrated river basin management to the national government of China. This article demonstrates that the World Wildlife Fund for Nature uses various strategies of different types to support a transition process towards integrated river basin management. Successful deployment of these strategies for change in environmental policy requires special skills, actions, and attitudes on the part of the policy entrepreneur, especially in China, where the government has a dominant role regarding water management and the position of policy entrepeneurs is delicate.

  14. 105-KE basin pilot run relocation

    International Nuclear Information System (INIS)

    The purpose of this document is to present the bases for selecting the exact in-facility location for installation of process equipment to support pilot testing activities in the 105-KE Basin at the United States Department of Energy Hanford Site, in southeastern Washington State. The 105-KE Basin was constructed during the early 1950s, as an integralcomponent of the 105-K East reactor building. Similar basins were provided in all Hanford weapons production reactor buildings to receive fuel elements discharged from the reactors and stage them for rail transport to 200 Area fuel reprocessing plants. The 105-KE reactor began operation in 1955. It was shut down in 1971. However, the 105-KE Basin was reactivated several years later to store spent fuel from the N-Reactor basin and permit its continued operation during outages at the Plutonium Uranium Extraction (PUREX) plant in the 200E Area

  15. K-Basins isolation barriers summary report

    International Nuclear Information System (INIS)

    The purpose of this report is to provide an information summary for the 100-K Area fuel storage basins design change. The design change was made to resolve an unreviewed safety question related to potential water leakage from the basin following a design basis earthquake. The design change consists of installing isolation barriers in the K-East and K-West Basins. The barriers are installed in each basin to isolate the fuel storage portion of the basin from the location of the potential seismic induced leak. The summary represented by this report provides information on the issue, the courses of corrective action, the technical work to support the corrective action, and the fabrication, installation, testing of the isolation barriers

  16. Computer virus information update CIAC-2301

    Energy Technology Data Exchange (ETDEWEB)

    Orvis, W.J.

    1994-01-15

    While CIAC periodically issues bulletins about specific computer viruses, these bulletins do not cover all the computer viruses that affect desktop computers. The purpose of this document is to identify most of the known viruses for the MS-DOS and Macintosh platforms and give an overview of the effects of each virus. The authors also include information on some windows, Atari, and Amiga viruses. This document is revised periodically as new virus information becomes available. This document replaces all earlier versions of the CIAC Computer virus Information Update. The date on the front cover indicates date on which the information in this document was extracted from CIAC`s Virus database.

  17. Sturgeon nucleo-cytoplasmic large DNA virus phylogeny and PCR tests.

    Science.gov (United States)

    Clouthier, Sharon C; VanWalleghem, Elissa; Anderson, Eric D

    2015-12-01

    Sturgeon epitheliotropic nucleo-cytoplasmic large DNA viruses (NCLDVs) can cause a lethal disease of the integumentary system. These viruses have not been assigned to any currently recognized family or genus. In this study, phylogenetic analyses using the major capsid protein (MCP) showed that the sturgeon NCLDVs formed a cohesive taxonomic group, could be identified to the species or possibly sub-species level and formed a distinct evolutionary lineage within the Megavirales. The genetic relatedness of the sturgeon virus MCP allowed design of 3 PCR diagnostic tests with analytical specificity (ASp) inclusive of this group of viruses. The conventional PCR test, C1, had broader ASp than the 2 quantitative PCR tests, Q1 and Q2, and was inclusive of the sturgeon viruses as well as some viruses belonging to the families Mimi-, Phycodna-, or Iridoviridae. Q2 had broader specificity than Q1 but both tests recognized the sturgeon NCLDVs and did not cross-react with co-localizing sturgeon herpesviruses. Analytical test performance characteristics evaluated for Q1 and Q2 revealed sensitive assays with observed 50% limits of detection between 3 and 6.25 plasmid copies and high intra- and inter-assay repeatability. Q1 was used to test for sturgeon viruses in endangered populations of lake sturgeon Acipenser fulvescens within the Winnipeg River or Nelson River drainage systems of Manitoba, Canada. Test results indicated that namao virus is endemic in the Nelson River water basin. These tests meet the analytical requirements for diagnostic testing in Canada and are useful tools for disease management in sturgeon conservation stocking programs in North America. PMID:26648102

  18. Evolution of Computer Virus Concealment and Anti-Virus Techniques: A Short Survey

    OpenAIRE

    Rad, Babak Bashari; Masrom, Maslin; Ibrahim, Suhaimi

    2011-01-01

    This paper presents a general overview on evolution of concealment methods in computer viruses and defensive techniques employed by anti-virus products. In order to stay far from the anti-virus scanners, computer viruses gradually improve their codes to make them invisible. On the other hand, anti-virus technologies continually follow the virus tricks and methodologies to overcome their threats. In this process, anti-virus experts design and develop new methodologies to make them stronger, mo...

  19. Reverse genetics with animal viruses

    International Nuclear Information System (INIS)

    Full text: Reverse genetics of negative-strand RNA viruses (NSV), which allows generation of recombinant viruses entirely from cloned cDNA, has progressed rapidly in the past decade. NSV are a large and diverse group of enveloped viruses of both medical and veterinary importance. They differ widely in morphology, genome structure and host interactions. The first NSV that was completely amenable to genetic manipulation is the neurotropathogenic rabies virus of the rhabdovirus family. In subsequent years, vesicular stomatitis virus and a number of viruses belonging to the family Paramyxoviridae, including viruses causing important animal diseases such as rinderpest virus, canine distemper virus, bovine respiratory syncytial virus, bovine parainfluenza virus and Newcastle disease virus (NDV), succumbed to genetic engineering. The ability to genetically manipulate NSV opens a wide range of possibilities to study the virus biology and develop improved vaccines. Identification and analysis of attenuating mutations using the recombinant system could lead to generation of safe vaccine strains. Introduction of one of the previously studied mutation into an infectious rabies virus (RV) clone by replacing the arginine at position 333 of RV glycoprotein (G-protein) by an aspartic acid resulted in a dramatic attenuation. Combination of this mutation with a deletion that eliminates the interaction between RV P-protein and the cytoplasmic dynein light chain (LC8), which is presumably involved in retrograde transport of RV, further attenuates the rabies virus by 30-fold after intramuscular inoculation. Since extreme attenuation may adversely affect immunogenicity, reverse genetics was used to introduce an additional Gprotein to the step-wise attenuated RV to increase its effectiveness. The resultant recombinant virus may be helpful in developing a highly safe and effective live RV vaccine for oral immunizations of animals. Reverse genetics of NSV has also helped in providing

  20. HTLV-1: ancient virus, new challenges

    Directory of Open Access Journals (Sweden)

    Marzieh Rahimzadegan

    2014-08-01

    Full Text Available Human T-lymphotropic virus (HTLV-1 is an ancient pathogen for human being but arising and recognized recently. The routes of transmission are vertical (mainly by breastfeeding, unsafe sexual contacts and through contaminated blood components specially in whom need frequent and repeated blood transfusions such as permanent anemia due to blood loss in hemophilia and major thalassemia. Patients who should undergo hemodialysis in their lifelong are another instance for increased risk of HTLV-1 exposure. The main HTLV-1-associated diseases are tropical spastic tetraparesis (HAM/TSP, an inflammatory myelopathy and adult T-cell leukemia (ATL. Although HTLV-1 is scattered around the world, only in endemic areas where prevalence rate is more than 1%, viral burden of infection have accumulated. Japan, Southern and Central parts of Africa, Caribbean basin and Iran are examples of endemic areas of HTLV-1. In this article, a rapid and brief review of HTLV-1 virology, immunology and pathogenesis have emerged. In addition, a short debate has driven about current statues of HTLV-1 in Iran.

  1. Zika Virus Infection and Microcephaly

    Directory of Open Access Journals (Sweden)

    J. Gordon Millichap

    2016-03-01

    Full Text Available A Task Force established by the Brazil Ministry of Health investigated the possible association of microcephaly with Zika virus infection during pregnancy and a registry for microcephaly cases among women suspected to have had Zika virus infection during pregnancy.

  2. Are viruses our oldest ancestors?

    OpenAIRE

    Moelling, Karin

    2012-01-01

    We tend to regard viruses only as pathogens and thereby dismiss their crucial importance for the evolution of life. Viruses were not only the probable precursors of the first cells, but they have helped to shape and build the genomes of all species, including humans.

  3. Zika Virus Infection and Microcephaly.

    Science.gov (United States)

    Millichap, J Gordon

    2016-01-01

    A Task Force established by the Brazil Ministry of Health investigated the possible association of microcephaly with Zika virus infection during pregnancy and a registry for microcephaly cases among women suspected to have had Zika virus infection during pregnancy. PMID:27004142

  4. Delaware Basin Monitoring Annual Report

    Energy Technology Data Exchange (ETDEWEB)

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2003-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  5. Delaware Basin Monitoring Annual Report

    International Nuclear Information System (INIS)

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  6. El virus del zika

    OpenAIRE

    Sáez García, Cristina

    2016-01-01

    El propósito de este trabajo es hacer una revisión sobre los datos conocidos actualmente relacionados con la infección por el virus Zika y sus consecuencias a nivel neurológico en el desarrollo fetal. La prevención se vuelve esencial contra esta enfermedad: Al no existir vacuna disponible, la actuación debe centrarse en evitar la picadura del mosquito, especialmente aquellas mujeres embarazadas. Las cifras actuales de infectados, y las de bebés nacidos con microcefalia resultan...

  7. Genome of Crocodilepox Virus

    OpenAIRE

    Afonso, C. L.; Tulman, E. R.; Delhon, G.; Lu, Z.; Viljoen, G. J.; Wallace, D. B.; Kutish, G. F.; Rock, D. L.

    2006-01-01

    Here, we present the genome sequence, with analysis, of a poxvirus infecting Nile crocodiles (Crocodylus niloticus) (crocodilepox virus; CRV). The genome is 190,054 bp (62% G+C) and predicted to contain 173 genes encoding proteins of 53 to 1,941 amino acids. The central genomic region contains genes conserved and generally colinear with those of other chordopoxviruses (ChPVs). CRV is distinct, as the terminal 33-kbp (left) and 13-kbp (right) genomic regions are largely CRV specific, containin...

  8. Tenosinovitis por virus Chikungunya

    OpenAIRE

    Alfredo Seijo; Victoria Luppo; Alejandra Morales; Elisa Gancedo; Yamila Romer; Jorge Correa; Gladys Poustis; Sergio Giamperetti; Cintia Fabbri; Delia Enría

    2014-01-01

    Se presenta a la consulta un hombre proveniente de la República Dominicana con una tenosinovitis del extensor del dedo medio derecho; en la convalecencia inmediata, segunda curva febril luego de 48 horas de permanecer asintomático de una enfermedad febril aguda, y marcada astenia, exantema pruriginoso, poliartralgias con impotencia funcional y rigidez articular generalizada. Los exámenes bioquímicos no aportaron datos de interés para el diagnóstico. La serología para virus dengue fue negativa...

  9. Feline immunodeficiency virus infection.

    Science.gov (United States)

    Pedersen, N C; Yamamoto, J K; Ishida, T; Hansen, H

    1989-05-01

    Feline immunodeficiency virus (FIV) (formerly feline T-lymphotropic lentivirus or FTLV) was first isolated from a group of cats in Petaluma, California in 1986. The virus is a typical lentivirus in gross and structural morphology. It replicates preferentially but not exclusively in feline T-lymphoblastoid cells, where it causes a characteristic cytopathic effect. The major structural proteins are 10, 17 (small gag), 28 (major core), 31 (endonuclease?), 41 (transmembrane?), 52 (core precursor polyprotein), 54/62 (reverse transcriptase?), and 110/130 (major envelope) kilodaltons in size. The various proteins are antigenically distinguishable from those of other lentiviruses, although serum from EIAV-infected horses will cross-react with some FIV antigens. Kittens experimentally infected with FIV manifest a transient (several days to 2 weeks) fever and neutropenia beginning 4 to 8 weeks after inoculation. This is associated with a generalized lymphadenopathy that persists for up to 9 months. Most cats recover from this initial phase of the disease and become lifelong carriers of the virus. Complete recovery does not occur to any extent in nature or in the laboratory setting. One experimentally infected cat died from a myeloproliferative disorder several months after infection. The terminal AIDS-like phase of the illness has been seen mainly in naturally infected cats. It appears a year or more following the initial infection in an unknown proportion of infected animals. FIV has been identified in cats from all parts of the world. It is most prevalent in high density populations of free roaming cats (feral and pet), and is very uncommon in closed purebred catteries. Male cats are twice as likely to become infected as females. Older male cats adopted as feral or stray animals are at the highest risk of infection, therefore. The infection rate among freely roaming cats rises throughout life, and reaches levels ranging from less than 1% to 12% or more depending on the

  10. Sunshine virus in Australian pythons.

    Science.gov (United States)

    Hyndman, Timothy H; Shilton, Cathy M; Doneley, Robert J T; Nicholls, Philip K

    2012-12-28

    Sunshine virus is a recently discovered novel paramyxovirus that is associated with illness in snakes. It does not phylogenetically cluster within either of the two currently accepted paramyxoviral subfamilies. It is therefore only distantly related to the only other known genus of reptilian paramyxoviruses, Ferlavirus, which clusters within the Paramyxovirinae subfamily. Clinical and diagnostic aspects associated with Sunshine virus are as yet undescribed. The objective of this paper was to report the clinical presentation, virus isolation, PCR testing and pathology associated with Sunshine virus infection. Clinical records and samples from naturally occurring cases were obtained from two captive snake collections and the archives of a veterinary diagnostic laboratory. The clinical signs that are associated with Sunshine virus infection are localised to the neurorespiratory systems or are non-specific (e.g. lethargy, inappetence). Out of 15 snakes that were infected with Sunshine virus (detected in any organ by either virus isolation or PCR), the virus was isolated from four out of ten (4/10) sampled brains, 3/10 sampled lungs and 2/7 pooled samples of kidney and liver. In these same 15 snakes, PCR was able to successfully detect Sunshine virus in fresh-frozen brain (11/11), kidney (7/8), lung (8/11) and liver (5/8); and various formalin-fixed paraffin-embedded tissues (7/8). During a natural outbreak of Sunshine virus in a collection of 32 snakes, the virus could be detected in five out of 39 combined oral-cloacal swabs that were collected from 23 of these snakes over a 105 day period. All snakes that were infected with Sunshine virus were negative for reovirus and ferlavirus by PCR. Snakes infected with Sunshine virus reliably exhibited hindbrain white matter spongiosis and gliosis with extension to the surrounding grey matter and neuronal necrosis evident in severe cases. Five out of eight infected snakes also exhibited mild bronchointerstitial pneumonia

  11. Crenarchaeal Viruses: Morphotypes and Genomes,

    DEFF Research Database (Denmark)

    Prangishvili, P.; Basta, P.; Garrett, Roger Antony

    2008-01-01

    not been observed among viruses from the other two domains of life, the Bacteria and the Eukarya. Also the sequences of circular and linear genomes of crenarchaeal viruses are remarkable because the vast majority of predicted genes have no homologs in the public sequence databases. Viruses of the...... demonstrated a simple transcriptional pattern with minimal temporal control. The replication of viral genomes has not been studied experimentally. Nevertheless, some plausible predictions about possible replication strategies could be made based on specific features of several viral genomes. The comparative...... genomics studies revealed that crenarchaeal viruses form a distinctive group, unrelated to any other viruses, with a small pool of shared genes and a unique origin, or more likely, multiple origins....

  12. Giant viruses come of age.

    Science.gov (United States)

    Fischer, Matthias G

    2016-06-01

    Viruses with genomes up to a few megabases in length are a common occurrence in nature, even though they have escaped our notice until recently. These giant viruses infect mainly single-celled eukaryotes and isolation efforts concentrating on amoebal hosts alone have spawned hundreds of viral isolates, featuring viruses with previously unseen virion morphologies and the largest known viral genomes and particles. One of the challenges that lie ahead is to analyze and categorize the available data and to establish an approved classification system that reflects the evolutionary relationships and biological properties of these viruses. Extensive sampling of Acanthamoeba-infecting mimiviruses and initial characterization of their virophage parasites have provided a first blueprint of the genetic diversity and composition of a giant virus clade that will facilitate the taxonomic grouping of these fascinating microorganisms. PMID:26999382

  13. Epidemiology of West Nile Disease in Europe and in the Mediterranean Basin from 2009 to 2013

    Directory of Open Access Journals (Sweden)

    Daria Di Sabatino

    2014-01-01

    Full Text Available West Nile virus (WNV transmission has been confirmed in the last four years in Europe and in the Mediterranean Basin. An increasing concern towards West Nile disease (WND has been observed due to the high number of human and animal cases reported in these areas confirming the importance of this zoonosis. A new epidemiological scenario is currently emerging: although new introductions of the virus from abroad are always possible, confirming the epidemiological role played by migratory birds, the infection endemisation in some European territories today is a reality supported by the constant reoccurrence of the same strains across years in the same geographical areas. Despite the WND reoccurrence in the Old World, the overwintering mechanisms are not well known, and the role of local resident birds or mosquitoes in this context is poorly understood. A recent new epidemiological scenario is the spread of lineage 2 strain across European and Mediterranean countries in regions where lineage 1 strain is still circulating creating favourable conditions for genetic reassortments and emergence of new strains. This paper summarizes the main epidemiological findings on WNV occurrence in Europe and in the Mediterranean Basin from 2009 to 2013, considering potential future spread patterns.

  14. Groundwater Mounding Beneath Stormwater Infiltration Basins

    Science.gov (United States)

    Nimmer, M.; Thompson, A. M.; Misra, D.

    2007-12-01

    An accurate understanding of groundwater mound formation is important in the proper design of stormwater infiltration basins since these basins are often required to recharge a portion of pre-development infiltration volume. Mound formation due to localized recharge may reduce the infiltration rate of the basin and the ability of the soil to filter pollutants. The goal of this research was to understand groundwater mounding and the potential for contaminant transport resulting from recharge beneath stormwater infiltration basins. A 0.10 ha infiltration basin serving a 9.4 ha residential subdivision in Oconomowoc, Wisconsin was used in this study. Subsurface conditions included sand and gravel material and a groundwater table at 2.3 m below grade. Three storm events, 4.9 cm, 2.8 cm, and 4.3 cm, between August 2006 and April 2007 were modeled using the two-dimensional numerical model HYDRUS. The calibrated model was used to evaluate hypothetical basin operation scenarios for various basin sizes, soil types, ponding depths, and water table depths. The groundwater mound intersected the basin floor in most scenarios with loamy sand and sandy loam soils, an unsaturated thickness of 1.52 m, and a ponding depth of 0.61 m. No groundwater table response was observed with ponding depths less than 0.31 m with an unsaturated zone thickness of 6.09 m. The mound height was most sensitive to hydraulic conductivity and unsaturated zone thickness. A 7.6 cm sediment layer delayed the time to reach maximum mound height, but had a minimal effect on the magnitude of the mound. Mound heights increased as infiltration basin size increased.

  15. Radionuclides in the Great Lakes basin.

    OpenAIRE

    Ahier, B A; Tracy, B L

    1995-01-01

    The Great Lakes basin is of radiologic interest due to the large population within its boundaries that may be exposed to various sources of ionizing radiation. Specific radionuclides of interest in the basin arising from natural and artificial sources include 3H, 14C, 90Sr, 129I, 131I, 137Cs, 222Rn, 226Ra, 235U, 238U, 239Pu, and 241Am. The greatest contribution to total radiation exposure is the natural background radiation that provides an average dose of about 2.6 mSv/year to all basin resi...

  16. K Basins isolation barriers summary report

    Energy Technology Data Exchange (ETDEWEB)

    Strickland, G.C., Westinghouse Hanford

    1996-07-31

    The 105-K East and 105-K West fuel storage basins (105-K Basins) were designed and constructed in the early 1950`s for interim storage of irradiated fuel following its discharge from the reactors. The 105-K- East and 105-K West reactor buildings were constructed first, and the associated storage basins were added about a year later. The construction joint between each reactor building structure and the basin structure included a flexible membrane waterstop to prevent leakage. Water in the storage basins provided both radiation shielding and cooling to remove decay heat from stored fuel until its transfer to the Plutonium Uranium Extraction (PUREX) Facility for chemical processing. The 105-K West Reactor was permanently shut down in February 1970; the 105-K East Reactor was permanently shut down in February 1971. Except for a few loose pieces, fuel stored in the basins at that time was shipped to the PUREX Facility for processing. The basins were then left idle but were kept filled with water. The PUREX Facility was shut down and placed on wet standby in 1972 while N Reactor continued to operate. When the N Reactor fuel storage basin began to approach storage capacity, the decision was made to modify the fuel storage basins at 105-K East and 105-K West to provide additional storage capacity. Both basins were subsequently modified (105-K East in 1975 and 105-K West in 1981) to provide for the interim handling and storage of irradiated N Reactor fuel. The PUREX Facility was restarted in November 1983 to provide 1698 additional weapons-grade plutonium for the United States defense mission. The facility was shut down and deactivated in December 1992 when the U.S. Department of Energy (DOE) determined that the plant was no longer needed to support weapons-grade plutonium production. When the PUREX Facility was shut down, approximately 2.1 x 1 06 kg (2,100 metric tons) of irradiated fuel aged 7 to 23 years was left in storage in the 105-K Basins pending a decision on

  17. China's Qaidam Basin Sensitive to Global Warming

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    @@ Chinese meteorologists recently pointed out that the temperatures in northwest China's resource-rich Qaidam Basin are rising faster than the rest of the country as a result of climate change.The rapid rise in temperatures is likely to increase the long-term frequency of droughts and farming pests in the basin to the northeast of the Qinghai-Tibet Plateau.Qaidam Basin covers 250,000 km2 in Qinghai Province and is known as resource-rich with salt lakes,petroleum,natural gas and other abundant mineral resources.

  18. Basins of Attraction for Chimera States

    DEFF Research Database (Denmark)

    Martens, Erik Andreas; Panaggio, Mark; Abrams, Daniel

    2016-01-01

    Chimera states---curious symmetry-broken states in systems of identical coupled oscillators---typically occur only for certain initial conditions. Here we analyze their basins of attraction in a simple system comprised of two populations. Using perturbative analysis and numerical simulation we...... evaluate asymptotic states and associated destination maps, and demonstrate that basins form a complex twisting structure in phase space. Understanding the basins' precise nature may help in the development of control methods to switch between chimera patterns, with possible technological and neural system...

  19. Waste storage potential of Triassic basins in southeast United States

    Energy Technology Data Exchange (ETDEWEB)

    Weaver, C.E.

    1976-07-01

    Triassic basins, elongated deep basins filled with sediments, extend from Nova Scotia to Florida. The geology of the basins is discussed for each state. Their potential for liquid waste storage is assessed. Seismic risk is among the factors evaluated. It is recommended that the shallow Triassic Florence basin in northeast South Carolina be studied. 10 fig. (DLC)

  20. Western Gas Sands Project. Quarterly Basin Activities Report

    Energy Technology Data Exchange (ETDEWEB)

    Atkinson, C H

    1979-01-31

    This report is a summation of 3 months' drilling and testing activities in the four primary WGSP study areas: Greater Green River Basin, Northern Great Plains Province, Piceance Basin, and Uinta Basin. The monitoring of basin activities is part of resource assessment. (DLC)

  1. K Basins Groundwater Monitoring Task, K Basins Closure Project: Report for April, May, and June 2007

    Energy Technology Data Exchange (ETDEWEB)

    Peterson, Robert E.

    2007-08-08

    This report provides information on groundwater monitoring near the K Basins during April, May, and June 2007. Conditions remained similar to those reported in the previous quarter’s report, with no evidence in monitoring results to suggest groundwater impact from current loss of shielding water from either basin to the ground. During the current quarter, the first results from two new wells installed between KE Basin and the river became available. Groundwater conditions at each new well are reasonably consistent with adjacent wells and expectations, with the exception of anomalously high chromium concentrations at one of the new wells. The K Basins monitoring network will be modified for FY 2008 to take advantage of new wells recently installed near KW Basin as part of a pump-and-treat system for chromium contamination, and also the new wells recently installed between the KE Basin and the river, which augment long-term monitoring capability in that area.

  2. Co-infections with Chikungunya Virus and Dengue Virus in Delhi, India

    OpenAIRE

    Chahar, Harendra S; Bharaj, Preeti; Dar, Lalit; Guleria, Randeep; Kabra, Sushil K; Broor, Shobha

    2009-01-01

    Aedes aegypti mosquitoes are common vectors for dengue virus and chikungunya virus. In areas where both viruses cocirculate, they can be transmitted together. During a dengue outbreak in Delhi in 2006, 17 of 69 serum samples were positive for chikungunya virus by reverse transcription–PCR; 6 samples were positive for both viruses.

  3. Ebola Virus Antibodies in Fruit Bats, Bangladesh

    OpenAIRE

    Kevin J Olival; Islam, Ariful; YU, Meng; Anthony, Simon J.; Epstein, Jonathan H.; Khan, Shahneaz Ali; Khan, Salah Uddin; Crameri, Gary; Wang, Lin-Fa; Lipkin, W. Ian; Luby, Stephen P.; Daszak, Peter

    2013-01-01

    To determine geographic range for Ebola virus, we tested 276 bats in Bangladesh. Five (3.5%) bats were positive for antibodies against Ebola Zaire and Reston viruses; no virus was detected by PCR. These bats might be a reservoir for Ebola or Ebola-like viruses, and extend the range of filoviruses to mainland Asia.

  4. Advanced Metamorphic Techniques in Computer Viruses

    OpenAIRE

    Beaucamps, Philippe

    2007-01-01

    Nowadays viruses use polymorphic techniques to mutate their code on each replication, thus evading detection by antiviruses. However detection by emulation can defeat simple polymorphism: thus metamorphic techniques are used which thoroughly change the viral code, even after decryption. We briefly detail this evolution of virus protection techniques against detection and then study the MetaPHOR virus, today's most advanced metamorphic virus.

  5. Multi-National River Basin Cooperation and Management Case Study: Senegal River Basin

    OpenAIRE

    Ayaa, Patricia

    2012-01-01

    With increasing populations, urbanization and thus increasing demand for water, conflict on International River basins has been increasing over the years which has necessitated formation of International River frameworks to devise means of cooperation among the countries sharing the river basins. The main modes of cooperation in international river basins include allocating the waters of the river to the sharing countries such that each country manages its own water resources, or treating the...

  6. Modelling depositional shifts between sedimentary basins: Sediment pathways in Paratethys basins during the Messinian Salinity Crisis

    OpenAIRE

    J. Bartol; L. Matenco; D. Garcia-Castellanos; K. Leever

    2012-01-01

    The evolution of sedimentary basins separated by uplifted topographic barriers is characterised by gradual regressive deposition until one of the basins is filled and its sedimentation bypasses to the adjacent basin, defining a depositional shift. One of the critical parameters controlling these depositional shifts is sea level variation, its drop potentially triggering a depositional shift by cancelling the available accommodation space. Conversely, a sea level rise can create new accommodat...

  7. Structural Architecture and Evolution of Kumkuli Basin, North Tibet

    Institute of Scientific and Technical Information of China (English)

    He Bizhu; Xu Zhiqin; Jiao Cunli; Cui Junwen; Wang Shenglang; Wang Gonghuai; Li Zhaoyang; Qiu Zhuli

    2009-01-01

    Utilizing the new data of gravity, magnetic, and magnetotelluric survey, we analyzed the characteristics of the three geophysical attribute (gravity, magnetic, and resistivity) interfaces and the deep architecture and structure of Kumkuli basin. The research results can provide basic data for early basin structural study. From coupled basin and mountain system, analysis of the structure, and evolution of Knmknli basin, we found that there was zoning from north to south and from west to east. Kumkuli basin has three structural architecture layers including metamorphic crystallization basement, fold basement and sedimentary cover. Knmkuli basin can be divided into three structural units, two depressions, and one uplift. Structural evolution of the Kumkuli basin can be divided into five evolution stages, including Kumkuli microcontinent formed in Sinian-Ordovician, suture around Kumkuli basin formed in Eopaleozoic, retroarc foreland basin formed in Neopaleozoic, rejuvenated foreland hasin developed in Mesozoic, and strike slip and compression basin developed in Cenozoic.

  8. The IFITMs Inhibit Zika Virus Replication.

    Science.gov (United States)

    Savidis, George; Perreira, Jill M; Portmann, Jocelyn M; Meraner, Paul; Guo, Zhiru; Green, Sharone; Brass, Abraham L

    2016-06-14

    Zika virus has emerged as a severe health threat with a rapidly expanding range. The IFITM family of restriction factors inhibits the replication of a broad range of viruses, including the closely related flaviruses West Nile virus and dengue virus. Here, we show that IFITM1 and IFITM3 inhibit Zika virus infection early in the viral life cycle. Moreover, IFITM3 can prevent Zika-virus-induced cell death. These results suggest that strategies to boost the actions and/or levels of the IFITMs might be useful for inhibiting a broad range of emerging viruses. PMID:27268505

  9. The IFITMs Inhibit Zika Virus Replication

    Directory of Open Access Journals (Sweden)

    George Savidis

    2016-06-01

    Full Text Available Zika virus has emerged as a severe health threat with a rapidly expanding range. The IFITM family of restriction factors inhibits the replication of a broad range of viruses, including the closely related flaviruses West Nile virus and dengue virus. Here, we show that IFITM1 and IFITM3 inhibit Zika virus infection early in the viral life cycle. Moreover, IFITM3 can prevent Zika-virus-induced cell death. These results suggest that strategies to boost the actions and/or levels of the IFITMs might be useful for inhibiting a broad range of emerging viruses.

  10. Comparison between control factors of high quality continental reservoirs in Bohai Bay basin and Ordos basin

    Institute of Scientific and Technical Information of China (English)

    Junmao ZHENG; Jun YOU; Dongbo HE

    2008-01-01

    Bohai Bay basin,a typical extensional rift basin,and Ordos basin,an intra-craton down-warped basin,represent two important basin types in China.Because of their respective features,the main control factors for their high quality reservoirs are different.In Bohai Bay basin,the sandbody shows great variety in types and severely separated distribution and its high quality reservoirs are mostly controlled by the vertical secondary pore and vertical abnormal pressure.On the other hand,the sandbody in Ordos basin features a relative lack of variety,good continuity,indistinct vertical zone,and its reservoirs are mainly controlled bY the diagenetic differentiation caused by different sedimentation inside the sandbody.Therefore,in the Bohai Bay basin,the exploration should be based on the analysis of sedimentary facies and the favorable diagenefic zones and formations.The focus in Ordos basin,however,should be put on the relatively high permeability sandstones in a generally low permeable sandstone background.

  11. Hanford Reach - Snively Basin Rye Field Rehabilitation

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Snively Basin area of the Arid Lands Ecology Reserve within the Hanford Reach National Monument was historically used to farm cereal rye (Secale cereale), among...

  12. Gulf Coast Basins and Uplifts [gcstructsg

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — These data provide generalized outlines of major basins and uplifts in the Gulf Coast region modified after Plate 2, Principal structural features, Gulf of Mexico...

  13. KE Basin water dispositioning engineering study

    International Nuclear Information System (INIS)

    This engineering study is a feasibility study of KE Basin water treatment to an acceptable level and dispositioning the treated water to Columbia River, ground through ETF or to air through evaporation

  14. USGS Streamgage NHDPlus Version 1 Basins 2011

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This dataset represents 19,031 basin boundaries and their streamgage locations for the U.S. Geological Survey's (USGS) active and historical streamgages from the...

  15. K-Basins S/RIDS

    Energy Technology Data Exchange (ETDEWEB)

    Watson, D.J.

    1997-08-01

    The Standards/Requirements Identification Document (S/RID) is a list of the Environmental, Safety, and Health (ES{ampersand}H) and Safeguards and Security (SAS) standards/requirements applicable to the K Basins facility.

  16. 183-H Basin sludge treatability test report

    International Nuclear Information System (INIS)

    This document presents the results from the treatability testing of a 1-kg sample of 183-H Basin sludge. Compressive strength measurements, Toxic Characteristic Leach Procedure, and a modified ANSI 16.1 leach test were conducted

  17. Overflow of Radioactive Water from K Basins

    International Nuclear Information System (INIS)

    This report documents the dose calculations for the postulated K Basin overflow accident using current methods to model the environmental doses for radioactive releases into the Columbia River and the air

  18. K-Basins S/RIDS

    Energy Technology Data Exchange (ETDEWEB)

    Watson, D.J.

    1995-09-22

    The Standards/Requirements Identification Document(S/RID) is a list of the Environmental, Safety, and Health (ES&H) and Safeguards and Security (SAS) standards/requirements applicable to the K Basins facility

  19. K-Basins S/RIDS

    International Nuclear Information System (INIS)

    The Standards/Requirements Identification Document (S/RID) is a list of the Environmental, Safety, and Health (ES(ampersand)H) and Safeguards and Security (SAS) standards/requirements applicable to the K Basins facility

  20. Cretaceous Onlap, Gulf of Mexico Basin [cretonlapg

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The maximum extent of Cretaceous onlap is generalized from Plate 3, Structure at the base and subcrop below Mesozoic marine section, Gulf of Mexico Basin (compiled...

  1. Klamath Basin Water Rights Place of Use

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Hydrological Information Products for the Off-Project Water Program of the Klamath Basin Restoration Agreement U.S. Geological Survey Open-File Report 2012-1199...

  2. River Basin Standards Interoperability Pilot

    Science.gov (United States)

    Pesquer, Lluís; Masó, Joan; Stasch, Christoph

    2016-04-01

    There is a lot of water information and tools in Europe to be applied in the river basin management but fragmentation and a lack of coordination between countries still exists. The European Commission and the member states have financed several research and innovation projects in support of the Water Framework Directive. Only a few of them are using the recently emerging hydrological standards, such as the OGC WaterML 2.0. WaterInnEU is a Horizon 2020 project focused on creating a marketplace to enhance the exploitation of EU funded ICT models, tools, protocols and policy briefs related to water and to establish suitable conditions for new market opportunities based on these offerings. One of WaterInnEU's main goals is to assess the level of standardization and interoperability of these outcomes as a mechanism to integrate ICT-based tools, incorporate open data platforms and generate a palette of interchangeable components that are able to use the water data emerging from the recently proposed open data sharing processes and data models stimulated by initiatives such as the INSPIRE directive. As part of the standardization and interoperability activities in the project, the authors are designing an experiment (RIBASE, the present work) to demonstrate how current ICT-based tools and water data can work in combination with geospatial web services in the Scheldt river basin. The main structure of this experiment, that is the core of the present work, is composed by the following steps: - Extraction of information from river gauges data in OGC WaterML 2.0 format using SOS services (preferably compliant to the OGC SOS 2.0 Hydrology Profile Best Practice). - Model floods using a WPS 2.0, WaterML 2.0 data and weather forecast models as input. - Evaluation of the applicability of Sensor Notification Services in water emergencies. - Open distribution of the input and output data as OGC web services WaterML, / WCS / WFS and with visualization utilities: WMS. The architecture

  3. Defective interfering particles of Sindbis virus do not interfere with the homologous virus obtained from persistently infected BHK cells but do interfere with Semliki Forest virus.

    OpenAIRE

    Weiss, B; Schlesinger, S

    1981-01-01

    Defective interfering particles derived from wild-type Sindbis virus no longer interfere with the infectious virus cloned from BHK cells persistently infected with Sindbis virus for 16 months. These particles do interfere with the replication of Semliki Forest virus.

  4. Basin development and petroleum prospects of central New Hebrides arc

    Energy Technology Data Exchange (ETDEWEB)

    Greene, H.G.; Wong, F.L.; Falvey, D.A.; MacFarlane, A.

    1986-07-01

    Two extensive intra-arc basins, the Central basin of Vanuatu and the Vanikolo basin, have recently been mapped in detail and appear to have developed in the last 3 m.y. primarily from subduction and arc-polarity reversal. The Central basin of Vanuatu is being modified by the ridge-arc collision and is still accumulating sediment, whereas the Vanikolo basin has no physiographic expression and is completely filled with sediment. Quaternary volcanism has separated the Central basin of Vanuatu into two physiographic basins (North Aoba and South Aoba basins). The Central basin is flanked on the west by five smaller insular basins associated with the islands of Malakula and Espiritu Santo. Although North and South Aoba basins lie in water depths as great as 3 km, migration paths into the shallower water basins appear to be present, and structures that could trap hydrocarbons occur. More than 5 km of sediment of Miocene and younger age were deposited in the deeper basins, whereas 2-km thick sediments of late Miocene and younger age occur near the islands. The most promising hydrocarbon basin is Malakula basin, which lies on the eastern shelf of Malakula Island, where onshore source rock analyses indicated potential gas concentrations. North of the Central basin of Vanuatu lies the largest basin in the region, the Vanikolo basin, covering more than 14,000 km/sup 2/ and containing more than 6 km of probablen Miocene and younger sediment. Water depths are more than 2 km in the deepest part of this basin, but much of the margins lie in water less than 1 km deep. Structures along the margins could trap hydrocarbons, especially along the western side, and are accessible to drilling. More work must be done in Vanikolo basin to assess hydrocarbon source rocks, migration, and heat flow before a comprehensive hydrocarbon evaluation can be made.

  5. Petroleum Exploration Prospects in Erlian Basin,China

    Institute of Scientific and Technical Information of China (English)

    Fei Baosheng

    1994-01-01

    @@ Erlian Basin is located in the middle prairie,Inner Mongolia Autonomous Region, the north border of China. Teetonieally, Erlian Basin is to the south of Bayinbaoligel Uplift and the north is the Wendouer Temple Uplift. In the east of the basin, there is Daxinganling Uplift and the west is Soulunshan Uplift. The basin covered an area of 100 000 km2, is a Mesozoic Cenozoic graben (rift)basin that evolved on the folded basement of Heveynian geosyncline.

  6. Oncolytic virus therapy for cancer

    Directory of Open Access Journals (Sweden)

    Goldufsky J

    2013-09-01

    Full Text Available Joe Goldufsky,1 Shanthi Sivendran,3 Sara Harcharik,4 Michael Pan,4 Sebastian Bernardo,4 Richard H Stern,5 Philip Friedlander,4 Carl E Ruby,1,2 Yvonne Saenger,4 Howard L Kaufman1,2 Departments of 1Immunology & Microbiology and 2Surgery, Rush University Medical Center, Chicago IL, USA 3Hematology/Oncology Medical Specialists, Lancaster General Health, Lancaster, PA, USA, and Departments of 4Medical Oncology and 5Radiology, Tisch Cancer Institute, The Mount Sinai School of Medicine, New York, NY, USA Abstract: The use of oncolytic viruses to treat cancer is based on the selection of tropic tumor viruses or the generation of replication selective vectors that can either directly kill infected tumor cells or increase their susceptibility to cell death and apoptosis through additional exposure to radiation or chemotherapy. In addition, viral vectors can be modified to promote more potent tumor cell death, improve the toxicity profile, and/or generate host antitumor immunity. A variety of viruses have been developed as oncolytic therapeutics, including adenovirus, vaccinia virus, herpesvirus, coxsackie A virus, Newcastle disease virus, and reovirus. The clinical development of oncolytic viral therapy has accelerated in the last few years, with several vectors entering clinical trials for a variety of cancers. In this review, current strategies to optimize the therapeutic effectiveness and safety of the major oncolytic viruses are discussed, and a summary of current clinical trials is provided. Further investigation is needed to characterize better the clinical impact of oncolytic viruses, but there are increasing data demonstrating the potential promise of this approach for the treatment of human and animal cancers. Keywords: cancer, gene therapy, oncolytic therapy, virus, treatment

  7. Microbiology of spent nuclear fuel storage basins.

    Science.gov (United States)

    Santo Domingo, J W; Berry, C J; Summer, M; Fliermans, C B

    1998-12-01

    Microbiological studies of spent nuclear fuel storage basins at Savannah River Site (SRS) were performed as a preliminary step to elucidate the potential for microbial-influenced corrosion (MIC) in these facilities. Total direct counts and culturable counts performed during a 2-year period indicated microbial densities of 10(4) to 10(7) cells/ml in water samples and on submerged metal coupons collected from these basins. Bacterial communities present in the basin transformed between 15% and 89% of the compounds present in Biologtrade mark plates. Additionally, the presence of several biocorrosion-relevant microbial groups (i.e., sulfate-reducing bacteria and acid-producing bacteria) was detected with commercially available test kits. Scanning electron microscopy and X-ray spectra analysis of osmium tetroxide-stained coupons demonstrated the development of microbial biofilm communities on some metal coupons submerged for 3 weeks in storage basins. After 12 months, coupons were fully covered by biofilms, with some deterioration of the coupon surface evident at the microscopical level. These results suggest that, despite the oligotrophic and radiological environment of the SRS storage basins and the active water deionization treatments commonly applied to prevent electrochemical corrosion in these facilities, these conditions do not prevent microbial colonization and survival. Such microbial densities and wide diversity of carbon source utilization reflect the ability of the microbial populations to adapt to these environments. The presumptive presence of sulfate-reducing bacteria and acid-producing bacteria and the development of biofilms on submerged coupons indicated that an environment for MIC of metal components in the storage basins may occur. However, to date, there has been no indication or evidence of MIC in the basins. Basin chemistry control and corrosion surveillance programs instituted several years ago have substantially abated all corrosion mechanisms

  8. Comprehensive analysis of sustainable flood retention basins

    OpenAIRE

    Yang, Qinli

    2011-01-01

    To adapt to climate change which results in increasing flood frequency and intensity, the European Community has proposed Flood Directive 2007/60/EC. It requires member states to conduct risk assessments of all river basins and coastal areas and to establish Flood Risk Management Plans focused on prevention, protection and preparedness by 2015. Sustainable Flood Retention Basins (SFRB) that impound water are a new concept that arose in 2006. They can have a pre-defined or po...

  9. Geo-economy of the Caspian basin

    International Nuclear Information System (INIS)

    The Caspian area is essential for the development of the central Asia countries and Caucasus. Excepted the Iran and the Russia, these areas economy is poor. The hydrocarbons exploitation should reinforce the economic weight of these States. The author analyzes the Caspian area economies and shows that the basin economies are confronted with three handicaps, and that even with different economic ways, the soviet economic system is still present in the basin. (A.L.B.)

  10. ALLUVIUM RUNOFF STUDY IN GILORT HYDROGRAPHIC BASIN

    Directory of Open Access Journals (Sweden)

    GRIGORE CIOCĂZAN

    2012-04-01

    Full Text Available The study aims the characterization of the solid runoff in the Gilort hydrographic basin, analyzing the variations in time (for the period 1982-2007 and in space (for the three major relief units in the basin of this parameter. The data came from the three hydrometric stations where are performed the measurements for the alluvium runoff: Ciocadia, Târgu-Cărbuneşti (Gilort river and Turburea.

  11. THE RIVER BASIN APPROACH IN TOURISM PLANNING

    OpenAIRE

    Slara, Agita

    2005-01-01

    The article describes advantages and disadvantages in tourism planning, using the river basins as background territory and borders. Tourism development planning is taking place according administrative territorial borders till nowadays in Latvia and in other tourism destinations in abroad. According tourist and visitor needs and environmental friendly approach it is more appropriate to use river basins in tourism planning. Tourists are not interested in administrative borders, but in qualitat...

  12. A new looming of Zika virus

    OpenAIRE

    Nirav R. Soni

    2016-01-01

    Zika virus (ZIKV) is a member of the virus family Flaviviridae and the genus Flavivirus, transmitted by daytime-active Aedes mosquitoes, such as A. aegypti. ZIKV will continue to spread and it will be difficult to determine how the virus will spread over time. Sign and symptoms of ZIKAVD (Zika virus disease) were conjunctivitis (red eyes), back pain, birth defect-abnormal brain development known as microcephaly and it is diagnosed through PCR (polymerase chain reaction) and virus isolation fr...

  13. Towards the Epidemiological Modeling of Computer Viruses

    OpenAIRE

    Xiaofan Yang; Lu-Xing Yang

    2012-01-01

    Epidemic dynamics of computer viruses is an emerging discipline aiming to understand the way that computer viruses spread on networks. This paper is intended to establish a series of rational epidemic models of computer viruses. First, a close inspection of some common characteristics shared by all typical computer viruses clearly reveals the flaws of previous models. Then, a generic epidemic model of viruses, which is named as the SLBS model, is proposed. Finally, diverse generalizations of ...

  14. Virus-membrane interactions: spectroscopic studies.

    OpenAIRE

    Datema, K.P.

    1987-01-01

    In this thesis some new aspects of the infection process of nonenveloped viruses are reported. The interaction of a rod-shaped (TMV) and three spherical (CCMV, BMV, SBMV) plant viruses, of the filamentous bacteriophage M13, and of their coat proteins with membranes have been investigated. A comparison is made between the infection mechanisms of these non-enveloped viruses.1 EFFECT OF PLANT VIRUSES ON MEMBRANESAll plant viruses studied interact with membranes. This is demonstrated by turbidity...

  15. Advanced Virus Monitoring and Analysis System

    OpenAIRE

    Fauzi Adi Rafrastara; Faizal M. A.

    2011-01-01

    This research proposed an architecture and a system which able to monitor the virus behavior and classify them as a traditional or polymorphic virus. Preliminary research was conducted to get the current virus behavior and to find the certain parameters which usually used by virus to attack the computer target. Finally, “test bed environment” is used to test our system by releasing the virus in a real environment, and try to capture their behavior, and followed by generating the conclusion th...

  16. Detection of Junk Instructions in Computer Viruses

    OpenAIRE

    2008-01-01

    The techniques employed by viruses to avoid detection by antivirus scanners are becoming increasingly advanced. One technique commonly used by viruses to evade detection is polymorphism. The level of polymorphism in a virus indicates its ability to create different forms of itself. The use of junk instructions is a common technique to increase the level of polymorphism in a virus. Junk instructions are machine code instructions with no other function than to alter the appearance of a virus. J...

  17. Animal viruses, radiation, repair mechanisms, and cancer

    International Nuclear Information System (INIS)

    Effects of radiation on animal viruses are reviewed in terms of repair mechanisms and their possible relationship to virus transformation and carcinogenesis. Repair mechanisms are reviewed under the headings; multiplicity reactivation, photoreactivation, host-cell reactivation (dark repair), and uv reactivation. Other topics discussed are: transformation of cells in vitro by irradiated viruses, oncogenicity of virus-transformed cells in vivo, and possible role of repair mechanisms in virus transformation and oncogenesis

  18. RNA recombination in animal and plant viruses.

    OpenAIRE

    Lai, M M

    1992-01-01

    An increasing number of animal and plant viruses have been shown to undergo RNA-RNA recombination, which is defined as the exchange of genetic information between nonsegmented RNAs. Only some of these viruses have been shown to undergo recombination in experimental infection of tissue culture, animals, and plants. However, a survey of viral RNA structure and sequences suggests that many RNA viruses were derived form homologous or nonhomologous recombination between viruses or between viruses ...

  19. Zika Virus: the Latest Newcomer

    OpenAIRE

    Saiz, Juan-Carlos; Vázquez-Calvo, Ángela; Blázquez, Ana B.; Merino-Ramos, Teresa; Escribano-Romero, Estela; Martín-Acebes, Miguel A.

    2016-01-01

    Since the beginning of this century, humanity has been facing a new emerging, or re-emerging, virus threat almost every year: West Nile, Influenza A, avian flu, dengue, Chikungunya, SARS, MERS, Ebola, and now Zika, the latest newcomer. Zika virus (ZIKV), a flavivirus transmitted by Aedes mosquitoes, was identified in 1947 in a sentinel monkey in Uganda, and later on in humans in Nigeria. The virus was mainly confined to the African continent until it was detected in south-east Asia the 1980’s...

  20. Zika virus: the latest newcomer

    OpenAIRE

    Juan-Carlos eSaiz; Angela eVazquez-Calvo; Ana Belen Blazquez; Teresa eMerino-Ramos; Estela eEscribano-Romero; Martín-Acebes, Miguel A.

    2016-01-01

    Since the beginning of this century, humanity has been facing a new emerging, or re-emerging, virus threat almost every year: West Nile, Influenza A, avian flu, dengue, Chikungunya, SARS, MERS, Ebola, and now Zika, the latest newcomer. Zika virus (ZIKV), a flavivirus transmitted by Aedes mosquitoes, was identified in 1947 in a sentinel monkey in Uganda, and later on in humans in Nigeria. The virus was mainly confined to the African continent until it was detected in south-east Asia the 1980´s...

  1. Marburg Virus Reverse Genetics Systems

    Directory of Open Access Journals (Sweden)

    Kristina Maria Schmidt

    2016-06-01

    Full Text Available The highly pathogenic Marburg virus (MARV is a member of the Filoviridae family and belongs to the group of nonsegmented negative-strand RNA viruses. Reverse genetics systems established for MARV have been used to study various aspects of the viral replication cycle, analyze host responses, image viral infection, and screen for antivirals. This article provides an overview of the currently established MARV reverse genetic systems based on minigenomes, infectious virus-like particles and full-length clones, and the research that has been conducted using these systems.

  2. New insights of Sacbrood virus

    Institute of Scientific and Technical Information of China (English)

    Mingxiao; Ma

    2014-01-01

    <正>Over the last several years,major efforts have been expended to study viral infection of honeybees mainly due to colony losses around the world(Allen M,et al.,1996).It seems that honeybees are infected with numerous viruses mounting to 18so far.Infection may be asymptomatic but could still have adverse effects on the bee and may even cause death resulting in colony collapse.Sacbrood virus(SBV)is the most widely distributed of all honey bee viruses.

  3. Shear-flow transition: the basin boundary

    International Nuclear Information System (INIS)

    The basin of attraction of a stable equilibrium point is investigated for a dynamical system (W97) that has been used to model transition to turbulence in shear flows. The basin boundary contains a linearly unstable equilibrium point Xlb which, in the self-sustaining scenario, plays a role in mediating the transition in that transition orbits cluster around its unstable manifold. However we find—for W97 with canonical parameter values—that this role is played not by Xlb but rather by a periodic orbit also lying on the basin boundary. Moreover, it appears via numerical computations that all orbits beginning near Xlb relaminarize. We offer numerical evidence that the parameter values of W97 are post-critical in the following sense: for some, subcritical parameter values, the basin boundary coincides with the stable manifold of Xlb and only a subset of nearby orbits relaminarize, whereas for supercritical values the basin boundary is the union of two stable manifolds, one belonging to the periodic orbit and dominating the basin boundary, and the other belonging to Xlb and detectable only as edge separating relaminarizing orbits of different characters. The periodic orbit appears at the critical parameter value via a homoclinic connection. This further leads to a proposal for the structure of the 'edge of chaos' somewhat different from that which has previously been proposed

  4. Lunar basin formation and highland stratigraphy

    Science.gov (United States)

    Howard, K. A.; Wilhelms, D. E.; Scott, D. H.

    1974-01-01

    Multiring impact basins, formed after solidification of the lunar crust, account for most or all premare regional deposits and structures expressed in the lunar landscape and for major topographic and gravity variations. A fresh basin has two or more concentric mountain rings, a lineated ejecta blanket, and secondary impact craters. Crackled material on the floor may be impact melt. The ejecta blanket was emplaced at least partly as a ground-hugging flow and was probably hot. A suggested model of basin formation is that the center lifts up and the rings form by inward collapse during evisceration. The resulting basin is shallow and has a central uplift of the mantle. This results in a central gravity high and a ring low. Later flooding by mare basalt has since modified most near side basins. Highland deposits of plains, furrowed and pitted terrain, and various hills, domes, and craters that were interpreted before the Apollo missions as being volcanic can now be interpreted as being basin related.

  5. K basins sludge removal sludge pretreatment system

    International Nuclear Information System (INIS)

    The Spent Nuclear Fuels Program is in the process of planning activities to remove spent nuclear fuel and other materials from the 100-K Basins as a remediation effort for clean closure. The 105 K- East and K-West Basins store spent fuel, sludge, and debris. Sludge has accumulated in the 1 00 K Basins as a result of fuel oxidation and a slight amount of general debris being deposited, by settling, in the basin water. The ultimate intent in removing the sludge and fuel is to eliminate the environmental risk posed by storing fuel at the K Basins. The task for this project is to disposition specific constituents of sludge (metallic fuel) to produce a product stream through a pretreatment process that will meet the requirements, including a final particle size acceptable to the Tank Waste Remediation System (TWRS). The purpose of this task is to develop a preconceptual design package for the K Basin sludge pretreatment system. The process equipment/system is at a preconceptual stage, as shown in sketch ES-SNF-01 , while a more refined process system and material/energy balances are ongoing (all sketches are shown in Appendix C). Thus, the overall process and 0535 associated equipment have been conservatively selected and sized, respectively, to establish the cost basis and equipment layout as shown in sketches ES- SNF-02 through 08

  6. California Basin Studies (CaBS)

    International Nuclear Information System (INIS)

    The California Continental Borderland's present configuration dates from about 4 to 5 X 106 years Before Present (B.P.) and is the most recent of several configurations of the southern California margin that have evolved after the North America Plate over-rode the East Pacific Rise about 30 X 106 years ago. The present morphology is a series of two to three northwest-southeast trending rows of depressions separated by banks and insular ridges. Two inner basins, Santa Monica and San Pedro, have been the site for the Department of Energy-funded California Basin Study (CaBS) Santa Monica and San Pedro Basins contain post-Miocene sediment thicknesses of about 2.5 and 1.5 km respectively. During the Holocene (past 10,000 years) about 10-12 m have accumulated. The sediment entered the basin by one or a combination of processes including particle infall (mainly as bioaggregates) from surface waters, from nepheloid plumes (surface, mid-depths and near-bottom), from turbidity currents, mass movements, and to a very minor degree direct precipitation. In Santa Monica Basin, during the last century, particle infall and nepheloid plume transport have been the most common processes. The former dominates in the central basin floor in water depths from 900 to 945 m. where a characteristic silt-clay with a typical mean diameter of about 0.006 mm, phi standard deviation

  7. The thermal environment of Cascadia Basin

    Science.gov (United States)

    Johnson, H. Paul; Hautala, Susan L.; Bjorklund, Tor A.

    2012-07-01

    Located adjacent to the NE Pacific convergent boundary, Cascadia Basin has a global impact well beyond its small geographic size. Composed of young oceanic crust formed at the Juan de Fuca Ridge, igneous rocks underlying the basin are partially insulated from cooling of their initial heat of formation by a thick layer of pelagic and turbidite sediments derived from the adjacent North American margin. The igneous seafloor is eventually consumed at the Cascadia subduction zone, where interactions between the approaching oceanic crust and the North American continental margin are partially controlled by the thermal environment. Within Cascadia Basin, basement topographic relief varies dramatically, and sediments have a wide range of thickness and physical properties. This variation produces regional differences in heat flow and basement temperatures for seafloor even of similar age. Previous studies proposed a north-south thermal gradient within Cascadia Basin, with high geothermal flux and crustal temperatures measured in the heavily sedimented northern portion near Vancouver Island and lower than average heat flux and basement temperatures predicted for the central and southern portions of the basin. If confirmed, this prediction has implications for processes associated with the Cascadia subduction zone, including the location of the "locked zone" of the megathrust fault. Although existing archival geophysical data in the central and southern basin are sparse, nonuniformly distributed, and derived from a wide range of historical sources, a substantial N-S geothermal gradient appears to be confirmed by our present compilation of combined water column and heat flow measurements.

  8. Data report: an assessment of the occurrence of human viruses in Long Island aquatic systems

    Energy Technology Data Exchange (ETDEWEB)

    Vaughn, J.M.; Landry, E.F.

    1977-12-01

    A virus survey was conducted in Nassau and Suffolk Counties under the auspices of the federally-funded ''208'' program from June 1976 to June 1977. The survey involved the concentration, enumeration, and identification of human enteroviruses from selected aquatic systems on Long Island including embayments, lakes, creeks, public drinking water supplies, groundwater influenced by wastewater recharge, sanitary landfills, and stormwater recharge basins; and the effluents from secondary and tertiary sewage treatment plants. Enteroviruses were isolated from all systems studied except the public water supply wells. As expected, viruses were most often encountered in the chlorinated effluents of sewage treatment plants. On two separate occasions, wild type Poliovirus was isolated from one of these plants. The limited sampling conducted at each site (1 per month) obviated any extensive interpretation of the data for the purpose of identifying the precise hazard posed by enteric viruses in Long Island waters. Among tentative conclusions were: support for the continued study of recharge of groundwater aquifers via the application of properly treated domestic wastewater to recharge basins; caution regarding placement of private septic systems in saturated zones near surface water bodies; the discharge of sewage effluents into embayments; and the identification of those areas requiring further virological study.

  9. MODEL DINAMIKA VIRUS HIV DAN VIRUS MUTAN DENGAN SISTEM IMUN

    OpenAIRE

    Ikhsan, Laode Muhammad

    2014-01-01

    Model of the dynamics of HIV infection with the mutan virus and the Immune System is a mathematical model that describes the interactions between healthy T cells, in infected cells, and the HIV virus. The models obtained three equilibrium points, which has an endemic equilibrium point and the point of equilibrium without the disease. By doing stability analysis, the stability of the equilibrium point has obtained depends on the model of the basic reproduction number (R01 dan R02). For the...

  10. PLIOCENE ALLUVIAL TO MARINE DEPOSITS OF THE VAL D’ORCIA BASIN (NORTHERN APENNINES, ITALY): SEQUENCE STRATIGRAPHY AND BASIN ANALYSIS

    OpenAIRE

    MASSIMILIANO GHINASSI

    2007-01-01

    Since the Middle-Late Miocene, the Apennine chain was characterised by the development of several basins. These basins have been alternatively explained as extensional post-orogenic basins or syn-orogenic compressional basins. In this framework, the Pliocene depositional history of the Val d'Orcia Basin (Southern Tuscany) is described, based on a sequence stratigraphic approach. Three depositional sequences (Vd3a-c) have been recognized. The Vd3a sequence records marine ingression and subsequ...

  11. Zika virus infections.

    Science.gov (United States)

    de Laval, F; Leparc-Goffart, I; Meynard, J-B; Daubigny, H; Simon, F; Briolant, S

    2016-05-01

    Since its discovery in 1947 in Uganda, the Zika virus (ZIKV) remained in the shadows emerging in 2007 in Micronesia, where hundreds of dengue-like syndromes were reported. Then, in 2013-2014, it was rife in French Polynesia, where the first neurological effects were observed. More recently, its arrival in Brazil was accompanied by an unusually high number of children with microcephaly born to mothers infected with ZIKV during the first trimester of pregnancy. In 2016, the World Health Organization declared ZIKV infection to be a public health emergency and now talks about a ZIKV pandemic. This review aims to summarize the current knowledge about ZIKV infection, successively addressing its transmission, epidemiology, clinical aspects, diagnosis, treatment, and prevention before discussing some perspectives. PMID:27412976

  12. Estimating tectonic history through basin simulation-enhanced seismic inversion: Geoinformatics for sedimentary basins

    Science.gov (United States)

    Tandon, K.; Tuncay, K.; Hubbard, K.; Comer, J.; Ortoleva, P.

    2004-01-01

    A data assimilation approach is demonstrated whereby seismic inversion is both automated and enhanced using a comprehensive numerical sedimentary basin simulator to study the physics and chemistry of sedimentary basin processes in response to geothermal gradient in much greater detail than previously attempted. The approach not only reduces costs by integrating the basin analysis and seismic inversion activities to understand the sedimentary basin evolution with respect to geodynamic parameters-but the technique also has the potential for serving as a geoinfomatics platform for understanding various physical and chemical processes operating at different scales within a sedimentary basin. Tectonic history has a first-order effect on the physical and chemical processes that govern the evolution of sedimentary basins. We demonstrate how such tectonic parameters may be estimated by minimizing the difference between observed seismic reflection data and synthetic ones constructed from the output of a reaction, transport, mechanical (RTM) basin model. We demonstrate the method by reconstructing the geothermal gradient. As thermal history strongly affects the rate of RTM processes operating in a sedimentary basin, variations in geothermal gradient history alter the present-day fluid pressure, effective stress, porosity, fracture statistics and hydrocarbon distribution. All these properties, in turn, affect the mechanical wave velocity and sediment density profiles for a sedimentary basin. The present-day state of the sedimentary basin is imaged by reflection seismology data to a high degree of resolution, but it does not give any indication of the processes that contributed to the evolution of the basin or causes for heterogeneities within the basin that are being imaged. Using texture and fluid properties predicted by our Basin RTM simulator, we generate synthetic seismograms. Linear correlation using power spectra as an error measure and an efficient quadratic

  13. Permian Basin location recommendation report

    International Nuclear Information System (INIS)

    Candidate study areas are screened from the Palo Duro and Dalhart Basin areas using data obtained from studies to date and criteria and specifications that consider: rock geometry; rock characteristics; human intrusion potential; surface characteristics; and environmental and socioeconomic conditions. Two preferred locations are recommended from among these areas for additional characterization to identify potential National Waste Terminal Storage (NWTS) salt repository sites. One location, in northeastern Deaf Smith County and southeastern Oldham County, is underlain by two salt units that meet the adopted screening specifications. The other location, in northcentral Swisher County, is underlain by one salt unit that meets the adopted screening specifications. Both locations have several favorable features, relative to surrounding areas, and no obviously undesirable characteristics. Both lie wholly on the Southern High Plains surface, are in relatively sparsely populated areas, contain no unique land use conflicts, and comprise large enough geographic areas to provide flexibility in site selection. Data gathered to date indicate that these locations contain salt units sufficient in thickness and in depth for the safe construction and operation of the underground facilities under consideration. 93 references, 34 figures, 6 tables

  14. Cryptovirology: Virus Approach

    Directory of Open Access Journals (Sweden)

    Shivale Saurabh Anandrao

    2011-08-01

    Full Text Available Traditionally, "Cryptography" is a benediction to information processing and communications, it helps people to store information securely and the private communications over long distances. Cryptovirology is the study of applications of cryptography to build the malicious software. It is an investigation, how modern cryptographic tools and paradigms can be used to strengthen, develop and improve new malicious software attacks. Cryptovirology attacks have been categorized as : give malware enhanced privacy andbe more robust against reverse-engineering, secondly give the attacker enhanced anonymity while communicating with deployed malware. This paper presents the idea of ``Cryptovirology'' which introduce a twist on how cryptography can also be used offensively. Being offensive means, it can be used to mount extortion based attacks that cause loss of access to information, loss of confidentiality, and information leakage, tasks which cryptography usually prevents. Also analyze threats and attacks that misuse of cryptography can cause when combined with fraudulent software (viruses, Trojans. Public-keycryptography is very essential for the attacks that based on cryptovirology. This paper also suggest some of the countermeasures, mechanisms to cope with and prevent such attacks. Even if the attackers actions on the host machine are being monitored, it still cannot be proven beyond reasonable doubt that he or she is the attacker; and it is an “originator-concealing attack”. Evidence should be collected from the “author’s own system which was used for the attack”. These attacks have implications on how the use ofcryptographic tools and techniques should be audited and managed in general purpose computing environments, and imply that access to the cryptographic tools should be in well control of the system(such as API routines. The experimental virus would demonstrate how cryptographic packages can be packed into a small space, which may

  15. Adeno-associated virus: from defective virus to effective vector

    Directory of Open Access Journals (Sweden)

    Gonçalves Manuel AFV

    2005-05-01

    Full Text Available Abstract The initial discovery of adeno-associated virus (AAV mixed with adenovirus particles was not a fortuitous one but rather an expression of AAV biology. Indeed, as it came to be known, in addition to the unavoidable host cell, AAV typically needs a so-called helper virus such as adenovirus to replicate. Since the AAV life cycle revolves around another unrelated virus it was dubbed a satellite virus. However, the structural simplicity plus the defective and non-pathogenic character of this satellite virus caused recombinant forms to acquire centre-stage prominence in the current constellation of vectors for human gene therapy. In the present review, issues related to the development of recombinant AAV (rAAV vectors, from the general principle to production methods, tropism modifications and other emerging technologies are discussed. In addition, the accumulating knowledge regarding the mechanisms of rAAV genome transduction and persistence is reviewed. The topics on rAAV vectorology are supplemented with information on the parental virus biology with an emphasis on aspects that directly impact on vector design and performance such as genome replication, genetic structure, and host cell entry.

  16. Transfection by DNAs of avian erythroblastosis virus and avian myelocytomatosis virus strain MC29.

    OpenAIRE

    Copeland, N G; Cooper, G M

    1980-01-01

    Chicken embryo fibroblasts and NIH 3T3 mouse cells were transformable by DNAs of chicken cells infected with avian myelocytomatosis virus strain MC29 or with avian erythroblastosis virus. Transfection of chicken cells appeared to require replication of MC29 or avian erythroblastosis virus in the presence of a nontransforming helper virus. In contrast, NIH 3T3 cells transformed by MC29 or avian erythroblastosis virus DNA contained only replication-defective transforming virus genomes.

  17. Varicella-zoster virus vaccine DNA differs from the parental virus DNA.

    OpenAIRE

    Ecker, J R; Hyman, R W

    1981-01-01

    The DNAs of a varicella-zoster virus vaccine and its parental virus were compared by CsCl buoyant density centrifugation and restriction enzyme cleavage analysis. The varicella-zoster virus vaccine DNA showed a heterogeneous buoyant profile and altered restriction enzyme cleavage patterns. These changed properties are probably the result of the accumulation of virus containing defective varicella-zoster virus DNA during extensive cell culture passage of the vaccine virus.

  18. Neoplastic transformation of chimpanzee cells induced by adenovirus type 12--simian virus 40 hybrid virus.

    OpenAIRE

    Rhim, J S; Trimmer, R; Arnstein, P; Huebner, R J

    1981-01-01

    The adenovirus 12--simian virus 40 hybrid virus produced neoplastic transformation of chimpanzee skin fibroblasts in vitro. The transformed fibroblasts showed morphological alteration and became permanent lines. The transformed cells contained both adenovirus 12 and simian virus 40 large tumor antigens and were virus producers. However at passage 9, one line (WES) was found to be a nonproducer, producing neither infectious virus nor virus-specific antigen detectable by the complement fixation...

  19. A recombinant rabies virus expressing vesicular stomatitis virus glycoprotein fails to protect against rabies virus infection

    OpenAIRE

    Foley, Heather D.; McGettigan, James P.; Siler, Catherine A.; Dietzschold, Bernhard; Schnell, Matthias J.

    2000-01-01

    To investigate the importance of the rabies virus (RV) glycoprotein (G) in protection against rabies, we constructed a recombinant RV (rRV) in which the RV G ecto- and transmembrane domains were replaced with the corresponding regions of vesicular stomatitis virus (VSV) glycoprotein (rRV-VSV-G). We were able to recover rRV-VSV-G and found that particle production was equal to rRV. However, the budding of the chimeric virus was delayed and infectious titers were red...

  20. Archaeal viruses of the sulfolobales

    DEFF Research Database (Denmark)

    Erdmann, Susanne; Garrett, Roger Antony

    2015-01-01

    Infection of archaea with phylogenetically diverse single viruses, performed in different laboratories, has failed to activate spacer acquisition into host CRISPR loci. The first successful uptake of archaeal de novo spacers was observed on infection of Sulfolobus solfataricus P2 with an environm......Infection of archaea with phylogenetically diverse single viruses, performed in different laboratories, has failed to activate spacer acquisition into host CRISPR loci. The first successful uptake of archaeal de novo spacers was observed on infection of Sulfolobus solfataricus P2 with an...... CRISPR loci of Sulfolobus species from a second coinfecting conjugative plasmid or virus (Erdmann and Garrett, Mol Microbiol 85:1044-1056, 2012; Erdmann et al. Mol Microbiol 91:900-917, 2014). Here we describe, firstly, the isolation of archaeal virus mixtures from terrestrial hot springs and the...

  1. Zika virus: An international emergency?

    Science.gov (United States)

    Palomo, Adolfo Martinez

    2016-05-01

    This Viewpoint discusses the World Health Organization's Declaration on 1 February 2016 that the epidemic infection caused by the Zika virus is a public health emergency of international concern - the basis of the decision and controversy surrounding it. PMID:26911655

  2. Oncolytic viruses in radiation oncology

    International Nuclear Information System (INIS)

    Oncolytic viruses are investigational cancer treatments. They are currently being assessed as single agents or in combination with standard therapies such as external beam radiotherapy - a DNA damaging agent that is a standard of care for many tumour types. Preclinical data indicate that combinations of oncolytic viruses and radiation therapy are promising, showing additional or synergistic antitumour effects in in vitro and in vivo studies. This interaction has the potential to be multifaceted: viruses may act as radiosensitizing agents, but radiation may also enhance viral oncolysis by increasing viral uptake, replication, gene expression and cell death (apoptosis, autophagy or necrosis) in irradiated cells. Phase I and II clinical trials investigating combinations of viruses and radiation therapy have been completed, paving the way for ongoing phase III studies. The aim of this review is to focus on the therapeutic potential of these combinations and to highlight their mechanistic bases, with particular emphasis on the role of the DNA damage response.

  3. Dengue Virus Infection in Africa

    OpenAIRE

    Amarasinghe, Ananda; Kuritsky, Joel N.; Letson, G. William; Margolis, Harold S

    2011-01-01

    Reported incidence of dengue has increased worldwide in recent decades, but little is known about its incidence in Africa. During 1960–2010, a total of 22 countries in Africa reported sporadic cases or outbreaks of dengue; 12 other countries in Africa reported dengue only in travelers. The presence of disease and high prevalence of antibody to dengue virus in limited serologic surveys suggest endemic dengue virus infection in all or many parts of Africa. Dengue is likely underrecognized and u...

  4. Hepatitis virus vaccines: present status.

    OpenAIRE

    Krugman, S.

    1982-01-01

    During the past decade there has been extraordinary progress toward the development of vaccines for the prevention of type A and type B hepatitis. The successful propagation of hepatitis A virus in cell culture in 1979 was followed by the preparation of experimental live attenuated hepatitis A vaccines that have been shown to induce antibody in marmosets and chimpanzees and protect immunized marmosets against challenge with hepatitis A virus. The first human immunization trials will begin in ...

  5. Implication of drainage basin parameters of a tropical river basin of South India

    Science.gov (United States)

    Babu, K. J.; Sreekumar, S.; Aslam, Arish

    2016-03-01

    Drainage morphometry provides quantitative description of the drainage system which is an important aspect of the characterisation of watersheds. Chalakudi River is one of the important rivers of the South India which has attracted attention of many environmental scientists recently because of the proposed Athirapally Hydel Project across the river. SRTM (Shuttle Radar Topographic Mission) data were used for preparing DEM (Digital Elevation Model), Aspect Map and Slope Map. Geographical Information System (GIS) was used for the evaluation of linear, areal and relief aspects of morphometric parameters. The study reveals that the terrain exhibits dentritic and trellis pattern of drainage. The Chalakudi River Basin has a total area of 1,448.73 km2 and is designated as seventh-order basin. The drainage density of the basin is estimated as 2.54 and the lower-order streams mostly dominate the basin. The high basin relief indicates high runoff and sediment transport. The elongation ratio of the Chalakudi Basin is estimated as 0.48 and indicates that the shape of the basin is elongated. The development of stream segments in the basin area is more or less effected by rainfall. Relief ratio indicates that the discharge capability of watershed is very high and the groundwater potential is meagre. The low value of drainage density in spite of mountainous relief indicates that the area is covered by dense vegetation and resistant rocks permeated by fractures and joints. These studies are helpful in watershed development planning and wise utilization of natural resources.

  6. A chrono-tectonostratigraphic framework for the Sydney Basin

    Science.gov (United States)

    Mohammad, O. A.; Jones, B. G.; Fergusson, C. L.

    2013-12-01

    The Sydney Basin is a foreland basin forming the southern part of the Bowen-Gunnedah-Sydney Basin system in Eastern Australia. Tectonically the Sydney Basin is regarded as a retro-arc foreland basin that developed through Late Carboniferous to Middle Triassic. Constructing a tectonstratigraphic framework for the basin is difficult due to the complex stratigraphy and poor age control, along with its complex tectonic history. A chrono-tectonostratigraphic framework for the Sydney Basin is presented based on literature synthesis combined with new data analysis. The chrono-tectonostratigraphic framework will provide an up-to-date and easy to follow detailed basin history which can be utilize in the exploration for conventional and unconventional resources in the Sydney Basin.

  7. Wave tectono-sedimentary processes in Tarim basin

    Institute of Scientific and Technical Information of China (English)

    JIN Zhijun; ZHANG Yiwei; CHEN Shuping

    2005-01-01

    Based on the unconformities, the formation times of structures, and geological wave filtering applied to basin fills of typical wells around the Manjiaer area in the Tarim basin, the wave tectono-sedimentary processes in the Tarim Basin are discussed. The results of geological wave filtering of basin fills of typical wells show that, in time domain, the evolution of the Tarim basin was controlled by various wave processes with the periods of 740±Ma, 200±Ma, 100±Ma and 30±Ma. The analyses of basin fills, basin subsidence and unconformities show that the trends of the sedimentary facies belts, depocenters, and centers of subsidence migrated and interchanged periodically with periods of 200±Ma. These show the propagation of wave movements in space domain. The wave evolution of the Tarim basin is of significance to understanding the formation of the oil and gas reservoirs in the basin.

  8. Petroleum geology of the Palo Duro Basin, Texas Panhandle

    International Nuclear Information System (INIS)

    The Palo Duro Basin, Permian Basin, Texas is an asymmetric, relatively shallow, intracratonic basin in the southern Texas Panhandle filled mostly by Mississippian, Pennsylvanian, and Permian sedimentary rocks. Although deeper and prolific prolific petroleum-producing basins adjoin it on the north (Anadarko Basin), south (Midland Basin), and east (Hardeman Basin), the Palo Duro Basin has produced remarkably small amounts of oil and gas to date. This is all the more noteworthy because the sedimentary sequence and rock types of the basin are similar to those of the adjacent basins. Analyses of the stratigraphic succession and structural configuration of the Palo Duro Basin suggest that adequate reservoir rocks, top-seals, and geologic structures are present. Most of the structures formed early enough to have trapped hydrocarbons if they were migrating in the rock column. Although additional work is under way to properly address the question of the petroleum source rocks, generation, and migration, the general absence of production in the basin may relate to an overall deficiency in hydrocarbon generation within the basin. Geologic information in this report will form part of the basis for further analysis and conclusions on hydrocarbon potential in the Palo Duro Basin

  9. Hendra Virus Re-visited

    Institute of Scientific and Technical Information of China (English)

    Hume Field

    2009-01-01

    Hendra virus, a novel member of the family Paramyxovirus that has emerged from bats in Australia, causes fatal disease in livestock and humans. Eleven spillover events have been identified since the first description of the virus in 1994, resulting in a total of 37 equine cases and six human cases. All human cases have been attributed to exposure to infected horses; there is no evidence of bat-to-human or human-to-human transmission. Low infectivity and a high case fatality rate are features of Hendra virus infection in both horses and humans. The temporal pattern of spillover events suggests seasonal factors (plausibly be environmental, biological or ecological) as the proximate triggers for spillover. Minimisation of the future occurrence and impact of Hendra virus infections requires an understanding of the ecology of flying foxes, of virus infection dynamics in flying foxes, and of the factors that promote spillover. Management strategies seek to minimize the opportunity for effective contact between bats and horses, and limit potential horse-to-horse and horse-to-human transmission. Incomplete knowledge of the ecology of the virus, of the proximate factors associated with spillover, and the inherent difficulties of effectively managing wild populations, preclude a management approach targeted at bats.

  10. Hydrogeology of the West Siberian Basin

    International Nuclear Information System (INIS)

    Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in significant contamination of the environment in western Siberia. The radioactive releases to surface waters and the surficial environment from the Mayak site are the largest known in the world. However, they are dwarfed by the amounts of liquid wastes injected into the subsurface at Tomsk and Krasnoyarsk since the early 1960s. This paper provides the status of efforts by Pacific Northwest National Laboratory to quantify the regional hydrogeologic context for potential contaminant migration from areas in western Siberia. The West Siberian Basin is the largest platformal basin and region of low relief on earth. Ground water in the West Siberian Basin is contained in a single geologic structure (i.e., a single basin). Hydrogeologic cross sections indicate that freshwater wedges are present in both unconfined and confined aquifers (as well as in Paleozoic rocks) in the highland regions that rim the basin. The authors developed a 13-layer, finite-element computer model of the West Siberian Basin primarily based on GIS integration of data from geologic studies. The top of the hydrologic system was assumed to coincide with a water table derived from smoothed topography and surface-water occurrences; precipitation supplied the water, and the topographic gradient of the water table supplied the driving force for ground-water flow. The general directions of calculated ground-water flow suggest that (1) the major rivers act as discharge areas, with upwelling below the rivers extending down into the basement rocks; and (2) ground-water divides that penetrate the entire thickness of the model are evident between the major rivers. Their results suggest that contaminants entering the confined aquifer system may eventually migrate to the surface, discharging within major rivers, rather than remaining confined for long travel distances within the basin sediments

  11. Preliminary discussion on relationship between deep-basin gas and uranium mineralization in Ordos basin

    International Nuclear Information System (INIS)

    Deep-basin gas is a kind of non-traditional natural gas deposit. The deep-basin gas in Ordos basin is closely associated with uranium mineralization. Upper Paleozoic in the basement of the basin represents both gas-sourced and uranium-sourced beds and uranium in Paleozoic strata is easily leachable. The squeezed water (i.e. deep-bed water) formed during the diagenetic process of uranium-sourced bed was rapidly heated and pressed making the uranium solubility in it greatly increased. It was just the peak-period of gas generation in the basin, and gas pressure greatly exceeded water pressure. So, the gas made deep-bed water moved and diffused upwards along faults. Because of the complicated gas-water geochemical barrier formed by the involvement of surface water, the precipitation of uranium occurred in overlying aquifers to form uranium deposit. This paper has summarized prospecting criteria of such uranium deposit as well

  12. Zika Virus Infection and Zika Fever: Frequently Asked Questions

    Science.gov (United States)

    ... Frequently asked questions Updated: 25 March 2016 ABOUT ZIKA What is Zika virus infection? Zika virus infection is caused by ... possible to characterize the disease better. How is Zika virus transmitted? Zika virus is transmitted to people ...

  13. The IFITMs Inhibit Zika Virus Replication

    OpenAIRE

    George Savidis; Jill M. Perreira; Jocelyn M. Portmann; Paul Meraner; Zhiru Guo; Sharone Green; Abraham L. Brass

    2016-01-01

    Zika virus has emerged as a severe health threat with a rapidly expanding range. The IFITM family of restriction factors inhibits the replication of a broad range of viruses, including the closely related flaviruses West Nile virus and dengue virus. Here, we show that IFITM1 and IFITM3 inhibit Zika virus infection early in the viral life cycle. Moreover, IFITM3 can prevent Zika-virus-induced cell death. These results suggest that strategies to boost the actions and/or levels of the IFITMs mig...

  14. Advances in Research of Garlic Virus Diseases

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Garlic virus infection is an important disease which affects garlic production,with the increasing years of planting,harm of virus is serious year by year,which seriously affect yield and quality of garlic.In order to know the garlic virus effectively,the paper reviewed the research situation of several important garlic virus in virus species,origin,distribution,host range,symptom,route of transmission,classification,genome and detection technique and the prevention technology of garlic viruses.At the same ...

  15. The Mode of Net-Virus Actions

    Institute of Scientific and Technical Information of China (English)

    ShanXiuming; LiYing; JiaoJian; LiuYang; RenYong; QiuBen; CaoYiqun

    2004-01-01

    The computer network is not only of benefit to people, but also helpful for the spreading of viruses. The net-viruses spread more widely and rapidly than the traditional viruses, and network has become the major path of the virus spreading. The author analyzes the mode of the net-virus spreading, including E-mail spreading, positive scanning spreading and through-server spreading. Then some defense strategies in the anti-virus field are introduced, and some countermeasures of the net computer users are discussed.

  16. Corrosion in ICPP fuel storage basins

    International Nuclear Information System (INIS)

    The Idaho Chemical Processing Plant currently stores irradiated nuclear fuel in fuel storage basins. Historically, fuel has been stored for over 30 years. During the 1970's, an algae problem occurred which required higher levels of chemical treatment of the basin water to maintain visibility for fuel storage operations. This treatment led to higher levels of chlorides than seen previously which caused increased corrosion of aluminum and carbon steel, but has had little effect on the stainless steel in the basin. Corrosion measurements of select aluminum fuel storage cans, aluminum fuel storage buckets, and operational support equipment have been completed. Aluminum has exhibited good general corrosion rates, but has shown accelerated preferential attack in the form of pitting. Hot dipped zinc coated carbon steel, which has been in the basin for approximately 40 years, has shown a general corrosion rate of 4 mpy, and there is evidence of large shallow pits on the surface. A welded type 304 stainless steel corrosion coupon has shown no attack after 13 years exposure. Galvanic couples between carbon steel welded to Type 304 stainless steel occur in fuel storage yokes exposed to the basin water. These welded couples have shown galvanic attack as well as hot weld cracking and intergranular cracking, The intergranular stress corrosion cracking is attributed to crevices formed during fabrication which allowed chlorides to concentrate

  17. Satellite altimetry over large hydrological basins

    Science.gov (United States)

    Calmant, Stephane

    2015-04-01

    The use of satellite altimetry for hydrological applications, either it is basin management or hydrological modeling really started with the 21st century. Before, during two decades, the efforts were concentrated on the data processing until a precision of a few decimeters could be achieved. Today, several web sites distribute hundreds of series spread over hundeds of rivers runing in the major basins of the world. Among these, the Amazon basin has been the most widely studied. Satellite altimetry is now routinely used in this transboundary basin to predict discharges ranging over 4 orders of magnitude. In a few years, satellite altimetry should evolve dramatically. This year, we should see the launchs of Jason-3 and that of Sentinel-3A operating in SAR mode. With SAR, the accuracy and resolution of a growing number of measurements should be improved. In 2020, SWOT will provide a full coverage that will join in a unique framework all the previous and forthcoming missions. These technical and thematical evolutions will be illustrated by examples taken in the Amazon and Congo basin.

  18. Corrosion in ICPP fuel storage basins

    International Nuclear Information System (INIS)

    The Idaho Chemical Processing Plant currently stores irradiated nuclear fuel in fuel storage basins. Historically, fuel has been stored for over 30 years. During the 1970's, an algae problem occurred which required higher levels of chemical treatment of the basin water to maintain visibility for fuel storage operations. This treatment led to higher levels of chlorides than seen previously which cause increased corrosion of aluminum and carbon steel, but has had little effect on the stainless steel in the basin. Corrosion measurements of select aluminum fuel storage cans, aluminum fuel storage buckets, and operational support equipment have been completed. Aluminum has exhibited good general corrosion rates, but has shown accelerated preferential attack in the form of pitting. Hot dipped zinc coated carbon steel, which has been in the basin for approximately 40 years, has shown a general corrosion rate of 4 mpy, and there is evidence of large shallow pits on the surface. A welded Type 304 stainless steel corrosion coupon has shown no attack after 13 years exposure. Galvanic couples between carbon steel welded to Type 304 stainless steel occur in fuel storage yokes exposed to the basin water. These welded couples have shown galvanic attack as well as hot weld cracking and intergranular cracking. The intergranular stress corrosion cracking is attributed to crevices formed during fabrication which allowed chlorides to concentrate

  19. Occurrence of norovirus and hepatitis A virus in shellfish

    Directory of Open Access Journals (Sweden)

    VALENTINA TERIO

    2014-06-01

    Full Text Available Norovirus (NoV and hepatitis A virus (HAV are a common cause of gastroenteritis outbreaks associated with consumption of raw shellfish. The majority of NoV infections worldwide are due to geno group II NoVs. The predominant HAV strains belong to sub-genotype IB. A total of 369 bivalve molluscs (294 mussels, 42 clams and 33 oysters from several retail points and harvesting class-A areas of the Adriatic basin in South Italy, North Italy and Albania (Butrinti Lagoon were sampled between 2008-2013. All the samples were screened by a hemi-nested RT-PCR specific for NoV geno group II and by a nested RT-PCR for the VP1/2A region of HAV. NoV RNA was detected in 10,5% of samples and ranged from 3% in 2008 to 85% in 2013. HAV RNA was detected in 32,5% of samples and ranged from 90% in 2008 to 3,1% in 2013. The marked decrease in HAV prevalence may be the related to the vaccine-induced immunity, able to interrupt the ecological cycle of HAV. Monitoring the epidemiology of the virus strains circulating in the fieldis pivotal to develop and assess the efficacy of new control strategies to reduce the risks for public health.

  20. Basin analysis and modeling of the burial, thermal and maturation histories in sedimentary basins

    Energy Technology Data Exchange (ETDEWEB)

    Makhous, M.; Galushkin, Y.

    2004-11-01

    This book is devoted to the field of basin analysis, and in particular to the one- and two-dimensional modeling of the burial, thermal and maturation histories of sedimentary basins, in the context of evaluating their hydrocarbon potential. A new modeling system is elaborated in this work and applied to continental basins. Particular attention is paid to specific features of basin evolution, including the compaction of sediments deposited at a variable rate, erosion of the sedimentary strata and basement, intrusive and hydrothermal activity, thermal activation and reactivation of the basement, lateral heat exchange of multiple-aged blocks of the oceanic and continental lithospheres, the jumping of spreading axes, etc. Alternative methods are applied for the control of tectonic subsidence, isostasy and rheology, lithosphere stretching and thinning. In order to evaluate their respective contributions to the thermal history of basins, a variety of situations are modeled, including spreading jumping, the evaluation of erosion heat, its impact on thermal history and links to pre- and post-sedimentation history, intrusion activity, and the formation and degradation of cryolitic zones (permafrost) in high-latitude basins of the Northern and Southern Hemispheres. A joint analysis of heat flow transfer in the sedimentary cover and the underlying lithosphere and asthenosphere is applied to better reconstruct their thermal and maturation histories. To further enhance the model's validity, an additional powerful control tool is applied, based on the coincidence of two calculations of tectonic curve subsidence of the basement surface, obtained by two independent approaches: back-stripping and temperature-dependant density distribution in the crust. This approach is also used to refine the simulation sequence for tectonic and thermal events in the history of sedimentary basins. Contents: 1. The Geodynamic Setting and Some Geomechanical Aspects of the Initiation and

  1. Production of cattle immunotolerant to bovine viral diarrhea virus.

    OpenAIRE

    McClurkin, A W.; Littledike, E T; Cutlip, R C; Frank, G H; Coria, M F; Bolin, S R

    1984-01-01

    Inoculation of bovine virus diarrhea virus into 58 to 125 day old fetuses of bovine virus diarrhea virus seropositive pregnant cows, or inoculation of bovine virus diarrhea virus into seronegative cows 42 to 114 days pregnant, may produce clinically normal calves which are persistently infected with the specific isolate of bovine virus diarrhea virus yet seronegative to the homologous and heterologous isolates. Reinoculation of these persistently infected cattle with their homologous isolate ...

  2. Presence and Distribution of Tobacco Viruses in Montenegro

    OpenAIRE

    Jelena Zindović; Nataša Dukić; Aleksandra Bulajić; Jelena Latinović; Ivana Đekić; Bojan Duduk; Branka Krstić

    2007-01-01

    Seven important tobacco viruses were investigated in Montenegro in 2005: Tobacco Mosaic Virus (TMV), Tomato Spotted Wilt Virus (TSWV), Cucumber Mosaic Virus (CMV), Potato Virus Y (PVY), Alfalfa Mosaic Virus (AMV), Tobacco Ring Spot Virus (TRSV) and Potato Virus X(PVX). This investigation included sample collection from four tobacco growing regions in Montenegro and their serological testing by DAS-ELISA test. Presence of different strains of PVY was investigated as well using DAS ELISA test w...

  3. Peptide inhibitors of dengue virus and West Nile virus infectivity

    Directory of Open Access Journals (Sweden)

    Garry Robert F

    2005-06-01

    Full Text Available Abstract Viral fusion proteins mediate cell entry by undergoing a series of conformational changes that result in virion-target cell membrane fusion. Class I viral fusion proteins, such as those encoded by influenza virus and human immunodeficiency virus (HIV, contain two prominent alpha helices. Peptides that mimic portions of these alpha helices inhibit structural rearrangements of the fusion proteins and prevent viral infection. The envelope glycoprotein (E of flaviviruses, such as West Nile virus (WNV and dengue virus (DENV, are class II viral fusion proteins comprised predominantly of beta sheets. We used a physio-chemical algorithm, the Wimley-White interfacial hydrophobicity scale (WWIHS 1 in combination with known structural data to identify potential peptide inhibitors of WNV and DENV infectivity that target the viral E protein. Viral inhibition assays confirm that several of these peptides specifically interfere with target virus entry with 50% inhibitory concentration (IC50 in the 10 μM range. Inhibitory peptides similar in sequence to domains with a significant WWIHS scores, including domain II (IIb, and the stem domain, were detected. DN59, a peptide corresponding to the stem domain of DENV, inhibited infection by DENV (>99% inhibition of plaque formation at a concentrations of 99% inhibition at

  4. Exploration in the Ombilin Intermontane Basin, West Sumatra

    Energy Technology Data Exchange (ETDEWEB)

    Koning, T. (Texaco Overseas (Nig.) Petroleum Co., Lagos (Nigeria))

    1996-01-01

    The Ombilin Basin is a Tertiary intermontane basin located within the Barisan Mountain Range of Sumatra. Oil exploration commenced in the Ombilin Basin in the early 1980s when geological mapping was carried out, a synthetic aperture radar survey was flown, and a basin-wide geophysical survey was completed. This effort led to the drilling of Sinimar No. 1 to a total depth 3020 m. Sinimar No. 1 was a historic well in Indonesia's oil industry since it was the first oil exploration well drilled in the Ombilin Basin and also the first well drilled in an intermontane basin in Indonesia. Oil, gas and condensate was tested in the well. An integrated interpretation of the well, geophysical and outcrop data indicates that despite its small areal size (30 km x 50 km), the Ombilin Basin is a deep pull-apart basin containing up to 4500 m of Tertiary sediments, ranging in age from Middle Eocene to Early Miocene. The basin currently is in an intermontane basin structural setting but it was also an intermontane basin during its Early Tertiary depositional history. During the Eocene, alluvial fans and massive debris flows were deposited on the basin margins and a large lake occupied the basin center. Fluvial deposition occurred in the basin during the Oligocene followed by deposition of marine shales, sandstones, and isolated reefs during the Miocene. Although the Ombilin Basin is located within Sumatra's magmatic arc and is partially covered by volcanics from extinct and active volcanoes, the subsurface temperature gradients of 1.62 deg. F/100 ft. recorded in Sinimar No. I and 1.47 deg F/100 ft. measured in a deep (670 m) coal exploration core hole are significantly cooler than the average subsurface temperature gradients in the Sumatra back-arc basins. Organic-rich Eocene lacustrine shales are the likely source rocks for the hydrocarbons tested in Sinimar No. 1 and the oil seeps located along the basin margins.

  5. Exploration in the Ombilin Intermontane Basin, West Sumatra

    Energy Technology Data Exchange (ETDEWEB)

    Koning, T. [Texaco Overseas (Nig.) Petroleum Co., Lagos (Nigeria)

    1996-12-31

    The Ombilin Basin is a Tertiary intermontane basin located within the Barisan Mountain Range of Sumatra. Oil exploration commenced in the Ombilin Basin in the early 1980s when geological mapping was carried out, a synthetic aperture radar survey was flown, and a basin-wide geophysical survey was completed. This effort led to the drilling of Sinimar No. 1 to a total depth 3020 m. Sinimar No. 1 was a historic well in Indonesia`s oil industry since it was the first oil exploration well drilled in the Ombilin Basin and also the first well drilled in an intermontane basin in Indonesia. Oil, gas and condensate was tested in the well. An integrated interpretation of the well, geophysical and outcrop data indicates that despite its small areal size (30 km x 50 km), the Ombilin Basin is a deep pull-apart basin containing up to 4500 m of Tertiary sediments, ranging in age from Middle Eocene to Early Miocene. The basin currently is in an intermontane basin structural setting but it was also an intermontane basin during its Early Tertiary depositional history. During the Eocene, alluvial fans and massive debris flows were deposited on the basin margins and a large lake occupied the basin center. Fluvial deposition occurred in the basin during the Oligocene followed by deposition of marine shales, sandstones, and isolated reefs during the Miocene. Although the Ombilin Basin is located within Sumatra`s magmatic arc and is partially covered by volcanics from extinct and active volcanoes, the subsurface temperature gradients of 1.62 deg. F/100 ft. recorded in Sinimar No. I and 1.47 deg F/100 ft. measured in a deep (670 m) coal exploration core hole are significantly cooler than the average subsurface temperature gradients in the Sumatra back-arc basins. Organic-rich Eocene lacustrine shales are the likely source rocks for the hydrocarbons tested in Sinimar No. 1 and the oil seeps located along the basin margins.

  6. Virus elimination in acute lymphocytic choriomeningitis virus infection. Correlation with virus-specific delayed-type hypersensitivity rather than cytotoxicity

    DEFF Research Database (Denmark)

    Thomsen, Allan Randrup; Volkert, M; Bro-Jørgensen, K

    1983-01-01

    The immunological effector mechanism responsible for the elimination of virus in murine acute non-fatal extracranial lymphocytic choriomeningitis virus infection was studied. In this infection virus clearance is generally regarded as the result of a direct action of virus-specific cytotoxic T cells...... (Tc cells) on virus-producing target cells in the infected mouse. However, by manipulating the antiviral immune response by pretreatment with various doses of cyclophosphamide, we found lack of correlation between Tc-cell activity and the clearance of virus. In contrast, we observed a conspicuous...... correlation between the host's ability to mount a virus-specific delayed-type hypersensitivity (DTH) response and its capacity to combat virus. Moreover, pretreatment with silica and carrageenan prolonged viraemia without impairment of the peak Tc-cell response. These findings indicate that Tc cells have...

  7. Ebola virus: recommendations

    CERN Multimedia

    CERN Medical Service

    2014-01-01

    The CERN Medical Service has been closely following, in particular via the WHO, the development of the Ebola virus outbreak currently affecting some African countries. This infectious disease may be passed on through direct contact with the bodily fluids of a sick person.   Based on the recommendations of the WHO and the two Host States, Switzerland and France, as updated on their respective websites, so far there has been no ban on travel to the countries concerned. However, unless it is absolutely essential, you are advised not to visit any of the countries affected by Ebola (Guinea, Republic of Sierra Leone, Liberia, Nigeria). The two Host States have established an alert system, and a check is carried out on departure from the airports of those countries. It is strongly recommended that you contact the Medical Service if you are travelling to those countries. We remind you to observe the basic rules of hygiene such as frequent hand washing, whatever your destination. The Medical Service is...

  8. Hepatitis B virus replication

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Hepadnaviruses, including human hepatitis B virus (HBV), replicate through reverse transcription of an RNA intermediate, the pregenomic RNA (pgRNA). Despite this kinship to retroviruses, there are fundamental differences beyond the fact that hepadnavirions contain DNA instead of RNA. Most peculiar is the initiation of reverse transcription: it occurs by protein-priming, is strictly committed to using an RNA hairpin on the pgRNA,ε, as template, and depends on cellular chaperones;moreover, proper replication can apparently occur only in the specialized environment of intact nucleocapsids.This complexity has hampered an in-depth mechanistic understanding. The recent successful reconstitution in the test tube of active replication initiation complexes from purified components, for duck HBV (DHBV),now allows for the analysis of the biochemistry of hepadnaviral replication at the molecular level. Here we review the current state of knowledge at all steps of the hepadnaviral genome replication cycle, with emphasis on new insights that turned up by the use of such cellfree systems. At this time, they can, unfortunately,not be complemented by three-dimensional structural information on the involved components. However, at least for the s RNA element such information is emerging,raising expectations that combining biophysics with biochemistry and genetics will soon provide a powerful integrated approach for solving the many outstanding questions. The ultimate, though most challenging goal,will be to visualize the hepadnaviral reverse transcriptase in the act of synthesizing DNA, which will also have strong implications for drug development.

  9. Hepatitis B virus morphogenesis

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The hepatitis B virus (HBV) particle consists of an envelope containing three related surface proteins and probably lipid and an icosahedral nucleocapsid of approximately 30 nm diameter enclosing the viral DNA genome and DNA polymerase. The capsid is formed in the cytosol of the infected cell during packaging of an RNA pregenome replication complex by multiple copies of a 21-kDa C protein. The capsid gains the ability to bud during synthesis of the viral DNA genome by reverse transcription of the pregenome in the lumen of the particle. The three envelope proteins S,M, and L shape a complex transmembrane fold at the endoplasmic reticulum, and form disulfide-linked homoand heterodimers. The transmembrane topology of a fraction of the large envelope protein L changes posttranslationally, therefore, the N terminal domain of L (preS) finally appears on both sides of the membrane.During budding at an intracellular membrane, a short linear domain in the cytosolic preS region interacts with binding sites on the capsid surface. The virions are subsequently secreted into the blood. In addition, the surface proteins can bud in the absence of capsids and form subviral lipoprotein particles of 20 nm diameter which are also secreted.

  10. Oncolytic virus therapies.

    Science.gov (United States)

    Buonaguro, Franco Maria; Tornesello, Maria Lina; Izzo, Francesco; Buonaguro, Luigi

    2012-11-01

    Oncolytic virus (OV) therapy currently represents one of the most promising approaches to cancer treatment for their dual anticancer mechanisms: direct lysis of cancer cells (oncolytic feature) and activation of the immunosystem (cancer vaccine aspect). The latter demonstrates the advantage of a multi-target approach against multiple tumor-associated antigens. Since the 2005 SFDA (the Chinese FDA) approval for the clinical use of Oncorine™, the first human OV-based cancer treatment, more than 200 patents have been filed worldwide and several Phase I/II studies have been conducted. This patent review analyzes patents and clinical studies of the most promising OV products to highlight the pros and cons of this innovative anticancer approach, which is currently being tested in several cancers (i.e., hepatocellular carcinoma, melanoma and glioblastoma) by systemic as well as intratumoral injection. Clinical results, although effective only for a limited period of time, are encouraging. Combined treatments with radio or chemotherapeutic protocols are also in progress. PMID:24236929

  11. Immune based computer virus detection approaches

    Institute of Scientific and Technical Information of China (English)

    TAN Ying; ZHANG Pengtao

    2013-01-01

    The computer virus is considered one of the most horrifying threats to the security of computer systems worldwide.The rapid development of evasion techniques used in virus causes the signature based computer virus detection techniques to be ineffective.Many novel computer virus detection approaches have been proposed in the past to cope with the ineffectiveness,mainly classified into three categories:static,dynamic and heuristics techniques.As the natural similarities between the biological immune system (BIS),computer security system (CSS),and the artificial immune system (AIS) were all developed as a new prototype in the community of anti-virus research.The immune mechanisms in the BIS provide the opportunities to construct computer virus detection models that are robust and adaptive with the ability to detect unseen viruses.In this paper,a variety of classic computer virus detection approaches were introduced and reviewed based on the background knowledge of the computer virus history.Next,a variety of immune based computer virus detection approaches were also discussed in detail.Promising experimental results suggest that the immune based computer virus detection approaches were able to detect new variants and unseen viruses at lower false positive rates,which have paved a new way for the anti-virus research.

  12. Configuration Management Plan for K Basins

    International Nuclear Information System (INIS)

    This plan describes a configuration management program for K Basins that establishes the systems, processes, and responsibilities necessary for implementation. The K Basins configuration management plan provides the methodology to establish, upgrade, reconstitute, and maintain the technical consistency among the requirements, physical configuration, and documentation. The technical consistency afforded by this plan ensures accurate technical information necessary to achieve the mission objectives that provide for the safe, economic, and environmentally sound management of K Basins and the stored material. The configuration management program architecture presented in this plan is based on the functional model established in the DOE Standard, DOE-STD-1073-93, open-quotes Guide for Operational Configuration Management Programclose quotes

  13. Electricity, development and cooperation in mediterranean basin

    International Nuclear Information System (INIS)

    Energy consumption along the southern rim of the Mediterranean basin is increasing much more quickly than on the northern side, in accordance with the different industrialization and urbanization rates. Over the last two decades, electric power consumption has been increasing throughout the basin at a rate exceeding not only that of total energy consumption but even that of the economy itself. The various electric power development strategies the countries of the Mediterranean have developed differ widely depending on the available energy resources they have. Power distribution systems are a strategic element of co-operation in the Mediterranean basin. Though all of these strategies involve cost trade-offs between diversification of energy sources, domestic supply and environmental protection, difficulties exist that may curtail the development of these programs. 2 figs., 4 tabs

  14. An important form of basin-mountain coupling:Orogenic belt and flank basin

    Institute of Scientific and Technical Information of China (English)

    WANG Erchie

    2004-01-01

    Orogeny is always associated with the erosion and sediments carried by both transverse and longitudinal river systems. Those two river systems transport sediments into foreland or hinterland basin and flank basin. Longitudinal river systems prevail in and around the Tibetan Plateau due to the fact that they flow parallel to the strike of structures within the developing mountain belt. The flank basins surrounded the Tibetan Plateau and adjacent areas are developed in different tectonic settings, including inland,continental margin and deep ocean, most of them containing oil and natural gas. Those basins not only have longer evolution histories than foreland basins but also are more complete in their records of deposition. Coupling of orogeny and flank basin deposition also occurred widely in pre-Cenozoic time, in particular, the coupling between the Qinling orogenic belt and Songpan-Ganzi flysch flank basin is the most distinctive. The evolution of ancient latitudinal rivers derived from the Qinling orogenic belt during periods of mountain building was controlled not only by landforms but also by the lateral extrusion of the crustal fragments.

  15. Ground-water hydraulics of the deep-basin brine aquifer, Palo Duro Basin, Texas panhandle

    International Nuclear Information System (INIS)

    The Deep-Basin Brine aquifer of the Palo Duro Basin (Texas Panhandle) underlies thick Permian bedded evaporites that are being evaluated as a potential high-level nuclear waste isolation repository. Potentiometric surface maps of 5 units of the Deep-Basin Brine aquifer were drawn using drill-stem test (DST) pressure data, which were analyzed by a geostatistical technique (kriging) to smooth the large variation in the data. The potentiometric surface maps indicate that the Deep-Basin Brine aquifer could be conceptually modeled as 5 aquifer units; a Lower Permian (Wolfcamp) aquifer, upper and lower Pennsylvanian aquifers, a pre-Pennsylvanian aquifer, and a Pennsylvanian to Wolfcampian granite-wash aquifer. The hydraulic head maps indicate that ground-water flow in each of the units is west to east with a minor northerly component near the Amarillo Uplift, the northern structural boundary of the basin. The Wolfcamp potentiometric surface indicates the strongest component of northerly flow. Inferred flow direction in Pennsylvanian aquifers is easterly, and in the pre-Pennsylvanian aquifer near its pinch-out in the basin center, flow is inferred to be to the north. In the granite-wash aquifer the inferred flow direction is east across the northern edge of the basin and southeast along the Amarillo Uplift

  16. Geothermal structure of Australia's east coast basins

    Science.gov (United States)

    Danis, C. R.; O'Neill, C.

    2010-12-01

    The east coast sedimentary basins of Australia formed on an active margin of eastern Gondwana, and constitute an important hydrocarbon resource. The 1600km long Sydney-Gunnedah-Bowen Basin (SGBB) is largest east coast basin system, with thick Permian to Jurassic sedimentary successions overlying Palaeozoic basement rocks. The SGBB has been the focus of renewed geothermal exploration interest, however, the thermal state and geothermal potential of the system is largely unconstrained. Geothermal exploration programs require an accurate estimate of subsurface temperature information, in addition to favourable geology, to make informed decisions on potential targe developments. Primarily temperature information comes from downhole measurements, generally non-equilibrated, which are traditionally extrapolated to depth, however such extrapolation does not take into account variations in geological structure or thermal conductivity. Here we import deep 3D geological models into finite element conduction simulations, using the code Underworld, to calculate the deep thermal structure of the basin system. Underworld allows us to incorporate complex, detailed geological architecture models, incorporating different material properties for different layers, with variable temperature and depth-dependent properties. We adopt a fixed top boundary temperature on a variable topographic surface, and vary the bottom surface boundary condition, to converge of models which satisfy equilibrated downhole temperature measurement constraints. We find coal plays an important role in insulating sedimentary basins. Heat refracts around the coal interval and produces elevated temperatures beneath thick sediments, especially where thick coal intervals are present. This workflow has been formalized into an Underworld geothermal model library, enabling model centric computational workflows. Using the imported model architecture from the geology, data can be continuously updated and added to the

  17. Hydrogeology of the West Siberian Basin

    International Nuclear Information System (INIS)

    Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in extensive radioactive contaminant releases to the environment in western Siberia. We are developing three-dimensional numerical models of the hydrogeology and potential contaminant migration in the West Siberian Basin. We have assumed that ground-water flow in the West Siberian Basin is topographically driven, with recharge to the basin occurring in the highlands on the west, east, and south, and internal discharge localized in numerous river valleys and lakes that ultimately discharge north to the ocean. We are modeling the regional hydrogeology as three-dimensional, steady-state, saturated flow that is recharged from above. We acquired topographic, geologic, hydrostratigraphic, hydrogeologic, and water-balance data for the West Siberian Basin and constructed a regional water table. We correlated and combined 70 different rock types derived from published descriptions of West Siberian Basin rocks into 17 rock types appropriate for assignment of hydrogeologic properties on the basis of spatial heterogeneity and constituent (i.e., sand, silt, and clay) diversity. Examination of resulting three-dimensional assemblages of rock types showed that they were consistent with published and inferred paleogeography and depositional processes. Calibrating the basin's moisture balance (i.e., recharge and discharge) to the derived water table determined plausible input parameter values for unknowns such as hydraulic conductivities. The general directions of calculated ground-water flow suggest that major rivers act as discharge areas, with upwelling below the rivers extending down into the basement rocks, and that ground-water divides that penetrate the entire thickness of the model are evident between major rivers

  18. Autophagic machinery activated by dengue virus enhances virus replication

    International Nuclear Information System (INIS)

    Autophagy is a cellular response against stresses which include the infection of viruses and bacteria. We unravel that Dengue virus-2 (DV2) can trigger autophagic process in various infected cell lines demonstrated by GFP-LC3 dot formation and increased LC3-II formation. Autophagosome formation was also observed under the transmission electron microscope. DV2-induced autophagy further enhances the titers of extracellular and intracellular viruses indicating that autophagy can promote viral replication in the infected cells. Moreover, our data show that ATG5 protein is required to execute DV2-induced autophagy. All together, we are the first to demonstrate that DV can activate autophagic machinery that is favorable for viral replication

  19. Exploration Experience and Problem concerning Deep Basin Gas in the Ordos Basin

    Institute of Scientific and Technical Information of China (English)

    MaXinhua

    2004-01-01

    Deep basin gas (DBG) reservoirs, in view of the characteristics of their main parts containing gas, are a type of subtle stratigraphic lithologic traps. But they have different reservoir-forming principles, especially in the distribution of oil, gas and water. DBG is characterized by gas-water invertion, namely the water located above the gas; however, normal non-anticline subtle reservoirs have normal distribution of gas and water, namely the water located under the gas. The theory of DBG broke the conventional exploration idea that gas is usually found in the high part of reservoir and water is under the gas. So, it provided a wide field and a new idea for the exploration of natural gas. Recently Ben E. Law (2002), in his article entitled "Basin-centered Gas Systems", discussed global DBG systemically. He listed 72 basins or areas containing known or suspected DBG, covering North America, South America, Europe, Asia-Pacific, South Asia, Middle East and Africa. Ordos basin, the Sichuan basin and the Jungar basin in China are presented and assumed to be of very high possibility. In China more attention has been paid to the research and exploration of DBG in the past years. The symposiums on DBG were held twice, in Guangzhou in 1998 and in Xi'an in 2000 respectively. In 2002 in particular, the publication of the book named Deep Basin Gas in China by Professor Wangtao indicated that China has entered a new stage in the research on DBG. Meanwhile, it is more cheering that the exploration of DBG in the Ordos Basin has achieved remarkable success. Therefore, analyzing the exploration experiences and problems regarding the Ordos basin will promote the exploration and research of DBG in China.

  20. [Bats and Viruses: complex relationships].

    Science.gov (United States)

    Rodhain, E

    2015-10-01

    With more than 1 200 species, bats and flying foxes (Order Chiroptera) constitute the most important and diverse order of Mammals after Rodents. Many species of bats are insectivorous while others are frugivorous and few of them are hematophagous. Some of these animals fly during the night, others are crepuscular or diurnal. Some fly long distances during seasonal migrations. Many species are colonial cave-dwelling, living in a rather small home range while others are relatively solitary. However, in spite of the importance of bats for terrestrial biotic communities and ecosystem ecology, the diversity in their biology and lifestyles remain poorly known and underappreciated. More than sixty viruses have been detected or isolated in bats; these animals are therefore involved in the natural cycles of many of them. This is the case, for instance, of rabies virus and other Lyssavirus (Family Rhabdoviridae), Nipah and Hendra viruses (Paramyxoviridae), Ebola and Marburg viruses (Filoviridae), SARS-CoV and MERS-CoV (Coronaviridae). For these zoonotic viruses, a number of bat species are considered as important reservoir hosts, efficient disseminators or even directly responsible of the transmission. Some of these bat-borne viruses cause highly pathogenic diseases while others are of potential significance for humans and domestic or wild animals; so, bats are an important risk in human and animal public health. Moreover, some groups of viruses developed through different phylogenetic mechanisms of coevolution between viruses and bats. The fact that most of these viral infections are asymptomatic in bats has been observed since a long time but the mechanisms of the viral persistence are not clearly understood. The various bioecology of the different bat populations allows exchange of virus between migrating and non-migrating conspecific species. For a better understanding of the role of bats in the circulation of these viral zoonoses, epidemiologists must pay attention to

  1. Coping with Computer Viruses: General Discussion and Review of Symantec Anti-Virus for the Macintosh.

    Science.gov (United States)

    Primich, Tracy

    1992-01-01

    Discusses computer viruses that attack the Macintosh and describes Symantec AntiVirus for Macintosh (SAM), a commercial program designed to detect and eliminate viruses; sample screen displays are included. SAM is recommended for use in library settings as well as two public domain virus protection programs. (four references) (MES)

  2. Dot immunobinding assay for simultaneous detection of specific immunoglobulin G antibodies to measles virus, mumps virus, and rubella virus.

    OpenAIRE

    F. Condorelli; Ziegler, T.

    1993-01-01

    A dot immunobinding assay was used to detect antibodies to measles virus, mumps virus, and rubella virus antigens. Filter paper soaked with serum or whole blood was directly applied to the antigen-coated nitrocellulose sheets. The test was easy to perform, and its results agreed very well with those obtained by standard enzyme immunoassay.

  3. Megafans of the Northern Kalahari Basin

    Science.gov (United States)

    Wilkinson, M. J.; Miller, R. McG.; Eckardt, F.; Kreslavsky, M. A.

    2016-01-01

    We identify eleven megafans (partial cones of fluvial sediment, >80 km radius) in the northern Kalahari Basin, using several criteria based on VIS and IR remotely sensed data and SRTM-based surface morphology reconstructions. Two other features meet fewer criteria of the form which we class as possible megafans. The northern Kalahari megafans are located in a 1700 km arc around the southern and eastern flanks of the Angola's Bié Plateau, from northern Namibia through northwest Botswana to western Zambia. Three lie in the Owambo subbasin centered on the Etosha Pan, three in the relatively small Okavango rift depression, and five in the Upper Zambezi basin. The population includes the well-known Okavango megafan (150 km), Namibia's Cubango megafan, the largest megafan in the region (350 km long), and the largest nested group (the five major contiguous megafans on the west slopes of the upper Zambezi Valley). We use new, SRTM-based topographic roughness data to discriminate various depositional surfaces within the flat N. Kalahari landscapes. We introduce the concepts of divide megafans, derived megafans, and fan-margin rivers. Conclusions. (i) Eleven megafan cones total an area of 190,000 sq km. (ii) Different controls on megafan size operate in the three component basins: in the Okavango rift structural controls become the prime constraint on megafan length by controlling basin dimensions. Megafans in the other les constricted basins appear to conform to classic relationships fan area, slope, and feeder-basin area. (iii) Active fans occupy the Okavango rift depression with one in the Owambo basin. The rest of the population are relict but recently active fans (surfaces are relict with respect to activity by the feeder river). (iv) Avulsive behavior of the formative river-axiomatic for the evolution of megafans-has resulted in repeated rearrangements of regional drainage, with likely effects in the study area well back into the Neogene. Divide megafans comprise the

  4. Simplified vibratory characterization of alluvial basins

    CERN Document Server

    Semblat, Jean-François; Duval, Anne-Marie

    2011-01-01

    For the analysis of seismic wave amplification, modal methods are interesting tools to study the modal properties of geological structures. Modal approaches mainly lead to information on such parameters as fundamental frequencies and eigenmodes of alluvial basins. For a specific alluvial deposit in Nice (France), a simplified modal approach involving the Rayleigh method is considered. This approach assumes a set of admissible shape functions for the eigenmodes and allows a fast estimation of the fundamental frequency of the basin. The agreement between modal numerical results and experimental ones is satisfactory. The simplified modal method then appears as an efficient mean for the global vibratory characterization of geological structures towards resonance.

  5. Basins of attraction for chimera states

    Science.gov (United States)

    Martens, Erik A.; Panaggio, Mark J.; Abrams, Daniel M.

    2016-02-01

    Chimera states—curious symmetry-broken states in systems of identical coupled oscillators—typically occur only for certain initial conditions. Here we analyze their basins of attraction in a simple system comprised of two populations. Using perturbative analysis and numerical simulation we evaluate asymptotic states and associated destination maps, and demonstrate that basins form a complex twisting structure in phase space. Understanding the basins’ precise nature may help in the development of control methods to switch between chimera patterns, with possible technological and neural system applications.

  6. Droplet Microfluidics for Virus Discovery

    Science.gov (United States)

    Rotem, Assaf; Cockrell, Shelley; Guo, Mira; Pipas, James; Weitz, David

    2012-02-01

    The ability to detect, isolate, and characterize an infectious agent is important for diagnosing and curing infectious diseases. Detecting new viral diseases is a challenge because the number of virus particles is often low and/or localized to a small subset of cells. Even if a new virus is detected, it is difficult to isolate it from clinical or environmental samples where multiple viruses are present each with very different properties. Isolation is crucial for whole genome sequencing because reconstructing a genome from fragments of many different genomes is practically impossible. We present a Droplet Microfluidics platform that can detect, isolate and sequence single viral genomes from complex samples containing mixtures of many viruses. We use metagenomic information about the sample of mixed viruses to select a short genomic sequence whose genome we are interested in characterizing. We then encapsulate single virions from the same sample in picoliter volume droplets and screen for successful PCR amplification of the sequence of interest. The selected drops are pooled and their contents sequenced to reconstruct the genome of interest. This method provides a general tool for detecting, isolating and sequencing genetic elements in clinical and environmental samples.

  7. Formation and evolution of Turpan-Hami Basin

    International Nuclear Information System (INIS)

    By the analysis of regional stress field, the evolutionary of Tur pan-Hami Basin can be divided into three phases. The paper focuses on the analysis of stress features, types of basin, environment and thickness of deposition. (author)

  8. Ferromanganese nodules from the Central Indian Ocean Basin

    Digital Repository Service at National Institute of Oceanography (India)

    Jauhari, P.; Pattan, J.N.

    In order to delineate a mine site for ferromanganese nodules, extensive surveys were conducted in Central Indian Ocean Basin. Mapping of the basin by multibeam swath bathymetry (Hydrosweep) has revealed many new bottom relief features...

  9. Geology of the Caloris basin, Mercury: a view from MESSENGER.

    Science.gov (United States)

    Murchie, Scott L; Watters, Thomas R; Robinson, Mark S; Head, James W; Strom, Robert G; Chapman, Clark R; Solomon, Sean C; McClintock, William E; Prockter, Louise M; Domingue, Deborah L; Blewett, David T

    2008-07-01

    The Caloris basin, the youngest known large impact basin on Mercury, is revealed in MESSENGER images to be modified by volcanism and deformation in a manner distinct from that of lunar impact basins. The morphology and spatial distribution of basin materials themselves closely match lunar counterparts. Evidence for a volcanic origin of the basin's interior plains includes embayed craters on the basin floor and diffuse deposits surrounding rimless depressions interpreted to be of pyroclastic origin. Unlike lunar maria, the volcanic plains in Caloris are higher in albedo than surrounding basin materials and lack spectral evidence for ferrous iron-bearing silicates. Tectonic landforms, contractional wrinkle ridges and extensional troughs, have distributions and age relations different from their counterparts in and around lunar basins, indicating a different stress history. PMID:18599772

  10. Basin and Range Province, Western US, USGS Grids #3

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — These grid files were used to produce gravity and basin depth maps of the Basin and Range Province, western United States. The maps show gravity values and modeled...

  11. Alluvial basin statistics of the Southwest Principal Aquifers (SWPA) study.

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — SWPA_alvbsn is a vector dataset of alluvial-fill basin statistics for the Southwest United States. Statistics for each basin include physical details such as area,...

  12. Scientists Try to Stop Another Deadly Virus

    Science.gov (United States)

    ... 158128.html Scientists Try to Stop Another Deadly Virus Junin, an Ebola-like disease in Argentina, has ... drug could offer a new weapon against the virus that causes Argentine hemorrhagic fever -- a potentially fatal ...

  13. A Literature Review of Zika Virus.

    Science.gov (United States)

    Plourde, Anna R; Bloch, Evan M

    2016-07-01

    Zika virus is a mosquitoborne flavivirus that is the focus of an ongoing pandemic and public health emergency. Previously limited to sporadic cases in Africa and Asia, the emergence of Zika virus in Brazil in 2015 heralded rapid spread throughout the Americas. Although most Zika virus infections are characterized by subclinical or mild influenza-like illness, severe manifestations have been described, including Guillain-Barre syndrome in adults and microcephaly in babies born to infected mothers. Neither an effective treatment nor a vaccine is available for Zika virus; therefore, the public health response primarily focuses on preventing infection, particularly in pregnant women. Despite growing knowledge about this virus, questions remain regarding the virus's vectors and reservoirs, pathogenesis, genetic diversity, and potential synergistic effects of co-infection with other circulating viruses. These questions highlight the need for research to optimize surveillance, patient management, and public health intervention in the current Zika virus epidemic. PMID:27070380

  14. Duck Virus Enteritis - A Contingency Plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Duck plague, also known as duck virus enteritis (DVE) is a highly contagious, extremely deadly epizootic virus with a potential for devastating continental...

  15. Influenza Type A Viruses and Subtypes

    Science.gov (United States)

    ... Research Making a Candidate Vaccine Virus Related Links Influenza Types Seasonal Avian Swine Variant Pandemic Other Get ... this? Submit What's this? Submit Button Past Newsletters Influenza Type A Viruses Language: English Español Recommend ...

  16. About Epstein-Barr Virus (EBV)

    Science.gov (United States)

    ... Search The CDC Epstein-Barr Virus and Infectious Mononucleosis Note: Javascript is disabled or is not supported ... Mono Home About Epstein-Barr Virus About Infectious Mononucleosis For Healthcare Providers Laboratory Testing References & Resources About ...

  17. Bats and Viruses: a Brief Review

    Institute of Scientific and Technical Information of China (English)

    Lin-Fa Wang

    2009-01-01

    Bats, probably the most abundant, diverse and geographically dispersed vertebrates on earth, have recently been shown to be the reservoir hosts of a number of emerging viruses responsible for severe human and livestock disease outbreaks. Flying foxes have been demonstrated to be the natural reservoir for Hendra and Nipah viruses. Evidence supporting the possibility of bats as potential reservoirs for SARS coronavirus (SARS-CoV) and Ebola virus has also been reported. The recent discovery of these viruses and other viruses occurring naturally in the bat population provides a unique insight into a diverse pool of potentially emergent and pathogenic viruses. The factors which influence the ability of zoonotic viruses to effectively cross the species barrier from bats to other animal populations are poorly understood. A brief review is provided here on the recently emerged bat viruses and on current and future strategies for research in this area.

  18. West Nile Virus Cases, 2006-present

    Data.gov (United States)

    U.S. Department of Health & Human Services — This dataset contains positive cases of West Nile virus found in humans by county of residence, 2006-present. Humans usually become infected with West Nile virus by...

  19. FAQ: West Nile Virus and Dead Birds

    Science.gov (United States)

    ... Education Public Service Videos West Nile Virus & Dead Birds Recommend on Facebook Tweet Share Compartir On this ... dead bird sightings to local authorities. How do birds get infected with West Nile virus? West Nile ...

  20. Porcine Reproductive and Respiratory Syndrome Virus (PRRSV)

    DEFF Research Database (Denmark)

    Kvisgaard, Lise Kirstine

    This PhD thesis presents the diversity of Porcine Reproductive and Respiratory Syndrome viruses (PRRSV) circulating in the Danish pig population. PRRS is a disease in pigs caused by the PRRS virus resulting in reproductive failures in sows and gilts and respiratory diseases in pigs . Due to genetic...... heterogeneity, PRRSV is divided into two genotypes, Type 1 and Type 2. Type 1 PRRS viruses are further divided into at least 3 subtypes. The virus evolves rapidly and reports of high pathogenic variants of both Type 1 and Type 2 appearing in Europe, North America, and Asia have been reported within recent years...... viruses showed both a higher diversity to the other Danish viruses and to the vaccine strain and one virus harbored the largest deletion in NSP2 reported in Danish Type 2 PRRSV. Manuscript IV is focusing on an experimental infection study in pigs with a Type 2 PRRS virus causing significant clinical...

  1. New Dengue Virus Vaccine Shows Promise

    Science.gov (United States)

    ... nih.gov/medlineplus/news/fullstory_157799.html New Dengue Virus Vaccine Shows Promise Research may also aid ... 16, 2016 (HealthDay News) -- An experimental vaccine against dengue -- the mosquito-borne virus behind a very painful ...

  2. Dengue Virus May Bolster Zika's Attack

    Science.gov (United States)

    ... page: https://medlineplus.gov/news/fullstory_159534.html Dengue Virus May Bolster Zika's Attack Prior exposure to ... 23, 2016 (HealthDay News) -- Prior exposure to the dengue fever virus may increase the severity of Zika ...

  3. Control of virus diseases of berry crops.

    Science.gov (United States)

    Martin, Robert R; Tzanetakis, Ioannis E

    2015-01-01

    Virus control in berry crops starts with the development of plants free of targeted pathogens, usually viruses, viroids, phytoplasmas, and systemic bacteria, through a combination of testing and therapy. These then become the top-tier plants in certification programs and are the source from which all certified plants are produced, usually after multiple cycles of propagation. In certification schemes, efforts are made to produce plants free of the targeted pathogens to provide plants of high health status to berry growers. This is achieved using a systems approach to manage virus vectors. Once planted in fruit production fields, virus control shifts to disease control where efforts are focused on controlling viruses or virus complexes that result in disease. In fruiting fields, infection with a virus that does not cause disease is of little concern to growers. Virus control is based on the use of resistance and tolerance, vector management, and isolation. PMID:25591882

  4. Nucleocytoplasmic Shuttling of Influenza A Virus Proteins

    Directory of Open Access Journals (Sweden)

    Jing Li

    2015-05-01

    Full Text Available Influenza viruses transcribe and replicate their genomes in the nuclei of infected host cells. The viral ribonucleoprotein (vRNP complex of influenza virus is the essential genetic unit of the virus. The viral proteins play important roles in multiple processes, including virus structural maintenance, mediating nucleocytoplasmic shuttling of the vRNP complex, virus particle assembly, and budding. Nucleocytoplasmic shuttling of viral proteins occurs throughout the entire virus life cycle. This review mainly focuses on matrix protein (M1, nucleoprotein (NP, nonstructural protein (NS1, and nuclear export protein (NEP, summarizing the mechanisms of their nucleocytoplasmic shuttling and the regulation of virus replication through their phosphorylation to further understand the regulation of nucleocytoplasmic shuttling in host adaptation of the viruses.

  5. General properties of grapevine viruses occurring in Hungary

    Directory of Open Access Journals (Sweden)

    Eszter Cseh

    2012-03-01

    Full Text Available The past fifty years important advances have been made in the field of grapevine virus research, including characterization of pathogens and control measurements. Still the occurrence of Grapevine fanleaf virus (GFLV, Arabis mosaic virus (ArMV, Tomato black ring virus (TBRV, Grapevine chrome mosaic virus (GCMV, Alfalfa mosaic virus (AMV, Grapevine Bulgarian latent virus (GBLV, Grapevine fleck virus (GFkV, Grapevine leafroll- associated viruses (GLRaV1-4, Grapevine virus A (GVA, Grapevine virus B (GVB and Grapevine rupestris stem pitting- associated virus (GRSPaV have been reported in Hungary and characterized by conventional methods as woody indexing, herbaceous indexing and serological methods. Among grapevine viruses the Grapevine line pattern virus (GLPV seems to be uncial; because it was reported only in Hungary. Causal agents of several grapevine diseases, like enation, vein necrosis and vein mosaic remained undiscovered. These virus-like diseases occurred only sporadically, without economic importance.

  6. SimBasin: serious gaming for integrated decision-making in the Magdalena-Cauca basin

    Science.gov (United States)

    Craven, Joanne; Angarita, Hector; Corzo, Gerald

    2016-04-01

    The Magdalena-Cauca macrobasin covers 24% of the land area of Colombia, and provides more than half of the country's economic potential. The basin is also home a large proportion of Colombia's biodiversity. These conflicting demands have led to problems in the basin, including a dramatic fall in fish populations, additional flooding (such as the severe nationwide floods caused by the La Niña phenomenon in 2011), and habitat loss. It is generally believed that the solution to these conflicts is to manage the basin in a more integrated way, and bridge the gaps between decision-makers in different sectors and scientists. To this end, inter-ministerial agreements are being formulated and a decision support system is being developed by The Nature Conservancy Colombia. To engage stakeholders in this process SimBasin, a "serious game", has been developed. It is intended to act as a catalyst for bringing stakeholders together, an illustration of the uncertainties, relationships and feedbacks in the basin, and an accessible introduction to modelling and decision support for non-experts. During the game, groups of participants are led through a 30 year future development of the basin, during which they take decisions about the development of the basin and see the impacts on four different sectors: agriculture, hydropower, flood risk, and environment. These impacts are displayed through seven indicators, which players should try to maintain above critical thresholds. To communicate the effects of uncertainty and climate variability, players see the actual value of the indicator and also a band of possible values, so they can see if their decisions have actually reduced risk or if they just "got lucky". The game works as a layer on top of a WEAP water resources model of the basin, adapted from a basin-wide model already created, so the fictional game basin is conceptually similar to the Magdalena-Cauca basin. The game is freely available online, and new applications are being

  7. New aerogeophysical study of the Eurasia Basin and Lomonosov Ridge: Implications for basin development

    DEFF Research Database (Denmark)

    Brozena, J.M.; Childers, V.A.; Lawver, L.A.;

    2003-01-01

    In 1998 and 1999, new aerogeophysical surveys of the Arctic Ocean's Eurasia Basin produced the first collocated gravity and magnetic measurements over the western half of the basin. These data increase the density and extend the coverage of the U.S. Navy acromagnetic data from the 1970s. The new...... Norwegian-Greenland Sea. With the opening of the Labrador Sea, Greenland began similar to200 km of northward movement relative to North America and eventually collided with Svalbard, Ellesmere Island, and the nascent Eurasia ocean basin. Both gravity and magnetic data sets reconstructed to times prior to...

  8. Morphometric analysis of Suketi river basin, Himachal Himalaya, India

    Indian Academy of Sciences (India)

    Anil M Pophare; Umesh S Balpande

    2014-10-01

    Suketi river basin is located in the Mandi district of Himachal Pradesh, India. It encompasses a central inter-montane valley and surrounding mountainous terrain in the Lower Himachal Himalaya. Morphometric analysis of the Suketi river basin was carried out to study its drainage characteristics and overall groundwater resource potential. The entire Suketi river basin has been divided into five sub-basins based on the catchment areas of Suketi trunk stream and its major tributaries. Quantitative assessment of each sub-basin was carried out for its linear, areal, and relief aspects. The analysis reveals that the drainage network of the entire Suketi river basin constitutes a 7th order basin. Out of five sub-basins, Kansa khad sub-basin (KKSB), Gangli khad sub-basin (GKSB) and Ratti khad sub-basin (RKSB) are 5th order subbasins. The Dadour khad sub-basin (DKSB) is 6th order sub-basin, while Suketi trunk stream sub-basin (STSSB) is a 7th order sub-basin. The entire drainage basin area reflects late youth to early mature stage of development of the fluvial geomorphic cycle, which is dominated by rain and snow fed lower order streams. It has low stream frequency (Fs) and moderate drainage density (Dd) of 2.69 km/km2. Bifurcation ratios (Rb) of various stream orders indicate that streams up to 3rd order are surging through highly dissected mountainous terrain, which facilitates high overland flow and less recharge into the subsurface resulting in low groundwater potential in the zones of 1st, 2nd, and 3rd order streams of the Suketi river basin. The circulatory ratio (Rc) of 0.65 and elongation ratio (Re) of 0.80 show elongated nature of the Suketi river basin, while infiltration number (If) of 10.66 indicates dominance of relief features and low groundwater potential in the high altitude mountainous terrain. The asymmetry factor (Af) of Suketi river basin indicates that the palaeo-tectonic tilting, at drainage basin scale, was towards the downstream right side of the

  9. Evolution of Computer Virus Concealment and Anti-Virus Techniques: A Short Survey

    CERN Document Server

    Rad, Babak Bashari; Ibrahim, Suhaimi

    2011-01-01

    This paper presents a general overview on evolution of concealment methods in computer viruses and defensive techniques employed by anti-virus products. In order to stay far from the anti-virus scanners, computer viruses gradually improve their codes to make them invisible. On the other hand, anti-virus technologies continually follow the virus tricks and methodologies to overcome their threats. In this process, anti-virus experts design and develop new methodologies to make them stronger, more and more, every day. The purpose of this paper is to review these methodologies and outline their strengths and weaknesses to encourage those are interested in more investigation on these areas.

  10. K West basin isolation barrier leak rate test

    Energy Technology Data Exchange (ETDEWEB)

    Whitehurst, R.; McCracken, K.; Papenfuss, J.N.

    1994-10-31

    This document establishes the procedure for performing the acceptance test on the two isolation barriers being installed in K West basin. This acceptance test procedure shall be used to: First establish a basin water loss rate prior to installation of the two isolation barriers between the main basin and the discharge chute in K-Basin West. Second, perform an acceptance test to verify an acceptable leakage rate through the barrier seals.

  11. K West basin isolation barrier leak rate test

    International Nuclear Information System (INIS)

    This document establishes the procedure for performing the acceptance test on the two isolation barriers being installed in K West basin. This acceptance test procedure shall be used to: First establish a basin water loss rate prior to installation of the two isolation barriers between the main basin and the discharge chute in K-Basin West. Second, perform an acceptance test to verify an acceptable leakage rate through the barrier seals

  12. Hydronomics and terranomics in the Nyando basin of Western Kenya.

    OpenAIRE

    Onyango, Leah; Swallow, Brent; Meinzen-Dick, Ruth

    2005-01-01

    This paper uses the concepts of hydronomics as systems of rules that define water management and terranomics as systems of rules that define land management and explores their linkages in rainfed agriculture and irrigation areas in the Nyando basin. The upper reaches of the basin have experienced a change from large scale commercial farming to more intensive small holder farming while in the flood prone lower reaches of the basin several irrigation schemes have been set up. The basin has a co...

  13. Citrus tristeza virus-host interactions

    OpenAIRE

    Dawson, William O.; Garnsey, Stephen M.; Satyanarayana eTatineni; Folimonova, Svetlana Y.; Scott J Harper; S eGowda

    2013-01-01

    Citrus tristeza virus (CTV) is a phloem-limited virus whose natural host range is restricted to citrus and related species. Although the virus has killed millions of trees, almost destroying whole industries, and continually limits production in many citrus growing areas, most isolates are mild or symptomless in most of their host range. There is little understanding of how the virus causes severe disease in some citrus and none in others. Movement and distribution of CTV differs considerably...

  14. Inhibition of interferon signaling by dengue virus

    OpenAIRE

    Muñoz-Jordán, Jorge L.; Sánchez-Burgos, Gilma G.; Laurent-Rolle, Maudry; García-Sastre, Adolfo

    2003-01-01

    Dengue virus is a worldwide-distributed mosquito-borne flavivirus with a positive strand RNA genome. Its transcribed polyprotein is cleaved by host- and virus-encoded peptidases into 10 proteins, some of which are of unknown function. Although dengue virus-infected cells seem to be resistant to the antiviral action of IFN, the viral products that mediate this resistance are unknown. Therefore, we have analyzed the ability of the 10 dengue virus-encoded proteins to antagonize the IFN response....

  15. Viruses and prions of Saccharomyces cerevisiae

    OpenAIRE

    Wickner, Reed B.; Fujimura, Tsutomu; Esteban, Rosa

    2013-01-01

    Saccharomyces cerevisiae has been a key experimental organism for the study of infectious diseases, including dsRNA viruses, ssRNA viruses, and prions. Studies of the mechanisms of virus and prion replication, virus structure, and structure of the amyloid filaments that are the basis of yeast prions have been at the forefront of such studies in these classes of infectious entities. Yeast has been particularly useful in defining the interactions of the infectious elements with cellular compone...

  16. Viruses and Sialic Acids: Rules of Engagement

    OpenAIRE

    Neu, Ursula; Bauer, Johannes; Stehle, Thilo

    2011-01-01

    Viral infections are initiated by specific attachment of a virus particle to receptors at the surface of the host cell. For many viruses, these receptors are glycans that are linked to either a protein or a lipid. Glycans terminating in sialic acid and its derivatives serve as receptors for a large number of viruses, including several human pathogens. In combination with glycan array analyses, structural analyses of complexes of viruses with sialylated oligosaccharides have provided insights ...

  17. RNA virus genomics: a world of possibilities

    OpenAIRE

    Edward C Holmes

    2009-01-01

    The increasing availability of complete genome sequences of RNA viruses has the potential to shed new light on fundamental aspects of their biology. Here, I use case studies of 3 RNA viruses to explore the impact of genomic sequence data, with particular emphasis on influenza A virus. Notably, the studies of RNA virus genomics undertaken to date largely focused on issues of evolution and epidemiology, and they have given these disciplines new impetus. However, genomic data have so far made fe...

  18. Inhibition of Interferons by Ectromelia Virus

    OpenAIRE

    Smith, Vincent P.; Alcami, Antonio

    2002-01-01

    Ectromelia virus (EV) is an orthopoxvirus (OPV) that causes mousepox, a severe disease of laboratory mice. Mousepox is a useful model of OPV infection because EV is likely to be a natural mouse pathogen, unlike its close relatives vaccinia virus (VV) and variola virus. Several studies have highlighted the importance of mouse interferons (IFNs) in resistance to and recovery from EV infection, but little is known of the anti-IFN strategies encoded by the virus itself. We have determined that 12...

  19. Characteristics of Filoviridae: Marburg and Ebola Viruses

    Science.gov (United States)

    Beer, Brigitte; Kurth, Reinhard; Bukreyev, Alexander

    Filoviruses are enveloped, nonsegmented negative-stranded RNA viruses. The two species, Marburg and Ebola virus, are serologically, biochemically, and genetically distinct. Marburg virus was first isolated during an outbreak in Europe in 1967, and Ebola virus emerged in 1976 as the causative agent of two simultaneous outbreaks in southern Sudan and northern Zaire. Although the main route of infection is known to be person-to-person transmission by intimate contact, the natural reservoir for filoviruses still remains a mystery.

  20. The interferon sensitivity of selected porcine viruses.

    OpenAIRE

    Derbyshire, J. B.

    1989-01-01

    The objective of this study was to compare the sensitivity of 11 porcine viruses to the antiviral effects of porcine interferon-alpha in serum from piglets which had been infected 19 h previously with transmissible gastroenteritis virus, and of porcine interferon-beta prepared in PK-15 cells by induction with polyinosinic:polycytidylic acid, in yield reduction assays in pig kidney cells which were treated with interferon before virus challenge, and both before and after virus challenge. The m...

  1. Novel hemagglutinin-based influenza virus inhibitors

    OpenAIRE

    Shen, Xintian; Zhang, Xuanxuan; Liu, Shuwen

    2013-01-01

    Influenza virus has caused seasonal epidemics and worldwide pandemics, which caused tremendous loss of human lives and socioeconomics. Nowadays, only two classes of anti-influenza drugs, M2 ion channel inhibitors and neuraminidase inhibitors respectively, are used for prophylaxis and treatment of influenza virus infection. Unfortunately, influenza virus strains resistant to one or all of those drugs emerge frequently. Hemagglutinin (HA), the glycoprotein in influenza virus envelope, plays a c...

  2. [Zika virus, an emerging threat].

    Science.gov (United States)

    Salinas, Sara; Foulongne, Vincent; Loustalot, Fabien; Fournier-Wirth, Chantal; Molès, Jean-Pierre; Briant, Laurence; Nagot, Nicolas; Van de Perre, Philippe; Simonin, Yannick

    2016-04-01

    Zika virus, discovered in 1947, is particularly publicized because of its involvement in a major epidemic that began in 2015 and which epicenter is located in Latin America, mainly in Brazil. In the majority of cases (70-80 %) the infection is asymptomatic, however in some patients, moderate fever, skin rash, conjunctivitis and myalgia may occur. More alarming, neurological complications are reported, in particular cases of microcephaly probably resulting from the infection of women in the first or second trimester of pregnancy. Moreover, Guillain-Barré syndromes have also been identified in patients whose infection was confirmed. The extent of the current outbreak reveals the very primitive state of knowledge about the pathophysiology of this virus. Thus, a global effort is being undertaken in order to quickly characterize the molecular interaction of the virus with human cells, but also to develop specific diagnostic assays and vaccinal approaches. PMID:27137695

  3. Virus Dynamics on Starlike Graphs

    CERN Document Server

    Becker, Thealexa; Kontorovich, Leonid Aryeh; Miller, Steven J; Ravikumar, Pradeep; Shen, Karen

    2011-01-01

    The field of epidemiology has presented fascinating and relevant questions for mathematicians, primarily concerning the spread of viruses in a community. The importance of this research has greatly increased over time as its applications have expanded to also include studies of electronic and social networks and the spread of information and ideas. We study virus propagation on a non-linear hub and spoke graph (which models well many airline networks). We determine the long-term behavior as a function of the cure and infection rates, as well as the number of spokes n. For each n we prove the existence of a critical threshold relating the two rates. Below this threshold, the virus always dies out; above this threshold, all non-trivial initial conditions iterate to a unique non-trivial steady state. We end with some generalizations to other networks.

  4. Hepatitis Virus Infections in Poultry.

    Science.gov (United States)

    Yugo, Danielle M; Hauck, Ruediger; Shivaprasad, H L; Meng, Xiang-Jin

    2016-09-01

    Viral hepatitis in poultry is a complex disease syndrome caused by several viruses belonging to different families including avian hepatitis E virus (HEV), duck hepatitis B virus (DHBV), duck hepatitis A virus (DHAV-1, -2, -3), duck hepatitis virus Types 2 and 3, fowl adenoviruses (FAdV), and turkey hepatitis virus (THV). While these hepatitis viruses share the same target organ, the liver, they each possess unique clinical and biological features. In this article, we aim to review the common and unique features of major poultry hepatitis viruses in an effort to identify the knowledge gaps and aid the prevention and control of poultry viral hepatitis. Avian HEV is an Orthohepevirus B in the family Hepeviridae that naturally infects chickens and consists of three distinct genotypes worldwide. Avian HEV is associated with hepatitis-splenomegaly syndrome or big liver and spleen disease in chickens, although the majority of the infected birds are subclinical. Avihepadnaviruses in the family of Hepadnaviridae have been isolated from ducks, snow geese, white storks, grey herons, cranes, and parrots. DHBV evolved with the host as a noncytopathic form without clinical signs and rarely progressed to chronicity. The outcome for DHBV infection varies by the host's ability to elicit an immune response and is dose and age dependent in ducks, thus mimicking the pathogenesis of human hepatitis B virus (HBV) infections and providing an excellent animal model for human HBV. DHAV is a picornavirus that causes a highly contagious virus infection in ducks with up to 100% flock mortality in ducklings under 6 wk of age, while older birds remain unaffected. The high morbidity and mortality has an economic impact on intensive duck production farming. Duck hepatitis virus Types 2 and 3 are astroviruses in the family of Astroviridae with similarity phylogenetically to turkey astroviruses, implicating the potential for cross-species infections between strains. Duck astrovirus (DAstV) causes

  5. Characterization of Ebola Virus Entry by Using Pseudotyped Viruses: Identification of Receptor-Deficient Cell Lines

    OpenAIRE

    Wool-Lewis, Rouven J.; Bates, Paul

    1998-01-01

    Studies analyzing Ebola virus replication have been severely hampered by the extreme pathogenicity of this virus. To permit analysis of the host range and function of the Ebola virus glycoprotein (Ebo-GP), we have developed a system for pseudotyping these glycoproteins into murine leukemia virus (MLV). This pseudotyped virus, MLV(Ebola), can be readily concentrated to titers which exceed 5 × 106 infectious units/ml and is effectively neutralized by antibodies specific for Ebo-GP. Analysis of ...

  6. Virus-Like Vesicle-Based Therapeutic Vaccine Vectors for Chronic Hepatitis B Virus Infection

    OpenAIRE

    Tracy D Reynolds; Buonocore, Linda; Rose, Nina F.; Rose, John K.; Robek, Michael D.

    2015-01-01

    More than 500,000 people die each year from the liver diseases that result from chronic hepatitis B virus (HBV) infection. Therapeutic vaccines, which aim to elicit an immune response capable of controlling the virus, offer a potential new treatment strategy for chronic hepatitis B. Recently, an evolved, high-titer vaccine platform consisting of Semliki Forest virus RNA replicons that express the vesicular stomatitis virus glycoprotein (VSV G) has been described. This platform generates virus...

  7. Antigen mimicry involving measles virus hemagglutinin and human respiratory syncytial virus nucleoprotein.

    OpenAIRE

    Norrby, E; Sheshberadaran, H; Rafner, B

    1986-01-01

    Intergenic antigenic relationships between measles virus and respiratory syncytial (RS) virus-specific structural components were studied by using monoclonal antibodies. Of 75 monoclonal antibodies against these components, only one, an anti-measles virus hemagglutinin monoclonal antibody, cross-reacted. Immunofluorescence analysis of measles virus- and RS virus-infected cells with this monoclonal antibody showed qualitatively different staining patterns which indicated that the antigen invol...

  8. Influenza A virus targets a cGAS-independent STING pathway that controls enveloped RNA viruses

    OpenAIRE

    Holm, Christian K.; Rahbek, Stine H.; Gad, Hans Henrik; Bak, Rasmus O.; Jakobsen, Martin R; Jiang, Zhaozaho; Hansen, Anne Louise; Jensen, Simon K.; Sun, Chenglong; Thomsen, Martin K.; Laustsen, Anders; Nielsen, Camilla G.; Severinsen, Kasper; Xiong, Yingluo; Burdette, Dara L.

    2016-01-01

    Stimulator of interferon genes (STING) is known be involved in control of DNA viruses but has an unexplored role in control of RNA viruses. During infection with DNA viruses STING is activated downstream of cGAMP synthase (cGAS) to induce type I interferon. Here we identify a STING-dependent, cGAS-independent pathway important for full interferon production and antiviral control of enveloped RNA viruses, including influenza A virus (IAV). Further, IAV interacts with STING through its conserve...

  9. More Effective Purifying Selection on RNA Viruses than in DNA Viruses

    OpenAIRE

    Hughes, Austin L.; Hughes, Mary Ann K.

    2007-01-01

    Analysis of the pattern of nucleotide diversity in 222 independent viral sequence datasets showed the prevalence of purifying selection. In spite of the higher mutation rate of RNA viruses, our analyses revealed stronger evidence of the action of purifying selection in RNA viruses than in DNA viruses. The ratio of nonsynonymous to synonymous nucleotide diversity was significantly lower in RNA viruses than in DNA viruses, indicating that nonsynonymous mutations have been removed at a greater r...

  10. Integrated Worker Radiation Dose Assessment for the K Basins

    International Nuclear Information System (INIS)

    This report documents an assessment of the radiation dose workers at the K Basins are expected to receive in the process of removing spent nuclear fuel from the storage basins. The K Basins (K East and K West) are located in the Hanford 100K Area

  11. Detailed bathymetric surveys in the central Indian Basin

    Digital Repository Service at National Institute of Oceanography (India)

    Kodagali, V.N.; KameshRaju, K.A.; Ramprasad, T.; George, P.; Jaisankar, S.

    Over 420,000 line kilometers of echo-sounding data was collected in the Central Indian Basin. This data was digitized, merged with navigation data and a detailed bathymetric map of the Basin was prepared. The Basin can be broadly classified...

  12. 100KE/KW fuel storage basin surface volumetric factors

    International Nuclear Information System (INIS)

    This Supporting Document presents calculations of surface Volumetric factors for the 100KE and 100KW Fuel Storage Basins. These factors relate water level changes to basin loss or additions of water, or the equivalent water displacement volumes of objects added to or removed from the basin

  13. The fate of evaporated water from the Ganges basin

    NARCIS (Netherlands)

    Tuinenburg, O.A.; Hutjes, R.W.A.; Kabat, P.

    2012-01-01

    This research studies river basin moisture recycling rates in order to determine the atmospheric part of the water cycle and the influence of the land surface there on. For river basins in India (Ganges and Indus), the fraction of evaporation that falls again as precipitation in the same river basin

  14. Riddled Basins of Attraction for Synchronized Type-I Intermittency

    DEFF Research Database (Denmark)

    Mancher, Martin; Nordahn, Morten; Mosekilde, Erik;

    1998-01-01

    Chaotic mortion resticted to an invariant subspace of total phase space may be associated with basins of attraction that are riddled with holes belonging to the basin of another limiting state. We study the emergence of such basins of two coupled one-dimensional maps, each exhibiting type...

  15. New Progress in Petroleum Exploration of Tarim Basin

    Institute of Scientific and Technical Information of China (English)

    Liang Digang

    1994-01-01

    @@ Basin Situation Tarim Basin located in the northwest of China, is one of the few largest basins in the world that haven't been well-explored, covering an area of 560 000km2, a little bit larger than that of France.

  16. Emerging viruses in the genus Comovirus

    Czech Academy of Sciences Publication Activity Database

    Petrzik, Karel; Koloniuk, Igor

    2010-01-01

    Roč. 40, č. 2 (2010), s. 290-292. ISSN 0920-8569 R&D Projects: GA ČR GA522/07/0053 Institutional research plan: CEZ:AV0Z50510513 Keywords : Capsid proteins * plant virus * Radish mosaic virus * Turnip ringspot virus Subject RIV: EE - Microbiology, Virology Impact factor: 1.693, year: 2010

  17. Emerging foodborne and agriculture-related viruses

    Science.gov (United States)

    Viruses rapidly evolve and can emerge in unpredictable ways. Mechanisms by which food-borne viruses may enter human populations and become pathogens is discussed. It is known the majority of viruses emerge from zoonotic animal reservoirs, often by adapting and infecting intermediate hosts, such as ...

  18. Ebola Virus Persistence in Semen Ex Vivo

    OpenAIRE

    Fischer, Robert J.; Judson, Seth; Miazgowicz, Kerri; Bushmaker, Trent; Munster, Vincent J.

    2016-01-01

    On March 20, 2015, a case of Ebola virus disease was identified in Liberia that most likely was transmitted through sexual contact. We assessed the efficiency of detecting Ebola virus in semen samples by molecular diagnostics and the stability of Ebola virus in ex vivo semen under simulated tropical conditions.

  19. Viruses infecting Brassicas in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Špak, Josef; Kubelková, Darina

    Bonn : DPG and BBA, 2002. s. 50. [Joint Conference of the International Working Groups on Legume Viruses and Vegetale Viruses /1./. 04.08.2002-09.08.2002, Bonn] Institutional research plan: CEZ:AV0Z5051902 Keywords : plant pathology * viruses Subject RIV: EE - Microbiology, Virology

  20. Virus infections of honeybees Apis Mellifera

    Directory of Open Access Journals (Sweden)

    Giuseppina Tantillo

    2015-09-01

    Full Text Available The health and vigour of honeybee colonies are threatened by numerous parasites (such as Varroa destructor and Nosema spp. and pathogens, including viruses, bacteria, protozoa. Among honeybee pathogens, viruses are one of the major threats to the health and wellbeing of honeybees and cause serious concern for researchers and beekeepers. To tone down the threats posed by these invasive organisms, a better understanding of bee viral infections will be of crucial importance in developing effective and environmentally benign disease control strategies. Here we summarize recent progress in the understanding of the morphology, genome organization, transmission, epidemiology and pathogenesis of eight honeybee viruses: Deformed wing virus (DWV and Kakugo virus (KV; Sacbrood virus (SBV; Black Queen cell virus (BQCV; Acute bee paralysis virus (ABPV; Kashmir bee virus (KBV; Israeli Acute Paralysis Virus (IAPV; Chronic bee paralysis virus (CBPV. The review has been designed to provide researchers in the field with updated information about honeybee viruses and to serve as a starting point for future research.

  1. Lagos bat virus in Kenya.

    Science.gov (United States)

    Kuzmin, Ivan V; Niezgoda, Michael; Franka, Richard; Agwanda, Bernard; Markotter, Wanda; Beagley, Janet C; Urazova, Olga Y; Breiman, Robert F; Rupprecht, Charles E

    2008-04-01

    During lyssavirus surveillance, 1,221 bats of at least 30 species were collected from 25 locations in Kenya. One isolate of Lagos bat virus (LBV) was obtained from a dead Eidolon helvum fruit bat. The virus was most similar phylogenetically to LBV isolates from Senegal (1985) and from France (imported from Togo or Egypt; 1999), sharing with these viruses 100% nucleoprotein identity and 99.8 to 100% glycoprotein identity. This genome conservancy across space and time suggests that LBV is well adapted to its natural host species and that populations of reservoir hosts in eastern and western Africa have sufficient interactions to share pathogens. High virus concentrations, in addition to being detected in the brain, were detected in the salivary glands and tongue and in an oral swab, suggesting that LBV is transmitted in the saliva. In other extraneural organs, the virus was generally associated with innervations and ganglia. The presence of infectious virus in the reproductive tract and in a vaginal swab implies an alternative opportunity for transmission. The isolate was pathogenic for laboratory mice by the intracerebral and intramuscular routes. Serologic screening demonstrated the presence of LBV-neutralizing antibodies in E. helvum and Rousettus aegyptiacus fruit bats. In different colonies the seroprevalence ranged from 40 to 67% and 29 to 46% for E. helvum and R. aegyptiacus, respectively. Nested reverse transcription-PCR did not reveal the presence of viral RNA in oral swabs of bats in the absence of brain infection. Several large bat roosts were identified in areas of dense human populations, raising public health concerns for the potential of lyssavirus infection. PMID:18305130

  2. Hepatitis C Virus Genotypes

    Directory of Open Access Journals (Sweden)

    Kayhan Azadmanesh

    2005-09-01

    Full Text Available IntroductionHepatitis C virus (HCV is an important cause of chronic liver disease. HCV causes 20% of acute hepatitis cases, 70% of all chronic hepatitis cases, 40% of all cases of liver cirrhosis, 60% of hepatocellular carcinomas, and 30% of liver transplants in Europe(1. It is also recognized as the leading cause of liver transplantation in the world(2. Only 20% of infected individuals will recover from this viral infection, while the rest become chronically infected(3. While the majority of chronically infected individuals never exhibit symptoms, approximately 10-30% of these patients will eventually develop cirrhosis or hepatocellular carcinoma, both of which are associated with significant morbidity and mortality(4.More than 170 million people worldwide are chronically infected with HCV. According to WHO report in 2002, chronic liver diseases were responsible for 1.4 million deaths, including 796,000 due to cirrhosis and 616,000 due to primary liver cancer. At least 20% of these deaths are probably attributable to HCV infection- more than 280,000 deaths(5, 6. The prevalence of chronic HCV infection in general population varies greatly in different parts of the world, being estimated between 0.1 and 5%, with a peak prevalence of 20- 25% in Egypt. HCV prevalence seems to be less than 1% in Iran, which is much lower than most of the neighboring countries(7. HCV was the first virus discovered by molecular cloning method without the direct use of biologic or biophysical methods. This was accomplished by extracting, copying into cDNA, and cloning all the nucleic acid from the plasma of a chimpanzee infected with non- A, non-B hepatitis by contaminated factor XIII concentrate(8. The HCV genome is a positive-sense, singlestranded RNA genome approximately 10 kb long. It has marked similarities to those of members of the genera Pestivirus and Flavivirus. Different HCV isolates from around the world show substantial nucleotide sequence variability

  3. Basin development and tectonic history of the Llanos Basin, Eastern Cordillera, and Middle Magdalena Valley, Colombia

    Energy Technology Data Exchange (ETDEWEB)

    Cooper, M.A. [PanCanadian Petroleum, Calgary, Alberta (Canada); Addison, F.T.; Alvarez, R. [BP Exploration Ltd., Bogota (Colombia)] [and others

    1995-10-01

    The Middle Magdalena Valley, Eastern Cordillera, and Llanos basin constituted a major regional sedimentary basin from the Triassic to the middle Miocene. Basin development began during the Triassic to the earliest Cretaceous with a synrift megasequence related to the separation of North and South America in the proto-Caribbean. The synrift megasequence began with deposition in a continental environment that became paralic and shallow marine in the Early Cretaceous. Basin development continued into the Cretaceous in a back-arc setting east of the Andean subduction zone. The back-arc megasequence was dominated by shallow-marine sedimentation and produced an excellent regional source rock during the Turonian-Coniacian. Marine deposition was abruptly terminated during the early Maastrichtian due to the final accretion of the Western Cordillera.

  4. The Sequence Architecture of Volcanic Basin Fillings- An Example From Xujiaweizi Faulted Depression In Songliao Basin

    Institute of Scientific and Technical Information of China (English)

    CHENG Rihui; LIU Wanzhu; SHAN Xuanlong; WANG Pujun; CHEN Shumin; QU Yongbao

    2001-01-01

    The basin filling geometric pattern of volcanic eruptive rocks depends on both of the eruptive locations in a basin and structural styles of fault terraces. It is divided into three types by eruptive locations and occurrences of eruptive rocks, including the pattern of eruption along fault and occurrence (PEAFO), the pattern of eruption on footwall of a fault and occurrence (PEOFO) and the pattern of eruption on hangingwall of fault and occurrence (PEOHO) in Xujiaweizi fault depression of Songliao basin, Northeast of China. Those basin filling patterns of volcanic eruptive rocks are of specific geometric characteristics controlling or affecting sedimentation, geometry of sedimentary body and sequence architecture during a sequence evolution. The study shows that the volcanic rocks developed at different stages of lowstand, transgressive and highstand can give different controls or affects on the sequence architecture.

  5. Klamath Basin Restoration Agreement Off-Project Water Program Sub-basin Analysis Flow Statistics

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — VERSION 5/15/2012 HYDROLOGICAL INFORMATION PRODUCTS FOR THE OFF-PROJECT WATER PROGRAM OF THE KLAMATH BASIN RESTORATION AGREEMENT By Daniel T. Snyder, John C....

  6. Klamath Basin Restoration Agreement Off-Project Water Program Sub-basin Analysis Flow Statistics

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Hydrological Information Products for the Off-Project Water Program of the Klamath Basin Restoration Agreement U.S. Geological Survey Open-File Report 2012-1199...

  7. Basin Subsegments from LDEQ source data, Geographic NAD83, LOSCO (2004) [basin_subsegments_LDEQ_2004

    Data.gov (United States)

    Louisiana Geographic Information Center — This is a polygon data set of watershed basin subsegments for Louisiana. The dataset was developed for the LDEQ Office of Water Resources' watershed assessment and...

  8. Activation analysis in virus research

    International Nuclear Information System (INIS)

    Nucleic acids contain various amounts of trace elements. With divalent cations tobacco mosaic virus ribonucleic acid (TMV-RNA) undergoes changes in optical density at 258 mμ in both optical rotation and in sedimentation behaviour. These changes suggested the transformation from a random coil to a more orderly configuration. The connection between trace elements and the biological activity of TMV-RNA has been investigated. However, the relationship between metal ions and the virus infection process has not received much attention. This subject is discussed briefly in this paper. 8 refs

  9. Development of indicators for assessment of Lake Malawi Basin in an Integrated Lake Basin Management (ILBM) framework

    OpenAIRE

    Clara Limbitso Chidammodzi; Victor Shiholo Muhandiki

    2015-01-01

    This paper sought to understand the current state of the management environment of Lake Malawi Basin, deduce a lake vision and develop indicators for assessing Integrated Lake Basin Management (ILBM) in the lake basin. The premise of the study was that targeted indicators are necessary to effectively monitor the lake basin and manage it sustainably. The study focused on the Malawian side of the lake. Interviews, field observations and review of existing lake management and indicator developme...

  10. Water Allocation Challenges in Rural River Basins: A Case Study from the Walawe River Basin,Sri Lanka

    OpenAIRE

    Weragala, D. K. Neelanga

    2010-01-01

    This dissertation evaluates the water allocation challenges in the rural river basins of the developing world, where demands are growing and the supply is limited. While many of these basins have yet to reach the state of closure, their water users are already experiencing water shortages. Agricultural crop production in rural river basins of the developing world plays a major role in ensuring food security. However, irrigation as the major water consumer in these basins has low water use eff...

  11. Fostering Payments for Environmental Services (PES) in the Danube Basin: Why the Danube Basin and why payments for environmental services?

    OpenAIRE

    Beckmann, A.; Gutman, P.; Long, T.

    2005-01-01

    This publication describes the characteristics of the Danube basin and reviews the history of land use and ecological health in different parts of the basin. Several studies in recent years have identified numerous threats to the basin from development, industry, agriculture, tourism, and land management practices. These threaten the fragile ecosystems that support biodiversity and provide valuable environmental services. Although Danube basin countries have implemented programs to address so...

  12. Deforestation Trends in the Congo Basin : Agriculture

    OpenAIRE

    Hourticq, Joel; Megevand, Carole; Tollens, Eric; Wehkamp, Johanna; Dulal, Hari

    2013-01-01

    The Congo Basin represents 70 percent of the African continent's forest cover and constitutes a large portion of Africa's biodiversity. Agricultural development is a central lever to help people out of poverty, as well as a key driver of deforestation. Forest-friendly agricultural development is a challenge for the region. This report describes some ways forest-friendly agricultural develo...

  13. Deep controls on intraplate basin inversion

    DEFF Research Database (Denmark)

    Nielsen, S.B.; Stephenson, Randell Alexander; Schiffer, Christian

    2014-01-01

    favourably orientated with respect to pre-existing structures in the lithosphere. Furthermore, stresses derived from lithospheric potential energy variations as well as those from plate boundary forces must be taken into account in order to explain intraplate seismicity and deformation such as basin...

  14. A layered moldavite from the Cheb Basin

    Czech Academy of Sciences Publication Activity Database

    Skála, Roman; Čada, M.

    Houston: Lunar and Planetary Institute, 2006. [Lunar and Planetary Science Conference /37./. 12.03.2006-17.03.2006, League City] R&D Projects: GA ČR(CZ) GA205/05/2593 Institutional research plan: CEZ:AV0Z30130516 Keywords : moldavite * CHeb basin Subject RIV: DB - Geology ; Mineralogy

  15. Analytical framework for River Basin Management Planning

    DEFF Research Database (Denmark)

    Nielsen, Helle Ørsted; Pedersen, Anders Branth; Frederiksen, Pia;

    This paper proposes a framework for the analysis of the planning approach, and the processes and procedures, which have been followed in the preparation of the River Basin District Management Plans (RBMPs). Different countries have different policy and planning traditions and -styles. Developed o...

  16. Alboran Basin, southern Spain - Part I: Geomorphology

    Energy Technology Data Exchange (ETDEWEB)

    Munoz, A. [Secretaria General de Pesca Maritima, Corazon de Maria, 8, 28002 Madrid (Spain); Ballesteros, M.; Rivera, J.; Acosta, J. [Instituto Espanol de Oceanografia, Corazon de Maria, 8, 28002 Madrid (Spain); Montoya, I. [Universidad Juan Carlos I, Campus de Mostoles, Madrid (Spain); Uchupi, E. [Woods Hole Oceanographic Institution, Woods Hole, MA 02543 (United States)

    2008-01-15

    Bathymetric, 3D relief and shaded relief maps created from multibeam echo-sounding data image the morphology of the Alboran Basin, a structural low along the east-west-trending Eurasian-African plates boundary. Topographic features in the basin are the consequence of volcanism associated with Miocene rifting, rift and post-rift sedimentation, and recent faulting resulting from the convergence of the African-Eurasian plates. Pleistiocene glacially induced regressions/transgressions when the sea level dropped to about 150 m below its present level gas seeps and bottom currents. Recent faulting and the Pleistocene transgressions/regressions led to mass-wasting, formation of turbidity currents and canyon erosion on the basin's slopes. Recent fault traces at the base of the northern basin slope have also served as passageways for thermogenic methane, the oxidation of which by bacteria led to the formation of carbonate mounds along the fault intercepts on the sea floor. Expulsion of thermogenic or biogenic gas has led to the formation of pockmarks; erosion by bottom currents has resulted in the formation of moats around seamounts and erosion of the seafloor of the Alboran Ridge and kept the southern edge of the 36 10'N high sediment free. (author)

  17. Summary status of K Basins sludge characterization

    International Nuclear Information System (INIS)

    A number of activities are underway as part of the Spent Nuclear Fuels Project (SNFP) related to the processing and disposing of sludge in the 105-K Basins (K Basins). Efforts to rigorously define data requirements for these activities are being made using the Data Quality Objectives (DQO) process. Summaries of current sludge characterization data are required to both help support this DQO process and to allow continued progress with on-going engineering activities (e.g., evaluations of disposal alternatives). This document provides the status of K Basins sludge characterization data currently available to the Nuclear Fuel Evaluations group. This group is tasked by the SNFP to help develop and maintain the characterization baseline for the K Basins. The specific objectives of this document are to: (1) provide a current summary (and set of references) of sludge characterization data for use by SNFP initiatives, to avoid unnecessary duplication of effort and to support on-going initiatives; (2) submit these data to an open forum for review and comment, and identify additional sources of significant data that may be available; (3) provide a summary of current data to use as part of the basis to develop requirements for additional sludge characterization data through the DQO process; (4) provide an overview of the intended activities that will be used to develop and maintain the sludge characterization baseline

  18. Synthetical Approach to the Romanian Tisa Basin

    OpenAIRE

    POMPEI COCEAN; ADRIANA VARTANOFF

    2007-01-01

    This issue of the Romanian Review of Regional Studies is dedicated to the synthesis of the project entitled “The analysis of the present state of territorial development tendencies in the Romanian Tisa Basin”, representing the first stage of research, at national level, of the development phenomena within the entire hydrographical basin, approached together by Romania, Hungary, Slovakia, Ukraine and Serbia.

  19. Structure and Hydrocarbons in Junggar Basin

    Institute of Scientific and Technical Information of China (English)

    张庆春; 田在艺

    2002-01-01

    Having undergone four basin-forming tectonic cycles--Hercynian, Indosinian, Yanshanian, and Himalayan, the Junggar basin becomes a multi-cyclic superposed basin of old and hard mediun block pattern. Its multi-cyclic tectonic and sedimentary evolution results in five series of hydrocarbon source rock formations--Carboniferous, Permian, Upper Triassic, Middle-lower Jurassic, and Lower Tertiary, correspondingly forming five petroleum generation systems, of which the Permian and Middle-lower Jurassic petroleum generation systems are the most important with the highest exploration degree. Hydrocarbons are controlled by basin structure as follows: 1) Hydrocarbon accumulations are controlled by the structural styles of paleo-uplifts, paleo-overthrust belts and contorted anticline belts formed in multi-cyclic tectonic movements; 2) Important pathways for long distance lateral and vertical migration are provided respectively by unconformities and faults; 3) The pool-forming characteristics of the Permian petroleum system are controlled by paleo-structure; 4) The pool-forming characteristics of Jurassic and Tertiary petroleum system are controlled by recent structures.

  20. Stochastic basins of attraction for metastable states

    Science.gov (United States)

    Serdukova, Larissa; Zheng, Yayun; Duan, Jinqiao; Kurths, Jürgen

    2016-07-01

    Basin of attraction of a stable equilibrium point is an effective concept for stability analysis in deterministic systems; however, it does not contain information on the external perturbations that may affect it. Here we introduce the concept of stochastic basin of attraction (SBA) by incorporating a suitable probabilistic notion of basin. We define criteria for the size of the SBA based on the escape probability, which is one of the deterministic quantities that carry dynamical information and can be used to quantify dynamical behavior of the corresponding stochastic basin of attraction. SBA is an efficient tool to describe the metastable phenomena complementing the known exit time, escape probability, or relaxation time. Moreover, the geometric structure of SBA gives additional insight into the system's dynamical behavior, which is important for theoretical and practical reasons. This concept can be used not only in models with small noise intensity but also with noise whose amplitude is proportional or in general is a function of an order parameter. As an application of our main results, we analyze a three potential well system perturbed by two types of noise: Brownian motion and non-Gaussian α-stable Lévy motion. Our main conclusions are that the thermal fluctuations stabilize the metastable system with an asymmetric three-well potential but have the opposite effect for a symmetric one. For Lévy noise with larger jumps and lower jump frequencies ( α = 0.5 ) metastability is enhanced for both symmetric and asymmetric potentials.

  1. Deforestation Trends in the Congo Basin : Transport

    OpenAIRE

    Megevand, Carole; Dulal, Hari; Braune, Loic; Wekhamp, Johanna

    2013-01-01

    The Congo Basin is among the most poorly served areas in terms of transport infrastructure in the world, and it faces a challenging environment with dense tropical forests crisscrossed by numerous rivers that require construction of numerous bridges. Given such complexities, constructing transport infrastructure as well as properly maintaining it is certainly a key challenge for the Congo ...

  2. Hazards within the Bear Lake basin, Utah

    OpenAIRE

    Palacios, Patsy; Luecke, Chris; Robinson, Justin

    2007-01-01

    The Bear Lake basin developed from fault subsidence that continues today, slowly deepening the lake along the eastern side. The Bear Lake graben is about 5 miles long and 4.3-8.6 miles wide. It extends across the Utah-Idaho border and involves faults on both eastern and western sides of Bear Lake....

  3. 105-KE Basin Pilot Run design plan

    International Nuclear Information System (INIS)

    This document identifies all design deliverables and procedures applicable to the 105-KE Basin Pilot Run. It also establishes a general design strategy, defines interface control requirements, and covers planning for mechanical, electrical, instrument/control system, and equipment installation design

  4. Hydrocarbon potential of intracratonic rift basins

    Energy Technology Data Exchange (ETDEWEB)

    Baker, D.G.; Derksen, S.J.

    1984-09-01

    Significant world oil reserves have been added in recent years from rift system. Examples of petroliferous rift basins may be found on nearly every major continent. As our understanding of the mechanisms of sedimentation and structure in rift basins grows, more rift systems will be found. With a few notable exceptions, rifts that have been explored in the past are those that formed along continental margins. These contain marine sediments, and the conditions of source rock, sediment type, depositional environment, and structural style are well-known exploration concepts. Intracratonic rift systems containing continental sediments, and also because of the problems perceived to accompany continental sedimentation. A good modern analog is the East African rift system. Several companies have made significant oil discoveries in different components of the Central African rift system. Average daily production for 1982 from the basins associated with the Benue trough was 107.928 BOPD. In the Abu Gabra rift component, where Marathon is currently exploring, Chevron has drilled approximately 60 wells. Nineteen of these were discoveries and tested an average rate per well of 3,500 BOPD. The Abu Gabra rift may contain up to 10 billion bbl of oil. Research indicates that this type of rift system is present in other areas of the world. Ongoing worldwide exploration has shown that intracratonic rift basins have the potential to make a significant contribution to world oil reserves.

  5. Observatories for integrated water basin science

    Science.gov (United States)

    James, L. Douglas

    2012-03-01

    For more than 30 years, with the last 20 years at the U.S. National Science Foundation (NSF), I have been immersed in community efforts to focus water resources research on growing societal needs. Past strategies have stumbled, but creative thinking on basin function offers a way out. The following ideas are mine and are not necessarily shared by NSF.

  6. Basins of Attraction for Chimera States

    DEFF Research Database (Denmark)

    Martens, Erik Andreas; Panaggio, Mark; Abrams, Daniel

    2016-01-01

    Chimera states---curious symmetry-broken states in systems of identical coupled oscillators---typically occur only for certain initial conditions. Here we analyze their basins of attraction in a simple system comprised of two populations. Using perturbative analysis and numerical simulation we...

  7. Rifte Guaritas basin compartmentation in Camaqua

    International Nuclear Information System (INIS)

    The study contributes to the knowledge of the tectonic evolution of the Guaritas rift basin in Camaqua. Were used aero magnetic geophysical data for modeling the geometry and the depth of the structures and geological units. The research was supported in processing and interpretation of Aster images (EOS-Terra), which were extracted from geophysical models and digital image

  8. Columbia Basin College Facts & Impacts, 2002.

    Science.gov (United States)

    Columbia Basin Coll., Pasco, WA.

    This fact book for Columbia Basin College (CBC) (Washington) offers statistics on staff and faculty, students, degrees awarded, hot programs, enrollment; student services, financial aid, economic impact, educational partnerships, and governance. CBC serves more than 13,000 students annually and offers associate degrees in arts, science, and…

  9. SEA of river basin management plans

    DEFF Research Database (Denmark)

    Larsen, Sanne Vammen; Kørnøv, Lone

    2009-01-01

    In, 2000 the European Parliament and the European Council passed the Water Framework Directive (WFD) to be implemented in all Member States. The consequence of the directive is that river basin management plans (RBMPs) shall be prepared which are legally subject to a strategic environmental...

  10. KE Basin underwater visual fuel survey

    International Nuclear Information System (INIS)

    Results of an underwater video fuel survey in KE Basin using a high resolution camera system are presented. Quantitative and qualitative information on fuel degradation are given, and estimates of the total fraction of ruptured fuel elements are provided. Representative photographic illustrations showing the range of fuel conditions observed in the survey are included

  11. Basin-wide water accounting based on remote sensing data: an application for the Indus Basin

    OpenAIRE

    P. Karimi; W. G. M. Bastiaanssen; Molden, D.; M. J. M. Cheema

    2013-01-01

    The paper demonstrates the application of a new water accounting plus (WA+) framework to produce information on depletion of water resources, storage change, and land and water productivity in the Indus basin. It shows how satellite-derived estimates of land use, rainfall, evaporation (E), transpiration (T), interception (I) and biomass production can be used in addition to measured basin outflow, for water accounting with WA+. It is demonstrated how the accounting results can be interpreted ...

  12. Social Learning in European River-Basin Management: Barriers and Fostering Mechanisms from 10 River Basins

    OpenAIRE

    Brad Searle; David Tàbara; Yvonne Rees; Claudia Pahl-Wostl; Erik Mostert; Joanne Tippett

    2007-01-01

    We present and analyze 10 case studies of participatory river-basin management that were conducted as part of the European HarmoniCOP project. The main theme was social learning, which emphasizes the importance of collaboration, organization, and learning. The case studies show that social learning in river-basin management is not an unrealistic ideal. Resistance to social learning was encountered, but many instances of social learning were found, and several positive results were identified....

  13. Some relationships between lithology, basin form and hydrology : a case study from the Thames Basin, UK

    OpenAIRE

    Bloomfield, J. P.; S. H. Bricker; Newell, A. J.

    2011-01-01

    The role of lithology in influencing basin form and function is explored empirically by investigating correlations between a range of catchment variables, where the spatial unit of analysis is not surface catchments but lithologically coherent groundwater units. Using the Thames basin, UK, as a case study, nine groundwater units have been identified. Values for 11 hydrological and geomorphological variables, including rainfall, drainage density, Baseflow Index, aquifer porosity, storage coeff...

  14. Messinian paleoenvironmental changes in the easternmost Mediterranean Basin: Adana Basin, southern Turkey

    OpenAIRE

    FARANDA, Costanza; Gliozzi, Elsa; CIPOLLARI, Paola; Grossi, Francesco; Darbaş, Güldemin

    2013-01-01

    We present detailed Messinian paleoenvironmental reconstructions for the Adana Basin based on a multidisciplinary approach that utilizes the fossil content of the Kuzgun and Handere Formations. To reconstruct the paleoenvironmental changes that affected the Adana Basin during the Messinian, we analyzed mollusk, ostracod, planktonic and benthonic foraminifer, and calcareous nannofossil assemblages from 2 stratigraphic sections near Kabasakal village (Adana, southern Turkey). To determine if th...

  15. Innertkirchen compensation basin outlets – Flap gate combined with small stilling basin

    OpenAIRE

    Zeimetz, Fränz; Pfister, Michael; Gehri, Matthias; Kost, Markus

    2013-01-01

    In the context of an update of their hydropower plants, the Hydroelectric Company KWO plans an adaption of their powerhouses Innertkirchen 1 and 2. One aim of the project is, among many others, an optimized restitution regime of the turbined water to the Aare River. Therefore, a compensation basin is planned to reduce the currently pronounced hydro-peaking. The basin is situated downstream of the Hasliaare and the Gadmerwasser confluence, next to the outlets of the two powerhouses. The spatia...

  16. K Basin sludge dissolution engineering study

    Energy Technology Data Exchange (ETDEWEB)

    Westra, A.G.

    1998-08-28

    The purpose of this engineering study is to investigate the available technology related to dissolution of the K Basin sludge in nitric acid. The conclusion of this study along with laboratory and hot cell tests with actual sludge samples will provide the basis for beginning conceptual design of the sludge dissolver. The K Basin sludge contains uranium oxides, fragments of metallic U, and some U hydride as well as ferric oxyhydroxide, aluminum oxides and hydroxides, windblown sand that infiltrated the basin enclosure, ion exchange resin, and miscellaneous materials. The decision has been made to dispose of this sludge separate from the fuel elements stored in the basins. The sludge will be conditioned so that it meets Tank Waste Remediation System waste acceptance criteria and can be sent to one of the underground storage tanks. Sludge conditioning will be done by dissolving the fuel constituents in nitric acid, separating the insoluble material, adding neutron absorbers for criticality safety, and then reacting the solution with caustic to co-precipitate the uranium and plutonium. There will be five distinct feed streams to the sludge conditioning process two from the K East (KE) Basin and three from the K West (KW) Basin. The composition of the floor and pit sludges which contain more iron oxides and sand than uranium is much different than the canister sludges which are composed of mostly uranium oxides. The sludge conditioning equipment will be designed to process all of the sludge streams, but some of the operating parameters will be adjusted as necessary to handle the different sludge stream compositions. The volume of chemical additions and the amount of undissolved solids will be much different for floor and pit sludge than for canister sludge. Dissolution of uranium metal and uranium dioxide has been studied quite thoroughly and much information is available. Both uranium metal and uranium dioxide have been dissolved on a large scale in nuclear fuel

  17. Tritium hydrology of the Mississippi River basin

    Science.gov (United States)

    Michel, R.L.

    2004-01-01

    In the early 1960s, the US Geological Survey began routinely analysing river water samples for tritium concentrations at locations within the Mississippi River basin. The sites included the main stem of the Mississippi River (at Luling Ferry, Louisiana), and three of its major tributaries, the Ohio River (at Markland Dam, Kentucky), the upper Missouri River (at Nebraska City, Nebraska) and the Arkansas River (near Van Buren, Arkansas). The measurements cover the period during the peak of the bomb-produced tritium transient when tritium concentrations in precipitation rose above natural levels by two to three orders of magnitude. Using measurements of tritium concentrations in precipitation, a tritium input function was established for the river basins above the Ohio River, Missouri River and Arkansas River sampling locations. Owing to the extent of the basin above the Luling Ferry site, no input function was developed for that location. The input functions for the Ohio and Missouri Rivers were then used in a two-component mixing model to estimate residence times of water within these two basins. (The Arkansas River was not modelled because of extremely large yearly variations in flow during the peak of the tritium transient.) The two components used were: (i) recent precipitation (prompt outflow) and (ii) waters derived from the long-term groundwater reservoir of the basin. The tritium concentration of the second component is a function of the atmospheric input and the residence times of the groundwaters within the basin. Using yearly time periods, the parameters of the model were varied until a best fit was obtained between modelled and measured tritium data. The results from the model indicate that about 40% of the flow in the Ohio River was from prompt outflow, as compared with 10% for the Missouri River. Mean residence times of 10 years were calculated for the groundwater component of the Ohio River versus 4 years for the Missouri River. The mass flux of

  18. Modeling Nitrogen Losses under Rapid Infiltration Basins

    Science.gov (United States)

    Akhavan, M.; Imhoff, P. T.; Andres, A. S.; Finsterle, S.

    2011-12-01

    Rapid Infiltration Basin System (RIBS) is one of the major land treatment techniques used for wastewater treatment and reuse of recovered treated wastewater. In this system, wastewater that is treated using primary, secondary, or advanced treatment techniques is applied at high rates to shallow basins constructed in permeable deposits of soil or sand, with further treatment occurring in soil and the vadose zone before the water recharges groundwater. Because the influent wastewater is usually enriched in nitrogen (N) compounds, there is particular concern that RIBS may contaminant groundwater or nearby surface waters if not designed and operated properly. In most of the new sequenced batch reactor (SBR) wastewater treatment plants, N is found in the form of nitrate in the discharged wastewater, so denitrification (DNF) is the main reaction in N removal. The absence of molecular oxygen is one of the required conditions for DNF. During RIBS operation, application of wastewater is cyclic and typically consists of a flooding period followed by days or weeks of drying. Key operational parameters include the ratio of wetting to drying time and the hydraulic loading rate, which affect water saturation and air content in the vadose zone and as a result have an impact on DNF. Wastewater is typically distributed at a limited number of discharge points in RIBS and basins are not usually completely flooded which result in non-homogeneous distribution of wastewater and unusual surface water flow patterns. For this reason, we couple overland flow within RIBS with subsurface flow to investigate the influence of non-uniform application of wastewater on DNF. No modeling effort has been done for understanding this aspect of RIBS performance previously. TOUGH2/ iTOUGH2, a general-purpose numerical simulation program for multi-phase fluid flow in porous media, is used for modeling fluid movement. Water saturation is used as a surrogate parameter to evaluate oxygen limitations in the

  19. Messinian Salinity Crisis and basin fluid flow

    Science.gov (United States)

    Bertoni, Claudia; Cartwight, Joe

    2014-05-01

    Syn- and post-depositional movement of fluids through sediments is one of the least understood aspects in the evolution of a basin. The conventional hydrostratigraphic view on marine sedimentary basins assumes that compactional and meteoric groundwater fluid circulation drives fluid movement and defines its timing. However, in the past few years, several examples of instantaneous and catastrophic release of fluids have been observed even through low-permeability sediments. A particularly complex case-study involves the presence of giant salt bodies in the depocentres of marine basins. Evaporites dramatically change the hydrostratigraphy and fluid-dynamics of the basin, and influence the P/T regimes, e.g. through changes in the geothermal gradient and in the compaction of underlying sediments. Our paper reviews the impact of the Messinian Salinity Crisis (MSC) and evaporites on fluid flow in the Mediterranean sub-basins. The analysis of geological and geophysical sub-surface data provides examples from this basin, and the comparison with analogues in other well-known evaporitic provinces. During the MSC, massive sea-level changes occurred in a relatively limited time interval, and affected the balance of fluid dynamics, e.g. with sudden release or unusual trapping of fluids. Fluid expulsion events are here analysed and classified in relation to the long and short-term effects of the MSC. Our main aim is to build a framework for the correct identification of the fluid flow-related events, and their genetic mechanisms. On basin margins, where evaporites are thin or absent, the sea-level changes associated with the MSC force a rapid basinward shift of the mixing zone of meteoric/gravity flow and saline/compactional flow, 100s-km away from its pre-MSC position. This phenomenon changes the geometry of converging flows, creates hydraulic traps for fluids, and triggers specific diagenetic reactions in pre-MSC deep marine sediments. In basin-centre settings, unloading and

  20. Evolution of Mesozoic Volcanic Basins and Red Basins in the Gan-Hang Tectonic-Volcanic Metallogenic Belt

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    This paper mainly proposes six major regional geological events in the active continental-margin mantle uplift zone and discusses the oscillation nature of the evolution of Mesozoic volcanic basins and red basins, origin of erosion in the late stage of red basins and mechanism of volcanism.