WorldWideScience

Sample records for based enrichment method

  1. Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere.

    Science.gov (United States)

    Ottesen, Andrea R; Gonzalez, Antonio; Bell, Rebecca; Arce, Caroline; Rideout, Steven; Allard, Marc; Evans, Peter; Strain, Errol; Musser, Steven; Knight, Rob; Brown, Eric; Pettengill, James B

    2013-01-01

    The ability to detect a specific organism from a complex environment is vitally important to many fields of public health, including food safety. For example, tomatoes have been implicated numerous times as vehicles of foodborne outbreaks due to strains of Salmonella but few studies have ever recovered Salmonella from a tomato phyllosphere environment. Precision of culturing techniques that target agents associated with outbreaks depend on numerous factors. One important factor to better understand is which species co-enrich during enrichment procedures and how microbial dynamics may impede or enhance detection of target pathogens. We used a shotgun sequence approach to describe taxa associated with samples pre-enrichment and throughout the enrichment steps of the Bacteriological Analytical Manual's (BAM) protocol for detection of Salmonella from environmental tomato samples. Recent work has shown that during efforts to enrich Salmonella (Proteobacteria) from tomato field samples, Firmicute genera are also co-enriched and at least one co-enriching Firmicute genus (Paenibacillus sp.) can inhibit and even kills strains of Salmonella. Here we provide a baseline description of microflora that co-culture during detection efforts and the utility of a bioinformatic approach to detect specific taxa from metagenomic sequence data. We observed that uncultured samples clustered together with distinct taxonomic profiles relative to the three cultured treatments (Universal Pre-enrichment broth (UPB), Tetrathionate (TT), and Rappaport-Vassiliadis (RV)). There was little consistency among samples exposed to the same culturing medias, suggesting significant microbial differences in starting matrices or stochasticity associated with enrichment processes. Interestingly, Paenibacillus sp. (Salmonella inhibitor) was significantly enriched from uncultured to cultured (UPB) samples. Also of interest was the sequence based identification of a number of sequences as Salmonella despite

  2. Pros and cons of methylation-based enrichment methods for ancient DNA

    DEFF Research Database (Denmark)

    Seguin-Orlando, Andaine; Gamba, Cristina; Der Sarkissian, Clio;

    2015-01-01

    The recent discovery that DNA methylation survives in fossil material provides an opportunity for novel molecular approaches in palaeogenomics. Here, we apply to ancient DNA extracts the probe-independent Methylated Binding Domains (MBD)-based enrichment method, which targets DNA molecules...... containing methylated CpGs. Using remains of a Palaeo-Eskimo Saqqaq individual, woolly mammoths, polar bears and two equine species, we confirm that DNA methylation survives in a variety of tissues, environmental contexts and over a large temporal range (4,000 to over 45,000 years before present). MBD...... enrichment, however, appears principally biased towards the recovery of CpG-rich and long DNA templates and is limited by the fast post-mortem cytosine deamination rates of methylated epialleles. This method, thus, appears only appropriate for the analysis of ancient methylomes from very well preserved...

  3. Validation of Flow Cytometry and Magnetic Bead-Based Methods to Enrich CNS Single Cell Suspensions for Quiescent Microglia.

    Science.gov (United States)

    Volden, T A; Reyelts, C D; Hoke, T A; Arikkath, J; Bonasera, S J

    2015-12-01

    Microglia are resident mononuclear phagocytes within the CNS parenchyma that intimately interact with neurons and astrocytes to remodel synapses and extracellular matrix. We briefly review studies elucidating the molecular pathways that underlie microglial surveillance, activation, chemotaxis, and phagocytosis; we additionally place these studies in a clinical context. We describe and validate an inexpensive and simple approach to obtain enriched single cell suspensions of quiescent parenchymal and perivascular microglia from the mouse cerebellum and hypothalamus. Following preparation of regional CNS single cell suspensions, we remove myelin debris, and then perform two serial enrichment steps for cells expressing surface CD11b. Myelin depletion and CD11b enrichment are both accomplished using antigen-specific magnetic beads in an automated cell separation system. Flow cytometry of the resultant suspensions shows a significant enrichment for CD11b(+)/CD45(+) cells (perivascular microglia) and CD11b(+)/CD45(-) cells (parenchymal microglia) compared to starting suspensions. Of note, cells from these enriched suspensions minimally express Aif1 (aka Iba1), suggesting that the enrichment process does not evoke significant microglial activation. However, these cells readily respond to a functional challenge (LPS) with significant changes in the expression of molecules specifically associated with microglia. We conclude that methods employing a combination of magnetic-bead based sorting and flow cytometry produce suspensions highly enriched for microglia that are appropriate for a variety of molecular and cellular assays.

  4. A Laser-Based Method for On-Site Analysis of UF6 at Enrichment Plants

    Energy Technology Data Exchange (ETDEWEB)

    Anheier, Norman C.; Cannon, Bret D.; Martinez, Alonzo; Barrett, Christopher A.; Taubman, Matthew S.; Anderson, Kevin K.; Smith, Leon E.

    2014-11-23

    The International Atomic Energy Agency’s (IAEA’s) long-term research and development plan calls for more cost-effective and efficient safeguard methods to detect and deter misuse of gaseous centrifuge enrichment plants (GCEPs). The IAEA’s current safeguards approaches at GCEPs are based on a combination of routine and random inspections that include environmental sampling and destructive assay (DA) sample collection from UF6 in-process material and selected cylinders. Samples are then shipped offsite for subsequent laboratory analysis. In this paper, a new DA sample collection and onsite analysis approach that could help to meet challenges in transportation and chain of custody for UF6 DA samples is introduced. This approach uses a handheld sampler concept and a Laser Ablation, Laser Absorbance Spectrometry (LAARS) analysis instrument, both currently under development at the Pacific Northwest National Laboratory. A LAARS analysis instrument could be temporarily or permanently deployed in the IAEA control room of the facility, in the IAEA data acquisition cabinet, for example. The handheld PNNL DA sampler design collects and stabilizes a much smaller DA sample mass compared to current sampling methods. The significantly lower uranium mass reduces the sample radioactivity and the stabilization approach diminishes the risk of uranium and hydrogen fluoride release. These attributes enable safe sample handling needed during onsite LAARS assay and may help ease shipping challenges for samples to be processed at the IAEA’s offsite laboratory. The LAARS and DA sampler implementation concepts will be described and preliminary technical viability results presented.

  5. Recent developments of nanoparticle-based enrichment methods for mass spectrometric analysis in proteomics

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    In proteome research, rapid and effective separation strategies are essential for successful protein identification due to the broad dynamic range of proteins in biological samples. Some important proteins are often expressed in ultra low abundance, thus making the pre-concentration procedure before mass spectrometric analysis prerequisite. The main purpose of enrichment is to isolate target molecules from complex mixtures to reduce sample complexity and facilitate the subsequent analyzing steps. The introduction of nanoparticles into this field has accelerated the development of enrichment methods. In this review, we mainly focus on recent developments of using different nanomaterials for pre-concentration of low-abundance peptides/ proteins, including those containing post-translational modifications, such as phosphorylation and glycosylation, prior to mass spectrometric analysis.

  6. Phosphopeptide enrichment: Development of magnetic solid phase extraction method based on polydopamine coating and Ti(4+)-IMAC.

    Science.gov (United States)

    Piovesana, Susy; Capriotti, Anna Laura; Cavaliere, Chiara; Ferraris, Francesca; Samperi, Roberto; Ventura, Salvatore; Laganà, Aldo

    2016-02-25

    Protein post translational modifications currently represent one of the main challenges with proteomic analysis, due to the important biological role they play within cells. Protein phosphorylation is one of the most important, with several approaches developed for phosphopeptides enrichment and analysis, essential for comprehensive phosphoproteomic analysis. However, the development of new materials for phosphopeptides enrichment may overcome previous drawbacks and improve enrichment of such peptides. In this regard, new magnetic stationary phases based on polydopamine coating and Ti(4+) immobilization exploit the potential of IMAC enrichment and couple it with the versatility of magnetic solid phase extraction. In this work the use of such stationary phase was extended from the MALDI proof of concept stage with the development of an optimized method for phosphopeptides enrichment compatible with typical shotgun proteomics experimental workflows. Different loading and elution buffers were tested to improve phosphopeptides recovery and enrichment selectivity. Finally, the analysis of isolated peptides pointed out that polydopamine alone is an ideal support matrix for polar post translational modifications because it enables to reduce unspecific binding and preferentially binds hydrophilic peptides. PMID:26851086

  7. A combined enrichment/polymerase chain reaction based method for the routine screening of Streptococcus agalactiae in pregnant women

    Directory of Open Access Journals (Sweden)

    F.M. Munari

    2012-03-01

    Full Text Available Group B Streptococcus (GBS is the most common cause of life-threatening infection in neonates. Guidelines from CDC recommend universal screening of pregnant women for rectovaginal GBS colonization. The objective of this study was to compare the performance of a combined enrichment/PCR based method targeting the atr gene in relation to culture using enrichment with selective broth medium (standard method to identify the presence of GBS in pregnant women. Rectovaginal GBS samples from women at ≥36 weeks of pregnancy were obtained with a swab and analyzed by the two methods. A total of 89 samples were evaluated. The prevalence of positive results for GBS detection was considerable higher when assessed by the combined enrichment/PCR method than with the standard method (35.9% versus 22.5%, respectively. The results demonstrated that the use of selective enrichment broth followed by PCR targeting the atr gene is a highly sensitive, specific and accurate test for GBS screening in pregnant women, allowing the detection of the bacteria even in lightly colonized patients. This PCR methodology may provide a useful diagnostic tool for GBS detection and contributes for a more accurate and effective intrapartum antibiotic and lower newborn mortality and morbidity.

  8. Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery.

    Directory of Open Access Journals (Sweden)

    Anna Kiialainen

    Full Text Available Targeted sequencing is a cost-efficient way to obtain answers to biological questions in many projects, but the choice of the enrichment method to use can be difficult. In this study we compared two hybridization methods for target enrichment for massively parallel sequencing and single nucleotide polymorphism (SNP discovery, namely Nimblegen sequence capture arrays and the SureSelect liquid-based hybrid capture system. We prepared sequencing libraries from three HapMap samples using both methods, sequenced the libraries on the Illumina Genome Analyzer, mapped the sequencing reads back to the genome, and called variants in the sequences. 74-75% of the sequence reads originated from the targeted region in the SureSelect libraries and 41-67% in the Nimblegen libraries. We could sequence up to 99.9% and 99.5% of the regions targeted by capture probes from the SureSelect libraries and from the Nimblegen libraries, respectively. The Nimblegen probes covered 0.6 Mb more of the original 3.1 Mb target region than the SureSelect probes. In each sample, we called more SNPs and detected more novel SNPs from the libraries that were prepared using the Nimblegen method. Thus the Nimblegen method gave better results when judged by the number of SNPs called, but this came at the cost of more over-sampling.

  9. Assessment of phosphopeptide enrichment/precipitation method for LC-MS/MS based phosphoproteomic analysis of plant tissue

    DEFF Research Database (Denmark)

    Ye, Juanying; Rudashevskaya, Elena; Hansen, Thomas Aarup;

    (MSA) method was used for phosphopeptide fragmentation. The resulting fragment ion spectra were processed with Proteome Discoverer software (Thermo Electron, Bremen, Germany). Results We first investigated the global phosphorylation profile of plant plasma membrane proteins by enriching...... the phosphopeptides with IMAC, TiO2 enrichment methods prior to LTQ-Orbitrap MS analysis. 100 ug plant plasma membrane protein was used for each enrichment experiment. The data was searched against NCBI database on MASCOT server, and the results were validated by in home bioinformatic software using the A...

  10. Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA

    DEFF Research Database (Denmark)

    Avila Arcos, Maria del Carmen; Cappellini, Enrico; Romero-Navarro, J Alberto;

    2011-01-01

    The development of second-generation sequencing technologies has greatly benefitted the field of ancient DNA (aDNA). Its application can be further exploited by the use of targeted capture-enrichment methods to overcome restrictions posed by low endogenous and contaminating DNA in ancient samples...

  11. Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA

    OpenAIRE

    Ávila-Arcos, María C.; Enrico Cappellini; J. Alberto Romero-Navarro; Nathan Wales; J. Víctor Moreno-Mayar; Morten Rasmussen; Fordyce, Sarah L.; Rafael Montiel; Jean-Philippe Vielle-Calzada; Eske Willerslev; Gilbert, M. Thomas P.

    2011-01-01

    The development of second-generation sequencing technologies has greatly benefitted the field of ancient DNA (aDNA). Its application can be further exploited by the use of targeted capture-enrichment methods to overcome restrictions posed by low endogenous and contaminating DNA in ancient samples. We tested the performance of Agilent's SureSelect and Mycroarray's MySelect in-solution capture systems on Illumina sequencing libraries built from ancient maize to identify key factors influencing ...

  12. Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA

    Science.gov (United States)

    Ávila-Arcos, María C.; Cappellini, Enrico; Romero-Navarro, J. Alberto; Wales, Nathan; Moreno-Mayar, J. Víctor; Rasmussen, Morten; Fordyce, Sarah L.; Montiel, Rafael; Vielle-Calzada, Jean-Philippe; Willerslev, Eske; Gilbert, M. Thomas P.

    2011-01-01

    The development of second-generation sequencing technologies has greatly benefitted the field of ancient DNA (aDNA). Its application can be further exploited by the use of targeted capture-enrichment methods to overcome restrictions posed by low endogenous and contaminating DNA in ancient samples. We tested the performance of Agilent's SureSelect and Mycroarray's MySelect in-solution capture systems on Illumina sequencing libraries built from ancient maize to identify key factors influencing aDNA capture experiments. High levels of clonality as well as the presence of multiple-copy sequences in the capture targets led to biases in the data regardless of the capture method. Neither method consistently outperformed the other in terms of average target enrichment, and no obvious difference was observed either when two tiling designs were compared. In addition to demonstrating the plausibility of capturing aDNA from ancient plant material, our results also enable us to provide useful recommendations for those planning targeted-sequencing on aDNA. PMID:22355593

  13. GOMA: functional enrichment analysis tool based on GO modules

    Institute of Scientific and Technical Information of China (English)

    Qiang Huang; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang

    2013-01-01

    Analyzing the function of gene sets is a critical step in interpreting the results of high-throughput experiments in systems biology.A variety of enrichment analysis tools have been developed in recent years,but most output a long list of significantly enriched terms that are often redundant,making it difficult to extract the most meaningful functions.In this paper,we present GOMA,a novel enrichment analysis method based on the new concept of enriched functional Gene Ontology (GO) modules.With this method,we systematically revealed functional GO modules,i.e.,groups of functionally similar GO terms,via an optimization model and then ranked them by enrichment scores.Our new method simplifies enrichment analysis results by reducing redundancy,thereby preventing inconsistent enrichment results among functionally similar terms and providing more biologically meaningful results.

  14. Effect of cooking method on the fatty acid content of reduced-fat and PUFA-enriched pork patties formulated with a konjac-based oil bulking system.

    Science.gov (United States)

    Salcedo-Sandoval, Lorena; Cofrades, Susana; Ruiz-Capillas, Claudia; Jiménez-Colmenero, Francisco

    2014-12-01

    The effect of cooking methods (electric grilling and pan-frying in olive oil) on the composition of reduced-fat and reduced-fat/PUFA enriched pork patties was studied. Fat reduction was performed by replacing pork backfat (38% and 100%) with konjac gel and PUFA-enrichment by replacing pork backfat (49%) with a konjac-based oil bulking system stabilizing a healthier oil combination (olive, linseed and fish oils). Cooking losses (13%-27%) were affected (pfat/improved sample containing the oil bulking system ranged between 1.4 and 1.6g/100g (0.47-0.51 from n-3 PUFAs), with EPA+DHA concentrations of around 75mg/100g. Konjac materials were successfully used to produce pork patties with a better lipid composition.

  15. Clustering based gene expression feature selection method: A computational approach to enrich the classifier efficiency of differentially expressed genes

    KAUST Repository

    Abusamra, Heba

    2016-07-20

    The native nature of high dimension low sample size of gene expression data make the classification task more challenging. Therefore, feature (gene) selection become an apparent need. Selecting a meaningful and relevant genes for classifier not only decrease the computational time and cost, but also improve the classification performance. Among different approaches of feature selection methods, however most of them suffer from several problems such as lack of robustness, validation issues etc. Here, we present a new feature selection technique that takes advantage of clustering both samples and genes. Materials and methods We used leukemia gene expression dataset [1]. The effectiveness of the selected features were evaluated by four different classification methods; support vector machines, k-nearest neighbor, random forest, and linear discriminate analysis. The method evaluate the importance and relevance of each gene cluster by summing the expression level for each gene belongs to this cluster. The gene cluster consider important, if it satisfies conditions depend on thresholds and percentage otherwise eliminated. Results Initial analysis identified 7120 differentially expressed genes of leukemia (Fig. 15a), after applying our feature selection methodology we end up with specific 1117 genes discriminating two classes of leukemia (Fig. 15b). Further applying the same method with more stringent higher positive and lower negative threshold condition, number reduced to 58 genes have be tested to evaluate the effectiveness of the method (Fig. 15c). The results of the four classification methods are summarized in Table 11. Conclusions The feature selection method gave good results with minimum classification error. Our heat-map result shows distinct pattern of refines genes discriminating between two classes of leukemia.

  16. Recommendations based on semantically enriched museum collections

    NARCIS (Netherlands)

    Wang, Y.; Stash, N.; Aroyo, L.; Gorgels, P.; Rutledge, L.; Schreiber, G.

    2008-01-01

    This article presents the CHIP demonstrator1 for providing personalized access to digital museum collections. It consists of three main components: Art Recommender, Tour Wizard, and Mobile Tour Guide. Based on the semantically enriched Rijksmuseum Amsterdam2 collection, we show how Semantic Web tech

  17. Method and apparatus for enrichment or upgrading heavy water

    International Nuclear Information System (INIS)

    A method and apparatus for upgrading and final enrichment of heavy water are described, comprising means for contacting partially enriched heavy water feed in a catalyst column with hydrogen gas (essentially D2) originating in an electrolysis cell so as to enrich the feed water with deuterium extracted from the electrolytic hydrogen gas and means for passing the deuterium enriched water to the electrolysis cell. (author)

  18. A novel HMM-based method for detecting enriched transcription factor binding sites reveals RUNX3 as a potential target in pancreatic cancer biology.

    Directory of Open Access Journals (Sweden)

    Liron Levkovitz

    Full Text Available BACKGROUND: Pancreatic adenocarcinoma (PAC is one of the most intractable malignancies. In order to search for potential new therapeutic targets, we relied on computational methods aimed at identifying transcription factor binding sites (TFBSs over-represented in the promoter regions of genes differentially expressed in PAC. Though many computational methods have been implemented to accomplish this, none has gained overall acceptance or produced proven novel targets in PAC. To this end we have developed DEMON, a novel method for motif detection. METHODOLOGY: DEMON relies on a hidden Markov model to score the appearance of sequence motifs, taking into account all potential sites in a promoter of potentially varying binding affinities. We demonstrate DEMON's accuracy on simulated and real data sets. Applying DEMON to PAC-related data sets identifies the RUNX family as highly enriched in PAC-related genes. Using a novel experimental paradigm to distinguish between normal and PAC cells, we find that RUNX3 mRNA (but not RUNX1 or RUNX2 mRNAs exhibits time-dependent increases in normal but not in PAC cells. These increases are accompanied by changes in mRNA levels of putative RUNX gene targets. CONCLUSIONS: The integrated application of DEMON and a novel differentiation system led to the identification of a single family member, RUNX3, which together with four of its putative targets showed a robust response to a differentiation stimulus in healthy cells, whereas this regulatory mechanism was absent in PAC cells, emphasizing RUNX3 as a promising target for further studies.

  19. An improved cell recovery method for iron oxidizing bacterial (IOB) enrichments

    DEFF Research Database (Denmark)

    Yu, Ran; Graf, Joerg; Smets, Barth F.

    2008-01-01

    Two cell recovery methods for IOB enrichments were evaluated for DNA extraction and further PCR-based 16S rRNA gene clone library creation. One was a published method consisting of heating plus oxalic acid treatment and the other one was a new method based on enzymatic agarose digestion (using β......-agarase I). The results indicated that the enzymatic method was much gentler on IOB cells and yielded an approximately 5000-fold higher DNA mass than the published method. The 16S rRNA gene clone library developed from the β-agarase I treated IOB enrichments indicated a high IOB community diversity...

  20. 77 FR 13367 - General Electric-Hitachi Global Laser Enrichment, LLC, Proposed Laser-Based Uranium Enrichment...

    Science.gov (United States)

    2012-03-06

    ... Preparation, 75 FR 1819 (January 13, 2010). Documents related to this notice are available on the NRC's GE... COMMISSION General Electric-Hitachi Global Laser Enrichment, LLC, Proposed Laser-Based Uranium Enrichment...- Hitachi Global Laser Enrichment, LLC (GLE) Uranium Enrichment Facility. On June 26, 2009, GLE submitted...

  1. An investigation of methods for enriching trophoblast from maternal blood.

    Science.gov (United States)

    Johansen, M; Knight, M; Maher, E J; Smith, K; Sargent, I L

    1995-10-01

    Trophoblast deportation is known to occur in normal human pregnancy, but it is not yet clear whether these cells routinely enter the maternal peripheral circulation and are available as a source of fetal DNA for non-invasive prenatal diagnosis of genetic disorders. To resolve this issue requires an efficient method of enriching trophoblast from maternal blood combined with a means to confirm its identity. Five different techniques were tested on ten retroplacental blood samples to determine the most sensitive and operator-efficient method. Lysis of red cells alone gave the best recovery of trophoblast but had to be discounted, together with Ficoll density gradient centrifugation, due to the very low purity and the excessive time required. Fluorescence-activated cell sorting (FACS) of pre-enriched trophoblast resulted in the lowest recovery rate (8 per cent) despite a 3250-fold enrichment and a very high purity. Immunomagnetic beads (Dynabeads) coated with anti-CD16 antibody proved to be the best method for the subsequent immunocytochemical characterization of deported trophoblast. However, IO beads coated with anti-CD45 antibody may be more useful for isolating trophoblast for prenatal diagnosis due to the high purity, enrichment (32-fold), and recovery rate (78 per cent) obtained with this method. PMID:8587860

  2. Simulating distinguish enriched uranium from depleted uranium by activation method

    International Nuclear Information System (INIS)

    Detecting uranium material is an important work in arms control Active detection is an efficient method for uranium material. The paper focuses on the feasibility that can distinguish the enriched uranium and the depleted uranium by MCNP program. It can distinguish the enriched uranium and the depleted uranium by the curve of relationship between fission rate of uranium material and thickness of moderator.Advantages of 252Cf and 14 MeV neutron sources are discussed in detecting uranium material through calculation. The results show that 252Cf neutron source is better than 14 MeV one. Delayed neutrons are more easily detected than delayed gamma ray at measurement aspect. (authors)

  3. Distribution of Listeria spp. in confectioners' pastries from western France: comparison of enrichment methods.

    Science.gov (United States)

    Ferron, P; Michard, J

    1993-06-01

    Three hundred samples of pastry from 100 different suppliers in western France, including butter-cream, whipped dairy cream and custard filled cakes from each supplier, were collected and tested for the occurrence of Listeria spp. in 25 g samples. Listeria spp. were detected in 21.7% of he samples: Listeria monocytogenes in 13.7%, Listeria innocua in 10% and Listeria seeligeri in 2.3%. Thirteen samples were contaminated with two species simultaneously. The frequency of contaminated samples was not related to the composition of the pastry filling used, but it seemed to increase with the number of aerobic contaminant microorganisms in the dairy cream-based samples. The contamination rate was dependent on the place of manufacture. The numbers of Listeria spp. and Listeria monocytogenes were estimated on positive samples at the 25 g level as follows: < 0.3/g, Listeria spp. in 47 samples, L monocytogenes in 27; 0.3-30/g, Listeria spp. in 13, L. monocytogenes in nine; 30-300/g, L. monocytogenes in one; 300-3000/g; L. monocytogenes in three; 700,000/g, L. monocytogenes in one. Various detection methods were tested, including two enrichments broths tested in parallel: a modified LEB broth using 10 mg/l acriflavine-HCl and the UVM 1 broth, with incubation at 30 degrees C and streaking onto PALCAM agar. The enrichment procedures were: (a) primary enrichment of 25 g sample and plating after 48 h and 7 days; (b) secondary enrichment by subculturing the primary enrichment broths incubated for 24 h and 6 days, into fresh enrichment broth, then plating after 24 h incubation; (c) pre-enrichment of 25 g sample for 24 h in the basal enrichment broths without inhibitors, followed by subculturing in complete broths which were plated after 24 h and 6 days incubation. In all cases, UVM performed better than the LEB broth. It was unnecessary to extend the primary enrichment period beyond 48 h. Secondary enrichments inoculated from 24-h incubated primary enrichments gave a slightly better

  4. Method for production of an isotopically enriched compound

    Science.gov (United States)

    Watrous, Matthew G.

    2012-12-11

    A method is presented for producing and isolating an isotopically enriched compound of a desired isotope from a parent radionuclide. The method includes forming, or placing, a precipitate containing a parent radionuclide of the desired daughter isotope in a first reaction zone and allowing sufficient time for the parent to decay into the desired gaseous daughter radioisotope. The method further contemplates collecting the desired daughter isotope as a solid in a second reaction zone through the application of temperatures below the freezing point of the desired isotope to a second reaction zone that is connected to the first reaction zone. Specifically, a method is presented for producing isotopically enriched compounds of xenon, including the radioactive isotope Xe-131m and the stable isotope Xe-131.

  5. Measurement of uranium mass and enrichment by time correlation coincidence method

    International Nuclear Information System (INIS)

    Background: Nuclear materials especially highly enriched uranium materials attract more and more attentions, and increasing methods and technical means are used to detect its information of mass and enrichment. Purpose: In order to solve the key technique problem of measuring the mass and enrichment of highly enriched uranium materials in the heavy shielded containers, a novel trial method was proposed in the paper: Methods: Time correlation coincidence method was implemented by using 14-MeV neutrons and continuous spectrum neutrons obtained by moderating 14-MeV neutrons to interrogate uranium materials inside of lead container with different mass and enrichment. Results: Within the certain range of low enrichment, the relation of different uranium samples mass of same enrichment was linear, and so was the relation of different uranium samples enrichment of same mass. Conclusion: Time correlation coincidence method might be an effective solution to measure the mass and enrichment of uranium materials in the heavy shielded container in the future. (authors)

  6. Solution-based targeted genomic enrichment for precious DNA samples

    Directory of Open Access Journals (Sweden)

    Shearer Aiden

    2012-05-01

    Full Text Available Abstract Background Solution-based targeted genomic enrichment (TGE protocols permit selective sequencing of genomic regions of interest on a massively parallel scale. These protocols could be improved by: 1 modifying or eliminating time consuming steps; 2 increasing yield to reduce input DNA and excessive PCR cycling; and 3 enhancing reproducible. Results We developed a solution-based TGE method for downstream Illumina sequencing in a non-automated workflow, adding standard Illumina barcode indexes during the post-hybridization amplification to allow for sample pooling prior to sequencing. The method utilizes Agilent SureSelect baits, primers and hybridization reagents for the capture, off-the-shelf reagents for the library preparation steps, and adaptor oligonucleotides for Illumina paired-end sequencing purchased directly from an oligonucleotide manufacturing company. Conclusions This solution-based TGE method for Illumina sequencing is optimized for small- or medium-sized laboratories and addresses the weaknesses of standard protocols by reducing the amount of input DNA required, increasing capture yield, optimizing efficiency, and improving reproducibility.

  7. Improved Methods for the Enrichment and Analysis of Glycated Peptides

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Qibin; Schepmoes, Athena A; Brock, Jonathan W; Wu, Si; Moore, Ronald J; Purvine, Samuel O; Baynes, John; Smith, Richard D; Metz, Thomas O

    2008-12-15

    Non-enzymatic glycation of tissue proteins has important implications in the development of complications of diabetes mellitus. Herein we report improved methods for the enrichment and analysis of glycated peptides using boronate affinity chromatography and electron transfer dissociation mass spectrometry, respectively. The enrichment of glycated peptides was improved by replacing an off-line desalting step with an on-line wash of column-bound glycated peptides using 50 mM ammonium acetate. The analysis of glycated peptides by MS/MS was improved by considering only higher charged (≥3) precursor-ions during data-dependent acquisition, which increased the number of glycated peptide identifications. Similarly, the use of supplemental collisional activation after electron transfer (ETcaD) resulted in more glycated peptide identifications when the MS survey scan was acquired with enhanced resolution. In general, acquiring ETD-MS/MS data at a normal MS survey scan rate, in conjunction with the rejection of both 1+ and 2+ precursor-ions, increased the number of identified glycated peptides relative to ETcaD or the enhanced MS survey scan rate. Finally, an evaluation of trypsin, Arg-C, and Lys-C showed that tryptic digestion of glycated proteins was comparable to digestion with Lys-C and that both were better than Arg-C in terms of the number glycated peptides identified by LC-MS/MS.

  8. Mercury release from deforested soils triggered by base cation enrichment.

    Science.gov (United States)

    Farella, N; Lucotte, M; Davidson, R; Daigle, S

    2006-09-01

    The Brazilian Amazon has experienced considerable colonization in the last few decades. Family agriculture based on slash-and-burn enables millions of people to live in that region. However, the poor nutrient content of most Amazonian soils requires cation-rich ashes from the burning of the vegetation biomass for cultivation to be successful, which leads to forest ecosystem degradation, soil erosion and mercury contamination. While recent studies have suggested that mercury present in soils was transferred towards rivers upon deforestation, little is known about the dynamics between agricultural land-use and mercury leaching. In this context, the present study proposes an explanation that illustrates how agricultural land-use triggers mercury loss from soils. This explanation lies in the competition between base cations and mercury in soils which are characterized by a low adsorption capacity. Since these soils are naturally very poor in base cations, the burning of the forest biomass suddenly brings high quantities of base cations to soils, destabilizing the previous equilibrium amongst cations. Base cation enrichment triggers mobility in soil cations, rapidly dislocating mercury atoms. This conclusion comes from principal component analyses illustrating that agricultural land-use was associated with base cation enrichment and mercury depletion. The overall conclusions highlight a pernicious cycle: while soil nutrient enrichment actually occurs through biomass burning, although on a temporary basis, there is a loss in Hg content, which is leached to rivers, entering the aquatic chain, and posing a potential health threat to local populations. Data presented here reflects three decades of deforestation activities, but little is known about the long-term impact of such a disequilibrium. These findings may have repercussions on our understanding of the complex dynamics of deforestation and agriculture worldwide. PMID:16781764

  9. Enriching semantic knowledge bases for opinion mining in big data applications.

    Science.gov (United States)

    Weichselbraun, A; Gindl, S; Scharl, A

    2014-10-01

    This paper presents a novel method for contextualizing and enriching large semantic knowledge bases for opinion mining with a focus on Web intelligence platforms and other high-throughput big data applications. The method is not only applicable to traditional sentiment lexicons, but also to more comprehensive, multi-dimensional affective resources such as SenticNet. It comprises the following steps: (i) identify ambiguous sentiment terms, (ii) provide context information extracted from a domain-specific training corpus, and (iii) ground this contextual information to structured background knowledge sources such as ConceptNet and WordNet. A quantitative evaluation shows a significant improvement when using an enriched version of SenticNet for polarity classification. Crowdsourced gold standard data in conjunction with a qualitative evaluation sheds light on the strengths and weaknesses of the concept grounding, and on the quality of the enrichment process.

  10. Enriching semantic knowledge bases for opinion mining in big data applications.

    Science.gov (United States)

    Weichselbraun, A; Gindl, S; Scharl, A

    2014-10-01

    This paper presents a novel method for contextualizing and enriching large semantic knowledge bases for opinion mining with a focus on Web intelligence platforms and other high-throughput big data applications. The method is not only applicable to traditional sentiment lexicons, but also to more comprehensive, multi-dimensional affective resources such as SenticNet. It comprises the following steps: (i) identify ambiguous sentiment terms, (ii) provide context information extracted from a domain-specific training corpus, and (iii) ground this contextual information to structured background knowledge sources such as ConceptNet and WordNet. A quantitative evaluation shows a significant improvement when using an enriched version of SenticNet for polarity classification. Crowdsourced gold standard data in conjunction with a qualitative evaluation sheds light on the strengths and weaknesses of the concept grounding, and on the quality of the enrichment process. PMID:25431524

  11. Prospects of lithium enrichment on 7Li isotope by method of controlled ions electro-migration

    Science.gov (United States)

    Martoyan, G. A.; Kalugin, M. M.; Gabrielyan, A. V.; Martoyan, A. G.

    2016-01-01

    This paper deals with a new electro-membrane method of enrichment of 7Li isotope. The data are presented on the importance and application fields regarding the use of 7Li isotopes. Existing methods and criteria of separation of lithium isotopes are discussed. The principle of new technology, regimes of enrichment experiments, and analysis details of obtained products are briefly described.

  12. A Novel Magnetic Separation Oxygen-enriched Method and the Influence of Temperature and Magnetic Field on Enrichment

    Institute of Scientific and Technical Information of China (English)

    Li WANG; Jun CAI; Ping WU; Lige TONG; Shufeng SUN

    2007-01-01

    A novel oxygen-enriched method is presented. Using two opposite magnetic poles of two magnets with certain distance forms a magnetic space having a field intensity gradient near its borders. When air injected into the magnetic space outflows from the magnetic space via its borders, oxygen molecules in air will experience the interception effect of the gradient magnetic field, but nitrogen molecules will outflow without hindrance. Thereby the continuous oxygen enrichment is realized. The results show that the maximum increment of oxygen concentration reaches 0.49% at 298 K when the maximum product of magnetic flux density and field intensity gradient is 563T2/m. The enrichment level is significantly influenced by the gas temperature and the magnetic field. The maximum increment of oxygen concentration drops to 0.16% when the gas temperature rises to 343 K, and drops to 0.09% when the maximum product of magnetic flux density and gradient is reduced to 101 T2/m from 563T2/m.

  13. 不同精制法松树木醋液中生物活性组分的富集%Enrichment of Bioactive Components in Pine Wood Vinegar Based on Different Refining Methods

    Institute of Scientific and Technical Information of China (English)

    许英梅; 高连连; 朴永哲; 刘巨涛; 张树彪

    2015-01-01

    Enrichment of main bioactive components in three different xiaoxing 'an mountains ’ pine vinegar made by standing only, distillation and membrane filtration was analyzed by GC-MS. Research results showed that among the three kinds of refining methods, the latter two could remove colored harmful macromolecules so that the color became lighter. Distillation pine vinegar was more conducive to enriching organic acid and membrane filtration pine vinegar pre-ferred to enrich phenol, guaiacol and even the total biological active component including acid and phenols.%采用GC-MS分析法研究了3种精制法所得木醋液对小兴安岭松树木醋液中主要生物活性组分羧酸和酚类的富集,包括物理静置法所得原松木醋液、蒸馏法所得松木醋液和膜过滤法所得松木醋液。结果表明,3种精制方法中,蒸馏法和膜过滤法都可以进一步去除原木醋液中的有色有害大分子,使颜色变浅。蒸馏法松木醋液有利于木醋液中乙酸等羧酸的富集;膜过滤法松木醋液有利于对苯酚和愈创木酚等酚类的富集,且对羧酸和酚类总的生物活性成分的富集较有优势。

  14. A Clustering-Based Approach to Enriching Code Foraging Environment.

    Science.gov (United States)

    Niu, Nan; Jin, Xiaoyu; Niu, Zhendong; Cheng, Jing-Ru C; Li, Ling; Kataev, Mikhail Yu

    2016-09-01

    Developers often spend valuable time navigating and seeking relevant code in software maintenance. Currently, there is a lack of theoretical foundations to guide tool design and evaluation to best shape the code base to developers. This paper contributes a unified code navigation theory in light of the optimal food-foraging principles. We further develop a novel framework for automatically assessing the foraging mechanisms in the context of program investigation. We use the framework to examine to what extent the clustering of software entities affects code foraging. Our quantitative analysis of long-lived open-source projects suggests that clustering enriches the software environment and improves foraging efficiency. Our qualitative inquiry reveals concrete insights into real developer's behavior. Our research opens the avenue toward building a new set of ecologically valid code navigation tools. PMID:25910273

  15. Development of a new 48Ca enrichment method and the CANDLES experiment

    Science.gov (United States)

    Kishimoto, Tadafumi

    2015-10-01

    CANDLES is a project to study double beta decay of 48Ca. CANDLES could become the most competitive experiment if we could have an efficient method to enrich 48Ca. We developed a new method for enrichment of large amount of calcium isotopes. The method is called Multi-Channel Counter-Current Electrophoresis (MCCCE) which can be found elsewhre. Essential point is the increase of the power density in the migration path. In MCCCE, ions migrate in multi-channels on a boron nitride (BN) plate by which substantial increase of the power density was achieved. We made a tiny prototype instrument with a 10 mm thick BN plate and obtained 3 for an enrichment factor for the ratio of abundance of 48Ca to 43Ca over that of natural abundance. It corresponds to 6 for the enrichment factor of 48Ca to 40Ca. Recently we obtained 10 for the enrichment factor by using 20 mm BN plate. This remarkably large enrichment factor demonstrates that the MCCCE is a realistic and promising method for the enrichment of large amount of ions. This method can be applied to many other elements and compounds. I will describe MCCCE and its effect on the study of double beta decay and other fields.

  16. Sensitive method for the determination of lipophilic marine biotoxins in extracts of mussels and processed shellfish by high-performance liquid chromatography-tandem mass spectrometry based on enrichment by solid-phase extraction.

    Science.gov (United States)

    These, Anja; Scholz, Jana; Preiss-Weigert, Angelika

    2009-05-22

    A solid-phase extraction (SPE) method for the enrichment and clean-up of lipophilic marine biotoxins from extracts of different species of bivalve molluscs and processed shellfish products was developed. Okadaic acid (OA), pectenotoxin2 (PTX2), azaspiracid1 (AZA1) and yessotoxin (YTX) were determined by LC-MS/MS in hydrolyzed and non-hydrolyzed extracts. Applying a concentration factor of 10 the limit of quantification for the four toxins was determined to be 1 microg/kg. An organized in-house ring trial proved transferability of the method protocol and satisfactory results for all four toxins with a relative standard deviation (RSD) of 5-12%. The precision of the whole method including LC-MS detection was determined by processing seven independent extractions analyzed in independent sequences. RSD ranged between 12% and 24%. This SPE method was tested within a concentration range corresponding to the range of the current European Union regulatory limits (up to 160 microg/kg for the OA group), but it would also be applicable to a lower microg/kg range which is important in view of a possible decrease of regulatory limits as proposed by a working group of the European Food Safety Authority. The potential of SPE as a cleaning tool to cope with matrix effects in LC-MS/MS was studied and compared to liquid-liquid portioning.

  17. Enrichment methods to detect bone marrow micrometastases in breast carcinoma patients: clinical relevance

    International Nuclear Information System (INIS)

    Improving technologies for the detection and purification of bone marrow (BM) micrometastatic cells in breast cancer patients should lead to earlier prognosis of the risk of relapse and should make it possible to design more appropriate therapies. The technique used has to overcome the challenges resulting from the small number of target cells (one per million hematopoietic cells) and the heterogeneous expression of micrometastatic cell markers. In the present study, we have assessed the clinical relevance of current methods aimed at detecting rare disseminated carcinoma cells. BM aspirates from 32 carcinoma patients were screened for the presence of micrometastatic cells positive for epithelial cell adhesion molecule and positive for cytokeratins, using optimized immunodetection methods. A comparison with data obtained for 46 control BM aspirates and a correlation with the clinical status of patients were performed. We developed a sensitive and efficient immunomagnetic protocol for the enrichment of BM micrometastases. This method was used to divide 32 breast carcinoma patients into three categories according to their epithelial cell adhesion molecule status. These categories were highly correlated with the recently revised American Joint Committee on Cancer staging system for breast cancer, demonstrating the clinical relevance of this simple and reliable immunomagnetic technique. We also evaluated immunocytochemical detection of cytokeratin-positive cells and cytomorphological parameters. Immunocytochemistry-based methods for the detection of BM micrometastases did not provide any information about the clinical status of patients, but helped to refine the immunomagnetic data by confirming the presence of micrometastases in some cases. We also tested a new density gradient centrifugation system, able to enrich the tumor fraction of BM specimens by twofold to threefold as compared with standard Ficoll methods. These improved methods for the detection of

  18. Study on atmospheric hydrogen enrichment by cryopump method and isotope separation by gas chromatography

    International Nuclear Information System (INIS)

    To obtain the information of source of atmospheric hydrogen tritium an analysis of tritium isotopes is thought to be effective. So an atmospheric hydrogen enrichment apparatus and a cryogenic gas chromatographic column were made. Experiments were carried out to study the performance of cryopump to enrich atmospheric hydrogen and the column to separate hydrogen isotopes that obtained by cryopump method. The cryopump was able to process about 1000 1 atmosphere and the column was able to separate hydrogen isotopes with good resolution. (author)

  19. Enrichment of the hydrogen-producing microbial community from marine intertidal sludge by different pretreatment methods

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Hongyan [Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Shinan District, Qingdao 266071, Shandong (China); College of Marine Science and Engineering, University of Science and Technology, Tianjin 300457 (China); Graduate School, Chinese Academy of Sciences, Beijing 100039 (China); Wang, Guangce [Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, Shinan District, Qingdao 266071, Shandong (China); College of Marine Science and Engineering, University of Science and Technology, Tianjin 300457 (China); Zhu, Daling; Pan, Guanghua [College of Marine Science and Engineering, University of Science and Technology, Tianjin 300457 (China)

    2009-12-15

    To determine the effects of pretreatment on hydrogen production and the hydrogen-producing microbial community, we treated the sludge from the intertidal zone of a bathing beach in Tianjin with four different pretreatment methods, including acid treatment, heat-shock, base treatment as well as freezing and thawing. The results showed that acid pretreatment significantly promoted the hydrogen production by sludge and provided the highest efficiency of hydrogen production among the four methods. The efficiency of the hydrogen production of the acid-pretreated sludge was 0.86 {+-} 0.07 mol H{sub 2}/mol glucose (mean {+-} S.E.), whereas that of the sludge treated with heat-shock, freezing and thawing, base method and control was 0.41 {+-} 0.03 mol H{sub 2}/mol glucose, 0.17 {+-} 0.01 mol H{sub 2}/mol glucose, 0.11 {+-} 0.01 mol H{sub 2}/mol glucose and 0.20 {+-} 0.04 mol H{sub 2}/mol glucose, respectively. The result of denaturing gradient gel electrophoresis (DGGE) showed that pretreatment methods altered the composition of the microbial community that accounts for hydrogen production. Acid and heat pretreatments were favorable to enrich the dominant hydrogen-producing bacterium, i.e. Clostridium sp., Enterococcus sp. and Bacillus sp. However, besides hydrogen-producing bacteria, much non-hydrogen-producing Lactobacillus sp. was also found in the sludge pretreated with base, freezing and thawing methods. Therefore, based on our results, we concluded that, among the four pretreatment methods using acid, heat-shock, base or freezing and thawing, acid pretreatment was the most effective method for promoting hydrogen production of microbial community. (author)

  20. WaveSeq: a novel data-driven method of detecting histone modification enrichments using wavelets.

    Directory of Open Access Journals (Sweden)

    Apratim Mitra

    Full Text Available BACKGROUND: Chromatin immunoprecipitation followed by next-generation sequencing is a genome-wide analysis technique that can be used to detect various epigenetic phenomena such as, transcription factor binding sites and histone modifications. Histone modification profiles can be either punctate or diffuse which makes it difficult to distinguish regions of enrichment from background noise. With the discovery of histone marks having a wide variety of enrichment patterns, there is an urgent need for analysis methods that are robust to various data characteristics and capable of detecting a broad range of enrichment patterns. RESULTS: To address these challenges we propose WaveSeq, a novel data-driven method of detecting regions of significant enrichment in ChIP-Seq data. Our approach utilizes the wavelet transform, is free of distributional assumptions and is robust to diverse data characteristics such as low signal-to-noise ratios and broad enrichment patterns. Using publicly available datasets we showed that WaveSeq compares favorably with other published methods, exhibiting high sensitivity and precision for both punctate and diffuse enrichment regions even in the absence of a control data set. The application of our algorithm to a complex histone modification data set helped make novel functional discoveries which further underlined its utility in such an experimental setup. CONCLUSIONS: WaveSeq is a highly sensitive method capable of accurate identification of enriched regions in a broad range of data sets. WaveSeq can detect both narrow and broad peaks with a high degree of accuracy even in low signal-to-noise ratio data sets. WaveSeq is also suited for application in complex experimental scenarios, helping make biologically relevant functional discoveries.

  1. Evaluation of Methyl-Binding Domain Based Enrichment Approaches Revisited.

    Directory of Open Access Journals (Sweden)

    Karolina A Aberg

    Full Text Available Methyl-binding domain (MBD enrichment followed by deep sequencing (MBD-seq, is a robust and cost efficient approach for methylome-wide association studies (MWAS. MBD-seq has been demonstrated to be capable of identifying differentially methylated regions, detecting previously reported robust associations and producing findings that replicate with other technologies such as targeted pyrosequencing of bisulfite converted DNA. There are several kits commercially available that can be used for MBD enrichment. Our previous work has involved MethylMiner (Life Technologies, Foster City, CA, USA that we chose after careful investigation of its properties. However, in a recent evaluation of five commercially available MBD-enrichment kits the performance of the MethylMiner was deemed poor. Given our positive experience with MethylMiner, we were surprised by this report. In an attempt to reproduce these findings we here have performed a direct comparison of MethylMiner with MethylCap (Diagenode Inc, Denville, NJ, USA, the best performing kit in that study. We find that both MethylMiner and MethylCap are two well performing MBD-enrichment kits. However, MethylMiner shows somewhat better enrichment efficiency and lower levels of background "noise". In addition, for the purpose of MWAS where we want to investigate the majority of CpGs, we find MethylMiner to be superior as it allows tailoring the enrichment to the regions where most CpGs are located. Using targeted bisulfite sequencing we confirmed that sites where methylation was detected by either MethylMiner or by MethylCap indeed were methylated.

  2. Gene Ontology and KEGG Pathway Enrichment Analysis of a Drug Target-Based Classification System.

    Directory of Open Access Journals (Sweden)

    Lei Chen

    Full Text Available Drug-target interaction (DTI is a key aspect in pharmaceutical research. With the ever-increasing new drug data resources, computational approaches have emerged as powerful and labor-saving tools in predicting new DTIs. However, so far, most of these predictions have been based on structural similarities rather than biological relevance. In this study, we proposed for the first time a "GO and KEGG enrichment score" method to represent a certain category of drug molecules by further classification and interpretation of the DTI database. A benchmark dataset consisting of 2,015 drugs that are assigned to nine categories ((1 G protein-coupled receptors, (2 cytokine receptors, (3 nuclear receptors, (4 ion channels, (5 transporters, (6 enzymes, (7 protein kinases, (8 cellular antigens and (9 pathogens was constructed by collecting data from KEGG. We analyzed each category and each drug for its contribution in GO terms and KEGG pathways using the popular feature selection "minimum redundancy maximum relevance (mRMR" method, and key GO terms and KEGG pathways were extracted. Our analysis revealed the top enriched GO terms and KEGG pathways of each drug category, which were highly enriched in the literature and clinical trials. Our results provide for the first time the biological relevance among drugs, targets and biological functions, which serves as a new basis for future DTI predictions.

  3. Characterization of the surface properties of nitrogen-enriched carbons by inverse gas chromatography methods

    Energy Technology Data Exchange (ETDEWEB)

    Vagner, C.; Finqueneisel, G.; Zimny, T.; Burg, P.; Grzyb, B.; Machnikowski, J.; Weber, J.V. [University of Metz, St. Avold (France)

    2003-07-01

    The characterization of the surface properties of carbonaceous materials by inverse gas chromatography (IGC) techniques is described. The cokes investigated were produced by the co-pyrolysis of a coal-tar pitch (CTP) with different amounts of polyacrylonitrile (PAN) as a possible method to synthesize carbonaceous materials enriched in nitrogen. IGC at infinite dilution and LSER (linear solvation energy relationship) techniques were used to determine the physical and chemical surface properties of the cokes. In general, the surface free energy of adsorption is due to both dispersive and specific interactions. The dispersive component of the surface free energy was determined using n-alkane probes. For the specific component, which is primarily due to acid-base interactions, different polar probes were used. The LSER method was applied to improve our understanding of the adsorption process in terms of molecular interactions. We show that, to characterize dispersive interactions using n-alkanes, the LSER and IGC methods are equivalent. On the other hand, with both methods we find that all the samples present acidic and basic characteristics. However, the sensitivity of the LSER method does not allow one to discriminate between the three samples in terms of specific interactions.

  4. An evaluation of different target enrichment methods in pooled sequencing designs for complex disease association studies.

    Directory of Open Access Journals (Sweden)

    Aaron G Day-Williams

    Full Text Available Pooled sequencing can be a cost-effective approach to disease variant discovery, but its applicability in association studies remains unclear. We compare sequence enrichment methods coupled to next-generation sequencing in non-indexed pools of 1, 2, 10, 20 and 50 individuals and assess their ability to discover variants and to estimate their allele frequencies. We find that pooled resequencing is most usefully applied as a variant discovery tool due to limitations in estimating allele frequency with high enough accuracy for association studies, and that in-solution hybrid-capture performs best among the enrichment methods examined regardless of pool size.

  5. Thermo-elastic extended meshfree method for fracture without crack tip enrichment

    Institute of Scientific and Technical Information of China (English)

    A. ASADPOUR

    2015-01-01

    This is the first manuscript presenting an extended meshfree method for thermo- elastic fracture which does not exploit a crack tip enrichment. The crack is modeled by partition of unity enrichment of the displacement and temperature field. Only a step function is employed that facilitates the implementation. To ensure that crack tip is at the correct position, a Lagrange multiplier field ahead of the crack tip is introduced along a line. The Lagrange multiplier nodal parameters are discretised with the available meshfree functions. Two benchmark examples illustrate the efficiency of the method.

  6. Assessment of the latest NGS enrichment capture methods in clinical context.

    Science.gov (United States)

    García-García, Gema; Baux, David; Faugère, Valérie; Moclyn, Mélody; Koenig, Michel; Claustres, Mireille; Roux, Anne-Françoise

    2016-01-01

    Enrichment capture methods for NGS are widely used, however, they evolve rapidly and it is necessary to periodically measure their strengths and weaknesses before transfer to diagnostic services. We assessed two recently released custom DNA solution-capture enrichment methods for NGS, namely Illumina NRCCE and Agilent SureSelect(QXT), against a reference method NimbleGen SeqCap EZ Choice on a similar gene panel, sharing 678 kb and 110 genes. Two Illumina MiSeq runs of 12 samples each have been performed, for each of the three methods, using the same 24 patients (affected with sensorineural disorders). Technical outcomes have been computed and compared, including depth and evenness of coverage, enrichment in targeted regions, performance in GC-rich regions and ability to generate consistent variant datasets. While we show that the three methods resulted in suitable datasets for standard DNA variant discovery, we describe significant differences between the results for the above parameters. NimbleGen offered the best depth of coverage and evenness, while NRCCE showed the highest on target levels but high duplicate rates. SureSelect(QXT) showed an overall quality close to that of NimbleGen. The new methods exhibit reduced preparation time but behave differently. These findings will guide laboratories in their choice of library enrichment approach. PMID:26864517

  7. Assessment of the latest NGS enrichment capture methods in clinical context.

    Science.gov (United States)

    García-García, Gema; Baux, David; Faugère, Valérie; Moclyn, Mélody; Koenig, Michel; Claustres, Mireille; Roux, Anne-Françoise

    2016-02-11

    Enrichment capture methods for NGS are widely used, however, they evolve rapidly and it is necessary to periodically measure their strengths and weaknesses before transfer to diagnostic services. We assessed two recently released custom DNA solution-capture enrichment methods for NGS, namely Illumina NRCCE and Agilent SureSelect(QXT), against a reference method NimbleGen SeqCap EZ Choice on a similar gene panel, sharing 678 kb and 110 genes. Two Illumina MiSeq runs of 12 samples each have been performed, for each of the three methods, using the same 24 patients (affected with sensorineural disorders). Technical outcomes have been computed and compared, including depth and evenness of coverage, enrichment in targeted regions, performance in GC-rich regions and ability to generate consistent variant datasets. While we show that the three methods resulted in suitable datasets for standard DNA variant discovery, we describe significant differences between the results for the above parameters. NimbleGen offered the best depth of coverage and evenness, while NRCCE showed the highest on target levels but high duplicate rates. SureSelect(QXT) showed an overall quality close to that of NimbleGen. The new methods exhibit reduced preparation time but behave differently. These findings will guide laboratories in their choice of library enrichment approach.

  8. Method for semi-automated microscopy of filtration-enriched circulating tumor cells

    OpenAIRE

    Pailler, Emma; Oulhen, Marianne; Billiot, Fanny; Galland, Alexandre; Auger, Nathalie; Faugeroux, Vincent; Laplace-Builhé, Corinne; Besse, Benjamin; Loriot, Yohann; Ngo-Camus, Maud; Hemanda, Merouan; Colin R. Lindsay; Soria, Jean-Charles; Vielh, Philippe; Farace, Françoise

    2016-01-01

    Background Circulating tumor cell (CTC)-filtration methods capture high numbers of CTCs in non-small-cell lung cancer (NSCLC) and metastatic prostate cancer (mPCa) patients, and hold promise as a non-invasive technique for treatment selection and disease monitoring. However filters have drawbacks that make the automation of microscopy challenging. We report the semi-automated microscopy method we developed to analyze filtration-enriched CTCs from NSCLC and mPCa patients. Methods Spiked cell l...

  9. Evaluating the Outcomes of Gerontological Curriculum Enrichment: A Multi-Method Approach

    Science.gov (United States)

    Dorfman, Lorraine T.; Murty, Susan A.; Ingram, Jerry G.; Li, Han

    2007-01-01

    This study describes a multi-method approach to evaluating a gerontological social work curriculum enrichment initiative funded by the John A. Hartford Foundation. The project involved all required first year core courses in the BA and MSW curricula. Data were collected from students at three geographically dispersed academic centers of a School…

  10. The method of natural water enrichment in oxygen-18; Sposob wzbogacania wody naturalnej w tlen-18

    Energy Technology Data Exchange (ETDEWEB)

    Chmielewski, A.G.; Zakrzewska-Trznadel, G. [Institute of Nuclear Chemistry and Technology, Warsaw (Poland); Miljevic, N. [Institut za Nuklearne Nauke Boris Kidric, Belgrade (Yugoslavia); Van Hook, A. [Tennessee Univ., Knoxville, TN (United States). Dept. of Chemistry

    1993-05-31

    The method of natural water enrichment in oxygen-18 has been presented. The method consists in pervaporation process which has ben carried out on semi-permeable membranes. The vacuum conditions have been made on the vapor side of membrane. The best process results have been achieved on hydrophobic polyester membranes. The scheme of the installation and description of the equipment needed have been also included. 21 refs, 3 figs, 1 tab.

  11. Isolation and enumeration of Campylobacter jejuni from poultry products by a selective enrichment method.

    Science.gov (United States)

    Wesley, R D; Swaminathan, B; Stadelman, W J

    1983-11-01

    A direct selective enrichment procedure was developed for the isolation of Campylobacter jejuni from poultry products. The selective enrichment medium (ATB) consisted of (per liter) tryptose (20 g), yeast extract (2.5 g), sodium chloride (5 g), FBP supplement (ferrous sulfate [0.25 g], sodium metabisulfite [0.25 g], sodium pyruvate [0.25 g]), bicine (10 g), and agar (1 g). Hematin solution (6.25 ml; prepared by dissolving 0.032 g of bovine hemin in 10 ml of 0.15 N sodium hydroxide solution and autoclaving at 0.35 kg/cm2 for 30 min), rifampin (25 mg), cefsulodin (6.25 mg), and polymyxin B sulfate (20,000 IU) were added after the medium was sterilized. The pH was adjusted to 8.0. Samples were enriched in the above medium at 42 degrees C for 48 h under an atmosphere of 5% O2, 10% CO2, and 85% N2. Enrichment cultures were streaked on a plating medium composed of Brucella agar, hematin solution, FBP supplement, and the above antibiotics. Plates were incubated under the same conditions as above. Suspect colonies from the plates were confirmed to be C. jejuni by morphological examination, growth characteristics, and biochemical tests. The above method yielded 25 isolates of C. jejuni from 50 samples of retail cut-up chicken and chicken parts, whereas a more complex method involving filtration, centrifugation, selective enrichment under a flowing atmosphere, and membrane filtration yielded only 6 positives from the same samples. The new isolation procedure was particularly effective in isolating C. jejuni in the presence of large numbers of Pseudomonas aeruginosa.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:6651294

  12. An Enriched Constitutive Model for Fracture Propagation Analysis using the Material Point Method

    CERN Document Server

    Nguyen, Giang Dinh

    2013-01-01

    We develop a novel constitutive modeling approach for the analysis of fracture propagation in quasi-brittle materials using the Material Point Method. The kinematics of constitutive models is enriched with an additional mode of localized deformation to take into account the strain discontinuity once cracking has occurred. The crack details therefore can be stored at material point level and there is no need to enrich the kinematics of finite elements to capture the localization caused by fracturing processes. This enhancement also removes the drawback of classical smeared crack approach in producing unphysical snapping back constitutive responses when the spatial resolution is not fine enough. All these facilitate the implementation of the new approach in the Material Point Method for analysis of large scale problems. Numerical examples of fracture propagation are used to demonstrate the effectiveness and potentials of the new approach.

  13. Method of oxygen-enriched two-stage underground coal gasification

    Institute of Scientific and Technical Information of China (English)

    Liu Hongtao; Chen Feng; Pan Xia; Yao Kai; Liu Shuqin

    2011-01-01

    Two-stage underground coal gasification was studied to improve the caloric value of the syngas and to extend gas production times. A model test using the oxygen-enriched two-stage coal gasification method was carried out. The composition of the gas produced, the time ratio of the two stages, and the role of the temperature field were analysed. The results show that oxygen-enriched two-stage gasification shortens the time of the first stage and prolongs the time of the second stage. Feed oxygen concentrations of 30%,35%, 40%, 45%, 60%, or 80% gave time ratios (first stage to second stage) of 1:0.12, 1:0.21, 1:0.51, 1:0.64,1:0.90, and 1:4.0 respectively. Cooling rates of the temperature field after steam injection decreased with time from about 19.1-27.4 ℃/min to 2.3-6.8 ℃/min. But this rate increased with increasing oxygen concentrations in the first stage. The caloric value of the syngas improves with increased oxygen concentration in the first stage. Injection of 80% oxygen-enriched air gave gas with the highest caloric value and also gave the longest production time. The caloric value of the gas obtained from the oxygenenriched two-stage gasification method lies in the range from 5.31 MJ/Nm3 to 10.54 MJ/Nm3.

  14. Methods for Determining the Statistical Significance of Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership

    Directory of Open Access Journals (Sweden)

    Ernesto eIacucci

    2012-02-01

    Full Text Available High-throughput molecular biology studies, such as microarray assays of gene expression, two-hybrid experiments for detecting protein interactions, or ChIP-Seq experiments for transcription factor binding, often result in an interesting set of genes—say, genes that are co-expressed or bound by the same factor. One way of understanding the biological meaning of such a set is to consider what processes or functions, as defined in an ontology, are over-represented (enriched or under-represented (depleted among genes in the set. Usually, the significance of enrichment or depletion scores is based on simple statistical models and on the membership of genes in different classifications. We consider the more general problem of computing p-values for arbitrary integer additive statistics, or weighted membership functions. Such membership functions can be used to represent, for example, prior knowledge on the role of certain genes or classifications, differential importance of different classifications or genes to the experimenter, hierarchical relationships between classifications, or different degrees of interestingness or evidence for specific genes. We describe a generic dynamic programming algorithm that can compute exact p-values for arbitrary integer additive statistics. We also describe several optimizations for important special cases, which can provide orders-of-magnitude speed up in the computations. We apply our methods to datasets describing oxidative phosphorylation and parturition and compare p-values based on computations of several different statistics for measuring enrichment. We find major differences between p-values resulting from these statistics, and that some statistics recover gold standard annotations of the data better than others. Our work establishes a theoretical and algorithmic basis for far richer notions of enrichment or depletion of gene sets with respect to gene ontologies than has previously been available.

  15. Enriched Oxygen BAC Method in Advanced Treatment of Textile Dyeing-printing & Alkali-peeling Wastewater

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    A novel Pressurized Enriched Oxygen Biological Activated Carbon (PRBAC) method in treating secondary effluent of textile dying-printing & alkali peeling wastewater was configured. The PRBAC reactor simply increased reactor pressure to create an enriched dissolved oxygen (DO) environment to stimulate the bioactivities of microbes on GAC surface for removing refractory organic matter. Rapid SmallScaled Column Test (RSSCT) was carried out to evaluate the adsorption characteristics of target stream constituents, and over 80% COD components were poorly adsorbable while about 82.5% color inducing matter and 85% UV254 surrogated matter were readily adsorbable. Compared with performances of normal BAC reactor under conventional DO condition, PRBAC achieved 20%, 10% and 50% more removal in COD, color and NH3-N abatement.

  16. A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation.

    Science.gov (United States)

    Yigit, Erbay; Feehery, George R; Langhorst, Bradley W; Stewart, Fiona J; Dimalanta, Eileen T; Pradhan, Sriharsa; Slatko, Barton; Gardner, Andrew F; McFarland, James; Sumner, Christine; Davis, Theodore B

    2016-01-01

    "Microbiome" is used to describe the communities of microorganisms and their genes in a particular environment, including communities in association with a eukaryotic host or part of a host. One challenge in microbiome analysis concerns the presence of host DNA in samples. Removal of host DNA before sequencing results in greater sequence depth of the intended microbiome target population. This unit describes a novel method of microbial DNA enrichment in which methylated host DNA such as human genomic DNA is selectively bound and separated from microbial DNA before next-generation sequencing (NGS) library construction. This microbiome enrichment technique yields a higher fraction of microbial sequencing reads and improved read quality resulting in a reduced cost of downstream data generation and analysis. © 2016 by John Wiley & Sons, Inc. PMID:27366894

  17. Oxidative stability of fish oil-enriched mayonnaise-based salads

    DEFF Research Database (Denmark)

    Sørensen, Ann-Dorit Moltke; Nielsen, Nina Skall; Jacobsen, Charlotte

    2010-01-01

    The oxidative stability of fish oil-enriched mayonnaise-based salads and the influence of different vegetables in shrimp and tuna salads were evaluated. Moreover, the lipid oxidation in the presence of 1% oregano, rosemary, or thyme in fish oil-enriched tuna salad was assessed. The results obtained...... showed that the mayonnaise itself was more oxidatively stable without vegetables and tuna or shrimp, in spite of the higher oil content in mayonnaise (63 and 6.3% fish oil, respectively) compared to salads (∼24 and 2.4% fish oil, respectively). Surprisingly, the fish oil-enriched mayonnaise was only...... significantly different from the standard mayonnaise in the volatile concentration during the end of storage. In fish oil-enriched shrimp salad, asparagus had an anti-oxidative effect and shrimp a pro-oxidative effect, where the anti-oxidative effect of asparagus was strong enough to prevent the pro...

  18. Pedagogical Quality Enrichment in OER-Based Courseware: Guiding Principles

    Science.gov (United States)

    Misra, Pradeep Kumar

    2013-01-01

    This is a critical phase for Open Educational Resources (OER) movement: on one side the number of OER is increasing rapidly, and on other side debates about quality of OER-based courseware are heating up. These debates emanate from the fact that OER-based courseware are supposed to help users to follow a logical learning path and get an engaging,…

  19. Enriched Element-Free Galerkin Method for Fracture Analysis of Functionally Graded Piezoelectric Materials

    Directory of Open Access Journals (Sweden)

    Guang Wei Meng

    2015-01-01

    Full Text Available A new method using the enriched element-free Galerkin method (EEFGM to model functionally graded piezoelectric materials (FGPMs with cracks was presented. To improve the solution accuracy, extended terms were introduced into the approximation function of the conventional element-free Galerkin method (EFGM to describe the displacement and electric fields near the crack. Compared with the conventional EFGM, the new approach requires smaller domain to describe the crack-tip singular field. Additionally, the domain of the nodes was not affected by the crack. Therefore, the visibility method and the diffraction method were no longer needed. The mechanical response of FGPM was discussed, when its material parameters changed exponentially in a certain direction. The modified J-integrals for FGPM were deduced, whose results were compared with the results of the conventional EFGM and the analytical solution. Numerical example results illustrated that this method is feasible and precise.

  20. Protein expression and isotopic enrichment based on induction of the Entner-Doudoroff pathway in Escherichia coli

    Energy Technology Data Exchange (ETDEWEB)

    Refaeli, Bosmat [School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv 69978, Tel Aviv (Israel); Goldbourt, Amir, E-mail: amirgo@post.tau.ac.il [School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Ramat Aviv 69978, Tel Aviv (Israel)

    2012-10-12

    Highlights: Black-Right-Pointing-Pointer The Entner-Doudoroff pathway is induced during protein expression in E. coli. Black-Right-Pointing-Pointer 1-{sup 13}C-gluconate and {sup 15}NH{sub 4}Cl provide a carbonyl-amide protein backbone labeling scheme. Black-Right-Pointing-Pointer The enrichment pattern is determined by nuclear magnetic resonance. -- Abstract: The Entner-Doudoroff pathway is known to exist in many organisms including bacteria, archea and eukarya. Although the common route for carbon catabolism in Escherichia coli is the Embden-Meyerhof-Parnas pathway, it was shown that gluconate catabolism in E. coli occurs via the Entner-Doudoroff pathway. We demonstrate here that by supplying BL21(DE3) competent E.coli cells with gluconate in a minimal growth medium, protein expression can be induced. Nuclear magnetic resonance data of over-expressed ubiquitin show that by using [1-{sup 13}C]-gluconate as the only carbon source, and {sup 15}N-enriched ammonium chloride, sparse isotopic enrichment in the form of a spin-pair carbonyl-amide backbone enrichment is obtained. The specific amino acid labeling pattern is analyzed and is shown to be compatible with Entner-Doudoroff metabolism. Isotopic enrichment serves as a key factor in the biophysical characterization of proteins by various methods including nuclear magnetic resonance, mass spectrometry, infrared spectroscopy and more. Therefore, the method presented here can be applied to study proteins by obtaining sparse enrichment schemes that are not based on the regular glycolytic pathway, or to study the Entner-Doudoroff metabolism during protein expression.

  1. Pedagogical quality enrichment in OER based courseware: Guiding principles

    OpenAIRE

    Pradeep Kumar Misra

    2013-01-01

    This is a critical phase for Open Educational Resources (OER) movement: on one side the number of OER is increasing rapidly, and on other side debates about quality of OER-based courseware are heating up. These debates emanate from the fact that OER-based courseware are supposed to help users to follow a logical learning path and get an engaging, interactive, and enjoyable learning experience. There are two aspects of quality assurance in OER-based courseware: content and pedagogy. The conten...

  2. Enriching location-based games with navigational game activities

    DEFF Research Database (Denmark)

    Nadarajah, Stephanie Githa; Overgaard, Benjamin Nicholas; Pedersen, Peder Walz;

    2016-01-01

    Mobile location-based games are experiences that entertain its players by requiring interactions mainly at points of interest (POIs). Navigation between POIs often involve the use of either a physical or digital map, not taking advantage of the opportunity available to engage users in activities...

  3. Ultratrace DNA Detection Based on the Condensing-Enrichment Effect of Superwettable Microchips.

    Science.gov (United States)

    Xu, Li-Ping; Chen, Yanxia; Yang, Gao; Shi, Wanxin; Dai, Bing; Li, Guannan; Cao, Yanhua; Wen, Yongqiang; Zhang, Xueji; Wang, Shutao

    2015-11-18

    A sensitive nucleic acid detection platform based on superhydrophilic microwells spotted on a superhydrophobic substrate is fabricated. Due to the wettability differences, ultratrace DNA molecules are enriched and the fluorescent signals are amplified to allow more sensitive detection. The biosensing interface based on superwettable materials provides a simple and cost-effective way for ultratrace DNA sensing.

  4. A semantically enriched web usage based recommendation model

    CERN Document Server

    Ramesh, C; Govardhan, A

    2011-01-01

    With the rapid growth of internet technologies, Web has become a huge repository of information and keeps growing exponentially under no editorial control. However the human capability to read, access and understand Web content remains constant. This motivated researchers to provide Web personalized online services such as Web recommendations to alleviate the information overload problem and provide tailored Web experiences to the Web users. Recent studies show that Web usage mining has emerged as a popular approach in providing Web personalization. However conventional Web usage based recommender systems are limited in their ability to use the domain knowledge of the Web application. The focus is only on Web usage data. As a consequence the quality of the discovered patterns is low. In this paper, we propose a novel framework integrating semantic information in the Web usage mining process. Sequential Pattern Mining technique is applied over the semantic space to discover the frequent sequential patterns. Th...

  5. NEAT: an efficient network enrichment analysis test

    OpenAIRE

    Signorelli, Mirko; Vinciotti, Veronica; Wit, Ernst C

    2016-01-01

    Background Network enrichment analysis is a powerful method, which allows to integrate gene enrichment analysis with the information on relationships between genes that is provided by gene networks. Existing tests for network enrichment analysis deal only with undirected networks, they can be computationally slow and are based on normality assumptions. Results We propose NEAT, a test for network enrichment analysis. The test is based on the hypergeometric distribution, which naturally arises ...

  6. Wall modeling via function enrichment within a high-order DG method for RANS simulations of incompressible flow

    CERN Document Server

    Krank, Benjamin; Wall, Wolfgang A

    2016-01-01

    We present a novel approach to wall modeling for RANS within the discontinuous Galerkin method. Wall functions are not used to prescribe boundary conditions as usual but they are built into the function space of the numerical method as a local enrichment, in addition to the standard polynomial component. The Galerkin method then automatically finds the optimal solution among all shape functions available. This idea is fully consistent and gives the wall model vast flexibility in separated boundary layers or high adverse pressure gradients. The wall model is implemented in a high-order discontinuous Galerkin solver for incompressible flow complemented by the Spalart-Allmaras closure model. As benchmark examples we present turbulent channel flow starting from $Re_{\\tau}=180$ and up to $Re_{\\tau}=100{,}000$ as well as flow past periodic hills at Reynolds numbers based on the hill height of $Re_H=10{,}595$ and $Re_{H}=19{,}000$.

  7. A mathematical analysis of the selective enrichment of NECEEM-based non-SELEX.

    Science.gov (United States)

    Yu, Xinliang; Yu, Yixiong

    2014-08-01

    Non-Systematic Evolution of Ligands by EXponential enrichment (SELEX)selection of aptamers, a novel technology for aptamer selection from libraries of random DNA (or RNA) sequences, involves repetitive steps of partitioning without polymerase chain reaction (PCR) amplification between them. This selection is based on non-equilibrium capillary electrophoresis of equilibrium mixtures (NECEEM) and has exceptionally high efficiency. In this paper, a mathematical analysis was carried out to predict the levels of enrichment of non-SELEX selection under different conditions such as different protein concentrations and different efficiencies of partitioning. Investigated results suggest that the magnitude of the bulk affinity (k d) being 10(4) or 10(5) μM for the initial pool has no obvious effect on selective enrichment and that the first, second, and third rounds of non-SELEX selection have different optimum protein concentration values [T f] that give maximum enrichment levels when [T f] ranges from 0.0005 to 0.5 μM. The significance of analyzing selective enrichment of NECEEM-based non-SELEX with the efficiency of partitioning target-bound ligands from free ligands has been demonstrated.

  8. THE INFLUENCE OF STORAGE CONDITIONS OF CANDIED FRUITS ENRICHED WITH VITAMIN C BY DIFFERENT METHODS ON ITS CONTENT

    Directory of Open Access Journals (Sweden)

    Agata Wypchoł

    2010-05-01

    Full Text Available The aim of this work was to study the effect of storage conditions of candied fruits enriched with vitamin C on its concentration in that product. The materials were candied fruits (black chokeberry and black currant enriched with vitamin C by two methods during their production. The final products were stored within 3 months at 8 and 20°C. On the basis of the results it was stated that enrichment method affected the concentration of the vitamin C in fruits measured during storage period at the above conditions. doi:10.5219/55

  9. Property Enrichment of Aged Nickel Base Superalloy Supercast 247A

    Directory of Open Access Journals (Sweden)

    Lavakumar Avala

    2013-12-01

    Full Text Available The commercial nickel-base superalloy Supercast 247A can be used for applications in which is required high mechanical strength and corrosion resistance at elevated temperatures, such as turbine blades and automotive turbocharger rotors. The mechanical properties are totally connected to the morphology, size and distribution of γ' phase and carbides. In order to improve the mechanical properties, the material is subjected to solution and aging heat treatment, to raise the volume fraction of γ' phase in the matrix and to form carbides at grain boundaries. In the present study the Supercast 247A superalloy was remelted and cast to obtain the desired polycrystalline test bars by controlling casting parameters, followed by the investigation of precipitation morphology and mechanical properties with respect to solution treatment and aging treatment. The experimental results show that by well controlled casting parameters the Supercast 247A owns excellent castability to form a superalloy with fine grain structure, resistance to indentation as well as superior strength.

  10. Non-destructive evaluation methods to improve quality control in low enrichment MTR fuel plate production

    International Nuclear Information System (INIS)

    This paper summarises some preliminary non-destructive measurements made recently at the Harwell Laboratory on a prototype low enrichment MTR fuel plate. The measurements were intended to indicate the potential of two different techniques for improving quality control in plate production. Pulse Video Thermography (PVT) is being considered as an alternative to ultrasound transmission measurements for the detection and sizing of lack of thermal bonding between the fuel and the clad layers, either to verify the indications from the established ultrasonic methods before destroying the plate or as a replacement method of inspection. High frequency pulse-echo ultrasonics is being considered for providing maps of clad layer thickness on each side of the plate. The measurements have indicated the potential for both methods, but more work is required, using a test plate containing controlled defects, to establish their capability. (orig.)

  11. Finite element solution of multi-scale transport problems using the least squares based bubble function enrichment

    CERN Document Server

    Yazdani, A

    2011-01-01

    This paper presents an optimum technique based on the least squares method for the derivation of the bubble functions to enrich the standard linear finite elements employed in the formulation of Galerkin weighted-residual statements. The element-level linear shape functions are enhanced with supplementary polynomial bubble functions with undetermined coefficients. The best least squares minimization of the residual functional obtained from the insertion of these trial functions into model equations results in an algebraic system of equations whose solution provides the unknown coefficients in terms of element-level nodal values. The normal finite element procedures for the construction of stiffness matrices may then be followed with no extra degree of freedom incurred as a result of such enrichment. The performance of the proposed method has been tested on a number of benchmark linear transport equations with the results compared against the exact and standard linear element solutions. It has been observed th...

  12. Simulation of performance and nitrogen oxide formation of a hydrogen-enriched diesel engine with the steam injection method

    Directory of Open Access Journals (Sweden)

    Gonca Guven

    2015-01-01

    Full Text Available In the present study, steam injection method (SIM is implemented to a hydrogen-enriched diesel engine in order to improve the levels of performance and NO emissions. As hydrogen enrichment method increases effective efficiency, NO emissions could be increased. However, the SIM is used to control NO emissions and improve the engine performance. Due to these positive effects, hydrogen enrichment and the SIMare applied into a diesel engine by using a two-zone combustion model for30% hydrogen enrichment of the fuel volume and 20% steam ratio of the fuel mass at full load conditions. The results obtained are compared with conventional diesel engine (D, steam injected diesel engine (D+S20, hydrogen-enriched diesel engine (D+H30 and hydrogen-enriched diesel engine with steam injection (D+H30+S20 in terms of performance and NO emissions. In the results, the effective efficiency and effective power improve up to 22.8% and %3.1, as NO emissions decrease up to 22.1%. Hence, the hydrogen enrichment with steam injection method is more environmentally friendly with better performance.

  13. Inquiry-Based Science and Technology Enrichment Program for Middle School-Aged Female Students

    Science.gov (United States)

    Kim, Hanna

    2016-01-01

    This study investigates the effects of an intensive 1-week Inquiry-Based Science and Technology Enrichment Program (InSTEP) designed for middle school-aged female students. InSTEP uses a guided/open inquiry approach that is deepened and redefined as eight sciences and engineering practices in the Next Generation Science Standards, which aimed at…

  14. Temperature-dependent surface-enrichment effects of imidazolium-based ionic liquids.

    Science.gov (United States)

    Kolbeck, Claudia; Deyko, Alexey; Matsuda, Takashi; Kohler, Florian T U; Wasserscheid, Peter; Maier, Florian; Steinrück, Hans-Peter

    2013-11-11

    We present the first systematic study of the influence of temperature on the degree of surface enrichment of 1-alkyl-3-methylimidazolium-based ionic liquids (ILs). Using angle-resolved X-ray photoelectron spectroscopy, we demonstrate that the degree of surface enrichment strongly decreases with increasing temperature for all the studied ILs. For ILs with the same cation, but different anions, [C8 C1 Im]Br, [C8 C1 Im][TfO] and [C8 C1 Im][Tf2 N], no significant differences of the temperature-induced partial loss of surface enrichment are found. Measurements for [C4 C1 Im][TfO], [C8 C1 Im][TfO] and [C18 C1 Im][TfO] indicate a small effect of the chain length. For [C18 C1 Im][TfO], a continuous decrease of alkyl surface enrichment is found with increasing temperature, with no abrupt changes at the phase-transition temperature from the smectic A to the isotropic phase, indicating that the surface enrichment is not affected by this phase transition. PMID:24123477

  15. Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome.

    Science.gov (United States)

    Cui, Pin; Löber, Ulrike; Alquezar-Planas, David E; Ishida, Yasuko; Courtiol, Alexandre; Timms, Peter; Johnson, Rebecca N; Lenz, Dorina; Helgen, Kristofer M; Roca, Alfred L; Hartman, Stefanie; Greenwood, Alex D

    2016-01-01

    Background. Retroviral integration into the host germline results in permanent viral colonization of vertebrate genomes. The koala retrovirus (KoRV) is currently invading the germline of the koala (Phascolarctos cinereus) and provides a unique opportunity for studying retroviral endogenization. Previous analysis of KoRV integration patterns in modern koalas demonstrate that they share integration sites primarily if they are related, indicating that the process is currently driven by vertical transmission rather than infection. However, due to methodological challenges, KoRV integrations have not been comprehensively characterized. Results. To overcome these challenges, we applied and compared three target enrichment techniques coupled with next generation sequencing (NGS) and a newly customized sequence-clustering based computational pipeline to determine the integration sites for 10 museum Queensland and New South Wales (NSW) koala samples collected between the 1870s and late 1980s. A secondary aim of this study sought to identify common integration sites across modern and historical specimens by comparing our dataset to previously published studies. Several million sequences were processed, and the KoRV integration sites in each koala were characterized. Conclusions. Although the three enrichment methods each exhibited bias in integration site retrieval, a combination of two methods, Primer Extension Capture and hybridization capture is recommended for future studies on historical samples. Moreover, identification of integration sites shows that the proportion of integration sites shared between any two koalas is quite small.

  16. Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome.

    Science.gov (United States)

    Cui, Pin; Löber, Ulrike; Alquezar-Planas, David E; Ishida, Yasuko; Courtiol, Alexandre; Timms, Peter; Johnson, Rebecca N; Lenz, Dorina; Helgen, Kristofer M; Roca, Alfred L; Hartman, Stefanie; Greenwood, Alex D

    2016-01-01

    Background. Retroviral integration into the host germline results in permanent viral colonization of vertebrate genomes. The koala retrovirus (KoRV) is currently invading the germline of the koala (Phascolarctos cinereus) and provides a unique opportunity for studying retroviral endogenization. Previous analysis of KoRV integration patterns in modern koalas demonstrate that they share integration sites primarily if they are related, indicating that the process is currently driven by vertical transmission rather than infection. However, due to methodological challenges, KoRV integrations have not been comprehensively characterized. Results. To overcome these challenges, we applied and compared three target enrichment techniques coupled with next generation sequencing (NGS) and a newly customized sequence-clustering based computational pipeline to determine the integration sites for 10 museum Queensland and New South Wales (NSW) koala samples collected between the 1870s and late 1980s. A secondary aim of this study sought to identify common integration sites across modern and historical specimens by comparing our dataset to previously published studies. Several million sequences were processed, and the KoRV integration sites in each koala were characterized. Conclusions. Although the three enrichment methods each exhibited bias in integration site retrieval, a combination of two methods, Primer Extension Capture and hybridization capture is recommended for future studies on historical samples. Moreover, identification of integration sites shows that the proportion of integration sites shared between any two koalas is quite small. PMID:27069793

  17. 235U isotopic characterization of natural and enriched uranium materials by using multigroup analysis (MGA method at a defined geometry using different absorbers and collimators

    Directory of Open Access Journals (Sweden)

    Yücel Haluk

    2015-09-01

    Full Text Available Characterization of nuclear materials is an important topic within the context of nuclear safeguards, homeland security and nuclear forensics. This paper deals with the performance of multigroup gamma-ray analysis (MGA method using the X- and γ-rays in the 80-130 keV region and enrichment meter principle (EMP based on the analysis of 185.7 keV peak for a certain geometry using different absorbers and collimators. The results from MGA and those of EMP are compared. In particular, the effect of aluminum/lead absorbers and lead collimator on the enrichment determination of 235U in natural and low enriched samples is investigated in a given source-detector geometry. The optimum diameter/height ratio for the Pb-collimator is found to be Dc/Hc = 1.4-1.6 in the chosen geometry. In order to simulate the container walls, ten different thicknesses of Al-absorbers of 141 to 840 mg·cm-2 and six different thicknesses of Pb-absorbers of 1120-7367 mg·cm-2 are interposed between sample and detector. The calibration coefficients (% enrichment/cps are calculated for each geometry. The comparison of the MGA and EMP methods shows that the enrichment meter principle provides more accurate and precise results for 235U abundance than those of MGA method at the chosen geometrical conditions. The present results suggest that a two-step procedure should be used in analyses of uranium enrichment. Firstly MGA method can be applied in situ and then EMP method can be used at a defined geometry in laboratory.

  18. Methods for reducing lipid oxidation in fish-oil-enriched energy bars

    DEFF Research Database (Denmark)

    Nielsen, Nina Skall; Jacobsen, Charlotte

    2009-01-01

    P>Fish oil (FO) enrichment of foods is relevant owing to the beneficial effects of omega-3 polyunsaturated fatty acids on human health. However, the susceptibility of FO to oxidation necessitates careful control to avoid this oxidation. In this study, energy bars were successfully supplemented...... with 5% FO. Heating of bars during baking did, apparently, not increase oxidation. Energy bars produced with neat FO were oxidatively unstable as measured by peroxide value, secondary volatile oxidation products and sensory analysis. Pre-emulsification of the FO with sodium caseinate in water offered...... similar protection towards oxidation as packaging the energy bars in modified atmosphere. These protection methods were although not as efficient as addition of FO as micro-encapsulated powder. Addition of the metal chelator ethylene diamine tetra-acetic acid (EDTA) (100-2000 ppm) to emulsified FO...

  19. Kernel-Based Semantic Relation Detection and Classification via Enriched Parse Tree Structure

    Institute of Scientific and Technical Information of China (English)

    Guo-Dong Zhou; Qiao-Ming Zhu

    2011-01-01

    This paper proposes a tree kernel method of semantic relation detection and classification (RDC) between named entities. It resolves two critical problems in previous tree kernel methods of RDC. First, a new tree kernel is presented to better capture the inherent structural information in a parse tree by enabling the standard convolution tree kernel with context-sensitiveness and approximate matching of sub-trees. Second, an enriched parse tree structure is proposed to well derive necessary structural information, e.g., proper latent annotations, from a parse tree. Evaluation on the ACE RDC corpora shows that both the new tree kernel and the enriched parse tree structure contribute significantly to RDC and our tree kernel method much outperforms the state-of-the-art ones.

  20. Introduction to Statistical Methods for Analyzing Large Data Sets: Gene-Set Enrichment Analysis

    OpenAIRE

    Clark, Neil R.; Ma’ayan, Avi

    2011-01-01

    This Teaching Resource provides lecture notes, slides, and a problem set for a series of lectures introducing the mathematical concepts behind gene-set enrichment analysis (GSEA) and were part of a course entitled “Systems Biology: Biomedical Modeling.” GSEA is a statistical functional enrichment analysis commonly applied to identify enrichment of biological functional categories in sets of ranked differentially expressed genes from genome-wide mRNA expression data sets.

  1. Standard test method for measurement of 235U fraction using enrichment meter principle

    CERN Document Server

    American Society for Testing and Materials. Philadelphia

    2008-01-01

    1.1 This test method covers the quantitative determination of the fraction of 235U in uranium using measurement of the 185.7 keV gamma-ray produced during the decay of 235U. 1.2 This test method is applicable to items containing homogeneous uranium-bearing materials of known chemical composition in which the compound is considered infinitely thick with respect to 185.7 keV gamma-rays. 1.3 This test method can be used for the entire range of 235U fraction as a weight percent, from depleted (0.2 % 235U) to highly enriched (97.5 % 235U). 1.4 Measurement of items that have not reached secular equilibrium between 238U and 234Th may not produce the stated bias when low-resolution detectors are used with the computational method listed in Annex A2. 1.5 The values stated in SI units are to be regarded as standard. No other units of measurement are included in this standard. 1.6 This standard may involve hazardous materials, operations, and equipment. This standard does not purport to address all of the safety co...

  2. Rheology, fatty acid profile and quality characteristics of nutrient enriched pizza base.

    Science.gov (United States)

    Gupta, Chaitali Sen; Milind; Jeyarani, T; Rajiv, Jyotsna

    2015-05-01

    Enrichment of thick bread type pizza base (PZB) was done by substituting wheat flour (WF) with 5, 10 and 15 % soya protein isolate (SPI). The rheological characteristics of WF showed that water absorption increased, extensibility and peak viscosity decreased when level of SPI increased from 5 to 15 %. Baking studies showed that spread ratio decreased and hardness values of PZB increased with the increase in amount of SPI from 5 to15 %. Beyond 10 % SPI, the overall quality of PZB was adversely affected. To the optimal blend of 10 % SPI, 5 % psyllium husk (PH) was added and the hydrogenated fat was replaced by canola oil (CAN) in enriched PZB. The enriched PZB treated with combination of additives had 1.7 and 1.6 times more protein and dietary fiber than the control PZB. Fatty acid analysis showed that the enriched PZB had 58.65 % oleic, 6.58 % linolenic acid and 31.28 % polyunsaturated fatty acid and no Trans fat was present.

  3. Rheology, fatty acid profile and quality characteristics of nutrient enriched pizza base.

    Science.gov (United States)

    Gupta, Chaitali Sen; Milind; Jeyarani, T; Rajiv, Jyotsna

    2015-05-01

    Enrichment of thick bread type pizza base (PZB) was done by substituting wheat flour (WF) with 5, 10 and 15 % soya protein isolate (SPI). The rheological characteristics of WF showed that water absorption increased, extensibility and peak viscosity decreased when level of SPI increased from 5 to 15 %. Baking studies showed that spread ratio decreased and hardness values of PZB increased with the increase in amount of SPI from 5 to15 %. Beyond 10 % SPI, the overall quality of PZB was adversely affected. To the optimal blend of 10 % SPI, 5 % psyllium husk (PH) was added and the hydrogenated fat was replaced by canola oil (CAN) in enriched PZB. The enriched PZB treated with combination of additives had 1.7 and 1.6 times more protein and dietary fiber than the control PZB. Fatty acid analysis showed that the enriched PZB had 58.65 % oleic, 6.58 % linolenic acid and 31.28 % polyunsaturated fatty acid and no Trans fat was present. PMID:25892792

  4. A Technology Based Program That Matches Enrichment Resources With Student Strengths

    OpenAIRE

    J.S. Renzulli; S.M. Reis

    2007-01-01

    Remarkable advances in instructionalcommunication technology (ICT) have now made ispossible to provide high levels of enrichment and thekinds of curricular differentiation that facilitateadvanced learning services to students who have accessto a computer and the Internet. But in order tomaximize the potential if ICT it is necessary to constructprograms that are based on learning theory that goesbeyond the didactic and prescriptive models that haveresulted in too much worksheets-on-line and el...

  5. Development of gel-filter method for high enrichment of low-molecular weight proteins from serum.

    Directory of Open Access Journals (Sweden)

    Lingsheng Chen

    Full Text Available The human serum proteome has been extensively screened for biomarkers. However, the large dynamic range of protein concentrations in serum and the presence of highly abundant and large molecular weight proteins, make identification and detection changes in the amount of low-molecular weight proteins (LMW, molecular weight ≤ 30kDa difficult. Here, we developed a gel-filter method including four layers of different concentration of tricine SDS-PAGE-based gels to block high-molecular weight proteins and enrich LMW proteins. By utilizing this method, we identified 1,576 proteins (n = 2 from 10 μL serum. Among them, 559 (n = 2 proteins belonged to LMW proteins. Furthermore, this gel-filter method could identify 67.4% and 39.8% more LMW proteins than that in representative methods of glycine SDS-PAGE and optimized-DS, respectively. By utilizing SILAC-AQUA approach with labeled recombinant protein as internal standard, the recovery rate for GST spiked in serum during the treatment of gel-filter, optimized-DS, and ProteoMiner was 33.1 ± 0.01%, 18.7 ± 0.01% and 9.6 ± 0.03%, respectively. These results demonstrate that the gel-filter method offers a rapid, highly reproducible and efficient approach for screening biomarkers from serum through proteomic analyses.

  6. Methods for nondestructive assay holdup measurements in shutdown uranium enrichment facilities

    International Nuclear Information System (INIS)

    Measurement surveys of uranium holdup using nondestructive assay (NDA) techniques are being conducted for shutdown gaseous diffusion facilities at the Oak Ridge K-25 Site (formerly the Oak Ridge Gaseous Diffusion Plant). When in operation, these facilities processed UF6 with enrichments ranging from 0.2 to 93 wt % 235U. Following final shutdown of all process facilities, NDA surveys were initiated to provide process holdup data for the planning and implementation of decontamination and decommissioning activities. A three-step process is used to locate and quantify deposits: (1) high-resolution gamma-ray measurements are performed to generally define the relative abundances of radioisotopes present, (2) sizable deposits are identified using gamma-ray scanning methods, and (3) the deposits are quantified using neutron measurement methods. Following initial quantitative measurements, deposit sizes are calculated; high-resolution gamma-ray measurements are then performed on the items containing large deposits. The quantitative estimates for the large deposits are refined on the basis of these measurements. Facility management is using the results of the survey to support a variety of activities including isolation and removal of large deposits; performing health, safety, and environmental analyses; and improving facility nuclear material control and accountability records. 3 refs., 1 tab

  7. Method for Recovery and Immunoaffinity Enrichment of Membrane Proteins Illustrated with Metastatic Ovarian Cancer Tissues

    Directory of Open Access Journals (Sweden)

    Luke V. Schneider

    2012-01-01

    Full Text Available Integral membrane proteins play key biological roles in cell signaling, transport, and pathogen invasion. However, quantitative clinical assays for this critical class of proteins remain elusive and are generally limited to serum-soluble extracellular fragments. Furthermore, classic proteomic approaches to membrane protein analysis typically involve proteolytic digestion of the soluble pieces, resulting in separation of intra- and extracellular segments and significant informational loss. In this paper, we describe the development of a new method for the quantitative extraction of intact integral membrane proteins (including GPCRs from solid metastatic ovarian tumors using pressure cycling technology in combination with a new (ProteoSolve-TD buffer system. This new extraction buffer is compatible with immunoaffinity methods (e.g., ELISA and immunoaffinity chromatography, as well as conventional proteomic techniques (e.g., 2D gels, western blots. We demonstrate near quantitative recovery of membrane proteins EDG2, EDG4, FASLG, KDR, and LAMP-3 by western blots. We have also adapted commercial ELISAs for serum-soluble membrane protein fragments (e.g., sVEGFR2 to measure the tissue titers of their transmembrane progenitors. Finally, we demonstrate the compatibility of the new buffers with immunoaffinity enrichment/mass spectrometric characterization of tissue proteins.

  8. Different EV enrichment methods suitable for clinical settings yield different subpopulations of urinary extracellular vesicles from human samples

    OpenAIRE

    Royo, Felix; Zuñiga-Garcia, Patricia; Sanchez-Mosquera, Pilar; Egia, Ainara; Perez, Amparo; Loizaga, Ana; Arceo, Raquel; Lacasa, Isabel; Rabade, Ainara; Arrieta, Edurne; Bilbao, Roberto; Unda, Miguel; Carracedo, Arkaitz; Falcon-Perez, Juan M.

    2016-01-01

    Urine sample analysis is irreplaceable as a non-invasive method for disease diagnosis and follow-up. However, in urine samples, non-degraded protein and RNA may be only found in urinary extracellular vesicles (uEVs). In recent years, various methods of uEV enrichment using low volumes of urine and unsophisticated equipment have been developed, with variable success. We compared the results of the differential ultracentrifugation procedure with 4 of these methods. The methods tested were a lec...

  9. Stirred suspension bioreactors as a novel method to enrich germ cells from pre-pubertal pig testis.

    Science.gov (United States)

    Dores, C; Rancourt, D; Dobrinski, I

    2015-05-01

    To study spermatogonial stem cells the heterogeneous testicular cell population first needs to be enriched for undifferentiated spermatogonia, which contain the stem cell population. When working with non-rodent models, this step requires working with large numbers of cells. Available cell separation methods rely on differential properties of testicular cell types such as expression of specific cell surface proteins, size, density, or differential adhesion to substrates to separate germ cells from somatic cells. The objective of this study was to develop an approach that allowed germ cell enrichment while providing efficiency of handling large cell numbers. Here, we report the use of stirred suspension bioreactors (SSB) to exploit the adhesion properties of Sertoli cells to enrich cells obtained from pre-pubertal porcine testes for undifferentiated spermatogonia. We also compared the bioreactor approach with an established differential plating method and the combination of both: SSB followed by differential plating. After 66 h of culture, germ cell enrichment in SSBs provided 7.3 ± 1.0-fold (n = 9), differential plating 9.8 ± 2.4-fold (n = 6) and combination of both methods resulted in 9.1 ± 0.3-fold enrichment of germ cells from the initial germ cell population (n = 3). To document functionality of cells recovered from the bioreactor, we demonstrated that cells retained their functional ability to reassemble seminiferous tubules de novo after grafting to mouse hosts and to support spermatogenesis. These results demonstrate that the SSB allows enrichment of germ cells in a controlled and scalable environment providing an efficient method when handling large cell numbers while reducing variability owing to handling.

  10. Variational multiscale enrichment method with mixed boundary conditions for elasto-viscoplastic problems

    Science.gov (United States)

    Zhang, Shuhai; Oskay, Caglar

    2015-04-01

    This manuscript presents the formulation and implementation of the variational multiscale enrichment (VME) method for the analysis of elasto-viscoplastic problems. VME is a global-local approach that allows accurate fine scale representation at small subdomains, where important physical phenomena are likely to occur. The response within far-fields is idealized using a coarse scale representation. The fine scale representation not only approximates the coarse grid residual, but also accounts for the material heterogeneity. A one-parameter family of mixed boundary conditions that range from Dirichlet to Neumann is employed to study the effect of the choice of the boundary conditions at the fine scale on accuracy. The inelastic material behavior is modeled using Perzyna type viscoplasticity coupled with flow stress evolution idealized by the Johnson-Cook model. Numerical verifications are performed to assess the performance of the proposed approach against the direct finite element simulations. The results of verification studies demonstrate that VME with proper boundary conditions accurately model the inelastic response accounting for material heterogeneity.

  11. The separation nozzle method for enrichment of the light uranium isotope

    International Nuclear Information System (INIS)

    The history of the development of the separation nozzle method for enrichment of the light uranium isotope is described as a contribution to a memorandum published by Deutsche Forschungsgemeinschaft. The work was triggered off by an effect which had been observed in fundamental studies on gas kinetics. Development up to the technical maturity covered a period of more than 25 years. The implementation of the project at the Karlsruhe Nuclear Research Center provided an adequate financial and technical framework, the employment of senior staff without limitations in time being of major importance for the continuity of work. The links established between the Institute and the University and the resulting opportunity of having doctoral theses written, on the other hand, gave rise to a permanent flow of young, highly qualified scientists and engineers. Thus the Institut's requirements for junior staff could be satisfied in an optimum way. Although the Center offered a variety of possibilities of internal technical cooperation, important developments were performed jointly with industrial firms experienced in related fields. By this, not only a steady flow of know-how had been accumulated but also the large-scale applicability was ensured at a later date of results jointly obtained. (orig.)

  12. Sonication-based isolation and enrichment of Chlorella protothecoides chloroplasts for illumina genome sequencing

    Energy Technology Data Exchange (ETDEWEB)

    Angelova, Angelina [University of Arizona; Park, Sang-Hycuk [University of Arizona; Kyndt, John [Bellevue University; Fitzsimmons, Kevin [University of Arizona; Brown, Judith K [University of Arizona

    2013-09-01

    With the increasing world demand for biofuel, a number of oleaginous algal species are being considered as renewable sources of oil. Chlorella protothecoides Krüger synthesizes triacylglycerols (TAGs) as storage compounds that can be converted into renewable fuel utilizing an anabolic pathway that is poorly understood. The paucity of algal chloroplast genome sequences has been an important constraint to chloroplast transformation and for studying gene expression in TAGs pathways. In this study, the intact chloroplasts were released from algal cells using sonication followed by sucrose gradient centrifugation, resulting in a 2.36-fold enrichment of chloroplasts from C. protothecoides, based on qPCR analysis. The C. protothecoides chloroplast genome (cpDNA) was determined using the Illumina HiSeq 2000 sequencing platform and found to be 84,576 Kb in size (8.57 Kb) in size, with a GC content of 30.8 %. This is the first report of an optimized protocol that uses a sonication step, followed by sucrose gradient centrifugation, to release and enrich intact chloroplasts from a microalga (C. prototheocoides) of sufficient quality to permit chloroplast genome sequencing with high coverage, while minimizing nuclear genome contamination. The approach is expected to guide chloroplast isolation from other oleaginous algal species for a variety of uses that benefit from enrichment of chloroplasts, ranging from biochemical analysis to genomics studies.

  13. Huntahan* vocab assessment toward enriching mother tongue-based classroom practices

    Directory of Open Access Journals (Sweden)

    Cacho Reynald M.

    2015-01-01

    Full Text Available This two-phase action research examined the profile and knowledge level of Grade III pupils about their knowledge on the distinct local vocabularies in order to formulate enrichment or intervention, to address any deficiency or lack of, and to assess whether such enrichment programs are effective for authentic, localized implementation of the MTB-MLE. The research instruments used in the first phase included survey and vocabulary assessment test. The researchers initially employed descriptive statistics to interpret the result. Majority of the respondents have established residency in Lopez, Quezon for at least four years. All of the pupils speak Tagalog only at home. The first phase of the research revealed that the pupils of Lopez West Elementary School Bldg. 1 performed satisfactorily in the language test. Most of them found that the most difficult words are generally content words. The initial results of this study serve as baseline information implying that the pupils’ level of understanding of the Lopezeños words needs enhancement and/or reinforcements; hence, there is an urgent need to implement the 2nd cycle of this action research. The second phase once implemented seeks to evaluate the effectiveness of the intervention and/or enrichment activities that may guide language teachers in the conduct of classroom-based, culturally sensitive, contextualized language instruction.

  14. Passive markers as a low-cost method of enriching cultural visits on user’s demand

    Directory of Open Access Journals (Sweden)

    Anestis Koutsoudis

    2014-01-01

    Full Text Available The idea of enriching a cultural heritage visitor’s experience by employing mobile devices such as smartphones and tablets is an active research domain. This is mainly due to the worldwide user penetration of such devices along with their continuous hardware performance enhancement. This work presents the experience and feedback gained by one year of operation of an experimental information system that aims in enhancing the experience of a visitor on his/her demand. The evaluated system is based on the use case-scenario where the a mobile device is used to capture and decode passive markers (such as QR-codes that are located on facades of selected important buildings in the old town of Xanthi, Greece, in order to enrich the visitor’s experience through a broad context of historical and architectural information delivered over the Web.   Keywords: On-demand information, Passive marker, QR-code, Smartphone, Visit enrichment.

  15. Rheology, fatty acid profile and quality characteristics of nutrient enriched pizza base

    OpenAIRE

    Gupta, Chaitali Sen; Milind; Jeyarani, T.; Rajiv, Jyotsna

    2014-01-01

    Enrichment of thick bread type pizza base (PZB) was done by substituting wheat flour (WF) with 5, 10 and 15 % soya protein isolate (SPI). The rheological characteristics of WF showed that water absorption increased, extensibility and peak viscosity decreased when level of SPI increased from 5 to 15 %. Baking studies showed that spread ratio decreased and hardness values of PZB increased with the increase in amount of SPI from 5 to15 %. Beyond 10 % SPI, the overall quality of PZB was adversely...

  16. Depletion Gilding: An Ancient Method for Surface Enrichment of Gold Alloys

    CERN Document Server

    Sparavigna, Amelia Carolina

    2016-01-01

    Ancient objects made of noble metal alloys, that is, gold with copper and/or silver, can show the phenomenon of surface enrichment. This phenomenon is regarding the composition of the surface, which has a percentage of gold higher than that of the bulk. This enrichment is obtained by a depletion of the other elements of the alloy, which are, in some manner, removed. This depletion gilding process was used by pre-Columbian populations for their 'tumbaga', a gold-copper alloy, to give it the luster of gold.

  17. Isolation and enumeration of Campylobacter jejuni from poultry products by a selective enrichment method.

    OpenAIRE

    Wesley, R D; Swaminathan, B; Stadelman, W. J.

    1983-01-01

    A direct selective enrichment procedure was developed for the isolation of Campylobacter jejuni from poultry products. The selective enrichment medium (ATB) consisted of (per liter) tryptose (20 g), yeast extract (2.5 g), sodium chloride (5 g), FBP supplement (ferrous sulfate [0.25 g], sodium metabisulfite [0.25 g], sodium pyruvate [0.25 g]), bicine (10 g), and agar (1 g). Hematin solution (6.25 ml; prepared by dissolving 0.032 g of bovine hemin in 10 ml of 0.15 N sodium hydroxide solution an...

  18. Application of biclustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials

    OpenAIRE

    Andrew Williams; Sabina Halappanavar

    2015-01-01

    Background: The presence of diverse types of nanomaterials (NMs) in commerce is growing at an exponential pace. As a result, human exposure to these materials in the environment is inevitable, necessitating the need for rapid and reliable toxicity testing methods to accurately assess the potential hazards associated with NMs. In this study, we applied biclustering and gene set enrichment analysis methods to derive essential features of altered lung transcriptome following exposure to NMs that...

  19. Enriched glucose and dextrin mannitol-based media modulates fibroblast behavior on bacterial cellulose membranes

    Energy Technology Data Exchange (ETDEWEB)

    Stumpf, Taisa R.; Pértile, Renata A.N. [Integrated Technologies Laboratory, Department of Chemical and Food Engineering (Brazil); Rambo, Carlos R., E-mail: rambo@intelab.ufsc.br [Department of Electrical Engineering, Federal University of Santa Catarina, Florianópolis 88040-900 (Brazil); Porto, Luismar M. [Integrated Technologies Laboratory, Department of Chemical and Food Engineering (Brazil)

    2013-12-01

    Bacterial cellulose (BC) produced by Gluconacetobacter hansenii is a suitable biopolymer for biomedical applications. In order to modulate the properties of BC and expand its use as substrate for tissue engineering mainly in the form of biomembranes, glucose or dextrin were added into a BC fermentation mannitol-based medium (BCGl and BCDe, respectively) under static culture conditions. SEM images showed effects on fiber density and porosity on both sides of the BC membranes. Both enriched media decreased the BET surface area, water holding capacity, and rehydration rate. Fourier transform infrared (attenuated total reflectance mode) spectroscopy (FTIR-ATR) analysis revealed no change in the chemical structure of BC. L929 fibroblast cells were seeded on all BC-based membranes and evaluated in aspects of cell adhesion, proliferation and morphology. BCG1 membranes showed the highest biological performance and hold promise for the use in tissue engineering applications. - Highlights: • Glucose and dextrin were used to modify culture media for BC production. • Microarchitecture of BC was different depending on the enriching agent. • Fibroblasts adhered on the surface of BC modified microarchitectures. • Fibroblasts adhered on glucose modified BC exhibited healthy cell morphology.

  20. Single-step enrichment of basophils from human peripheral blood by a novel method using a Percoll density gradient.

    Science.gov (United States)

    Shiono, Hiroyuki; Matsui, Takuya; Okada, Tadashi; Ito, Yoichiro

    2016-08-01

    We have developed a novel continuous flow-through cell separation method using a Percoll density gradient. This method can continuously separate a large number of cells into five fractions according to their densities. To apply this method to the separation of basophils, Percoll density gradients were modified to improve basophil enrichment. When a set of Percoll density gradients was prepared (1.071, 1.075, 1.080, 1.084, and 1.090 g/mL) the basophils in a healthy volunteer were enriched by an average of 23.1 and 63.5% at Percoll densities of 1.075 (fraction 3) and 1.080 g/mL (fraction 4), respectively. On average, the yield of basophils was 1.66 × 10(5) cells in fraction 3 and 1.61 × 10(5) cells in fraction 4 from 9 mL of peripheral blood. The expression of CD203c (cluster of differentiation 203c) on separated basophils was upregulated by anti-immunoglobulin E stimulation similar to basophils in whole blood. Histamine release induced by calcium ionophore was also observed in the separated basophils. The present method will be useful for basophil enrichment since it preserves their function without using counterflow elutriation and immunological reagents, and this method will be effective as a preparative separation for cell purification by flow cytometry. PMID:27293108

  1. Gene-ontology enrichment analysis in two independent family-based samples highlights biologically plausible processes for autism spectrum disorders.

    LENUS (Irish Health Repository)

    Anney, Richard J L

    2012-02-01

    Recent genome-wide association studies (GWAS) have implicated a range of genes from discrete biological pathways in the aetiology of autism. However, despite the strong influence of genetic factors, association studies have yet to identify statistically robust, replicated major effect genes or SNPs. We apply the principle of the SNP ratio test methodology described by O\\'Dushlaine et al to over 2100 families from the Autism Genome Project (AGP). Using a two-stage design we examine association enrichment in 5955 unique gene-ontology classifications across four groupings based on two phenotypic and two ancestral classifications. Based on estimates from simulation we identify excess of association enrichment across all analyses. We observe enrichment in association for sets of genes involved in diverse biological processes, including pyruvate metabolism, transcription factor activation, cell-signalling and cell-cycle regulation. Both genes and processes that show enrichment have previously been examined in autistic disorders and offer biologically plausibility to these findings.

  2. 10 CFR Appendix F to Part 110 - Illustrative List of Laser-Based Enrichment Plant Equipment and Components Under NRC Export...

    Science.gov (United States)

    2010-01-01

    ... 10 Energy 2 2010-01-01 2010-01-01 false Illustrative List of Laser-Based Enrichment Plant... Appendix F to Part 110—Illustrative List of Laser-Based Enrichment Plant Equipment and Components Under NRC Export Licensing Authority Note—Present systems for enrichment processes using lasers fall into...

  3. In vivo protein quality of selected cereal-based staple foods enriched with soybean proteins

    Directory of Open Access Journals (Sweden)

    Laura Acevedo-Pacheco

    2016-10-01

    Full Text Available Background: One way to diminish protein malnutrition in children is by enriching cereal-based flours for the manufacturing of maize tortillas, wheat flour tortillas, and yeast-leavened breads, which are widely consumed among low socio-economic groups. Objective: The aim was to determine and compare the essential amino acid (EAA scores, protein digestibility corrected amino acid scores (PDCAAS, and in vivo protein quality (protein digestibility, protein efficiency ratio (PER, biological values (BV, and net protein utilization (NPU values of regular versus soybean-fortified maize tortillas, yeast-leavened bread, and wheat flour tortillas. Design: To comparatively assess differences in protein quality among maize tortillas, wheat flour tortillas, and yeast-leavened breads, EAA compositions and in vivo studies with weanling rats were performed. The experimental diets based on regular or soybean-fortified food products were compared with a casein-based diet. Food intake, weight gains, PER, dry matter and protein digestibility, BV, NPU, and PDCAAS were assessed. The soybean-fortified tortillas contained 6% of defatted soybean flour, whereas the yeast-leavened bread flour contained 4.5% of soybean concentrate. Results: The soybean-fortified tortillas and bread contained higher amounts of lysine and tryptophan, which improved their EAA scores and PDCAAS. Rats fed diets based on soybean-fortified maize or wheat tortillas gained considerably more weight and had better BV and NPU values compared with counterparts fed with respective regular products. As a result, fortified maize tortillas and wheat flour tortillas improved PER from 0.73 to 1.64 and 0.69 to 1.77, respectively. The PER improvement was not as evident in rats fed the enriched yeast-leavened bread because the formulation contained sugar that decreased lysine availability possibly to Maillard reactions. Conclusions: The proposed enrichment of cereal-based foods with soybean proteins greatly

  4. Efficient dielectrophoretic cell enrichment using a dielectrophoresis-well based system.

    Science.gov (United States)

    Abdul Razak, Mohd Azhar; Hoettges, Kai F; Fatoyinbo, Henry O; Labeed, Fatima H; Hughes, Michael P

    2013-01-01

    Whilst laboratory-on-chip cell separation systems using dielectrophoresis are increasingly reported in the literature, many systems are afflicted by factors which impede "real world" performance, chief among these being cell loss (in dead spaces, attached to glass and tubing surfaces, or sedimentation from flow), and designs with large channel height-to-width ratios (large channel widths, small channel heights) that make the systems difficult to interface with other microfluidic systems. In this paper, we present a scalable structure based on 3D wells with approximately unity height-to-width ratios (based on tubes with electrodes on the sides), which is capable of enriching yeast cell populations whilst ensuring that up to 94.3% of cells processed through the device can be collected in tubes beyond the output.

  5. Enriched glucose and dextrin mannitol-based media modulates fibroblast behavior on bacterial cellulose membranes.

    Science.gov (United States)

    Stumpf, Taisa R; Pértile, Renata A N; Rambo, Carlos R; Porto, Luismar M

    2013-12-01

    Bacterial cellulose (BC) produced by Gluconacetobacter hansenii is a suitable biopolymer for biomedical applications. In order to modulate the properties of BC and expand its use as substrate for tissue engineering mainly in the form of biomembranes, glucose or dextrin were added into a BC fermentation mannitol-based medium (BCGl and BCDe, respectively) under static culture conditions. SEM images showed effects on fiber density and porosity on both sides of the BC membranes. Both enriched media decreased the BET surface area, water holding capacity, and rehydration rate. Fourier transform infrared (attenuated total reflectance mode) spectroscopy (FTIR-ATR) analysis revealed no change in the chemical structure of BC. L929 fibroblast cells were seeded on all BC-based membranes and evaluated in aspects of cell adhesion, proliferation and morphology. BCG1 membranes showed the highest biological performance and hold promise for the use in tissue engineering applications.

  6. Comparison of subtypes of Listeria monocytogenes isolates from naturally contaminated watershed samples using a combination of non-selective and selective enrichment methods

    Science.gov (United States)

    Two enrichment methods for Listeria monocytogenes using Immuno Magnetic Separation were tested to determine if they selected the same subtypes of isolates. Both methods included a non-selective enrichment and one included subculture in Fraser Broth. Naturally contaminated watershed samples from the ...

  7. A Technology Based Program That Matches Enrichment Resources With Student Strengths

    Directory of Open Access Journals (Sweden)

    J.S. Renzulli

    2007-09-01

    Full Text Available Remarkable advances in instructionalcommunication technology (ICT have now made ispossible to provide high levels of enrichment and thekinds of curricular differentiation that facilitateadvanced learning services to students who have accessto a computer and the Internet. But in order tomaximize the potential if ICT it is necessary to constructprograms that are based on learning theory that goesbeyond the didactic and prescriptive models that haveresulted in too much worksheets-on-line and electronicencyclopedias. The Renzulli Learning System (RLSuses a strength-based learning theory called theEnrichment Triad Model that is purposefully designedto promote advanced level learning, creativeproductivity, and high levels of student engagement byfocusing on the application of knowledge rather than themere acquisition and storage of information.The Renzulli Learning System is acomprehensive program that begins by providing acomputer-generated profile of each student’s academicstrengths, interests, learning styles, and preferred modesof expression. A search engine then matches Internetresources to the student’s profile from fourteen carefullyscreened data bases that are categorized by subject area,grade level, state curricular standards, and degree ofcomplexity. There are also hundreds of enrichmentactivities that can be down loaded and reproduced forindividual or group learning activities. A managementsystem called the Wizard Project Maker guides studentsin the application of knowledge to teacher or studentselected assignments, independent research studies, orcreative projects that individuals or small groups wouldlike to pursue. Students and teachers can evaluate thequality of students’ products using a rubric called TheStudent Product Assessment Form. Students can rateeach site visited, conduct a self-assessment of what theyhave gained from the site, and place resources in theirown Total talent Portfolio for future use. RLS alsoincludes a

  8. Filtration enrichment method for isolation of auxotrophic mutants of Trichoderma harzianum rifai

    Directory of Open Access Journals (Sweden)

    Cassiolato Ana Maria R.

    1999-01-01

    Full Text Available The isolation of genetic markers, like drug resistance and auxotrophy, is a laborious but important step in genetic research. The isolation of auxotrophic mutants of Trichoderma harzianum using the filtration enrichment technique was more effective than using the total isolation technique. Most of 12 auxotrophic mutants exhibited similar growth rate and higher sporulation when compared with the wild type, but only two mutants (TWS-410 and TW5-523 could grow in 500µg/L of benomyl.

  9. Imaging-based enrichment criteria using deep learning algorithms for efficient clinical trials in mild cognitive impairment.

    Science.gov (United States)

    Ithapu, Vamsi K; Singh, Vikas; Okonkwo, Ozioma C; Chappell, Richard J; Dowling, N Maritza; Johnson, Sterling C

    2015-12-01

    The mild cognitive impairment (MCI) stage of Alzheimer's disease (AD) may be optimal for clinical trials to test potential treatments for preventing or delaying decline to dementia. However, MCI is heterogeneous in that not all cases progress to dementia within the time frame of a trial and some may not have underlying AD pathology. Identifying those MCIs who are most likely to decline during a trial and thus most likely to benefit from treatment will improve trial efficiency and power to detect treatment effects. To this end, using multimodal, imaging-derived, inclusion criteria may be especially beneficial. Here, we present a novel multimodal imaging marker that predicts future cognitive and neural decline from [F-18]fluorodeoxyglucose positron emission tomography (PET), amyloid florbetapir PET, and structural magnetic resonance imaging, based on a new deep learning algorithm (randomized denoising autoencoder marker, rDAm). Using ADNI2 MCI data, we show that using rDAm as a trial enrichment criterion reduces the required sample estimates by at least five times compared with the no-enrichment regime and leads to smaller trials with high statistical power, compared with existing methods. PMID:26093156

  10. Ground-Based Network and Supersite Observations to Complement and Enrich EOS Research

    Science.gov (United States)

    Tsay, Si-Chee; Holben, Brent N.; Welton, Ellsworth J.

    2011-01-01

    Since 1997 NASA has been successfully launching a series of satellites - the Earth Observing System (EOS) - to intensively study, and gain a better understanding of, the Earth as an integrated system. Space-borne remote sensing observations, however, are often plagued by contamination of surface signatures. Thus, ground-based in-situ and remote-sensing measurements, where signals come directly from atmospheric constituents, the sun, and/or the Earth-atmosphere interactions, provide additional information content for comparisons that confirm quantitatively the usefulness of the integrated surface, aircraft, and satellite datasets. Through numerous participations, particularly but not limited to the EOS remote-sensing/retrieval and validation projects over the years, NASA/GSFC has developed and continuously refined ground-based networks and mobile observatories that proved to be vital in providing high temporal measurements, which complement and enrich the satellite observations. These are: the AERO NET (AErosol RObotic NETwork) a federation of ground-based globally distributed network of spectral sun-sky photometers; the MPLNET (Micro-Pulse Lidar NETwork, a similarly organized network of micro-pulse lidar systems measuring aerosol and cloud vertical structure continuously; and the SMART-COMMIT (Surface-sensing Measurements for Atmospheric Radiative Transfer - Chemical, Optical & Microphysical Measurements of In-situ Troposphere, mobile observatories, a suite of spectral radiometers and in-situ probes acquiring supersite measurements. Most MPLNET sites are collocated with those of AERONET, and both networks always support the deployment of SMART-COMMIT worldwide. These data products follow the data structure of EOS conventions: Level-0, instrument archived raw data; Level-1 (or 1.5), real-time data with no (or limited) quality assurance; Level-2, not real high temporal and spectral resolutions. In this talk, we will present NASA/GSFC groundbased facilities, serving

  11. Evaluation of Different N-Glycopeptide Enrichment Methods for N-Glycosylation Sites Mapping in Mouse Brain.

    Science.gov (United States)

    Zhang, Chengqian; Ye, Zilu; Xue, Peng; Shu, Qingbo; Zhou, Yue; Ji, Yanlong; Fu, Ying; Wang, Jifeng; Yang, Fuquan

    2016-09-01

    N-Glycosylation of proteins plays a critical role in many biological pathways. Because highly heterogeneous N-glycopeptides are present in biological sources, the enrichment procedure is a crucial step for mass spectrometry analysis. Five enrichment methods, including IP-ZIC-HILIC, hydrazide chemistry, lectin affinity, ZIC-HILIC-FA, and TiO2 affinity were evaluated and compared in the study of mapping N-glycosylation sites in mouse brain. On the basis of our results, the identified N-glycosylation sites were 1891, 1241, 891, 869, and 710 and the FDR values were 3.29, 5.62, 9.54, 9.54, and 20.02%, respectively. Therefore, IP-ZIC-HILIC enrichment method displayed the highest sensitivity and specificity. In this work, we identified a total of 3446 unique glycosylation sites conforming to the N-glycosylation consensus motif (N-X-T/S/C; X ≠ P) with (18)O labeling in 1597 N-glycoproteins. N-glycosylation site information was used to confirm or correct the transmembrane topology of the 57 novel transmembrane N-glycoproteins.

  12. A method to evaluate environmental enrichments for Asian elephants (Elephas maximus) in zoos

    OpenAIRE

    Holmgren, Mary

    2007-01-01

    Environmental enrichment (EE) is used to improve the life of captive animals by giving them more opportunities to express species-specific behaviours. Zoo elephants are one of the species that is in great need of EE because their environment is often barren. Before making EE permanent, however, it is wise to test first if it works as intended, to save time and money. Maximum price paid is one measure that can be used to assess if an animal has any interest in a resource at all. Food is often ...

  13. Uranium enrichment

    International Nuclear Information System (INIS)

    This paper reports that in 1990 the Department of Energy began a two-year project to illustrate the technical and economic feasibility of a new uranium enrichment technology-the atomic vapor laser isotope separation (AVLIS) process. GAO believes that completing the AVLIS demonstration project will provide valuable information about the technical viability and cost of building an AVLIS plant and will keep future plant construction options open. However, Congress should be aware that DOE still needs to adequately demonstrate AVLIS with full-scale equipment and develop convincing cost projects. Program activities, such as the plant-licensing process, that must be completed before a plant is built, could take many years. Further, an updated and expanded uranium enrichment analysis will be needed before any decision is made about building an AVLIS plant. GAO, which has long supported legislation that would restructure DOE's uranium enrichment program as a government corporation, encourages DOE's goal of transferring AVLIS to the corporation. This could reduce the government's financial risk and help ensure that the decision to build an AVLIS plant is based on commercial concerns. DOE, however, has no alternative plans should the government corporation not be formed. Further, by curtailing a planned public access program, which would have given private firms an opportunity to learn about the technology during the demonstration project, DOE may limit its ability to transfer AVLIS to the private sector

  14. Methods of staining and visualization of sphingolipid enriched and non-enriched plasma membrane regions of Arabidopsis thaliana with fluorescent dyes and lipid analogues

    Directory of Open Access Journals (Sweden)

    Blachutzik Jörg O

    2012-08-01

    Full Text Available Abstract Background Sterols and Sphingolipids form lipid clusters in the plasma membranes of cell types throughout the animal and plant kingdoms. These lipid domains provide a medium for protein signaling complexes at the plasma membrane and are also observed to be principal regions of membrane contact at the inception of infection. We visualized different specific fluorescent lipophilic stains of the both sphingolipid enriched and non-sphingolipid enriched regions in the plasma membranes of live protoplasts of Arabidopsis thaliana. Results Lipid staining protocols for several fluorescent lipid analogues in plants are presented. The most emphasis was placed on successful protocols for the single and dual staining of sphingolipid enriched regions and exclusion of sphingolipid enriched regions on the plasma membrane of Arabidopsis thaliana protoplasts. A secondary focus was placed to ensure that these staining protocols presented still maintain cell viability. Furthermore, the protocols were successfully tested with the spectrally sensitive dye Laurdan. Conclusion Almost all existing staining procedures of the plasma membrane with fluorescent lipid analogues are specified for animal cells and tissues. In order to develop lipid staining protocols for plants, procedures were established with critical steps for the plasma membrane staining of Arabidopsis leaf tissue and protoplasts. The success of the plasma membrane staining protocols was additionally verified by measurements of lipid dynamics by the fluorescence recovery after photobleaching technique and by the observation of new phenomena such as time dependent lipid polarization events in living protoplasts, for which a putative physiological relevance is suggested.

  15. Beyond Job Enrichment to Employment Enrichment

    Science.gov (United States)

    Werther, William B., Jr.

    1975-01-01

    Employment enrichment views the total work environment confronting employees as a system consisting of two overlapping areas: worker-job and worker-organization subsystems. Job enrichment has improved the worker-job subsystem. The focus of this article is on methods of improving the worker-organization relationship. (Author/JB)

  16. BIM-based Modeling and Data Enrichment of Classical Architectural Buildings

    Directory of Open Access Journals (Sweden)

    Fabrizio Ivan Apollonio

    2012-12-01

    Full Text Available EnIn this paper we presented a BIM-based approach for the documentation of Architectural Heritage. Knowledge of classical architecture is first extracted from the treatises for parametric modeling in object level. Then we established a profile library based on semantic studies to sweep out different objects. Variants grow out from the parametric models by editing or regrouping parameters based on grammars. Multiple data including material, structure and real-life state are enriched with respect to different research motivations. The BIM models are expected to ease the modeling process and provide comprehensive data shared among different platforms for further simulations.ItIn questo articolo è presentata una procedura definita nell'ambito dei sistemi BIM con l'obiettivo di documentare il Patrimonio Architettonico. I dati conoscitivi relativi all'architettura classica sono, in una prima fase, ottenuti dai trattati al fine di modellare in maniera parametrica a livello di oggetti. Successivamente è stata definita una libreria di profili, basata su principi semantici, dalla quale è possibile ottenere oggetti differenti. Dati di natura differente, relativi ad esempio ai materiali, alle strutture, allo stato di fatto, sono implementati in funzione delle differenti esigenze. I modelli BIM hanno la potenzialità di facilitare le procedure di modellazione e di fornire informazioni e dati completi che possono essere condivisi tra piattaforme differenti per ulteriori simulazioni ed analisi.

  17. Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.

    Directory of Open Access Journals (Sweden)

    Kari M Ersland

    Full Text Available BACKGROUND: Despite its estimated high heritability, the genetic architecture leading to differences in cognitive performance remains poorly understood. Different cortical regions play important roles in normal cognitive functioning and impairment. Recently, we reported on sets of regionally enriched genes in three different cortical areas (frontomedial, temporal and occipital cortices of the adult rat brain. It has been suggested that genes preferentially, or specifically, expressed in one region or organ reflect functional specialisation. Employing a gene-based approach to the analysis, we used the regionally enriched cortical genes to mine a genome-wide association study (GWAS of the Norwegian Cognitive NeuroGenetics (NCNG sample of healthy adults for association to nine psychometric tests measures. In addition, we explored GWAS data sets for the serious psychiatric disorders schizophrenia (SCZ (n = 3 samples and bipolar affective disorder (BP (n = 3 samples, to which cognitive impairment is linked. PRINCIPAL FINDINGS: At the single gene level, the temporal cortex enriched gene RAR-related orphan receptor B (RORB showed the strongest overall association, namely to a test of verbal intelligence (Vocabulary, P = 7.7E-04. We also applied gene set enrichment analysis (GSEA to test the candidate genes, as gene sets, for enrichment of association signal in the NCNG GWAS and in GWASs of BP and of SCZ. We found that genes differentially expressed in the temporal cortex showed a significant enrichment of association signal in a test measure of non-verbal intelligence (Reasoning in the NCNG sample. CONCLUSION: Our gene-based approach suggests that RORB could be involved in verbal intelligence differences, while the genes enriched in the temporal cortex might be important to intellectual functions as measured by a test of reasoning in the healthy population. These findings warrant further replication in independent samples on cognitive traits.

  18. Development of particle induced gamma-ray emission methods for nondestructive determination of isotopic composition of boron and its total concentration in natural and enriched samples.

    Science.gov (United States)

    Chhillar, Sumit; Acharya, Raghunath; Sodaye, Suparna; Pujari, Pradeep K

    2014-11-18

    We report simple particle induced gamma-ray emission (PIGE) methods using a 4 MeV proton beam for simultaneous and nondestructive determination of the isotopic composition of boron ((10)B/(11)B atom ratio) and total boron concentrations in various solid samples with natural isotopic composition and enriched with (10)B. It involves measurement of prompt gamma-rays at 429, 718, and 2125 keV from (10)B(p,αγ)(7)Be, (10)B(p, p'γ)(10)B, and (11)B(p, p'γ)(11)B reactions, respectively. The isotopic composition of boron in natural and enriched samples was determined by comparing peak area ratios corresponding to (10)B and (11)B of samples to natural boric acid standard. An in situ current normalized PIGE method, using F or Al, was standardized for total B concentration determination. The methods were validated by analyzing stoichiometric boron compounds and applied to samples such as boron carbide, boric acid, carborane, and borosilicate glass. Isotopic compositions of boron in the range of 0.247-2.0 corresponding to (10)B in the range of 19.8-67.0 atom % and total B concentrations in the range of 5-78 wt % were determined. It has been demonstrated that PIGE offers a simple and alternate method for total boron as well as isotopic composition determination in boron based solid samples, including neutron absorbers that are important in nuclear technology.

  19. Effects of four different cooking methods on some quality characteristics of low fat Inegol meatball enriched with flaxseed flour.

    Science.gov (United States)

    Turp, Gulen Yildiz

    2016-11-01

    The present study is concerned with the effects of four different cooking methods (grill, oven, pan and ohmic cooking) on physicochemical parameters (cooking yield moisture retention, fat retention, color, texture), fatty acid composition and sensory characteristics of low fat Turkish traditional Inegol meatball. Flaxseed flour was used as a fat substitute in the production of meatballs. Meatball proximate composition was affected by the cooking methods mainly as a consequence of the weight losses. The highest cooking yield was found in samples cooked in the oven. Flaxseed flour contains high amount of α-linolenic acid and ohmic cooking seems to be the best cooking method in terms of retaining this fatty acid in meatballs enriched with flaxseed flour. However ohmic cooked meatball samples had a brighter surface color and harder texture in comparison with meatball samples cooked via traditional methods. There was no significant difference between the sensory evaluation scores of meatballs. PMID:27258146

  20. A sensory- and consumer-based approach to optimize cheese enrichment with grape skin powders.

    Science.gov (United States)

    Torri, L; Piochi, M; Marchiani, R; Zeppa, G; Dinnella, C; Monteleone, E

    2016-01-01

    The present study aimed to present a sensory- and consumer-based approach to optimize cheese enrichment with grape skin powders (GSP). The combined sensory evaluation approach, involving a descriptive and an affective test, respectively, was applied to evaluate the effect of the addition of grape skin powders from 2 grape varieties (Barbera and Chardonnay) at different levels [0.8, 1.6, and 2.4%; weight (wt) powder/wt curd] on the sensory properties and consumer acceptability of innovative soft cow milk cheeses. The experimental plan envisaged 7 products, 6 fortified prototypes (at rates of Barbera and Chardonnay of 0.8, 1.6, and 2.4%) and a control sample, with 1 wk of ripening. By means of a free choice profile, 21 cheese experts described the sensory properties of prototypes. A central location test with 90 consumers was subsequently conducted to assess the acceptability of samples. The GSP enrichment strongly affected the sensory properties of innovative products, mainly in terms of appearance and texture. Fortified samples were typically described with a marbling aspect (violet or brown as function of the grape variety) and with an increased granularity, sourness, saltiness, and astringency. The fortification also contributed certain vegetable sensations perceived at low intensity (grassy, cereal, nuts), and some potential negative sensations (earthy, animal, winy, varnish). The white color, the homogeneous dough, the compact and elastic texture, and the presence of lactic flavors resulted the positive drivers of preference. On the contrary, the marbling aspect, granularity, sandiness, sourness, saltiness, and astringency negatively affected the cheese acceptability for amounts of powder, exceeding 0.8 and 1.6% for the Barbera and Chardonnay prototypes, respectively. Therefore, the amount of powder resulted a critical parameter for liking of fortified cheeses and a discriminant between the 2 varieties. Reducing the GSP particle size and improving the GSP

  1. Development of microsatellite markers for common bean (Phaseolus vulgaris L.) based on screening of non-enriched, small-insert genomic libraries.

    Science.gov (United States)

    Blair, Matthew W; Torres, Monica Muñoz; Pedraza, Fabio; Giraldo, Martha C; Buendía, Hector F; Hurtado, Natalia

    2009-09-01

    Microsatellite markers are useful genetic tools for a wide array of genomic analyses although their development is time-consuming and requires the identification of simple sequence repeats (SSRs) from genomic sequences. Screening of non-enriched, small-insert libraries is an effective method of SSR isolation that can give an unbiased picture of motif frequency. Here we adapt high-throughput protocols for the screening of plasmid-based libraries using robotic colony picking and filter preparation. Seven non-enriched genomic libraries from common bean genomic DNA were made by digestion with four frequently cutting restriction enzymes, double digestion with a frequently cutting restriction enzyme and a less frequently cutting restriction enzyme, or sonication. Library quality was compared and three of the small-insert libraries were selected for further analysis. Each library was plated and picked into 384-well plates that were used to create high-density filter arrays of over 18 000 clones each, which were screened with oligonucleotide probes for various SSR motifs. Positive clones were found to have low redundancy. One hundred SSR markers were developed and 80 were tested for polymorphism in a standard parental survey. These microsatellite markers derived from non-SSR-enriched libraries should be useful additions to previous markers developed from enriched libraries. PMID:19935925

  2. Evaluation and comparison of rapid methods for the detection of Salmonella in naturally contaminated pine nuts using different pre enrichment media.

    Science.gov (United States)

    Wang, Hua; Gill, Vikas S; Cheng, Chorng-Ming; Gonzalez-Escalona, Narjol; Irvin, Kari A; Zheng, Jie; Bell, Rebecca L; Jacobson, Andrew P; Hammack, Thomas S

    2015-04-01

    Foodborne outbreaks, involving pine nuts and peanut butter, illustrate the need to rapidly detect Salmonella in low moisture foods. However, the current Bacteriological Analytical Manual (BAM) culture method for Salmonella, using lactose broth (LB) as a pre enrichment medium, has not reliably supported real-time quantitative PCR (qPCR) assays for certain foods. We evaluated two qPCR assays in LB and four other pre enrichment media: buffered peptone water (BPW), modified BPW (mBPW), Universal Pre enrichment broth (UPB), and BAX(®) MP media to detect Salmonella in naturally-contaminated pine nuts (2011 outbreak). A four-way comparison among culture method, Pathatrix(®) Auto, VIDAS(®) Easy SLM, and qPCR was conducted. Automated DNA extraction techniques were compared with manual extraction methods (boiling or InstaGene™). There were no significant differences (P > 0.05) among the five pre enrichment media for pine nuts using the culture method. While both qPCR assays produced significantly (P ≤ 0.05) higher false negatives in 24 h pre enriched LB than in the other four media, they were as sensitive as the culture method in BPW, mBPW, UPB, and BAX media. The VIDAS Easy and qPCR were equivalent; Pathatrix was the least effective method. The Automatic PrepSEQ™ DNA extraction, using 1000 μL of pre enrichment, was as effective as manual extraction methods.

  3. Zein based oil-in-glycerol emulgels enriched with β-carotene as margarine alternatives.

    Science.gov (United States)

    Chen, Xiao-Wei; Fu, Shi-Yao; Hou, Jun-Jie; Guo, Jian; Wang, Jin-Mei; Yang, Xiao-Quan

    2016-11-15

    Structuring edible oils into solid lipids without saturated and trans fats has attracted increasing interest due to the benefits for human health and promises potential as novel delivery systems for lipophilic bioactive ingredients. The study shows that a zein stabilized high (ϕ=0.6) oil-in-glycerol (O/G) emulgels enriched with β-carotene was performed, by a facile one-step homogenization. Rheological measurements and morphologies observations indicated that increasing β-carotene resulted in a progressive strengthening of gel-like network and improving their spreadability in the O/G emulgels stabilized by zein, which was closely related to the hydrophobic interaction of zein and β-carotene. The formation of emulgels significantly enhanced the UV photo-stability of β-carotene, and more than 88% of β-carotene was retained in 64h storage under UV exposure, and consequently retarded oil oxidation while storage. Further, cakes prepared using zein-based O/G emulgels as a margarine alternative showed comparable functionalities (texture and sensory attributes) to the standard cake. PMID:27283703

  4. Starch-based extruded cereals enriched in fibers: a behavior of composite solid foams.

    Science.gov (United States)

    Chanvrier, Hélène; Desbois, Fabrice; Perotti, Fabienne; Salzmann, Claire; Chassagne, Sophie; Gumy, Jean-Claude; Blank, Imre

    2013-10-15

    Extruded cereals mainly composed of starch and enriched in fibers were produced with two types of base recipes: (i) one recipe mainly composed of wheat flour and (ii) one recipe mainly composed of corn and soya flours. The addition of fibers was performed through the use of oat bran concentrate or wheat bran, up to 32% of the recipe. The structure of the extrudates, assessed by X-ray tomography, pointed out the decrease of porosity and of mean cells size with the increase of the total dietary fibers content of the recipe. The hardness of the products, i.e. the maximum stress determined by a compression test, was linked to their porosity. The Gibson-Ashby relationship could be applied and the fit was even improved when considering the walls of the solid foam as composite materials. Fibers and proteins can be indeed considered as particles dispersed in the starchy phase. This work thus shows the impact of the structure of the extrudates on their mechanical properties. The structure is taken into account at different length scales; at the level of the porous structure and at the level of the phase of the main biopolymers present in the recipe (starch, proteins and fibers). The mechanical behavior of these products is then discussed according to their characteristics of composite solid foams. PMID:23987420

  5. Application of biclustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials

    Directory of Open Access Journals (Sweden)

    Andrew Williams

    2015-12-01

    Full Text Available Background: The presence of diverse types of nanomaterials (NMs in commerce is growing at an exponential pace. As a result, human exposure to these materials in the environment is inevitable, necessitating the need for rapid and reliable toxicity testing methods to accurately assess the potential hazards associated with NMs. In this study, we applied biclustering and gene set enrichment analysis methods to derive essential features of altered lung transcriptome following exposure to NMs that are associated with lung-specific diseases. Several datasets from public microarray repositories describing pulmonary diseases in mouse models following exposure to a variety of substances were examined and functionally related biclusters of genes showing similar expression profiles were identified. The identified biclusters were then used to conduct a gene set enrichment analysis on pulmonary gene expression profiles derived from mice exposed to nano-titanium dioxide (nano-TiO2, carbon black (CB or carbon nanotubes (CNTs to determine the disease significance of these data-driven gene sets.Results: Biclusters representing inflammation (chemokine activity, DNA binding, cell cycle, apoptosis, reactive oxygen species (ROS and fibrosis processes were identified. All of the NM studies were significant with respect to the bicluster related to chemokine activity (DAVID; FDR p-value = 0.032. The bicluster related to pulmonary fibrosis was enriched in studies where toxicity induced by CNT and CB studies was investigated, suggesting the potential for these materials to induce lung fibrosis. The pro-fibrogenic potential of CNTs is well established. Although CB has not been shown to induce fibrosis, it induces stronger inflammatory, oxidative stress and DNA damage responses than nano-TiO2 particles.Conclusion: The results of the analysis correctly identified all NMs to be inflammogenic and only CB and CNTs as potentially fibrogenic. In addition to identifying several

  6. Methods in Logic Based Control

    DEFF Research Database (Denmark)

    Christensen, Georg Kronborg

    1999-01-01

    Desing and theory of Logic Based Control systems.Boolean Algebra, Karnaugh Map, Quine McClusky's algorithm. Sequential control design. Logic Based Control Method, Cascade Control Method. Implementation techniques: relay, pneumatic, TTL/CMOS,PAL and PLC- and Soft_PLC implementation. PLC...

  7. Laser and gas centrifuge enrichment

    Energy Technology Data Exchange (ETDEWEB)

    Heinonen, Olli [Senior Fellow, Belfer Center for Science and International Affairs, Harvard Kennedy School, Cambridge, Massachusetts (United States)

    2014-05-09

    Principles of uranium isotope enrichment using various laser and gas centrifuge techniques are briefly discussed. Examples on production of high enriched uranium are given. Concerns regarding the possibility of using low end technologies to produce weapons grade uranium are explained. Based on current assessments commercial enrichment services are able to cover the global needs of enriched uranium in the foreseeable future.

  8. Laser and gas centrifuge enrichment

    Science.gov (United States)

    Heinonen, Olli

    2014-05-01

    Principles of uranium isotope enrichment using various laser and gas centrifuge techniques are briefly discussed. Examples on production of high enriched uranium are given. Concerns regarding the possibility of using low end technologies to produce weapons grade uranium are explained. Based on current assessments commercial enrichment services are able to cover the global needs of enriched uranium in the foreseeable future.

  9. A Hybrid Design Optimization Method using Enriched Craig-Bampton Approach

    OpenAIRE

    Akcay Perdahcioglu, D.; Ellenbroek, M.H.M.; Boer

    2009-01-01

    A hybrid design optimization method is presented which combines a number of techniques such as Component Mode Synthesis (CMS), Design of Computer Experiments and Neural Networks for surrogate modeling with Genetic Algorithms and Sequential Quadratic Programming for optimization. In the method, the FE analysis is decomposed and reduced by a well-known CMS technique called the Craig-Bampton method. Since the optimization method requires CMS calculations of the updated model at each of its itera...

  10. A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies.

    Science.gov (United States)

    Blouin, Arnaud G; Ross, Howard A; Hobson-Peters, Jody; O'Brien, Caitlin A; Warren, Ben; MacDiarmid, Robin

    2016-09-01

    Next-generation sequencing technologies enable the rapid identification of viral infection of diseased organisms. However, despite a consistent decrease in sequencing costs, it is difficult to justify their use in large-scale surveys without a virus sequence enrichment technique. As the majority of plant viruses have an RNA genome, a common approach is to extract the double-stranded RNA (dsRNA) replicative form, to enrich the replicating virus genetic material over the host background. The traditional dsRNA extraction is time-consuming and labour-intensive. We present an alternative method to enrich dsRNA from plant extracts using anti-dsRNA monoclonal antibodies in a pull-down assay. The extracted dsRNA can be amplified by reverse transcriptase-polymerase chain reaction and sequenced by next-generation sequencing. In our study, we have selected three distinct plant hosts: Māori potato (Solanum tuberosum), rengarenga (Arthropodium cirratum) and broadleaved dock (Rumex obtusifolius) representing a cultivated crop, a New Zealand-native ornamental plant and a weed, respectively. Of the sequence data obtained, 31-74% of the reads were of viral origin, and we identified five viruses including Potato virus Y and Potato virus S in potato; Turnip mosaic virus in rengarenga (a new host record); and in the dock sample Cherry leaf roll virus and a novel virus belonging to the genus Macluravirus. We believe that this new assay represents a significant opportunity to upscale virus ecology studies from environmental, primary industry and/or medical samples. PMID:26990372

  11. Aquatic sediments pollution estimate using the metal fractionation, secondary phase enrichment factor calculation, and used statistical methods.

    Science.gov (United States)

    Sakan, Sanja; Popović, Aleksandar; Anđelković, Ivan; Đorđević, Dragana

    2016-06-01

    The sequential extraction procedure of the European Community Bureau of Reference (BCR) was applied for the fractionation of Cd, Cr, Cu, Ni, Pb, Zn, Fe, Mn, and V in the Serbian river sediments. The aim of this paper was to describe a new approach in detection of anthropogenic elements in sediments, related to the Serbian river courses in order to assess their metal contamination. For sediment pollution evaluation, the risk assessment code (RAC) and the secondary phase enrichment factor (KSPEF) were used. Metal fractionation showed more easily mobilized forms predominant for copper, zinc, cadmium, manganese, and lead, which can be one of the indicators for anthropogenic source input. Chromium, nickel, iron, and vanadium found in the residual fraction indicate these metals may be an indicator for natural sources input. Based on RAC classification, results of sediments show no risk (Cr and V), low risk (Ni, Pb, and Fe), medium risk (Cu), high risk (Cd and Zn), and very high risk (Mn). The mean values of KSPEF were Cd > Cu > Zn > Ni > Mn > Pb > Fe > Cr > V, decreasing scale of no to moderately severe enrichment. The sediments were found to be contaminated by heavy metals to various extents, mostly Cd, Cu, and Zn. Research has shown the importance of KSPEF in quantifying degree of metal enrichment in sediments using results of sequential extraction. With the application of this factor, which is not frequently used in the scientific literature, the results obtained with sequential extraction can be used not only for assessment of mobility but also to quantify the metal pollution. PMID:26385383

  12. Activity based costing (ABC Method

    Directory of Open Access Journals (Sweden)

    Prof. Ph.D. Saveta Tudorache

    2008-05-01

    Full Text Available In the present paper the need and advantages are presented of using the Activity BasedCosting method, need arising from the need of solving the information pertinence issue. This issue has occurreddue to the limitation of classic methods in this field, limitation also reflected by the disadvantages ofsuch classic methods in establishing complete costs.

  13. Circulating tumour cells: the evolving concept and the inadequacy of their enrichment by EpCAM-based methodology for basic and clinical cancer research.

    Science.gov (United States)

    Grover, P K; Cummins, A G; Price, T J; Roberts-Thomson, I C; Hardingham, J E

    2014-08-01

    Increasing evidence suggests that circulating tumour cells (CTCs) are responsible for metastatic relapse and this has fuelled interest in their detection and quantification. Although numerous methods have been developed for the enrichment and detection of CTCs, none has yet reached the 'gold' standard. Since epithelial cell adhesion molecule (EpCAM)-based enrichment of CTCs offers several advantages, it is one of the most commonly used and has been adapted for high-throughput technology. However, emerging evidence suggests that CTCs are highly heterogeneous: they consist of epithelial tumour cells, epithelial-to-mesenchymal transition (EMT) cells, hybrid (epithelial/EMT(+)) tumour cells, irreversible EMT(+) tumour cells, and circulating tumour stem cells (CTSCs). The EpCAM-based approach does not detect CTCs expressing low levels of EpCAM and non-epithelial phenotypes such as CTSCs and those that have undergone EMT and no longer express EpCAM. Thus, the approach may lead to underestimation of the significance of CTCs, in general, and CTSCs and EMT(+) tumour cells, in particular, in cancer dissemination. Here, we provide a critical review of research literature on the evolving concept of CTCs and the inadequacy of their enrichment by EpCAM-based technology for basic and clinical cancer research. The review also outlines future perspectives in the field.

  14. A Hybrid Design Optimization Method using Enriched Craig-Bampton Approach

    NARCIS (Netherlands)

    Akcay Perdahcioglu, D.; Ellenbroek, M.H.M.; Boer, de A.

    2009-01-01

    A hybrid design optimization method is presented which combines a number of techniques such as Component Mode Synthesis (CMS), Design of Computer Experiments and Neural Networks for surrogate modeling with Genetic Algorithms and Sequential Quadratic Programming for optimization. In the method, the F

  15. Qualitative Methods Can Enrich Quantitative Research on Occupational Stress: An Example from One Occupational Group

    Science.gov (United States)

    Schonfeld, Irvin Sam; Farrell, Edwin

    2010-01-01

    The chapter examines the ways in which qualitative and quantitative methods support each other in research on occupational stress. Qualitative methods include eliciting from workers unconstrained descriptions of work experiences, careful first-hand observations of the workplace, and participant-observers describing "from the inside" a particular…

  16. Highly specific purification of N-glycans using phosphate-based derivatization as an affinity tag in combination with Ti(4+)-SPE enrichment for mass spectrometric analysis.

    Science.gov (United States)

    Zhang, Ying; Peng, Ye; Bin, Zhichao; Wang, Huijie; Lu, Haojie

    2016-08-31

    N-linked protein glycosylation is involved in regulation of a wide variety of cellular processes and associated with numerous diseases. Highly specific identification of N-glycome remains a challenge while its biological significance is acknowledged. The relatively low abundance of glycan in complex biological mixtures, lack of basic sites for protonation, and suppression by other highly abundant proteins/peptides lead to the particularly poor detection sensitivity of N-glycans in the MS analysis. Therefore, the highly specific purification procedure becomes a crucial step prior to MS analysis of the N-glycome. Herein, a novel N-glycans enrichment approach based on phosphate derivatization combined with Ti(4+)-SPE (solid phase extraction) was developed. Briefly, in this strategy, N-glycans were chemically labeled with a phospho-group at their reducing ends, such that the Ti(4+)-SPE microspheres were able to capture the phospho-containing glycans. The enrichment method was developed and optimized using model oligosaccharides (maltoheptaose DP7 and sialylated glycan A1) and also glycans from a standard glycoprotein (asialofetuin, ASF). This method experimentally showed high derivatization efficiency (almost 100%), excellent selectivity (analyzing DP7 in the digests of bovine serum albumin at a mass ratio of 1:100), high enriching recovery (90%), good reproducibility (CVN-glycome in human serum, in which a total of 31 N-glycan masses were identified.

  17. Method Development to Increase Protein Enrichment During Dry Fractionation of Starch-Rich Legumes

    NARCIS (Netherlands)

    Pelgrom, P.J.M.; Boom, R.M.; Schutyser, M.A.I.

    2015-01-01

    A facile method was developed to establish milling settings that optimally separate starch granules from protein bodies and cell wall fibres for starch-rich legumes. Optimal separation was obtained for pea, bean, lentil and chickpea when the particle size distribution curve of flour and isolated sta

  18. A design pattern for event-based processing of security-enriched SOAP messages

    DEFF Research Database (Denmark)

    Gruschka, Nils; Jensen, Meiko; Lo Iacono, Luigi

    2010-01-01

    For Web Services in Cloud Computing contexts, the efficient processing of XML documents is a major topic of interest. Especially for WS-Security-enriched messages, processing performance nowadays tends to become a major issue. Streaming XML processing approaches lead to valuable optimization due ...

  19. twzPEA: A Topology and Working Zone Based Pathway Enrichment Analysis Framework

    Science.gov (United States)

    Sensitive detection of involvement and adaptation of key signaling, regulatory, and metabolic pathways holds the key to deciphering molecular mechanisms such as those in the biomass-to-biofuel conversion process in yeast. Typical gene set enrichment analyses often do not use topology information in...

  20. Enrichment of true positives from structural alerts through the use of novel atomic fragment based descriptors

    DEFF Research Database (Denmark)

    Long, A.; Rydberg, Patrik

    2013-01-01

    To enhance the discrimination rate for methods applying structural alerts and biotransformation rules in the prediction of toxicity and drug metabolism we have developed a set of novel fragment based atomic descriptors. These atomic descriptors encode the properties of the fragments separating an...

  1. Weighted Feature Significance: A Simple, Interpretable Model of Compound Toxicity Based on the Statistical Enrichment of Structural Features

    OpenAIRE

    Huang, Ruili; Southall, Noel; Xia, Menghang; Cho, Ming-Hsuang; Jadhav, Ajit; Nguyen, Dac-Trung; Inglese, James; Tice, Raymond R.; Austin, Christopher P.

    2009-01-01

    In support of the U.S. Tox21 program, we have developed a simple and chemically intuitive model we call weighted feature significance (WFS) to predict the toxicological activity of compounds, based on the statistical enrichment of structural features in toxic compounds. We trained and tested the model on the following: (1) data from quantitative high–throughput screening cytotoxicity and caspase activation assays conducted at the National Institutes of Health Chemical Genomics Center, (2) dat...

  2. Enrichment Method for the Isolation of Bioactive Actinomycetes From Mangrove Sediments of Andaman Islands, India

    Directory of Open Access Journals (Sweden)

    Baskaran, R.

    2011-01-01

    Full Text Available Various pre-treatment methods and three different media were employed for the isolation of bioactive actinomycetes from mangrove sediments of Andaman and Nicobar Islands, India. Sediments from four different sites of mangrove forest were collected and pre-treated by dry heat method, and the media were supplemented with cycloheximide 80 µg/mL and nalidixic acid 75 µg/mL. The mean actinomycetes population density in sediment samples were recorded as 22 CFU-10^-6/gm in KUA medium followed by 12 CFU-10^-6/gm in AIA medium and 8 CFU-10^-6/gm in SCA medium. A total of 42 actinomycetes were isolated, and all the isolates were evaluated for their antibacterial activity against pathogenic bacteria on two different media. Among 42 isolates tested, 22 species were found to be antibacterial metabolite producer against test bacteria namely, Staphylococcus aureus, Bacillus subtilis, Salmonella typhi and Klebsiella pneumoniae. Particularly, the actinomycete strains such as A101, A102, A107, A116, A121, A125, A130, F101, F102, F104, F106, De101 and De102 significantly inhibited the growth of all bacteria which were tested. Of these strains, A107 was identified as Streptomyces spp. This strain had the maximum activity against all used pathogens on both medium. Hence, the isolation, characterization and studies of secondary metabolites of actinomycetes from mangrove sediments in Andaman and Nicobar Island could be a pathway for discovery of antibiotics from marine actinomycetes.

  3. Is Job Enrichment Really Enriching?

    OpenAIRE

    Robert D. Mohr; Cindy Zoghi

    2006-01-01

    This study uses a survey of Canadian workers with rich, matched data on job characteristics to examine whether “enriched” job design, with features like quality circles, feedback, suggestion programs, and task teams, affects job satisfaction. We identify two competing hypotheses on the relationship between enriched jobs and job satisfaction. The “motivation hypothesis,” implies that enrichment will generally increase satisfaction and the “intensification hypothesis,” implies that enrichment m...

  4. Multilevel correlations in the biological phosphorus removal process: From bacterial enrichment to conductivity-based metabolic batch tests and polyphosphatase assays.

    Science.gov (United States)

    Weissbrodt, David G; Maillard, Julien; Brovelli, Alessandro; Chabrelie, Alexandre; May, Jonathan; Holliger, Christof

    2014-12-01

    Enhanced biological phosphorus removal (EBPR) from wastewater relies on the preferential selection of active polyphosphate-accumulating organisms (PAO) in the underlying bacterial community continuum. Efficient management of the bacterial resource requires understanding of population dynamics as well as availability of bioanalytical methods for rapid and regular assessment of relative abundances of active PAOs and their glycogen-accumulating competitors (GAO). A systems approach was adopted here toward the investigation of multilevel correlations from the EBPR bioprocess to the bacterial community, metabolic, and enzymatic levels. Two anaerobic-aerobic sequencing-batch reactors were operated to enrich activated sludge in PAOs and GAOs affiliating with "Candidati Accumulibacter and Competibacter phosphates", respectively. Bacterial selection was optimized by dynamic control of the organic loading rate and the anaerobic contact time. The distinct core bacteriomes mainly comprised populations related to the classes Betaproteobacteria, Cytophagia, and Chloroflexi in the PAO enrichment and of Gammaproteobacteria, Alphaproteobacteria, Acidobacteria, and Sphingobacteria in the GAO enrichment. An anaerobic metabolic batch test based on electrical conductivity evolution and a polyphosphatase enzymatic assay were developed for rapid and low-cost assessment of the active PAO fraction and dephosphatation potential of activated sludge. Linear correlations were obtained between the PAO fraction, biomass specific rate of conductivity increase under anaerobic conditions, and polyphosphate-hydrolyzing activity of PAO/GAO mixtures. The correlations between PAO/GAO ratios, metabolic activities, and conductivity profiles were confirmed by simulations with a mathematical model developed in the aqueous geochemistry software PHREEQC. PMID:24975745

  5. Uranium enrichment

    International Nuclear Information System (INIS)

    GAO was asked to address several questions concerning a number of proposed uranium enrichment bills introduced during the 100th Congress. The bill would have restructured the Department of Energy's uranium enrichment program as a government corporation to allow it to compete more effectively in the domestic and international markets. Some of GAO's findings discussed are: uranium market experts believe and existing market models show that the proposed DOE purchase of a $750 million of uranium from domestic producers may not significantly increase production because of large producer-held inventories; excess uranium enrichment production capacity exists throughout the world; therefore, foreign producers are expected to compete heavily in the United States throughout the 1990s as utilities' contracts with DOE expire; and according to a 1988 agreement between DOE's Offices of Nuclear Energy and Defense Programs, enrichment decommissioning costs, estimated to total $3.6 billion for planning purposes, will be shared by the commercial enrichment program and the government

  6. TRIGA fuel enrichment verification based on the measurement of short-lived fission products

    Energy Technology Data Exchange (ETDEWEB)

    Peir, J.-J.; Liu, C.-C. [Nuclear Science and Technology Development Center, National Tsing Hua University, Hsinchu, Taiwan (China); Wang, T.-K. [Department of Engineering and System Science, National Tsing Hua University, Hsinchu, Taiwan (China)

    1999-06-01

    A method is developed to verify the {sup 235}U content of TRIGA fresh fuel using gamma-ray spectrometry of the short-lived fission products {sup 97}Zr/{sup 97}Nb, {sup 132}I and {sup 140}La. The short-lived fission-product activities can be established by irradiating the fuel in a nuclear reactor. Based on the measured activities, the {sup 235}U content can be deduced by iterative calculations. The aim of this work is to establish a calibration method for estimating the burnup values of the rod-type spent fuels without the need for detailed data on fuel irradiation history.

  7. TRIGA fuel enrichment verification based on the measurement of short-lived fission products

    International Nuclear Information System (INIS)

    A method is developed to verify the 235U content of TRIGA fresh fuel using gamma-ray spectrometry of the short-lived fission products 97Zr/97Nb, 132I and 140La. The short-lived fission-product activities can be established by irradiating the fuel in a nuclear reactor. Based on the measured activities, the 235U content can be deduced by iterative calculations. The aim of this work is to establish a calibration method for estimating the burnup values of the rod-type spent fuels without the need for detailed data on fuel irradiation history

  8. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models

    Directory of Open Access Journals (Sweden)

    Jin eChen

    2012-06-01

    Full Text Available High-throughput data are a double-edged sword; for the benefit of large amount of data, there is an associated cost of noise. To increase reliability and scalability of high-throughput protein interaction data generation, we tested the efficacy of classification to enrich potential protein-protein interactions (pPPIs. We applied this method to identify interactions among Arabidopsis membrane proteins enriched in transporters. We validated our method with multiple retests. Classification improved the quality of the ensuing interaction network and was effective in reducing the search space and increasing true positive rate. The final network of 541 interactions among 239 proteins (of which 179 are transporters is the first protein interaction network enriched in membrane transporters reported for any organism. This network has similar topological attributes to other published protein interaction networks. It also extends and fills gaps in currently available biological networks in plants and allows building a number of hypotheses about processes and mechanisms involving signal-transduction and transport systems.

  9. Method for gesture based modeling

    DEFF Research Database (Denmark)

    2006-01-01

    A computer program based method is described for creating models using gestures. On an input device, such as an electronic whiteboard, a user draws a gesture which is recognized by a computer program and interpreted relative to a predetermined meta-model. Based on the interpretation, an algorithm...... is assigned to the gesture drawn by the user. The executed algorithm may, for example, consist in creating a new model element, modifying an existing model element, or deleting an existing model element....

  10. L-Lactate-selective microbial sensor based on flavocytochrome b2-enriched yeast cells using recombinant and nanotechnology approaches.

    Science.gov (United States)

    Karkovska, Maria; Smutok, Oleh; Stasyuk, Nataliya; Gonchar, Mykhailo

    2015-11-01

    In the recent years, nanotechnology is the most developing branch due to a wide variety of potential applications in biomedical, biotechnological and agriculture fields. The binding nanoparticles with various biological molecules makes them attractive candidates for using in sensor technologies. The particularly actual is obtaining the bionanomembranes based on biocatalytic elements with improved sensing characteristics. The aim of this investigation is to study the properties of microbial L-lactate-selective sensor based on using the recombinant Hansenula polymorpha yeast cells overproducing flavocytochrome b2 (FC b2), as well as additionally enriched by the enzyme bound with gold nanoparticles (FC b2-nAu). Although, the high permeability of the living cells to nanoparticles is being intensively studied (mostly for delivery of drugs), the idea of using both recombinant technology and nanotechnology to increase the amount of the target enzyme in the biosensing layer is really novel. The FC b2-nAu-enriched living and permeabilized yeast cells were used for construction of a bioselective membrane of microbial L-lactate-selective amperometric biosensor. Phenazine methosulphate was served as a free defusing electron transfer mediator which provides effective electron transfer from the reduced enzyme to the electrode surface. It was shown that the output to L-lactate of FC b2-nAu-enriched permeabilized yeast cells is 2.5-fold higher when compared to the control cells. The obtained results confirm that additional enrichment of the recombinant yeast cell by the enzyme bound with nanoparticles improves the analytical parameters of microbial sensor.

  11. Validation of a novel cognitive bias task based on difference in quantity of reinforcement for assessing environmental enrichment.

    Science.gov (United States)

    Keen, Heidi A; Nelson, O Lynne; Robbins, Charles T; Evans, Marc; Shepherdson, David J; Newberry, Ruth C

    2014-05-01

    Cognitive bias tasks purport to assess affective states via responses to ambiguous stimuli. We hypothesized that a novel cognitive bias task based on positive reinforcement using quantity differences would detect changes in affect in captive grizzly bears (Ursus arctos horribilis). We trained bears (n = 8) to respond differently (nose or paw touch) to two stimuli (light or dark gray cue cards), with responses counterbalanced across bears. The two cues signaled a small or large food reward, respectively. Responses to ambiguous probe stimuli (i.e., shades of gray) intermediate to the trained stimuli were classified as either 'optimistic,' appropriate for the larger reward, or 'pessimistic,' appropriate for the smaller reward. In Experiment 1, we explored the contrast in reward size necessary to detect a change in response across probe stimuli (large reward, 3 or 6 apple slices: small reward, 1 slice). We observed a change in response across probe stimuli, with no difference in response between reward-value groups, indicating that a contrast of 3:1 apple slices was sufficient to affect responses. In Experiment 2, we investigated cognitive bias after 2.1 h of exposure to enrichment items varying in attractiveness. Results were unaffected by enrichment type or time spent interacting with enrichments, indicating that the task failed to demonstrate criterion validity for comparing mood following exposure to different enrichment items. However, greater time spent pacing prior to testing was associated with 'optimistic' judgments. The data provide some support for use of cognitive bias tasks based on quantity differences in animal welfare assessments involving captive wildlife. PMID:24045850

  12. Validation of a novel cognitive bias task based on difference in quantity of reinforcement for assessing environmental enrichment.

    Science.gov (United States)

    Keen, Heidi A; Nelson, O Lynne; Robbins, Charles T; Evans, Marc; Shepherdson, David J; Newberry, Ruth C

    2014-05-01

    Cognitive bias tasks purport to assess affective states via responses to ambiguous stimuli. We hypothesized that a novel cognitive bias task based on positive reinforcement using quantity differences would detect changes in affect in captive grizzly bears (Ursus arctos horribilis). We trained bears (n = 8) to respond differently (nose or paw touch) to two stimuli (light or dark gray cue cards), with responses counterbalanced across bears. The two cues signaled a small or large food reward, respectively. Responses to ambiguous probe stimuli (i.e., shades of gray) intermediate to the trained stimuli were classified as either 'optimistic,' appropriate for the larger reward, or 'pessimistic,' appropriate for the smaller reward. In Experiment 1, we explored the contrast in reward size necessary to detect a change in response across probe stimuli (large reward, 3 or 6 apple slices: small reward, 1 slice). We observed a change in response across probe stimuli, with no difference in response between reward-value groups, indicating that a contrast of 3:1 apple slices was sufficient to affect responses. In Experiment 2, we investigated cognitive bias after 2.1 h of exposure to enrichment items varying in attractiveness. Results were unaffected by enrichment type or time spent interacting with enrichments, indicating that the task failed to demonstrate criterion validity for comparing mood following exposure to different enrichment items. However, greater time spent pacing prior to testing was associated with 'optimistic' judgments. The data provide some support for use of cognitive bias tasks based on quantity differences in animal welfare assessments involving captive wildlife.

  13. Uranium enrichment

    International Nuclear Information System (INIS)

    Canada is the world's largest producer and exporter of uranium, most of which is enriched elsewhere for use as fuel in LWRs. The feasibility of a Canadian uranium-enrichment enterprise is therefore a perennial question. Recent developments in uranium-enrichment technology, and their likely impacts on separative work supply and demand, suggest an opportunity window for Canadian entry into this international market. The Canadian opportunity results from three particular impacts of the new technologies: 1) the bulk of the world's uranium-enrichment capacity is in gaseous diffusion plants which, because of their large requirements for electricity (more than 2000 kW·h per SWU), are vulnerable to competition from the new processes; 2) the decline in enrichment costs increases the economic incentive for the use of slightly-enriched uranium (SEU) fuel in CANDU reactors, thus creating a potential Canadian market; and 3) the new processes allow economic operation on a much smaller scale, which drastically reduces the investment required for market entry and is comparable with the potential Canadian SEU requirement. The opportunity is not open-ended. By the end of the century the enrichment supply industry will have adapted to the new processes and long-term customer/supplier relationships will have been established. In order to seize the opportunity, Canada must become a credible supplier during this century

  14. Pruned-enriched Rosenbluth method: Simulations of θ polymers of chain length up to 1 000 000

    Science.gov (United States)

    Grassberger, Peter

    1997-09-01

    We present an algorithm for simulating flexible chain polymers. It combines the Rosenbluth-Rosenbluth method with recursive enrichment. Although it can be applied also in more general situations, it is most efficient for three-dimensional θ polymers on the simple-cubic lattice. There it allows high statistics simulations of chains of length up to N=106. For storage reasons, this is feasable only for polymers in a finite volume. For free θ polymers in infinite volume, we present very high statistics runs with N=10 000. These simulations fully agree with previous simulations made by Hegger and Grassberger [J. Chem. Phys. 102, 6681 (1995)] with a similar but less efficient algorithm, showing that logarithmic corrections to mean field behavior are much stronger than predicted by field theory. But the finite volume simulations show that the density inside a collapsed globule scales with the distance from the θ point as predicted by mean field theory, in contrast to claims in the work mentioned above. In addition to the simple-cubic lattice, we also studied two versions of the bond fluctuation model, but with much shorter chains. Finally, we show that our method can be applied also to off-lattice models, and illustrate this with simulations of a model studied in detail by Freire et al. [Macromolecules 19, 452 (1986) and later work].

  15. On using enriched cover function in the Partition-of-unity method for singular boundary-value problems

    Science.gov (United States)

    Liu, X.; Lee, C. K.; Fan, S. C.

    Amongst the various approaches of `meshless' method, the Partition-of-unity concept married with the traditional finite-element method, namely PUFEM, has emerged to be competitive in solving the boundary-value problems. It inherits most of the advantages from both techniques except that the beauty of being `meshless' vanishes. This paper presents an alternative approach to solve singular boundary-value problems. It follows the basic PUFEM procedures. The salient feature is to enhance the quality of the influence functions, either over one single nodal cover or multi-nodal-covers. In the vicinity of the singularity, available asymptotic analytical solution is employed to enrich the influence function. The beauty of present approach is that it facilitates easy replacement of the influence functions. In other words, it favors the `influence-function refinement' procedure in a bid to search for more accurate solutions. It is analogous to the `p-version refinement' in the traditional finite-element procedures. The present approach can yield very accurate solution without adopting refined meshes. As a result, the quantities around the singularity can be evaluated directly once the nodal values are solved. No additional post-processing is needed. Firstly, the formulation of the present PUFEM approach is described. Subsequently, illustrative examples show the application to three classical singular benchmark problems having various orders of singularity. Results obtained through mesh refinements, single-nodal-cover refinements or multi-nodal-cover refinements are compared.

  16. Efficient enrichment of hepatic cancer stem-like cells from a primary rat HCC model via a density gradient centrifugation-centered method.

    Directory of Open Access Journals (Sweden)

    Wei-hui Liu

    Full Text Available BACKGROUND: Because few definitive markers are available for hepatic cancer stem cells (HCSCs, based on physical rather than immunochemical properties, we applied a novel method to enrich HCSCs. METHODOLOGY: After hepatic tumor cells (HTCs were first isolated from diethylinitrosamine-induced F344 rat HCC model using percoll discontinuous gradient centrifugation (PDGC and purified via differential trypsinization and differential attachment (DTDA, they were separated into four fractions using percoll continuous gradient centrifugation (PCGC and sequentially designated as fractions I-IV (FI-IV. Morphological characteristics, mRNA and protein levels of stem cell markers, proliferative abilities, induced differentiation, in vitro migratory capacities, in vitro chemo-resistant capacities, and in vivo malignant capacities were determined for the cells of each fraction. FINDINGS: As the density of cells increased, 22.18%, 11.62%, 4.73% and 61.47% of primary cultured HTCs were segregated in FI-FIV, respectively. The cells from FIII (density between 1.041 and 1.062 g/ml displayed a higher nuclear-cytoplasmic ratio and fewer organelles and expressed higher levels of stem cell markers (AFP, EpCAM and CD133 than cells from other fractions (P<0.01. Additionally, in vitro, the cells from FIII showed a greater capacity to self-renew, differentiate into mature HTCs, transit across membranes, close scratches, and carry resistance to chemotherapy than did cells from any other fraction; in vivo, injection of only 1×10(4 cells from FIII could generate tumors not only in subcutaneous tissue but also in the livers of nude mice. CONCLUSIONS: Through our novel method, HCSC-like cells were successfully enriched in FIII. This study will greatly contribute to two important areas of biological interest: CSC isolation and HCC therapy.

  17. Potential seaweed-based food ingredients to inhibit lipid oxidation in fish-oil-enriched mayonnaise

    DEFF Research Database (Denmark)

    Honold, Philipp; Jacobsen, Charlotte; Jónsdóttir, Rósa;

    2016-01-01

    and their partitioning between water and octanol. Additionally, the antioxidant activity of the extracts was evaluated in a fish-oil-enriched mayonnaise. Acetone and ethanol were found to extract the highest amount of phenolic compounds and carotenoids. Water used as extraction solvent, extracted some phenolic compounds...... but also higher amount of metals and chlorophyll derivates. It was proposed that extracts with high phenolic content and low iron content, such as the acetone and ethanol extract, would have the highest potential as antioxidants in foods. This was confirmed in the storage trial, where these extracts showed...

  18. Enantiomorphous Periodic Mesoporous Organosilica-Based Nanocomposite Hydrogel Scaffolds for Cell Adhesion and Cell Enrichment.

    Science.gov (United States)

    Kehr, Nermin Seda

    2016-03-14

    The chemical functionalization of nanomaterials with bioactive molecules has been used as an effective tool to mimic extracellular matrix (ECM) and to study the cell-material interaction in tissue engineering applications. In this respect, this study demonstrates the use of enantiomerically functionalized periodic mesoporous organosilicas (PMO) for the generation of new multifunctional 3D nanocomposite (NC) hydrogels to control the affinity of cells to the hydrogel surfaces and so to control the enrichment of cells and simultaneous drug delivery in 3D network. The functionalization of PMO with enantiomers of bioactive molecules, preparation of their nanocomposite hydrogels, and the stereoselective interaction of them with selected cell types are described. The results show that the affinity of cells to the respective NC hydrogel scaffolds is affected by the nature of the biomolecule and its enantiomers, which is more pronounced in serum containing media. The differentiation of enantiomorphous NC hydrogels by cells is used to enrich one cell type from a mixture of two cells. Finally, PMO are utilized as nanocontainers to release two different dye molecules as a proof of principle for multidrug delivery in 3D NC hydrogel scaffolds. PMID:26811946

  19. Application of an efficient strategy based on liquid-liquid extraction, high-speed counter-current chromatography, and preparative HPLC for the rapid enrichment, separation, and purification of four anthraquinones from Rheum tanguticum.

    Science.gov (United States)

    Chen, Tao; Liu, Yongling; Zou, Denglang; Chen, Chen; You, Jinmao; Zhou, Guoying; Sun, Jing; Li, Yulin

    2014-01-01

    This study presents an efficient strategy based on liquid-liquid extraction, high-speed counter-current chromatography, and preparative HPLC for the rapid enrichment, separation, and purification of four anthraquinones from Rheum tanguticum. A new solvent system composed of petroleum ether/ethyl acetate/water (4:2:1, v/v/v) was developed for the liquid-liquid extraction of the crude extract from R. tanguticum. As a result, emodin, aloe-emodin, physcion, and chrysophanol were greatly enriched in the organic layer. In addition, an efficient method was successfully established to separate and purify the above anthraquinones by high-speed counter-current chromatography and preparative HPLC. This study supplies a new alternative method for the rapid enrichment, separation, and purification of emodin, aloe-emodin, physcione, and chrysophanol.

  20. Classification method based on KCCA

    Science.gov (United States)

    Wang, Zhanqing; Zhang, Guilin; Zhao, Guangzhou

    2007-11-01

    Nonlinear CCA extends the linear CCA in that it operates in the kernel space and thus implies the nonlinear combinations in the original space. This paper presents a classification method based on the kernel canonical correlation analysis (KCCA). We introduce the probabilistic label vectors (PLV) for a give pattern which extend the conventional concept of class label, and investigate the correlation between feature variables and PLV variables. A PLV predictor is presented based on KCCA, and then classification is performed on the predicted PLV. We formulate a frame for classification by integrating class information through PLV. Experimental results on Iris data set classification and facial expression recognition show the efficiencies of the proposed method.

  1. Full waveform inversion based on scattering angle enrichment with application to real dataset

    KAUST Repository

    Wu, Zedong

    2015-08-19

    Reflected waveform inversion (RWI) provides a method to reduce the nonlinearity of the standard full waveform inversion (FWI). However, the drawback of the existing RWI methods is inability to utilize diving waves and the extra sensitivity to the migrated image. We propose a combined FWI and RWI optimization problem through dividing the velocity into the background and perturbed components. We optimize both the background and perturbed components, as independent parameters. The new objective function is quadratic with respect to the perturbed component, which will reduce the nonlinearity of the optimization problem. Solving this optimization provides a true amplitude image and utilizes the diving waves to update the velocity of the shallow parts. To insure a proper wavenumber continuation, we use an efficient scattering angle filter to direct the inversion at the early stages to direct energy corresponding to large (smooth velocity) scattering angles to the background velocity update and the small (high wavenumber) scattering angles to the perturbed velocity update. This efficient implementation of the filter is fast and requires less memory than the conventional approach based on extended images. Thus, the new FWI procedure updates the background velocity mainly along the wavepath for both diving and reflected waves in the initial stages. At the same time, it updates the perturbation with mainly reflections (filtering out the diving waves). To demonstrate the capability of this method, we apply it to a real 2D marine dataset.

  2. New method for GC/FID and GC-C-IRMS Analysis of plasma free fatty acid concentration and isotopic enrichment

    OpenAIRE

    Kangani, Cyrous O.; Kelley, David E.; DeLany, James P.

    2008-01-01

    A simple, direct and accurate method for the determination of concentration and enrichment of free fatty acids in human plasma was developed. The validation and comparison to a conventional method are reported. Three amide derivatives, dimethyl, diethyl and pyrrolidide, were investigated in order to achieve optimal resolution of the individual fatty acids. This method involves the use of dimethylamine/Deoxo-Fluor to derivatize plasma free fatty acids to their dimethylamides. This derivatizati...

  3. New method for GC/FID and GC-C-IRMS analysis of plasma free fatty acid concentration and isotopic enrichment.

    Science.gov (United States)

    Kangani, Cyrous O; Kelley, David E; Delany, James P

    2008-09-15

    A simple, direct and accurate method for the determination of concentration and enrichment of free fatty acids (FFAs) in human plasma was developed. The validation and comparison to a conventional method are reported. Three amide derivatives, dimethyl, diethyl and pyrrolidide, were investigated in order to achieve optimal resolution of the individual fatty acids. This method involves the use of dimethylamine/Deoxo-Fluor to derivatize plasma free fatty acids to their dimethylamides. This derivatization method is very mild and efficient, and is selective only towards FFAs so that no separation from a total lipid extract is required. The direct method gave lower concentrations for palmitic acid and stearic acid and increased concentrations for oleic acid and linoleic acid in plasma as compared to methyl ester derivative after thin-layer chromatography. The [(13)C]palmitate isotope enrichment measured using direct method was significantly higher than that observed with the BF(3)/MeOH-TLC method. The present method provided accurate and precise measures of concentration as well as enrichment when analyzed with gas chromatography combustion-isotope ratio-mass spectrometry. PMID:18757250

  4. Tree-based ranking methods

    OpenAIRE

    Clémençon, Stéphan; Vayatis, Nicolas

    2008-01-01

    The paper investigates how recursive partitioning methods can be adapted to the bipartite ranking problem. In ranking, the pursued goal is global: based on past data, define an order on the whole input space X, so that positive instances take up the top ranks with maximum probability. The most natural way to order all instances consists of projecting the input data onto the real line through a real-valued scoring function s and use the natural order on R. The accuracy of the ordering induced ...

  5. BIOTECHNOLOGY AS A USEFUL TOOL FOR NUTRITIONAL IMPROVEMENT OF CEREAL-BASED MATERIALS ENRICHED WITH POLYUNSATURATED FATTY ACIDS AND PIGMENTS

    Directory of Open Access Journals (Sweden)

    M. Čertík

    2008-09-01

    Full Text Available Cereals represent a major food supply for humanity. Although these sources are rich in proteins and carbohydrates, many of them are deficient in several essential nutrients, such as polyunsaturated fatty acids (PUFAs and carotenoid pigments. One possible approach how to enhance the content of PUFAs or carotenoids in cereal diet is based on biotechnological transformation of cereal materials by solid state fermentations. This technique is powerful tool for effective valorisation of these resources to various types of value-added bioproducts with demanded properties and functions. Selected filamentous Mucorales fungi were applied for conversion of numerous agroindustrial substrates to bioproducts enriched with PUFAs, such as gamma-linolenic acid (GLA, dihomo-gamma-linolenic acid (DGLA, arachidonic acid (AA and eicosapentaenoic acid (EPA. On the other hand, a range of yeast species utilizing agroindustrial substrates were employed for formation of carotenoids, such as β-carotene, torulene, torularhodine and astaxanthin. Such naturally prepared cereal based bioproducts enriched with either PUFAs or carotenoid pigments may be used as an inexpensive food and feed supplement. The work was supported by grant VEGA No. 1/0747/08 from the Grant Agency of Ministry of Education, Slovak Republic.

  6. New Procedure to Obtain Polyphenol-Enriched Grapes Based on the Use of Chemical Elicitors.

    Science.gov (United States)

    Flores, Gema; Del Castillo, Maria Luisa Ruiz

    2016-09-01

    The effect of the postharvest treatment of methyl jasmonate enantiomers in conjunction with ethanol on bioformation of resveratrol and quercetin glycosides in grapes was evaluated. The antioxidant activity of treated grape extracts as compared with untreated extracts was also assayed. Exogenous (-)-methyl jasmonate in combination with ethanol induced a significant increase in the levels of resveratrol (from 27 to 39 μg g(-1)), quercetin-3-O-glucoside (from 59 to 136 μg g(-1)), quercetin-3-O-galactoside (from 398 to 807 μg g(-1)) and quercetin-3-O-rutinoside (from 23 to 43 μg g(-1)). (+)-Methyl jasmonate with ethanol also resulted in increase of quercetin-3-O-glucoside and quercetin-3-O-rutinoside. However, no (+)-methyl jasmonate effect was observed for resveratrol and quercetin-3-O-galactoside. Both (-)- and (+)-methyl jasmonate treatments provided with extracts with higher antioxidant activity. From the results found in the present work postharvest treatment with (-)-methyl jasmonate in conjunction with ethanol is proposed as a mean to obtain polyphenol-enriched grape extracts with improved antioxidant properties. The procedure here developed is proposed as a mean to obtain functional grapes. Extracts obtained from grapes treated with (-)-methyl jasmonate with ethanol can be particularly useful for industry due to their high antioxidant capacity.

  7. Job Enrichment

    Science.gov (United States)

    Sanders, Rick

    1970-01-01

    Job enrichment means giving people more decision-making power, more responsibility, more grasp of the totality of the job, and a sense of their own importance in the company. This article presents evidence of the successful working of this approach (Donnelly Mirrors), and the lack of success with an opposing approach (General Motors). (NL)

  8. DISPLACEMENT BASED SEISMIC DESIGN METHODS.

    Energy Technology Data Exchange (ETDEWEB)

    HOFMAYER,C.MILLER,C.WANG,Y.COSTELLO,J.

    2003-07-15

    A research effort was undertaken to determine the need for any changes to USNRC's seismic regulatory practice to reflect the move, in the earthquake engineering community, toward using expected displacement rather than force (or stress) as the basis for assessing design adequacy. The research explored the extent to which displacement based seismic design methods, such as given in FEMA 273, could be useful for reviewing nuclear power stations. Two structures common to nuclear power plants were chosen to compare the results of the analysis models used. The first structure is a four-story frame structure with shear walls providing the primary lateral load system, referred herein as the shear wall model. The second structure is the turbine building of the Diablo Canyon nuclear power plant. The models were analyzed using both displacement based (pushover) analysis and nonlinear dynamic analysis. In addition, for the shear wall model an elastic analysis with ductility factors applied was also performed. The objectives of the work were to compare the results between the analyses, and to develop insights regarding the work that would be needed before the displacement based analysis methodology could be considered applicable to facilities licensed by the NRC. A summary of the research results, which were published in NUREGICR-6719 in July 2001, is presented in this paper.

  9. Enrichment of polyphenol contents and antioxidant activities of Irish brown macroalgae using food-friendly techniques based on polarity and molecular size.

    Science.gov (United States)

    Tierney, Michelle S; Smyth, Thomas J; Rai, Dilip K; Soler-Vila, Anna; Croft, Anna K; Brunton, Nigel

    2013-08-15

    An efficient, food-friendly process for the enrichment of macroalgal phlorotannins from solid-liquid extracts (SLE) of three brown macroalgae, namely Fucus spiralis Linnaeus, Pelvetia canaliculata (Linnaeus) Decaisne & Thuret and Ascophyllum nodosum (Linnaeus) Le Jolis, has been demonstrated. The initial utilisation of molecular weight cut-off (MWCO) dialysis generated fractions of low molecular weight (LMW) (100 kDa) from cold water, hot water and aqueous ethanolic SLE extracts. An enhancement of the total phenolic content (TPC), radical scavenging abilities (RSA) and ferric reducing antioxidant power (FRAP) in the HMW fractions of 3.5-100 kDa and/or >100 kDa from the cold water and aqueous ethanolic extracts was observed. The initial weak TPC, RSA and FRAP observed in the LMW fractions relative to the HMW fractions were substantially enhanced following a reverse-phase flash chromatography fractionation method. Quadrupole time-of-flight mass spectrometry (Q-Tof-MS) suggests that phlorotannins of varying degrees of phloroglucinol polymerisation are present in LMW fractions of the three brown macroalgal species. The development of a food-friendly process for the extraction and enrichment of phlorotannins from Irish macroalgae is vital to facilitate the use of this valuable resource in future developments of macroalgal-based functional foods. PMID:23561170

  10. SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data

    DEFF Research Database (Denmark)

    Poulsen, Line Dahl; Kielpinski, Lukasz Jan; Salama, Sofie R;

    2015-01-01

    Selective 2' Hydroxyl Acylation analyzed by Primer Extension (SHAPE) is an accurate method for probing of RNA secondary structure. In existing SHAPE methods, the SHAPE probing signal is normalized to a no-reagent control to correct for the background caused by premature termination of the reverse...

  11. A history-based method to estimate animal preference

    Science.gov (United States)

    Maia, Caroline Marques; Volpato, Gilson Luiz

    2016-01-01

    Giving animals their preferred items (e.g., environmental enrichment) has been suggested as a method to improve animal welfare, thus raising the question of how to determine what animals want. Most studies have employed choice tests for detecting animal preferences. However, whether choice tests represent animal preferences remains a matter of controversy. Here, we present a history-based method to analyse data from individual choice tests to discriminate between preferred and non-preferred items. This method differentially weighs choices from older and recent tests performed over time. Accordingly, we provide both a preference index that identifies preferred items contrasted with non-preferred items in successive multiple-choice tests and methods to detect the strength of animal preferences for each item. We achieved this goal by investigating colour choices in the Nile tilapia fish species. PMID:27350213

  12. Application of the A/E pulse shape discrimination method to first Ge-76 enriched BEGe detectors operated in GERDA

    Energy Technology Data Exchange (ETDEWEB)

    Lazzaro, Andrea; Agostini, Matteo; Budjas, Dusan; Schoenert, Stefan [Physik-Department E15, Technische Universitaet Muenchen (Germany); Collaboration: GERDA-Collaboration

    2013-07-01

    In 2013 the Gerda experiment will be upgraded to its second phase with more than double of the current {sup 76}Ge mass. The additional diodes are custom made Broad Energy Germanium (BEGe) detectors. This design has been chosen to enhance the pulse shape discrimination (PSD) capability, with respect to the Phase I coaxial detectors. The goal of Phase II is to improve by one order of magnitude the current background index; the PSD will bring a major contribution to this result. Since summer 2012 the first set of five enriched BEGe detectors are operated in Gerda Phase I. This offers us the possibility to test the PSD performances and the signal analysis in an environment as close as possible to the Gerda Phase II configuration. In this talk I present the A/E analysis, the calibration of the cut parameters and the results in terms of background reduction for the data taken with these enriched BEGe.

  13. Application of the A/E pulse shape discrimination method to first Ge-76 enriched BEGe detectors operated in GERDA

    International Nuclear Information System (INIS)

    In 2013 the Gerda experiment will be upgraded to its second phase with more than double of the current 76Ge mass. The additional diodes are custom made Broad Energy Germanium (BEGe) detectors. This design has been chosen to enhance the pulse shape discrimination (PSD) capability, with respect to the Phase I coaxial detectors. The goal of Phase II is to improve by one order of magnitude the current background index; the PSD will bring a major contribution to this result. Since summer 2012 the first set of five enriched BEGe detectors are operated in Gerda Phase I. This offers us the possibility to test the PSD performances and the signal analysis in an environment as close as possible to the Gerda Phase II configuration. In this talk I present the A/E analysis, the calibration of the cut parameters and the results in terms of background reduction for the data taken with these enriched BEGe.

  14. Universal screening test based on analysis of circulating organ-enriched microRNAs: a novel approach to diagnostic screening.

    Science.gov (United States)

    Sheinerman, Kira S; Umansky, Samuil

    2015-03-01

    Early disease detection leads to more effective and cost-efficient treatment. It is especially important for cancer and neurodegenerative diseases, because progression of these pathologies leads to significant and frequently irreversible changes in underlying pathophysiological processes. At the same time, the development of specific screening tests for detection of each of the hundreds of human pathologies in asymptomatic stage may be impractical. Here, we discuss a recently proposed concept: the development of minimally invasive Universal Screening Test (UST) based on analysis of organ-enriched microRNAs in plasma and other bodily fluids. The UST is designed to detect the presence of a pathology in particular organ systems, organs, tissues or cell types without diagnosing a specific disease. Once the pathology is detected, more specific, and if necessary invasive and expensive, tests can be administered to precisely define the nature of the disease. Here, we discuss recent studies and analyze the data supporting the UST approach.

  15. An impact of an enriched visual - verbal information remittance, regarding crawl style swimming, learning and teaching effects basing on AWF students in Cracow

    Directory of Open Access Journals (Sweden)

    Kaca M.

    2012-02-01

    Full Text Available The main aim of this study was to define an enriched impact, visual -verbal information remittance in a swimming teaching process affecting free style progression. Research was done in academic year 2007/2008 and involved 158 students from AWF in Cracow. The main exploratory method was a natural pedagogic experiment. Experimental factor was a teaching method relied on an enriched visual - verbal information remittance. Acquired research scores reveal that the apply teaching method focused on the auto observation and self-assessment of one's own skills (with the use of parallel display, improve the effectiveness of teaching and learning crawl technique process.

  16. A method to assess relative preference for training and environmental enrichment in captive wolves (Canis lupus and Canis lupus arctos).

    Science.gov (United States)

    Dorey, Nicole R; Mehrkam, Lindsay R; Tacey, Jay

    2015-11-01

    It is currently debated as to whether or not positive reinforcement training is enriching to captive animals. Although both husbandry training and environmental enrichment (EE) have been found to benefit animal welfare in captivity, to date, no systematic investigation has compared an animal's preference for performing a trained behavior to engaging freely with a stimuli provided as EE. In the current paper, we used four captive wolves to (1) test the efficacy of a paired-stimulus preference assessment to determine preference for engaging in a trained behavior as a choice; and to (2) use a paired-stimulus preference assessment to determine whether or not individuals prefer to engage in a previously trained behavior versus a previously encountered EE stimuli. Of the four subjects tested, visual inspection of the graphs revealed that two of the subjects preferred trained behavior stimuli and two of the subjects preferred EE stimuli; only one of the wolves had a statically higher preference for an EE stimulus over a trained behavior. We believe that letting the animals choose between these two events is the first step in answering the question of whether or not is training enriching, however more research needs to be done and suggestions for future research is discussed. PMID:26274933

  17. SciMiner: web-based literature mining tool for target identification and functional enrichment analysis

    OpenAIRE

    Hur, Junguk; Schuyler, Adam D.; States, David J.; Eva L Feldman

    2009-01-01

    Summary:SciMiner is a web-based literature mining and functional analysis tool that identifies genes and proteins using a context specific analysis of MEDLINE abstracts and full texts. SciMiner accepts a free text query (PubMed Entrez search) or a list of PubMed identifiers as input. SciMiner uses both regular expression patterns and dictionaries of gene symbols and names compiled from multiple sources. Ambiguous acronyms are resolved by a scoring scheme based on the co-occurrence of acronyms...

  18. A Walk-based Semantically Enriched Tree Kernel Over Distributed Word Representations

    DEFF Research Database (Denmark)

    Srivastava, Shashank; Hovy, Dirk

    2013-01-01

    We propose a walk-based graph kernel that generalizes the notion of tree-kernels to continuous spaces. Our proposed approach subsumes a general framework for word-similarity, and in particular, provides a flexible way to incorporate distributed representations. Using vector representations, such ...... diverse NLP tasks, showing state-of-the-art results....

  19. Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment

    Directory of Open Access Journals (Sweden)

    Hunt Ela

    2009-05-01

    Full Text Available Abstract Background TreeBASE, the only data repository for phylogenetic studies, is not being used effectively since it does not meet the taxonomic data retrieval requirements of the systematics community. We show, through an examination of the queries performed on TreeBASE, that data retrieval using taxon names is unsatisfactory. Results We report on a new wrapper supporting taxon queries on TreeBASE by utilising a Taxonomy and Classification Database (TCl-Db we created. TCl-Db holds merged and consolidated taxonomic names from multiple data sources and can be used to translate hierarchical, vernacular and synonym queries into specific query terms in TreeBASE. The query expansion supported by TCl-Db shows very significant information retrieval quality improvement. The wrapper can be accessed at the URL http://spira.zoology.gla.ac.uk/app/tbasewrapper.php The methodology we developed is scalable and can be applied to new data, as those become available in the future. Conclusion Significantly improved data retrieval quality is shown for all queries, and additional flexibility is achieved via user-driven taxonomy selection.

  20. Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat

    Energy Technology Data Exchange (ETDEWEB)

    Babauta, Jerome T. [Washington State Univ., Pullman, WA (United States); Atci, Erhan [Washington State Univ., Pullman, WA (United States); Ha, Phuc T. [Washington State Univ., Pullman, WA (United States); Lindemann, Stephen R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Ewing, Timothy [Washington State Univ., Pullman, WA (United States); Call, Douglas R. [Washington State Univ., Pullman, WA (United States); Fredrickson, James K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Beyenal, Haluk [Washington State Univ., Pullman, WA (United States)

    2014-01-01

    Phototrophic microbial mats frequently exhibit sharp, light-dependent redox gradients that regulate microbial respiration on specific electron acceptors as a function of depth. In this work, a benthic phototrophic microbial mat from Hot Lake, a hypersaline, epsomitic lake located near Oroville in north-central Washington, was used to develop a microscale electrochemical method to study local electron transfer processes within the mat. To characterize the physicochemical variables influencing electron transfer, we initially quantified redox potential, pH, and dissolved oxygen gradients by depth in the mat under photic and aphotic conditions. We further demonstrated that power output of a mat fuel cell was light-dependent. To study local electron transfer processes, we deployed a microscale electrode (microelectrode) with tip size ~20 μm. To enrich a subset of microorganisms capable of interacting with the microelectrode, we anodically polarized the microelectrode at depth in the mat. Subsequently, to characterize the microelectrode- associated community and compare it to the neighboring mat community, we performed amplicon sequencing of the V1-V3 region of the 16S gene. Differences in Bray-Curtis beta diversity, illustrated by large changes in relative abundance at the phylum level, suggested successful enrichment of specific mat community members on the microelectrode surface. The microelectrode-associated community exhibited substantially reduced alpha diversity and elevated relative abundances of Prosthecochloris, Loktanella, Catellibacterium, other unclassified members of Rhodobacteraceae, Thiomicrospira, and Limnobacter, compared with the community at an equivalent depth in the mat. Our results suggest that local electron transfer to an anodically polarized microelectrode selected for a specific microbial population, with substantially more abundance and diversity of sulfur-oxidizing phylotypes compared with the neighboring mat community.

  1. Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat

    Directory of Open Access Journals (Sweden)

    Jerome eBabauta

    2014-01-01

    Full Text Available Phototrophic microbial mats frequently exhibit sharp, light-dependent redox gradients that regulate microbial respiration on specific electron acceptors as a function of depth. In this work, a benthic phototrophic microbial mat from Hot Lake, a hypersaline, epsomitic lake located near Oroville in north-central Washington, was used to develop a microscale electrochemical method to study local electron transfer processes within the mat. To characterize the physicochemical variables influencing electron transfer, we initially quantified redox potential, pH and dissolved oxygen gradients by depth in the mat under photic and aphotic conditions. We further demonstrated that power output of a mat fuel cell was light-dependent. To study local electron transfer processes, we deployed a microscale electrode (microelectrode with tip size ~20 µm. To enrich a subset of microorganisms capable of interacting with the microelectrode, we anodically polarized the microelectrode in the mat. Subsequently, to characterize the microelectrode-associated community and compare it to the neighboring mat community, we performed amplicon sequencing of the V1-V3 region of the 16S gene. Differences in Bray-Curtis beta diversity, illustrated by large changes in relative abundance at the phylum level, suggested successful enrichment of specific mat community members on the microelectrode surface. The microelectrode-associated community exhibited substantially reduced alpha diversity and elevated relative abundances of Prosthecochloris, Loktanella, Catellibacterium, other unclassified members of Rhodobacteraceae, Thiomicrospira, and Limnobacter, compared with the community at an equivalent depth in the mat. Our results suggest that local electron transfer to an anodically polarized microelectrode selected for a specific microbial population, with substantially more abundance and diversity of sulfur-oxidizing phylotypes compared with the neighboring mat community.

  2. SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment

    OpenAIRE

    Lee, Jaehoon; Ahn, Soyeon; Oh, Sohee; Weir, Bruce; Park, Taesung

    2011-01-01

    Background The current genome-wide association (GWA) analysis mainly focuses on the single genetic variant, which may not reveal some the genetic variants that have small individual effects but large joint effects. Considering the multiple SNPs jointly in Genome-wide association (GWA) analysis can increase power. When multiple SNPs are jointly considered, the corresponding SNP-level association measures are likely to be correlated due to the linkage disequilibrium (LD) among SNPs. Methods We ...

  3. Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry

    DEFF Research Database (Denmark)

    Calvano, Cosima D; Zambonin, Carlo G; Jensen, Ole Nørregaard

    2008-01-01

    Protein glycosylation is a common post-translational modification that is involved in many biological processes, including cell adhesion, protein-protein and receptor-ligand interactions. The glycoproteome constitutes a source for identification of disease biomarkers since altered protein...... of 63 glycosylation sites in 38 proteins were identified by both methods, demonstrating distinct differences and complementarity. Serial application of custom-made microcolumns of mixed, immobilized lectins proved efficient for recovery and analysis of glycopeptides from serum samples of breast cancer...

  4. Data base for a CANDU-PHW operating on a once-through, slightly enriched uranium cycle (AECL-6594)

    International Nuclear Information System (INIS)

    This report, prepared for INFCE, gives data for an extrapolated 1000 MW(e) CANDU-PHW design operating on a once-through fuel cycle with a feed fuel of slightly enriched uranium - 1.2 weight % U-235 in uranium. The effects of varying fuel enrichment, maximum channel power, and economic parameters are also discussed

  5. Data base for a CANDU-PHW operating on a once-through, slightly enriched uranium cycle

    International Nuclear Information System (INIS)

    This report, prepared for INFCE, gives data for an extrapolated 1000 MW(e) CANDU-PHW design operating on a once-through fuel cycle with a feed fuel of slightly enriched uranium: 1.2 weight percent U-235 in uranium. The effects of varying fuel enrichment, maximum channel power, and economic parameters are also discussed. (author)

  6. Comparison of iridium- and ruthenium-based, Pt-surface-enriched, nanosize catalysts for the oxygen-reduction reaction

    Science.gov (United States)

    Kaplan, D.; Goor, M.; Alon, M.; Tsizin, S.; Burstein, L.; Rosenberg, Y.; Popov, I.; Peled, E.

    2016-02-01

    Pt-surface-enriched nanosize catalysts (Pt-SENS catalysts) with ruthenium and iridium cores, supported on XC72, were synthesized and characterized. The structure and composition of the catalysts are determined by Energy-Dispersive X-ray Spectroscopy (EDS), X-ray Photoelectron Spectroscopy (XPS), Scanning Transmission Electron Microscopy (STEM) and X-Ray Diffraction (XRD). Electrochemical characterization tests, including oxygen-reduction-catalysis activity and durability studies of catalysts are performed with the use of cyclic-voltammetry and rotating-disk-electrode (RDE) techniques at room temperature. The ORR activity of the homemade catalysts is also compared to ORR activity of commercial 50%Pt/C catalyst. It is determined that the Ir-based catalyst (Pt/Ir/XC72) shows higher ORR activity in terms of A g-1 of Pt (at 0.85 V vs. RHE) than the Ru-based catalyst (Pt/Ru/XC72) and the commercial 50%Pt/C. The Ru-based catalyst shows similar ORR activity in terms of A g-1 of Pt, to that of the commercial 50%Pt/C, but with much lower durability.

  7. A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae

    Directory of Open Access Journals (Sweden)

    Jennifer R. Mandel

    2014-02-01

    Full Text Available Premise of the study: The Compositae (Asteraceae are a large and diverse family of plants, and the most comprehensive phylogeny to date is a meta-tree based on 10 chloroplast loci that has several major unresolved nodes. We describe the development of an approach that enables the rapid sequencing of large numbers of orthologous nuclear loci to facilitate efficient phylogenomic analyses. Methods and Results: We designed a set of sequence capture probes that target conserved orthologous sequences in the Compositae. We also developed a bioinformatic and phylogenetic workflow for processing and analyzing the resulting data. Application of our approach to 15 species from across the Compositae resulted in the production of phylogenetically informative sequence data from 763 loci and the successful reconstruction of known phylogenetic relationships across the family. Conclusions: These methods should be of great use to members of the broader Compositae community, and the general approach should also be of use to researchers studying other families.

  8. An N-sulfanylethylanilide-based traceable linker for enrichment and selective labelling of target proteins.

    Science.gov (United States)

    Morisaki, Takuya; Denda, Masaya; Yamamoto, Jun; Tsuji, Daisuke; Inokuma, Tsubasa; Itoh, Kohji; Shigenaga, Akira; Otaka, Akira

    2016-05-25

    An N-sulfanylethylanilide-based traceable linker, developed to facilitate identification of target proteins of bioactive compounds, was introduced into an alkynylated target protein. Subsequent adsorption onto streptavidin beads allowed it to be treated with a cysteine-fluorophore conjugate in the presence of phosphate. This induced the N-S acyl transfer reaction of the N-sulfanylethylanilide unit. The subsequent native chemical ligation of the fluorophore resulted in cleavage of the linker for target elution and fluorescence labelling of the target, allowing it to be distinguished from non-target proteins. PMID:27146590

  9. Functional soy food based on flaxseed and quinoa and enriched with iron and Vitamin B12

    Directory of Open Access Journals (Sweden)

    Ana Carolina Braga

    2015-07-01

    Full Text Available A diet rich in food derived from vegetables reduces the risk of developing chronic and degenerative diseases and provides the essential nutrients for human consumption. Besides soybean, other foods of vegetal origin have been studied and incorporated in healthy formulations, such as quinoa and linseed. Current assay comprises a sensorial analysis of a product of vegetable origin, a soy product, based on quinoa and flaxseed, considered to be functional food, for its organoleptic characteristics acceptable by a sample group of 80 individuals. Several tests were conducted to reach an adequate formulation for the product, characterized by 11.1 g of protein content, 9.6 g of dietary fiber and low levels of lipids, since it had only 1.4 g. The resulting product revealed adequate microbiological conditions when subjected to microbiological analysis (coliforms at 45ºC; coliforms at 35ºC and Staphylococcus aureus. According to scores in the sensory analysis, it may be assumed that the product was accepted by the sample group. The favorable results indicate the possibility of consumers adhering to a processed diet rich in food derived from vegetables, with functional properties, to replace animal-derived food which is rich in saturated fats and low in fiber.

  10. Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products.

    Science.gov (United States)

    Podeur, Gaëtan; Dalgaard, Paw; Leroi, Francoise; Prévost, Hervé; Emborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Pilet, Marie-France

    2015-06-16

    Histamine fish poisoning is common and due to toxic concentrations of histamine often produced by Gram-negative bacteria in fin-fish products with a high content of the free amino acid histidine. The genus Morganella includes two species previously reported to cause incidents of histamine fish poisoning. Morganella morganii and Morganella psychrotolerans are both strong producer of histamine. However, little is known about the occurrence and critical stages for fish contamination with these bacteria. To elucidate contamination routes of Morganella, specific real-time quantitative PCR (RTi qPCR) methods for quantification of M. morganii and M. psychrotolerans have been developed. Selective primers amplified a 110 bp region of the vasD gene for M. psychrotolerans and a 171 bp region of the galactokinase gene for M. morganii. These primer-sets showed high specificity as demonstrated by using purified DNA from 23 other histamine producing bacteria and 26 isolates with no or limited histamine production. The efficiency of the qPCR reactions on artificially contaminated fish samples were 100.8% and 96.3% respectively. The limit of quantification (LOQ) without enrichment was 4 log CFU/g. A quantitative enrichment step with a selective medium was included and improved the sensitivity of the methods to a LOQ of below 50 CFU/g in seafood. RTi qPCR methods with or without enrichment were evaluated for enumeration of Morganella species in naturally contaminated fresh fish and lightly preserved seafood from Denmark. These new methods will contribute to a better understanding of the occurrence and histamine production by Morganella species in fish products, information that is essential to reduce the unacceptably high frequency of histamine fish poisoning.

  11. History and Nature of Science enriched Problem-Based Learning on the origins of biodiversity and of continents and oceans

    Directory of Open Access Journals (Sweden)

    Cristina Sousa

    2014-09-01

    Full Text Available The episode of the History of Science (HOS on the theory of continental drift proposed by Alfred Wegener has been considered an excellent example for teaching students aspects of Nature of Science (NOS and the relation of Science with social and tecnological contexts. We implemented a NOS and HOS-enriched Problem-Based Learning environment at the middle (year 7 of the Portuguese National Curriculum and secondary level (year 10 for teaching the origins of biodiversity and of continents and oceans (mobilism.  The goal of providing detailed implementation practices is to adress the lack of how to in Problem-based learning (PBL implementation in classrooms for 12 to 16 year old students and is the first practical example of implementation using this episode of HOS for teaching geological mobilism integrated with evolution. Therefore, in this study, we provide specific suggestions for supporting teachers’ classroom efforts in implementing PBL, such as scaffolding. The ill-problem presented to students, without a single correct answer, was based on the phylogeny of extant and extinct ratite birds, described by Charles Darwin and the present geographical distribution. The evaluation of the students was focused on the chain of reasoning employed, and we performed a comparisation analysis of the problem’s solution presented by the students of both classes regarding the explanation of the phylogeny of ratites based on geological mobilism. We observed an overall improvement (25-77% of the percentages of students pre- and post-instruction adequate answers; therefore our PBL strategy was efficient.

  12. COMPANY VALUATION METHODS BASED ON PATRIMONY

    Directory of Open Access Journals (Sweden)

    SUCIU GHEORGHE

    2013-02-01

    Full Text Available The methods used for the company valuation can be divided into 3 main groups: methods based on patrimony,methods based on financial performance, methods based both on patrimony and on performance. The companyvaluation methods based on patrimony are implemented taking into account the balance sheet or the financialstatement. The financial statement refers to that type of balance in which the assets are arranged according to liquidity,and the liabilities according to their financial maturity date. The patrimonial methods are based on the principle thatthe value of the company equals that of the patrimony it owns. From a legal point of view, the patrimony refers to allthe rights and obligations of a company. The valuation of companies based on their financial performance can be donein 3 ways: the return value, the yield value, the present value of the cash flows. The mixed methods depend both onpatrimony and on financial performance or can make use of other methods.

  13. A Mimic of the Tumor Microenvironment: A Simple Method for Generating Enriched Cell Populations and Investigating Intercellular Communication.

    Science.gov (United States)

    Domogauer, Jason D; de Toledo, Sonia M; Azzam, Edouard I

    2016-09-20

    Understanding the early heterotypic interactions between cancer cells and the surrounding non-cancerous stroma is important in elucidating the events leading to stromal activation and establishment of the tumor microenvironment (TME). Several in vitro and in vivo models of the TME have been developed; however, in general these models do not readily permit isolation of individual cell populations, under non-perturbing conditions, for further study. To circumvent this difficulty, we have employed an in vitro TME model using a cell growth substrate consisting of a permeable microporous membrane insert that permits simple generation of highly enriched cell populations grown intimately, yet separately, on either side of the insert's membrane for extended co-culture times. Through use of this model, we are capable of generating greatly enriched cancer-associated fibroblast (CAF) populations from normal diploid human fibroblasts following co-culture (120 hr) with highly metastatic human breast carcinoma cells, without the use of fluorescent tagging and/or cell sorting. Additionally, by modulating the pore-size of the insert, we can control for the mode of intercellular communication (e.g., gap-junction communication, secreted factors) between the two heterotypic cell populations, which permits investigation of the mechanisms underlying the development of the TME, including the role of gap-junction permeability. This model serves as a valuable tool in enhancing our understanding of the initial events leading to cancer-stroma initiation, the early evolution of the TME, and the modulating effect of the stroma on the responses of cancer cells to therapeutic agents.

  14. A Mimic of the Tumor Microenvironment: A Simple Method for Generating Enriched Cell Populations and Investigating Intercellular Communication.

    Science.gov (United States)

    Domogauer, Jason D; de Toledo, Sonia M; Azzam, Edouard I

    2016-01-01

    Understanding the early heterotypic interactions between cancer cells and the surrounding non-cancerous stroma is important in elucidating the events leading to stromal activation and establishment of the tumor microenvironment (TME). Several in vitro and in vivo models of the TME have been developed; however, in general these models do not readily permit isolation of individual cell populations, under non-perturbing conditions, for further study. To circumvent this difficulty, we have employed an in vitro TME model using a cell growth substrate consisting of a permeable microporous membrane insert that permits simple generation of highly enriched cell populations grown intimately, yet separately, on either side of the insert's membrane for extended co-culture times. Through use of this model, we are capable of generating greatly enriched cancer-associated fibroblast (CAF) populations from normal diploid human fibroblasts following co-culture (120 hr) with highly metastatic human breast carcinoma cells, without the use of fluorescent tagging and/or cell sorting. Additionally, by modulating the pore-size of the insert, we can control for the mode of intercellular communication (e.g., gap-junction communication, secreted factors) between the two heterotypic cell populations, which permits investigation of the mechanisms underlying the development of the TME, including the role of gap-junction permeability. This model serves as a valuable tool in enhancing our understanding of the initial events leading to cancer-stroma initiation, the early evolution of the TME, and the modulating effect of the stroma on the responses of cancer cells to therapeutic agents. PMID:27684198

  15. Determination of Trace Amounts of Gold in Soil Sample Using Plastic Foam Enrichment-ICP-MS Method%泡塑富集ICP-MS测定土壤中痕量金

    Institute of Scientific and Technical Information of China (English)

    余波

    2008-01-01

    The aim of this study is to determine the trace amount of gold in soil sample using plastic foam enrichment-ICP-MS method. The national standard reference materials including GAu-2,GAu-10,GAu-11 and GAu-13 were used for parallel determination by ICPMS. The results showed that the method performed well in detection limit, precision and accuracy, indicating that the plastic foam enrichment-ICP-MS method could be used to determine the trace amounts of gold in soil sample.

  16. Based on Penalty Function Method

    Directory of Open Access Journals (Sweden)

    Ishaq Baba

    2015-01-01

    Full Text Available The dual response surface for simultaneously optimizing the mean and variance models as separate functions suffers some deficiencies in handling the tradeoffs between bias and variance components of mean squared error (MSE. In this paper, the accuracy of the predicted response is given a serious attention in the determination of the optimum setting conditions. We consider four different objective functions for the dual response surface optimization approach. The essence of the proposed method is to reduce the influence of variance of the predicted response by minimizing the variability relative to the quality characteristics of interest and at the same time achieving the specific target output. The basic idea is to convert the constraint optimization function into an unconstraint problem by adding the constraint to the original objective function. Numerical examples and simulations study are carried out to compare performance of the proposed method with some existing procedures. Numerical results show that the performance of the proposed method is encouraging and has exhibited clear improvement over the existing approaches.

  17. Digestion and ruminal fermentation of cocoa pod silage based ration enriched by gliricidia and calliandra leaves on goats

    Directory of Open Access Journals (Sweden)

    Puastuti W

    2015-03-01

    Full Text Available In term of availability, cacao pod is potential for ruminant feed. According to its nutrients content, cacao pod can be used as feed fiber source. Protein sources materials must be added when cacao pod was ensilaged due to low protein content of this material. The aim of this study was to investigate digestibility value and end products of rumen fermentation of goat fed grass or cacao pod based ration. Randomized block design and 20 heads of lambs (16.95±2.36 kg to evaluated 5 type of rations: R (50% grass + 50% concentrate; S (50% cacao pod silage + 50% concentrate; SG (50% cacao pod-gliricidia silage + 50% concentrate; SK (50% cacao pod-calliandra silage + 50% concentrate dan SC (50% cacao pod-mixture of gliricidia-calliandra silage + 50% concentrate. Feeding trial was conducted for over 15 weeks. Measurements were taken on feed digestibility and rumen-fermentation end-products after 3 weeks of treatments. Results shows that nutrients digestibility was different significantly among the groups of treatments (P<0.05. Digestibillity of organic matter, NDF and energy of R ration was those of higher significantly (P<0.05 than those of other groups. N-ammonia of rumen from goat feed R ration was higher (P<0.05 than other groups. Total VFA and each component were different among the groups (P<0.05, however the value was similar among the groups of cacao pod silage rations. It is concluded that cacao pod silaged based rations enriched by Gliricidia and Calliandra leaves did not produce similar digestibility value and end products of rumen fermentation with grass based ration.

  18. Venturini Method Based Matrix Converter

    Directory of Open Access Journals (Sweden)

    Derick Mathew

    2015-03-01

    Full Text Available Recently, matrix converter has received considerable interest as a viable alternative to the conventional ac-dc-ac converter. This direct ac-ac converter provides some attractive characteristics such as: four quadrant operation, absence of bulky dc-link electrolyte capacitors, clean input power characteristics. Due to the absence of dc link energy storage elements any disturbance in the input voltage will be immediately reflected to the output voltages. In this paper venturini method for matrix converter has been presented. Three phase sinusoidal symmetrical voltage or current can obtained .

  19. Enrichment Methods of Phosphopeptides in Proteomics%蛋白质组学中磷酸化肽的常用富集方法

    Institute of Scientific and Technical Information of China (English)

    李鹏章; 王粤博

    2012-01-01

    The reversible phosphorylation of proteins is recognized as an important branch of proteomics. As one of the most important post-translational modifications, protein phosphorylation plays a very important role in cellular recognition, cellular signal transduction, gene expression and cellular metabolism. Exploration of phosphopeptides using appropriate methods can help us further understand the mechanism of physiology and pathology. However, mass spectra (MS) signals of phosphopeptides are frequently suppressed by the presence of abundant nonphosphopeptides and superabundant of salts which will cause poor selectivity. Therefore, selective enrichment of phosphopeptides is essential to facilitate the MS analysis. This paper summarizes several enrichment techniques of phosphopeptides, including immobilized metal affinity chromatography (IMAC), metal oxide enrichment methods, strong cation exchange chromatography (SCX), strong anion exchange chromatography (SAX) and matrix assisted laser desorption ionization (MALDI) on-plate enrichment methods, especially, the materials used in these enrichment methods have been discussed in detail. At the end of this review, the advantages and disadvantages of each method are summarized, and a prospect of effective enrichment strategies of phosphopeptides is given.%磷酸化作用是最重要的蛋白质翻译后修饰方式之一,它是蛋白质组学的一个重要分支,在细胞识别、细胞信息传递、基因表达和新陈代谢等方面发挥着重要作用。采用适当方法对磷酸化肽进行分析有助于我们更好地了解生理病理机制。但是直接进行质谱分析时磷酸化肽的信号强度会受到无机盐以及大量非磷酸化肽的抑制,选择性差。为解决这一难题,在质谱分析前要对磷酸化肽进行选择性富集。本文回顾了几种常用的磷酸化肽富集方法,介绍了每种方法的发展状况和常用材料,其中包括固定金属离子亲和

  20. Family, employment, and individual resource-based antecedents of maternal work-family enrichment from infancy through middle childhood.

    Science.gov (United States)

    Zhou, Nan; Buehler, Cheryl

    2016-07-01

    This study used data from the National Institute of Child Health and Human Development (NICHD) Study of Early Child Care and Youth Development (N = 1,019) to examine family, employment, and individual antecedents of maternal work-family enrichment from infancy through middle childhood. Work-family conflict and important confounding factors were controlled. From the family domain, higher income-to-needs ratio and social support were associated with higher work-family enrichment. From the employment domain, greater job rewards, benefits of employment for children, and work commitment were associated with higher work-family enrichment. From the individual domain, higher maternal education and extroversion were associated with higher work-family enrichment. No family, employment, and individual characteristics were associated with work-family conflict across time except for partner intimacy. In general, the results supported antecedents of work-family enrichment that supply needed resources. The present study contributed to the literature by identifying antecedents of maternal work-family enrichment across early child developmental stages, which goes beyond examinations of particular life stages and a work-family conflict perspective. Implications for theory and practice are discussed. (PsycINFO Database Record

  1. Family, employment, and individual resource-based antecedents of maternal work-family enrichment from infancy through middle childhood.

    Science.gov (United States)

    Zhou, Nan; Buehler, Cheryl

    2016-07-01

    This study used data from the National Institute of Child Health and Human Development (NICHD) Study of Early Child Care and Youth Development (N = 1,019) to examine family, employment, and individual antecedents of maternal work-family enrichment from infancy through middle childhood. Work-family conflict and important confounding factors were controlled. From the family domain, higher income-to-needs ratio and social support were associated with higher work-family enrichment. From the employment domain, greater job rewards, benefits of employment for children, and work commitment were associated with higher work-family enrichment. From the individual domain, higher maternal education and extroversion were associated with higher work-family enrichment. No family, employment, and individual characteristics were associated with work-family conflict across time except for partner intimacy. In general, the results supported antecedents of work-family enrichment that supply needed resources. The present study contributed to the literature by identifying antecedents of maternal work-family enrichment across early child developmental stages, which goes beyond examinations of particular life stages and a work-family conflict perspective. Implications for theory and practice are discussed. (PsycINFO Database Record PMID:26641483

  2. GC/MS method for determining carbon isotope enrichment and concentration of underivatized short-chain fatty acids by direct aqueous solution injection of biogas digester samples.

    Science.gov (United States)

    Mulat, Daniel Girma; Feilberg, Anders

    2015-10-01

    In anaerobic digestion of organic matter, several metabolic pathways are involved during the simultaneous production and consumption of short-chain fatty acids (SCFA) in general and acetate in particular. Understanding the role of each pathway requires both the determination of the concentration and isotope enrichment of intermediates in conjunction with isotope labeled substrates. The objective of this study was to establish a rapid and simple GC/MS method for determining the isotope enrichment of acetate and concentration of underivatized short-chain fatty acids (SCFA) in biogas digester samples by direct liquid injection of acidified aqueous samples. Sample preparation involves only acidification, centrifugation and filtration of the aqueous solution followed by direct injection of the aqueous supernatant solution onto a polar column. With the sample preparation and GC/MS conditions employed, well-resolved and sharp peaks of underivatized SCFA were obtained in a reasonably short time. Good recovery (96.6-102.3%) as well as low detection (4-7 µmol/L) and quantification limits (14-22 µmol/L) were obtained for all the 6 SCFA studied. Good linearity was achieved for both concentration and isotope enrichment measurement with regression coefficients higher than 0.9978 and 0.9996, respectively. The method has a good intra- and inter-day precision with a relative standard deviation (RSD) below 6% for determining the tracer-to-tracee ratio (TTR) of both [2-(13)C]acetate and [U-(13)C]acetate. It has also a good intra- and inter-day precision with a RSD below 6% and 5% for determining the concentration of standard solution and biogas digester samples, respectively. Acidification of biogas digester samples with oxalic acid provided the low pH required for the protonation of SCFA and thus, allows the extraction of SCFA from the complex sample matrix. Moreover, oxalic acid was the source of formic acid which was produced in the injector set at high temperature. The produced

  3. An interactive segmentation method based on superpixel

    DEFF Research Database (Denmark)

    Yang, Shu; Zhu, Yaping; Wu, Xiaoyu

    2015-01-01

    This paper proposes an interactive image-segmentation method which is based on superpixel. To achieve fast segmentation, the method is used to establish a Graphcut model using superpixels as nodes, and a new energy function is proposed. Experimental results demonstrate that the authors' method has...... excellent performance in terms of segmentation accuracy and computation efficiency compared with other segmentation algorithm based on pixels....

  4. Digital Autofocusing Method Based on Contourlet Transform

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The autofocusing technique based on contourlet transform is discussed in this paper and an autofocusing method is proposed for images with much information in certain directions. The experimental results show that theproposed method can focus accurately and the sensitivity ratio is higher than that of the other autofocusing methods based on conventional image processing

  5. ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles

    OpenAIRE

    Rider, Mark A.; Hurwitz, Stephanie N.; David G. Meckes Jr.

    2016-01-01

    Initially thought to be a means for cells to eliminate waste, secreted extracellular vesicles, known as exosomes, are now understood to mediate numerous healthy and pathological processes. Though abundant in biological fluids, purifying exosomes has been challenging because their biophysical properties overlap with other secreted cell products. Easy-to-use commercial kits for harvesting exosomes are now widely used, but the relative low-purity and high-cost of the preparations restricts their...

  6. Analysis of isotope element by electrolytic enrichment method for ground water and surface water in Saurashtra region, Gujarat, India

    Directory of Open Access Journals (Sweden)

    Sajal Singh

    2016-12-01

    Full Text Available The present study has been aimed for the assessment of isotope element Tritium (3H. It is a great threat to human health and environment for lengthy duration. The tritium exists in earth in diverse forms such as (1 small amounts of natural tritium are produced by alpha decay of lithium-7, (2 natural atmospheric tritium is also generated by secondary neutron cosmic ray bombardment of nitrogen, (3 atmospheric nuclear bomb testing in the 1950s, although the contribution from nuclear power plants is small. Tritium or 3H is a radioactive isotope of hydrogen with a half-life of 12.32 ± 0.02 years. Water samples from ground water, surface water, and precipitation were collected from different locations in Gujarat area and were analyzed for the same. Distillation of samples was done to reduce the conductivity. Deuterium and Hydrogen were removed by the process of physico-chemical fractionation in the tritium enrichment unit. The basis of physico-chemical fractionation is the difference in the strength of bonds formed by the light vs. the heavier isotope of a given element. A total of 10 cycles (runs were executed using Quintals process. Tritium concentration files were created with help of WinQ and Quick start software in Quintals process (Liquid Scintillation Spectrometer. The concentration of tritium in terms of tritium units (TU of various samples has been determined. The TU values of the samples vary in the range of 0.90–6.62 TU.

  7. Enriching Careers and Lives: Introducing a Positive, Holistic, and Narrative Career Counseling Method that Bridges Theory and Practice

    Science.gov (United States)

    Zikic, Jelena; Franklin, Mark

    2010-01-01

    CareerCycles (CC) career counseling framework and method of practice integrates and builds on aspects of positive psychology. Through its holistic and narrative approach, the CC method seeks to collaboratively identify and understand clients' career and life stories. It focuses on their strengths, desires, preferences, assets, future…

  8. Development of a microprocessing-assisted cell-systematic evolution of ligands by exponential enrichment method for human umbilical vein endothelial cells

    Science.gov (United States)

    Terazono, Hideyuki; Kim, Hyonchol; Nomura, Fumimasa; Yasuda, Kenji

    2016-06-01

    We developed a microprocessing-assisted technique to select single-strand DNA aptamers that bind to unknown targets on the cell surface by modifying the conventional systematic evolution of ligands by exponential enrichment (cell-SELEX). Our technique involves 1) the specific selection of target-cell-surface-bound aptamers without leakage of intracellular components by trypsinization and 2) cloning of aptamers by microprocessing-assisted picking of single cells using magnetic beads. After cell-SELEX, the enriched aptamers were conjugated with magnetic beads. The aptamer-magnetic beads conjugates attached to target cells were collected individually by microassisted procedures using microneedles under a microscope. After that, the sequences of the collected magnetic-bead-bound aptamers were identified. As a result, a specific aptamer for the surface of target cells, e.g., human umbilical vein endothelial cells (HUVECs), was chosen and its specificity was examined using other cell types, e.g., HeLa cells. The results indicate that this microprocessing-assisted cell-SELEX method for identifying aptamers is applicable in biological research and clinical diagnostics.

  9. A novel molecularly imprinted material based on magnetic halloysite nanotubes for rapid enrichment of 2,4-dichlorophenoxyacetic acid in water

    Energy Technology Data Exchange (ETDEWEB)

    Zhong, Shian; Zhou, Chengyun; Zhang, Xiaona [School of Chemistry and Chemical Engineering, Central South University, Changsha 410083 (China); Zhou, Hui [Cancer Hospital of Xiangya Medical College, Central South University, Changsha 410013 (China); Li, Hui; Zhu, Xiaohong [School of Chemistry and Chemical Engineering, Central South University, Changsha 410083 (China); Wang, Yan, E-mail: yanwangcsu@163.com [School of Chemistry and Chemical Engineering, Central South University, Changsha 410083 (China)

    2014-07-15

    Graphical abstract: - Highlights: • Successful preparation of a novel type of magnetic halloysite molecularly imprinted material. • Rapid enrichment for 2,4-dichlorophenoxyacetic acid in water. • This material possesses high adsorption capacity and specific recognition to 2,4-dichlorophenoxyacetic acid. • Magnetic halloysite were synthesized by co-precipitation method. - Abstract: A new type of magnetic halloysite nanotubes molecularly imprinted polymer (MHNTs@MIP) based on halloysite nanotubes (HNTs) with embedded magnetic nanoparticles was introduced in this study. MHNTs@MIP was prepared through surface imprinting technology, using 2,4-dichlorophenoxyacetic acid (2,4-D) as a template, 4-vinylpyridine as the monomer, divinylbenzene as cross-linking agents, and 2,2-azodiisobutyronitrile as initiator. MHNTs@MIP was characterized by Fourier Transform Infrared Spectrometer, transmission electron microscopy, X-ray diffraction, and vibrating sample magnetometer. MHNTs@MIP exhibited rapid and reliable analysis with supermagnetic properties, as well as repeated use and template-specific recognition. The adsorption capacity of magnetic halloysite nanotubes non-imprinted polymer (MHNTs@NIP) and MHNTs@MIP was 10.3 mg/g and 35.2 mg/g, respectively. In the detailed discussion on specific selectivity, MHNTs@MIP can be applied as an adsorbent for sample pretreatment extraction and obtain high recoveries of about 85–94%. After extraction, high-performance liquid chromatography was used to detect 2,4-D residue in water.

  10. A simple enzyme-substrate localized conjugation method to generate immobilized, functional glutathione S-transferase fusion protein columns for affinity enrichment.

    Science.gov (United States)

    Coughlin, John; Masci, Allyson; Gronke, Robert S; Bergelson, Svetlana; Co, Carl

    2016-07-15

    Immobilized protein receptors and enzymes are tools for isolating or enriching ligands and substrates based on affinity. For example, glutathione S-transferase (GST) is fused to proteins as a tag for binding to its substrate glutathione (GSH) linked to solid supports. One issue with this approach is that high-affinity interactions between receptors and ligands require harsh elution conditions such as low pH, which can result in leached receptor. Another issue is the inherent nonspecific chemical conjugation of reactive groups such as N-hydroxysuccinimide (NHS) that couple lysines to solid supports; the nonspecificity of NHS may result in residue modifications near the binding site(s) of the receptor that can affect ligand specificity. In this study, a simple conjugation procedure is presented that overcomes these limitations and results in immobilized GST fusion proteins that are functional and specific. Here, the affinity of GST for GSH was used to generate an enzyme-substrate site-specific cross-linking reaction; GSH-Sepharose was preactivated with 1-ethyl-3-(dimethylaminopropyl)carbodiimide (EDC) and then incubated Fc gamma receptor IIIa (FcγRIIIa)-GST. The immobilized FcγRIIIa-GST more specifically bound glycosylated immunoglobulin G1s (IgG1s) and was used to enrich nonfucosylated IgG1s from weaker binding species. This technique can be used when modifications of amino acids lead to changes in activity. PMID:27063248

  11. No Pain, No Gain? A Resource-Based Model of Work-to-Family Enrichment and Conflict

    Science.gov (United States)

    Chen, Zheng; Powell, Gary N.

    2012-01-01

    Work-family scholars tend to work in two largely disconnected research streams, focusing on either work-family enrichment--the positive side of the work-family interface--or work-family conflict--the negative side of this interface. The purpose of this study is to suggest a reconciliation of the two research streams by proposing and testing a…

  12. Enriching Education

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    "IPO" and "education" are two different animals, but they're beginning to cohabitate in China and hopefully will procreate smarts When the Beijing-based New Oriental School's parent company went public in New York on September 7, it essentially nullified the oxymoron "rich teacher."

  13. Reliability-based concurrent subspace optimization method

    Institute of Scientific and Technical Information of China (English)

    FAN Hui; LI Wei-ji

    2008-01-01

    To avoid the high computational cost and much modification in the process of applying traditional re-liability-based design optimization method, a new reliability-based concurrent subspace optimization approach is proposed based on the comparison and analysis of the existing muhidisciplinary optimization techniques and reli-ability assessment methods. It is shown through a canard configuration optimization for a three-surface transport that the proposed method is computationally efficient and practical with the least modification to the current de-terministic optimization process.

  14. A novel tantalum-based sol-gel packed microextraction syringe for highly specific enrichment of phosphopeptides in MALDI-MS applications.

    Science.gov (United States)

    Çelikbıçak, Ömür; Atakay, Mehmet; Güler, Ülkü; Salih, Bekir

    2013-08-01

    A new tantalum-based sol-gel material was synthesized using a unique sol-gel synthesis pathway by PEG incorporation into the sol-gel structure without performing a calcination step. This improved its chemical and physical properties for the high capacity and selective enrichment of phosphopeptides from protein digests in complex biological media. The specificity of the tantalum-based sol-gel material for phosphopeptides was evaluated and compared with tantalum(V) oxide (Ta2O5) in different phosphopeptide enrichment applications. The tantalum-based sol-gel and tantalum(V) oxide were characterized in detail using FT-IR spectroscopy, X-ray diffraction (XRD) and scanning electron microscopy (SEM), and also using a surface area and pore size analyzer. In the characterization studies, the surface morphology, pore volume, crystallinity of the materials and PEG incorporation into the sol-gel structure to produce a more hydrophilic material were successfully demonstrated. The X-ray diffractograms of the two different materials were compared and it was noted that the broad signals of the tantalum-based sol-gel clearly represented the amorphous structure of the sol-gel material, which was more likely to create enough surface area and to provide more accessible tantalum atoms for phosphopeptides to be easily adsorbed when compared with the neat and more crystalline structure of Ta2O5. Therefore, the phosphopeptide enrichment performance of the tantalum-based sol-gels was found to be remarkably higher than the more crystalline Ta2O5 in our studies. Phosphopeptides at femtomole levels could be selectively enriched using the tantalum-based sol-gel and detected with a higher signal-to-noise ratio by matrix-assisted laser desorption/ionization-mass spectrometer (MALDI-MS). Moreover, phosphopeptides in a tryptic digest of non-fat bovine milk as a complex real-world biological sample were retained with higher yield using a tantalum-based sol-gel. Additionally, the sol-gel material

  15. An efficient and target-oriented sample enrichment method for preparative separation of minor alkaloids by pH-zone-refining counter-current chromatography.

    Science.gov (United States)

    Feng, Rui-Hong; Hou, Jin-Jun; Zhang, Yi-Bei; Pan, Hui-Qin; Yang, Wenzhi; Qi, Peng; Yao, Shuai; Cai, Lu-Ying; Yang, Min; Jiang, Bao-Hong; Liu, Xuan; Wu, Wan-Ying; Guo, De-An

    2015-08-28

    An efficient and target-oriented sample enrichment method was established to increase the content of the minor alkaloids in crude extract by using the corresponding two-phase solvent system applied in pH-zone-refining counter-current chromatography. The enrichment and separation of seven minor indole alkaloids from Uncaria rhynchophylla (Miq.) Miq. ex Havil(UR) were selected as an example to show the advantage of this method. An optimized two-phase solvent system composed of n-hexane-ethyl acetate-methanol-water (3:7:1:9, v/v) was used in this study, where triethylamine (TEA) as the retainer and hydrochloric acid (HCl) as the eluter were added at the equimolar of 10mM. Crude alkaloids of UR dissolved in the corresponding upper phase (containing 10mM TEA) were extracted twice with lower phase (containing 10mM TEA) and lower phase (containing 10mM HCl), respectively, the second lower phase extract was subjected to pH-zone-refining CCC separation after alkalization and desalination. Finally, from 10g of crude alkaloids, 4g of refined alkaloids was obtained and the total content of seven target indole alkaloids was increased from 4.64% to 15.78%. Seven indole alkaloids, including 54mg isocorynoxeine, 21mg corynoxeine, 46mg isorhynchophylline, 35mg rhynchophylline, 65mg hirsutine, 51mg hirsuteine and 27mg geissoschizine methylether were all simultaneously separated from 2.5g of refined alkaloids, with the purity of 86.4%, 97.5%, 90.3%, 92.1%, 98.5%, 92.3%, and 92.8%, respectively. The total content and purities of the seven minor indole alkaloids were tested by HPLC and their chemical structures were elucidated by ESI-HRMS and (1)H NMR. PMID:26209189

  16. Discrete mechanics Based on Finite Element Methods

    OpenAIRE

    Chen, Jing-Bo; Guo, Han-Ying; Wu, Ke

    2002-01-01

    Discrete Mechanics based on finite element methods is presented in this paper. We also explore the relationship between this discrete mechanics and Veselov discrete mechanics. High order discretizations are constructed in terms of high order interpolations.

  17. Multicenter validation of PCR-based method for detection of Salmonella in chicken and pig samples

    DEFF Research Database (Denmark)

    Malorny, B.; Cook, N.; D'Agostino, M.;

    2004-01-01

    As part of a standardization project, an interlaboratory trial including 15 laboratories from 13 European countries was conducted to evaluate the performance of a noproprietary polymerase chain reaction (PCR)-based method for the detection of Salmonella on artificially contaminated chicken rinse......) and PCR assay (gel electrophoresis detection) were performed by the receiving laboratories. Aliquots of BPW enrichment cultures were sent to the participants, who analyzed them using a thermal lysis procedure followed by a validated Salmonella-specific PCR assay. The results were reported as negative...... and pig swab samples. The 3 levels were 1-10, 10-100, and 100-1000 colony-forming units (CFU)/100 mL. Sample preparations, including inoculation and pre-enrichment in buffered peptone water (BPW), were performed centrally in a German laboratory; the pre-PCR sample preparation (by a resin-based method...

  18. Gene-Based Analysis of Regionally Enriched Cortical Genes in GWAS Data Sets of Cognitive Traits and Psychiatric Disorders

    DEFF Research Database (Denmark)

    Ersland, Kari M; Christoforou, Andrea; Stansberg, Christine;

    2012-01-01

    the regionally enriched cortical genes to mine a genome-wide association study (GWAS) of the Norwegian Cognitive NeuroGenetics (NCNG) sample of healthy adults for association to nine psychometric tests measures. In addition, we explored GWAS data sets for the serious psychiatric disorders schizophrenia (SCZ) (n......¿=¿3 samples) and bipolar affective disorder (BP) (n¿=¿3 samples), to which cognitive impairment is linked....

  19. The Melt-Dilute Treatment of Al-Base Highly Enriched DOE Spent Nuclear Fuels: Principles and Practices

    International Nuclear Information System (INIS)

    The melt-dilute treatment technology program is focused on the development and implementation of a treatment technology for diluting highly enriched (>20 percent 235U) aluminum spent nuclear fuel to low enriched levels (<20 percent 235U) and qualifying the LEU Al-SNF form for geologic repository storage. In order to reduce the enrichment of these assemblies prior to ultimate geologic repository disposal, the melt-dilute technology proposes to melt these SNF assemblies and then dilute with additions of depleted uranium. The benefits accrued from this treatment process include the potential for significant volume reduction, reduced criticality potential, and the potential for enhanced SNF form characteristics. The emphasis within the development program to date has been on determining the process metallurgy and off-gas system design for the treatment of all types of Al SNF (UAlx, Al-U3O8, and Al-U3Si2). In determining the process metallurgy a wide range of alloys, representative of those expected in the Al-SNF form, have been fabricated and their product characteristics, namely microstructure, homogeneity, phase composition, and ''ternary'' constituent effects have been analyzed. As a result of the presence of species within the melt which will possess significant vapor pressures in the desired operating temperature range an off-gas system is necessary. Of the volitile species the one of greatest concern is 137Cs

  20. The Melt-Dilute Treatment of Al-Base Highly Enriched DOE Spent Nuclear Fuels: Principles and Practices

    Energy Technology Data Exchange (ETDEWEB)

    Adams, T.M.

    1998-11-25

    The melt-dilute treatment technology program is focused on the development and implementation of a treatment technology for diluting highly enriched (>20 percent 235U) aluminum spent nuclear fuel to low enriched levels (<20 percent 235U) and qualifying the LEU Al-SNF form for geologic repository storage. In order to reduce the enrichment of these assemblies prior to ultimate geologic repository disposal, the melt-dilute technology proposes to melt these SNF assemblies and then dilute with additions of depleted uranium. The benefits accrued from this treatment process include the potential for significant volume reduction, reduced criticality potential, and the potential for enhanced SNF form characteristics. The emphasis within the development program to date has been on determining the process metallurgy and off-gas system design for the treatment of all types of Al SNF (UAlx, Al-U3O8, and Al-U3Si2). In determining the process metallurgy a wide range of alloys, representative of those expected in the Al-SNF form, have been fabricated and their product characteristics, namely microstructure, homogeneity, phase composition, and "ternary" constituent effects have been analyzed. As a result of the presence of species within the melt which will possess significant vapor pressures in the desired operating temperature range an off-gas system is necessary. Of the volitile species the one of greatest concern is 137Cs.

  1. EMIS: Enrichment Management Information System

    International Nuclear Information System (INIS)

    The objective of the effort was the development of a calculational tool which would permit DOE to make realistic projections of the separative work demands of its customers as an aid in planning for the future operation of the enrichment facilities. The calculational methods were to recognize the flexibility in scheduling, etc., available to DOE customers under their enrichment contreacts as well as the ability to pool separative work withdrawn under two or more contracts. It was also to be designed to permit the user to add new customers or delete existing contracts as well as to allow variation of the estimated start-up dates for those reactors currently under construction. The output of the model was to display projections of separative work demand as SWU and in triplet form for several categories of reactors. These included, in addition to the total demand on the enrichment complex, separate totals for domestic and foreign customers, for reactors with Requirements and Adjustable Fixed Commitment contracts and for reactors in operation, under construction and projected new reactors designated by the user. The foundations upon which the system is based are described in this report. This includes a discussion of the available alternatives for customer management of separative work and the assumptions and guidelines established for development of the model. The report also contains a description of the computational procedures used in the model, and a description of the EMIS system itself, which also serves as a users' manual for the code. Finally, samples demonstrating the use of the system and indicating the form of the input and output are included

  2. Regulation of the Contribution of Integrin to Cell Attachment on Poly(2-Methoxyethyl Acrylate (PMEA Analogous Polymers for Attachment-Based Cell Enrichment.

    Directory of Open Access Journals (Sweden)

    Takashi Hoshiba

    Full Text Available Cell enrichment is currently in high demand in medical engineering. We have reported that non-blood cells can attach to a blood-compatible poly(2-methoxyethyl acrylate (PMEA substrate through integrin-dependent and integrin-independent mechanisms because the PMEA substrate suppresses protein adsorption. Therefore, we assumed that PMEA analogous polymers can change the contribution of integrin to cell attachment through the regulation of protein adsorption. In the present study, we investigated protein adsorption, cell attachment profiles, and attachment mechanisms on PMEA analogous polymer substrates. Additionally, we demonstrated the possibility of attachment-based cell enrichment on PMEA analogous polymer substrates. HT-1080 and MDA-MB-231 cells started to attach to poly(butyl acrylate (PBA and poly(tetrahydrofurfuryl acrylate (PTHFA, on which proteins could adsorb well, within 1 h. HepG2 cells started to attach after 1 h. HT-1080, MDA-MB-231, and HepG2 cells started to attach within 30 min to PMEA, poly(2-(2-methoxyethoxy ethyl acrylate-co-butyl acrylate (30:70 mol%, PMe2A and poly(2-(2-methoxyethoxy ethoxy ethyl acrylate-co-butyl acrylate (30:70 mol%, PMe3A, which suppress protein adsorption. Moreover, the ratio of attached cells from a cell mixture can be changed on PMEA analogous polymers. These findings suggested that PMEA analogous polymers can be used for attachment-based cell enrichment.

  3. Agent Based Image Segmentation Method : A Review

    OpenAIRE

    Pooja Mishra; Navita Srivastava; Shukla, K. K.; Achintya Singlal

    2011-01-01

    Image segmentation is an important research area in computer vision and many segmentation methods have been proposed. This paper attempts to provide a brief overview of elemental segmentation techniques based on boundary or regional approaches. It focuses mainly on the agent based image segmentation techniques

  4. Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications

    Directory of Open Access Journals (Sweden)

    Bekiranov Stefan

    2011-08-01

    Full Text Available Abstract Background The advent of ChIP-seq technology has made the investigation of epigenetic regulatory networks a computationally tractable problem. Several groups have applied statistical computing methods to ChIP-seq datasets to gain insight into the epigenetic regulation of transcription. However, methods for estimating enrichment levels in ChIP-seq data for these computational studies are understudied and variable. Since the conclusions drawn from these data mining and machine learning applications strongly depend on the enrichment level inputs, a comparison of estimation methods with respect to the performance of statistical models should be made. Results Various methods were used to estimate the gene-wise ChIP-seq enrichment levels for 20 histone methylations and the histone variant H2A.Z. The Multivariate Adaptive Regression Splines (MARS algorithm was applied for each estimation method using the estimation of enrichment levels as predictors and gene expression levels as responses. The methods used to estimate enrichment levels included tag counting and model-based methods that were applied to whole genes and specific gene regions. These methods were also applied to various sizes of estimation windows. The MARS model performance was assessed with the Generalized Cross-Validation Score (GCV. We determined that model-based methods of enrichment estimation that spatially weight enrichment based on average patterns provided an improvement over tag counting methods. Also, methods that included information across the entire gene body provided improvement over methods that focus on a specific sub-region of the gene (e.g., the 5' or 3' region. Conclusion The performance of data mining and machine learning methods when applied to histone modification ChIP-seq data can be improved by using data across the entire gene body, and incorporating the spatial distribution of enrichment. Refinement of enrichment estimation ultimately improved accuracy

  5. Simultaneous determination of silver and other heavy metals in aquatic environment receiving wastewater from industrial area, applying an enrichment method

    Directory of Open Access Journals (Sweden)

    Naeemullah

    2016-01-01

    Full Text Available In the present study, silver (Ag, cadmium (Cd, nickel (Ni, cobalt (Co and lead (Pb were simultaneously determined in water samples of fresh water canal receiving untreated effluents from an industrial area, of Sindh Pakistan. The analytes in the water sample were determined by CPE using ammonium pyrrolidinedithiocarbamate (APDC as a complexing agent and then entrapped in non-ionic surfactant, octylphenoxypolyethoxyethanol (Triton X-114. The surfactant rich phase was diluted with acidic ethanol prior to analysis by flame atomic absorption spectrometry. The variables affecting the complexation and extraction steps such as pH of sample solution, concentration of oxine and Triton X-114, equilibration temperature and time period for shaking were investigated in detail. The validation of the procedure was carried out by analysis of a certified reference sample of water (CRM1634e. Reliability of the proposed method was also checked by the standard addition method in a real sample at three concentration levels of all metals. Under the optimum conditions, the preconcentration of 10 mL sample solutions, allowed preconcentration factor of 20-fold. The lower limit of detection obtained for Ag, Cd, Ni, Co and Pb was 0.42, 0.48, 0.92, 0.62, and 1.42 μg L−1, respectively. The proposed procedure was successfully applied to waste and fresh water samples for simultaneous determination of different metals. The concentration of Ag, Cd, Ni, Co and Pb has shown a decreased trend from 46.5–6.96, 23.0–8.92, 30.2–12.8, 14.2–4.45 and 15.3–5.32 μg L−1, respectively from initial entrance of waste water along the downstream of canal.

  6. Report of Sectional Committee on Industrialization of Uranium Enrichment

    International Nuclear Information System (INIS)

    In order to accelerate the development and utilization of atomic energy which is the core of the substitute energies for petroleum, it is indispensable requirement to establish independent fuel cycle as the base. In particular, the domestic production of enriched uranium is necessary to eliminate the obstacles to secure the energy supply in Japan. The construction and operation of the pilot plant for uranium enrichment by centrifugal separation method have progressed smoothly, and the technical base for the domestic production of enriched uranium is being consolidated. For the time being, the service of uranium enrichment is given by USA and France, but it is expected that the short supply will arise around 1990. The start of operation of the uranium enrichment plant in Japan is scheduled around 1990, and the scale of the plant will be expanded stepwise thereafter. The scale of production is assumed as 3000 t SWU/year in 2000. Prior to this commercial plant, the prototype plant of up to 250 t SWU/year capacity will be operated in 1986, starting the production of centrifugal separators in 1983. The production line for centrifugal separators will have the capacity of up to 125 t SWU/year. The organization for operating these plants, the home production of natural uranium conversion, the uranium enrichment by chemical method and others are described. (Kako, I.)

  7. Software Testing Method Based on Model Comparison

    Institute of Scientific and Technical Information of China (English)

    XIE Xiao-dong; LU Yan-sheng; MAO Cheng-yin

    2008-01-01

    A model comparison based software testing method (MCST) is proposed. In this method, the requirements and programs of software under test are transformed into the ones in the same form, and described by the same model describe language (MDL).Then, the requirements are transformed into a specification model and the programs into an implementation model. Thus, the elements and structures of the two models are compared, and the differences between them are obtained. Based on the diffrences, a test suite is generated. Different MDLs can be chosen for the software under test. The usages of two classical MDLs in MCST, the equivalence classes model and the extended finite state machine (EFSM) model, are described with example applications. The results show that the test suites generated by MCST are more efficient and smaller than some other testing methods, such as the path-coverage testing method, the object state diagram testing method, etc.

  8. Development of cryogenic low background detector based on enriched zinc molybdate crystal scintillators to search for neutrinoless double beta decay of $^{100}$Mo

    CERN Document Server

    Chernyak, Dmitry

    2015-01-01

    ZnMoO$_4$ scintillators with a mass of $\\sim$ 0.3 kg, as well as Zn$^{100}$MoO$_4$ crystals enriched in the isotope $^{100}$Mo were produced for the first time by using the low-thermal-gradient Czochralski technique. The optical and luminescent properties of the produced crystals were studied to estimate the progress in crystal growth quality. The low-temperature tests with a 313 g ZnMoO$_4$ and two enriched Zn$^{100}$MoO$_4$ crystals were performed aboveground in the Centre de Sciences Nucl\\'eaires et de Sciences de la Mati\\`ere. The low background measurements with a three ZnMoO$_4$ and two enriched detectors installed in the EDELWEISS set-up at the Laboratoire Souterrain de Modane were carried out. To optimize the light collection in ZnMoO$_4$ scintillating bolometers, we have simulated the collection of scintillation photons in a detector module for different geometries by Monte Carlo method using the GEANT4 package. Response to the 2$\

  9. A Property Restriction Based Knowledge Merging Method

    Science.gov (United States)

    Che, Haiyan; Chen, Wei; Feng, Tie; Zhang, Jiachen

    Merging new instance knowledge extracted from the Web according to certain domain ontology into the knowledge base (KB for short) is essential for the knowledge management and should be processed carefully, since this may introduce redundant or contradictory knowledge, and the quality of the knowledge in the KB, which is very important for a knowledge-based system to provide users high quality services, will suffer from such "bad" knowledge. Advocates a property restriction based knowledge merging method, it can identify the equivalent instances, redundant or contradictory knowledge according to the property restrictions defined in the domain ontology and can consolidate the knowledge about equivalent instances and discard the redundancy and conflict to keep the KB compact and consistent. This knowledge merging method has been used in a semantic-based search engine project: CRAB and the effect is satisfactory.

  10. Cloud Based Development Issues: A Methodical Analysis

    Directory of Open Access Journals (Sweden)

    Sukhpal Singh

    2012-11-01

    Full Text Available Cloud based development is a challenging task for various software engineering projects, especifically for those which demand extraordinary quality, reusability and security along with general architecture. In this paper we present a report on a methodical analysis of cloud based development problems published in major computer science and software engineering journals and conferences organized by various researchers. Research papers were collected from different scholarly databases using search engines within a particular period of time. A total of 89 research papers were analyzed in this methodical study and we categorized into four classes according to the problems addressed by them. The majority of the research papers focused on quality (24 papers associated with cloud based development and 16 papers focused on analysis and design. By considering the areas focused by existing authors and their gaps, untouched areas of cloud based development can be discovered for future research works.

  11. Method for a human based design process

    OpenAIRE

    Van Herck, Tine

    2013-01-01

    We are developing a method for a human based design process. This means a design method that enables to improve the social relevance of projects. It can be applied to projects of different scale : from interior architecture to landscape strategies. What should be the attitude of a designer in today's society where all certainties threaten to disappear? How to contribute something small to society in order to create a stronger tissue, a safety net, a solid found...

  12. Recommendation advertising method based on behavior retargeting

    Science.gov (United States)

    Zhao, Yao; YIN, Xin-Chun; CHEN, Zhi-Min

    2011-10-01

    Online advertising has become an important business in e-commerce. Ad recommended algorithms are the most critical part in recommendation systems. We propose a recommendation advertising method based on behavior retargeting which can avoid leakage click of advertising due to objective reasons and can observe the changes of the user's interest in time. Experiments show that our new method can have a significant effect and can be further to apply to online system.

  13. Oil monitoring methods based on information theory

    Institute of Scientific and Technical Information of China (English)

    XIA Yan-chun; HUO Hua

    2009-01-01

    To evaluate the Wear condition of machines accurately,oil spectrographic entropy,mutual information and ICA analysis methods based on information theory are presented.A full-scale diagnosis utilizing all channels of spectrographic analysis can be obtained.By measuring the complexity and correlativity,the characteristics of wear condition of machines can be shown clearly.The diagnostic quality is improved.The analysis processes of these monitoring methods are given through the explanation of examples.The availability of these methods is validated and further research fields are demonstrated.

  14. Rough set-based feature selection method

    Institute of Scientific and Technical Information of China (English)

    ZHAN Yanmei; ZENG Xiangyang; SUN Jincai

    2005-01-01

    A new feature selection method is proposed based on the discern matrix in rough set in this paper. The main idea of this method is that the most effective feature, if used for classification, can distinguish the most number of samples belonging to different classes. Experiments are performed using this method to select relevant features for artificial datasets and real-world datasets. Results show that the selection method proposed can correctly select all the relevant features of artificial datasets and drastically reduce the number of features at the same time. In addition, when this method is used for the selection of classification features of real-world underwater targets,the number of classification features after selection drops to 20% of the original feature set, and the classification accuracy increases about 6% using dataset after feature selection.

  15. MRI-based brain atrophy rates in ADNI phase 2: acceleration and enrichment considerations for clinical trials.

    Science.gov (United States)

    Hua, Xue; Ching, Christopher R K; Mezher, Adam; Gutman, Boris A; Hibar, Derrek P; Bhatt, Priya; Leow, Alex D; Jack, Clifford R; Bernstein, Matt A; Weiner, Michael W; Thompson, Paul M

    2016-01-01

    The goal of this work was to assess statistical power to detect treatment effects in Alzheimer's disease (AD) clinical trials using magnetic resonance imaging (MRI)-derived brain biomarkers. We used unbiased tensor-based morphometry (TBM) to analyze n = 5,738 scans, from Alzheimer's Disease Neuroimaging Initiative 2 participants scanned with both accelerated and nonaccelerated T1-weighted MRI at 3T. The study cohort included 198 healthy controls, 111 participants with significant memory complaint, 182 with early mild cognitive impairment (EMCI) and 177 late mild cognitive impairment (LMCI), and 155 AD patients, scanned at screening and 3, 6, 12, and 24 months. The statistical power to track brain change in TBM-based imaging biomarkers depends on the interscan interval, disease stage, and methods used to extract numerical summaries. To achieve reasonable sample size estimates for potential clinical trials, the minimal scan interval was 6 months for LMCI and AD and 12 months for EMCI. TBM-based imaging biomarkers were not sensitive to MRI scan acceleration, which gave results comparable with nonaccelerated sequences. ApoE status and baseline amyloid-beta positron emission tomography data improved statistical power. Among healthy, EMCI, and LMCI participants, sample size requirements were significantly lower in the amyloid+/ApoE4+ group than for the amyloid-/ApoE4- group. ApoE4 strongly predicted atrophy rates across brain regions most affected by AD, but the remaining 9 of the top 10 AD risk genes offered no added predictive value in this cohort.

  16. Shelf-life study of Indian traditional food based nutraceutical (oryzanol) enriched instant mixes Bhath-OZ and Upma-OZ

    OpenAIRE

    Baby Latha, R.; Debnath, Sukumar; Sarmandal, C. V.; Hemavathy, J.; Khatoon, Sakina; Gopala Krishna, A. G.; Lokesh, B. R.

    2011-01-01

    To provide nutraceutical such as oryzanol through food, two instant mixes based on the Indian traditional food cuisine Bisibele bhath and Upma(Bhath-OZ and Upma-OZ) were developed and evaluated for shelf-life. The formulations contained cereals, pulses, and spices along with oryzanol enriched oil and were packed in 200gauge/50 gauge metallized polyester packaging material and stored under ambient (27 °C 65%RH) and accelerated conditions (37 °C/92%RH). Samples were withdrawn periodically and p...

  17. Bayesian individualization via sampling-based methods.

    Science.gov (United States)

    Wakefield, J

    1996-02-01

    We consider the situation where we wish to adjust the dosage regimen of a patient based on (in general) sparse concentration measurements taken on-line. A Bayesian decision theory approach is taken which requires the specification of an appropriate prior distribution and loss function. A simple method for obtaining samples from the posterior distribution of the pharmacokinetic parameters of the patient is described. In general, these samples are used to obtain a Monte Carlo estimate of the expected loss which is then minimized with respect to the dosage regimen. Some special cases which yield analytic solutions are described. When the prior distribution is based on a population analysis then a method of accounting for the uncertainty in the population parameters is described. Two simulation studies showing how the methods work in practice are presented. PMID:8827585

  18. Nataf transformation based point estimate method

    Institute of Scientific and Technical Information of China (English)

    LI HongShuang; L(U) ZhenZhou; YUAN XiuKai

    2008-01-01

    Structural probabilistic analysis quantifies the effect of input random variables, such as material proper-ties, geometrical parameters and loading conditions, on the structural responses. The point estimate method (PEM) is a direct and easy-used way to perform the structural probabilistic analysis in practice. In this paper, a novel and efficient point estimate method is proposed for computing the first four statistical moments of structural response which is a function of input random variables. The method adopts Nataf transformation to replace Rosenblatt transformation in conventional point estimate method. Because of the nature of engineering problems and limited statistical data, the joint probability density function (PDF) of all input random variables is hard to acquire, but it must be known in Rosenblatt transformation. A more common case is that the marginal PDF of each random variable and the correlation matrix are available, which just satisfy the service condition of Nataf transformation. Hence the Nataf transformation based point estimate method is particularly suitable for engineering applications. The comparison be-tween the proposed method and the conventional point estimate method shows that (1) they are equiva-lent when all random variables are mutually independent; (2) if the marginal PDFs and the correlation matrix are known, the conventional PEM cannot be applicable, but the proposed method can give a ra-tional approximation. Finally, the procedure is demonstrated in detail through a simple illustration.

  19. THE SUBSIDIARY NATURE OF THE UNJUST ENRICHMENT ACTION. CONTRACT-BASED ACTION VS. ACTIO DE IN REM VERSO. JURISPRUDENCE SEPARATION ONLY

    Directory of Open Access Journals (Sweden)

    Eugenia VOICHECI

    2014-05-01

    Full Text Available For the purpose of recovering a paid amount within the insured sum, however, in addition to the owed amount, the insurer sues his client for claims. Does the insurer have, to this end, a cleared way towards unjust enrichment? The provisions of the 1864 Civil Code do not contain definitions of ex contractu and actio de in rem verso. The doctrine has established the acceptability requirements of actio de in rem verso, however, it did not do the same for ex contractu, and there is no notable change to this matter after the Civil Code became effective. This situation is also maintained in the current Law No.287/2009 on the Civil Code. Hence, the separation of the configuration and enforcement area of the two types of actions continues to be done in terms of jurisprudence by strictly relating to the case at hand. The study starts from an actual case the settling of which highlights the issue of determining the subsidiary nature, hence the acceptability of the unjust enrichment. The purpose of this study is to re/focus on an old dichotomy, i.e. the contract-based action (ex contractu and the action based on an licit deed, that of unjust enrichment (actio de in rem verso. The primary goal of the study consists of highlighting the aspects that the provisions of the 1864 Civil Code and those of the new Civil Code have in common or not in terms of the two types of actions before the court, the doctrine-related solutions given as concerns the characteristics and legal status of the two actions and the fact that, in the nex Civil Code as well, the separation line between the two actions is determined on the basis of jurisprudence, being left at the judges' discretion and wisdom, with all related consequences thereof.

  20. REEF: searching REgionally Enriched Features in genomes

    Directory of Open Access Journals (Sweden)

    Danieli Gian Antonio

    2006-10-01

    Full Text Available Abstract Background In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional DNA elements in the Eukaryotic genomes opened the way to test novel hypotheses of higher order genome organization and regulation of expression. Results REEF is a new tool, aimed at identifying genomic regions enriched in specific features, such as a class or group of genes homogeneous for expression and/or functional characteristics. The method for the calculation of local feature enrichment uses test statistic based on the Hypergeometric Distribution applied genome-wide by using a sliding window approach and adopting the False Discovery Rate for controlling multiplicity. REEF software, source code and documentation are freely available at http://telethon.bio.unipd.it/bioinfo/reef/. Conclusion REEF can aid to shed light on the role of organization of specific genomic regions in the determination of their functional role.

  1. REEF: searching REgionally Enriched Features in genomes

    Science.gov (United States)

    Coppe, Alessandro; Danieli, Gian Antonio; Bortoluzzi, Stefania

    2006-01-01

    Background In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional DNA elements in the Eukaryotic genomes opened the way to test novel hypotheses of higher order genome organization and regulation of expression. Results REEF is a new tool, aimed at identifying genomic regions enriched in specific features, such as a class or group of genes homogeneous for expression and/or functional characteristics. The method for the calculation of local feature enrichment uses test statistic based on the Hypergeometric Distribution applied genome-wide by using a sliding window approach and adopting the False Discovery Rate for controlling multiplicity. REEF software, source code and documentation are freely available at . Conclusion REEF can aid to shed light on the role of organization of specific genomic regions in the determination of their functional role. PMID:17042935

  2. Topology based methods for vector field comparisons

    Science.gov (United States)

    Batra, Rajesh Kumar

    Vector fields are commonly found in almost all branches of the physical sciences. Aerodynamics, dynamical systems, electromagnetism, and global climate modeling are a few examples. These multivariate data fields are often large, and no general, automated method exists for comparing these fields. Existing methods require either subjective visual judgments, or data interface compatibility, or domain specific knowledge. A topology based method intrinsically eliminates all of the above limitations and has the additional advantage of significantly compressing the vector field by representing only key features of the flow. Therefore, large databases are compactly represented and quickly searched. Topology is a natural framework for the study of many vector fields. It provides rules of an organizing principle, a flow grammar, that can describe and connect together the properties common to flows. Helman and Hesselink first introduced automated methods to extract and visualize this grammar. This work extends their method by introducing automated methods for vector topology comparison. Basic two-dimensional flows are first compared. The theory is extended to compare three-dimensional flow fields and the topology on no-slip surfaces. Concepts from graph theory and linear programming are utilized to solve these problems. Finally, the first automated method for higher order singularity comparisons is introduced using mathematical theories from geometric (Clifford) algebra.

  3. Facial Beautification Method Based on Age Evolution

    Institute of Scientific and Technical Information of China (English)

    CHEN Yan; DING Shou-hong; HU Gan-le; MA Li-zhuang

    2013-01-01

    This paper proposes a new facial beautification method using facial rejuvenation based on the age evolution. Traditional facial beautification methods only focus on the color of skin and deformation and do the transformation based on an experimental standard of beauty. Our method achieves the beauty effect by making facial image looks younger, which is different from traditional methods and is more reasonable than them. Firstly, we decompose the image into different layers and get a detail layer. Secondly, we get an age-related parameter:the standard deviation of the Gaussian distribution that the detail layer follows, and the support vector machine (SVM) regression is used to fit a function about the age and the standard deviation. Thirdly, we use this function to estimate the age of input image and generate a new detail layer with a new standard deviation which is calculated by decreasing the age. Lastly, we combine the original layers and the new detail layer to get a new face image. Experimental results show that this algo-rithm can make facial image become more beautiful by facial rejuvenation. The proposed method opens up a new way about facial beautification, and there are great potentials for applications.

  4. Preparation of stir cake sorptive extraction based on polymeric ionic liquid for the enrichment of benzimidazole anthelmintics in water, honey and milk samples

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yulei [State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, College of the Environment and Ecology, Xiamen University, Siming Road, P.O. Box 1009, Xiamen 361005 (China); Zhang, Jie [Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences (China); Huang, Xiaojia, E-mail: hxj@xmu.edu.cn [State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, College of the Environment and Ecology, Xiamen University, Siming Road, P.O. Box 1009, Xiamen 361005 (China); Yuan, Dongxing [State Key Laboratory of Marine Environmental Science, Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, College of the Environment and Ecology, Xiamen University, Siming Road, P.O. Box 1009, Xiamen 361005 (China)

    2014-08-20

    Highlights: • A new polymeric ionic liquid-based monolith was prepared. • The monolith was used as the extractive medium of stir cake sorptive extraction. • The SCSE–AMIIDB can extract benzimidazole anthelmintics (BAs) effectively. • A combination of SCSE–AMIIDB–LD–HPLC/DAD was developed. • The combination was applied to monitor trace BAs in water, milk and honey samples. - Abstract: In this work, a new stir cake sorptive extraction (SCSE) using polymeric ionic liquid monolith as sorbent was prepared. The sorbent was obtained by in situ copolymerization of an ionic liquid, 1-allyl-3-methylimidazolium bis[(trifluoro methyl)sulfonyl]imide (AMII) and divinylbenzene (DB) in the presence of N,N-dimethylformamide. The influence of the content of ionic liquid and the porogen in the polymerization mixture on extraction performance was studied thoroughly. The physicochemical properties of the polymeric ionic liquid were characterized by infrared spectroscopy, elemental analysis, scanning electron microscopy and mercury intrusion porosimetry. The usefulness of SCSE–AMIIDB was demonstrated by the enrichment of trace benzimidazole anthelmintics. Several parameters affecting the extraction efficiency were investigated, and under the optimized conditions, a simple and effective method for the determination of trace benzimidazoles residues in water, milk and honey samples was established by coupling SCSE–AMIIDB with high performance liquid chromatography/diode array detection (SCSE–AMIIDB–HPLC/DAD). Results indicated that the limits of detection (S/N = 3) for target compounds were 0.020–0.072 μg L{sup −1}, 0.035–0.10 μg L{sup −1} and 0.026–0.076 μg L{sup −1} in water, milk and honey samples, respectively. In addition, an acceptable reproducibility was achieved by evaluating the repeatability and intermediate precision with relative standard deviations (RSD) of less than 9% and 11%, respectively. Finally, the established AMII

  5. Quantitative determination of 8-isoprostaglandin F(2α) in human urine using microfluidic chip-based nano-liquid chromatography with on-chip sample enrichment and tandem mass spectrometry.

    Science.gov (United States)

    Bai, Hsin-Yu; Lin, Shu-Ling; Chung, Yu-Ting; Liu, Tsung-Yun; Chan, Shan-An; Fuh, Ming-Ren

    2011-04-15

    Urinary 8-isoprostaglandin F(2α) (8-isoPGF(2α)) has been reported as an important biomarker to indicate the oxidative stress status in vivo. In order to quantitatively determine the low contents of 8-isoPGF(2α) (in sub- to low ng mL(-1) range) in physiological fluids, a sensitive detection method has become an important issue. In this study, we employed a microfluidic chip-based nano liquid chromatography (chip-nanoLC) with on-chip sample enrichment coupled to triple quadrupole mass spectrometer (QqQ-MS) for the quantitative determination of 8-isoPGF(2α) in human urine. This chip-nanoLC unit integrates a microfluidic switch, a chip column design having a pre-column (enrichment column) for sample enrichment prior to an analytical column for separation, as well as a nanospray emitter on a single polyimide chip. The introduction of enrichment column offers the advantages of online sample pre-concentration and reducing matrix influence on MS detection to improve sensitivity. In this study, the chip-nanoLC consisting of Zorbax 300A SB-C18 columns and Agilent QqQ Mass spectrometer were used for determining 8-isoPGF(2α) in human urine. Gradient elution was employed for effective LC separation and multiple reaction monitoring (MRM) was utilized for the quantitative determination of 8-isoPGF(2α) (m/z 353→193). We employed liquid-liquid extraction (LLE)/solid-phase extraction (SPE) for extracting analyte and reducing matrix effect from urine sample prior to chip-nanoLC/QqQ-MS analysis for determining urinary 8-isoPGF(2α). Good recoveries were found to be in the range of 83.0-85.3%. The linear range was 0.01-2 ng mL(-1) for urinary 8-isoPGF(2α). In addition, the proposed method showed good precision and accuracy for 8-isoPGF(2α) spiked synthetic urine samples. Intra-day and inter-day precisions were 1.8-5.0% and 4.3-5.8%, respectively. The method accuracy for intra-day and inter-day assays ranged from 99.3 to 99.9% and 99.4 to 99.7%, respectively. Due to its

  6. An image mosaic method based on corner

    Science.gov (United States)

    Jiang, Zetao; Nie, Heting

    2015-08-01

    In view of the shortcomings of the traditional image mosaic, this paper describes a new algorithm for image mosaic based on the Harris corner. Firstly, Harris operator combining the constructed low-pass smoothing filter based on splines function and circular window search is applied to detect the image corner, which allows us to have better localisation performance and effectively avoid the phenomenon of cluster. Secondly, the correlation feature registration is used to find registration pair, remove the false registration using random sampling consensus. Finally use the method of weighted trigonometric combined with interpolation function for image fusion. The experiments show that this method can effectively remove the splicing ghosting and improve the accuracy of image mosaic.

  7. Reinforcement Learning Based on Active Learning Method

    CERN Document Server

    Sagha, Hesam; Khasteh, Hosein; Kiaei, Ali Akbar

    2010-01-01

    In this paper, a new reinforcement learning approach is proposed which is based on a powerful concept named Active Learning Method (ALM) in modeling. ALM expresses any multi-input-single-output system as a fuzzy combination of some single-input-singleoutput systems. The proposed method is an actor-critic system similar to Generalized Approximate Reasoning based Intelligent Control (GARIC) structure to adapt the ALM by delayed reinforcement signals. Our system uses Temporal Difference (TD) learning to model the behavior of useful actions of a control system. The goodness of an action is modeled on Reward- Penalty-Plane. IDS planes will be updated according to this plane. It is shown that the system can learn with a predefined fuzzy system or without it (through random actions).

  8. OPTIMASI PEMADATAM CEPAT PADA PENGAYAAN MINYAK IKAN HASIL SAMPING PENGALENGAN LEMURU DENGAN ASAM LEMAK w-3 MENGGUNAKAN METODE PERMUKAAN RESPON [Optimization of Rapid Solidification to Enrich Fish Oil from by-Product of Lemuru Canning Processing with w-3 batty Acids by Response Surface Method

    Directory of Open Access Journals (Sweden)

    Teti Estiasih1

    2005-12-01

    Full Text Available Oil from by-product of lemuru canning processing was a source of w-3 fatty acid but its characteristics had out been known. The content of w-3 fatty acids of this oil had to be increased. Various methods are available to enhance w-3 fatty acids concentration Rapid solidification was one of limited methods to enrich fish oil by w-3 fatty acids containing triglycerides.This research was conducted to optimize rapid solidification condition to enrich fish oil from by product of lemuru canning processing with w-3 fatty acids and characterize the enriched oil compared by International Association of Fish Meal and Oil Manufacturers standard. In optimization process, the content of EPA+OHA and yield .was maximized. A two-factors central composite design in Response Surface Method was used to study the effect of solvent-to-oil ratio (X1 and extraction time (X2. The response (Y is the multiplication of EPA+DHA content by yield.The results showed that under optimum conditions the maximum response were obtained at a solvent-to-oil ratio of 3,95:1(vw and extraction time of 24,93 hours. The w-3 fatty acids enriched fish oil had EPA+DHA content of 33,33% and yield of 9.40% (w/w.The produced w-3 fatty acids enriched fish oil had good quality based on food grade fish oil standard, unless Fe and Cu content. Chelation could reduce these oxidizing metals.

  9. Basic uranium-235 enrichment by the Asahi Chemical Enrichment Process (ACEP)

    International Nuclear Information System (INIS)

    The development of Asahi Chemical Enrichment Process (ACEP) led to the establishment of basic process technology permitting attainment of 3% enrichment within several months of operation by the mid-1980s, through advances which brought increased electron-exchange and adsorption-desorption reaction rates, effective uranium adsorption band formation and maintenance, and equilibrium plate height reductions based on the elucidation of mobile-phase dispersion. The theoretical and experimental development of redox agent self-regeneration led to a new 'Super Process' characterized by greater simplicity and efficiency than previously thought possible. A semi-commercial plant with enrichment columns of 1 m in diameter and 3 m in height, constructed at Hyuga City in Miyazaki Prefecture, demonstrated 3% uranium enrichment in April 1988. Through the improvement of enrichment efficiency, overall enrichment costs have been greatly lowered. The advantage of the chemical enrichment process, and its low cost of enrichment, have now been clearly demonstrated. (author)

  10. AN SVAD ALGORITHM BASED ON FNNKD METHOD

    Institute of Scientific and Technical Information of China (English)

    Chen Dong; Zhang Yan; Kuang Jingming

    2002-01-01

    The capacity of mobile communication system is improved by using Voice Activity Detection (VAD) technology. In this letter, a novel VAD algorithm, SVAD algorithm based on Fuzzy Neural Network Knowledge Discovery (FNNKD) method is proposed. The performance of SVAD algorithm is discussed and compared with traditional algorithm recommended by ITU G.729B in different situations. The simulation results show that the SVAD algorithm performs better.

  11. Lagrangian based methods for coherent structure detection

    Energy Technology Data Exchange (ETDEWEB)

    Allshouse, Michael R., E-mail: mallshouse@chaos.utexas.edu [Center for Nonlinear Dynamics and Department of Physics, University of Texas at Austin, Austin, Texas 78712 (United States); Peacock, Thomas, E-mail: tomp@mit.edu [Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 (United States)

    2015-09-15

    There has been a proliferation in the development of Lagrangian analytical methods for detecting coherent structures in fluid flow transport, yielding a variety of qualitatively different approaches. We present a review of four approaches and demonstrate the utility of these methods via their application to the same sample analytic model, the canonical double-gyre flow, highlighting the pros and cons of each approach. Two of the methods, the geometric and probabilistic approaches, are well established and require velocity field data over the time interval of interest to identify particularly important material lines and surfaces, and influential regions, respectively. The other two approaches, implementing tools from cluster and braid theory, seek coherent structures based on limited trajectory data, attempting to partition the flow transport into distinct regions. All four of these approaches share the common trait that they are objective methods, meaning that their results do not depend on the frame of reference used. For each method, we also present a number of example applications ranging from blood flow and chemical reactions to ocean and atmospheric flows.

  12. Phase space bases for response matrix methods

    International Nuclear Information System (INIS)

    New basis functions in space, angle, and energy are developed for use in the eigenvalue response matrix method (ERMM). ERMM solves reactor eigenvalue problems by spatially decomposing a model and linking the resulting independent nodes through approximate boundary conditions. The conditions are defined via a set of nodal transport calculations for which the forcing function is a tensor product of basis functions in all phase space variables on one nodal surface (with vacuum elsewhere). Traditional implementations of ERMM have used the standard bases of mathematical physics, including Legendre polynomials and their discrete analogs. Alternatively, new bases that incorporate some physics a priori are shown to yield satisfactory results with far lower expansion orders than is possible with more traditional bases. In particular, a very simple spatial basis incorporating pin-dependent spatial variation reduces partial current errors by nearly an order of magnitude over a standard basis. In angle, conservative bases with appropriate angular quadratures outperform simpler bases. In energy, incorporating representative spectral information from infinite medium calculations results in a basis that can achieve sub-1% pin fission rate errors with as low as a 5th order expansion in energy for a 44-group problem. The results indicate that highly-accurate, low-order response matrix solutions should be feasible for reactor physics analysis. (author)

  13. Chapter 11. Community analysis-based methods

    Energy Technology Data Exchange (ETDEWEB)

    Cao, Y.; Wu, C.H.; Andersen, G.L.; Holden, P.A.

    2010-05-01

    Microbial communities are each a composite of populations whose presence and relative abundance in water or other environmental samples are a direct manifestation of environmental conditions, including the introduction of microbe-rich fecal material and factors promoting persistence of the microbes therein. As shown by culture-independent methods, different animal-host fecal microbial communities appear distinctive, suggesting that their community profiles can be used to differentiate fecal samples and to potentially reveal the presence of host fecal material in environmental waters. Cross-comparisons of microbial communities from different hosts also reveal relative abundances of genetic groups that can be used to distinguish sources. In increasing order of their information richness, several community analysis methods hold promise for MST applications: phospholipid fatty acid (PLFA) analysis, denaturing gradient gel electrophoresis (DGGE), terminal restriction fragment length polymorphism (TRFLP), cloning/sequencing, and PhyloChip. Specific case studies involving TRFLP and PhyloChip approaches demonstrate the ability of community-based analyses of contaminated waters to confirm a diagnosis of water quality based on host-specific marker(s). The success of community-based MST for comprehensively confirming fecal sources relies extensively upon using appropriate multivariate statistical approaches. While community-based MST is still under evaluation and development as a primary diagnostic tool, results presented herein demonstrate its promise. Coupled with its inherently comprehensive ability to capture an unprecedented amount of microbiological data that is relevant to water quality, the tools for microbial community analysis are increasingly accessible, and community-based approaches have unparalleled potential for translation into rapid, perhaps real-time, monitoring platforms.

  14. Optimization of fuel rod enrichment distribution for BWR fuel assembly

    Energy Technology Data Exchange (ETDEWEB)

    Hirano, Yasushi; Hida, Kazuki; Sakurada, Koichi; Yamamoto, Munenari [Toshiba Corp., Kawasaki, Kanagawa (Japan). Nuclear Engineering Lab.

    1996-09-01

    A practical method was developed for determining the optimum fuel enrichment distribution within a boiling water reactor fuel assembly. The method deals with two different optimization problems, i.e. the combinatorial optimization problem of grouping fuel rods into a given number of rod groups with the same enrichment, and the problem of determining an optimal enrichment for each fuel rod under the resultant rod-grouping pattern. In solving these problems, the primary goal is to minimize a predefined objective function over a given exposure period. The objective function used here is defined by the linear combination C{sub 1}X + C{sub 2}X{sub G}, where X and X{sub G} stand, respectively, for control variables giving constraint to the local power peaking factor and the gadolinium rod power. C{sub 1} and C{sub 2} are user-definable weighting factors to accommodate design preferences. The algorithm for solving this combinatorial optimization problem starts by finding the optimal enrichment vector without any rod-grouping, and promising candidates of rod-grouping patterns are found by exhaustive enumeration based on the resulting fuel enrichment ordering. This latter problem is solved using the method of approximation programming. A practical application is shown for a contemporary 8 x 8 Pu mixed-oxide fuel assembly with 10 gadolinium-poisoned rods. (author)

  15. A Novel Reverse-Transcriptase Real-Time PCR Method for Quantification of Viable Vibrio Parahemolyticus in Raw Shrimp Based on a Rapid Construction of Standard Curve Method

    OpenAIRE

    Mengtong Jin; Haiquan Liu; Wenshuo Sun; Qin Li; Zhaohuan Zhang; Jibing Li; Yingjie Pan; Yong Zhao

    2015-01-01

    Vibrio parahemolyticus is an important pathogen that leads to food illness associated seafood. Therefore, rapid and reliable methods to detect and quantify the total viable V. parahaemolyticus in seafood are needed. In this assay, a RNA-based real-time reverse-transcriptase PCR (RT-qPCR) without an enrichment step has been developed for detection and quantification of the total viable V. parahaemolyticus in shrimp. RNA standards with the target segments were synthesized in vitro with T7 RNA p...

  16. Peak fitting applied to low-resolution enrichment measurements

    Energy Technology Data Exchange (ETDEWEB)

    Bracken, D.; McKown, T.; Sprinkle, J.K. Jr. [Los Alamos National Lab., NM (United States); Gunnink, R. [Lawrence Livermore National Lab., CA (United States); Kartoshov, M.; Kuropatwinski, J.; Raphina, G.; Sokolov, G. [Ulba Metallurgical Facility, Ust-Kamenogorsk (Kazakhstan)

    1998-12-01

    Materials accounting at bulk processing facilities that handle low enriched uranium consists primarily of weight and uranium enrichment measurements. Most low enriched uranium processing facilities draw separate materials balances for each enrichment handled at the facility. The enrichment measurement determines the isotopic abundance of the {sup 235}U, thereby determining the proper strata for the item, while the weight measurement generates the primary accounting value for the item. Enrichment measurements using the passive gamma radiation from uranium were developed for use in US facilities a few decades ago. In the US, the use of low-resolution detectors was favored because they cost less, are lighter and more robust, and don`t require the use of liquid nitrogen. When these techniques were exported to Europe, however, difficulties were encountered. Two of the possible root causes were discovered to be inaccurate knowledge of the container wall thickness and higher levels of minor isotopes of uranium introduced by the use of reactor returns in the enrichment plants. the minor isotopes cause an increase in the Compton continuum under the 185.7 keV assay peak and the observance of interfering 238.6 keV gamma rays. The solution selected to address these problems was to rely on the slower, more costly, high-resolution gamma ray detectors when the low-resolution method failed. Recently, these gamma ray based enrichment measurement techniques have been applied to Russian origin material. The presence of interfering gamma radiation from minor isotopes was confirmed. However, with the advent of fast portable computers, it is now possible to apply more sophisticated analysis techniques to the low-resolution data in the field. Explicit corrections for Compton background, gamma rays from {sup 236}U daughters, and the attenuation caused by thick containers can be part of the least squares fitting routine. Preliminary results from field measurements in Kazakhstan will be

  17. Enrichment, development, and assessment of Indian basil oil based antiseptic cream formulation utilizing hydrophilic-lipophilic balance approach.

    Science.gov (United States)

    Yadav, Narayan Prasad; Meher, Jaya Gopal; Pandey, Neelam; Luqman, Suaib; Yadav, Kuldeep Singh; Chanda, Debabrata

    2013-01-01

    The present work was aimed to develop an antiseptic cream formulation of Indian basil oil utilizing hydrophilic-lipophilic balance approach. In order to determine the required-hydrophilic lipophilic balance (rHLB) of basil oil, emulsions of basil oil were prepared by phase inversion temperature technique using water, Tween 80, and Span 80. Formulated emulsions were assessed for creaming (BE9; 9.8, BE10; 10.2), droplet size (BE18; 3.22 ± 0.09 μ m), and turbidity (BE18; 86.12 ± 2.1%). To ensure correctness of the applied methodology, rHLB of light liquid paraffin was also determined. After rHLB determination, basil oil creams were prepared with two different combinations of surfactants, namely, GMS : Tween 80 (1 : 3.45) and SLS : GMS (1 : 3.68), and evaluated for in vitro antimicrobial activity, skin irritation test, viscosity and consistency. The rHLB of basil oil and light liquid paraffin were found to be 13.36 ± 0.36 and 11.5 ± 0.35, respectively. Viscosity, and consistency parameters of cream was found to be consistent over 90 days. Cream formulations showed net zone of growth inhibition in the range of 5.0-11.3 mm against bacteria and 4.3-7.6 mm against fungi. Primary irritation index was found to be between 0.38 and1.05. Conclusively stable, consistent, non-irritant, enriched antiseptic basil oil cream formulations were developed utilizing HLB approach.

  18. A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing.

    Directory of Open Access Journals (Sweden)

    John E McCormack

    Full Text Available Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous lineages. We applied a new phylogenomic approach to resolve relationships in Neoaves using target enrichment (sequence capture and high-throughput sequencing of ultraconserved elements (UCEs in avian genomes. We collected sequence data from UCE loci for 32 members of Neoaves and one outgroup (chicken and analyzed data sets that differed in their amount of missing data. An alignment of 1,541 loci that allowed missing data was 87% complete and resulted in a highly resolved phylogeny with broad agreement between the Bayesian and maximum-likelihood (ML trees. Although results from the 100% complete matrix of 416 UCE loci were similar, the Bayesian and ML trees differed to a greater extent in this analysis, suggesting that increasing from 416 to 1,541 loci led to increased stability and resolution of the tree. Novel results of our study include surprisingly close relationships between phenotypically divergent bird families, such as tropicbirds (Phaethontidae and the sunbittern (Eurypygidae as well as between bustards (Otididae and turacos (Musophagidae. This phylogeny bolsters support for monophyletic waterbird and landbird clades and also strongly supports controversial results from previous studies, including the sister relationship between passerines and parrots and the non-monophyly of raptorial birds in the hawk and falcon families. Although significant challenges remain to fully resolving some of the deep relationships in Neoaves, especially among lineages outside the waterbirds and landbirds, this study suggests that increased data will yield an increasingly resolved avian phylogeny.

  19. eEF1A1 binds and enriches protoporphyrin IX in cancer cells in 5-aminolevulinic acid based photodynamic therapy

    Science.gov (United States)

    Fan, Zhichao; Cui, Xiaojun; Wei, Dan; Liu, Wei; Li, Buhong; He, Hao; Ye, Huamao; Zhu, Naishuo; Wei, Xunbin

    2016-05-01

    Photodynamic therapy (PDT) with protoporphyrin IX (PpIX), which is endogenously derived from 5-aminolevulinic acid (5-ALA) or its derivatives, is a promising modality for the treatment of both pre-malignant and malignant lesions. However, the mechanisms of how ALA-induced PpIX selectively accumulated in the tumors are not fully elucidated. Here we discovered that eukaryotic translation elongation factor 1 alpha 1 (eEF1A1) interacted with PpIX (with an affinity constant of 2.96 × 106 M‑1). Microscopy imaging showed that ALA-induced PpIX was co-localized with eEF1A1 in cancer cells. eEF1A1 was found to enrich ALA-induced PpIX in cells by competitively blocking the downstream bioavailability of PpIX. Taken together, our study discovered eEF1A1 as a novel photosensitizer binding protein, which may play an essential role in the enrichment of ALA-induced PpIX in cancer cells during PDT. These suggested eEF1A1 as a molecular marker to predict the selectivity and efficiency of 5-ALA based PDT in cancer therapy.

  20. Natural gas C3-C8 Hydrocarbon Enrichment Analysis Methods%天然气C3-C8烃类浓缩分析新方法

    Institute of Scientific and Technical Information of China (English)

    杨晓春; 王璋

    2015-01-01

    天然气形成的原因,但在一般情况下,天然气和油的成因是不同的,在天然气中,所用的有用信息数量不多。根据这一情况,自己配制了以C3—C8烃为主的天然气浓缩器,而当场就可以去井口搜集天然气的、浓缩的样品,在此基础上,形成了以天然气C3—C8烃为主的浓缩方法。对于该方法,能把天然气中的C3—C8烃类物质分析出来,从而完成了任务,即对天然气组分不多、气源相对不易,这是一个新的思路、方法,值得我们学习。%The causes of the formation of natural gas,but in general,the causes of natural gas an d oil are different,in natural gas,the small number of useful information.According to this situation,make myself a predominantly C3 - C8 hydrocarbon gas concentrator,and can go on the wellhead collecting gas,concentration of sample,on this basis,formed mainly gas C3 - C8 hydrocarbon enrichment method.For the method,can change the C3 - C8 hydrocarbons in natural gas analysis,so as to complete the task,namely a few components of natural gas,gas source is relatively difficult,this is a new train of thought,method and worth our learning.

  1. Meshless numerical method based on tensor product

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    A normalized space constructed by tensor product is used in field function approach to give a special case of moving least squares (MLS) interpolation scheme.In the regular domain,the field function which meets homogenous boundary conditions is constructed by spanning base space to make the MLS interpolation scheme simpler and more efficient.Owing to expanded basis functions selection,some drawbacks in general MLS method,for example repeated inversion,low calculation efficiency,and complex criterions,can be avoided completely.Numerical examples illustrate that the proposed method is characterized by simple mathematical concept,convenient repeat calculations with high accuracy,good continuity,less computation and rapid convergence.

  2. Kernel method-based fuzzy clustering algorithm

    Institute of Scientific and Technical Information of China (English)

    Wu Zhongdong; Gao Xinbo; Xie Weixin; Yu Jianping

    2005-01-01

    The fuzzy C-means clustering algorithm(FCM) to the fuzzy kernel C-means clustering algorithm(FKCM) to effectively perform cluster analysis on the diversiform structures are extended, such as non-hyperspherical data, data with noise, data with mixture of heterogeneous cluster prototypes, asymmetric data, etc. Based on the Mercer kernel, FKCM clustering algorithm is derived from FCM algorithm united with kernel method. The results of experiments with the synthetic and real data show that the FKCM clustering algorithm is universality and can effectively unsupervised analyze datasets with variform structures in contrast to FCM algorithm. It is can be imagined that kernel-based clustering algorithm is one of important research direction of fuzzy clustering analysis.

  3. Trinocular Calibration Method Based on Binocular Calibration

    Directory of Open Access Journals (Sweden)

    CAO Dan-Dan

    2012-10-01

    Full Text Available In order to solve the self-occlusion problem in plane-based multi-camera calibration system and expand the measurement range, a tri-camera vision system based on binocular calibration is proposed. The three cameras are grouped into two pairs, while the public camera is taken as the reference to build the global coordinate. By calibration of the measured absolute distance and the true absolute distance, global calibration is realized. The MRE (mean relative error of the global calibration of the two camera pairs in the experiments can be as low as 0.277% and 0.328% respectively. Experiment results show that this method is feasible, simple and effective, and has high precision.

  4. On Task-based English Learning Method

    Institute of Scientific and Technical Information of China (English)

    朱蕾

    2010-01-01

    @@ Task-Based learning(TBL)is becoming a catchword in English circles.The new national English Curricular Syllabus also recommends the use of the TBL approach in classroom teaching.The purpose of learning a foreign language is the most direct communicative in the target language,and speaking is the most direct communicative method.In recent years,with the publication of the New Curriculum Standard by the State Education Department,the teaching reform in middle and primary schools has been being implemented step by step.

  5. 基于大体积循环进样的低丰度蛋白质富集%Protein enrichment based on large volume recycling injection

    Institute of Scientific and Technical Information of China (English)

    张权青; 张磊; 高小迪; 张维冰; 张庆合

    2014-01-01

    发展了一种大体积循环进样方法,用于富集低丰度蛋白质。在优化的色谱分离条件下,通过增加蛋白质样品的上样体积提高低丰度蛋白质的绝对含量;进一步采用增加样品进样循环次数的方法提高蛋白质的富集效率。以猪肝提取蛋白质为样品,每次上样量500μL 的大体积11次循环进样。根据色谱峰的信号强弱,选择了在原始谱图中看不到色谱峰、有较少小峰和有较多小峰出现的时间段等有代表性的馏分进行研究。在中等极性的组分中,保留时间为11.38 min 和12.58 min 组分的富集效率分别提高了52倍和61倍,实验结果与理论富集效率相近。所发展的方法为生物蛋白质样品研究提供了一种新的富集制备及检测方法。%Biological proteins have great differences in size,hydrophobicity,pH and relative abundance. Especially,the relative contents of high-abundance proteins and low abundance proteins can reach 11 orders of magnitude or more in blood. However,the contents of proteins which have an important impact on the biological function and have related to major diseases are usually very low in body fluids or tissues. So,it is very meaningful to detect the low abun-dance proteins in biological samples. A method of large volume recycling injection was devel-oped as a new sample enrichment technology in this study. The low absolute contents of pro-teins in a sample were improved by increasing the volume of sample,and the enrichment effi-ciency was also increased with the addition of injection times. With the pork liver protein as an example,under the optimized conditions,the representative contents which were no peaks or little peaks and more peaks with low signals were studied. The contents of peaks at the reten-tion times of 11. 38 min and 12. 58 min were enriched by 11 time injections of 500 μL each time. The enrichment factors respectively reached 52 and 61 which were closed to

  6. Evaluation of Hybridization Capture Versus Amplicon‐Based Methods for Whole‐Exome Sequencing

    Science.gov (United States)

    Samorodnitsky, Eric; Jewell, Benjamin M.; Hagopian, Raffi; Miya, Jharna; Wing, Michele R.; Lyon, Ezra; Damodaran, Senthilkumar; Bhatt, Darshna; Reeser, Julie W.; Datta, Jharna

    2015-01-01

    ABSTRACT Next‐generation sequencing has aided characterization of genomic variation. While whole‐genome sequencing may capture all possible mutations, whole‐exome sequencing remains cost‐effective and captures most phenotype‐altering mutations. Initial strategies for exome enrichment utilized a hybridization‐based capture approach. Recently, amplicon‐based methods were designed to simplify preparation and utilize smaller DNA inputs. We evaluated two hybridization capture‐based and two amplicon‐based whole‐exome sequencing approaches, utilizing both Illumina and Ion Torrent sequencers, comparing on‐target alignment, uniformity, and variant calling. While the amplicon methods had higher on‐target rates, the hybridization capture‐based approaches demonstrated better uniformity. All methods identified many of the same single‐nucleotide variants, but each amplicon‐based method missed variants detected by the other three methods and reported additional variants discordant with all three other technologies. Many of these potential false positives or negatives appear to result from limited coverage, low variant frequency, vicinity to read starts/ends, or the need for platform‐specific variant calling algorithms. All methods demonstrated effective copy‐number variant calling when evaluated against a single‐nucleotide polymorphism array. This study illustrates some differences between whole‐exome sequencing approaches, highlights the need for selecting appropriate variant calling based on capture method, and will aid laboratories in selecting their preferred approach. PMID:26110913

  7. Evaluation of Hybridization Capture Versus Amplicon-Based Methods for Whole-Exome Sequencing.

    Science.gov (United States)

    Samorodnitsky, Eric; Jewell, Benjamin M; Hagopian, Raffi; Miya, Jharna; Wing, Michele R; Lyon, Ezra; Damodaran, Senthilkumar; Bhatt, Darshna; Reeser, Julie W; Datta, Jharna; Roychowdhury, Sameek

    2015-09-01

    Next-generation sequencing has aided characterization of genomic variation. While whole-genome sequencing may capture all possible mutations, whole-exome sequencing remains cost-effective and captures most phenotype-altering mutations. Initial strategies for exome enrichment utilized a hybridization-based capture approach. Recently, amplicon-based methods were designed to simplify preparation and utilize smaller DNA inputs. We evaluated two hybridization capture-based and two amplicon-based whole-exome sequencing approaches, utilizing both Illumina and Ion Torrent sequencers, comparing on-target alignment, uniformity, and variant calling. While the amplicon methods had higher on-target rates, the hybridization capture-based approaches demonstrated better uniformity. All methods identified many of the same single-nucleotide variants, but each amplicon-based method missed variants detected by the other three methods and reported additional variants discordant with all three other technologies. Many of these potential false positives or negatives appear to result from limited coverage, low variant frequency, vicinity to read starts/ends, or the need for platform-specific variant calling algorithms. All methods demonstrated effective copy-number variant calling when evaluated against a single-nucleotide polymorphism array. This study illustrates some differences between whole-exome sequencing approaches, highlights the need for selecting appropriate variant calling based on capture method, and will aid laboratories in selecting their preferred approach. PMID:26110913

  8. Bus Based Synchronization Method for CHIPPER Based NoC

    Directory of Open Access Journals (Sweden)

    D. Muralidharan

    2016-01-01

    Full Text Available Network on Chip (NoC reduces the communication delay of System on Chip (SoC. The main limitation of NoC is power consumption and area overhead. Bufferless NoC reduces the area complexity and power consumption by eliminating buffers in the traditional routers. The bufferless NoC design should include live lock freeness since they use hot potato routing. This increases the complexity of bufferless NoC design. Among the available propositions to reduce this complexity, CHIPPER based bufferless NoC is considered as one of the best options. Live lock freeness is provided in CHIPPER through golden epoch and golden packet. All routers follow some synchronization method to identify a golden packet. Clock based method is intuitively followed for synchronization in CHIPPER based NoCs. It is shown in this work that the worst-case latency of packets is unbearably high when the above synchronization is followed. To alleviate this problem, broadcast bus NoC (BBus NoC approach is proposed in this work. The proposed method decreases the worst-case latency of packets by increasing the golden epoch rate of CHIPPER.

  9. The effects of inquiry-based summer enrichment activities on rising eighth graders' knowledge of science processes, attitude toward science, and perceptions of scientists

    Science.gov (United States)

    Moore, Juanita Martin

    The purpose of this research was to examine the effects of summer science enrichment on eighth-graders' science process skills knowledge, attitude toward science and perceptions of scientists. A single group pre- and post-test design was used to test participants in a summer science enrichment camp, which took place over a three-week period in the summer of 2000. Participants, all of whom were residents of the Mississippi area known as the Delta, lived on the campus of Mississippi Valley State University for the entire course of the camp. Activities included several guided inquiry-based projects such as water rocket design and solar or battery-powered car design. Participants also took trips to an environmental camp in north Mississippi and to the Stennis Space Center on the Mississippi Gulf Coast. Participants worked on their projects in groups, supervised by an undergraduate student "mentor". Participants were encouraged to keep journals of their experiences throughout the camp, and the researcher developed a rubric to evaluate student journals for process knowledge, evidence of planning, reflective thought, and disposition toward science. Tests were used to evaluate student knowledge of process skills, attitude toward science, and perceptions of scientists. On the Test of Integrated Process Skills (Dillashaw & Okey, 1983), the students showed significant improvement overall, but when evaluated separately, males showed significant improvement while females did not. On the Attitude toward Science in School Assessment (Germane, 1988), data indicated that attitude toward science improved significantly for the group as a whole, but upon closer inspection, indicated a significant improvement for the female students only. On Chamber's Draw-a-Scientist Test (1983), analysis of student drawings indicated no significant change in stereotypical images of scientists for the group overall. However, boys' scores indicated a significant improvement when analyzed separately

  10. High-performance thin-film-transistors based on semiconducting-enriched single-walled carbon nanotubes processed by electrical-breakdown strategy

    Energy Technology Data Exchange (ETDEWEB)

    Aïssa, B., E-mail: aissab@emt.inrs.ca [Centre Énergie, Matériaux et Télécommunications, INRS, 1650, boulevard Lionel-Boulet, Varennes, Quebec J3X 1S2 (Canada); Qatar Environment and Energy Research Institute (QEERI), Qatar Foundation, P.O. Box 5825, Doha (Qatar); Nedil, M. [Telebec Wireless Underground Communication Laboratory, UQAT, 675, 1" è" r" e Avenue, Val d’Or, Québec J9P 1Y3 (Canada); Habib, M.A. [Computer Sciences and Engineering Department, Yanbu University College, P.O. Box 30031 (Saudi Arabia); Abdul-Hafidh, E.H. [High Energy Physics Department, Yanbu University College, P.O. Box 30031 (Saudi Arabia); Rosei, F. [Centre Énergie, Matériaux et Télécommunications, INRS, 1650, boulevard Lionel-Boulet, Varennes, Quebec J3X 1S2 (Canada)

    2015-02-15

    Highlights: • We selectively burn metallic single wall carbon nanotubes (SWCNT) by electrical breakdown. • We successfully achieve a semiconducting enriched-SWCNT in TFT configuration. • High performance, like On/Off of 10{sup 5} and a subthreshold swing of 165 mV/decades were obtained. • After PMMA coating, the SWCNT–TFTs were found stables for more than 4 months. - Abstract: Over the past two decades, among remarkable variety of nanomaterials, single-walled carbon nanotubes (SWCNTs) remain the most intriguing and uniquely well suited materials for applications in high-performance electronics. The most advanced technologies require the ability to form purely semiconducting SWCNTs. Here, we report on our strategy based on the well known progressive electrical breakdown process that offer this capability and serves as highly efficient means for selectively removing metallic carbon nanotubes from electronically heterogeneous random networks, deposited on silicon substrates in a thin film transistor (TFT) configuration. We demonstrate the successful achievement of semiconducting enriched-SWCNT networks in TFT scheme that reach On/Off switching ratios of ∼100,000, on-conductance of 20 μS, and a subthreshold swing of less than 165 mV/decades. The obtained TFT devices were then protected with thin film poly(methyl methacrylate) (PMMA) to keep the percolation level of the SWCNTs network spatially and temporally stable, while protecting it from atmosphere exchanges. TFT devices were found to be air-stable and maintained their excellent characteristics in ambient atmosphere for more than 4 months. This approach could work as a platform for future nanotube-based nanoelectronics.

  11. High-performance thin-film-transistors based on semiconducting-enriched single-walled carbon nanotubes processed by electrical-breakdown strategy

    International Nuclear Information System (INIS)

    Highlights: • We selectively burn metallic single wall carbon nanotubes (SWCNT) by electrical breakdown. • We successfully achieve a semiconducting enriched-SWCNT in TFT configuration. • High performance, like On/Off of 105 and a subthreshold swing of 165 mV/decades were obtained. • After PMMA coating, the SWCNT–TFTs were found stables for more than 4 months. - Abstract: Over the past two decades, among remarkable variety of nanomaterials, single-walled carbon nanotubes (SWCNTs) remain the most intriguing and uniquely well suited materials for applications in high-performance electronics. The most advanced technologies require the ability to form purely semiconducting SWCNTs. Here, we report on our strategy based on the well known progressive electrical breakdown process that offer this capability and serves as highly efficient means for selectively removing metallic carbon nanotubes from electronically heterogeneous random networks, deposited on silicon substrates in a thin film transistor (TFT) configuration. We demonstrate the successful achievement of semiconducting enriched-SWCNT networks in TFT scheme that reach On/Off switching ratios of ∼100,000, on-conductance of 20 μS, and a subthreshold swing of less than 165 mV/decades. The obtained TFT devices were then protected with thin film poly(methyl methacrylate) (PMMA) to keep the percolation level of the SWCNTs network spatially and temporally stable, while protecting it from atmosphere exchanges. TFT devices were found to be air-stable and maintained their excellent characteristics in ambient atmosphere for more than 4 months. This approach could work as a platform for future nanotube-based nanoelectronics

  12. Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms

    OpenAIRE

    Liu, Jiemeng; Wang, Haifeng; Yang, Hongxing; Zhang, Yizhe; Wang, Jinfeng; Zhao, Fangqing; Qi, Ji

    2012-01-01

    Compared with traditional algorithms for long metagenomic sequence classification, characterizing microorganisms’ taxonomic and functional abundance based on tens of millions of very short reads are much more challenging. We describe an efficient composition and phylogeny-based algorithm [Metagenome Composition Vector (MetaCV)] to classify very short metagenomic reads (75–100 bp) into specific taxonomic and functional groups. We applied MetaCV to the Meta-HIT data (371-Gb 75-bp reads of 109 h...

  13. Background and Objective: Listeria monocytogenes is a bacterium transferred by foods and is the agent of many sporadic and epidemic diseases in humans. This study aimed to investigate the prevalence of L. monocytogenes and to determinine their antibiotic resistance profile in red meats. Material and Methods: this cross-sectional study was performed on 400 red meat samples obtained from industrial slaughterhouses placed in Kerman, Iran. First, the samples were enriched with Simultaneous Enrichment Broth (SEB, and then plated onto Palcam agar and Tryptic Soy Broth Yeast Extract Broth (TSAYE. After identification of the isolates based on biochemical tests and PCR, the isolates were checked for their antibiotic resistance profile using disk Diffusion Results: of 400 samples, 12 samples (3% were contaminated with different species of Listeria. Using PCR, hly gene was recognized in eight samples (2% of L. monocytogenes. Furthermore, there was a significant difference in isolation rate of lamb samples compared to cow ones. While all of the isolates were resistant to clindamycin, amikacin and chloramphenicol, they were sensitive to penicillin. Conclusion: in spite of low rate of infection in red meat samples in Kerman city, due to high risk of Listeria contamination in red meats, we recommend applying a routine screening to identify this bacterium in our county.

    Directory of Open Access Journals (Sweden)

    Kargar, M. (PhD

    2014-11-01

    Full Text Available Background and Objective: Listeria monocytogenes is a bacterium transferred by foods and is the agent of many sporadic and epidemic diseases in humans. This study aimed to investigate the prevalence of L. monocytogenes and to determinine their antibiotic resistance profile in red meats. Material and Methods: this cross-sectional study was performed on 400 red meat samples obtained from industrial slaughterhouses placed in Kerman, Iran. First, the samples were enriched with Simultaneous Enrichment Broth (SEB, and then plated onto Palcam agar and Tryptic Soy Broth Yeast Extract Broth (TSAYE. After identification of the isolates based on biochemical tests and PCR, the isolates were checked for their antibiotic resistance profile using disk Diffusion Results: of 400 samples, 12 samples (3% were contaminated with different species of Listeria. Using PCR, hly gene was recognized in eight samples (2% of L. monocytogenes. Furthermore, there was a significant difference in isolation rate of lamb samples compared to cow ones. While all of the isolates were resistant to clindamycin, amikacin and chloramphenicol, they were sensitive to penicillin. Conclusion: in spite of low rate of infection in red meat samples in Kerman city, due to high risk of Listeria contamination in red meats, we recommend applying a routine screening to identify this bacterium in our county

  14. Graph-based Methods for Orbit Classification

    Energy Technology Data Exchange (ETDEWEB)

    Bagherjeiran, A; Kamath, C

    2005-09-29

    An important step in the quest for low-cost fusion power is the ability to perform and analyze experiments in prototype fusion reactors. One of the tasks in the analysis of experimental data is the classification of orbits in Poincare plots. These plots are generated by the particles in a fusion reactor as they move within the toroidal device. In this paper, we describe the use of graph-based methods to extract features from orbits. These features are then used to classify the orbits into several categories. Our results show that existing machine learning algorithms are successful in classifying orbits with few points, a situation which can arise in data from experiments.

  15. Pose measurement method based on geometrical constraints

    Institute of Scientific and Technical Information of China (English)

    Zimiao Zhang; Changku Sun; Pengfei Sun; Peng Wang

    2011-01-01

    @@ The pose estimation method based on geometric constraints is studied.The coordinates of the five feature points in the camera coordinate system are calculated to obtain the pose of an object on the basis of the geometric constraints formed by the connective lines of the feature points and the coordinates of the feature points on the CCD image plane; during the solution process,the scaling and orthography projection model is used to approximate the perspective projection model.%The pose estimation method based on geometric constraints is studied. The coordinates of the five feature points in the camera coordinate system are calculated to obtain the pose of an object on the basis of the geometric constraints formed by the connective lines of the feature points and the coordinates of the feature points on the CCD image plane; during the solution process, the scaling and orthography projection model is used to approximate the perspective projection model. The initial values of the coordinates of the five feature points in the camera coordinate system are obtained to ensure the accuracy and convergence rate of the non-linear algorithm. In accordance with the perspective projection characteristics of the circular feature landmarks, we propose an approach that enables the iterative acquisition of accurate target poses through the correction of the perspective projection coordinates of the circular feature landmark centers. Experimental results show that the translation positioning accuracy reaches ±0.05 mm in the measurement range of 0-40 mm, and the rotation positioning accuracy reaches ±0.06° in the measurement range of 4°-60°.

  16. Uranium enrichment. Principles

    International Nuclear Information System (INIS)

    Uranium enrichment industry is a more than 60 years old history and has developed without practically no cost, efficiency or profit constraints. However, remarkable improvements have been accomplished since the Second World War and have led to the development of various competing processes which reflect the diversity of uranium compositions and of uranium needs. Content: 1 - general considerations: uranium isotopes, problem of uranium enrichment, first realizations (USA, Russia, Europe, Asia, other countries), present day situation, future needs and market evolution; 2 - principles of isotopic separation: processes classification (high or low enrichment), low elementary enrichment processes, equilibrium time, cascade star-up and monitoring, multi-isotopes case, uranium reprocessing; 3 - enrichment and proliferation. (J.S.)

  17. DNA enrichment approaches to identify unauthorized genetically modified organisms (GMOs).

    Science.gov (United States)

    Arulandhu, Alfred J; van Dijk, Jeroen P; Dobnik, David; Holst-Jensen, Arne; Shi, Jianxin; Zel, Jana; Kok, Esther J

    2016-07-01

    With the increased global production of different genetically modified (GM) plant varieties, chances increase that unauthorized GM organisms (UGMOs) may enter the food chain. At the same time, the detection of UGMOs is a challenging task because of the limited sequence information that will generally be available. PCR-based methods are available to detect and quantify known UGMOs in specific cases. If this approach is not feasible, DNA enrichment of the unknown adjacent sequences of known GMO elements is one way to detect the presence of UGMOs in a food or feed product. These enrichment approaches are also known as chromosome walking or gene walking (GW). In recent years, enrichment approaches have been coupled with next generation sequencing (NGS) analysis and implemented in, amongst others, the medical and microbiological fields. The present review will provide an overview of these approaches and an evaluation of their applicability in the identification of UGMOs in complex food or feed samples. PMID:27086015

  18. DNA enrichment approaches to identify unauthorized genetically modified organisms (GMOs).

    Science.gov (United States)

    Arulandhu, Alfred J; van Dijk, Jeroen P; Dobnik, David; Holst-Jensen, Arne; Shi, Jianxin; Zel, Jana; Kok, Esther J

    2016-07-01

    With the increased global production of different genetically modified (GM) plant varieties, chances increase that unauthorized GM organisms (UGMOs) may enter the food chain. At the same time, the detection of UGMOs is a challenging task because of the limited sequence information that will generally be available. PCR-based methods are available to detect and quantify known UGMOs in specific cases. If this approach is not feasible, DNA enrichment of the unknown adjacent sequences of known GMO elements is one way to detect the presence of UGMOs in a food or feed product. These enrichment approaches are also known as chromosome walking or gene walking (GW). In recent years, enrichment approaches have been coupled with next generation sequencing (NGS) analysis and implemented in, amongst others, the medical and microbiological fields. The present review will provide an overview of these approaches and an evaluation of their applicability in the identification of UGMOs in complex food or feed samples.

  19. A Generalized Method for Integrating Rule-based Knowledge into Inductive Methods Through Virtual Sample Creation

    CERN Document Server

    Iqbal, Ridwan Al

    2011-01-01

    Hybrid learning methods use theoretical knowledge of a domain and a set of classified examples to develop a method for classification. Methods that use domain knowledge have been shown to perform better than inductive learners. However, there is no general method to include domain knowledge into all inductive learning algorithms as all hybrid methods are highly specialized for a particular algorithm. We present an algorithm that will take domain knowledge in the form of propositional rules, generate artificial examples from the rules and also remove instances likely to be flawed. This enriched dataset then can be used by any learning algorithm. Experimental results of different scenarios are shown that demonstrate this method to be more effective than simple inductive learning.

  20. Preliminary investigations for technology assessment of /sup 99/Mo production from LEU (low enriched uranium) targets. [For production of /sup 99m/Tc; by different methods

    Energy Technology Data Exchange (ETDEWEB)

    Vandegrift, G.F.; Chaiko, D.J.; Heinrich, R.R.; Kucera, E.T.; Jensen, K.J.; Poa, D.S.; Varma, R.; Vissers, D.R.

    1986-11-01

    This paper presents the results of preliminary studies on the effects of substituting low enriched uranium (LEU) for highly enriched uranium (HEU) in targets for the production of fission product /sup 99/Mo. Issues that were addressed are: (1) purity and yield of the /sup 99/Mo//sup 99m/Tc product, (2) fabrication of LEU targets and related concerns, and (3) radioactive waste. Laboratory experimentation was part of the efforts for issues (1) and (2); thus far, radioactive waste disposal has only been addressed in a paper study. Although the reported results are still preliminary, there is reason to be optimistic about the feasibility of utilizing LEU targets for /sup 99/Mo production. 37 refs., 1 fig., 5 tabs.

  1. Formulation and characterization of a nutritional pumpkin-based whey beverages, enriched with oatmeal and passion fruit

    Directory of Open Access Journals (Sweden)

    Alex Valencia

    2015-12-01

    Full Text Available In this work, the effect on the addition of oatmeal (Avena sativa and passion fruit (Passiflora edulis in the content of fiber, calcium, iron, phosphorus and A vitamin in beverage formulation based on pumpkin (Cucurbita maxima, milk and whey, was determined. The beverages undergone significant changes during the storage time, the pH decreased as the acidity showed a slight increase. The coordinates of CIELAB (L *, a * and b * were located in quadrant 1 indicating a clear tendency to yellow caused by the presence of carotenoids from the pumpkin and passion fruit. Based on the sensory analysis it was selected best treatment who was higher in 3 of the 4 parameters evaluated. This sample also presented a pseudoplastic behavior with a consistency index of 3.57 Pa.s0.24 and a shelf life of 9 days

  2. Improving data management and dissemination in web based information systems by semantic enrichment of descriptive data aspects

    Science.gov (United States)

    Gebhardt, Steffen; Wehrmann, Thilo; Klinger, Verena; Schettler, Ingo; Huth, Juliane; Künzer, Claudia; Dech, Stefan

    2010-10-01

    The German-Vietnamese water-related information system for the Mekong Delta (WISDOM) project supports business processes in Integrated Water Resources Management in Vietnam. Multiple disciplines bring together earth and ground based observation themes, such as environmental monitoring, water management, demographics, economy, information technology, and infrastructural systems. This paper introduces the components of the web-based WISDOM system including data, logic and presentation tier. It focuses on the data models upon which the database management system is built, including techniques for tagging or linking metadata with the stored information. The model also uses ordered groupings of spatial, thematic and temporal reference objects to semantically tag datasets to enable fast data retrieval, such as finding all data in a specific administrative unit belonging to a specific theme. A spatial database extension is employed by the PostgreSQL database. This object-oriented database was chosen over a relational database to tag spatial objects to tabular data, improving the retrieval of census and observational data at regional, provincial, and local areas. While the spatial database hinders processing raster data, a "work-around" was built into WISDOM to permit efficient management of both raster and vector data. The data model also incorporates styling aspects of the spatial datasets through styled layer descriptions (SLD) and web mapping service (WMS) layer specifications, allowing retrieval of rendered maps. Metadata elements of the spatial data are based on the ISO19115 standard. XML structured information of the SLD and metadata are stored in an XML database. The data models and the data management system are robust for managing the large quantity of spatial objects, sensor observations, census and document data. The operational WISDOM information system prototype contains modules for data management, automatic data integration, and web services for data

  3. TRIGA low enrichment fuel

    International Nuclear Information System (INIS)

    Sixty TRIGA reactors have been sold and the earliest of these are now passing twenty years of operation. All of these reactors use the uranium-zirconium hydride fuel (UZrH) which provides certain unique advantages arising out of its large prompt negative temperature coefficient, very low fission product release, and high temperature capability. Eleven of these Sixty reactors are conversions from plate fuel to TRIGA fuel which were made as a result of these advantages. With only a few exceptions, TRIGA reactors have always used low-enriched-uranium (LEU) fuel with an enrichment of 19.9%. The exceptions have either been converted from the standard low-enriched fuel to the 70% enriched FLIP fuel in order to achieve extended lifetime, or are higher powered reactors which were designed for long life using 93%-enriched uranium during the time when the use and export of highly enriched uranium (HEU) was not restricted. The advent of international policies focusing attention on nonproliferation and safeguards made the HEU fuels obsolete. General Atomic immediately undertook a development effort (nearly two years ago) in order to be in a position to comply with these policies for all future export sales and also to provide a low-enriched alternative to fully enriched plate-type fuels. This important work was subsequently partially supported by the U.S. Department of Energy. The laboratory and production tests have shown that higher uranium densities can be achieved to compensate for reducing the enrichment to 20%, and that the fuels maintain the characteristics of the very thoroughly proven standard TRIGA fuels. In May of 1978, General Atomic announced that these fuels were available for TRIGA reactors and for plate-type reactors with power levels up to 15 MW with GA's standard commercial warranty

  4. TRIGA low enrichment fuel

    International Nuclear Information System (INIS)

    Sixty TRIGA reactors have been sold and the earliest of these are now passing twenty years of operation. All of these reactors use the uranium zirconium hydride fuel (UZrH) which provides certain unique advantages arising out of its large prompt negative temperature coefficient, very low fission product release, and high temperature capability. Eleven of these Sixty reactors are conversions from plate fuel to TRIGA fuel which were made as a result of these advantages. With only a few exceptions, TRIGA reactors have always used low-enriched uranium (LEU) fuel with an enrichment of 19.9%. The exceptions have either been converted from the standard low-enriched fuel to the 70% enriched FLIP fuel in order to achieve extended lifetime, or are higher powered reactors which were designed for long life using 93%-enriched uranium during the time when the use and export of highly enriched uranium (HEU) was not restricted. The advent of international policies focusing attention on nonproliferation and safeguards made the HEU fuels obsolete. General Atomic immediately undertook a development effort (nearly two years ago) in order to be in a position to comply with these policies for all future export sales and also to provide a low-enriched alternative to fully enriched plate-type fuels. This important work was subsequently partially supported by the U.S. Department of Energy. The laboratory and production tests have shown that higher uranium densities can be achieved to compensate for reducing the enrichment to 20%, and that the fuels maintain the characteristics of the very thoroughly proven standard TRIGA fuels. In May of 1978, General Atomic announced that these fuels were available for TRIGA reactors and for plate-type reactors with power levels up to 15 MW with General Atomic's standard commercial warranty

  5. The development of the MACE work-family enrichment instrument

    Directory of Open Access Journals (Sweden)

    Marissa de Klerk

    2013-03-01

    Full Text Available Orientation: An instrument based on a theoretical model is necessary to measure the positive side of the work-family interface.Research purpose: To develop items for measurement of work-family enrichment based on the elements contained within a theoretical model and to evaluate the latent trait functioning of these items.Motivation for the study: Major limitations exist regarding the conceptualisation and scale development of the positive side of the work-family interface.Research design, approach, and method: A quantitative research approach using scale development procedures was employed to develop the 95-item instrument. A cross-sectional survey design was used to collect data randomly from selected employees; data were processed using Rasch analysis.Main findings: The five-category scale works well for the most part, although a four-category scale could be considered. Thirty-five items either over-fitted or under-fitted the work-family enrichment model. Person ability was measured in the low to middle ranges of work-family enrichment. Participants’ experience of work-family enrichment could be represented accurately. Sub-scale items displayed misfit, bias or both.Practical/managerial implications: The developed instrument can be investigated further to identify work-family enrichment factors that can measure workers’ experience of enrichment in their work and family domains.Contribution/value-add: This study furthers theory building and empirical research in industrial psychology, by developing a new theory-based measuring instrument for the positive side of the work-family interface in the South African context. This study expanded on the model proposed by Greenhaus and Powell, by including all five categories of resources gains. Furthermore, the total of the resources was diversified, since some of the content of these resources encompasses multiple meanings.

  6. Region-based multisensor image fusion method

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Image fusion should consider the priori knowledge of the source images to be fused, such as the characteristics of the images and the goal of image fusion, that is to say, the knowledge about the input data and the application plays a crucial role. This paper is concerned on multiresolution (MR) image fusion. Considering the characteristics of the multisensor (SAR and FLIR etc) and the goal of fusion, which is to achieve one image in possession of the contours feature and the target region feature. It seems more meaningful to combine features rather than pixels. A multisensor image fusion scheme based on K-means cluster and steerable pyramid is presented. K-means cluster is used to segment out objects in FLIR images. The steerable pyramid is a multiresolution analysis method, which has a good property to extract contours information at different scales. Comparisons are made with the relevant existing techniques in the literature. The paper concludes with some examples to illustrate the efficiency of the proposed scheme.

  7. A Long PCR–Based Approach for DNA Enrichment Prior to Next-Generation Sequencing for Systematic Studies

    Directory of Open Access Journals (Sweden)

    Simon Uribe-Convers

    2014-01-01

    Full Text Available Premise of the study: We present an alternative approach for molecular systematic studies that combines long PCR and next-generation sequencing. Our approach can be used to generate templates from any DNA source for next-generation sequencing. Here we test our approach by amplifying complete chloroplast genomes, and we present a set of 58 potentially universal primers for angiosperms to do so. Additionally, this approach is likely to be particularly useful for nuclear and mitochondrial regions. Methods and Results: Chloroplast genomes of 30 species across angiosperms were amplified to test our approach. Amplification success varied depending on whether PCR conditions were optimized for a given taxon. To further test our approach, some amplicons were sequenced on an Illumina HiSeq 2000. Conclusions: Although here we tested this approach by sequencing plastomes, long PCR amplicons could be generated using DNA from any genome, expanding the possibilities of this approach for molecular systematic studies.

  8. A novel strategy for enrichment and isolation of osteoprogenitor cells from induced pluripotent stem cells based on surface marker combination.

    Directory of Open Access Journals (Sweden)

    Hiromi Ochiai-Shino

    Full Text Available In this study, we developed a new method to stimulate osteogenic differentiation in tissue-nonspecific alkaline phosphatase (TNAP-positive cells liberated from human induced pluripotent stem cells (hiPSCs-derived embryoid bodies (EBs with 14 days long TGF-β/IGF-1/FGF-2 treatment. TNAP is a marker protein of osteolineage cells. We analyzed and isolated TNAP-positive and E-cadherin-negative nonepithelial cells by fluorescence-activated cell sorting. Treating the cells with a combination of transforming growth factor (TGF-β, insulin-like growth factor (IGF-1, and fibroblast growth factor (FGF-2 for 14 days greatly enhanced TNAP expression and maximized expression frequency up to 77.3%. The isolated cells expressed high levels of osterix, which is an exclusive osteogenic marker. Culturing these TNAP-positive cells in osteoblast differentiation medium (OBM led to the expression of runt-related transcription factor 2, type I collagen, bone sialoprotein, and osteocalcin (OCN. These cells responded to treatment with activated vitamin D3 by upregulating OCN. Furthermore, in OBM they were capable of generating many mineralized nodules with strong expression of receptor activator of NF-kappaB ligand and sclerostin (SOST. Real-time RT-PCR showed a significant increase in the expression of osteocyte marker genes, including SOST, neuropeptide Y, and reelin. Scanning electron microscopy showed dendritic morphology. Examination of semi-thin toluidine blue-stained sections showed many interconnected dendrites. Thus, TNAP-positive cells cultured in OBM may eventually become terminally differentiated osteocyte-like cells. In conclusion, treating hiPSCs-derived cells with a combination of TGF-β, IGF-1, and FGF-2 generated TNAP-positive cells at high frequency. These TNAP-positive cells had a high osteogenic potential and could terminally differentiate into osteocyte-like cells. The method described here may reveal new pathways of osteogenesis and provide a novel

  9. Status of laser enrichment technology updated

    Science.gov (United States)

    Sakabe, Y.

    1986-08-01

    The principles of uranium enrichment by a laser method, the technology's current status and future prospects, centered on research and development activity at the Japan Atomic Energy Research Institute and the Institute of Physical and Chemical Research are described.

  10. Screening Key Genes Associated with the Development and Progression of Non-small Cell Lung Cancer Based on Gene-enrichment Analysis and Meta-analysis

    Directory of Open Access Journals (Sweden)

    Wenwu HE

    2012-07-01

    Full Text Available Background and objective Non-small cell lung cancer (NSCLC is one of the most common malignant tumors; however, its causes are still not completely understood. This study was designed to screen the key genes and pathways related to NSCLC occurrence and development and to establish the scientific foundation for the genetic mechanisms and targeted therapy of NSCLC. Methods Both gene set-enrichment analysis (GSEA and meta-analysis (meta were used to screen the critical pathways and genes that might be corretacted with the development and progression of lung cancer at the transcription level. Results Using the GSEA and meta methods, focal adhesion and regulation of actin cytoskeleton were determined to be the more prominent overlapping significant pathways. In the focal adhesion pathway, 31 genes were statistically significant (P<0.05, whereas in the regulation of actin cytoskeleton pathway, 32 genes were statistically significant (P<0.05. Conclusion The focal adhesion and the regulation of actin cytoskeleton pathways might play important roles in the occurrence and development of NSCLC. Further studies are needed to determine the biological function for the positiue genes.

  11. Development and characterization of a nanodendritic silver-based solid-phase extraction sorbent for selective enrichment of endocrine-disrupting chemicals in water and milk samples.

    Science.gov (United States)

    Gao, Yuanji; Xia, Bing; Liu, Jie; Ji, Baocheng; Ma, Fengwei; Ding, Lisheng; Li, Bangjing; Zhou, Yan

    2015-11-01

    In this study, 4-[4-phenylazo-phenoxy] butyl-1-thiol (AzSH) functionalized nanodendritic silver (AzS@AgNDs) materials were prepared as a solid-phase extraction (SPE) sorbent for the selective extraction of estrogens. AzS@AgNDs possess an extremely large surface-to-volume ratio and a small average particle size. The performance of the material was evaluated by selective enrichment of hexestrol, diethylstilbestrol, dienestrol and bisphenol A in water and milk samples followed by rapid ultra-performance liquid chromatography-electrospray ionization mass spectrometry (UPLC-ESI-MS) analyses. The results exhibited that AzS@AgNDs had excellent adsorption capability for the targeted estrogens. The limits of detection of the four estrogens ranged from 0.1 to 5.0 pg/mL. The recoveries of the estrogens spiked into tap water were over the range of 83.6-105.3% with relative standard deviations of 2.8-6.0%. The results indicated the capability of this method for the rapid determination of estrogens in milk and other environmental water samples. In addition, this method would be useful for the determination of human exposure and health risk assessments trace level of endocrine-disrupting compounds (EDCs) in drinking water.

  12. Triptycene-based ladder monomers and polymers, methods of making each, and methods of use

    KAUST Repository

    Pinnau, Ingo

    2015-02-05

    Embodiments of the present disclosure provide for a triptycene-based A-B monomer, a method of making a triptycene-based A-B monomer, a triptycene-based ladder polymer, a method of making a triptycene-based ladder polymers, a method of using triptycene-based ladder polymers, a structure incorporating triptycene-based ladder polymers, a method of gas separation, and the like.

  13. The Standardization Method of Address Information for POIs from Internet Based on Positional Relation

    Directory of Open Access Journals (Sweden)

    WANG Yong

    2016-05-01

    Full Text Available As points of interest (POIon the internet, exists widely incomplete addresses and inconsistent literal expressions, a fast standardization processing method of network POIs address information based on spatial constraints was proposed. Based on the model of the extensible address expression, first of all, address information of POI was segmented and extracted. Address elements are updated by means of matching with the address tree layer by layer. Then, by defining four types of positional relations, corresponding set are selected from standard POI library as candidate for enrichment and amendment of non-standard address. At last, the fast standardized processing of POI address information was achieved with the help of backtracking address elements with minimum granularity. Experiments in this paper proved that the standardization processing of an address can be realized by means of this method with higher accuracy in order to build the address database.

  14. An Evolution-Based Screen for Genetic Differentiation between Anopheles Sister Taxa Enriches for Detection of Functional Immune Factors.

    Directory of Open Access Journals (Sweden)

    Christian Mitri

    2015-12-01

    Full Text Available Nucleotide variation patterns across species are shaped by the processes of natural selection, including exposure to environmental pathogens. We examined patterns of genetic variation in two sister species, Anopheles gambiae and Anopheles coluzzii, both efficient natural vectors of human malaria in West Africa. We used the differentiation signature displayed by a known coordinate selective sweep of immune genes APL1 and TEP1 in A. coluzzii to design a population genetic screen trained on the sweep, classified a panel of 26 potential immune genes for concordance with the signature, and functionally tested their immune phenotypes. The screen results were strongly predictive for genes with protective immune phenotypes: genes meeting the screen criteria were significantly more likely to display a functional phenotype against malaria infection than genes not meeting the criteria (p = 0.0005. Thus, an evolution-based screen can efficiently prioritize candidate genes for labor-intensive downstream functional testing, and safely allow the elimination of genes not meeting the screen criteria. The suite of immune genes with characteristics similar to the APL1-TEP1 selective sweep appears to be more widespread in the A. coluzzii genome than previously recognized. The immune gene differentiation may be a consequence of adaptation of A. coluzzii to new pathogens encountered in its niche expansion during the separation from A. gambiae, although the role, if any of natural selection by Plasmodium is unknown. Application of the screen allowed identification of new functional immune factors, and assignment of new functions to known factors. We describe biochemical binding interactions between immune proteins that underlie functional activity for malaria infection, which highlights the interplay between pathogen specificity and the structure of immune complexes. We also find that most malaria-protective immune factors display phenotypes for either human or rodent

  15. An Evolution-Based Screen for Genetic Differentiation between Anopheles Sister Taxa Enriches for Detection of Functional Immune Factors.

    Science.gov (United States)

    Mitri, Christian; Bischoff, Emmanuel; Takashima, Eizo; Williams, Marni; Eiglmeier, Karin; Pain, Adrien; Guelbeogo, Wamdaogo M; Gneme, Awa; Brito-Fravallo, Emma; Holm, Inge; Lavazec, Catherine; Sagnon, N'Fale; Baxter, Richard H; Riehle, Michelle M; Vernick, Kenneth D

    2015-12-01

    Nucleotide variation patterns across species are shaped by the processes of natural selection, including exposure to environmental pathogens. We examined patterns of genetic variation in two sister species, Anopheles gambiae and Anopheles coluzzii, both efficient natural vectors of human malaria in West Africa. We used the differentiation signature displayed by a known coordinate selective sweep of immune genes APL1 and TEP1 in A. coluzzii to design a population genetic screen trained on the sweep, classified a panel of 26 potential immune genes for concordance with the signature, and functionally tested their immune phenotypes. The screen results were strongly predictive for genes with protective immune phenotypes: genes meeting the screen criteria were significantly more likely to display a functional phenotype against malaria infection than genes not meeting the criteria (p = 0.0005). Thus, an evolution-based screen can efficiently prioritize candidate genes for labor-intensive downstream functional testing, and safely allow the elimination of genes not meeting the screen criteria. The suite of immune genes with characteristics similar to the APL1-TEP1 selective sweep appears to be more widespread in the A. coluzzii genome than previously recognized. The immune gene differentiation may be a consequence of adaptation of A. coluzzii to new pathogens encountered in its niche expansion during the separation from A. gambiae, although the role, if any of natural selection by Plasmodium is unknown. Application of the screen allowed identification of new functional immune factors, and assignment of new functions to known factors. We describe biochemical binding interactions between immune proteins that underlie functional activity for malaria infection, which highlights the interplay between pathogen specificity and the structure of immune complexes. We also find that most malaria-protective immune factors display phenotypes for either human or rodent malaria, with

  16. Earthquake forecast enrichment scores

    Directory of Open Access Journals (Sweden)

    Christine Smyth

    2012-03-01

    Full Text Available The Collaboratory for the Study of Earthquake Predictability (CSEP is a global project aimed at testing earthquake forecast models in a fair environment. Various metrics are currently used to evaluate the submitted forecasts. However, the CSEP still lacks easily understandable metrics with which to rank the universal performance of the forecast models. In this research, we modify a well-known and respected metric from another statistical field, bioinformatics, to make it suitable for evaluating earthquake forecasts, such as those submitted to the CSEP initiative. The metric, originally called a gene-set enrichment score, is based on a Kolmogorov-Smirnov statistic. Our modified metric assesses if, over a certain time period, the forecast values at locations where earthquakes have occurred are significantly increased compared to the values for all locations where earthquakes did not occur. Permutation testing allows for a significance value to be placed upon the score. Unlike the metrics currently employed by the CSEP, the score places no assumption on the distribution of earthquake occurrence nor requires an arbitrary reference forecast. In this research, we apply the modified metric to simulated data and real forecast data to show it is a powerful and robust technique, capable of ranking competing earthquake forecasts.

  17. The Numerical Simulation of the Crack Elastoplastic Extension Based on the Extended Finite Element Method

    Directory of Open Access Journals (Sweden)

    Xia Xiaozhou

    2013-01-01

    Full Text Available In the frame of the extended finite element method, the exponent disconnected function is introduced to reflect the discontinuous characteristic of crack and the crack tip enrichment function which is made of triangular basis function, and the linear polar radius function is adopted to describe the displacement field distribution of elastoplastic crack tip. Where, the linear polar radius function form is chosen to decrease the singularity characteristic induced by the plastic yield zone of crack tip, and the triangle basis function form is adopted to describe the displacement distribution character with the polar angle of crack tip. Based on the displacement model containing the above enrichment displacement function, the increment iterative form of elastoplastic extended finite element method is deduced by virtual work principle. For nonuniform hardening material such as concrete, in order to avoid the nonsymmetry characteristic of stiffness matrix induced by the non-associate flowing of plastic strain, the plastic flowing rule containing cross item based on the least energy dissipation principle is adopted. Finally, some numerical examples show that the elastoplastic X-FEM constructed in this paper is of validity.

  18. Enrichment technology. Dependable vendor of gas centrifuges

    International Nuclear Information System (INIS)

    Enrichment Technology is an innovative, high-tech company that develops, manufactures and installs gas centrifuges for enriching uranium. In addition, Enrichment Technology designs enrichment plants that use gas centrifuge technology. This technology offers the most efficient and cost-effective method for enriching uranium yet: high-performance, safe technology that dominates the market with a global share of 45 percent. A determining factor in Enrichment Technology's success is its mission: supplying its customers with safe, reliable technology. Production of the centrifuges requires versatile know-how and collaboration between different departments as well as interdisciplinary teams at the various sites. More than 2000 operators at 8 sites in 5 countries contribute their individual knowledge and personal skills in order to produce this exceptional technology. The head office is in Beaconsfield near London and the operational headquarters are in Almelo in the Netherlands. There are other sites in Germany (Juelich und Gronau), Great Britain (Capenhurst) as well as project sites in the USA and France. Capenhurst is where experienced engineers design new enrichment plants and organise their construction. Centrifuge components are manufactured in Almelo and Juelich, while the pipework needed to connect up the centrifuges is produced at the site in Gronau. In Juelich, highly qualified scientists in interdisciplinary teams are continuously researching ways of improving the current centrifuges. Communication between specialists in the fields of chemistry, physics and engineering forms the basis for the company's success and the key to extending this leading position in the global enrichment market. (orig.)

  19. Active interrogation of highly enriched uranium

    Science.gov (United States)

    Fairrow, Nannette Lea

    Safeguarding special nuclear material (SNM) in the Department of Energy Complex is vital to the national security of the United States. Active and passive nondestructive assays are used to confirm the presence of SNM in various configurations ranging from waste to nuclear weapons. Confirmation measurements for nuclear weapons are more challenging because the design complicates the detection of a distinct signal for highly enriched uranium. The emphasis of this dissertation was to investigate a new nondestructive assay technique that provides an independent and distinct signal to confirm the presence of highly enriched uranium (HEU). Once completed and tested this assay method could be applied to confirmation measurements of nuclear weapons. The new system uses a 14-MeV neutron source for interrogation and records the arrival time of neutrons between the pulses with a high efficiency detection system. The data is then analyzed by the Feynman reduced variance method. The analysis determined the amount of correlation in the data and provided a unique signature of correlated fission neutrons. Measurements of HEU spheres were conducted at Los Alamos with the new system. Then, Monte Carlo calculations were performed to verify hypothesis made about the behavior of the neutrons in the experiment. Comparisons of calculated counting rates by the Monte Carlo N-Particle Transport Code (MCNP) were made with the experimental data to confirm that the measured response reflected the desired behavior of neutron interactions in the highly enriched uranium. In addition, MCNP calculations of the delayed neutron build-up were compared with the measured data. Based on the results obtained from this dissertation, this measurement method has the potential to be expanded to include mass determinations of highly enriched uranium. Although many safeguards techniques exist for measuring special nuclear material, the number of assays that can be used to confirm HEU in shielded systems is

  20. New deghosting method based on generalized triangulation

    Institute of Scientific and Technical Information of China (English)

    Bai Jing; Wang Guohong; Xiu Jianjuan; Wang Xiaobo

    2009-01-01

    A new deghosting method baaed on the generalized triangulation is presented. First, two intersection points corresponding to the emitter position are obtained by utilizing two azimuth angles and two elevation angles from two jammed 3-D radars (or 2-D passive sensors). Then, hypothesis testing baaed deghosting method in the multiple target scenarios is proposed using the two intersection points. In order to analyze the performance of the proposed method, the correct association probability of the true targets and the incorrect association probability of the ghost targets are defined. Finally, the Monte Carlo simulations are given for the proposed method compared with the hinge angle method in the cases of both two and three radars. The simulation results show that the proposed method has better performance than the hinge angle method in three radars case.

  1. ProbCD: enrichment analysis accounting for categorization uncertainty

    Directory of Open Access Journals (Sweden)

    Shmulevich Ilya

    2007-10-01

    Full Text Available Abstract Background As in many other areas of science, systems biology makes extensive use of statistical association and significance estimates in contingency tables, a type of categorical data analysis known in this field as enrichment (also over-representation or enhancement analysis. In spite of efforts to create probabilistic annotations, especially in the Gene Ontology context, or to deal with uncertainty in high throughput-based datasets, current enrichment methods largely ignore this probabilistic information since they are mainly based on variants of the Fisher Exact Test. Results We developed an open-source R-based software to deal with probabilistic categorical data analysis, ProbCD, that does not require a static contingency table. The contingency table for the enrichment problem is built using the expectation of a Bernoulli Scheme stochastic process given the categorization probabilities. An on-line interface was created to allow usage by non-programmers and is available at: http://xerad.systemsbiology.net/ProbCD/. Conclusion We present an analysis framework and software tools to address the issue of uncertainty in categorical data analysis. In particular, concerning the enrichment analysis, ProbCD can accommodate: (i the stochastic nature of the high-throughput experimental techniques and (ii probabilistic gene annotation.

  2. Evaluation of DNA Extraction Methods Suitable for PCR-based Detection and Genotyping of Clostridium botulinum

    DEFF Research Database (Denmark)

    Auricchio, Bruna; Anniballi, Fabrizio; Fiore, Alfonsina;

    2013-01-01

    in terms of cost, time, labor, and supplies. Eleven botulinum toxin–producing clostridia strains and 25 samples (10 food, 13 clinical, and 2 environmental samples) naturally contaminated with botulinum toxin–producing clostridia were used to compare 4 DNA extraction procedures: Chelex® 100 matrix, Phenol......-Cloroform-Isoamyl alcohol, NucliSENS® magnetic extraction kit, and DNeasy® Blood & Tissue kit. Integrity, purity, and amount of amplifiable DNA were evaluated. The results show that the DNeasy® Blood & Tissue kit is the best extraction method evaluated because it provided the most pure, intact, and amplifiable DNA. However.......05) with respect to the best method, no lack of PCR amplification was shown. In addition, molecular methods for laboratory diagnosis currently are based on a microbial enrichment step prior to PCR, and so the differences in amplification seem to not influence the analytical results....

  3. Mixed hemimicelles solid-phase extraction based on sodium dodecyl sulfate-coated nano-magnets for selective adsorption and enrichment of illegal cationic dyes in food matrices prior to high-performance liquid chromatography-diode array detection detection.

    Science.gov (United States)

    Qi, Ping; Liang, Zhi-an; Wang, Yu; Xiao, Jian; Liu, Jia; Zhou, Qing-qiong; Zheng, Chun-hao; Luo, Li-Ni; Lin, Zi-hao; Zhu, Fang; Zhang, Xue-wu

    2016-03-11

    In this study, mixed hemimicelles solid-phase extraction (MHSPE) based on sodium dodecyl sulfate (SDS) coated nano-magnets Fe3O4 was investigated as a novel method for the extraction and separation of four banned cationic dyes, Auramine O, Rhodamine B, Basic orange 21 and Basic orange 22, in condiments prior to HPLC detection. The main factors affecting the extraction of analysts, such as pH, surfactant and adsorbent concentrations and zeta potential were studied and optimized. Under optimized conditions, the proposed method was successful applied for the analysis of banned cationic dyes in food samples such as chili sauce, soybean paste and tomato sauce. Validation data showed the good recoveries in the range of 70.1-104.5%, with relative standard deviations less than 15%. The method limits of determination/quantification were in the range of 0.2-0.9 and 0.7-3μgkg(-1), respectively. The selective adsorption and enrichment of cationic dyes were achieved by the synergistic effects of hydrophobic interactions and electrostatic attraction between mixed hemimicelles and the cationic dyes, which also resulted in the removal of natural pigments interferences from sample extracts. When applied to real samples, RB was detected in several positive samples (chili powders) within the range from 0.042 to 0.177mgkg(-1). These results indicate that magnetic MHSPE is an efficient and selective sample preparation technique for the extraction of banned cationic dyes in a complex matrix. PMID:26877180

  4. An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes.

    Directory of Open Access Journals (Sweden)

    Xin Jin

    Full Text Available Non-human primates have emerged as an important resource for the study of human disease and evolution. The characterization of genomic variation between and within non-human primate species could advance the development of genetically defined non-human primate disease models. However, non-human primate specific reagents that would expedite such research, such as exon-capture tools, are lacking. We evaluated the efficiency of using a human exome capture design for the selective enrichment of exonic regions of non-human primates. We compared the exon sequence recovery in nine chimpanzees, two crab-eating macaques and eight Japanese macaques. Over 91% of the target regions were captured in the non-human primate samples, although the specificity of the capture decreased as evolutionary divergence from humans increased. Both intra-specific and inter-specific DNA variants were identified; Sanger-based resequencing validated 85.4% of 41 randomly selected SNPs. Among the short indels identified, a majority (54.6%-77.3% of the variants resulted in a change of 3 base pairs, consistent with expectations for a selection against frame shift mutations. Taken together, these findings indicate that use of a human design exon-capture array can provide efficient enrichment of non-human primate gene regions. Accordingly, use of the human exon-capture methods provides an attractive, cost-effective approach for the comparative analysis of non-human primate genomes, including gene-based DNA variant discovery.

  5. Deuterium enrichment of interstellar dusts

    Science.gov (United States)

    Das, Ankan; Chakrabarti, Sandip Kumar; Majumdar, Liton; Sahu, Dipen

    2016-07-01

    High abundance of some abundant and simple interstellar species could be explained by considering the chemistry that occurs on interstellar dusts. Because of its simplicity, the rate equation method is widely used to study the surface chemistry. However, because the recombination efficiency for the formation of any surface species is highly dependent on various physical and chemical parameters, the Monte Carlo method is best suited for addressing the randomness of the processes. We carry out Monte-Carlo simulation to study deuterium enrichment of interstellar grain mantle under various physical conditions. Based on the physical properties, various types of clouds are considered. We find that in diffuse cloud regions, very strong radiation fields persists and hardly a few layers of surface species are formed. In translucent cloud regions with a moderate radiation field, significant number of layers would be produced and surface coverage is mainly dominated by photo-dissociation products such as, C, CH_3, CH_2D, OH and OD. In the intermediate dense cloud regions (having number density of total hydrogen nuclei in all forms ˜2 × 10^4 cm^{-3}), water and methanol along with their deuterated derivatives are efficiently formed. For much higher density regions (˜10^6 cm^{-3}), water and methanol productions are suppressed but surface coverage of CO, CO_2, O_2, O_3 are dramatically increased. We find a very high degree of fractionation of water and methanol. Observational results support a high fractionation of methanol but surprisingly water fractionation is found to be low. This is in contradiction with our model results indicating alternative routes for de-fractionation of water.

  6. Direct Measurement of Initial Enrichment and Burn-up of Spent Fuel Assembly with a Differential Die-Away Technique Based Instrument

    Energy Technology Data Exchange (ETDEWEB)

    Henzl, Vladimir [Los Alamos National Laboratory; Swinhoe, Martyn T. [Los Alamos National Laboratory; Tobin, Stephen J. [Los Alamos National Laboratory

    2012-07-16

    A key objective of the Next Generation Safeguards Initiative (NGSI) is to utilize non-destructive assay (NDA) techniques to determine the elemental plutonium (Pu) content in a commercial-grade nuclear spent fuel assembly (SFA). In the third year of the NGSI Spent Fuel NDA project, the research focus is on the integration of a few NDA techniques. One of the reoccurring challenges to the accurate determination of Pu content has been the explicit dependence of the measured signal on the presence of neutron absorbers which build up in the assembly in accordance with its operating and irradiation history. The history of any SFA is often summarized by the parameters of burn-up (BU), initial enrichment (IE) and cooling time (CT). While such parameters can typically be provided by the operator, the ability to directly measure and verify them would significantly enhance the autonomy of the IAEA inspectorate. Within this paper, we demonstrate that an instrument based on a Differential Die-Away technique is in principle capable of direct measurement of IE and, should the CT be known, also the BU.

  7. A novel method to identify pathways associated with renal cell carcinoma based on a gene co-expression network.

    Science.gov (United States)

    Ruan, Xiyun; Li, Hongyun; Liu, Bo; Chen, Jie; Zhang, Shibao; Sun, Zeqiang; Liu, Shuangqing; Sun, Fahai; Liu, Qingyong

    2015-08-01

    The aim of the present study was to develop a novel method for identifying pathways associated with renal cell carcinoma (RCC) based on a gene co-expression network. A framework was established where a co-expression network was derived from the database as well as various co-expression approaches. First, the backbone of the network based on differentially expressed (DE) genes between RCC patients and normal controls was constructed by the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database. The differentially co-expressed links were detected by Pearson's correlation, the empirical Bayesian (EB) approach and Weighted Gene Co-expression Network Analysis (WGCNA). The co-expressed gene pairs were merged by a rank-based algorithm. We obtained 842; 371; 2,883 and 1,595 co-expressed gene pairs from the co-expression networks of the STRING database, Pearson's correlation EB method and WGCNA, respectively. Two hundred and eighty-one differentially co-expressed (DC) gene pairs were obtained from the merged network using this novel method. Pathway enrichment analysis based on the Kyoto Encyclopedia of Genes and Genomes (KEGG) database and the network enrichment analysis (NEA) method were performed to verify feasibility of the merged method. Results of the KEGG and NEA pathway analyses showed that the network was associated with RCC. The suggested method was computationally efficient to identify pathways associated with RCC and has been identified as a useful complement to traditional co-expression analysis. PMID:26058425

  8. A Novel Method For Speech Segmentation Based On Speakers' Characteristics

    CERN Document Server

    Abdolali, Behrouz; 10.5121/sipij.2012.3205

    2012-01-01

    Speech Segmentation is the process change point detection for partitioning an input audio stream into regions each of which corresponds to only one audio source or one speaker. One application of this system is in Speaker Diarization systems. There are several methods for speaker segmentation; however, most of the Speaker Diarization Systems use BIC-based Segmentation methods. The main goal of this paper is to propose a new method for speaker segmentation with higher speed than the current methods - e.g. BIC - and acceptable accuracy. Our proposed method is based on the pitch frequency of the speech. The accuracy of this method is similar to the accuracy of common speaker segmentation methods. However, its computation cost is much less than theirs. We show that our method is about 2.4 times faster than the BIC-based method, while the average accuracy of pitch-based method is slightly higher than that of the BIC-based method.

  9. Enrichment: Dealing with overcapacity

    International Nuclear Information System (INIS)

    Today's surplus of enrichment capacity will continue until at least the end of this century. This will challenge the ingenuity of the separative work unit (SWU) suppliers as they attempt to keep market share and remain profitable in a very competitive marketplace. The utilities will be faced with attractive choices, but making the best choice will require careful analysis and increased attention to market factors. Current demand projections will probably prove too high to the extent that more reactors are canceled or delayed. The DOE has the vast majority of the unused capacity, so it will feel the most immediate impact of this large surplus in productive capacity. The DOE has responded to these market challenges by planning another reorganization of its enriching operations. Without a major agreement among the governments affected by the current surplus in enrichment capacity, the future will see lower prices, more competitive terms, and the gradual substitution of centrifuge or laser enrichment for the gaseous diffusion plants. The competition that is forcing the gaseous diffusion prices down to marginal cost will provide the long-term price basis for the enrichment industry

  10. Melting curve analysis after T allele enrichment (MelcaTle as a highly sensitive and reliable method for detecting the JAK2V617F mutation.

    Directory of Open Access Journals (Sweden)

    Soji Morishita

    Full Text Available Detection of the JAK2V617F mutation is essential for diagnosing patients with classical myeloproliferative neoplasms (MPNs. However, detection of the low-frequency JAK2V617F mutation is a challenging task due to the necessity of discriminating between true-positive and false-positive results. Here, we have developed a highly sensitive and accurate assay for the detection of JAK2V617F and named it melting curve analysis after T allele enrichment (MelcaTle. MelcaTle comprises three steps: 1 two cycles of JAK2V617F allele enrichment by PCR amplification followed by BsaXI digestion, 2 selective amplification of the JAK2V617F allele in the presence of a bridged nucleic acid (BNA probe, and 3 a melting curve assay using a BODIPY-FL-labeled oligonucleotide. Using this assay, we successfully detected nearly a single copy of the JAK2V617F allele, without false-positive signals, using 10 ng of genomic DNA standard. Furthermore, MelcaTle showed no positive signals in 90 assays screening healthy individuals for JAK2V617F. When applying MelcaTle to 27 patients who were initially classified as JAK2V617F-positive on the basis of allele-specific PCR analysis and were thus suspected as having MPNs, we found that two of the patients were actually JAK2V617F-negative. A more careful clinical data analysis revealed that these two patients had developed transient erythrocytosis of unknown etiology but not polycythemia vera, a subtype of MPNs. These findings indicate that the newly developed MelcaTle assay should markedly improve the diagnosis of JAK2V617F-positive MPNs.

  11. Preparation of stir cake sorptive extraction based on polymeric ionic liquid for the enrichment of benzimidazole anthelmintics in water, honey and milk samples.

    Science.gov (United States)

    Wang, Yulei; Zhang, Jie; Huang, Xiaojia; Yuan, Dongxing

    2014-08-20

    In this work, a new stir cake sorptive extraction (SCSE) using polymeric ionic liquid monolith as sorbent was prepared. The sorbent was obtained by in situ copolymerization of an ionic liquid, 1-allyl-3-methylimidazolium bis[(trifluoro methyl)sulfonyl]imide (AMII) and divinylbenzene (DB) in the presence of N,N-dimethylformamide. The influence of the content of ionic liquid and the porogen in the polymerization mixture on extraction performance was studied thoroughly. The physicochemical properties of the polymeric ionic liquid were characterized by infrared spectroscopy, elemental analysis, scanning electron microscopy and mercury intrusion porosimetry. The usefulness of SCSE-AMIIDB was demonstrated by the enrichment of trace benzimidazole anthelmintics. Several parameters affecting the extraction efficiency were investigated, and under the optimized conditions, a simple and effective method for the determination of trace benzimidazoles residues in water, milk and honey samples was established by coupling SCSE-AMIIDB with high performance liquid chromatography/diode array detection (SCSE-AMIIDB-HPLC/DAD). Results indicated that the limits of detection (S/N=3) for target compounds were 0.020-0.072 μg L(-1), 0.035-0.10 μg L(-1) and 0.026-0.076 μg L(-1) in water, milk and honey samples, respectively. In addition, an acceptable reproducibility was achieved by evaluating the repeatability and intermediate precision with relative standard deviations (RSD) of less than 9% and 11%, respectively. Finally, the established AMII-SCSE-HPLC/DAD method was successfully applied for the determination of benzimidazoles residues in milk, honey and environmental water samples. Recoveries obtained for the determination of benzimidazole anthelmintics in spiking samples ranged from 70.2% to 117.6%, with RSD below 12% in all cases.

  12. Model-based methods for linkage analysis.

    Science.gov (United States)

    Rice, John P; Saccone, Nancy L; Corbett, Jonathan

    2008-01-01

    The logarithm of an odds ratio (LOD) score method originated in a seminal article by Newton Morton in 1955. The method is broadly concerned with issues of power and the posterior probability of linkage, ensuring that a reported linkage has a high probability of being a true linkage. In addition, the method is sequential so that pedigrees or LOD curves may be combined from published reports to pool data for analysis. This approach has been remarkably successful for 50 years in identifying disease genes for Mendelian disorders. After discussing these issues, we consider the situation for complex disorders where the maximum LOD score statistic shares some of the advantages of the traditional LOD score approach, but is limited by unknown power and the lack of sharing of the primary data needed to optimally combine analytic results. We may still learn from the LOD score method as we explore new methods in molecular biology and genetic analysis to utilize the complete human DNA sequence and the cataloging of all human genes.

  13. New ITF measure method based on fringes

    Science.gov (United States)

    Fang, Qiaoran; Liu, Shijie; Gao, Wanrong; Zhou, You; Liu, HuanHuan

    2016-01-01

    With the unprecedented developments of the intense laser and aerospace projects', the interferometer is widely used in detecting middle frequency indicators of the optical elements, which put forward very high request towards the interferometer system transfer function (ITF). Conventionally, the ITF is measured by comparing the power spectra of known phase objects such as high-quality phase step. However, the fabrication of phase step is complex and high-cost, especially in the measurement of large-aperture interferometer. In this paper, a new fringe method is proposed to measure the ITF without additional objects. The frequency was changed by adjusting the number of fringes, and the normalized transfer function value was measured at different frequencies. The ITF value measured by fringe method was consistent with the traditional phase step method, which confirms the feasibility of proposed method. Moreover, the measurement error caused by defocus was analyzed. The proposed method does not require the preparation of a step artifact, which greatly reduces the test cost, and is of great significance to the ITF measurement of large aperture interferometer.

  14. The Low Chamber Pancreatic Cancer Cells Had Stem-Like Characteristics in Modified Transwell System: Is It a Novel Method to Identify and Enrich Cancer Stem-Like Cells?

    Directory of Open Access Journals (Sweden)

    Dongqing Wang

    2014-01-01

    Full Text Available Cancer stem cells (CSCs or cancer-initiating cells (CICs play an important role in tumor initiation, progression, metastasis, chemoresistance, and recurrence. It is important to construct an effective method to identify and isolate CSCs for biotherapy of cancer. During the past years, many researchers had paid more attention to it; however, this method was still on seeking. Therefore, compared to the former methods that were used to isolate the cancer stem cell, in the present study, we tried to use modified transwell system to isolate and enrich CSCs from human pancreatic cancer cell lines (Panc-1. Our results clearly showed that the lower chamber cells in modified transwell system were easily forming spheres; furthermore, these spheres expressed high levels of stem cell markers (CD133/CD44/CD24/Oct-4/ESA and exhibited chemoresistance, underwent epithelial-to-mesenchymal transition (EMT, and possessed the properties of self-renewal in vitro and tumorigenicity in vivo. Therefore, we speculated that modified transwell assay system, as a rapid and effective method, can be used to isolate and enrich CSCs.

  15. AN EVEN COMPONENT BASED FACE RECOGNITION METHOD

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    This paper presents a novel face recognition algorithm. To provide additional variations to training data set, even-odd decomposition is adopted, and only the even components (half-even face images) are used for further processing. To tackle with shift-variant problem,Fourier transform is applied to half-even face images. To reduce the dimension of an image,PCA (Principle Component Analysis) features are extracted from the amplitude spectrum of half-even face images. Finally, nearest neighbor classifier is employed for the task of classification. Experimental results on ORL database show that the proposed method outperforms in terms of accuracy the conventional eigenface method which applies PCA on original images and the eigenface method which uses both the original images and their mirror images as training set.

  16. LEVEL SET METHODS BASED ON DISTANCE FUNCTION

    Institute of Scientific and Technical Information of China (English)

    王德军; 唐云; 于洪川; 唐泽圣

    2003-01-01

    Some basic problems on the level set methods were discussed, such as the method used to preserve the distance function, the existence and uniqueness of solution for the level set equations. The main contribution is to prove that in a neighborhood of the initial zero level set, the level set equations with the restriction of the distance function have a unique solution, which must be the signed distance function with respect to the evolving surface. Some skillful approaches were used: Noticing that any solution for the original equation was a distance function, the original level set equations were transformed into a simpler alternative form. Moreover, since the new system was not a classical one, the system was transforned into an ordinary one, for which the implicit function method was adopted.

  17. Oxygen enrichment incineration

    International Nuclear Information System (INIS)

    Oxygen enriched combustion technology has recently been used in waste incineration. To apply the oxygen enrichment on alpha-bearing waste incineration, which is being developed, a state-of-an-art review has been performed. The use of oxygen or oxygen-enriched air instead of air in incineration would result in increase of combustion efficiency and capacity, and reduction of off-gas product. Especially, the off-gas could be reduced below a quarter, which might reduce off-gas treatment facilities, and also increase an efficiency of off-gas treatment. However, the use of oxygen might also lead to local overheating and high nitrogen oxides (NOx) formation. To overcome these problems, an application of low NOx oxy-fuel burner and recycling of a part of off-gas to combustion chamber have been suggested

  18. Oxygen enrichment incineration

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jeong Guk; Yang, Hee Chul; Park, Geun Il; Kim, Joon Hyung

    2000-10-01

    Oxygen enriched combustion technology has recently been used in waste incineration. To apply the oxygen enrichment on alpha-bearing waste incineration, which is being developed, a state-of-an-art review has been performed. The use of oxygen or oxygen-enriched air instead of air in incineration would result in increase of combustion efficiency and capacity, and reduction of off-gas product. Especially, the off-gas could be reduced below a quarter, which might reduce off-gas treatment facilities, and also increase an efficiency of off-gas treatment. However, the use of oxygen might also lead to local overheating and high nitrogen oxides (NOx) formation. To overcome these problems, an application of low NOx oxy-fuel burner and recycling of a part of off-gas to combustion chamber have been suggested.

  19. Valuing Convertible Bonds Based on LSRQM Method

    Directory of Open Access Journals (Sweden)

    Jian Liu

    2014-01-01

    Full Text Available Convertible bonds are one of the essential financial products for corporate finance, while the pricing theory is the key problem to the theoretical research of convertible bonds. This paper demonstrates how to price convertible bonds with call and put provisions using Least-Squares Randomized Quasi-Monte Carlo (LSRQM method. We consider the financial market with stochastic interest rates and credit risk and present a detailed description on calculating steps of convertible bonds value. The empirical results show that the model fits well the market prices of convertible bonds in China’s market and the LSRQM method is effective.

  20. A numerical method based on probability theory

    Institute of Scientific and Technical Information of China (English)

    唐立; 邹捷中; 杨文胜

    2003-01-01

    By using the connections between Brownian family with drift and elliptic differential equations, an efficient probabilistic computing method is given. This method is applied to a wide-range Diriehlet problem. Detail analysis and deduction of solving the problem are offered. The stochastic representation of the solution to the problem makes a 3-dimensional problem turned into a 2-dimensional problem. And an auxiliary ball is constructed. The strong Markov property and the joint distributions of the time and place of hitting spheres for Brownian family with drift are employed. Finally, good convergence of the numerical solution to the problem over domain with arbitrary boundary is obtained.

  1. Principle of Advance Detection of Water-enriched Body with Mine Transient Electromagnetic Method and Its Application%矿井瞬变电磁法富水体超前探测原理及应用研究

    Institute of Scientific and Technical Information of China (English)

    李云波; 李好

    2013-01-01

      由于对煤矿工作面顶底板和掘进工作面前方富水构造情况不清,导致近年来煤矿井下水害频发。介绍了矿井瞬变电磁法超前探测原理、井下探测工艺、数据采集和资料处理流程,总结出富水异常体解释和划分方法。应用YCS40矿用本安型瞬变电磁观测系统对霍州煤电集团文明煤矿掘进工作面进行了超前探测研究,结果表明矿井瞬变电磁法能够比较准确地预报掘进工作面前方100 m内的富水异常体。%The unclear water-enriched structure in the roof and floor strata of the coal face and in front of the heading face led to the frequent occurrence of mine water disasters in recent years. This paper described the advance detection principle, underground detection technology,data acquisition and data processing of the mine transient electromagnetic method and summarized the explanation and classification methods of the abnormal water-enriched body. The advance detection research was carried out with YCS40 transient electromagnetic observation system in Wenming Mine of Huozhou Coal Electricity Group Co. , Ltd. ,and research results showed that the use of the mine transient electromagnetic method can more accurately predict the water-enriched anomaly in 10m range in front of the heading face.

  2. LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights.

    Science.gov (United States)

    Dong, Xinran; Hao, Yun; Wang, Xiao; Tian, Weidong

    2016-01-11

    Pathway or gene set over-representation analysis (ORA) has become a routine task in functional genomics studies. However, currently widely used ORA tools employ statistical methods such as Fisher's exact test that reduce a pathway into a list of genes, ignoring the constitutive functional non-equivalent roles of genes and the complex gene-gene interactions. Here, we develop a novel method named LEGO (functional Link Enrichment of Gene Ontology or gene sets) that takes into consideration these two types of information by incorporating network-based gene weights in ORA analysis. In three benchmarks, LEGO achieves better performance than Fisher and three other network-based methods. To further evaluate LEGO's usefulness, we compare LEGO with five gene expression-based and three pathway topology-based methods using a benchmark of 34 disease gene expression datasets compiled by a recent publication, and show that LEGO is among the top-ranked methods in terms of both sensitivity and prioritization for detecting target KEGG pathways. In addition, we develop a cluster-and-filter approach to reduce the redundancy among the enriched gene sets, making the results more interpretable to biologists. Finally, we apply LEGO to two lists of autism genes, and identify relevant gene sets to autism that could not be found by Fisher.

  3. HMM-Based Gene Annotation Methods

    Energy Technology Data Exchange (ETDEWEB)

    Haussler, David; Hughey, Richard; Karplus, Keven

    1999-09-20

    Development of new statistical methods and computational tools to identify genes in human genomic DNA, and to provide clues to their functions by identifying features such as transcription factor binding sites, tissue, specific expression and splicing patterns, and remove homologies at the protein level with genes of known function.

  4. Segal Enriched Categories I

    CERN Document Server

    Bacard, Hugo V

    2010-01-01

    We develop a theory of enriched categories over a (higher) category M equipped with a class W of morphisms called homotopy equivalences. We call them Segal M_W -categories. Our motivation was to generalize the notion of "up-to-homotopy monoids" in a monoidal category M, introduced by Leinster. The formalism adopted generalizes the classical Segal categories and extends the theory of enriched category over a bicategory. In particular we have a linear version of Segal categories which did not exist so far. Our goal in this paper is to present the theory and provide some examples. Applications are reserved for the future.

  5. Advanced uranium enrichment processes

    International Nuclear Information System (INIS)

    Three advanced Uranium enrichment processes are dealt with in the report: AVLIS (Atomic Vapour LASER Isotope Separation), MLIS (Molecular LASER Isotope Separation) and PSP (Plasma Separation Process). The description of the physical and technical features of the processes constitutes a major part of the report. If further presents comparisons with existing industrially used enrichment technologies, gives information on actual development programmes and budgets and ends with a chapter on perspectives and conclusions. An extensive bibliography of the relevant open literature is added to the different subjects discussed. The report was drawn up by the nuclear research Centre (CEA) Saclay on behalf of the Commission of the European Communities

  6. Diffusion-based separation methods: dry distillation of zinc, cadmium and mercury isotopes from irradiated targets

    International Nuclear Information System (INIS)

    Diffusion-based separation methods allow the extraction of produced radionuclides with a low loss of target material, which is of special importance when enriched target material is used. We present a simple, non-destructive and rapid method to separate radioactive isotopes of IIB group elements (zinc, cadmium and mercury) from IB group metal targets irradiated with protons. Irradiated target foils were heated to a temperature 20oC below the melting point of the target material. During these conditions at least 90% of the desired radioactivity was evaporated with negligible loss of target material. Separation time was 15 min for mercury, 60 min for cadmium and 120 min for zinc. (author)

  7. String-Based Methods in Perturbative Gravity

    OpenAIRE

    Bern, Z.; Dunbar, D.C.; Shimada, T.

    1993-01-01

    String theory implies a relatively modest growth in computational complexity for perturbative gravity calculations as compared to gauge theory calculations, contrary to field theory expectations. An explicit string-based calculation, which would be extremely difficult using conventional techniques, is presented to illustrate this.

  8. Environmental signatures of enrichment facilities

    International Nuclear Information System (INIS)

    Environmental sampling is a potentially useful tool that could be used for the detection of undeclared enrichment facilities. However, this would be likely to require the use of sophisticated and expensive analytical techniques to evaluate 235U/238U ratios. It would be, therefore, unlikely to be an inexpensive approach to detect proliferation. The probability of detecting an enrichment operation will depend on the type of facility. A gaseous diffusion operation will be relatively difficult to detect in relation to an EMIS facility and a gaseous centrifuge plant will be more difficult still. Releases from an enrichment operation are likely to be restricted to atmospheric discharges. Aquatic discharges would be relatively easy to contain and it would be unwise to devise a sampling strategy based on the measurement of these. The detection of atmospheric discharges is likely to be dependent on meteorological conditions, in particular stability. Stable atmospheric conditions are the most favourable for detecting releases at significant distances from the plant. Given stable conditions, detection of an EMIS facility might be possible at a distance of several 10s of km

  9. Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

    DEFF Research Database (Denmark)

    Thomsen, Martin Christen Frølund; Nielsen, Morten

    2012-01-01

    Seq2Logo is a web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive representation of the position-specific amino acid composition of binding motifs, active...... related to amino acid enrichment and depletion. Besides allowing input in the format of peptides and MSA, Seq2Logo accepts input as Blast sequence profiles, providing easy access for non-expert end-users to characterize and identify functionally conserved/variable amino acids in any given protein...

  10. An ICA based method for texture recognition

    OpenAIRE

    Fournel, Thierry; Becker, Jean-Marie; Daniela COLTUC; Yann BOUTANT

    2006-01-01

    The method proposed in this paper uses the Independent Component Analysis (ICA) for an application of unsupervised recognition of textures. The analysed texture is modelled by a weighted sum of almost statistically independent random signals that are extracted with FastICA algorithm. Each resulting signal is described by its negentropy, more precisely, by one of the approximations used by FastICA algorithm. The approximated negentropies are sorted into descending order and represented by a cu...

  11. Reactor Physics Methods and Preconceptual Core Design Analyses for Conversion of the Advanced Test Reactor to Low-Enriched Uranium Fuel Annual Report for Fiscal Year 2012

    Energy Technology Data Exchange (ETDEWEB)

    David W. Nigg; Sean R. Morrell

    2012-09-01

    Under the current long-term DOE policy and planning scenario, both the ATR and the ATRC will be reconfigured at an appropriate time within the next several years to operate with low-enriched uranium (LEU) fuel. This will be accomplished under the auspices of the Reduced Enrichment Research and Test Reactor (RERTR) Program, administered by the DOE National Nuclear Security Administration (NNSA). At a minimum, the internal design and composition of the fuel element plates and support structure will change, to accommodate the need for low enrichment in a manner that maintains total core excess reactivity at a suitable level for anticipated operational needs throughout each cycle while respecting all control and shutdown margin requirements and power distribution limits. The complete engineering design and optimization of LEU cores for the ATR and the ATRC will require significant multi-year efforts in the areas of fuel design, development and testing, as well as a complete re-analysis of the relevant reactor physics parameters for a core composed of LEU fuel, with possible control system modifications. Ultimately, revalidation of the computational physics parameters per applicable national and international standards against data from experimental measurements for prototypes of the new ATR and ATRC core designs will also be required for Safety Analysis Report (SAR) changes to support routine operations with LEU. This report is focused on reactor physics analyses conducted during Fiscal Year (FY) 2012 to support the initial development of several potential preconceptual fuel element designs that are suitable candidates for further study and refinement during FY-2013 and beyond. In a separate, but related, effort in the general area of computational support for ATR operations, the Idaho National Laboratory (INL) is conducting a focused multiyear effort to introduce modern high-fidelity computational reactor physics software and associated validation protocols to replace

  12. Knowledge-based methods for control systems

    International Nuclear Information System (INIS)

    This thesis consists of three projects which combine artificial intelligence and control. The first part describes an expert system interface for system identification, using the interactive identification program Idpac. The interface works as an intelligent help system, using the command spy strategy. It contains a multitude of help system ideas. The concept of scripts is introduced as a data structure used to describe the procedural part of the knowledge in the interface. Production rules are used to represent diagnostic knowledge. A small knowledge database of scripts and rules has been developed and an example run is shown. The second part describes an expert system for frequency response analysis. This is one of the oldest and most widely used methods to determine the dynamics of a stable linear system. Though quite simple, it requires knowledge and experience of the user, in order to produce reliable results. The expert system is designed to help the user in performing the analysis. It checks whether the system is linear, finds the frequency and amplitude ranges, verifies the results, and, if errors should occur, tries to give explanation and remedies for them. The third part describes three diagnostic methods for use with industrial processes. They are measurement validation, i.e., consistency checking of sensor and measurement values using any redundancy of instrumentation; alarm analysis, i.e. analysis of multiple alarm situations to find which alarms are directly connected to primary faults and which alarms are consequential effects of the primary ones; and fault diagnosis, i.e., a search for the causes of and remedies for faults. The three methods use multilevel flow models, (MFM), to describe the target process. They have been implemented in the programming tool G2, and successfully tested on two small processes. (164 refs.) (au)

  13. Tailor-Made Stable Zr(IV)-Based Metal-Organic Frameworks for Laser Desorption/Ionization Mass Spectrometry Analysis of Small Molecules and Simultaneous Enrichment of Phosphopeptides.

    Science.gov (United States)

    Chen, Lianfang; Ou, Junjie; Wang, Hongwei; Liu, Zhongshan; Ye, Mingliang; Zou, Hanfa

    2016-08-10

    Although thousands of metal-organic frameworks (MOFs) have been fabricated and widely applied in gas storage/separations, adsorption, catalysis, and so on, few kinds of MOFs have been used as adsorption materials while simultaneously serving as matrixes to analyze small molecules for laser desorption/ionization mass spectrometry (LDI-MS). Herein, a new concept is introduced to design and synthesize MOFs as both adsorption materials and matrixes according to the structure of ligands and common matrixes. The proof of concept design was demonstrated by selection of 2,5-pyridinedicarboxylic acid (PDC) and 2,5-dihydroxyterephthalic acid (DHT) as ligands for synthesis of MOFs. Two Zr(IV)-based MOFs of UiO-66-PDC and UiO-66-(OH)2 were synthesized and applied for the first time as new matrixes for analysis of small molecules by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). Both of them showed low matrix interferences, high ionization efficiency, and good reproducibility when used as matrixes. A variety of small molecules, including saccharides, amino acids, nucleosides, peptides, alkaline drugs, and natural products, were analyzed. In addition, UiO-66-(OH)2 exhibited potential for application in the quantitative determination of glucose and pyridoxal 5'-phosphate. Furthermore, thanks to its intrinsically large surface area and highly ordered pores, UiO-66-(OH)2 also showed sensitive and specific enrichment of phosphopeptides prior to MS analysis. These results demonstrated that this strategy can be used to efficiently screen tailor-made MOFs as matrixes to analyze small molecules by MALDI-TOF-MS. PMID:27427857

  14. Biogenic carbon-enriched and pollutant depleted SRF from commercial and pretreated heterogeneous waste generated by NIR sensor-based sorting.

    Science.gov (United States)

    Pieber, Simone; Ragossnig, Arne; Pomberger, Roland; Curtis, Alexander

    2012-04-01

    Mechanical processing using predominantly particle size and density as separation criteria is currently applied in the production of solid-recovered fuel or refuse-derived fuel. It does not sufficiently allow for the optimization of the quality of heterogeneous solid waste for subsequent energy recovery. Material-specific processing, in contrast, allows the separation criterion to be linked to specific chemical constituents. Therefore, the technical applicability of material-specific sorting of heterogeneous waste, in order to optimize its routing options, was evaluated. Two sorting steps were tested on a pilot and a large scale. Near infrared multiplexed sensor-based sorting devices were used (1) to reduce the chlorine (Cl) respectively pollutant content, in order to broaden the utilization options of SRF in industrial co-incineration, and (2) to increase the biogenic carbon (C(bio)) content, which is highly relevant in the light of the EU emission trading scheme on CO₂. It was found that the technology is generally applicable for the heterogeneous waste fractions looked at, if the sensor systems are appropriately adjusted for the sorting task. The first sorting step allowed for the removal of up to 40% of the Cl freight by separating only 3 to 5% of the material mass. Very low Cl concentrations were achieved in the output stream to be used as solid-recovered fuel stream and additionally, the cadmium (Cd) and lead (Pb) concentration was decreased. A two- to four-fold enriched C(bio) content was achieved by the second sorting step. Due to lower yields in the large-scale test further challenges need to be addressed. PMID:22363024

  15. Shelf-life study of Indian traditional food based nutraceutical (oryzanol) enriched instant mixes Bhath-OZ and Upma-OZ.

    Science.gov (United States)

    Baby Latha, R; Debnath, Sukumar; Sarmandal, C V; Hemavathy, J; Khatoon, Sakina; Gopala Krishna, A G; Lokesh, B R

    2014-01-01

    To provide nutraceutical such as oryzanol through food, two instant mixes based on the Indian traditional food cuisine Bisibele bhath and Upma(Bhath-OZ and Upma-OZ) were developed and evaluated for shelf-life. The formulations contained cereals, pulses, and spices along with oryzanol enriched oil and were packed in 200gauge/50 gauge metallized polyester packaging material and stored under ambient (27 °C 65%RH) and accelerated conditions (37 °C/92%RH). Samples were withdrawn periodically and peroxide value (PV), free fatty acid value (FFA), fatty acid composition, oryzanol, and total tocopherols content were estimated. Sensory evaluation of reconstituted products was also carried out. Oryzanol content (610 and 550 mg%) did not change appreciably in Bhath-OZ and Upma-OZ respectively. The peroxide value under ambient condition increased from 1.1 to 9.3 meq.O2/kg and 2.24 to 9.02 meq.O2/kg during the 6 month storage study at 27 °C and 65% RH, while under accelerated conditions at 37 °C and 92%RH, it increased from 1.12 to 8.54 meq. O2/kg and 2.24 to 6.96 meq. O2/kg during 2 month storage period. Bhath-OZ and Upma-OZ packed in metallized polyester pouches stored at 27 °C and 65% RH had a shelf-life of 4 months without affecting the oryzanol content and quality of instant mixes during the storage period. PMID:24426057

  16. Scope-Based Method Cache Analysis

    DEFF Research Database (Denmark)

    Huber, Benedikt; Hepp, Stefan; Schoeberl, Martin

    2014-01-01

    , as it requests memory transfers at well-defined instructions only. In this article, we present a new cache analysis framework that generalizes and improves work on cache persistence analysis. The analysis demonstrates that a global view on the cache behavior permits the precise analyses of caches which are hard......The quest for time-predictable systems has led to the exploration of new hardware architectures that simplify analysis and reasoning in the temporal domain, while still providing competitive performance. For the instruction memory, the method cache is a conceptually attractive solution...

  17. Enriching Number Knowledge

    Science.gov (United States)

    Mack, Nancy K.

    2011-01-01

    Exploring number systems of other cultures can be an enjoyable learning experience that enriches students' knowledge of numbers and number systems in important ways. It helps students deepen mental computation fluency, knowledge of place value, and equivalent representations for numbers. This article describes how the author designed her…

  18. Designing job enrichment projects.

    Science.gov (United States)

    Clakeley, G L

    1988-01-01

    This paper describes a management strategy for a job satisfaction program utilized in a large occupational therapy department. The goal of the program is to retain satisfied, productive employees and reduce attrition of therapists and assistants. The use of job enrichment projects for occupational therapy assistants will be presented with brief descriptions of two projects. PMID:23944880

  19. Job Enrichment in Extension.

    Science.gov (United States)

    Fourman, Louis S.; Jones, Jo

    1997-01-01

    Interviews with 10 participants in Ohio State University's job enrichment program for midcareer extension agents found that 5 returned to their same jobs after the experience but only 2 felt challenged/renewed. Part-time participation while working made it difficult to balance responsibilities. More information and a structured orientation were…

  20. Enriching the Catalog

    Science.gov (United States)

    Tennant, Roy

    2004-01-01

    After decades of costly and time-consuming effort, nearly all libraries have completed the retrospective conversion of their card catalogs to electronic form. However, bibliographic systems still are really not much more than card catalogs on wheels. Enriched content that Amazon.com takes for granted--such as digitized tables of contents, cover…

  1. Methodology for content enrichment

    NARCIS (Netherlands)

    Nederbragt, H.; Heerlien, M.

    2010-01-01

    The STERNA project mainly focuses on enrichment of existing content of content holding organisations in the natural history domain. Therefore, developing a methodology on how to best integrate one’s content into the STERNA information space is an essential part of the project. This document is the o

  2. Proposal for Scrambled Method based on NTRU

    Directory of Open Access Journals (Sweden)

    Ahmed Tariq Sadiq

    2015-08-01

    Full Text Available Scrambling is widely used to protect the security of data files such as text, image, video or audio files; however, it is not the most efficient method to protect the security of the data files. This article uses NTRU public key cryptosystem to increase the robustness of scrambling of sound files. In this work, we convert the sound file into text, and then scramble it in the following way: first, we encrypt the header of the sound file then, scramble the data of the file after the header in three stages. In each stage we scramble the data of the sound file and keep the original order of data in an array then, the three arrays are encrypted by the sender and sent with the encrypted header to the receiver in one file, while the scrambled data of the sound file is sent to the receiver in another file. We have tested the proposed method on several sound files; the results show that the time of encryption and decryption is reduced to approximately one-third, or less, compared to encrypting the file using NTRU.

  3. Triptycene-based dianhydrides, polyimides, methods of making each, and methods of use

    KAUST Repository

    Ghanem, Bader

    2015-12-30

    A triptycene-based monomer, a method of making a triptycene-based monomer, a triptycene-based aromatic polyimide, a method of making a triptycene- based aromatic polyimide, methods of using triptycene-based aromatic polyimides, structures incorporating triptycene-based aromatic polyimides, and methods of gas separation are provided. Embodiments of the triptycene-based monomers and triptycene-based aromatic polyimides have high permeabilities and excellent selectivities. Embodiments of the triptycene-based aromatic polyimides have one or more of the following characteristics: intrinsic microporosity, good thermal stability, and enhanced solubility. In an exemplary embodiment, the triptycene-based aromatic polyimides are microporous and have a high BET surface area. In an exemplary embodiment, the triptycene-based aromatic polyimides can be used to form a gas separation membrane.

  4. Adaptive Mixture Methods Based on Bregman Divergences

    CERN Document Server

    Donmez, Mehmet A; Kozat, Suleyman S

    2012-01-01

    We investigate adaptive mixture methods that linearly combine outputs of $m$ constituent filters running in parallel to model a desired signal. We use "Bregman divergences" and obtain certain multiplicative updates to train the linear combination weights under an affine constraint or without any constraints. We use unnormalized relative entropy and relative entropy to define two different Bregman divergences that produce an unnormalized exponentiated gradient update and a normalized exponentiated gradient update on the mixture weights, respectively. We then carry out the mean and the mean-square transient analysis of these adaptive algorithms when they are used to combine outputs of $m$ constituent filters. We illustrate the accuracy of our results and demonstrate the effectiveness of these updates for sparse mixture systems.

  5. Gradient-based methods for sparse recovery

    CERN Document Server

    Hager, William; Zhang, Hongchao

    2009-01-01

    The convergence rate is analyzed for the SpaSRA algorithm (Sparse Reconstruction by Separable Approximation) for minimizing a sum $f (\\m{x}) + \\psi (\\m{x})$ where $f$ is smooth and $\\psi$ is convex, but possibly nonsmooth. It is shown that if $f$ is convex, then the error in the objective function at iteration $k$, for $k$ sufficiently large, is bounded by $a/(b+k)$ for suitable choices of $a$ and $b$. Moreover, if the objective function is strongly convex, then the convergence is $R$-linear. An improved version of the algorithm based on a cycle version of the BB iteration and an adaptive line search is given. The performance of the algorithm is investigated using applications in the areas of signal processing and image reconstruction.

  6. Uranium enrichment plant risk analysis

    International Nuclear Information System (INIS)

    A method for risk analysis of enrichment facilities is presented and applied to a small scale ultracentrifuge plant. Internal events are identified and the consequences of accidental releases of U F6 are quantified in terms of its toxicological and radiological impact. It is shown that releases in the feed and the cascade areas offers no hazards to the public . Releases of liquefied U F6 in the withdrawal areas, associated with failures in the building isolation systems, may cause undesirable consequences. (author). 11 refs, 4 figs, 3 tabs

  7. Rapid Column-Free Enrichment of Mononuclear Cells from Solid Tissues.

    Science.gov (United States)

    Scoville, Steven D; Keller, Karen A; Cheng, Stephanie; Zhang, Michael; Zhang, Xiaoli; Caligiuri, Michael A; Freud, Aharon G

    2015-07-30

    We have developed a rapid negative selection method to enrich rare mononuclear cells from human tissues. Unwanted and antibody-tethered cells are selectively depleted during a Ficoll separation step, and there is no need for magnetic-based reagents and equipment. The new method is fast, customizable, inexpensive, remarkably efficient, and easy to perform, and per sample the overall cost is less than one-tenth the cost associated with a magnetic column-based method.

  8. Possibility of nuclear pumped laser experiment using low enriched uranium

    Science.gov (United States)

    Obara, Toru; Takezawa, Hiroki

    2012-06-01

    Possibility to perform experiments for nuclear pumped laser oscillation by using low enriched uranium is investigated. Kinetic analyses are performed for two types of reactor design, one is using highly enriched uranium and the other is using low enriched uranium. The reactor design is based on the experiment reactor in IPPE. The results show the oscillation of nuclear pumped laser in the case of low enriched uranium reactor is also possible. The use of low enriched uranium in the experiment will make experiment easier.

  9. Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform

    OpenAIRE

    Chen, Rui; Im, Hogune; Snyder, Michael

    2015-01-01

    Multiple platforms are available for whole-exome enrichment and sequencing (WES). This protocol is based on the Illumina TruSeq Exome Enrichment platform, which captures ~62 Mb of the human exonic regions using 95-base DNA probes. In addition to covering the RefSeq and Ensembl coding sequences, the enriched sequences also include ~28 Mb of RefSeq untranslated regions (UTR). The protocol can be performed at the benchside without the need for automation, and the resulting library can be used fo...

  10. Theory-Based Lexicographical Methods in a Functional Perspective

    DEFF Research Database (Denmark)

    Tarp, Sven

    2014-01-01

    This contribution provides an overview of some of the methods used in relation to the function theory. It starts with a definition of the concept of method and the relation existing between theory and method. It establishes an initial distinction between artisanal and theory-based methods...

  11. Answer Card Identification Method Based on Pattern Recognition Technology

    OpenAIRE

    Xu Jing; Zhang Kun Fang

    2016-01-01

    The traditional answer card reading method using OMR (Optical Mark Reader), most commonly, OMR special card special use, less versatile, high cost, aiming at the existing problems proposed a method based on pattern recognition of the answer card identification method. Using the method based on Line Segment Detector to detect the tilt of the image, the existence of tilt image rotation correction, and eventually achieve positioning and detection of answers to the answer sheet .Pattern recogniti...

  12. Profile of World Uranium Enrichment Programs - 2007

    Energy Technology Data Exchange (ETDEWEB)

    Laughter, Mark D [ORNL

    2007-11-01

    of the future, but has yet to be demonstrated commercially. In the early 1980s, six countries developing gas centrifuge technology (United States, United Kingdom, Germany, the Netherlands, Japan, and Australia) along with the International Atomic Energy Agency (IAEA) and the European Atomic Energy Community (EURATOM) began developing effective safeguards techniques for GCEPs. This effort was known as the Hexapartite Safeguards Project (HSP). The HSP had the goal of maximizing safeguards effectiveness while minimizing the cost to the operator and inspectorate, and adopted several recommendations, such as the acceptance of limited-frequency unannounced access (LFUA) inspections in cascade halls, and the use of nondestructive assay (NDA) measurements and tamper-indicating seals. While only the HSP participants initially committed to implementing all the measures of the approach, it has been used as a model for the safeguards applied to GCEPs in additional states. This report provides a snapshot overview of world enrichment capacity in 2007, including profiles of the uranium enrichment programs of individual states. It is based on open-source information, which is dependent on unclassified sources and may therefore not reflect the most recent developments. In addition, it briefly describes some of the safeguards techniques being used at various enrichment plants, including implementation of HSP recommendations.

  13. AN IMAGE RETRIEVAL METHOD BASED ON SPATIAL DISTRIBUTION OF COLOR

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Color histogram is now widely used in image retrieval. Color histogram-based image retrieval methods are simple and efficient but without considering the spatial distribution information of the color. To overcome the shortcoming of conventional color histogram-based image retrieval methods, an image retrieval method based on Radon Transform (RT) is proposed. In order to reduce the computational complexity,wavelet decomposition is used to compress image data. Firstly, images are decomposed by Mallat algorithm.The low-frequency components are then projected by RT to generate the spatial color feature. Finally the moment feature matrices which are saved along with original images are obtained. Experimental results show that the RT based retrieval is more accurate and efficient than traditional color histogram-based method in case that there are obvious objects in images. Further more, RT based retrieval runs significantly faster than the traditional color histogram methods.

  14. A novel method for fast enrichment and monitoring of hexavalent and trivalent chromium at the ppt level with modified silica MCM-41 and its determination by inductively coupled plasma optical emission spectrometry

    Directory of Open Access Journals (Sweden)

    Mohammad Reza Ganjali

    2006-06-01

    Full Text Available Chromium(III at the ng L-1 level was extracted using partially silylated MCM-41 modified by a tetraazamacrocyclic compound (TAMC and determined by inductively coupled plasma optical emision spectrometry (ICP OES. The extraction time and efficiency, pH and flow rate, type and minimum amount of stripping acid, and break- through volume were investigated. The method's enrichment factor and detection limit are 300 and 45.5 pg mL-1, respectively. The maximum capacity of the 10 mg of modified silylated MCM-41 was found to be 400.5±4.7 µg for Cr(III. The method was applied to the determination of Cr(III and Cr(VI in the wastewater of the chromium electroplating industry and in environmental and biological samples (black tea, hot and black pepper.

  15. Enrichment-ELISA for Detection of Salmonella typhi From Food and Water Samples

    Institute of Scientific and Technical Information of China (English)

    S.KUMAR; K.BALAKRISHNA; HV.BATRA

    2008-01-01

    Objective Development of monoclonal antibody based sandwich enzyme linked immunosorbant assay(sELISA)for rapid detection of Salmonella enterica serovar typhi(S.typhi) from food and water samples and optimization of enrichment procedures for use with the developed sELISA to increase the detection Sensitivity of the assay. Methods Spleen cells from BALB/c mice immunized with flagellin(H=d)antigen of S.typhi were fused with Sp2/0 myeloma cells.The hybridoma cell line specific to H=d antigen was established.characterized and ascites raised against one of these clones.The hypefimmune serum to flagellin antigen was raised in New Zealand White rabbits.An sELISA was developed using polyclonalantibody as capture and monoelonal antibody as detection antibody.To design the efficient culture sUrategies for use with the sELISA.different pre-enrichment and enrichment brothswere evaluated.The mediaincluded buffered peptonewater(BPW)and brain heart infusion broth for pre-enrichment and selenite F broth and Rappaport-Vassiliadis broth as enrichment broths.The developed sELISA with preceding enrichment step in BPW(Enrichment-ELISA)was evaluated in various food samples artificially inoculated with S. typhi bacteria.Various food(30)and water(35)samples collected from field were also tested by Enrichment-ELISA and culture method. Results Out of four specific clones to H=d antigen,one clone(#2/56.IgG2a isotype)was usedin sELISA.The sELISA had the detectionlimit of 104-105 cfu of S.typhi.Of the various broths used with sELISA,BPW was found to yield maximum ELISA values.Enrichment-ELISA,when tested in artificially inoculated food samples,generally,could detect 102S.typhi cfu/mL within 10 h from variousfood rinses(meat,vegetable)and milk samples.After overnight enrichment in BPW,as less as 2 bacteria per 10 mL of milk,meat rinse.and chicken rinse could be detected.Only one of the field samples(water)gave false positive result by Enrichment-ELISA.Conclusion In comparison to culture

  16. Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology

    Directory of Open Access Journals (Sweden)

    Gu JianLei

    2009-08-01

    Full Text Available Abstract Background Gene set analysis based on Gene Ontology (GO can be a promising method for the analysis of differential expression patterns. However, current studies that focus on individual GO terms have limited analytical power, because the complex structure of GO introduces strong dependencies among the terms, and some genes that are annotated to a GO term cannot be found by statistically significant enrichment. Results We proposed a method for enriching clustered GO terms based on semantic similarity, namely cluster enrichment analysis based on GO (CeaGO, to extend the individual term analysis method. Using an Affymetrix HGU95aV2 chip dataset with simulated gene sets, we illustrated that CeaGO was sensitive enough to detect moderate expression changes. When compared to parent-based individual term analysis methods, the results showed that CeaGO may provide more accurate differentiation of gene expression results. When used with two acute leukemia (ALL and ALL/AML microarray expression datasets, CeaGO correctly identified specifically enriched GO groups that were overlooked by other individual test methods. Conclusion By applying CeaGO to both simulated and real microarray data, we showed that this approach could enhance the interpretation of microarray experiments. CeaGO is currently available at http://chgc.sh.cn/en/software/CeaGO/.

  17. Enrichment marketplace - today (and tomorrow)

    International Nuclear Information System (INIS)

    The technologies and capacities of the four primary sources of enrichment services, the United States Department of Energy, Eurodif, Techsnabexport of the Soviet Union, and Urenco, were given. Forecasts of future capacities and prices of enriched uranium were also included

  18. A novel method for simultaneous measurement of concentration and enrichment of NO synthesis-specific amino acids in human plasma using stable isotopes and LC/MS ion trap analysis.

    Science.gov (United States)

    Oosterink, J Efraim; Buijs, Nikki; van Goudoever, Johannes B; Schierbeek, Henk

    2014-05-01

    Stable isotope studies offer the opportunity to study the in-depth metabolic pathway of glutamine, citrulline, and arginine amino acids involved in NO synthesis. The use of multiple stable isotopes can be used to elucidate the exact transformation of glutamine to citrulline and arginine de novo synthesis. This novel method provides a purification step using cation exchange resin in combination with a rapid and easy derivatization procedure for a precise and robust measurement of the concentration and isotopic enrichments of NO synthesis-specific amino acids using a liquid chromatography mass spectrometry (LC/MS) ion trap system with high sensitivity and selectivity. The ethyl chloroformate derivatization procedure is beneficial in terms of robustness, velocity, simplicity, and derivative stability. In addition, the ethyl chloroformate derivatization can be performed at room temperature in an aqueous environment without incubation and the isolation of the derivatives from the reaction mixture also serves as a purification step. The concentration and enrichment of NO synthesis-specific amino acids as well as phenylalanine and tyrosine to determine protein turnover, were measured with good inter-day precision for the concentration (glutamine-citrulline-arginine pathway by using stable isotope studies.

  19. Systems and methods for interpolation-based dynamic programming

    KAUST Repository

    Rockwood, Alyn

    2013-01-03

    Embodiments of systems and methods for interpolation-based dynamic programming. In one embodiment, the method includes receiving an object function and a set of constraints associated with the objective function. The method may also include identifying a solution on the objective function corresponding to intersections of the constraints. Additionally, the method may include generating an interpolated surface that is in constant contact with the solution. The method may also include generating a vector field in response to the interpolated surface.

  20. Auditory-model-based Feature Extraction Method for Mechanical Faults Diagnosis

    Institute of Scientific and Technical Information of China (English)

    LI Yungong; ZHANG Jinping; DAI Li; ZHANG Zhanyi; LIU Jie

    2010-01-01

    It is well known that the human auditory system possesses remarkable capabilities to analyze and identify signals. Therefore, it would be significant to build an auditory model based on the mechanism of human auditory systems, which may improve the effects of mechanical signal analysis and enrich the methods of mechanical faults features extraction. However the existing methods are all based on explicit senses of mathematics or physics, and have some shortages on distinguishing different faults, stability, and suppressing the disturbance noise, etc. For the purpose of improving the performances of the work of feature extraction, an auditory model, early auditory(EA) model, is introduced for the first time. This auditory model transforms time domain signal into auditory spectrum via bandpass filtering, nonlinear compressing, and lateral inhibiting by simulating the principle of the human auditory system. The EA model is developed with the Gammatone filterbank as the basilar membrane. According to the characteristics of vibration signals, a method is proposed for determining the parameter of inner hair cells model of EA model. The performance of EA model is evaluated through experiments on four rotor faults, including misalignment, rotor-to-stator rubbing, oil film whirl, and pedestal looseness. The results show that the auditory spectrum, output of EA model, can effectively distinguish different faults with satisfactory stability and has the ability to suppress the disturbance noise. Then, it is feasible to apply auditory model, as a new method, to the feature extraction for mechanical faults diagnosis with effect.

  1. Enriching Orphans’ Potentials through Interpersonal and Intrapersonal Intelligence Enrichment Activities

    Directory of Open Access Journals (Sweden)

    Nurulwahida Hj Azid

    2016-01-01

    Full Text Available Orphans are considered a minority and they should be given a greater emphasis so that they do not feel left out and can build their own lives without a sense of humility. This does not mean that the orphans should be pampered instead they should be given the confidence and motivation to strive for success in later life. Humility among orphans can be associated with interpersonal and intrapersonal intelligences. This study aims to evaluate the impact of problem-solving activity treatment based on the interpersonal and intrapersonal intelligences. 46 students from two orphanages were involved as the treatment group. The research design used was a one-group pretest-posttest design applied through a combination of quantitative and qualitative approaches. Enrichment activities that provided interpersonal and intrapersonal skills as evidenced in this study should be carried out regularly at orphanages. Our study has proven that orphans‟ rights to learn cannot be neglected and „no child left behind „policy needs to be carried through by everybody involved with orphans‟ well-being. Teachers and carers need to be trained to use these enrichment activities at their orphanages to help maximize the orphans‟ potentials.

  2. Identification of Distinct Breast Cancer Stem Cell Populations Based on Single-Cell Analyses of Functionally Enriched Stem and Progenitor Pools

    OpenAIRE

    Nina Akrap; Daniel Andersson; Eva Bom; Pernilla Gregersson; Anders Ståhlberg; Göran Landberg

    2016-01-01

    Summary The identification of breast cancer cell subpopulations featuring truly malignant stem cell qualities is a challenge due to the complexity of the disease and lack of general markers. By combining extensive single-cell gene expression profiling with three functional strategies for cancer stem cell enrichment including anchorage-independent culture, hypoxia, and analyses of low-proliferative, label-retaining cells derived from mammospheres, we identified distinct stem cell clusters in b...

  3. Method for detecting software anomalies based on recurrence plot analysis

    Directory of Open Access Journals (Sweden)

    Michał Mosdorf

    2012-03-01

    Full Text Available Presented paper evaluates method for detecting software anomalies based on recurrence plot analysis of trace log generated by software execution. Described method for detecting software anomalies is based on windowed recurrence quantification analysis for selected measures (e.g. Recurrence rate - RR or Determinism - DET. Initial results show that proposed method is useful in detecting silent software anomalies that do not result in typical crashes (e.g. exceptions.

  4. Proceedings of the international meeting on development, fabrication, and application of Reduced Enrichment fuels for Research and Test Reactors (RERTR). Base technology

    International Nuclear Information System (INIS)

    The international effort to develop new fuel materials and designs which will make it feasible to fuel research and test reactors throughout the world with low-enrichment uranium, instead of high-enrichment uranium, has made significant progress during the past year. This progress has taken place at research centers located in many different countries, and is of crucial interest to reactor operators and licensors whose geographical distribution is even more varied. It is appropriate, therefore, that international meetings be held periodically to foster direct communication among the specialists in this area. To achieve this purpose, the Reduced Enrichment Research and Test Reactor (RERTR) Program, at the Argonne National Laboratory, sponsored this meeting as the third of a series which begun in 1978. The papers presented at this meeting were divided into sessions according to relevant subject: status of RERTR program and safety issues; development of new fuel types; testing of new fuel elements; specific reactor applications. These proceedings were edited by various members of the RERTR Program

  5. Correlation theory-based signal processing method for CMF signals

    Science.gov (United States)

    Shen, Yan-lin; Tu, Ya-qing

    2016-06-01

    Signal processing precision of Coriolis mass flowmeter (CMF) signals affects measurement accuracy of Coriolis mass flowmeters directly. To improve the measurement accuracy of CMFs, a correlation theory-based signal processing method for CMF signals is proposed, which is comprised of the correlation theory-based frequency estimation method and phase difference estimation method. Theoretical analysis shows that the proposed method eliminates the effect of non-integral period sampling signals on frequency and phase difference estimation. The results of simulations and field experiments demonstrate that the proposed method improves the anti-interference performance of frequency and phase difference estimation and has better estimation performance than the adaptive notch filter, discrete Fourier transform and autocorrelation methods in terms of frequency estimation and the data extension-based correlation, Hilbert transform, quadrature delay estimator and discrete Fourier transform methods in terms of phase difference estimation, which contributes to improving the measurement accuracy of Coriolis mass flowmeters.

  6. Teaching based on the case method of building collective protection

    OpenAIRE

    Gonzalez Garcia, Nieves; Cobo Escamilla, Alfonso; Moreno Fernandez, Maria Esther

    2013-01-01

    One of the fundamental aspects in the adaptation of the teaching to the European higher education is changing based models of teacher education to models based on student learning. In this work we present an educational experience developed with the teaching method based on the case method, with a clearly multidisciplinary. The experience has been developed in the teaching of analysis and verification of safety rails. This is a multidisciplinary field that presents great difficulties during t...

  7. Qualitative Comparison of Contraction-Based Curve Skeletonization Methods

    NARCIS (Netherlands)

    Sobiecki, André; Yasan, Haluk C.; Jalba, Andrei C.; Telea, Alexandru C.

    2013-01-01

    In recent years, many new methods have been proposed for extracting curve skeletons of 3D shapes, using a mesh-contraction principle. However, it is still unclear how these methods perform with respect to each other, and with respect to earlier voxel-based skeletonization methods, from the viewpoint

  8. Classification-Based Method of Linear Multicriteria Optimization

    OpenAIRE

    Vassilev, Vassil; Genova, Krassimira; Vassileva, Mariyana; Narula, Subhash

    2003-01-01

    The paper describes a classification-based learning-oriented interactive method for solving linear multicriteria optimization problems. The method allows the decision makers describe their preferences with greater flexibility, accuracy and reliability. The method is realized in an experimental software system supporting the solution of multicriteria optimization problems.

  9. A Meta-Path-Based Prediction Method for Human miRNA-Target Association

    Science.gov (United States)

    Huang, Cong; Ding, Pingjian

    2016-01-01

    MicroRNAs (miRNAs) are short noncoding RNAs that play important roles in regulating gene expressing, and the perturbed miRNAs are often associated with development and tumorigenesis as they have effects on their target mRNA. Predicting potential miRNA-target associations from multiple types of genomic data is a considerable problem in the bioinformatics research. However, most of the existing methods did not fully use the experimentally validated miRNA-mRNA interactions. Here, we developed RMLM and RMLMSe to predict the relationship between miRNAs and their targets. RMLM and RMLMSe are global approaches as they can reconstruct the missing associations for all the miRNA-target simultaneously and RMLMSe demonstrates that the integration of sequence information can improve the performance of RMLM. In RMLM, we use RM measure to evaluate different relatedness between miRNA and its target based on different meta-paths; logistic regression and MLE method are employed to estimate the weight of different meta-paths. In RMLMSe, sequence information is utilized to improve the performance of RMLM. Here, we carry on fivefold cross validation and pathway enrichment analysis to prove the performance of our methods. The fivefold experiments show that our methods have higher AUC scores compared with other methods and the integration of sequence information can improve the performance of miRNA-target association prediction.

  10. A Study of Learning and Motivation in a New Media Enriched Environment for Middle School Science

    Science.gov (United States)

    Liu, Min; Horton, Lucas; Olmanson, Justin; Toprac, Paul

    2011-01-01

    This study examines middle school students' learning and motivation as they engaged in a new media enriched problem-based learning (PBL) environment for middle school science. Using a mixed-method design with both quantitative and qualitative data, we investigated the effect of a new media environment on sixth graders' science learning, their…

  11. Multiplex target enrichment using DNA indexing for ultra-high throughput SNP detection.

    LENUS (Irish Health Repository)

    Kenny, Elaine M

    2011-02-01

    Screening large numbers of target regions in multiple DNA samples for sequence variation is an important application of next-generation sequencing but an efficient method to enrich the samples in parallel has yet to be reported. We describe an advanced method that combines DNA samples using indexes or barcodes prior to target enrichment to facilitate this type of experiment. Sequencing libraries for multiple individual DNA samples, each incorporating a unique 6-bp index, are combined in equal quantities, enriched using a single in-solution target enrichment assay and sequenced in a single reaction. Sequence reads are parsed based on the index, allowing sequence analysis of individual samples. We show that the use of indexed samples does not impact on the efficiency of the enrichment reaction. For three- and nine-indexed HapMap DNA samples, the method was found to be highly accurate for SNP identification. Even with sequence coverage as low as 8x, 99% of sequence SNP calls were concordant with known genotypes. Within a single experiment, this method can sequence the exonic regions of hundreds of genes in tens of samples for sequence and structural variation using as little as 1 μg of input DNA per sample.

  12. 煤矿陷落柱赋水特征的综合物探探查原理与方法%Integrated geophysical prospecting principle and method of explorating the water enrichment of coal mine collapse column

    Institute of Scientific and Technical Information of China (English)

    杨武洋

    2013-01-01

    The sizes and distribution range of collapse columns existing in Huainan mining area have been found out by 3-D seismic exploration, but the water enrichment conditions inside the columns are not clear, which greatly influences the safety mining. In this paper, the Controlled-Source Audiomag-netotellurics and Electromagnetic Wave method were adopted to prospect the water abundance of collapse columns. The result shows that the apparent formation resistivity has a certain correlation with the water abundance, that is, low resistivity is corresponding to abundant water, while high resistivity correlates with low or no water abundance. Meanwhile, the water enrichment of collapse column are analyzed according to tlie horizontal and longitudinal apparent resisitivity profiles in different depth, and the detection results show that the water abundance in the south of collapse column and partial areas near the faults are relatively large, namely there only exists partial water enrichment in the collapse column. A small amount of validation drillings on the ground have been constructed, and the detection results correspond well with those of drilling, which provides a new integrated geophysical method for the prospecting of collapse column in coal mine.%用三维地震勘探查明了淮南矿区多个陷落柱的大小及分布范围,但柱体内赋水状况不明,极大地影响了矿井的安全生产,决定采用可控源音频大地电磁法和电磁波法对陷落柱的富水性进行探查.研究表明,地层电阻率的大小与富水程度具有一定的相关性,低电阻率值对应于强富水,高电阻率为弱富水或不富水.依据陷落柱不同深度的电阻率水平截面和纵向电阻率剖面对陷落柱的富水性作出分析,探测结果显示:在陷落柱的南部及靠近断层的局部地段富水较强,即柱体内仅局部富水.在地面施工少量验证钻孔,探测结果与钻探资料吻合较好,为煤矿陷落柱的探查提供了一种新的综合物探方法.

  13. Highly sensitive methods for electroanalytical chemistry based on nanotubule membranes.

    Science.gov (United States)

    Kobayashi, Y; Martin, C R

    1999-09-01

    Two new methods of electroanalysis are described. These methods are based on membranes containing monodisperse Au nanotubules with inside diameters approaching molecular dimensions. In one method, the analyte species is detected by measuring the change in trans-membrane current when the analyte is added to the nanotubule-based cell. The second method entails the use of a concentration cell based on the nanotubule membrane. In this case, the change in membrane potential is used to detect the analyte. Detection limits as low as 10(-11) M have been achieved. Hence, these methods compete with even the most sensitive of modern analytical methodologies. In addition, excellent molecular-sized-based selectivity is observed.

  14. Uranium enrichment by gas centrifuge

    International Nuclear Information System (INIS)

    After recalling the physical principles and the techniques of centrifuge enrichment the report describes the centrifuge enrichment programmes of the various countries concerned and compares this technology with other enrichment technologies like gaseous diffusion, laser, aerodynamic devices and chemical processes. The centrifuge enrichment process is said to be able to replace with advantage the existing enrichment facilities in the short and medium term. Future prospects of the process are also described, like recycled uranium enrichment and economic improvements; research and development needs to achieve the economic prospects are also indicated. Finally the report takes note of the positive aspect of centrifuge enrichment as far as safeguards and nuclear safety are concerned. 27 figs, 113 refs

  15. Conceptual bases of the brand valuation by cost method

    Directory of Open Access Journals (Sweden)

    G.Y. Studinska

    2015-03-01

    Full Text Available The necessity of valuing intangible assets in accordance with international trends is substantiated. The brand is seen as more important component of intangible assets, as an effective management tool company. The benefits and uses of brand evaluation results are investigated. System monocriterion cost brand evaluation methods is analyzed. In particular, methods that require evaluation by the time factor (current and forecast methods and methods for factor comparison base (relative and absolute. The cost method of brand valuation through market transactions in accordance J.Common’s classification is considered in detail. The explanation of the difference between method a summation of all costs and method of brand valuation through market transactions is provided. The advantages and disadvantages considered cost method of brand valuation are investigated. The cost method as the relative-predicted of the brand valuation, «The method of determining the proportion of the brand from the discounted total costs» is grounded

  16. A Spatialization-based Method for Checking and Updating Metadata

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    In this paper the application of spatialization technology on metadata quality check and updating was discussed. A new method based on spatialization was proposed for checking and updating metadata to overcome the deficiency of text based methods with the powerful functions of spatial query and analysis provided by GIS software. This method employs the technology of spatialization to transform metadata into a coordinate space and the functions of spatial analysis in GIS to check and update spatial metadata in a visual environment. The basic principle and technical flow of this method were explained in detail, and an example of implementation using ArcMap of GIS software was illustrated with a metadata set of digital raster maps. The result shows the new method with the support of interaction of graph and text is much more intuitive and convenient than the ordinary text based method, and can fully utilize the functions of GIS spatial query and analysis with more accuracy and efficiency.

  17. A New Adaptive Image Denoising Method Based on Neighboring Coefficients

    Science.gov (United States)

    Biswas, Mantosh; Om, Hari

    2016-03-01

    Many good techniques have been discussed for image denoising that include NeighShrink, improved adaptive wavelet denoising method based on neighboring coefficients (IAWDMBNC), improved wavelet shrinkage technique for image denoising (IWST), local adaptive wiener filter (LAWF), wavelet packet thresholding using median and wiener filters (WPTMWF), adaptive image denoising method based on thresholding (AIDMT). These techniques are based on local statistical description of the neighboring coefficients in a window. These methods however do not give good quality of the images since they cannot modify and remove too many small wavelet coefficients simultaneously due to the threshold. In this paper, a new image denoising method is proposed that shrinks the noisy coefficients using an adaptive threshold. Our method overcomes these drawbacks and it has better performance than the NeighShrink, IAWDMBNC, IWST, LAWF, WPTMWF, and AIDMT denoising methods.

  18. A New Method for Riccati Differential Equations Based on Reproducing Kernel and Quasilinearization Methods

    Directory of Open Access Journals (Sweden)

    F. Z. Geng

    2012-01-01

    Full Text Available We introduce a new method for solving Riccati differential equations, which is based on reproducing kernel method and quasilinearization technique. The quasilinearization technique is used to reduce the Riccati differential equation to a sequence of linear problems. The resulting sets of differential equations are treated by using reproducing kernel method. The solutions of Riccati differential equations obtained using many existing methods give good approximations only in the neighborhood of the initial position. However, the solutions obtained using the present method give good approximations in a larger interval, rather than a local vicinity of the initial position. Numerical results compared with other methods show that the method is simple and effective.

  19. Enrichment of U-235 by the separation nozzle process

    International Nuclear Information System (INIS)

    The most favorable results for practical application of the separation nozzle method have so far been obtained with a separating system in which a band-shaped gaseous jet consisting of a UF6/H2-mixture is deflected by a curved wall. Different methods have been developed to produce tubular separation elements based on this principle. Presently, separation capacities of up to 50 SWU/year can be achieved with tubular separation elements 15 cm in diameter and 2 m in length. These separation nozzles need a specific compression work of 2,700 kWh/SWU. Taking into account all energy losses of the enrichment facility this results in a specific energy consumption of about 4,000 kWh/SWU for an industrial-scale plant. Stages equipped with tubular separation elements have performed successfully since 1972 and 1974, respectively. The efficiency of UF6-recycling on the top of the cascades has been demonstrated. The tests of these prototypes provided the knowledge necessary for planning and engineering of industrial-scale enrichment plants. The operating characteristics of such separation nozzle plants can be predicted with high reliability using appropriate digital computer simulation showing that smooth and inherent stable cascade operation can be expected. On the basis of these results a technology program was initiated to provide the prototypes for enrichment plants with capacities of the order of 2.5 to 5 million SWU/year and more. (orig.)

  20. A Fast Leak Locating Method Based on Wavelet Transform

    Institute of Scientific and Technical Information of China (English)

    GE Chuanhu; YANG Hongying; YE Hao; WANG Guizeng

    2009-01-01

    The problem of leak location is actually a time delay estimation (TDE) problem. Since most exist-ing TDE methods may encounter the problem of high computational complexity when used for online leak location. This paper presents a fast leak locating method based on wavelet transform (WT). The method first gets a rough estimate of the time delay from the WT coefficients of the pressure signals at the largest scale, then keeps refining the estimate using WT coefficients on smaller and smaller scales. Quantitative analyses and test results based on real data show that the method reduces the computational complexity while main-taining the time delay estimation accuracy.

  1. Network Traffic Anomalies Identification Based on Classification Methods

    Directory of Open Access Journals (Sweden)

    Donatas Račys

    2015-07-01

    Full Text Available A problem of network traffic anomalies detection in the computer networks is analyzed. Overview of anomalies detection methods is given then advantages and disadvantages of the different methods are analyzed. Model for the traffic anomalies detection was developed based on IBM SPSS Modeler and is used to analyze SNMP data of the router. Investigation of the traffic anomalies was done using three classification methods and different sets of the learning data. Based on the results of investigation it was determined that C5.1 decision tree method has the largest accuracy and performance and can be successfully used for identification of the network traffic anomalies.

  2. Data Mining and Knowledge Discovery via Logic-Based Methods

    CERN Document Server

    Triantaphyllou, Evangelos

    2010-01-01

    There are many approaches to data mining and knowledge discovery (DM&KD), including neural networks, closest neighbor methods, and various statistical methods. This monograph, however, focuses on the development and use of a novel approach, based on mathematical logic, that the author and his research associates have worked on over the last 20 years. The methods presented in the book deal with key DM&KD issues in an intuitive manner and in a natural sequence. Compared to other DM&KD methods, those based on mathematical logic offer a direct and often intuitive approach for extracting easily int

  3. Online trapping and enrichment ultra performance liquid chromatography-tandem mass spectrometry method for sensitive measurement of 'arginine-asymmetric dimethylarginine cycle' biomarkers in human exhaled breath condensate

    Energy Technology Data Exchange (ETDEWEB)

    Di Gangi, Iole Maria, E-mail: giordano@pediatria.unipd.it [Chromatography and Mass Spectrometry Laboratory, Department of Women' s and Children' s Health, University of Padova (Italy); Pirillo, Paola [Chromatography and Mass Spectrometry Laboratory, Department of Women' s and Children' s Health, University of Padova (Italy); Carraro, Silvia [Unit of Allergy and Respiratory Diseases, Department of Women' s and Children' s Health, University of Padova (Italy); Gucciardi, Antonina; Naturale, Mauro [Chromatography and Mass Spectrometry Laboratory, Department of Women' s and Children' s Health, University of Padova (Italy); Baraldi, Eugenio [Unit of Allergy and Respiratory Diseases, Department of Women' s and Children' s Health, University of Padova (Italy); Giordano, Giuseppe [Chromatography and Mass Spectrometry Laboratory, Department of Women' s and Children' s Health, University of Padova (Italy)

    2012-11-19

    Highlights: Black-Right-Pointing-Pointer Simultaneous quantification of 'arginine-ADMA cycle' metabolites developed in EBC. Black-Right-Pointing-Pointer EBC is a non-invasive matrix highly useful in patients with respiratory diseases. Black-Right-Pointing-Pointer Method, fast, precise and accurate, is suitable in the pediatric clinical studies. Black-Right-Pointing-Pointer Sensitivity is increased using on-line trapping and enrichment-UPLC-MS/MS method. Black-Right-Pointing-Pointer EBC measurements in asthmatic adolescents confirm that ADMA is increased in asthma. - Abstract: Background: Exhaled breath condensate (EBC) is a biofluid collected non invasively that, enabling the measurement of several biomarkers, has proven useful in the study of airway inflammatory diseases, including asthma, COPD and cystic fibrosis. To the best of our knowledge, there is no previous report of any analytical method to detect ADMA in EBC. Objectives: Aim of this work was to develop an online sample trapping and enrichment system, coupled with an UPLC-MS/MS method, for simultaneous quantification of seven metabolites related to 'Arginine-ADMA cycle', using the isotopic dilution. Methods: Butylated EBC samples were trapped in an online cartridge, washed before and after each injection with cleanup solution to remove matrix components and switched inline into the high pressure analytical column. Multiple reaction monitoring in positive mode was used for analyte quantification by tandem mass spectrometry. Results: Validation studies were performed in EBC to examine accuracy, precision and robustness of the method. For each compound, the calibration curves showed a coefficient of correlation (r{sup 2}) greater than 0.992. Accuracy (%Bias) was <3% except for NMMA and H-Arg (<20%), intra- and inter-assay precision (expressed as CV%) were within {+-}20% and recovery ranged from 97.1 to 102.8% for all analytes. Inter-day variability analysis on 20 EBC of adult subjects did

  4. Determination of trace anions in liquefied petroleum gas using liquid absorption and electrokinetic migration for enrichment followed by ion chromatography.

    Science.gov (United States)

    Li, Meilan; Yang, Jianmin; Li, Hai-Fang; Lin, Jin-Ming

    2012-06-01

    A simple sample enrichment technique, electrokinetic migration enrichment in single phase using a designed device, coupled with ion chromatography is presented for the determination of four anions (H(2)PO(4)(-), Cl(-), NO(3)(-), and SO(4)(2-)) in liquefied petroleum gas by liquid adsorption. The electrokinetic migration enrichment is based on the phenomenon of ion electrokinetic migration to the opposite electrode. When the anions migrated to the anode in a smaller volume chamber under the electric field, the concentration was realized. The main parameters affecting enrichment efficiency of applied voltage and enrichment time were investigated. The ion chromatography condition for anions separation was also studied. Under the optimal electrokinetic migration enrichment and ion chromatography conditions, the four anions were detected simultaneously with good linear relationship (r(2) = 0.9908-0.9968) and high precisions (less than 5% of the relative standard deviations of peak areas). The limits of detection of anions (S/N of 3) were in the range of 8-600 μg L(-1). The enrichment factors of the four anions ranged from 3.1 to 5.8. The established method was successfully applied to the analysis of the trace anions in liquefied petroleum gas by liquid adsorption with satisfactory results. The advantages of this method are simple operation and low cost.

  5. Development of low enrichment MTR fuel at Dounreay

    International Nuclear Information System (INIS)

    Work up to October 1983 on the development of a manufacturing route for the manufacture of low enriched fuel at Dounreay concentrated on the roll-bonding method of plate manufacture. Both U-Al alloy and U3O8-Al cermet elements at 45% enrichment have been irradiated and the fabrication of 20% enriched U3O8-Al cermet elements is in hand. (author). 3 refs, 2 tabs

  6. Enrichment: Present and projected future supply and demand

    Energy Technology Data Exchange (ETDEWEB)

    Lenders, Maurice [URENCO, Buckinghamshire (United Kingdom)

    2009-04-15

    Long term fuel cycle contracts provide reliable supply at predictable cost. By 2015 all operating enrichment capacity may be based on centrifuge. Enrichment capacity expansion will be modular and adjusted to meet demand in a competitive market. Two primary sources of technology (ETC or Russia) can provide all required capacity worldwide. Sufficient enrichment capacity can be installed on time to meet forecast SWU demand for existing and new NPP worldwide.

  7. [The use of total enteral formula with enriched nutrient in home Low Calorie Diet(LCD)therapy based on regular meal].

    Science.gov (United States)

    Hata, Akiko; Ibata, Takeshi; Shinoki, Keiji; Ando, Yukiko; Hirata, Takahiro; Kojima, Atsuko; Nishijima, Ritsuko; Doi, Seiko; Komuro, Ryutaro; Iijima, Shohei

    2010-12-01

    We made a low calorie diet(LCD)menu which added two commercial supporting nutritional supplements to a meal. Because a conventional formula food is very expensive, the patient was not able to afford it at home. Those supplements are a total enteral formula with enriched nutrient(ACURE EN800)and vitamin-mineral rich drink(V CRESC). The contents of vitamin and mineral in this menu satisfied the dietary reference intakes, though protein was a little low. However, we could keep the price low compared to the formula food. The patient was able to switch over to home LCD therapy with the menu.

  8. Direct Measurement of Initial Enrichment, Burn-up and Cooling Time of Spent Fuel Assembly with a Differential Die-Away Technique Based Instrument

    Energy Technology Data Exchange (ETDEWEB)

    Henzl, Vladimir [Los Alamos National Laboratory; Swinhoe, Martyn T. [Los Alamos National Laboratory; Tobin, Stephen J. [Los Alamos National Laboratory

    2012-07-13

    An outline of this presentation of what a Differential Die-Away (DDA) instrument can do are: (1) Principle of operation of DDA instrument; (2) Determination of initial enrichment (IE) ({sigma} < 5%); (3) Determination of burn up (BU) ({sigma} {approx} 6%); (4) Determination of cooling time (CT) ({sigma} {approx} 20-50%); and (5) DDA instrument as a standalone device. DDA response (fresh fuel vs. spent fuel) is: (1) Fresh fuel => DDA response increases (die-away time is longer) with increasing fissile content; and (2) Spent fuel => DDA response decreases (die-away time is shorter) with higher burn-up (i.e. more neutron absorbers present).

  9. Results of the work on development of research reactor fuel element based on high density fuel with decreased enrichment in uranium-235

    International Nuclear Information System (INIS)

    The work is developed to the branch program on decrease of fuel enrichment in the Russian research reactors. The analysis of results of foreign works and own studies on creating dispersion fuel compositions on the basis of high density uranium compounds is accomplished. The uranium alloys U3Si, U3Si alloys, U-Zr-Nb, U6Fe and U6Fe alloys are chosen for application in further developments. Characteristics of these alloys are given from the viewpoint of their behaviour under irradiation

  10. Ellipse-based shape description and retrieval method

    Institute of Scientific and Technical Information of China (English)

    李向阳; 潘云鹤

    2002-01-01

    Using a group of ellipses to approach the shape contour, a new shape retrieval method is presented in this paper. In order to keep shape-based retrieval invariant to its position, orientation and size, the shape normalization method is presented. From our research, any closed shape contour can be uniquely decomposed into a group of ellipses, and the original shape contour can be re-constructed using the decomposed ellipses. The ellipse-based shape description and similar retrieval method is introduced in this paper. Based on ellipse's contribution to shape contour, the decomposed ellipses are parted into low-order ellipses and high-order ellipses. The low-order ellipses measure the macroscopic feature of a shape contour, and the high-order ellipses measure the microscopic feature. The two-phase shape matching method is given. Through the experiment test, our method has better shape retrieval effect.

  11. ENHANCED GRAPH BASED NORMALIZED CUT METHODS FOR IMAGE SEGMENTATION

    Directory of Open Access Journals (Sweden)

    S.D. Kapade

    2014-11-01

    Full Text Available Image segmentation is one of the important steps in digital image processing. Several algorithms are available for segmenting the images, posing many challenges such as precise criteria and efficient computations. Most of the graph based methods used for segmentation depend on local properties of graphs without considering global impressions of image, which ultimately limits segmentation quality. In this paper, we propose an enhanced graph based normalized cut method for extracting global impression and consistencies in the image. We propose a technique to add flexibility to original recursive normalized two way cut method which was further extended to other graph based methods. The results show that the proposed technique improves segmentation quality as well as requires lesser computational time than the regular normalized cut method.

  12. Evaluation of PCR-based beef sexing methods.

    Science.gov (United States)

    Zeleny, Reinhard; Bernreuther, Alexander; Schimmel, Heinz; Pauwels, Jean

    2002-07-17

    Analysis of the sex of beef meat by fast and reliable molecular methods is an important measure to ensure correct allocation of export refunds, which are considerably higher for male beef meat. Two PCR-based beef sexing methods have been optimized and evaluated. The amelogenin-type method revealed excellent accuracy and robustness, whereas the bovine satellite/Y-chromosome duplex PCR procedure showed more ambiguous results. In addition, an interlaboratory comparison was organized to evaluate currently applied PCR-based sexing methods in European customs laboratories. From a total of 375 samples sent out, only 1 false result was reported (female identified as male). However, differences in the performances of the applied methods became apparent. The collected data contribute to specify technical requirements for a common European beef sexing methodology based on PCR. PMID:12105941

  13. Rare-Cell Enrichment by a Rapid, Label-Free, Ultrasonic Isopycnic Technique for Medical Diagnostics**

    Science.gov (United States)

    Bourquin, Yannyk; Syed, Abeer; Reboud, Julien; Ranford-Cartwright, Lisa C; Barrett, Michael P; Cooper, Jonathan M

    2014-01-01

    One significant challenge in medical diagnostics lies in the development of label-free methods to separate different cells within complex biological samples. Here we demonstrate a generic, low-power ultrasonic separation technique, able to enrich different cell types based upon their physical properties. For malaria, we differentiate between infected and non-infected red blood cells in a fingerprick-sized drop of blood. We are able to achieve an enrichment of circulating cells infected by the ring stage of the parasite over nonparasitized red blood cells by between two and three orders of magnitude in less than 3 seconds (enabling detection at parasitemia levels as low as 0.0005 %). In a second example, we also show that our methods can be used to enrich different cell types, concentrating Trypanosoma in blood at very low levels of infection, on disposable, low-cost chips. PMID:24677583

  14. Rare-cell enrichment by a rapid, label-free, ultrasonic isopycnic technique for medical diagnostics.

    Science.gov (United States)

    Bourquin, Yannyk; Syed, Abeer; Reboud, Julien; Ranford-Cartwright, Lisa C; Barrett, Michael P; Cooper, Jonathan M

    2014-05-26

    One significant challenge in medical diagnostics lies in the development of label-free methods to separate different cells within complex biological samples. Here we demonstrate a generic, low-power ultrasonic separation technique, able to enrich different cell types based upon their physical properties. For malaria, we differentiate between infected and non-infected red blood cells in a fingerprick-sized drop of blood. We are able to achieve an enrichment of circulating cells infected by the ring stage of the parasite over nonparasitized red blood cells by between two and three orders of magnitude in less than 3 seconds (enabling detection at parasitemia levels as low as 0.0005%). In a second example, we also show that our methods can be used to enrich different cell types, concentrating Trypanosoma in blood at very low levels of infection, on disposable, low-cost chips. PMID:24677583

  15. ENHANCED GRAPH BASED NORMALIZED CUT METHODS FOR IMAGE SEGMENTATION

    OpenAIRE

    S.D. Kapade; S.M. Khairnar; B.S. Chaudhari

    2014-01-01

    Image segmentation is one of the important steps in digital image processing. Several algorithms are available for segmenting the images, posing many challenges such as precise criteria and efficient computations. Most of the graph based methods used for segmentation depend on local properties of graphs without considering global impressions of image, which ultimately limits segmentation quality. In this paper, we propose an enhanced graph based normalized cut method for extracting global imp...

  16. Convergence of a residual based artificial viscosity finite element method

    KAUST Repository

    Nazarov, Murtazo

    2013-02-01

    We present a residual based artificial viscosity finite element method to solve conservation laws. The Galerkin approximation is stabilized by only residual based artificial viscosity, without any least-squares, SUPG, or streamline diffusion terms. We prove convergence of the method, applied to a scalar conservation law in two space dimensions, toward an unique entropy solution for implicit time stepping schemes. © 2012 Elsevier B.V. All rights reserved.

  17. The potential of fractional diagonal chromatography strategies for the enrichment of post-translational modifications

    Directory of Open Access Journals (Sweden)

    A. Saskia Venne

    2014-09-01

    Full Text Available More than 450 post-translational modifications (PTMs are known, however, currently only some of those can be enriched and analyzed from complex samples such as cell lysates. Therefore, we need additional methods and concepts to improve our understanding about the dynamic crosstalk of PTMs and the highly context-dependent regulation of protein function by so-called ‘PTM codes’. The mere focus on affinity-based enrichment techniques may not be sufficient to achieve this ambitious goal. However, the complementary use of two-dimensional chromatography-based strategies such as COFRADIC and ChaFRADIC might open new avenues for enriching a variety of so far inaccessible PTMs for large-scale proteome studies.

  18. Phosphopeptide enrichment by immobilized metal affinity chromatography

    DEFF Research Database (Denmark)

    Thingholm, Tine E.; Larsen, Martin R.

    2016-01-01

    Immobilized metal affinity chromatography (IMAC) has been the method of choice for phosphopeptide enrichment prior to mass spectrometric analysis for many years and it is still used extensively in many laboratories. Using the affinity of negatively charged phosphate groups towards positively...

  19. Experimental research on biomass particle combustion characteristics based on oxygen-enriched conditions%基于富氧条件的生物质颗粒燃烧特性实验研究

    Institute of Scientific and Technical Information of China (English)

    朱艳艳; 张林华; 崔永章; 李凯; 吕文超

    2013-01-01

    Oxygen-enriched combustion is an important method to solve the low temperature problem of biomass pellet fuel direct combustion. In order to study the combustion characteristics of biomass pellet fuel in the oxygen-enrich conditions, the paper utilizes thermal gravimetric analysis method to carry out combustion characteristics test about com stalks, cotton stalks and sawdust. Through the analysis of TG-DTG curves of three straws in different oxygen concentrations, we study the effect of oxygen-enriched conditions on combustion characteristics index of the three typical biomass pellet fuels. The results show that the burnout temperature interval of three biomass pellet fuels in the oxygen-enriched conditions reduced nearly 100 ℃ than that in the air, and fixed carbon combustion maximum rate is 2 -2. 75 times that in the air. In addition, fuel combustion characteristic index rises rapidly in the oxygen-enriched conditions, and the increase margin of corn stalk is the largest, so the promoting role of corn stalk is the strongest.%富氧燃烧是解决生物质能源直接燃烧温度低问题的重要方法.文章采用热重分析法分别对玉米、棉秆以及木屑进行燃烧特性试验,通过分析不同氧气浓度下三种秸秆的TG-DTG曲线,研究富氧条件对三种典型生物质颗粒燃料燃烧特性指数的影响.结果表明:富氧条件下三种生物质颗粒燃料燃尽温度区间比空气中减少近100℃,挥发分最大析出速率是空气中的2 ~2.75倍;富氧条件下,燃料的燃烧特性指数迅速上升,且玉米杆的上升幅度最大,表明富氧对玉米杆促进作用最强.

  20. A New Nonlinear Compound Forecasting Method Based on ANN

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    In this paper the compound-forecasting method is discussed. The compound-forecasting method is one of the hotspots in the current predication. Firstly, the compound-forecasting method is introduced and various existing compound-forecasting methods arediscussed. Secondly, the Artificial Neural Network (ANN) is brought in compound-prediction research and a nonlinear compound-prediction model based on ANN is presented. Finally, inorder to avoid irregular weight, a new method is presented which uses principal component analyses to increase the availability of compound-forecasting information. Higherforecasting precision is achieved in practice.

  1. Enrichment of Acinetobacter spp. from food samples.

    Science.gov (United States)

    Carvalheira, Ana; Ferreira, Vânia; Silva, Joana; Teixeira, Paula

    2016-05-01

    Relatively little is known about the role of foods in the chain of transmission of acinetobacters and the occurrence of different Acinetobacter spp. in foods. Currently, there is no standard procedure to recover acinetobacters from food in order to gain insight into the food-related ecology and epidemiology of acinetobacters. This study aimed to assess whether enrichment in Dijkshoorn enrichment medium followed by plating in CHROMagar™ Acinetobacter medium is a useful method for the isolation of Acinetobacter spp. from foods. Recovery of six Acinetobacter species from food spiked with these organisms was compared for two selective enrichment media (Baumann's enrichment and Dijkshoorn's enrichment). Significantly (p foods. Fourteen different presumptive acinetobacters were recovered and assumed to represent nine different strains on the basis of REP-PCR typing. Eight of these strains were identified by rpoB gene analysis as belonging to the species Acinetobacter johnsonii, Acinetobacter calcoaceticus, Acinetobacter guillouiae and Acinetobacter gandensis. It was not possible to identify the species level of one strain which may suggests that it represents a distinct species.

  2. Challenges when developing omega-3 enriched foods

    DEFF Research Database (Denmark)

    Jacobsen, Charlotte

    2010-01-01

    Due to the polyunsaturated nature of omega-3 fatty acids, lipid oxidation is a major challenge when developing omega-3 enriched foods. In multiphase food systems, several factors can affect lipid oxidation and efficacy of antioxidants, added to prevent lipid oxidation. This review discusses...... the influence of important factors such as oil quality, delivery systems for omega-3 fatty acids, processing conditions, composition of the food matrix on lipid oxidation in different omega-3 enriched foods (milk, yoghurt, mayonnaise and mayonnaise-based salads, dressing, energy bar and fish paté). Moreover...

  3. Competition assignment problem algorithm based on Hungarian method

    Institute of Scientific and Technical Information of China (English)

    KONG Chao; REN Yongtai; GE Huiling; DENG Hualing

    2007-01-01

    Traditional Hungarian method can only solve standard assignment problems, while can not solve competition assignment problems. This article emphatically discussed the difference between standard assignment problems and competition assignment problems. The kinds of competition assignment problem algorithms based on Hungarian method and the solutions of them were studied.

  4. Nonparametric forecasting: a comparison of three kernel-based methods

    NARCIS (Netherlands)

    J.G. de Gooijer; E. Matzner-Lober; A. Gannoun

    1998-01-01

    In this paper the use of three kernel-based nonparametric forecasting methods - the conditional mean, the conditional median, and the conditioal mode - is explored in detail. Several issues related to the estimation of these methods are discussed, including the choice of the bandwidth and the type o

  5. Tomographs based on non-conventional radiation sources and methods

    International Nuclear Information System (INIS)

    Computer techniques for tomographic reconstruction of objects X-rayed with a compact plasma focus (PF) are presented. The implemented reconstruction algorithms are based on stochastic searching of solutions of Radon equation, using Genetic Algorithms and Monte Carlo methods. Numerical experiments using actual projections were performed concluding the feasibility of the application of both methods in tomographic reconstruction problem. (author)

  6. The afforestation problem: a heuristic method based on simulated annealing

    DEFF Research Database (Denmark)

    Vidal, Rene Victor Valqui

    1992-01-01

    This paper presents the afforestation problem, that is the location and design of new forest compartments to be planted in a given area. This optimization problem is solved by a two-step heuristic method based on simulated annealing. Tests and experiences with this method are also presented....

  7. A CT Image Segmentation Algorithm Based on Level Set Method

    Institute of Scientific and Technical Information of China (English)

    QU Jing-yi; SHI Hao-shan

    2006-01-01

    Level Set methods are robust and efficient numerical tools for resolving curve evolution in image segmentation. This paper proposes a new image segmentation algorithm based on Mumford-Shah module. The method is used to CT images and the experiment results demonstrate its efficiency and veracity.

  8. A Channelization-Based DOA Estimation Method for Wideband Signals

    Directory of Open Access Journals (Sweden)

    Rui Guo

    2016-07-01

    Full Text Available In this paper, we propose a novel direction of arrival (DOA estimation method for wideband signals with sensor arrays. The proposed method splits the wideband array output into multiple frequency sub-channels and estimates the signal parameters using a digital channelization receiver. Based on the output sub-channels, a channelization-based incoherent signal subspace method (Channelization-ISM and a channelization-based test of orthogonality of projected subspaces method (Channelization-TOPS are proposed. Channelization-ISM applies narrowband signal subspace methods on each sub-channel independently. Then the arithmetic mean or geometric mean of the estimated DOAs from each sub-channel gives the final result. Channelization-TOPS measures the orthogonality between the signal and the noise subspaces of the output sub-channels to estimate DOAs. The proposed channelization-based method isolates signals in different bandwidths reasonably and improves the output SNR. It outperforms the conventional ISM and TOPS methods on estimation accuracy and dynamic range, especially in real environments. Besides, the parallel processing architecture makes it easy to implement on hardware. A wideband digital array radar (DAR using direct wideband radio frequency (RF digitization is presented. Experiments carried out in a microwave anechoic chamber with the wideband DAR are presented to demonstrate the performance. The results verify the effectiveness of the proposed method.

  9. A Channelization-Based DOA Estimation Method for Wideband Signals.

    Science.gov (United States)

    Guo, Rui; Zhang, Yue; Lin, Qianqiang; Chen, Zengping

    2016-01-01

    In this paper, we propose a novel direction of arrival (DOA) estimation method for wideband signals with sensor arrays. The proposed method splits the wideband array output into multiple frequency sub-channels and estimates the signal parameters using a digital channelization receiver. Based on the output sub-channels, a channelization-based incoherent signal subspace method (Channelization-ISM) and a channelization-based test of orthogonality of projected subspaces method (Channelization-TOPS) are proposed. Channelization-ISM applies narrowband signal subspace methods on each sub-channel independently. Then the arithmetic mean or geometric mean of the estimated DOAs from each sub-channel gives the final result. Channelization-TOPS measures the orthogonality between the signal and the noise subspaces of the output sub-channels to estimate DOAs. The proposed channelization-based method isolates signals in different bandwidths reasonably and improves the output SNR. It outperforms the conventional ISM and TOPS methods on estimation accuracy and dynamic range, especially in real environments. Besides, the parallel processing architecture makes it easy to implement on hardware. A wideband digital array radar (DAR) using direct wideband radio frequency (RF) digitization is presented. Experiments carried out in a microwave anechoic chamber with the wideband DAR are presented to demonstrate the performance. The results verify the effectiveness of the proposed method. PMID:27384566

  10. 2H2O incorporation into hepatic acetyl-CoA and de novo lipogenesis as measured by Krebs cycle-mediated 2H-enrichment of glutamate and glutamine.

    Science.gov (United States)

    Silva, Ana Maria; Martins, Fatima; Jones, John G; Carvalho, Rui

    2011-12-01

    Deuterated water is widely used for measuring de novo lipogenesis on the basis of quantifying lipid (2)H-enrichment relative to that of body water. However, incorporation of (2)H-enrichment from body water into newly synthesized lipid molecules is incomplete therefore the true lipid precursor enrichment differs from that of body water. We describe a novel measurement of de novo lipogenesis that is based on a true precursor-product analysis of hepatic acetyl-CoA and triglyceride methyl enrichments from deuterated water. After deuterated water administration to seven in situ and seven perfused livers, acetyl-CoA methyl enrichment was inferred from (2)H nuclear magnetic resonance analysis of hepatic glutamate/glutamine (Glx) enrichment and triglyceride methyl enrichment was directly determined by (2)H nuclear magnetic resonance of triglycerides. Acetyl-CoA (2) H-enrichment was 71% ± 1% that of body water for in situ livers and 53% ± 2% of perfusate water for perfused livers. From the ratio of triglyceride-methyl/acetyl-CoA enrichments, fractional de novo lipogenesis rates of 0.97% ± 0.09%/2 hr and 7.92% ± 1.47%/48 hr were obtained for perfused and in situ liver triglycerides, respectively. Our method reveals that acetyl-CoA enrichment is significantly less than body water both for in situ and perfused livers. Furthermore, the difference between acetyl-CoA and body water enrichments is sensitive to the experimental setting.

  11. A Semantic Retrieval Method Based on the Fuzzy Reasoning

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    This paper gives a semantic fuzzy retrieval method of multimedia object,discusses the principle of fuzzy semantic retrieval technique,presents a fuzzy reasoning mechanism based on the knowledge base,and designs the relevant reasoning algorithms.Researchful results have innovative significance.

  12. Role-based Integration Method of Enterprise Information System

    Institute of Scientific and Technical Information of China (English)

    YU Ming-hui; FEI Qi; CHEN Xue-guang

    2002-01-01

    This paper analyzes the current situation of enterprise information system and methods of system integration at first. Then a role-based analyzing method is proposed. It can help confirm the keystone of the construction of information system and the direction of system integration. At last, a case study on theintegration of material dispatching information system in a large-scale project is presented briefly. It shows that this new method is more effective than the others are.

  13. A New Video Coding Method Based on Improving Detail Regions

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The Moving Pictures Expert Group (MPEG) and H.263 standard coding method is widely used in video compression. However, the visual quality of detail regions such as eyes and mouth is not content in people at the decoder, as far as the conference telephone or videophone is concerned. A new coding method based on improving detail regions is presented in this paper. Experimental results show that this method can improve the visual quality at the decoder.

  14. Uranium enrichment management review: summary of analysis

    Energy Technology Data Exchange (ETDEWEB)

    1981-01-01

    In May 1980, the Assistant Secretary for Resource Applications within the Department of Energy requested that a group of experienced business executives be assembled to review the operation, financing, and management of the uranium enrichment enterprise as a basis for advising the Secretary of Energy. After extensive investigation, analysis, and discussion, the review group presented its findings and recommendations in a report on December 2, 1980. The following pages contain background material on which that final report was based. This report is arranged in chapters that parallel those of the uranium enrichment management review final report - chapters that contain summaries of the review group's discussion and analyses in six areas: management of operations and construction; long-range planning; marketing of enrichment services; financial management; research and development; and general management. Further information, in-depth analysis, and discussion of suggested alternative management practices are provided in five appendices.

  15. Uranium enrichment management review: summary of analysis

    International Nuclear Information System (INIS)

    In May 1980, the Assistant Secretary for Resource Applications within the Department of Energy requested that a group of experienced business executives be assembled to review the operation, financing, and management of the uranium enrichment enterprise as a basis for advising the Secretary of Energy. After extensive investigation, analysis, and discussion, the review group presented its findings and recommendations in a report on December 2, 1980. The following pages contain background material on which that final report was based. This report is arranged in chapters that parallel those of the uranium enrichment management review final report - chapters that contain summaries of the review group's discussion and analyses in six areas: management of operations and construction; long-range planning; marketing of enrichment services; financial management; research and development; and general management. Further information, in-depth analysis, and discussion of suggested alternative management practices are provided in five appendices

  16. Semantically Enriched Web Usage Mining for Predicting User Future Movements

    Directory of Open Access Journals (Sweden)

    Suresh Shirgave

    2013-10-01

    Full Text Available Explosive and quick growth of the World Wide Web has resulted in intricate Web sites, demanding enhanced user skills and sophisticated tools to help the Web user to find the desired information. Finding desired information on the Web has become a critical ingredient of everyday personal, educational, and business life. Thus, there is a demand for more sophisticated tools to help the user to navigate a Web site and find the desired information. The users must be provided with information and services specific to their needs, rather than an undifferentiated mass of information. For discovering interesting and frequent navigation patterns from Web server logs many Web usage mining techniques have been applied. The recommendation accuracy of solely usage based techniques can be improved by integrating Web site content and site structure in the personalization process.Herein, we propose Semantically enriched Web Usage Mining method (SWUM, which combines the fields of Web Usage Mining and Semantic Web. In the proposed method, the undirected graph derived from usage data is enriched with rich semantic information extracted from the Web pages and the Web site structure. The experimental results show that the SWUM generates accurate recommendations with integration of usage, semantic data and Web site structure. The results shows that proposed method is able to achieve 10-20% better accuracy than the solely usage based model, and 5-8% better than an ontology based model.

  17. A method for selecting training samples based on camera response

    Science.gov (United States)

    Zhang, Leihong; Li, Bei; Pan, Zilan; Liang, Dong; Kang, Yi; Zhang, Dawei; Ma, Xiuhua

    2016-09-01

    In the process of spectral reflectance reconstruction, sample selection plays an important role in the accuracy of the constructed model and in reconstruction effects. In this paper, a method for training sample selection based on camera response is proposed. It has been proved that the camera response value has a close correlation with the spectral reflectance. Consequently, in this paper we adopt the technique of drawing a sphere in camera response value space to select the training samples which have a higher correlation with the test samples. In addition, the Wiener estimation method is used to reconstruct the spectral reflectance. Finally, we find that the method of sample selection based on camera response value has the smallest color difference and root mean square error after reconstruction compared to the method using the full set of Munsell color charts, the Mohammadi training sample selection method, and the stratified sampling method. Moreover, the goodness of fit coefficient of this method is also the highest among the four sample selection methods. Taking all the factors mentioned above into consideration, the method of training sample selection based on camera response value enhances the reconstruction accuracy from both the colorimetric and spectral perspectives.

  18. Method of designing developable surface based on engineering requirement

    Institute of Scientific and Technical Information of China (English)

    YANG Ji-xin; LIU Zhe; LIU Jian

    2006-01-01

    The paper deals with the principle of envelope of a one-parameter plane family to design developable surfaces. Three methods of designing developable surfaces are presented. They are designing a developable surface based on one curve on it and its normal line, designing a developable surface based on two curves on it and designing a developable surface based on one curve and one surface. They meet the requirements of engineering fields.

  19. An Efficient Method for Reliability-based Multidisciplinary Design Optimization

    Institute of Scientific and Technical Information of China (English)

    Fan Hui; Li Weiji

    2008-01-01

    Design for modem engineering system is becoming multidisciplinary and incorporates practical uncertainties; therefore, it is necessary to synthesize reliability analysis and the multidiscipLinary design optimization (MDO) techniques for the design of complex engineering system. An advanced first order second moment method-based concurrent subspace optimization approach is proposed based on the comparison and analysis of the existing multidisciplinary optimization techniques and the reliability analysis methods. It is seen through a canard configuration optimization for a three-surface transport that the proposed method is computationally efficient and practical with the least modification to the current deterministic optimization process.

  20. Patch nearfield acoustic holography based on the equivalent source method

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    On the basis of nearfield acoustic holography (NAH) based on the equivalent source method (ESM), patch NAH based on the ESM is proposed. The method overcomes the shortcoming in the conventional NAH that the hologram surface should be larger than the source surface. It need not to discretize the whole source and its measurement need not to cover the whole source. The measurement may be performed over the region of interest, and the reconstruction can be done in the region directly. The method is flexible in applications, stable in computation, and very easy to implement. It has good potential applications in engineering. The nu- merical simulations show the invalidity of the conventional NAH based on the ESM and prove the validities of the proposed method for reconstructing a partial source and the regularization for reducing the error effect of the pressure measured on the hologram surface.

  1. Distance Based Method for Outlier Detection of Body Sensor Networks

    Directory of Open Access Journals (Sweden)

    Haibin Zhang

    2016-01-01

    Full Text Available We propose a distance based method for the outlier detection of body sensor networks. Firstly, we use a Kernel Density Estimation (KDE to calculate the probability of the distance to k nearest neighbors for diagnosed data. If the probability is less than a threshold, and the distance of this data to its left and right neighbors is greater than a pre-defined value, the diagnosed data is decided as an outlier. Further, we formalize a sliding window based method to improve the outlier detection performance. Finally, to estimate the KDE by training sensor readings with errors, we introduce a Hidden Markov Model (HMM based method to estimate the most probable ground truth values which have the maximum probability to produce the training data. Simulation results show that the proposed method possesses a good detection accuracy with a low false alarm rate.

  2. A HMM-Based Method for Vocal Fold Pathology Diagnosis

    Directory of Open Access Journals (Sweden)

    Vahid Majidnezhad

    2012-11-01

    Full Text Available Acoustic analysis is a proper method in vocal fold pathology diagnosis so that it can complement and in some cases replace the other invasive, based on direct vocal fold observations methods. There are different approaches for vocal fold pathology diagnosis. This paper presents a method based on hidden markov model which classifies speeches into two classes: the normal and the pathological. Two hidden markov models are trained based on these two classes of speech and then the trained models are used to classify the dataset. The proposed method is able to classify the speeches with an accuracy of 93.75%. The results of this algorithm provide insights that can help biologists and computer scientists design high-performance system for detection of vocal fold pathology diagnosis.

  3. Optimizing distance-based methods for large data sets

    Science.gov (United States)

    Scholl, Tobias; Brenner, Thomas

    2015-10-01

    Distance-based methods for measuring spatial concentration of industries have received an increasing popularity in the spatial econometrics community. However, a limiting factor for using these methods is their computational complexity since both their memory requirements and running times are in {{O}}(n^2). In this paper, we present an algorithm with constant memory requirements and shorter running time, enabling distance-based methods to deal with large data sets. We discuss three recent distance-based methods in spatial econometrics: the D&O-Index by Duranton and Overman (Rev Econ Stud 72(4):1077-1106, 2005), the M-function by Marcon and Puech (J Econ Geogr 10(5):745-762, 2010) and the Cluster-Index by Scholl and Brenner (Reg Stud (ahead-of-print):1-15, 2014). Finally, we present an alternative calculation for the latter index that allows the use of data sets with millions of firms.

  4. Patch nearfield acoustic holography based on the equivalent source method

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    On the basis of nearfield acoustic holography (NAH) based on the equivalent source method (ESM), patch NAH based on the ESM is proposed. The method overcomes the shortcoming in the conventional NAH that the hologram surface should be larger than the source surface. It need not to discretize the whole source and its measurement need not to cover the whole source. The measurement may be performed over the region of interest, and the reconstruction can be done in the region directly. The method is flexible in applications, stable in computation, and very easy to implement. It has good potential applications in engineering. The numerical simulations show the invalidity of the conventional NAH based on the ESM and prove the validities of the proposed method for reconstructing a partial source and the regularization for reducing the error effect of the pressure measured on the hologram surface.

  5. A new earthquake location method based on the waveform inversion

    CERN Document Server

    Wu, Hao; Huang, Xueyuan; Yang, Dinghui

    2016-01-01

    In this paper, a new earthquake location method based on the waveform inversion is proposed. As is known to all, the waveform misfit function is very sensitive to the phase shift between the synthetic waveform signal and the real waveform signal. Thus, the convergence domain of the conventional waveform based earthquake location methods is very small. In present study, by introducing and solving a simple sub-optimization problem, we greatly expand the convergence domain of the waveform based earthquake location method. According to a large number of numerical experiments, the new method expands the range of convergence by several tens of times. This allows us to locate the earthquake accurately even from some relatively bad initial values.

  6. Folding to Curved Surfaces: A Generalized Design Method and Mechanics of Origami-based Cylindrical Structures

    Science.gov (United States)

    Wang, Fei; Gong, Haoran; Chen, Xi; Chen, C. Q.

    2016-09-01

    Origami structures enrich the field of mechanical metamaterials with the ability to convert morphologically and systematically between two-dimensional (2D) thin sheets and three-dimensional (3D) spatial structures. In this study, an in-plane design method is proposed to approximate curved surfaces of interest with generalized Miura-ori units. Using this method, two combination types of crease lines are unified in one reprogrammable procedure, generating multiple types of cylindrical structures. Structural completeness conditions of the finite-thickness counterparts to the two types are also proposed. As an example of the design method, the kinematics and elastic properties of an origami-based circular cylindrical shell are analysed. The concept of Poisson’s ratio is extended to the cylindrical structures, demonstrating their auxetic property. An analytical model of rigid plates linked by elastic hinges, consistent with numerical simulations, is employed to describe the mechanical response of the structures. Under particular load patterns, the circular shells display novel mechanical behaviour such as snap-through and limiting folding positions. By analysing the geometry and mechanics of the origami structures, we extend the design space of mechanical metamaterials and provide a basis for their practical applications in science and engineering.

  7. Folding to Curved Surfaces: A Generalized Design Method and Mechanics of Origami-based Cylindrical Structures

    Science.gov (United States)

    Wang, Fei; Gong, Haoran; Chen, Xi; Chen, C. Q.

    2016-01-01

    Origami structures enrich the field of mechanical metamaterials with the ability to convert morphologically and systematically between two-dimensional (2D) thin sheets and three-dimensional (3D) spatial structures. In this study, an in-plane design method is proposed to approximate curved surfaces of interest with generalized Miura-ori units. Using this method, two combination types of crease lines are unified in one reprogrammable procedure, generating multiple types of cylindrical structures. Structural completeness conditions of the finite-thickness counterparts to the two types are also proposed. As an example of the design method, the kinematics and elastic properties of an origami-based circular cylindrical shell are analysed. The concept of Poisson’s ratio is extended to the cylindrical structures, demonstrating their auxetic property. An analytical model of rigid plates linked by elastic hinges, consistent with numerical simulations, is employed to describe the mechanical response of the structures. Under particular load patterns, the circular shells display novel mechanical behaviour such as snap-through and limiting folding positions. By analysing the geometry and mechanics of the origami structures, we extend the design space of mechanical metamaterials and provide a basis for their practical applications in science and engineering. PMID:27624892

  8. Folding to Curved Surfaces: A Generalized Design Method and Mechanics of Origami-based Cylindrical Structures.

    Science.gov (United States)

    Wang, Fei; Gong, Haoran; Chen, Xi; Chen, C Q

    2016-01-01

    Origami structures enrich the field of mechanical metamaterials with the ability to convert morphologically and systematically between two-dimensional (2D) thin sheets and three-dimensional (3D) spatial structures. In this study, an in-plane design method is proposed to approximate curved surfaces of interest with generalized Miura-ori units. Using this method, two combination types of crease lines are unified in one reprogrammable procedure, generating multiple types of cylindrical structures. Structural completeness conditions of the finite-thickness counterparts to the two types are also proposed. As an example of the design method, the kinematics and elastic properties of an origami-based circular cylindrical shell are analysed. The concept of Poisson's ratio is extended to the cylindrical structures, demonstrating their auxetic property. An analytical model of rigid plates linked by elastic hinges, consistent with numerical simulations, is employed to describe the mechanical response of the structures. Under particular load patterns, the circular shells display novel mechanical behaviour such as snap-through and limiting folding positions. By analysing the geometry and mechanics of the origami structures, we extend the design space of mechanical metamaterials and provide a basis for their practical applications in science and engineering. PMID:27624892

  9. Determination of U235 enrichment from nuclear fuel by neutronic activation

    International Nuclear Information System (INIS)

    The enrichment of 235U in UO2 pellets samples through the instrumental neutron activation analysis method (I.N.A.A.) was determined. By high resolution gamma-ray spectrometry (H.R.G.S.), from analysis of isotopic ratios between fission products peaks from 235U and 239Np different energies peaks from 238U, the enrichment was achieved. The 'Boatstrap' statistics technique for the analytical results, which is based in shaping results of an unknown distribution to the Gaussian distribution by B replications in interested statistics such as: the mean and its standard error, was introduced. (M.J.C.)

  10. Correction of Misclassifications Using a Proximity-Based Estimation Method

    Science.gov (United States)

    Niemistö, Antti; Shmulevich, Ilya; Lukin, Vladimir V.; Dolia, Alexander N.; Yli-Harja, Olli

    2004-12-01

    An estimation method for correcting misclassifications in signal and image processing is presented. The method is based on the use of context-based (temporal or spatial) information in a sliding-window fashion. The classes can be purely nominal, that is, an ordering of the classes is not required. The method employs nonlinear operations based on class proximities defined by a proximity matrix. Two case studies are presented. In the first, the proposed method is applied to one-dimensional signals for processing data that are obtained by a musical key-finding algorithm. In the second, the estimation method is applied to two-dimensional signals for correction of misclassifications in images. In the first case study, the proximity matrix employed by the estimation method follows directly from music perception studies, whereas in the second case study, the optimal proximity matrix is obtained with genetic algorithms as the learning rule in a training-based optimization framework. Simulation results are presented in both case studies and the degree of improvement in classification accuracy that is obtained by the proposed method is assessed statistically using Kappa analysis.

  11. Correction of Misclassifications Using a Proximity-Based Estimation Method

    Directory of Open Access Journals (Sweden)

    Shmulevich Ilya

    2004-01-01

    Full Text Available An estimation method for correcting misclassifications in signal and image processing is presented. The method is based on the use of context-based (temporal or spatial information in a sliding-window fashion. The classes can be purely nominal, that is, an ordering of the classes is not required. The method employs nonlinear operations based on class proximities defined by a proximity matrix. Two case studies are presented. In the first, the proposed method is applied to one-dimensional signals for processing data that are obtained by a musical key-finding algorithm. In the second, the estimation method is applied to two-dimensional signals for correction of misclassifications in images. In the first case study, the proximity matrix employed by the estimation method follows directly from music perception studies, whereas in the second case study, the optimal proximity matrix is obtained with genetic algorithms as the learning rule in a training-based optimization framework. Simulation results are presented in both case studies and the degree of improvement in classification accuracy that is obtained by the proposed method is assessed statistically using Kappa analysis.

  12. Genetic Diversity through the Looking Glass: Effect of Enrichment Bias

    OpenAIRE

    Dunbar, J.; White, S.; Forney, L

    1997-01-01

    The effect of enrichment bias on the diversity of 2,4-dichlorophenoxyacetate (2,4-D)-degrading (2,4-D(sup+)) bacteria recovered from soil was evaluated by comparing the diversity of isolates obtained by direct plating to the diversity of isolates obtained from 85 liquid batch cultures. By the two methods, a total of 159 isolates were purified from 1 g of soil and divided into populations based on repeated extragenic palindromic sequence PCR (rep-PCR) genomic fingerprints. Approximately 42% of...

  13. Integrated navigation method based on inertial navigation system and Lidar

    Science.gov (United States)

    Zhang, Xiaoyue; Shi, Haitao; Pan, Jianye; Zhang, Chunxi

    2016-04-01

    An integrated navigation method based on the inertial navigational system (INS) and Lidar was proposed for land navigation. Compared with the traditional integrated navigational method and dead reckoning (DR) method, the influence of the inertial measurement unit (IMU) scale factor and misalignment was considered in the new method. First, the influence of the IMU scale factor and misalignment on navigation accuracy was analyzed. Based on the analysis, the integrated system error model of INS and Lidar was established, in which the IMU scale factor and misalignment error states were included. Then the observability of IMU error states was analyzed. According to the results of the observability analysis, the integrated system was optimized. Finally, numerical simulation and a vehicle test were carried out to validate the availability and utility of the proposed INS/Lidar integrated navigational method. Compared with the test result of a traditional integrated navigation method and DR method, the proposed integrated navigational method could result in a higher navigation precision. Consequently, the IMU scale factor and misalignment error were effectively compensated by the proposed method and the new integrated navigational method is valid.

  14. Deployable nuclear fleet based on available quantities of uranium and reactor types – the case of fast reactors started up with enriched uranium

    Directory of Open Access Journals (Sweden)

    Baschwitz Anne

    2016-01-01

    Full Text Available International organizations regularly produce global energy demand scenarios. To account for the increasing population and GDP trends, as well as to encompass evolving energy uses while satisfying constraints on greenhouse gas emissions, long-term installed nuclear power capacity scenarios tend to be more ambitious, even after the Fukushima accident. Thus, the amounts of uranium or plutonium needed to deploy such capacities could be limiting factors. This study first considers light-water reactors (LWR, GEN III using enriched uranium, like most of the current reactor technologies. It then examines the contribution of future fast reactors (FR, GEN IV operating with an initial fissile load and then using depleted uranium and recycling their own plutonium. However, as plutonium is only available in limited quantity since it is only produced in nuclear reactors, the possibility of starting up these Generation IV reactors with a fissile load of enriched uranium is also explored. In one of our previous studies, the uranium consumption of a third-generation reactor like an EPR™ was compared with that of a fast reactor started up with enriched uranium (U5-FR. For a reactor lifespan of 60 years, the U5-FR consumes three times less uranium than the EPR and represents a 60% reduction in terms of separative work units (SWU, though its requirements are concentrated over the first few years of operation. The purpose of this study is to investigate the relevance of U5-FRs in a nuclear fleet deployment configuration. Considering several power demand scenarios and assuming different finite quantities of available natural uranium, this paper examines what types of reactors must be deployed to meet the demand. The deployment of light-water reactors only is not sustainable in the long run. Generation IV reactors are therefore essential. Yet when started up with plutonium, the number of reactors that can be deployed is also limited. In a fleet deployment

  15. NETWORK INTRUSION DETECTION METHOD BASED ON RS-MSVM

    Institute of Scientific and Technical Information of China (English)

    Xiao Yun; Han Chongzhao; Zheng Qinghua; Zhang Junjie

    2006-01-01

    A new method called RS-MSVM (Rough Set and Multi-class Support Vector Machine) is proposed for network intrusion detection. This method is based on rough set followed by MSVM for attribute reduction and classification respectively. The number of attributes of the network data used in this paper is reduced from 41 to 30 using rough set theory. The kernel function of HVDM-RBF (Heterogeneous Value Difference Metric Radial Basis Function), based on the heterogeneous value difference metric of heterogeneous datasets, is constructed for the heterogeneous network data. HVDM-RBF and one-against-one method are applied to build MSVM. DARPA (Defense Advanced Research Projects Agency) intrusion detection evaluating data were used in the experiment. The testing results show that our method outperforms other methods mentioned in this paper on six aspects: detection accuracy, number of support vectors, false positive rate, false negative rate, training time and testing time.

  16. Wind Turbine Gearbox Fault Diagnosis Method Based on Riemannian Manifold

    Directory of Open Access Journals (Sweden)

    Shoubin Wang

    2014-01-01

    Full Text Available As multivariate time series problems widely exist in social production and life, fault diagnosis method has provided people with a lot of valuable information in the finance, hydrology, meteorology, earthquake, video surveillance, medical science, and other fields. In order to find faults in time sequence quickly and efficiently, this paper presents a multivariate time series processing method based on Riemannian manifold. This method is based on the sliding window and uses the covariance matrix as a descriptor of the time sequence. Riemannian distance is used as the similarity measure and the statistical process control diagram is applied to detect the abnormity of multivariate time series. And the visualization of the covariance matrix distribution is used to detect the abnormity of mechanical equipment, leading to realize the fault diagnosis. With wind turbine gearbox faults as the experiment object, the fault diagnosis method is verified and the results show that the method is reasonable and effective.

  17. NONLINEAR DATA RECONCILIATION METHOD BASED ON KERNEL PRINCIPAL COMPONENT ANALYSIS

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    In the industrial process situation, principal component analysis (PCA) is a general method in data reconciliation.However, PCA sometime is unfeasible to nonlinear feature analysis and limited in application to nonlinear industrial process.Kernel PCA (KPCA) is extension of PCA and can be used for nonlinear feature analysis.A nonlinear data reconciliation method based on KPCA is proposed.The basic idea of this method is that firstly original data are mapped to high dimensional feature space by nonlinear function, and PCA is implemented in the feature space.Then nonlinear feature analysis is implemented and data are reconstructed by using the kernel.The data reconciliation method based on KPCA is applied to ternary distillation column.Simulation results show that this method can filter the noise in measurements of nonlinear process and reconciliated data can represent the true information of nonlinear process.

  18. Consistency-based ellipse detection method for complicated images

    Science.gov (United States)

    Zhang, Lijun; Huang, Xuexiang; Feng, Weichun; Liang, Shuli; Hu, Tianjian

    2016-05-01

    Accurate ellipse detection in complicated images is a challenging problem due to corruptions from image clutter, noise, or occlusion of other objects. To cope with this problem, an edge-following-based ellipse detection method is proposed which promotes the performances of the subprocesses based on consistency. The ellipse detector models edge connectivity by line segments and exploits inconsistent endpoints of the line segments to split the edge contours into smooth arcs. The smooth arcs are further refined with a novel arc refinement method which iteratively improves the consistency degree of the smooth arc. A two-phase arc integration method is developed to group disconnected elliptical arcs belonging to the same ellipse, and two constraints based on consistency are defined to increase the effectiveness and speed of the merging process. Finally, an efficient ellipse validation method is proposed to evaluate the saliency of the elliptic hypotheses. Detailed evaluation on synthetic images shows that our method outperforms other state-of-the-art ellipse detection methods in terms of effectiveness and speed. Additionally, we test our detector on three challenging real-world datasets. The F-measure score and execution time of results demonstrate that our method is effective and fast in complicated images. Therefore, the proposed method is suitable for practical applications.

  19. Expansion of U. S. uranium enrichment capacity. Final environmental statement

    Energy Technology Data Exchange (ETDEWEB)

    1976-04-01

    Reasonably foreseeable environmental, social, economic, and technological costs and benefits of postulated expansion of U. S. enrichment capacity through the year 2000 and reasonably available alternatives to such expansion are described. Both the gas centrifuge and gaseous diffusion methods for the enrichment of uranium are considered in this impact assessment. (JGB)

  20. Targeted enrichment of genomic DNA regions for next generation sequencing

    NARCIS (Netherlands)

    Mertens, F.; El-Sharawy, A.; Sauer, S.; Van Helvoort, J.; Van der Zaag, P.J.; Franke, A.; Nilsson, M.; Lehrach. H.; Brookes, A.

    2011-01-01

    In this review we discuss the latest targeted enrichment methods, and aspects of their utilization along with second generation sequencing for complex genome analysis. In doing so we provide an overview of issues involved in detecting genetic variation, for which targeted enrichment has become a pow

  1. A perceptual hashing method based on luminance features

    Science.gov (United States)

    Luo, Siqing

    2011-02-01

    With the rapid development of multimedia technology, content based searching and image authentication has become strong requirements. Image hashing technique has been proposed to meet them. In this paper, an RST (Rotation, Scaling, and Translation) resistant image hash algorithm is presented. In this method, the geometric distortions are extracted and adjusted by normalization. The features of the image are generated from the high-rank moments of luminance distribution. With the help of the efficient image representation capability of high-rank moments, the robustness and discrimination of proposed method are improved. The experimental results show that the proposed method is better than some existing methods in robustness under rotation attack.

  2. Color Restoration Method Based on Spectral Information Using Normalized Cut

    Institute of Scientific and Technical Information of China (English)

    Tetsuro Morimoto; Tohru Mihashi; Katsushi Ikeuchi

    2008-01-01

    This paper proposes a novel method for color restoration that can effectively apply accurate color based on spectral information to a segmented image using the normalized cut technique. Using the proposed method, we can obtain a digital still camera image and spectral information in different environments. Also, it is not necessary to estimate reflectance spectra using a spectral database such as other methods. The synthesized images are accurate and high resolution. The proposed method effectively works in making digital archive contents. Some experimental results are demonstrated in this paper.

  3. Analysis of fault detection method based on predictive filter approach

    Institute of Scientific and Technical Information of China (English)

    LI Ji; ZHANG Hongyue

    2005-01-01

    A new detection method for component faults based on predictive filters together with the fault detectability, false alarm rate, missed alarm rate and upper bound of detection time are proposed. The efficiency of the method is illustrated by a simulation example of a second-order system. It is shown that the fault detection method using predictive filters has a small delay, a low false alarm rate and a low missed alarm rate. Furthermore the filter can give accurate estimates of states even after a fault occurs. The real-time estimation provided by this method can also be used for fault tolerant control.

  4. Assembly and Irradiation Modeling of Residual Stresses in Low-Enriched Uranium Foil-Based Annular Targets for Molybdenum-99 Production

    Directory of Open Access Journals (Sweden)

    Srisharan G. Govindarajan

    2013-01-01

    Full Text Available This paper considers a composite cylindrical structure, with low-enriched uranium (LEU foil enclosed between two aluminum 6061-T6 cylinders. A recess is cut all around the outer circumference of the inner tube to accommodate the LEU foil of open-cross section. To obtain perfect contact at the interfaces of the foil and the tubes, an internal pressure is applied to the inner tube, thereby plastically and elastically deforming it. The residual stresses resulting from the assembly process are used along with a thermal stress model to predict the stress margins in the cladding during irradiation. The whole process was simulated as a steady-state two-dimensional problem using the commercial finite element code Abaqus FEA. The irradiation behavior of the annular target has been presented, and the effect of the assembly residual stresses has been discussed.

  5. Enrichment and identification of glycoproteins in human saliva using lectin magnetic bead arrays.

    Science.gov (United States)

    Caragata, Michael; Shah, Alok K; Schulz, Benjamin L; Hill, Michelle M; Punyadeera, Chamindie

    2016-03-15

    Aberrant glycosylation of proteins is a hallmark of tumorigenesis and could provide diagnostic value in cancer detection. Human saliva is an ideal source of glycoproteins due to the relatively high proportion of glycosylated proteins in the salivary proteome. Moreover, saliva collection is noninvasive and technically straightforward, and the sample collection and storage is relatively easy. Although differential glycosylation of proteins can be indicative of disease states, identification of differential glycosylation from clinical samples is not trivial. To facilitate salivary glycoprotein biomarker discovery, we optimized a method for differential glycoprotein enrichment from human saliva based on lectin magnetic bead arrays (saLeMBA). Selected lectins from distinct reactivity groups were used in the saLeMBA platform to enrich salivary glycoproteins from healthy volunteer saliva. The technical reproducibility of saLeMBA was analyzed with liquid chromatography-tandem mass spectrometry (LC-MS/MS) to identify the glycosylated proteins enriched by each lectin. Our saLeMBA platform enabled robust glycoprotein enrichment in a glycoprotein- and lectin-specific manner consistent with known protein-specific glycan profiles. We demonstrated that saLeMBA is a reliable method to enrich and detect glycoproteins present in human saliva.

  6. A reservoir skeleton-based multiple point geostatistics method

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Traditional stochastic reservoir modeling,including object-based and pixel-based methods,cannot solve the problem of reproducing continuous and curvilinear reservoir objects. The paper first dives into the various stochastic modeling methods and extracts their merits,then proposes the skeleton-based multiple point geostatistics(SMPS) for the fluvial reservoir. The core idea is using the skeletons of reservoir objects to restrict the selection of data patterns. The skeleton-based multiple point geostatistics consists of two steps. First,predicting the channel skeleton(namely,channel centerline) by using the method in object-based modeling. The paper proposes a new method of search window to predict the skeleton. Then forecasting the distributions of reservoir objects using multiple point geostatistics with the restriction of channel skeleton. By the restriction of channel centerline,the selection of data events will be more reasonable and the realization will be achieved more really. The checks by the conceptual model and the real reservoir show that SMPS is much better than Sisim(sequential indicator simulation) ,Snesim(Single Normal Equation Simulation) and Simpat(simulation with patterns) in building the fluvial reservoir model. This new method will contribute to both the theoretical research of stochastic modeling and the oilfield developments of constructing highly precise reservoir geological models.

  7. a Minimum Spanning Tree Based Method for Uav Image Segmentation

    Science.gov (United States)

    Wang, Ping; Wei, Zheng; Cui, Weihong; Lin, Zhiyong

    2016-06-01

    This paper proposes a Minimum Span Tree (MST) based image segmentation method for UAV images in coastal area. An edge weight based optimal criterion (merging predicate) is defined, which based on statistical learning theory (SLT). And we used a scale control parameter to control the segmentation scale. Experiments based on the high resolution UAV images in coastal area show that the proposed merging predicate can keep the integrity of the objects and prevent results from over segmentation. The segmentation results proves its efficiency in segmenting the rich texture images with good boundary of objects.

  8. NOVEL RADAR SIGNAL SORTING METHOD BASED ON GEOMETRIC COVERING

    Institute of Scientific and Technical Information of China (English)

    万建; 国强; 宋文明

    2013-01-01

    With the increase of complexity of electromagnetic environment and continuous appearance of advanced system radars ,signals received by radar reconnaissance receivers become even more intensive and complex .There-fore ,traditional radar sorting methods based on neural network algorithms and support vector machine (SVM ) cannot process them effectively .Aiming at solving this problem ,a novel radar signal sorting method based on the cloud model theory and the geometric covering algorithm is proposed .By applying the geometric covering algo-rithm to divide input signals into different covering domains based on their distribution characteristics ,the method can overcome a typical problem that it is easy for traditional sorting algorithms to fall into the local extrema due to the use of complex nonlinear equation to describe input signals .The method uses the cloud model to describe the membership degree between signals to be sorted and their covering domains ,thus it avoids the disadvantage that traditional sorting methods based on hard clustering cannot deinterleave the signal samples with overlapped param-eters .Experimental results show that the presented method can effectively sort advanced system radar signals with overlapped parameters in complex electromagnetic environment .

  9. A flower image retrieval method based on ROI feature

    Institute of Scientific and Technical Information of China (English)

    洪安祥; 陈刚; 李均利; 池哲儒; 张亶

    2004-01-01

    Flower image retrieval is a very important step for computer-aided plant species recognition.In this paper,we propose an efficient segmentation method based on color clustering and domain knowledge to extract flower regions from flower images.For flower retrieval,we use the color histogram of a flower region to characterize the color features of flower and two shape-based features sets,Centroid-Contour Distance(CCD)and Angle Code Histogram(ACH),to characterize the shape features of a flower contour.Experimental results showed that our flower region extraction method based on color clustering and domain knowledge can produce accurate flower regions.Flower retrieval results on a database of 885 flower images collected from 14 plant species showed that our Region-of-Interest(ROD based retrieval approach using both color and shape features can perform better than a method based on the global color histogram proposed by Swain and Ballard(1991)and a method based on domain knowledge-driven segmentation and color names proposed by Das et al.(1999).

  10. A flower image retrieval method based on ROI feature

    Institute of Scientific and Technical Information of China (English)

    洪安祥; 陈刚; 李均利; 池哲儒; 张亶

    2004-01-01

    Flower image retrieval is a very important step for computer-aided plant species recognition. In this paper, we propose an efficient segmentation method based on color clustering and domain knowledge to extract flower regions from flower images. For flower retrieval, we use the color histogram of a flower region to characterize the color features of flower and two shape-based features sets, Centroid-Contour Distance (CCD) and Angle Code Histogram (ACH), to characterize the shape features of a flower contour. Experimental results showed that our flower region extraction method based on color clustering and domain knowledge can produce accurate flower regions. Flower retrieval results on a database of 885 flower images collected from 14 plant species showed that our Region-of-Interest (ROI) based retrieval approach using both color and shape features can perform better than a method based on the global color histogram proposed by Swain and Ballard (1991) and a method based on domain knowledge-driven segmentation and color names proposed by Das et al.(1999).

  11. Facial Feature Extraction Method Based on Coefficients of Variances

    Institute of Scientific and Technical Information of China (English)

    Feng-Xi Song; David Zhang; Cai-Kou Chen; Jing-Yu Yang

    2007-01-01

    Principal Component Analysis (PCA) and Linear Discriminant Analysis (LDA) are two popular feature ex- traction techniques in statistical pattern recognition field. Due to small sample size problem LDA cannot be directly applied to appearance-based face recognition tasks. As a consequence, a lot of LDA-based facial feature extraction techniques are proposed to deal with the problem one after the other. Nullspace Method is one of the most effective methods among them. The Nullspace Method tries to find a set of discriminant vectors which maximize the between-class scatter in the null space of the within-class scatter matrix. The calculation of its discriminant vectors will involve performing singular value decomposition on a high-dimensional matrix. It is generally memory- and time-consuming. Borrowing the key idea in Nullspace method and the concept of coefficient of variance in statistical analysis we present a novel facial feature extraction method, i.e., Discriminant based on Coefficient of Variance (DCV) in this paper. Experimental results performed on the FERET and AR face image databases demonstrate that DCV is a promising technique in comparison with Eigenfaces, Nullspace Method, and other state-of-the-art facial feature extraction methods.

  12. Development Issues on Linked Data Weblog Enrichment

    Science.gov (United States)

    Ruiz-Rube, Iván; Cornejo, Carlos M.; Dodero, Juan Manuel; García, Vicente M.

    In this paper, we describe the issues found during the development of LinkedBlog, a Linked Data extension for WordPress blogs. This extension enables to enrich text-based and video information contained in blog entries with RDF triples that are suitable to be stored, managed and exploited by other web-based applications. The issues have to do with the generality, usability, tracking, depth, security, trustiness and performance of the linked data enrichment process. The presented annotation approach aims at maintaining web-based contents independent from the underlying ontological model, by providing a loosely coupled RDFa-based approach in the linked data application. Finally, we detail how the performance of annotations can be improved through a semantic reasoner.

  13. Profile of World Uranium Enrichment Programs-2009

    Energy Technology Data Exchange (ETDEWEB)

    Laughter, Mark D [ORNL

    2009-04-01

    . It is based entirely on open-source information, which is dependent on published sources and may therefore not be completely accurate or reflect the most recent developments. Consequently, readers should not assume that information cited here has the endorsement of either ORNL or the U.S. Department of Energy. We are merely reporting what's been reported. In addition, this report briefly describes some of the safeguards techniques being used at various enrichment plants, including implementation of HSP recommendations.

  14. Quaternion-based discriminant analysis method for color face recognition.

    Science.gov (United States)

    Xu, Yong

    2012-01-01

    Pattern recognition techniques have been used to automatically recognize the objects, personal identities, predict the function of protein, the category of the cancer, identify lesion, perform product inspection, and so on. In this paper we propose a novel quaternion-based discriminant method. This method represents and classifies color images in a simple and mathematically tractable way. The proposed method is suitable for a large variety of real-world applications such as color face recognition and classification of the ground target shown in multispectrum remote images. This method first uses the quaternion number to denote the pixel in the color image and exploits a quaternion vector to represent the color image. This method then uses the linear discriminant analysis algorithm to transform the quaternion vector into a lower-dimensional quaternion vector and classifies it in this space. The experimental results show that the proposed method can obtain a very high accuracy for color face recognition. PMID:22937054

  15. Testability integrated evaluation method based on testability virtual test data

    Directory of Open Access Journals (Sweden)

    Liu Guanjun

    2014-02-01

    Full Text Available Testability virtual test is a new test method for testability verification, which has the advantages such as low cost, few restrictions and large sample of test data. It can be used to make up the deficiency of testability physical test. In order to take the advantage of testability virtual test data effectively and to improve the accuracy of testability evaluation, a testability integrated evaluation method is proposed in this paper based on testability virtual test data. Considering the characteristic of testability virtual test data, the credibility analysis method for testability virtual test data is studied firstly. Then the integrated calculation method is proposed fusing the testability virtual and physical test data. Finally, certain helicopter heading and attitude system is presented to demonstrate the proposed method. The results show that the testability integrated evaluation method is feasible and effective.

  16. Testability integrated evaluation method based on testability virtual test data

    Institute of Scientific and Technical Information of China (English)

    Liu Guanjun; Zhao Chenxu; Qiu Jing; Zhang Yong

    2014-01-01

    Testability virtual test is a new test method for testability verification, which has the advantages such as low cost, few restrictions and large sample of test data. It can be used to make up the deficiency of testability physical test. In order to take the advantage of testability virtual test data effectively and to improve the accuracy of testability evaluation, a testability integrated eval-uation method is proposed in this paper based on testability virtual test data. Considering the char-acteristic of testability virtual test data, the credibility analysis method for testability virtual test data is studied firstly. Then the integrated calculation method is proposed fusing the testability vir-tual and physical test data. Finally, certain helicopter heading and attitude system is presented to demonstrate the proposed method. The results show that the testability integrated evaluation method is feasible and effective.

  17. Preconditioned WR-LMF-based method for ODE systems

    Science.gov (United States)

    Jin, Xiao-Qing; Sin, Vai-Kuong; Song, Li-Li

    2004-01-01

    The waveform relaxation (WR) method was developed as an iterative method for solving large systems of ordinary differential equations (ODEs). In each WR iteration, we are required to solve a system of ODEs. We then introduce the boundary value method (BVM) which is a relatively new method based on the linear multistep formulae to solve ODEs. In particular, we apply the generalized minimal residual method with the Strang-type block-circulant preconditioner for solving linear systems arising from the application of BVMs to each WR iteration. It is demonstrated that these techniques are very effective in speeding up the convergence rate of the resulting iterative processes. Numerical experiments are presented to illustrate the effectiveness of our methods.

  18. Enrichment of osteosarcoma stem cells by chemotherapy

    Institute of Scientific and Technical Information of China (English)

    Qing-Lian Tang; Yi Liang; Xian-Biao Xie; Jun-Qiang Yin; Chang-Ye Zou; Zhi-Qiang Zhao; Jing-Nan Shen; Jin Wang

    2011-01-01

    Osteosamoma is the most common primary malignant bone cancer in children and adolescents. Emerging evidence has suggested that the capability of a tumor to grow is driven by a small subset of cells within a tumor, termed cancer stem cells (CSCs). Although several methods have been explored to identify or enrich CSCs in osteosarcoma, these methods sometimes seem impractical, and chemotherapy enrichment for CSCs in osteosarcoma is rarely investigated. In the present study, we found that short exposure to chemotherapy could change the morphology of osteosarcoma cells and increase sarcosphere formation in vitro, as well as increase tumor formation in vivo. Furthermore, methotrexate (MTX)-resistant U2OS/MTX300 osteosarcoma cells were larger in size and grew much more tightly than parental U2OS cells. More importantly, U2OS/MTX300 cells possessed a higher potential to generate sarcospheres in serum-free conditions compared to parental U2OS cells. Also, U2OS/MTX300 cells exhibited the side population (SP) phenotype and expressed CSC surface markers CD117 and Stro-1. Notably, U2OS/ MTX300 cells showed a substantially higher tumorigenicity in nude mice relative to U2OS cells. Therefore, we conclude that chemotherapy enrichment is a feasible and practical way to enrich osteosamoma stem cells.

  19. A hybrid method for pancreas extraction from CT image based on level set methods.

    Science.gov (United States)

    Jiang, Huiyan; Tan, Hanqing; Fujita, Hiroshi

    2013-01-01

    This paper proposes a novel semiautomatic method to extract the pancreas from abdominal CT images. Traditional level set and region growing methods that request locating initial contour near the final boundary of object have problem of leakage to nearby tissues of pancreas region. The proposed method consists of a customized fast-marching level set method which generates an optimal initial pancreas region to solve the problem that the level set method is sensitive to the initial contour location and a modified distance regularized level set method which extracts accurate pancreas. The novelty in our method is the proper selection and combination of level set methods, furthermore an energy-decrement algorithm and an energy-tune algorithm are proposed to reduce the negative impact of bonding force caused by connected tissue whose intensity is similar with pancreas. As a result, our method overcomes the shortages of oversegmentation at weak boundary and can accurately extract pancreas from CT images. The proposed method is compared to other five state-of-the-art medical image segmentation methods based on a CT image dataset which contains abdominal images from 10 patients. The evaluated results demonstrate that our method outperforms other methods by achieving higher accuracy and making less false segmentation in pancreas extraction.

  20. A SUBARRAY-SYNTHESIS BASED 2D DOA ESTIMATION METHOD

    Institute of Scientific and Technical Information of China (English)

    Xu Wenlong; Jiang Wei; Li Zengfu; Shang Yong; Xiang Haige

    2006-01-01

    In some satellite communications, we need to perform Direction Of Arrival (DOA) angle estimation under the restriction that the number of receivers is less than that of the array elements in an array antenna.To solve the conundrum, a method named subarray-synthesis-based Two-Dimensional DOA (2D DOA) angle estimation is proposed. In the method, firstly, the array antenna is divided into a series of subarray antennas based on the total number of receivers; secondly, the subarray antennas' output covariance matrices are estimated; thirdly, an equivalent covariance matrix is synthesized based on the subarray output covariance matrices; then 2D DOA estimation is performed. Monte Carlo simulations showed that the estimation method is effective.

  1. International Conference on Robust Rank-Based and Nonparametric Methods

    CERN Document Server

    McKean, Joseph

    2016-01-01

    The contributors to this volume include many of the distinguished researchers in this area. Many of these scholars have collaborated with Joseph McKean to develop underlying theory for these methods, obtain small sample corrections, and develop efficient algorithms for their computation. The papers cover the scope of the area, including robust nonparametric rank-based procedures through Bayesian and big data rank-based analyses. Areas of application include biostatistics and spatial areas. Over the last 30 years, robust rank-based and nonparametric methods have developed considerably. These procedures generalize traditional Wilcoxon-type methods for one- and two-sample location problems. Research into these procedures has culminated in complete analyses for many of the models used in practice including linear, generalized linear, mixed, and nonlinear models. Settings are both multivariate and univariate. With the development of R packages in these areas, computation of these procedures is easily shared with r...

  2. Image mosaic method based on SIFT features of line segment.

    Science.gov (United States)

    Zhu, Jun; Ren, Mingwu

    2014-01-01

    This paper proposes a novel image mosaic method based on SIFT (Scale Invariant Feature Transform) feature of line segment, aiming to resolve incident scaling, rotation, changes in lighting condition, and so on between two images in the panoramic image mosaic process. This method firstly uses Harris corner detection operator to detect key points. Secondly, it constructs directed line segments, describes them with SIFT feature, and matches those directed segments to acquire rough point matching. Finally, Ransac method is used to eliminate wrong pairs in order to accomplish image mosaic. The results from experiment based on four pairs of images show that our method has strong robustness for resolution, lighting, rotation, and scaling. PMID:24511326

  3. Image Mosaic Method Based on SIFT Features of Line Segment

    Directory of Open Access Journals (Sweden)

    Jun Zhu

    2014-01-01

    Full Text Available This paper proposes a novel image mosaic method based on SIFT (Scale Invariant Feature Transform feature of line segment, aiming to resolve incident scaling, rotation, changes in lighting condition, and so on between two images in the panoramic image mosaic process. This method firstly uses Harris corner detection operator to detect key points. Secondly, it constructs directed line segments, describes them with SIFT feature, and matches those directed segments to acquire rough point matching. Finally, Ransac method is used to eliminate wrong pairs in order to accomplish image mosaic. The results from experiment based on four pairs of images show that our method has strong robustness for resolution, lighting, rotation, and scaling.

  4. Analysis of Dynamic Modeling Method Based on Boundary Element

    Directory of Open Access Journals (Sweden)

    Xu-Sheng Gan

    2013-07-01

    Full Text Available The aim of this study was to study an improved dynamic modeling method based on a Boundary Element Method (BEM. The dynamic model was composed of the elements such as the beam element, plate element, joint element, lumped mass and spring element by the BEM. An improved dynamic model of a machine structure was established based on plate-beam element system mainly. As a result, the dynamic characteristics of a machine structure were analyzed and the comparison of computational results and experimental’s showed the modeling method was effective. The analyses indicate that the introduced method inaugurates a good way for analyzing dynamic characteristics of a machine structure efficiently.

  5. A Triangle Mesh Standardization Method Based on Particle Swarm Optimization.

    Science.gov (United States)

    Wang, Wuli; Duan, Liming; Bai, Yang; Wang, Haoyu; Shao, Hui; Zhong, Siyang

    2016-01-01

    To enhance the triangle quality of a reconstructed triangle mesh, a novel triangle mesh standardization method based on particle swarm optimization (PSO) is proposed. First, each vertex of the mesh and its first order vertices are fitted to a cubic curve surface by using least square method. Additionally, based on the condition that the local fitted surface is the searching region of PSO and the best average quality of the local triangles is the goal, the vertex position of the mesh is regulated. Finally, the threshold of the normal angle between the original vertex and regulated vertex is used to determine whether the vertex needs to be adjusted to preserve the detailed features of the mesh. Compared with existing methods, experimental results show that the proposed method can effectively improve the triangle quality of the mesh while preserving the geometric features and details of the original mesh. PMID:27509129

  6. Nearfield acoustic holography based on the equivalent source method

    Institute of Scientific and Technical Information of China (English)

    BI Chuanxing; CHEN Xinzhao; CHEN Jian; ZHOU Rong

    2005-01-01

    On the basis of the nearfield acoustic holography (NAH) based on the distributed source boundary point method (DSBPM), a novel NAH based on the equivalent source method (ESM) is proposed. The theoretical model of the proposed method is established at first. And then, the error sensitivity and the reconstruction problems of a multi-source acoustic field and a semi-free acoustic field are analyzed, and the corresponding treatment methods are proposed. Subsequently, an experiment on a speaker is investigated to validate the feasibility and correctness of the method. In the method, no discretization is needed on the boundary of the vibrating body. The acoustic field is predicted directly by a set of weighted equivalent sources located inside the vibrating body. Therefore, the variable interpolation, the treatments of singular integrals and non-uniqueness of solutions in the characteristic wave number are avoided. Additionally, the method is adapted to arbitrary-shaped source, so it is really a meshless method. Furthermore, there are such merits as the simple principle, the high calculation efficiency and precision. It is valuabe for the NAH to be applied in the practical engineering field.

  7. Local coding based matching kernel method for image classification.

    Directory of Open Access Journals (Sweden)

    Yan Song

    Full Text Available This paper mainly focuses on how to effectively and efficiently measure visual similarity for local feature based representation. Among existing methods, metrics based on Bag of Visual Word (BoV techniques are efficient and conceptually simple, at the expense of effectiveness. By contrast, kernel based metrics are more effective, but at the cost of greater computational complexity and increased storage requirements. We show that a unified visual matching framework can be developed to encompass both BoV and kernel based metrics, in which local kernel plays an important role between feature pairs or between features and their reconstruction. Generally, local kernels are defined using Euclidean distance or its derivatives, based either explicitly or implicitly on an assumption of Gaussian noise. However, local features such as SIFT and HoG often follow a heavy-tailed distribution which tends to undermine the motivation behind Euclidean metrics. Motivated by recent advances in feature coding techniques, a novel efficient local coding based matching kernel (LCMK method is proposed. This exploits the manifold structures in Hilbert space derived from local kernels. The proposed method combines advantages of both BoV and kernel based metrics, and achieves a linear computational complexity. This enables efficient and scalable visual matching to be performed on large scale image sets. To evaluate the effectiveness of the proposed LCMK method, we conduct extensive experiments with widely used benchmark datasets, including 15-Scenes, Caltech101/256, PASCAL VOC 2007 and 2011 datasets. Experimental results confirm the effectiveness of the relatively efficient LCMK method.

  8. [Selective enrichment of iridoid glucosides in Hedyotis diffusa Willd. by tandem solid phase extraction].

    Science.gov (United States)

    Zhang, Feng; Guo, Zhimou; Zhang, Feifang; Xue, Xingya; Liang, Xinmiao

    2009-07-01

    A method for selective enrichment of iridoid glucosides in Hedyotis diffusa Willd. by tandem solid phase extraction (SPE) was developed. Oligo(ethylene glycol) (OEG) is a novel type of separation material made in this laboratory. The differences of the surface chemical structures between OEG material and ODS material resulted in their different retention capabilities for iridoid glucosides. Based on the differences, an OEG-ODS solid phase extraction method was designed for selective enrichment of iridoid glucosides. The water extract (150.28 mg) of Hedyotis diffusa Willd. was precipitated by ethanol, and an aliquot (27.03 mg) of the product from the supernatant solution was loaded onto an OEG cartridge and rinsed by 5 mL water. Then, the rinsing solution was loaded onto an ODS cartridge. After it was washed by 5 mL water and eluted by 5 mL methanol, 4.01 mg final product was obtained from the methanol eluent. All the products were characterized by ultra performance liquid chromatography (UPLC), and 14 representative peaks of iridoid glucosides were found. The enrichment results were proved effective by directly comparing the chromatograms each step. To further characterize the enrichment efficiency, the changes of the peak area of iridoid glucosides were investigated. The results showed that the content of 14 iridoid glucosides in the final product reached 6.10 times its original proportion in water extraction product and their recovery was 50.1% on average. Therefore, the iridoid glucosides can be enriched by the tandem solid phase extraction method from water extracting-ethanol precipitating solution of Hedyotis diffusa Willd. with a good selectivity and an acceptable recovery. The proposed method has the advantages of high enrichment efficiency and simple operation. PMID:19938499

  9. XML-based product information processing method for product design

    Science.gov (United States)

    Zhang, Zhen Yu

    2012-01-01

    Design knowledge of modern mechatronics product is based on information processing as the center of the knowledge-intensive engineering, thus product design innovation is essentially the knowledge and information processing innovation. Analysis of the role of mechatronics product design knowledge and information management features, a unified model of XML-based product information processing method is proposed. Information processing model of product design includes functional knowledge, structural knowledge and their relationships. For the expression of product function element, product structure element, product mapping relationship between function and structure based on the XML model are proposed. The information processing of a parallel friction roller is given as an example, which demonstrates that this method is obviously helpful for knowledge-based design system and product innovation.

  10. CONSTRUCTION METHOD OF KNOWLEDGE MAP BASED ON DESIGN PROCESS

    Institute of Scientific and Technical Information of China (English)

    SU Hai; JIANG Zuhua

    2007-01-01

    Due to the increasing amount and complexity of knowledge in product design, the knowledge map based on design process is presented as a tool to reuse product design process, promote the product design knowledge sharing. The relationship between design task flow and knowledge flow is discussed; A knowledge organizing method based on design task decomposition and a visualization method to support the knowledge retrieving and sharing in product design are proposed. And a knowledge map system to manage the knowledge in product design process is built with Visual C++ and SVG. Finally, a brief case study is provided to illustrate the construction and application of knowledge map in fuel pump design.

  11. Dynamic Filtering Method for GPS Based on Multi-Scale

    Directory of Open Access Journals (Sweden)

    Tingjun Li

    2013-01-01

    Full Text Available Aiming at GPS dynamic filtering method, this paper uses the method of multi-scale analysis, combines the “current” statistical model of automotive carrier with multi-scale signal transformation which is based on statistical characteristic, establishes the new algorithm of multi-scale data fusion for GPS dynamic filter combining with normal Kalman filter algorithm, at last achieves the optimal fusion estimated value of the target states based on global information at the finest scale. When the above algorithm is used to GPS dynamic filter, the simulated results show that the proposed algorithm can effectively increase estimated precision of target states compared with the conventional KF.

  12. An Image Encryption Method Based on Bit Plane Hiding Technology

    Institute of Scientific and Technical Information of China (English)

    LIU Bin; LI Zhitang; TU Hao

    2006-01-01

    A novel image hiding method based on the correlation analysis of bit plane is described in this paper. Firstly, based on the correlation analysis, different bit plane of a secret image is hided in different bit plane of several different open images. And then a new hiding image is acquired by a nesting "Exclusive-OR" operation on those images obtained from the first step. At last, by employing image fusion technique, the final hiding result is achieved. The experimental result shows that the method proposed in this paper is effective.

  13. A Novel Spectrum Handoff Method Based On Spectrum Reservation

    Directory of Open Access Journals (Sweden)

    Zheng Yong

    2013-07-01

    Full Text Available In this paper, we apply fuzzy analytic hierarchy process (FAHP method in the decision process of Cognitive Radio Networks (CRN spectrum handoff. Based on the pre-determined target spectrum list model, considering the multiple indicators which influence the handoff performance, we designed a spectrum handoff method based on spectrum reservation strategy. Simulation results show that the algorithm proposed in this paper exceeds the random handoff algorithm without channel order, it can significantly reduce the handoff frequency and time overhead of cognitive users, reduce the system delay and improve the system throughput.

  14. A Robust Digital Watermark Extracting Method Based on Neural Network

    Institute of Scientific and Technical Information of China (English)

    GUOLihua; YANGShutang; LIJianhua

    2003-01-01

    Since watermark removal software, such as StirMark, has succeeded in washing watermarks away for most of the known watermarking systems, it is necessary to improve the robustness of watermarking systems. A watermark extracting method based on the error Back propagation (BP) neural network is presented in this paper, which can efficiently improve the robustness of watermarking systems. Experiments show that even if the watermarking systems are attacked by the StirMark software, the extracting method based on neural network can still efficiently extract the whole watermark information.

  15. Method of infrared image enhancement based on histogram

    Institute of Scientific and Technical Information of China (English)

    WANG Liang; YAN Jie

    2011-01-01

    Aiming at the problem in infrared image enhancement, a new method is given based on histogram. Using the gray character- istics of target, the upper-bouod threshold is selected adaptively and the histogram is processed by the threshold. After choosing the gray transform function based on the gray level distribution of image, the gray transformation is done during histogram equalization. Finally, the enhanced image is obtained. Compared with histogram equalization (HE), histogram double equalization (HDE) and plateau histogram equalization (PE), the simulation results demonstrate that the image enhancement effect of this method has obvious superiority. At the same time, its operation speed is fast and real-time ability is excellent.

  16. Harbourscape Aalborg - Design Based Methods in Waterfront Development

    DEFF Research Database (Denmark)

    Kiib, Hans

    2012-01-01

    and Performative Architecture Workshop in 2008, and evaluates the method and the thinking behind this. The design workshops provide different design-based development methods which can be tested with the purpose of developing new concepts for the relationship between the city and its harbour, and in addition...... an independent contribution to the visioning process on urban development, city life planning and landscaping, but this has to be based on a “non-dogmatic” approach in the architectural and urban space design. This involves, among other aspects, the combination of independent evaluation and discourse analyses...

  17. Wavelet basis construction method based on separation blast vibration signal

    Institute of Scientific and Technical Information of China (English)

    凌同华; 张胜; 陈倩倩; 李洁

    2015-01-01

    As wavelet basis in wavelet analysis is neither arbitrary nor unique, the same signal dealing with different wavelet bases will generate different results. Therefore, how to construct a wavelet basis suitable for the characteristics of the analyzed signal and solve its algorithm and realization is a fundamental problem which perplexed many researchers. To solve these problems, in accordance with the basic features of the measured millisecond blast vibration signal, a new wavelet basis construction method based on the separation blast vibration signal is proposed, and the feasibility of this method is verified by comparing the practical effect of the newly constructed wavelet with other known wavelets in signal processing.

  18. IDEF method-based simulation model design and development framework

    Directory of Open Access Journals (Sweden)

    Ki-Young Jeong

    2009-09-01

    Full Text Available The purpose of this study is to provide an IDEF method-based integrated framework for a business process simulation model to reduce the model development time by increasing the communication and knowledge reusability during a simulation project. In this framework, simulation requirements are collected by a function modeling method (IDEF0 and a process modeling method (IDEF3. Based on these requirements, a common data model is constructed using the IDEF1X method. From this reusable data model, multiple simulation models are automatically generated using a database-driven simulation model development approach. The framework is claimed to help both requirement collection and experimentation phases during a simulation project by improving system knowledge, model reusability, and maintainability through the systematic use of three descriptive IDEF methods and the features of the relational database technologies. A complex semiconductor fabrication case study was used as a testbed to evaluate and illustrate the concepts and the framework. Two different simulation software products were used to develop and control the semiconductor model from the same knowledge base. The case study empirically showed that this framework could help improve the simulation project processes by using IDEF-based descriptive models and the relational database technology. Authors also concluded that this framework could be easily applied to other analytical model generation by separating the logic from the data.

  19. Hybrid Fundamental Solution Based Finite Element Method: Theory and Applications

    OpenAIRE

    Changyong Cao; Qing-Hua Qin

    2015-01-01

    An overview on the development of hybrid fundamental solution based finite element method (HFS-FEM) and its application in engineering problems is presented in this paper. The framework and formulations of HFS-FEM for potential problem, plane elasticity, three-dimensional elasticity, thermoelasticity, anisotropic elasticity, and plane piezoelectricity are presented. In this method, two independent assumed fields (intraelement filed and auxiliary frame field) are employed. The formulations for...

  20. A questionnaire based evaluation of teaching methods amongst MBBS students

    OpenAIRE

    Muneshwar JN, Mirza Shiraz Baig, Zingade US, Khan ST

    2013-01-01

    The medical education and health care in India are facing serious challenges in content and competencies. Heightened focus on the quality of teaching in medical college has led to increased use of student surveys as a means of evaluating teaching. Objectives: A questionnaire based evaluation of 200 students (I MBBS & II MBBS) about teaching methods was conducted at a Govt Medical College & Hospital, Aurangabad (MS) with intake capacity of 150 students &established since 50 last years. Methods...

  1. NUMERICAL METHODS FOR DIFFERENTIAL GAMES BASED ON PARTIAL DIFFERENTIAL EQUATIONS

    OpenAIRE

    Falcone, M

    2006-01-01

    In this paper we present some numerical methods for the solution of two-persons zero-sum deterministic differential games. The methods are based on the dynamic programming approach. We first solve the Isaacs equation associated to the game to get an approximate value function and then we use it to reconstruct approximate optimal feedback controls and optimal trajectories. The approximation schemes also have an interesting control interpretation since the time-discrete scheme stems from a dyna...

  2. Progress of DNA-based Methods for Species Identification

    Institute of Scientific and Technical Information of China (English)

    HU Zhen; ZHANG Su-hua; WANG Zheng; BIAN Ying-nan; LI Cheng-tao

    2015-01-01

    Species identification of biological samples is widely used in such fields as forensic science and food industry. A variety of accurate and reliable methods have been developed in recent years. The cur-rent reviewshows common target genes and screening criteria suitable for species identification, and de-scribed various DNA-based molecular biology methods about species identification. Additionally, it dis-cusses the future development of species identification combined with real-time PCR and sequencing technologies.

  3. New de-interlacing method based on adaptive weight

    Institute of Scientific and Technical Information of China (English)

    赵建伟; 古雪丰; 王朋; 刘重庆

    2004-01-01

    De-interlacing is very important when converting interlaced pictures to progressive pictures in format conversion.Multi-formats digital broadcast and progressive display requires the de-interlacing technique. An adaptive weight deinterlacing method is proposed. It combines motion compensation technique with directional-based spatio-temporal filter efficiently. Experiment results indicate that the method can keep edge continuity and sharpness effectively, reduce the artifacts in motion areas, and shows better visual performance when the estimated motion vectors are inaccurate.

  4. Gamification as an Intervention Method in Practice-Based Innovation

    OpenAIRE

    Mirva Hyypiä; Satu Parjanen

    2015-01-01

    This paper concentrates on the possibilities offered by gamification in practice-based innovation activities. It addresses the following research questions: How does gamification enhance creativity in practice-based innovation? How can gamification be modified into a method that facilitates experiences of gamefulness? A case study presented in the paper examines the impact of gamification in co-creating a value-adding network for open innovation processes between organizations. The results in...

  5. Model Based Bootstrap Methods for Interval Censored Data

    OpenAIRE

    Sen, Bodhisattva; Xu, Gongjun

    2013-01-01

    We investigate the performance of model based bootstrap methods for constructing point-wise confidence intervals around the survival function with interval censored data. We show that bootstrapping from the nonparametric maximum likelihood estimator of the survival function is inconsistent for both the current status and case 2 interval censoring models. A model based smoothed bootstrap procedure is proposed and shown to be consistent. In addition, simulation studies are conducted to illustra...

  6. Magnetic graphitic carbon nitride anion exchanger for specific enrichment of phosphopeptides.

    Science.gov (United States)

    Zhu, Gang-Tian; He, Xiao-Mei; Chen, Xi; Hussain, Dilshad; Ding, Jun; Feng, Yu-Qi

    2016-03-11

    Anion-exchange chromatography (AEX) is one of the chromatography-based methods effectively being used for phosphopeptide enrichment. However, the development of AEX materials with high specificity toward phosphopeptides is still less explored as compared to immobilized metal affinity chromatography (IMAC) or metal oxide affinity chromatography (MOAC). In this work, magnetic graphitic carbon nitride (MCN) was successfully prepared and introduced as a promising AEX candidate for phosphopeptide enrichment. Due to the extremely abundant content of nitrogen with basic functionality on the surface, this material kept excellent retention for phosphopeptides at pH as low as 1.8. Benefiting from the large binding capacity at such low pH, MCN showed remarkable specificity to capture phosphopeptides from tryptic digests of standard protein mixtures as well as nonfat milk and human serum. In addition, MCN was also applied to selective enrichment of phosphopeptides from the tryptic digests of rat brain lysate and 2576 unique phosphopeptides were successfully identified.

  7. Microbial diversity in an Armenian geothermal spring assessed by molecular and culture-based methods.

    Science.gov (United States)

    Panosyan, Hovik; Birkeland, Nils-Kåre

    2014-11-01

    The phylogenetic diversity of the prokaryotic community thriving in the Arzakan hot spring in Armenia was studied using molecular and culture-based methods. A sequence analysis of 16S rRNA gene clone libraries demonstrated the presence of a diversity of microorganisms belonging to the Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Epsilonproteobacteria, Firmicutes, Bacteroidetes phyla, and Cyanobacteria. Proteobacteria was the dominant group, representing 52% of the bacterial clones. Denaturing gradient gel electrophoresis profiles of the bacterial 16S rRNA gene fragments also indicated the abundance of Proteobacteria, Bacteroidetes, and Cyanobacteria populations. Most of the sequences were most closely related to uncultivated microorganisms and shared less than 96% similarity with their closest matches in GenBank, indicating that this spring harbors a unique community of novel microbial species or genera. The majority of the sequences of an archaeal 16S rRNA gene library, generated from a methanogenic enrichment, were close relatives of members of the genus Methanoculleus. Aerobic endospore-forming bacteria mainly belonging to Bacillus and Geobacillus were detected only by culture-dependent methods. Three isolates were successfully obtained having 99, 96, and 96% 16S rRNA gene sequence similarities to Arcobacter sp., Methylocaldum sp., and Methanoculleus sp., respectively. PMID:24740751

  8. Identification of potential drugs for Parkinson's disease based on a sub-pathway method.

    Science.gov (United States)

    Sun, Ai-Guo; Lin, Ai-Qi; Huang, Shao-Yue; Huo, Di; Cong, Chao-Hua

    2016-01-01

    Parkinson's disease (PD) is the second most prevalent neurodegenerative disease in ageing individuals. Current therapeutic regimen suffers from general side effects and a poor efficiency for PD symptoms. The need for development new therapeutic agents for PD is urgent. Here, we aimed to explore the metabolic mechanism of PD and identified potential novel agents for PD by a sub-pathway-based method. By using the GSE7621 microarray data from the GEO database, we first identified the 1226 differentially expressed genes (DEGs) between PD and normal samples. Then we identified 19 significant enriched metabolic sub-pathways, which may involve in development of PD. Finally, by an integrated analysis of PD-involved sub-pathways and drug-affected sub-pathways, we identified 49 novel small molecular drugs capable to target the PD-involved sub-pathways. Our method could not only identify existing drug (apomorphine) for PD, but also predict potentially novel agents (ketoconazole and astemizole), which might have therapeutic effects via targeting some key enzymes in arachidonic acid metabolism. These candidate agents identified by our approach may provide insights into a novel therapy approach for PD. PMID:25405535

  9. Investigating the distribution of some (but not all implicatures using corpora and web-based methods

    Directory of Open Access Journals (Sweden)

    Judith Degen

    2015-05-01

    Full Text Available A prevalent, but to date untested, assumption about lexicalized scalar implicatures such as those from some to not all, is that they fall into the class of GCIs and as such, constitute a homogeneous class of highly regularized and context-independent implicatures. This paper reports a test of this assumption in which linguistically untrained participants’ implicature strength judgments were collected for naturally occurring utterances containing the word some in a large-scale corpus-based web study. The results indicate that implicature strength is highly variable and systematically dependent on features of the linguistic context such as the partitive, determiner strength, and discourse accessibility. These results call into question the GCI status of scalar implicatures from some to not all and demonstrate the usefulness of corpora and web-based methods for challenging received wisdom, enriching the empirical landscape, and informing theory in pragmatics. http://dx.doi.org/10.3765/sp.8.11 BibTeX info

  10. 地应力地温场中煤层气富集区高精度定量预测的力学方法%High precision and quantitative prediction mechanics method of coalbed methane enrichment area in geo-stress and geothermal field

    Institute of Scientific and Technical Information of China (English)

    李志强; 鲜学福; 黄滚

    2012-01-01

    Aiming at the shortcomings of inaccurate predicting position, qualitative description and low precision about coalbed methane enrichment region predicting in China, this paper proposed quantitative prediction mechanics method of coalbed methane enrichment region, established prediction equations of gas pressure and coalbed methane (CBM) content influenced by stress and temperature. The equations reflects influence of ground stress and ground temperature on gas pressure, content of CBM and coal porosity. The stress and temperature affects gas pressure and changes gas adsorption content, affects gas pressure and coal porosity and changes gas free content. In addition, temperature affects adsorption parameter b and changes adsorption content. Took Libixia Yanjing mining area in Chongqing as an example , experiments of initial rock stress testing based on Kaiser AE method, methane adsorption testing at different temperatures, coal porosity testing at different depth,were carried out. Adsorption experiment indicates that adsorption parameter a is not obviously changed with temperature, b is linearly reduced with temperature increasing. Based on experiment and geological data, distribution of CBM content was predicted quantitatively. According to the dissimilarity of enrichment degree,the research area was divided into two-level enrichment region by CBM content as index. The prediction method overcomes the shortcomings of qualitative description, error prediction, low precision of CBM predicting.%针对当前我国煤层气富集区预测中预测位置不准、难以定量化描述、精度不高等不足,提出了地应力地温场中煤层气富集区定量预测的力学方法.建立了应力、温度影响下的煤层气压力预测方程、含气量预测方程,预测方程体现了地应力和地温对煤层气压力、含气量、孔隙率的影响,其中,应力和温度通过影响煤层气压力进而影响吸附量,通过影响煤层气压力和

  11. Anthropogenic impact on the sediment record from Lake Czechowskie (N-Poland) based on heavy metal contents in combination with high-resolution pollen and varve data: Geochemical background vs enrichment history and landsurface changes

    Science.gov (United States)

    Hoelzmann, Philipp; Słowiński, Michał; Obremska, Milena; Ott, Florian; Brauer, Achim

    2016-04-01

    For Czechowskie Lake, situated in a rural environment in N-Poland, we present a detailed heavy metal enrichment history for Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn for the last two hundred years at 1 cm intervals from an annually laminated sediment core and the near-by lake sediment record of Lake Głęboczek. To determine local geogenic background values for the lake different types of Holocene lake sediments (e.g. calcareous gyttja, organic gyttja etc.) were analyzed for their heavy metal concentrations. On the base of these results enrichment factors were calculated that represent the anthropogenic heavy metal deposition. This data is supplemented by on average five year resolution pollen record for the last 700 years. Based on vegetation changes (e.g. arboreal % such as Pinus and Carpinus betulus; Cerealia %; charcoal pieces), heavy metal input (mainly Pb, Zn and Cd), varve thickness, and precise varve dating (±3a years for the last 200a and ±8a years for the last 700a) five phases of significantly lower human activity interrupted by stronger human impact were distinguished. Strongest declines in anthropogenic pressure on the landscape are related to periods following war or economic regression and subsequent regeneration. Our results provide means to calculate and quantify with sub-decadal resolution anthropogenic impact as well as to define regional measures for a state of reference, reflecting natural conditions without human impact.

  12. A online credit evaluation method based on AHP and SPA

    Science.gov (United States)

    Xu, Yingtao; Zhang, Ying

    2009-07-01

    Online credit evaluation is the foundation for the establishment of trust and for the management of risk between buyers and sellers in e-commerce. In this paper, a new credit evaluation method based on the analytic hierarchy process (AHP) and the set pair analysis (SPA) is presented to determine the credibility of the electronic commerce participants. It solves some of the drawbacks found in classical credit evaluation methods and broadens the scope of current approaches. Both qualitative and quantitative indicators are considered in the proposed method, then a overall credit score is achieved from the optimal perspective. In the end, a case analysis of China Garment Network is provided for illustrative purposes.

  13. A GPS-Based Decentralized Control Method for Islanded Microgrids

    DEFF Research Database (Denmark)

    Golsorkhi, Mohammad; Lu, Dylan; Guerrero, Josep M.

    2016-01-01

    sharing of active (id) and reactive (iq) components of current are achieved based on vd-id and vq-iq droop characteristics. The method has been tested on laboratory scale MG. Experimental results demonstrate the efficacy of the proposed method in terms of dynamics, power quality and robustness with......Coordinated control of distributed energy resources (DER) is essential for the operation of islanded microgrids (MGs). Conventionally, such coordination is achieved by drooping the frequency of the reference voltage versus active (or reactive) power. The conventional droop method ensures...

  14. General transmission method based on PXI platform for physical experiments

    International Nuclear Information System (INIS)

    In this paper, a general method of data transmission system design on PXI platform is proposed. It can be used in readout system design for physical experiments. It aims at providing reusable and general interfaces for customized design of PXI while maintaining the transmission performance. It has three main features: (1) universal logic hardware interface, (2) ethernet based socket software interface, and (3) specific and simple data transmission protocol. Data transmission on PXI bus can be realized with the said two universal interfaces coordinated by this specific protocol. Test shows that this method is feasible and stable. This method can be easily reused in readout system designs for different experiments. (authors)

  15. Deformable target tracking method based on Lie algebra

    Science.gov (United States)

    Liu, Yunpeng; Shi, Zelin; Li, Guangwei

    2007-11-01

    Conventional approaches to object tracking use area correlation, but they are difficult to solve the problem of deformation of object region during tracking. A novel target tracking method based on Lie algebra is presented. We use Gabor feature as target token, model deformation using affine Lie group, and optimize parameters directly on manifold, which can be solved by exponential mapping between Lie Group and its Lie algebra. We analyze the essence of our method and test the algorithm using real image sequences. The experimental results demonstrate that Lie algebra method outperforms other traditional algorithms in efficiency, stabilization and accuracy.

  16. A Star Pattern Recognition Method Based on Decreasing Redundancy Matching

    Science.gov (United States)

    Yao, Lu; Xiao-xiang, Zhang; Rong-yu, Sun

    2016-04-01

    During the optical observation of space objects, it is difficult to enable the background stars to get matched when the telescope pointing error and tracking error are significant. Based on the idea of decreasing redundancy matching, an effective recognition method for background stars is proposed in this paper. The simulative images under different conditions and the observed images are used to verify the proposed method. The experimental results show that the proposed method has raised the rate of recognition and reduced the time consumption, it can be used to match star patterns accurately and rapidly.

  17. A Method of Attribute Reduction Based on Rough Set

    Institute of Scientific and Technical Information of China (English)

    LI Chang-biao; SONG Jian-ping

    2005-01-01

    The logging attribute optimization is an important task in the well-logging interpretation.A method of attribute reduction is presented based on rough set. Firstly, the core information of the sample by a general reductive method is determined. Then, the significance of dispensable attribute in the reduction-table is calculated. Finally, the minimum relative reduction set is achieved. The typical calculation and quantitative computation of reservoir parameter in oil logging show that the method of attribute reduction is greatly effective and feasible in logging interpretation.

  18. A Design Method of Business Application Framework Based on

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    This paper discusses design and implementation method of BusinessAppl ication Framework based on software patterns, and then presents MVC pattern of a rchitecture and the method of dynamical update promulgation for Business Applica tion Framework. We discuss adaptation of Abstract Factory for the kern el functionality of Business Application Framework, such as data creation, manip ulation, composition, etc. It also presents class model and its class st ructure of Abstract Factory pattern. Finally, we briefly discuss the update, mod ification, and reconstruction method of Business Application Framework.

  19. Optimal Route Selection Method Based on Vague Sets

    Institute of Scientific and Technical Information of China (English)

    GUO Rui; DU Li min; WANG Chun

    2015-01-01

    Optimal route selection is an important function of vehicle trac flow guidance system. Its core is to determine the index weight for measuring the route merits and to determine the evaluation method for selecting route. In this paper, subjective weighting method which relies on driver preference is used to determine the weight and the paper proposes the multi-criteria weighted decision method based on vague sets for selecting the optimal route. Examples show that, the usage of vague sets to describe route index value can provide more decision-making information for route selection.

  20. Comparative study, based on metamodels, of methods for controlling performance

    Directory of Open Access Journals (Sweden)

    Aitouche Samia

    2012-05-01

    Full Text Available The continuing evolution of technology and human behavior puts the company in an uncertain and evolving environment. The company must be responsive and even proactive; therefore, control performance becomes increasingly difficult. Choosing the best method of ensuring control by the management policy of the company and its strategy is also a decision problem. The aim of this paper is the comparative study of three methods: the Balanced Scorecard, GIMSI and SKANDIAs NAVIGATOR for choosing the best method for ensuring the orderly following the policy of the company while maintaining its durability. Our work is divided into three parts. We firstly proposed original structural and kinetic metamodels for the three methods that allow an overall view of a method. Secondly, based on the three metamodels, we have drawn a generic comparison to analyze completeness of the method. Thirdly, we performed a restrictive comparison based on a restrictive set of criteria related to the same aspect example organizational learning, which is one of the bricks of knowledge management for a reconciliation to a proactive organization in an environment disturbed and uncertain, and the urgent needs. We note that we applied the three methods are applied in our precedent works. [1][23