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Sample records for based b-spline nonrigid

  1. Segmented Regression Based on B-Splines with Solved Examples

    Directory of Open Access Journals (Sweden)

    Miloš Kaňka

    2015-12-01

    Full Text Available The subject of the paper is segmented linear, quadratic, and cubic regression based on B-spline basis functions. In this article we expose the formulas for the computation of B-splines of order one, two, and three that is needed to construct linear, quadratic, and cubic regression. We list some interesting properties of these functions. For a clearer understanding we give the solutions of a couple of elementary exercises regarding these functions.

  2. Wavelet based free-form deformations for nonrigid registration

    NARCIS (Netherlands)

    W. Sun (William); W.J. Niessen (Wiro); S. Klein (Stefan)

    2014-01-01

    textabstractIn nonrigid registration, deformations may take place on the coarse and fine scales. For the conventional B-splines based free-form deformation (FFD) registration, these coarse- and fine-scale deformations are all represented by basis functions of a single scale. Meanwhile, wavelets have

  3. A chord error conforming tool path B-spline fitting method for NC machining based on energy minimization and LSPIA

    OpenAIRE

    He, Shanshan; Ou, Daojiang; Yan, Changya; Lee, Chen-Han

    2015-01-01

    Piecewise linear (G01-based) tool paths generated by CAM systems lack G1 and G2 continuity. The discontinuity causes vibration and unnecessary hesitation during machining. To ensure efficient high-speed machining, a method to improve the continuity of the tool paths is required, such as B-spline fitting that approximates G01 paths with B-spline curves. Conventional B-spline fitting approaches cannot be directly used for tool path B-spline fitting, because they have shortages such as numerical...

  4. Decomposition of LiDAR waveforms by B-spline-based modeling

    Science.gov (United States)

    Shen, Xiang; Li, Qing-Quan; Wu, Guofeng; Zhu, Jiasong

    2017-06-01

    Waveform decomposition is a widely used technique for extracting echoes from full-waveform LiDAR data. Most previous studies recommended the Gaussian decomposition approach, which employs the Gaussian function in laser pulse modeling. As the Gaussian-shape assumption is not always satisfied for real LiDAR waveforms, some other probability distributions (e.g., the lognormal distribution, the generalized normal distribution, and the Burr distribution) have also been introduced by researchers to fit sharply-peaked and/or heavy-tailed pulses. However, these models cannot be universally used, because they are only suitable for processing the LiDAR waveforms in particular shapes. In this paper, we present a new waveform decomposition algorithm based on the B-spline modeling technique. LiDAR waveforms are not assumed to have a priori shapes but rather are modeled by B-splines, and the shape of a received waveform is treated as the mixture of finite transmitted pulses after translation and scaling transformation. The performance of the new model was tested using two full-waveform data sets acquired by a Riegl LMS-Q680i laser scanner and an Optech Aquarius laser bathymeter, comparing with three classical waveform decomposition approaches: the Gaussian, generalized normal, and lognormal distribution-based models. The experimental results show that the B-spline model performed the best in terms of waveform fitting accuracy, while the generalized normal model yielded the worst performance in the two test data sets. Riegl waveforms have nearly Gaussian pulse shapes and were well fitted by the Gaussian mixture model, while the B-spline-based modeling algorithm produced a slightly better result by further reducing 6.4% of fitting residuals, largely benefiting from alleviating the adverse impact of the ringing effect. The pulse shapes of Optech waveforms, on the other hand, are noticeably right-skewed. The Gaussian modeling results deviated significantly from original signals, and

  5. Nonrigid registration with free-form deformation model of multilevel uniform cubic B-splines: application to image registration and distortion correction of spectral image cubes.

    Science.gov (United States)

    Eckhard, Timo; Eckhard, Jia; Valero, Eva M; Nieves, Juan Luis

    2014-06-10

    In spectral imaging, spatial and spectral information of an image scene are combined. There exist several technologies that allow the acquisition of this kind of data. Depending on the optical components used in the spectral imaging systems, misalignment between image channels can occur. Further, the projection of some systems deviates from that of a perfect optical lens system enough that a distortion of scene content in the images becomes apparent to the observer. Correcting distortion and misalignment can be complicated for spectral image data if they are different at each image channel. In this work, we propose an image registration and distortion correction scheme for spectral image cubes that is based on a free-form deformation model of uniform cubic B-splines with multilevel grid refinement. This scheme is adaptive with respect to image size, degree of misalignment, and degree of distortion, and in that sense is superior to previous approaches. We support our proposed scheme with empirical data from a Bragg-grating-based hyperspectral imager, for which a registration accuracy of approximately one pixel was achieved.

  6. Graph analysis of non-uniform rational B-spline-based metamodels

    Science.gov (United States)

    Steuben, John C.; Turner, Cameron J.

    2015-09-01

    Over the past decade metamodels, also known as surrogate models, based on non-uniform rational B-splines (NURBs) have been developed. These metamodels exhibit unique properties that enable a wide range of computationally efficient analyses. Thus far, the analysis of these metamodels has been of a geometric nature, but in this article an approach based on graph theory is used. The properties of NURBs enable the interpretation of NURBs-based metamodels as graphs, and enable the demonstration of several analyses based on this structure. The general case of an analytically defined continuous-variable problem is given in the first example. A specific application in the field of robotic path planning constitutes the second example. Finally, an observation on the current state of this research, its merits and drawbacks, and an outline of future efforts that may increase its utility is provided.

  7. Regional Densification of a Global VTEC Model Based on B-Spline Representations

    Science.gov (United States)

    Erdogan, Eren; Schmidt, Michael; Dettmering, Denise; Goss, Andreas; Seitz, Florian; Börger, Klaus; Brandert, Sylvia; Görres, Barbara; Kersten, Wilhelm F.; Bothmer, Volker; Hinrichs, Johannes; Mrotzek, Niclas

    2017-04-01

    The project OPTIMAP is a joint initiative of the Bundeswehr GeoInformation Centre (BGIC), the German Space Situational Awareness Centre (GSSAC), the German Geodetic Research Institute of the Technical University Munich (DGFI-TUM) and the Institute for Astrophysics at the University of Göttingen (IAG). The main goal of the project is the development of an operational tool for ionospheric mapping and prediction (OPTIMAP). Two key features of the project are the combination of different satellite observation techniques (GNSS, satellite altimetry, radio occultations and DORIS) and the regional densification as a remedy against problems encountered with the inhomogeneous data distribution. Since the data from space-geoscientific mission which can be used for modeling ionospheric parameters, such as the Vertical Total Electron Content (VTEC) or the electron density, are distributed rather unevenly over the globe at different altitudes, appropriate modeling approaches have to be developed to handle this inhomogeneity. Our approach is based on a two-level strategy. To be more specific, in the first level we compute a global VTEC model with a moderate regional and spectral resolution which will be complemented in the second level by a regional model in a densification area. The latter is a region characterized by a dense data distribution to obtain a high spatial and spectral resolution VTEC product. Additionally, the global representation means a background model for the regional one to avoid edge effects at the boundaries of the densification area. The presented approach based on a global and a regional model part, i.e. the consideration of a regional densification is called the Two-Level VTEC Model (TLVM). The global VTEC model part is based on a series expansion in terms of polynomial B-Splines in latitude direction and trigonometric B-Splines in longitude direction. The additional regional model part is set up by a series expansion in terms of polynomial B-splines for

  8. Magnetotelluric (MT) data smoothing based on B-Spline algorithm and qualitative spectral analysis

    Science.gov (United States)

    Handyarso, Accep; Grandis, Hendra

    2017-07-01

    Data processing is one of the essential steps to obtain optimum response function of the Earth's subsurface. The MT Data processing is based on the Fast Fourier Transform (FFT) algorithm which converts the time series data into its frequency domain counterpart. The FFT combined with statistical algorithm constitute the Robust Processing algorithm which is widely implemented in MT data processing software. The Robust Processing has three variants, i.e. No Weight (NW), Rho Variance (RV), and Ordinary Coherency (OC). The RV and OC options allow for denoising the data but in many cases the Robust Processing still results in not so smooth sounding curve due to strong noise presence during measurement, such that the Crosspower (XPR) analysis must be conducted in the data processing. The XPR analysis is very time consuming step within the data processing. The collaboration of B-Spline algorithm and Qualitative Spectral Analysis in the frequency domain could be of advantages as an alternative for these steps. The technique is started by using the best coherency from the Robust Processing results. In the Qualitative Spectral Analysis one can determine which part of the data based on frequency that is more or less reliable, then the next process invokes B-Spline algorithm for data smoothing. This algorithm would select the best fit of the data trend in the frequency domain. The smooth apparent resistivity and phase sounding curves can be considered as more appropriate to represent the subsurface. This algorithm has been applied to the real MT data from several survey and give satisfactory results.

  9. A chord error conforming tool path B-spline fitting method for NC machining based on energy minimization and LSPIA

    Directory of Open Access Journals (Sweden)

    Shanshan He

    2015-10-01

    Full Text Available Piecewise linear (G01-based tool paths generated by CAM systems lack G1 and G2 continuity. The discontinuity causes vibration and unnecessary hesitation during machining. To ensure efficient high-speed machining, a method to improve the continuity of the tool paths is required, such as B-spline fitting that approximates G01 paths with B-spline curves. Conventional B-spline fitting approaches cannot be directly used for tool path B-spline fitting, because they have shortages such as numerical instability, lack of chord error constraint, and lack of assurance of a usable result. Progressive and Iterative Approximation for Least Squares (LSPIA is an efficient method for data fitting that solves the numerical instability problem. However, it does not consider chord errors and needs more work to ensure ironclad results for commercial applications. In this paper, we use LSPIA method incorporating Energy term (ELSPIA to avoid the numerical instability, and lower chord errors by using stretching energy term. We implement several algorithm improvements, including (1 an improved technique for initial control point determination over Dominant Point Method, (2 an algorithm that updates foot point parameters as needed, (3 analysis of the degrees of freedom of control points to insert new control points only when needed, (4 chord error refinement using a similar ELSPIA method with the above enhancements. The proposed approach can generate a shape-preserving B-spline curve. Experiments with data analysis and machining tests are presented for verification of quality and efficiency. Comparisons with other known solutions are included to evaluate the worthiness of the proposed solution.

  10. A meshless scheme for partial differential equations based on multiquadric trigonometric B-spline quasi-interpolation

    International Nuclear Information System (INIS)

    Gao Wen-Wu; Wang Zhi-Gang

    2014-01-01

    Based on the multiquadric trigonometric B-spline quasi-interpolant, this paper proposes a meshless scheme for some partial differential equations whose solutions are periodic with respect to the spatial variable. This scheme takes into account the periodicity of the analytic solution by using derivatives of a periodic quasi-interpolant (multiquadric trigonometric B-spline quasi-interpolant) to approximate the spatial derivatives of the equations. Thus, it overcomes the difficulties of the previous schemes based on quasi-interpolation (requiring some additional boundary conditions and yielding unwanted high-order discontinuous points at the boundaries in the spatial domain). Moreover, the scheme also overcomes the difficulty of the meshless collocation methods (i.e., yielding a notorious ill-conditioned linear system of equations for large collocation points). The numerical examples that are presented at the end of the paper show that the scheme provides excellent approximations to the analytic solutions. (general)

  11. A Novel Method for Gearbox Fault Detection Based on Biorthogonal B-spline Wavelet

    Directory of Open Access Journals (Sweden)

    Guangbin ZHANG

    2011-10-01

    Full Text Available Localized defects of gearbox tend to result in periodic impulses in the vibration signal, which contain important information for system dynamics analysis. So parameter identification of impulse provides an effective approach for gearbox fault diagnosis. Biorthogonal B-spline wavelet has the properties of compact support, high vanishing moment and symmetry, which are suitable to signal de-noising, fast calculation, and reconstruction. Thus, a novel time frequency distribution method is present for gear fault diagnosis by biorthogonal B-spline wavelet. Simulation study concerning singularity signal shows that this wavelet is effective in identifying the fault feature with coefficients map and coefficients line. Furthermore, an integrated approach consisting of wavelet decomposition, Hilbert transform and power spectrum density is used in applications. The results indicate that this method can extract the gearbox fault characteristics and diagnose the fault patterns effectively.

  12. Complex wavenumber Fourier analysis of the B-spline based finite element method

    Czech Academy of Sciences Publication Activity Database

    Kolman, Radek; Plešek, Jiří; Okrouhlík, Miloslav

    2014-01-01

    Roč. 51, č. 2 (2014), s. 348-359 ISSN 0165-2125 R&D Projects: GA ČR(CZ) GAP101/11/0288; GA ČR(CZ) GAP101/12/2315; GA ČR GPP101/10/P376; GA ČR GA101/09/1630 Institutional support: RVO:61388998 Keywords : elastic wave propagation * dispersion errors * B-spline * finite element method * isogeometric analysis Subject RIV: JR - Other Machinery Impact factor: 1.513, year: 2014 http://www.sciencedirect.com/science/article/pii/S0165212513001479

  13. B-spline based finite element method in one-dimensional discontinuous elastic wave propagation

    Czech Academy of Sciences Publication Activity Database

    Kolman, Radek; Okrouhlík, Miloslav; Berezovski, A.; Gabriel, Dušan; Kopačka, Ján; Plešek, Jiří

    2017-01-01

    Roč. 46, June (2017), s. 382-395 ISSN 0307-904X R&D Projects: GA ČR(CZ) GAP101/12/2315; GA MŠk(CZ) EF15_003/0000493 Grant - others:AV ČR(CZ) DAAD-16-12; AV ČR(CZ) ETA-15-03 Program:Bilaterální spolupráce; Bilaterální spolupráce Institutional support: RVO:61388998 Keywords : discontinuous elastic wave propagation * B-spline finite element method * isogeometric analysis * implicit and explicit time integration * dispersion * spurious oscillations Subject RIV: BI - Acoustics OBOR OECD: Acoustics Impact factor: 2.350, year: 2016 http://www.sciencedirect.com/science/article/pii/S0307904X17300835

  14. Quadrotor system identification using the multivariate multiplex b-spline

    NARCIS (Netherlands)

    Visser, T.; De Visser, C.C.; Van Kampen, E.J.

    2015-01-01

    A novel method for aircraft system identification is presented that is based on a new multivariate spline type; the multivariate multiplex B-spline. The multivariate multiplex B-spline is a generalization of the recently introduced tensor-simplex B-spline. Multivariate multiplex splines obtain

  15. Spatial and temporal interpolation of satellite-based aerosol optical depth measurements over North America using B-splines

    Science.gov (United States)

    Pfister, Nicolas; O'Neill, Norman T.; Aube, Martin; Nguyen, Minh-Nghia; Bechamp-Laganiere, Xavier; Besnier, Albert; Corriveau, Louis; Gasse, Geremie; Levert, Etienne; Plante, Danick

    2005-08-01

    Satellite-based measurements of aerosol optical depth (AOD) over land are obtained from an inversion procedure applied to dense dark vegetation pixels of remotely sensed images. The limited number of pixels over which the inversion procedure can be applied leaves many areas with little or no AOD data. Moreover, satellite coverage by sensors such as MODIS yields only daily images of a given region with four sequential overpasses required to straddle mid-latitude North America. Ground based AOD data from AERONET sun photometers are available on a more continuous basis but only at approximately fifty locations throughout North America. The object of this work is to produce a complete and coherent mapping of AOD over North America with a spatial resolution of 0.1 degree and a frequency of three hours by interpolating MODIS satellite-based data together with available AERONET ground based measurements. Before being interpolated, the MODIS AOD data extracted from different passes are synchronized to the mapping time using analyzed wind fields from the Global Multiscale Model (Meteorological Service of Canada). This approach amounts to a trajectory type of simplified atmospheric dynamics correction method. The spatial interpolation is performed using a weighted least squares method applied to bicubic B-spline functions defined on a rectangular grid. The least squares method enables one to weight the data accordingly to the measurement errors while the B-splines properties of local support and C2 continuity offer a good approximation of AOD behaviour viewed as a function of time and space.

  16. A B-spline image registration based CAD scheme to evaluate drug treatment response of ovarian cancer patients

    Science.gov (United States)

    Tan, Maxine; Li, Zheng; Moore, Kathleen; Thai, Theresa; Ding, Kai; Liu, Hong; Zheng, Bin

    2016-03-01

    Ovarian cancer is the second most common cancer amongst gynecologic malignancies, and has the highest death rate. Since the majority of ovarian cancer patients (>75%) are diagnosed in the advanced stage with tumor metastasis, chemotherapy is often required after surgery to remove the primary ovarian tumors. In order to quickly assess patient response to the chemotherapy in the clinical trials, two sets of CT examinations are taken pre- and post-therapy (e.g., after 6 weeks). Treatment efficacy is then evaluated based on Response Evaluation Criteria in Solid Tumors (RECIST) guideline, whereby tumor size is measured by the longest diameter on one CT image slice and only a subset of selected tumors are tracked. However, this criterion cannot fully represent the volumetric changes of the tumors and might miss potentially problematic unmarked tumors. Thus, we developed a new CAD approach to measure and analyze volumetric tumor growth/shrinkage using a cubic B-spline deformable image registration method. In this initial study, on 14 sets of pre- and post-treatment CT scans, we registered the two consecutive scans using cubic B-spline registration in a multiresolution (from coarse to fine) framework. We used Mattes mutual information metric as the similarity criterion and the L-BFGS-B optimizer. The results show that our method can quantify volumetric changes in the tumors more accurately than RECIST, and also detect (highlight) potentially problematic regions that were not originally targeted by radiologists. Despite the encouraging results of this preliminary study, further validation of scheme performance is required using large and diverse datasets in future.

  17. Non polynomial B-splines

    Science.gov (United States)

    Laksâ, Arne

    2015-11-01

    B-splines are the de facto industrial standard for surface modelling in Computer Aided design. It is comparable to bend flexible rods of wood or metal. A flexible rod minimize the energy when bending, a third degree polynomial spline curve minimize the second derivatives. B-spline is a nice way of representing polynomial splines, it connect polynomial splines to corner cutting techniques, which induces many nice and useful properties. However, the B-spline representation can be expanded to something we can call general B-splines, i.e. both polynomial and non-polynomial splines. We will show how this expansion can be done, and the properties it induces, and examples of non-polynomial B-spline.

  18. Representation of a human head with bi-cubic B-splines technique based on the laser scanning technique in 3D surface anthropometry.

    Science.gov (United States)

    Zhang, B; Molenbroek, J F M

    2004-09-01

    Three-dimensional (3D) anthropometry based on the laser scanning technique not only provides one-dimensional measurements calculated in accordance with the landmarks which are pre-located on the human body surface manually, but also the 3D shape information between the landmarks. This new technique used in recent ergonomic research has brought new challenges to resolving the application problem that was generally avoided by anthropometric experts in their researches. The current research problem is concentrating on how to shift and develop one-dimensional measurements (1D landmarks) into three-dimensional measurements (3D land-surfaces). The main purpose of this paper is to test whether the function of B-splines can be used to fit 3D scanned human heads, and to for further study to develop a computer aided ergonomic design tool (CAED). The result shows that B-splines surfaces can effectively reconstruct 3D human heads based on the laser scanning technique.

  19. Recursive B-spline approximation using the Kalman filter

    Directory of Open Access Journals (Sweden)

    Jens Jauch

    2017-02-01

    Full Text Available This paper proposes a novel recursive B-spline approximation (RBA algorithm which approximates an unbounded number of data points with a B-spline function and achieves lower computational effort compared with previous algorithms. Conventional recursive algorithms based on the Kalman filter (KF restrict the approximation to a bounded and predefined interval. Conversely RBA includes a novel shift operation that enables to shift estimated B-spline coefficients in the state vector of a KF. This allows to adapt the interval in which the B-spline function can approximate data points during run-time.

  20. An algorithm based on a new DQM with modified extended cubic B-splines for numerical study of two dimensional hyperbolic telegraph equation

    Directory of Open Access Journals (Sweden)

    Brajesh Kumar Singh

    2018-03-01

    Full Text Available In this paper, a new approach “modified extended cubic B-Spline differential quadrature (mECDQ method” has been developed for the numerical computation of two dimensional hyperbolic telegraph equation. The mECDQ method is a DQM based on modified extended cubic B-spline functions as new base functions. The mECDQ method reduces the hyperbolic telegraph equation into an amenable system of ordinary differential equations (ODEs, in time. The resulting system of ODEs has been solved by adopting an optimal five stage fourth-order strong stability preserving Runge - Kutta (SSP-RK54 scheme. The stability of the method is also studied by computing the eigenvalues of the coefficient matrices. It is shown that the mECDQ method produces stable solution for the telegraph equation. The accuracy of the method is illustrated by computing the errors between analytical solutions and numerical solutions are measured in terms of L2 and L∞ and average error norms for each problem. A comparison of mECDQ solutions with the results of the other numerical methods has been carried out for various space sizes and time step sizes, which shows that the mECDQ solutions are converging very fast in comparison with the various existing schemes. Keywords: Differential quadrature method, Hyperbolic telegraph equation, Modified extended cubic B-splines, mECDQ method, Thomas algorithm

  1. Iterative algorithm based on a combination of vector similarity measure and B-spline functions for particle analysis in forward scattering

    Science.gov (United States)

    Wang, Tian'en; Shen, Jianqi; Lin, Chengjun

    2017-06-01

    The vector similarity measure (VSM) was recently introduced into the inverse problem for particle analysis based on forward light scattering and its modified version was proposed to adapt for multi-modal particle systems. It is found that the algorithm is stable and efficient but the extracted solutions are usually oscillatory, especially for widely distributed particle systems. In order to improve this situation, an iterative VSM method combined with cubic B-spline functions (B-VSM) is presented. Simulations and experiments show that, compared with the old versions, this modification is more robust and efficient.

  2. A cubic B-spline-based hybrid registration of lung CT images for a dynamic airway geometric model with large deformation.

    Science.gov (United States)

    Yin, Youbing; Hoffman, Eric A; Ding, Kai; Reinhardt, Joseph M; Lin, Ching-Long

    2011-01-07

    The goal of this study is to develop a matching algorithm that can handle large geometric changes in x-ray computed tomography (CT)-derived lung geometry occurring during deep breath maneuvers. These geometric relationships are further utilized to build a dynamic lung airway model for computational fluid dynamics (CFD) studies of pulmonary air flow. The proposed algorithm is based on a cubic B-spline-based hybrid registration framework that incorporates anatomic landmark information with intensity patterns. A sequence of invertible B-splines is composed in a multiresolution framework to ensure local invertibility of the large deformation transformation and a physiologically meaningful similarity measure is adopted to compensate for changes in voxel intensity due to inflation. Registrations are performed using the proposed approach to match six pairs of 3D CT human lung datasets. Results show that the proposed approach has the ability to match the intensity pattern and the anatomical landmarks, and ensure local invertibility for large deformation transformations. Statistical results also show that the proposed hybrid approach yields significantly improved results as compared with approaches using either landmarks or intensity alone.

  3. Numerical Methods Using B-Splines

    Science.gov (United States)

    Shariff, Karim; Merriam, Marshal (Technical Monitor)

    1997-01-01

    The seminar will discuss (1) The current range of applications for which B-spline schemes may be appropriate (2) The property of high-resolution and the relationship between B-spline and compact schemes (3) Comparison between finite-element, Hermite finite element and B-spline schemes (4) Mesh embedding using B-splines (5) A method for the incompressible Navier-Stokes equations in curvilinear coordinates using divergence-free expansions.

  4. Gradient-based optimization with B-splines on sparse grids for solving forward-dynamics simulations of three-dimensional, continuum-mechanical musculoskeletal system models.

    Science.gov (United States)

    Valentin, J; Sprenger, M; Pflüger, D; Röhrle, O

    2018-02-10

    Investigating the interplay between muscular activity and motion is the basis to improve our understanding of healthy or diseased musculoskeletal systems. To be able to analyze the musculoskeletal systems, computational models are employed. Albeit some severe modeling assumptions, almost all existing musculoskeletal system simulations appeal to multi-body simulation frameworks. Although continuum-mechanical musculoskeletal system models can compensate for some of these limitations, they are essentially not considered due to their computational complexity and cost. The proposed framework is the first activation-driven musculoskeletal system model, in which the exerted skeletal muscle forces are computed using three-dimensional, continuum-mechanical skeletal muscle models and in which muscle activations are determined based on a constraint optimization problem. Numerical feasibility is achieved by computing sparse grid surrogates with hierarchical B-splines, and adaptive sparse grid refinement further reduces the computational effort. The choice of B-splines allows the use of all existing gradient-based optimization techniques without further numerical approximation. This paper demonstrates that the resulting surrogates have low relative errors (less than 0.76%) and can be used within forward simulations that are subject to constraint optimization. To demonstrate this, we set up several different test scenarios in which an upper limb model consisting of the elbow joint, the biceps and triceps brachii and an external load is subjected to different optimization criteria. Even though this novel method has only been demonstrated for a two-muscle system, it can easily be extended to musculoskeletal systems with three or more muscles. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  5. Color management with a hammer: the B-spline fitter

    Science.gov (United States)

    Bell, Ian E.; Liu, Bonny H. P.

    2003-01-01

    To paraphrase Abraham Maslow: If the only tool you have is a hammer, every problem looks like a nail. We have a B-spline fitter customized for 3D color data, and many problems in color management can be solved with this tool. Whereas color devices were once modeled with extensive measurement, look-up tables and trilinear interpolation, recent improvements in hardware have made B-spline models an affordable alternative. Such device characterizations require fewer color measurements than piecewise linear models, and have uses beyond simple interpolation. A B-spline fitter, for example, can act as a filter to remove noise from measurements, leaving a model with guaranteed smoothness. Inversion of the device model can then be carried out consistently and efficiently, as the spline model is well behaved and its derivatives easily computed. Spline-based algorithms also exist for gamut mapping, the composition of maps, and the extrapolation of a gamut. Trilinear interpolation---a degree-one spline---can still be used after nonlinear spline smoothing for high-speed evaluation with robust convergence. Using data from several color devices, this paper examines the use of B-splines as a generic tool for modeling devices and mapping one gamut to another, and concludes with applications to high-dimensional and spectral data.

  6. B-LUT: Fast and low memory B-spline image interpolation.

    Science.gov (United States)

    Sarrut, David; Vandemeulebroucke, Jef

    2010-08-01

    We propose a fast alternative to B-splines in image processing based on an approximate calculation using precomputed B-spline weights. During B-spline indirect transformation, these weights are efficiently retrieved in a nearest-neighbor fashion from a look-up table, greatly reducing overall computation time. Depending on the application, calculating a B-spline using a look-up table, called B-LUT, will result in an exact or approximate B-spline calculation. In case of the latter the obtained accuracy can be controlled by the user. The method is applicable to a wide range of B-spline applications and has very low memory requirements compared to other proposed accelerations. The performance of the proposed B-LUTs was compared to conventional B-splines as implemented in the popular ITK toolkit for the general case of image intensity interpolation. Experiments illustrated that highly accurate B-spline approximation can be obtained all while computation time is reduced with a factor of 5-6. The B-LUT source code, compatible with the ITK toolkit, has been made freely available to the community. 2009 Elsevier Ireland Ltd. All rights reserved.

  7. Data reduction using cubic rational B-splines

    Science.gov (United States)

    Chou, Jin J.; Piegl, Les A.

    1992-01-01

    A geometric method is proposed for fitting rational cubic B-spline curves to data that represent smooth curves including intersection or silhouette lines. The algorithm is based on the convex hull and the variation diminishing properties of Bezier/B-spline curves. The algorithm has the following structure: it tries to fit one Bezier segment to the entire data set and if it is impossible it subdivides the data set and reconsiders the subset. After accepting the subset the algorithm tries to find the longest run of points within a tolerance and then approximates this set with a Bezier cubic segment. The algorithm uses this procedure repeatedly to the rest of the data points until all points are fitted. It is concluded that the algorithm delivers fitting curves which approximate the data with high accuracy even in cases with large tolerances.

  8. Numerical treatment of Hunter Saxton equation using cubic trigonometric B-spline collocation method

    Science.gov (United States)

    Hashmi, M. S.; Awais, Muhammad; Waheed, Ammarah; Ali, Qutab

    2017-09-01

    In this article, authors proposed a computational model based on cubic trigonometric B-spline collocation method to solve Hunter Saxton equation. The nonlinear second order partial differential equation arises in modeling of nematic liquid crystals and describes some aspects of orientation wave. The problem is decomposed into system of linear equations using cubic trigonometric B-spline collocation method with quasilinearization. To show the efficiency of the proposed method, two numerical examples have been tested for different values of t. The results are described using error tables and graphs and compared with the results existed in literature. It is evident that results are in good agreement with analytical solution and better than Arbabi, Nazari, and Davishi, Optik 127, 5255-5258 (2016). In current problem, it is also observed that the cubic trigonometric B-spline gives better results as compared to cubic B-spline.

  9. Rolled fingerprint construction using MRF-based nonrigid image registration.

    Science.gov (United States)

    Kwon, Dongjin; Yun, Il Dong; Lee, Sang Uk

    2010-12-01

    This paper proposes a new rolled fingerprint construction approach incorporating a state-of-the-art nonrigid image registration method based upon a Markov random field (MRF) energy model. The proposed method finds dense correspondences between images from a rolled fingerprint sequence and warps the entire fingerprint area to synthesize a rolled fingerprint. This method can generate conceptually more accurate rolled fingerprints by preserving the geometric properties of the finger surface as opposed to ink-based rolled impressions and other existing rolled fingerprint construction methods. To verify the accuracy of the proposed method, various comparative experiments were designed to reveal differences among the rolled construction methods. The results show that the proposed method is significantly superior in various aspects compared to previous approaches.

  10. Spatial Variation of Seismic B-Values of the Empirical Law of the Magnitude-Frequency Distribution from a Bayesian Approach Based On Spline (B-Spline) Function in the North Anatolian Fault Zone, North of Turkey

    Science.gov (United States)

    Türker, Tugba; Bayrak, Yusuf

    2017-12-01

    In this study, A Bayesian approach based on Spline (B-spline) function is used to estimate the spatial variations of the seismic b-values of the empirical law (G-R law) in the North Anatolian Fault Zone (NAFZ), North of Turkey. B-spline function method developed for estimation and interpolation of b-values. Spatial variations in b-values are known to reflect the stress field and can be used in earthquake hazard analysis. We proposed that b-values combined with seismicity and tectonic background. β=b*ln(10) function (the derivation of the G-R law) based on a Bayesian approach is used to estimate the b values and their standard deviations. A homogeneous instrumental catalog is used during the period 1900-2017. We divided into ten different seismic source regions based on epicenter distribution, tectonic, seismicity, faults in NAFZ. Three historical earthquakes (1343, MS = 7. 5, 1766, Ms=7.3, 1894, MS = 7. 0) are included in region 2 (Marmara Sea (Tekirdağ-Merkez-Kumburgaz-Çmarcik Basins)) where a large earthquake is expected in the near future because of a large earthquake hasn’t been observed for the instrumental period. The spatial variations in ten different seismogenic regions are estimated in NAFZ. In accordance with estimates, b-values are changed between 0.52±0.07 and 0.86±0.13. The high b values are estimated the Southern Branch of NAFZ (Edremit Fault Zones, Yenice-Gönen, Mustafa Kemal Paşa, Ulubat Faults) region, so it is related low stress. The low b values are estimated between Tokat-Erzincan region, so it is related high stress. The maps of 2D and 3D spatial variations (2D contour maps, classed post maps (a group the data into discrete classes), image maps (raster maps based on grid files), 3D wireframe (three-dimensional representations of grid files) and 3D surface) are plotted to the b-values. The spatial variations b-values can be used earthquake hazard analysis for NAFZ.

  11. Solving Buckmaster equation using cubic B-spline and cubic trigonometric B-spline collocation methods

    Science.gov (United States)

    Chanthrasuwan, Maveeka; Asri, Nur Asreenawaty Mohd; Hamid, Nur Nadiah Abd; Majid, Ahmad Abd.; Azmi, Amirah

    2017-08-01

    The cubic B-spline and cubic trigonometric B-spline functions are used to set up the collocation in finding solutions for the Buckmaster equation. These splines are applied as interpolating functions in the spatial dimension while the finite difference method (FDM) is used to discretize the time derivative. The Buckmaster equation is linearized using Taylor's expansion and solved using two schemes, namely Crank-Nicolson and fully implicit. The von Neumann stability analysis is carried out on the two schemes and they are shown to be conditionally stable. In order to demonstrate the capability of the schemes, some problems are solved and compared with analytical and FDM solutions. The proposed methods are found to generate more accurate results than the FDM.

  12. Solving Dym equation using quartic B-spline and quartic trigonometric B-spline collocation methods

    Science.gov (United States)

    Anuar, Hanis Safirah Saiful; Mafazi, Nur Hidayah; Hamid, Nur Nadiah Abd; Majid, Ahmad Abd.; Azmi, Amirah

    2017-08-01

    The nonlinear Dym equation is solved numerically using the quartic B-spline (QuBS) and quartic trigonometric B-spline (QuTBS) collocation methods. The QuBS and QuTBS are utilized as interpolating functions in the spatial dimension while the finite difference method (FDM) is applied to discretize the temporal space with the help of theta-weighted method. The nonlinear term in the Dym equation is linearized using Taylor's expansion. Two schemes are performed on both methods which are Crank-Nicolson and fully implicit. Applying the Von-Neumann stability analysis, these schemes are found to be conditionally stable. Several numerical examples of different forms are discussed and compared in term of errors with exact solutions and results from the FDM.

  13. B-spline design of digital FIR filter using evolutionary computation techniques

    Science.gov (United States)

    Swain, Manorama; Panda, Rutuparna

    2011-10-01

    In the forth coming era, digital filters are becoming a true replacement for the analog filter designs. Here in this paper we examine a design method for FIR filter using global search optimization techniques known as Evolutionary computation via genetic algorithm and bacterial foraging, where the filter design considered as an optimization problem. In this paper, an effort is made to design the maximally flat filters using generalized B-spline window. The key to our success is the fact that the bandwidth of the filer response can be modified by changing tuning parameters incorporated well within the B-spline function. This is an optimization problem. Direct approach has been deployed to design B-spline window based FIR digital filters. Four parameters (order, width, length and tuning parameter) have been optimized by using GA and EBFS. It is observed that the desired response can be obtained with lower order FIR filters with optimal width and tuning parameters.

  14. Image edges detection through B-Spline filters

    International Nuclear Information System (INIS)

    Mastropiero, D.G.

    1997-01-01

    B-Spline signal processing was used to detect the edges of a digital image. This technique is based upon processing the image in the Spline transform domain, instead of doing so in the space domain (classical processing). The transformation to the Spline transform domain means finding out the real coefficients that makes it possible to interpolate the grey levels of the original image, with a B-Spline polynomial. There exist basically two methods of carrying out this interpolation, which produces the existence of two different Spline transforms: an exact interpolation of the grey values (direct Spline transform), and an approximated interpolation (smoothing Spline transform). The latter results in a higher smoothness of the gray distribution function defined by the Spline transform coefficients, and is carried out with the aim of obtaining an edge detection algorithm which higher immunity to noise. Finally the transformed image was processed in order to detect the edges of the original image (the gradient method was used), and the results of the three methods (classical, direct Spline transform and smoothing Spline transform) were compared. The results were that, as expected, the smoothing Spline transform technique produced a detection algorithm more immune to external noise. On the other hand the direct Spline transform technique, emphasizes more the edges, even more than the classical method. As far as the consuming time is concerned, the classical method is clearly the fastest one, and may be applied whenever the presence of noise is not important, and whenever edges with high detail are not required in the final image. (author). 9 refs., 17 figs., 1 tab

  15. Improving Feature-based Non-rigid Registration for Applications in Radiotherapy

    NARCIS (Netherlands)

    E.M. Vásquez Osorio (Eliana)

    2012-01-01

    textabstractThis thesis describes the improvements of a feature-based non-rigid registration method that were essential for its application in radiotherapy. In addition, this thesis presents three practical applications of the improved method: 1) quantification of anatomical changes in 3D for head

  16. Micropolar Fluids Using B-spline Divergence Conforming Spaces

    KAUST Repository

    Sarmiento, Adel

    2014-06-06

    We discretized the two-dimensional linear momentum, microrotation, energy and mass conservation equations from micropolar fluids theory, with the finite element method, creating divergence conforming spaces based on B-spline basis functions to obtain pointwise divergence free solutions [8]. Weak boundary conditions were imposed using Nitsche\\'s method for tangential conditions, while normal conditions were imposed strongly. Once the exact mass conservation was provided by the divergence free formulation, we focused on evaluating the differences between micropolar fluids and conventional fluids, to show the advantages of using the micropolar fluid model to capture the features of complex fluids. A square and an arc heat driven cavities were solved as test cases. A variation of the parameters of the model, along with the variation of Rayleigh number were performed for a better understanding of the system. The divergence free formulation was used to guarantee an accurate solution of the flow. This formulation was implemented using the framework PetIGA as a basis, using its parallel stuctures to achieve high scalability. The results of the square heat driven cavity test case are in good agreement with those reported earlier.

  17. A Galerkin Solution for Burgers' Equation Using Cubic B-Spline Finite Elements

    OpenAIRE

    Soliman, A. A.

    2012-01-01

    Numerical solutions for Burgers’ equation based on the Galerkins’ method using cubic B-splines as both weight and interpolation functions are set up. It is shown that this method is capable of solving Burgers’ equation accurately for values of viscosity ranging from very small to large. Three standard problems are used to validate the proposed algorithm. A linear stability analysis shows that a numerical scheme based on a Cranck-Nicolson approximation in time is unconditionally stable.

  18. A Galerkin Solution for Burgers' Equation Using Cubic B-Spline Finite Elements

    Directory of Open Access Journals (Sweden)

    A. A. Soliman

    2012-01-01

    Full Text Available Numerical solutions for Burgers’ equation based on the Galerkins’ method using cubic B-splines as both weight and interpolation functions are set up. It is shown that this method is capable of solving Burgers’ equation accurately for values of viscosity ranging from very small to large. Three standard problems are used to validate the proposed algorithm. A linear stability analysis shows that a numerical scheme based on a Cranck-Nicolson approximation in time is unconditionally stable.

  19. Counterexamples to the B-spline Conjecture for Gabor Frames

    DEFF Research Database (Denmark)

    Lemvig, Jakob; Nielsen, Kamilla Haahr

    2016-01-01

    The frame set conjecture for B-splines Bn, n≥2, states that the frame set is the maximal set that avoids the known obstructions. We show that any hyperbola of the form ab=r, where r is a rational number smaller than one and a and b denote the sampling and modulation rates, respectively, has infin...

  20. Numerical simulation of reaction-diffusion systems by modified cubic B-spline differential quadrature method

    International Nuclear Information System (INIS)

    Mittal, R.C.; Rohila, Rajni

    2016-01-01

    In this paper, we have applied modified cubic B-spline based differential quadrature method to get numerical solutions of one dimensional reaction-diffusion systems such as linear reaction-diffusion system, Brusselator system, Isothermal system and Gray-Scott system. The models represented by these systems have important applications in different areas of science and engineering. The most striking and interesting part of the work is the solution patterns obtained for Gray Scott model, reminiscent of which are often seen in nature. We have used cubic B-spline functions for space discretization to get a system of ordinary differential equations. This system of ODE’s is solved by highly stable SSP-RK43 method to get solution at the knots. The computed results are very accurate and shown to be better than those available in the literature. Method is easy and simple to apply and gives solutions with less computational efforts.

  1. A Comparison of FFD-based Nonrigid Registration and AAMs Applied to Myocardial Perfusion MRI

    DEFF Research Database (Denmark)

    Ólafsdóttir, Hildur; Stegmann, Mikkel Bille; Ersbøll, Bjarne Kjær

    2006-01-01

    -form deformations (FFDs). AAMs are known to be much faster than nonrigid registration algorithms. On the other hand nonrigid registration algorithms are independent of a training set as required to build an AAM. To obtain a further comparison of the two methods, they are both applied to automatically register multi......-slice myocardial perfusion images. The images are acquired by magnetic resonance imaging, from infarct patients. A registration of these sequences is crucial for clinical practice, which currently is subjected to manual labor. In the paper, the pros and cons of the two registration approaches are discussed...... and qualitative and quantitative comparisons are provided. The quantitative comparison is obtained by an analysis of variance of landmark errors, i.e. point to point and point to curve errors. Even though the FFD-based approach does not include a training phase it gave similar accuracy as the AAMs in terms...

  2. Direct Numerical Simulation of Incompressible Pipe Flow Using a B-Spline Spectral Method

    Science.gov (United States)

    Loulou, Patrick; Moser, Robert D.; Mansour, Nagi N.; Cantwell, Brian J.

    1997-01-01

    A numerical method based on b-spline polynomials was developed to study incompressible flows in cylindrical geometries. A b-spline method has the advantages of possessing spectral accuracy and the flexibility of standard finite element methods. Using this method it was possible to ensure regularity of the solution near the origin, i.e. smoothness and boundedness. Because b-splines have compact support, it is also possible to remove b-splines near the center to alleviate the constraint placed on the time step by an overly fine grid. Using the natural periodicity in the azimuthal direction and approximating the streamwise direction as periodic, so-called time evolving flow, greatly reduced the cost and complexity of the computations. A direct numerical simulation of pipe flow was carried out using the method described above at a Reynolds number of 5600 based on diameter and bulk velocity. General knowledge of pipe flow and the availability of experimental measurements make pipe flow the ideal test case with which to validate the numerical method. Results indicated that high flatness levels of the radial component of velocity in the near wall region are physical; regions of high radial velocity were detected and appear to be related to high speed streaks in the boundary layer. Budgets of Reynolds stress transport equations showed close similarity with those of channel flow. However contrary to channel flow, the log layer of pipe flow is not homogeneous for the present Reynolds number. A topological method based on a classification of the invariants of the velocity gradient tensor was used. Plotting iso-surfaces of the discriminant of the invariants proved to be a good method for identifying vortical eddies in the flow field.

  3. Nonlinear registration using B-spline feature approximation and image similarity

    Science.gov (United States)

    Kim, June-Sic; Kim, Jae Seok; Kim, In Young; Kim, Sun Il

    2001-07-01

    The warping methods are broadly classified into the image-matching method based on similar pixel intensity distribution and the feature-matching method using distinct anatomical feature. Feature based methods may fail to match local variation of two images. However, the method globally matches features well. False matches corresponding to local minima of the underlying energy functions can be obtained through the similarity based methods. To avoid local minima problem, we proposes non-linear deformable registration method utilizing global information of feature matching and the local information of image matching. To define the feature, gray matter and white matter of brain tissue are segmented by Fuzzy C-Mean (FCM) algorithm. B-spline approximation technique is used for feature matching. We use a multi-resolution B-spline approximation method which modifies multilevel B-spline interpolation method. It locally changes the resolution of the control lattice in proportion to the distance between features of two images. Mutual information is used for similarity measure. The deformation fields are locally refined until maximize the similarity. In two 3D T1 weighted MRI test, this method maintained the accuracy by conventional image matching methods without the local minimum problem.

  4. Hybrid B-Spline Collocation Method for Solving the Generalized Burgers-Fisher and Burgers-Huxley Equations

    Directory of Open Access Journals (Sweden)

    Imtiaz Wasim

    2018-01-01

    Full Text Available In this study, we introduce a new numerical technique for solving nonlinear generalized Burgers-Fisher and Burgers-Huxley equations using hybrid B-spline collocation method. This technique is based on usual finite difference scheme and Crank-Nicolson method which are used to discretize the time derivative and spatial derivatives, respectively. Furthermore, hybrid B-spline function is utilized as interpolating functions in spatial dimension. The scheme is verified unconditionally stable using the Von Neumann (Fourier method. Several test problems are considered to check the accuracy of the proposed scheme. The numerical results are in good agreement with known exact solutions and the existing schemes in literature.

  5. Solving nonlinear Benjamin-Bona-Mahony equation using cubic B-spline and cubic trigonometric B-spline collocation methods

    Science.gov (United States)

    Rahan, Nur Nadiah Mohd; Ishak, Siti Noor Shahira; Hamid, Nur Nadiah Abd; Majid, Ahmad Abd.; Azmi, Amirah

    2017-04-01

    In this research, the nonlinear Benjamin-Bona-Mahony (BBM) equation is solved numerically using the cubic B-spline (CuBS) and cubic trigonometric B-spline (CuTBS) collocation methods. The CuBS and CuTBS are utilized as interpolating functions in the spatial dimension while the standard finite difference method (FDM) is applied to discretize the temporal space. In order to solve the nonlinear problem, the BBM equation is linearized using Taylor's expansion. Applying the von-Neumann stability analysis, the proposed techniques are shown to be unconditionally stable under the Crank-Nicolson scheme. Several numerical examples are discussed and compared with exact solutions and results from the FDM.

  6. Achieving high data reduction with integral cubic B-splines

    Science.gov (United States)

    Chou, Jin J.

    1993-01-01

    During geometry processing, tangent directions at the data points are frequently readily available from the computation process that generates the points. It is desirable to utilize this information to improve the accuracy of curve fitting and to improve data reduction. This paper presents a curve fitting method which utilizes both position and tangent direction data. This method produces G(exp 1) non-rational B-spline curves. From the examples, the method demonstrates very good data reduction rates while maintaining high accuracy in both position and tangent direction.

  7. Data assimilation using Bayesian filters and B-spline geological models

    KAUST Repository

    Duan, Lian

    2011-04-01

    This paper proposes a new approach to problems of data assimilation, also known as history matching, of oilfield production data by adjustment of the location and sharpness of patterns of geological facies. Traditionally, this problem has been addressed using gradient based approaches with a level set parameterization of the geology. Gradient-based methods are robust, but computationally demanding with real-world reservoir problems and insufficient for reservoir management uncertainty assessment. Recently, the ensemble filter approach has been used to tackle this problem because of its high efficiency from the standpoint of implementation, computational cost, and performance. Incorporation of level set parameterization in this approach could further deal with the lack of differentiability with respect to facies type, but its practical implementation is based on some assumptions that are not easily satisfied in real problems. In this work, we propose to describe the geometry of the permeability field using B-spline curves. This transforms history matching of the discrete facies type to the estimation of continuous B-spline control points. As filtering scheme, we use the ensemble square-root filter (EnSRF). The efficacy of the EnSRF with the B-spline parameterization is investigated through three numerical experiments, in which the reservoir contains a curved channel, a disconnected channel or a 2-dimensional closed feature. It is found that the application of the proposed method to the problem of adjusting facies edges to match production data is relatively straightforward and provides statistical estimates of the distribution of geological facies and of the state of the reservoir.

  8. On developing B-spline registration algorithms for multi-core processors.

    Science.gov (United States)

    Shackleford, J A; Kandasamy, N; Sharp, G C

    2010-11-07

    Spline-based deformable registration methods are quite popular within the medical-imaging community due to their flexibility and robustness. However, they require a large amount of computing time to obtain adequate results. This paper makes two contributions towards accelerating B-spline-based registration. First, we propose a grid-alignment scheme and associated data structures that greatly reduce the complexity of the registration algorithm. Based on this grid-alignment scheme, we then develop highly data parallel designs for B-spline registration within the stream-processing model, suitable for implementation on multi-core processors such as graphics processing units (GPUs). Particular attention is focused on an optimal method for performing analytic gradient computations in a data parallel fashion. CPU and GPU versions are validated for execution time and registration quality. Performance results on large images show that our GPU algorithm achieves a speedup of 15 times over the single-threaded CPU implementation whereas our multi-core CPU algorithm achieves a speedup of 8 times over the single-threaded implementation. The CPU and GPU versions achieve near-identical registration quality in terms of RMS differences between the generated vector fields.

  9. On developing B-spline registration algorithms for multi-core processors

    International Nuclear Information System (INIS)

    Shackleford, J A; Kandasamy, N; Sharp, G C

    2010-01-01

    Spline-based deformable registration methods are quite popular within the medical-imaging community due to their flexibility and robustness. However, they require a large amount of computing time to obtain adequate results. This paper makes two contributions towards accelerating B-spline-based registration. First, we propose a grid-alignment scheme and associated data structures that greatly reduce the complexity of the registration algorithm. Based on this grid-alignment scheme, we then develop highly data parallel designs for B-spline registration within the stream-processing model, suitable for implementation on multi-core processors such as graphics processing units (GPUs). Particular attention is focused on an optimal method for performing analytic gradient computations in a data parallel fashion. CPU and GPU versions are validated for execution time and registration quality. Performance results on large images show that our GPU algorithm achieves a speedup of 15 times over the single-threaded CPU implementation whereas our multi-core CPU algorithm achieves a speedup of 8 times over the single-threaded implementation. The CPU and GPU versions achieve near-identical registration quality in terms of RMS differences between the generated vector fields.

  10. Non-stationary hydrologic frequency analysis using B-spline quantile regression

    Science.gov (United States)

    Nasri, B.; Bouezmarni, T.; St-Hilaire, A.; Ouarda, T. B. M. J.

    2017-11-01

    Hydrologic frequency analysis is commonly used by engineers and hydrologists to provide the basic information on planning, design and management of hydraulic and water resources systems under the assumption of stationarity. However, with increasing evidence of climate change, it is possible that the assumption of stationarity, which is prerequisite for traditional frequency analysis and hence, the results of conventional analysis would become questionable. In this study, we consider a framework for frequency analysis of extremes based on B-Spline quantile regression which allows to model data in the presence of non-stationarity and/or dependence on covariates with linear and non-linear dependence. A Markov Chain Monte Carlo (MCMC) algorithm was used to estimate quantiles and their posterior distributions. A coefficient of determination and Bayesian information criterion (BIC) for quantile regression are used in order to select the best model, i.e. for each quantile, we choose the degree and number of knots of the adequate B-spline quantile regression model. The method is applied to annual maximum and minimum streamflow records in Ontario, Canada. Climate indices are considered to describe the non-stationarity in the variable of interest and to estimate the quantiles in this case. The results show large differences between the non-stationary quantiles and their stationary equivalents for an annual maximum and minimum discharge with high annual non-exceedance probabilities.

  11. A spectral/B-spline method for the Navier-Stokes equations in unbounded domains

    International Nuclear Information System (INIS)

    Dufresne, L.; Dumas, G.

    2003-01-01

    The numerical method presented in this paper aims at solving the incompressible Navier-Stokes equations in unbounded domains. The problem is formulated in cylindrical coordinates and the method is based on a Galerkin approximation scheme that makes use of vector expansions that exactly satisfy the continuity constraint. More specifically, the divergence-free basis vector functions are constructed with Fourier expansions in the θ and z directions while mapped B-splines are used in the semi-infinite radial direction. Special care has been taken to account for the particular analytical behaviors at both end points r=0 and r→∞. A modal reduction algorithm has also been implemented in the azimuthal direction, allowing for a relaxation of the CFL constraint on the timestep size and a possibly significant reduction of the number of DOF. The time marching is carried out using a mixed quasi-third order scheme. Besides the advantages of a divergence-free formulation and a quasi-spectral convergence, the local character of the B-splines allows for a great flexibility in node positioning while keeping narrow bandwidth matrices. Numerical tests show that the present method compares advantageously with other similar methodologies using purely global expansions

  12. ESTIMATION OF GENETIC PARAMETERS IN TROPICARNE CATTLE WITH RANDOM REGRESSION MODELS USING B-SPLINES

    Directory of Open Access Journals (Sweden)

    Joel Domínguez Viveros

    2015-04-01

    Full Text Available The objectives were to estimate variance components, and direct (h2 and maternal (m2 heritability in the growth of Tropicarne cattle based on a random regression model using B-Splines for random effects modeling. Information from 12 890 monthly weightings of 1787 calves, from birth to 24 months old, was analyzed. The pedigree included 2504 animals. The random effects model included genetic and permanent environmental (direct and maternal of cubic order, and residuals. The fixed effects included contemporaneous groups (year – season of weighed, sex and the covariate age of the cow (linear and quadratic. The B-Splines were defined in four knots through the growth period analyzed. Analyses were performed with the software Wombat. The variances (phenotypic and residual presented a similar behavior; of 7 to 12 months of age had a negative trend; from birth to 6 months and 13 to 18 months had positive trend; after 19 months were maintained constant. The m2 were low and near to zero, with an average of 0.06 in an interval of 0.04 to 0.11; the h2 also were close to zero, with an average of 0.10 in an interval of 0.03 to 0.23.

  13. Non-Stationary Hydrologic Frequency Analysis using B-Splines Quantile Regression

    Science.gov (United States)

    Nasri, B.; St-Hilaire, A.; Bouezmarni, T.; Ouarda, T.

    2015-12-01

    Hydrologic frequency analysis is commonly used by engineers and hydrologists to provide the basic information on planning, design and management of hydraulic structures and water resources system under the assumption of stationarity. However, with increasing evidence of changing climate, it is possible that the assumption of stationarity would no longer be valid and the results of conventional analysis would become questionable. In this study, we consider a framework for frequency analysis of extreme flows based on B-Splines quantile regression, which allows to model non-stationary data that have a dependence on covariates. Such covariates may have linear or nonlinear dependence. A Markov Chain Monte Carlo (MCMC) algorithm is used to estimate quantiles and their posterior distributions. A coefficient of determination for quantiles regression is proposed to evaluate the estimation of the proposed model for each quantile level. The method is applied on annual maximum and minimum streamflow records in Ontario, Canada. Climate indices are considered to describe the non-stationarity in these variables and to estimate the quantiles in this case. The results show large differences between the non-stationary quantiles and their stationary equivalents for annual maximum and minimum discharge with high annual non-exceedance probabilities. Keywords: Quantile regression, B-Splines functions, MCMC, Streamflow, Climate indices, non-stationarity.

  14. B-spline solver for one-electron Schrödinger equation

    Science.gov (United States)

    Romanowski, Zbigniew

    2011-11-01

    A numerical algorithm for solving the one-electron Schrödinger equation is presented. The algorithm is based on the Finite Element method, and the basis functions are tensor products of univariate B-splines. The application of cubic or higher order B-splines guarantees that the searched solution belongs to a continuous and one time differentiable function space, which is a desirable property in the Kohn-Sham equation context from the Density Functional Theory with pseudopotential approximation. The theoretical background of the numerical algorithm is presented, and additionally, the implementation on parallel computers with distributed memory is described. The current implementation of the algorithm uses the MPI, HYPRE and ParMETIS libraries to distribute matrices on processing units. Additionally, the POBPC algorithm from HYPRE library is used to solve the algebraic generalized eigenvalue problem. The proposed algorithm works for any smooth interaction potential, where the domain of the problem is a finite subspace of the ℝ3 space. The accuracy of the algorithm is demonstrated for a selected interaction potential. In the current stage, the algorithm can be applied to solve the linearized Kohn-Sham equation for molecular systems.

  15. A novel knot selection method for the error-bounded B-spline curve fitting of sampling points in the measuring process

    International Nuclear Information System (INIS)

    Liang, Fusheng; Zhao, Ji; Ji, Shijun; Zhang, Bing; Fan, Cheng

    2017-01-01

    The B-spline curve has been widely used in the reconstruction of measurement data. The error-bounded sampling points reconstruction can be achieved by the knot addition method (KAM) based B-spline curve fitting. In KAM, the selection pattern of initial knot vector has been associated with the ultimate necessary number of knots. This paper provides a novel initial knots selection method to condense the knot vector required for the error-bounded B-spline curve fitting. The initial knots are determined by the distribution of features which include the chord length (arc length) and bending degree (curvature) contained in the discrete sampling points. Firstly, the sampling points are fitted into an approximate B-spline curve Gs with intensively uniform knot vector to substitute the description of the feature of the sampling points. The feature integral of Gs is built as a monotone increasing function in an analytic form. Then, the initial knots are selected according to the constant increment of the feature integral. After that, an iterative knot insertion (IKI) process starting from the initial knots is introduced to improve the fitting precision, and the ultimate knot vector for the error-bounded B-spline curve fitting is achieved. Lastly, two simulations and the measurement experiment are provided, and the results indicate that the proposed knot selection method can reduce the number of ultimate knots available. (paper)

  16. B-spline solution of a singularly perturbed boundary value problem arising in biology

    International Nuclear Information System (INIS)

    Lin Bin; Li Kaitai; Cheng Zhengxing

    2009-01-01

    We use B-spline functions to develop a numerical method for solving a singularly perturbed boundary value problem associated with biology science. We use B-spline collocation method, which leads to a tridiagonal linear system. The accuracy of the proposed method is demonstrated by test problems. The numerical result is found in good agreement with exact solution.

  17. Solving the nonlinear Schrödinger equation using cubic B-spline interpolation and finite difference methods

    Science.gov (United States)

    Ahmad, Azhar; Azmi, Amirah; Majid, Ahmad Abd.; Hamid, Nur Nadiah Abd

    2017-08-01

    In this paper, Nonlinear Schrödinger (NLS) equation with Neumann boundary conditions is solved using finite difference method (FDM) and cubic B-spline interpolation method (CuBSIM). First, the approach is based on the FDM applied on the time and space discretization with the help of theta-weighted method. However, our main interest is the second approach, whereby FDM is applied on the time discretization and cubic B-spline is utilized as an interpolation function in the space dimension with the same help of theta-weighted method. The CuBSIM is shown to be stable by using von Neumann stability analysis. The proposed method is tested on a test problem with single soliton motion of the NLS equation. The accuracy of the numerical results is measured by the Euclidean-norm and infinity-norm. CuBSIM is found to produce more accurate results than the FDM.

  18. Numerical simulation of Burgers' equation using cubic B-splines

    Science.gov (United States)

    Lakshmi, C.; Awasthi, Ashish

    2017-03-01

    In this paper, a numerical θ scheme is proposed for solving nonlinear Burgers' equation. By employing Hopf-Cole transformation, the nonlinear Burgers' equation is linearized to the linear Heat equation. The resulting Heat equation is further solved by cubic B-splines. The time discretization of linear Heat equation is carried out using Crank-Nicolson scheme (θ = {1 \\over 2}) as well as backward Euler scheme (θ = 1). Accuracy in temporal direction is improved by using Richardson extrapolation. This method hence possesses fourth order accuracy both in space and time. The system of matrix which arises by using cubic splines is always diagonal. Therefore, working with splines has the advantage of reduced computational cost and easy implementation. Stability of the schemes have been discussed in detail and shown to be unconditionally stable. Three examples have been examined and the L2 and L∞ error norms have been calculated to establish the performance of the method. The numerical results obtained on applying this method have shown to give more accurate results than existing works of Kutluay et al. [1], Ozis et al. [2], Dag et al. [3], Salkuyeh et al. [4] and Korkmaz et al. [5].

  19. Research on None Uniform Rational B-spline Surface and Agent for Numerically Controlled Layout Design

    Directory of Open Access Journals (Sweden)

    Zhigang XU

    2014-07-01

    Full Text Available Research on the integrated NC conceptual layout design (I-NCC concerned with a broader area of interests. The key issues of I-NCC system are associated with NURBS and agent. Firstly, formulas for the derivatives and normal vectors of non-rational B-spline and NURBS are proved based on de BOOR’s recursive formula. Compared with the existing approaches targeting at the non-rational B- spline basis functions, these equations are directly targeted at the controlling points, so the algorithms and programs for NURBS curve and surface can also be applied to the derivatives and normals, the calculating performance is increased. A simplified equation is also proved in this paper. Secondly, the NC conceptual configuration design is transformed into a 3D cuboids layout problem by the introduction of three typical modules: translation module, rotation module and base module based on the analysis of the normal unit vector of work piece surface (in NURBS format. 3D cuboids layout problem is viewed as a generalization of the quadratic assignment problem and therefore belongs to the class of NP hard problems. Apart from the complexity and variety of 3D layout optimization algorithms, this paper introduces agent oriented cooperative design system. Agent models and the corresponding design management systems are put forward to deal with the creative NC layout design. Though the key theoretical issues are now applied to the NC system design, there should be more industrial applications because of the prevalent proliferation nature of NURBS and agent.

  20. A numerical investigation of the GRLW equation using lumped Galerkin approach with cubic B-spline.

    Science.gov (United States)

    Zeybek, Halil; Karakoç, S Battal Gazi

    2016-01-01

    In this work, we construct the lumped Galerkin approach based on cubic B-splines to obtain the numerical solution of the generalized regularized long wave equation. Applying the von Neumann approximation, it is shown that the linearized algorithm is unconditionally stable. The presented method is implemented to three test problems including single solitary wave, interaction of two solitary waves and development of an undular bore. To prove the performance of the numerical scheme, the error norms [Formula: see text] and [Formula: see text] and the conservative quantities [Formula: see text], [Formula: see text] and [Formula: see text] are computed and the computational data are compared with the earlier works. In addition, the motion of solitary waves is described at different time levels.

  1. Computing global minimizers to a constrained B-spline image registration problem from optimal l1 perturbations to block match data.

    Science.gov (United States)

    Castillo, Edward; Castillo, Richard; Fuentes, David; Guerrero, Thomas

    2014-04-01

    Block matching is a well-known strategy for estimating corresponding voxel locations between a pair of images according to an image similarity metric. Though robust to issues such as image noise and large magnitude voxel displacements, the estimated point matches are not guaranteed to be spatially accurate. However, the underlying optimization problem solved by the block matching procedure is similar in structure to the class of optimization problem associated with B-spline based registration methods. By exploiting this relationship, the authors derive a numerical method for computing a global minimizer to a constrained B-spline registration problem that incorporates the robustness of block matching with the global smoothness properties inherent to B-spline parameterization. The method reformulates the traditional B-spline registration problem as a basis pursuit problem describing the minimall1-perturbation to block match pairs required to produce a B-spline fitting error within a given tolerance. The sparsity pattern of the optimal perturbation then defines a voxel point cloud subset on which the B-spline fit is a global minimizer to a constrained variant of the B-spline registration problem. As opposed to traditional B-spline algorithms, the optimization step involving the actual image data is addressed by block matching. The performance of the method is measured in terms of spatial accuracy using ten inhale/exhale thoracic CT image pairs (available for download atwww.dir-lab.com) obtained from the COPDgene dataset and corresponding sets of expert-determined landmark point pairs. The results of the validation procedure demonstrate that the method can achieve a high spatial accuracy on a significantly complex image set. The proposed methodology is demonstrated to achieve a high spatial accuracy and is generalizable in that in can employ any displacement field parameterization described as a least squares fit to block match generated estimates. Thus, the framework

  2. Automatic motion correction for in vivo human skin optical coherence tomography angiography through combined rigid and nonrigid registration

    Science.gov (United States)

    Wei, David Wei; Deegan, Anthony J.; Wang, Ruikang K.

    2017-06-01

    When using optical coherence tomography angiography (OCTA), the development of artifacts due to involuntary movements can severely compromise the visualization and subsequent quantitation of tissue microvasculatures. To correct such an occurrence, we propose a motion compensation method to eliminate artifacts from human skin OCTA by means of step-by-step rigid affine registration, rigid subpixel registration, and nonrigid B-spline registration. To accommodate this remedial process, OCTA is conducted using two matching all-depth volume scans. Affine transformation is first performed on the large vessels of the deep reticular dermis, and then the resulting affine parameters are applied to all-depth vasculatures with a further subpixel registration to refine the alignment between superficial smaller vessels. Finally, the coregistration of both volumes is carried out to result in the final artifact-free composite image via an algorithm based upon cubic B-spline free-form deformation. We demonstrate that the proposed method can provide a considerable improvement to the final en face OCTA images with substantial artifact removal. In addition, the correlation coefficients and peak signal-to-noise ratios of the corrected images are evaluated and compared with those of the original images, further validating the effectiveness of the proposed method. We expect that the proposed method can be useful in improving qualitative and quantitative assessment of the OCTA images of scanned tissue beds.

  3. A B-Spline Framework for Smooth Derivative Computation in Well Test Analysis Using Diagnostic Plots.

    Science.gov (United States)

    Tago, Josué; Hernández-Espriú, Antonio

    2018-01-01

    In the oil and gas industry, well test analysis using derivative plots, has been the core technique in examining reservoir and well behavior over the last three decades. Recently, diagnostics plots have gained recognition in the field of hydrogeology; however, this tool is still underused by groundwater professionals. The foremost drawback is that the derivative function must be computed from noisy field measurements, usually based on finite-difference schemes, which complicates the analysis. We propose a B-spline framework for smooth derivative computation, referred to as Constrained Quartic B-Splines with Free Knots. The approach presents the following novelties in relation to methodological precedents: (1) the use of automatic equality derivative constraints, (2) a knot removal strategy and (3) the introduction of a Boolean shape parameter that defines the number of initial knots to choose. These can lead to evaluate both simple (manually recorded drawdown measurements) and complex (transducer measured records) datasets. Furthermore, we propose an additional shape preserving smoothing preprocess procedure, as a simple, fast and robust method to deal with extremely noisy signals. Our framework was tested in four pumping tests by comparing the spline derivative with regards to the Bourdet algorithm, and we found that the latter is rather noisy (even for large differentiation intervals) and the second derivative response is basically unreadable. In contrast, the spline first and second derivative led to smoother responses, which are more suitable for interpretation. We concluded that the proposed framework is a welcome contribution to evaluate reliable aquifer tests using derivative-diagnostic plots. © 2017, National Ground Water Association.

  4. Numerical solution of system of boundary value problems using B-spline with free parameter

    Science.gov (United States)

    Gupta, Yogesh

    2017-01-01

    This paper deals with method of B-spline solution for a system of boundary value problems. The differential equations are useful in various fields of science and engineering. Some interesting real life problems involve more than one unknown function. These result in system of simultaneous differential equations. Such systems have been applied to many problems in mathematics, physics, engineering etc. In present paper, B-spline and B-spline with free parameter methods for the solution of a linear system of second-order boundary value problems are presented. The methods utilize the values of cubic B-spline and its derivatives at nodal points together with the equations of the given system and boundary conditions, ensuing into the linear matrix equation.

  5. B-Spline potential function for maximum a-posteriori image reconstruction in fluorescence microscopy

    Directory of Open Access Journals (Sweden)

    Shilpa Dilipkumar

    2015-03-01

    Full Text Available An iterative image reconstruction technique employing B-Spline potential function in a Bayesian framework is proposed for fluorescence microscopy images. B-splines are piecewise polynomials with smooth transition, compact support and are the shortest polynomial splines. Incorporation of the B-spline potential function in the maximum-a-posteriori reconstruction technique resulted in improved contrast, enhanced resolution and substantial background reduction. The proposed technique is validated on simulated data as well as on the images acquired from fluorescence microscopes (widefield, confocal laser scanning fluorescence and super-resolution 4Pi microscopy. A comparative study of the proposed technique with the state-of-art maximum likelihood (ML and maximum-a-posteriori (MAP with quadratic potential function shows its superiority over the others. B-Spline MAP technique can find applications in several imaging modalities of fluorescence microscopy like selective plane illumination microscopy, localization microscopy and STED.

  6. BSR: B-spline atomic R-matrix codes

    Science.gov (United States)

    Zatsarinny, Oleg

    2006-02-01

    BSR is a general program to calculate atomic continuum processes using the B-spline R-matrix method, including electron-atom and electron-ion scattering, and radiative processes such as bound-bound transitions, photoionization and polarizabilities. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme by including terms of the Breit-Pauli Hamiltonian. New version program summaryTitle of program: BSR Catalogue identifier: ADWY Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADWY Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computers on which the program has been tested: Microway Beowulf cluster; Compaq Beowulf cluster; DEC Alpha workstation; DELL PC Operating systems under which the new version has been tested: UNIX, Windows XP Programming language used: FORTRAN 95 Memory required to execute with typical data: Typically 256-512 Mwords. Since all the principal dimensions are allocatable, the available memory defines the maximum complexity of the problem No. of bits in a word: 8 No. of processors used: 1 Has the code been vectorized or parallelized?: no No. of lines in distributed program, including test data, etc.: 69 943 No. of bytes in distributed program, including test data, etc.: 746 450 Peripherals used: scratch disk store; permanent disk store Distribution format: tar.gz Nature of physical problem: This program uses the R-matrix method to calculate electron-atom and electron-ion collision processes, with options to calculate radiative data, photoionization, etc. The calculations can be performed in LS-coupling or in an intermediate-coupling scheme, with options to include Breit-Pauli terms in the Hamiltonian. Method of solution: The R-matrix method is used [P.G. Burke, K.A. Berrington, Atomic and Molecular Processes: An R-Matrix Approach, IOP Publishing, Bristol, 1993; P.G. Burke, W.D. Robb, Adv. At. Mol. Phys. 11 (1975) 143; K.A. Berrington, W.B. Eissner, P.H. Norrington, Comput

  7. PetIGA-MF: a multi-field high-performance toolbox for structure-preserving B-splines spaces

    KAUST Repository

    Sarmiento, Adel

    2016-10-01

    We describe a high-performance solution framework for isogeometric discrete differential forms based on B-splines: PetIGA-MF. Built on top of PetIGA, an open-source library we have built and developed over the last decade, PetIGA-MF is a general multi-field discretization tool. To test the capabilities of our implementation, we solve different viscous flow problems such as Darcy, Stokes, Brinkman, and Navier-Stokes equations. Several convergence benchmarks based on manufactured solutions are presented assuring optimal convergence rates of the approximations, showing the accuracy and robustness of our solver.

  8. A GPU-based symmetric non-rigid image registration method in human lung.

    Science.gov (United States)

    Haghighi, Babak; D Ellingwood, Nathan; Yin, Youbing; Hoffman, Eric A; Lin, Ching-Long

    2018-03-01

    Quantitative computed tomography (QCT) of the lungs plays an increasing role in identifying sub-phenotypes of pathologies previously lumped into broad categories such as chronic obstructive pulmonary disease and asthma. Methods for image matching and linking multiple lung volumes have proven useful in linking structure to function and in the identification of regional longitudinal changes. Here, we seek to improve the accuracy of image matching via the use of a symmetric multi-level non-rigid registration employing an inverse consistent (IC) transformation whereby images are registered both in the forward and reverse directions. To develop the symmetric method, two similarity measures, the sum of squared intensity difference (SSD) and the sum of squared tissue volume difference (SSTVD), were used. The method is based on a novel generic mathematical framework to include forward and backward transformations, simultaneously, eliminating the need to compute the inverse transformation. Two implementations were used to assess the proposed method: a two-dimensional (2-D) implementation using synthetic examples with SSD, and a multi-core CPU and graphics processing unit (GPU) implementation with SSTVD for three-dimensional (3-D) human lung datasets (six normal adults studied at total lung capacity (TLC) and functional residual capacity (FRC)). Success was evaluated in terms of the IC transformation consistency serving to link TLC to FRC. 2-D registration on synthetic images, using both symmetric and non-symmetric SSD methods, and comparison of displacement fields showed that the symmetric method gave a symmetrical grid shape and reduced IC errors, with the mean values of IC errors decreased by 37%. Results for both symmetric and non-symmetric transformations of human datasets showed that the symmetric method gave better results for IC errors in all cases, with mean values of IC errors for the symmetric method lower than the non-symmetric methods using both SSD and SSTVD

  9. Random regression analyses using B-splines to model growth of Australian Angus cattle

    Directory of Open Access Journals (Sweden)

    Meyer Karin

    2005-09-01

    Full Text Available Abstract Regression on the basis function of B-splines has been advocated as an alternative to orthogonal polynomials in random regression analyses. Basic theory of splines in mixed model analyses is reviewed, and estimates from analyses of weights of Australian Angus cattle from birth to 820 days of age are presented. Data comprised 84 533 records on 20 731 animals in 43 herds, with a high proportion of animals with 4 or more weights recorded. Changes in weights with age were modelled through B-splines of age at recording. A total of thirteen analyses, considering different combinations of linear, quadratic and cubic B-splines and up to six knots, were carried out. Results showed good agreement for all ages with many records, but fluctuated where data were sparse. On the whole, analyses using B-splines appeared more robust against "end-of-range" problems and yielded more consistent and accurate estimates of the first eigenfunctions than previous, polynomial analyses. A model fitting quadratic B-splines, with knots at 0, 200, 400, 600 and 821 days and a total of 91 covariance components, appeared to be a good compromise between detailedness of the model, number of parameters to be estimated, plausibility of results, and fit, measured as residual mean square error.

  10. Cubic B-spline solution for two-point boundary value problem with AOR iterative method

    Science.gov (United States)

    Suardi, M. N.; Radzuan, N. Z. F. M.; Sulaiman, J.

    2017-09-01

    In this study, the cubic B-spline approximation equation has been derived by using the cubic B-spline discretization scheme to solve two-point boundary value problems. In addition to that, system of cubic B-spline approximation equations is generated from this spline approximation equation in order to get the numerical solutions. To do this, the Accelerated Over Relaxation (AOR) iterative method has been used to solve the generated linear system. For the purpose of comparison, the GS iterative method is designated as a control method to compare between SOR and AOR iterative methods. There are two examples of proposed problems that have been considered to examine the efficiency of these proposed iterative methods via three parameters such as their number of iterations, computational time and maximum absolute error. The numerical results are obtained from these iterative methods, it can be concluded that the AOR iterative method is slightly efficient as compared with SOR iterative method.

  11. Cubic B-spline calibration for 3D super-resolution measurements using astigmatic imaging.

    Science.gov (United States)

    Proppert, Sven; Wolter, Steve; Holm, Thorge; Klein, Teresa; van de Linde, Sebastian; Sauer, Markus

    2014-05-05

    In recent years three-dimensional (3D) super-resolution fluorescence imaging by single-molecule localization (localization microscopy) has gained considerable interest because of its simple implementation and high optical resolution. Astigmatic and biplane imaging are experimentally simple methods to engineer a 3D-specific point spread function (PSF), but existing evaluation methods have proven problematic in practical application. Here we introduce the use of cubic B-splines to model the relationship of axial position and PSF width in the above mentioned approaches and compare the performance with existing methods. We show that cubic B-splines are the first method that can combine precision, accuracy and simplicity.

  12. Theoretical complex Stark energies of lithium by a complex scaling plus the B-spline approach

    Energy Technology Data Exchange (ETDEWEB)

    Meng Huiyan [School of Applied Science of Taiyuan University of Science and Technology, Taiyuan 030024 (China); Zhang Yuexia; Kang Shuai; Shi Tingyn; Zhan Mingsheng [State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071 (China)], E-mail: menghy@mail.ustc.edu.cn, E-mail: tyshi@wipm.ac.cn, E-mail: mszhan@wipm.ac.cn

    2008-08-14

    The B-spline-based coordinate rotation method plus the model potential approach is applied to investigate the complex energies of low-lying resonances of the lithium atom in an electric field. Our results are compared with two recent calculations by a state-specific complex eigenvalue Schroedinger equation (CESE) (Themelis and Nicolaides 2001 J. Phys. B: At. Mol. Opt. Phys. 34 2905) and complex absorbing potential (CAP) (Sahoo and Ho 2000 J. Phys. B: At. Mol. Opt. Phys. 33 5151) methods, which are in controversy. The positions of resonances by the present calculation are found to be in agreement with theoretical data obtained by both the CESE and CAP methods. Our investigation clarifies that the contradiction about '4f{sub 0}' resonant position varies with the electric field. However, for the width of resonances, our results are only consistent with those by the CESE method for all strengths of the electric field under consideration. A detailed comparison on the m = 0 state among these three calculations shows that the unusual behaviour of width of resonances in the weak-field case by the CAP method is not a 'new' finding but a misguiding resulting from nonconvergent results. The systematic agreement between our model potential calculation and the ab initio calculation by the CESE for lithium indicates that the present proposed method is reliable and appropriate to simplify the calculation of the alkali metal atom in external fields.

  13. Kinetic energy classification and smoothing for compact B-spline basis sets in quantum Monte Carlo

    Science.gov (United States)

    Krogel, Jaron T.; Reboredo, Fernando A.

    2018-01-01

    Quantum Monte Carlo calculations of defect properties of transition metal oxides have become feasible in recent years due to increases in computing power. As the system size has grown, availability of on-node memory has become a limiting factor. Saving memory while minimizing computational cost is now a priority. The main growth in memory demand stems from the B-spline representation of the single particle orbitals, especially for heavier elements such as transition metals where semi-core states are present. Despite the associated memory costs, splines are computationally efficient. In this work, we explore alternatives to reduce the memory usage of splined orbitals without significantly affecting numerical fidelity or computational efficiency. We make use of the kinetic energy operator to both classify and smooth the occupied set of orbitals prior to splining. By using a partitioning scheme based on the per-orbital kinetic energy distributions, we show that memory savings of about 50% is possible for select transition metal oxide systems. For production supercells of practical interest, our scheme incurs a performance penalty of less than 5%.

  14. A spectral/B-spline method for the Navier-Stokes equations in unbounded domains

    CERN Document Server

    Dufresne, L

    2003-01-01

    The numerical method presented in this paper aims at solving the incompressible Navier-Stokes equations in unbounded domains. The problem is formulated in cylindrical coordinates and the method is based on a Galerkin approximation scheme that makes use of vector expansions that exactly satisfy the continuity constraint. More specifically, the divergence-free basis vector functions are constructed with Fourier expansions in the theta and z directions while mapped B-splines are used in the semi-infinite radial direction. Special care has been taken to account for the particular analytical behaviors at both end points r=0 and r-> infinity. A modal reduction algorithm has also been implemented in the azimuthal direction, allowing for a relaxation of the CFL constraint on the timestep size and a possibly significant reduction of the number of DOF. The time marching is carried out using a mixed quasi-third order scheme. Besides the advantages of a divergence-free formulation and a quasi-spectral convergence, the lo...

  15. N-dimensional non uniform rational B-splines for metamodeling

    Energy Technology Data Exchange (ETDEWEB)

    Turner, Cameron J [Los Alamos National Laboratory; Crawford, Richard H [UT - AUSTIN

    2008-01-01

    Non Uniform Rational B-splines (NURBs) have unique properties that make them attractive for engineering metamodeling applications. NURBs are known to accurately model many different continuous curve and surface topologies in 1-and 2-variate spaces. However, engineering metamodels of the design space often require hypervariate representations of multidimensional outputs. In essence, design space metamodels are hyperdimensional constructs with a dimensionality determined by their input and output variables. To use NURBs as the basis for a metamodel in a hyperdimensional space, traditional geometric fitting techniques must be adapted to hypervariate and hyperdimensional spaces composed of both continuous and discontinuous variable types. In this paper, we describe the necessary adaptations for the development of a NURBs-based metamodel called a Hyperdimensional Performance Model or HyPerModel. HyPerModels are capable of accurately and reliably modeling nonlinear hyperdimensional objects defined by both continuous and discontinuous variables of a wide variety of topologies, such as those that define typical engineering design spaces. We demonstrate this ability by successfully generating accurate HyPerModels of 10 trial functions laying the foundation for future work with N-dimensional NURBs in design space applications.

  16. Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting

    Science.gov (United States)

    Shamonin, D. P.; Staring, M.; Bakker, M. E.; Xiao, C.; Stolk, J.; Reiber, J. H. C.; Stoel, B. C.

    2012-02-01

    We present an automatic lung lobe segmentation algorithm for COPD patients. The method enhances fissures, removes unlikely fissure candidates, after which a B-spline is fitted iteratively through the remaining candidate objects. The iterative fitting approach circumvents the need to classify each object as being part of the fissure or being noise, and allows the fissure to be detected in multiple disconnected parts. This property is beneficial for good performance in patient data, containing incomplete and disease-affected fissures. The proposed algorithm is tested on 22 COPD patients, resulting in accurate lobe-based densitometry, and a median overlap of the fissure (defined 3 voxels wide) with an expert ground truth of 0.65, 0.54 and 0.44 for the three main fissures. This compares to complete lobe overlaps of 0.99, 0.98, 0.98, 0.97 and 0.87 for the five main lobes, showing promise for lobe segmentation on data of patients with moderate to severe COPD.

  17. Constraint-based simulation for non-rigid real-time registration.

    Science.gov (United States)

    Courtecuisse, Hadrien; Peterlik, Igor; Trivisonne, Raffaella; Duriez, Christian; Cotin, Stéphane

    2014-01-01

    In this paper we propose a method to address the problem of non-rigid registration in real-time. We use Lagrange multipliers and soft sliding constraints to combine data acquired from dynamic image sequence and a biomechanical model of the structure of interest. The biomechanical model plays a role of regularization to improve the robustness and the flexibility of the registration. We apply our method to a pre-operative 3D CT scan of a porcine liver that is registered to a sequence of 2D dynamic MRI slices during the respiratory motion. The finite element simulation provides a full 3D representation (including heterogeneities such as vessels, tumor,...) of the anatomical structure in real-time.

  18. Approximation and geomatric modeling with simplex B-splines associates with irregular triangular

    NARCIS (Netherlands)

    Auerbach, S.; Gmelig Meyling, R.H.J.; Neamtu, M.; Neamtu, M.; Schaeben, H.

    1991-01-01

    Bivariate quadratic simplical B-splines defined by their corresponding set of knots derived from a (suboptimal) constrained Delaunay triangulation of the domain are employed to obtain a C1-smooth surface. The generation of triangle vertices is adjusted to the areal distribution of the data in the

  19. Two Dimensional Complex Wavenumber Dispersion Analysis using B-Spline Finite Elements Method

    Directory of Open Access Journals (Sweden)

    Y. Mirbagheri

    2016-01-01

    Full Text Available  Grid dispersion is one of the criteria of validating the finite element method (FEM in simulating acoustic or elastic wave propagation. The difficulty usually arisen when using this method for simulation of wave propagation problems, roots in the discontinuous field which causes the magnitude and the direction of the wave speed vector, to vary from one element to the adjacent one. To solve this problem and improve the response accuracy, two approaches are usually suggested: changing the integration method and changing shape functions. The Finite Element iso-geometric analysis (IGA is used in this research. In the IGA, the B-spline or non-uniform rational B-spline (NURBS functions are used which improve the response accuracy, especially in one-dimensional structural dynamics problems. At the boundary of two adjacent elements, the degree of continuity of the shape functions used in IGA can be higher than zero. In this research, for the first time, a two dimensional grid dispersion analysis has been used for wave propagation in plane strain problems using B-spline FEM is presented. Results indicate that, for the same degree of freedom, the grid dispersion of B-spline FEM is about half of the grid dispersion of the classic FEM.

  20. B-Spline Approximations of the Gaussian, their Gabor Frame Properties, and Approximately Dual Frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2017-01-01

    of a very simple form, leading to “almost perfect reconstruction� within any desired error tolerance whenever the product ab is sufficiently small. In contrast, the known (exact) dual windows have a very complicated form. A similar analysis is sketched with the scaled B-splines replaced by certain...

  1. Solving the nonlinear Schrödinger equation using cubic B-spline interpolation and finite difference methods on dual solitons

    Science.gov (United States)

    Ahmad, Azhar; Azmi, Amirah; Majid, Ahmad Abd.; Hamid, Nur Nadiah Abd

    2017-04-01

    In this paper, Nonlinear Schrödinger (NLS) equation with Neumann boundary conditions is solved using cubic B-spline interpolation method (CuBSIM) and finite difference method (FDM). Firstly, FDM is applied on the time discretization and cubic B-spline is utilized as an interpolation function in the space dimension with the help of theta-weighted method. The second approach is based on the FDM applied on the time and space discretization with the help of theta-weighted method. The CuBSIM is shown to be stable by using von Neumann stability analysis. The proposed method is tested on the interaction of the dual solitons of the NLS equation. The accuracy of the numerical results is measured by the Euclidean-norm and infinity-norm. CuBSIM is found to produce more accurate results than the FDM.

  2. A finite strain Eulerian formulation for compressible and nearly incompressible hyperelasticity using high-order B-spline finite elements

    KAUST Repository

    Duddu, Ravindra

    2011-10-05

    We present a numerical formulation aimed at modeling the nonlinear response of elastic materials using large deformation continuum mechanics in three dimensions. This finite element formulation is based on the Eulerian description of motion and the transport of the deformation gradient. When modeling a nearly incompressible solid, the transport of the deformation gradient is decomposed into its isochoric part and the Jacobian determinant as independent fields. A homogeneous isotropic hyperelastic solid is assumed and B-splines-based finite elements are used for the spatial discretization. A variational multiscale residual-based approach is employed to stabilize the transport equations. The performance of the scheme is explored for both compressible and nearly incompressible applications. The numerical results are in good agreement with theory illustrating the viability of the computational scheme. © 2011 John Wiley & Sons, Ltd.

  3. PEMODELAN B-SPLINE DAN MARS PADA NILAI UJIAN MASUK TERHADAP IPK MAHASISWA JURUSAN DISAIN KOMUNIKASI VISUAL UK. PETRA SURABAYA

    Directory of Open Access Journals (Sweden)

    I Nyoman Budiantara

    2006-01-01

    Full Text Available Regression analysis is constructed for capturing the influences of independent variables to dependent ones. It can be done by looking at the relationship between those variables. This task of approximating the mean function can be done essentially in two ways. The quiet often use parametric approach is to assume that the mean curve has some prespecified functional forms. Alternatively, nonparametric approach, .i.e., without reference to a specific form, is used when there is no information of the regression function form (Haerdle, 1990. Therefore nonparametric approach has more flexibilities than the parametric one. The aim of this research is to find the best fit model that captures relationship between admission test score to the GPA. This particular data was taken from the Department of Design Communication and Visual, Petra Christian University, Surabaya for year 1999. Those two approaches were used here. In the parametric approach, we use simple linear, quadric cubic regression, and in the nonparametric ones, we use B-Spline and Multivariate Adaptive Regression Splines (MARS. Overall, the best model was chosen based on the maximum determinant coefficient. However, for MARS, the best model was chosen based on the GCV, minimum MSE, maximum determinant coefficient. Abstract in Bahasa Indonesia : Analisa regresi digunakan untuk melihat pengaruh variabel independen terhadap variabel dependent dengan terlebih dulu melihat pola hubungan variabel tersebut. Hal ini dapat dilakukan dengan melalui dua pendekatan. Pendekatan yang paling umum dan seringkali digunakan adalah pendekatan parametrik. Pendekatan parametrik mengasumsikan bentuk model sudah ditentukan. Apabila tidak ada informasi apapun tentang bentuk dari fungsi regresi, maka pendekatan yang digunakan adalah pendekatan nonparametrik. (Haerdle, 1990. Karena pendekatan tidak tergantung pada asumsi bentuk kurva tertentu, sehingga memberikan fleksibelitas yang lebih besar. Tujuan penelitian ini

  4. Nonrigid Registration of Brain Tumor Resection MR Images Based on Joint Saliency Map and Keypoint Clustering

    Directory of Open Access Journals (Sweden)

    Binjie Qin

    2009-12-01

    Full Text Available This paper proposes a novel global-to-local nonrigid brain MR image registration to compensate for the brain shift and the unmatchable outliers caused by the tumor resection. The mutual information between the corresponding salient structures, which are enhanced by the joint saliency map (JSM, is maximized to achieve a global rigid registration of the two images. Being detected and clustered at the paired contiguous matching areas in the globally registered images, the paired pools of DoG keypoints in combination with the JSM provide a useful cluster-to-cluster correspondence to guide the local control-point correspondence detection and the outlier keypoint rejection. Lastly, a quasi-inverse consistent deformation is smoothly approximated to locally register brain images through the mapping the clustered control points by compact support radial basis functions. The 2D implementation of the method can model the brain shift in brain tumor resection MR images, though the theory holds for the 3D case.

  5. Modeling of type-2 fuzzy cubic B-spline surface for flood data problem in Malaysia

    Science.gov (United States)

    Bidin, Mohd Syafiq; Wahab, Abd. Fatah

    2017-08-01

    Malaysia possesses a low and sloping land areas which may cause flood. The flood phenomenon can be analyzed if the surface data of the study area can be modeled by geometric modeling. Type-2 fuzzy data for the flood data is defined using type-2 fuzzy set theory in order to solve the uncertainty of complex data. Then, cubic B-spline surface function is used to produce a smooth surface. Three main processes are carried out to find a solution to crisp type-2 fuzzy data which is fuzzification (α-cut operation), type-reduction and defuzzification. Upon conducting these processes, Type-2 Fuzzy Cubic B-Spline Surface Model is applied to visualize the surface data of the flood areas that are complex uncertainty.

  6. Investigation of confined hydrogen atom in spherical cavity, using B-splines basis set

    Directory of Open Access Journals (Sweden)

    M Barezi

    2011-03-01

    Full Text Available Studying confined quantum systems (CQS is very important in nano technology. One of the basic CQS is a hydrogen atom confined in spherical cavity. In this article, eigenenergies and eigenfunctions of hydrogen atom in spherical cavity are calculated, using linear variational method. B-splines are used as basis functions, which can easily construct the trial wave functions with appropriate boundary conditions. The main characteristics of B-spline are its high localization and its flexibility. Besides, these functions have numerical stability and are able to spend high volume of calculation with good accuracy. The energy levels as function of cavity radius are analyzed. To check the validity and efficiency of the proposed method, extensive convergence test of eigenenergies in different cavity sizes has been carried out.

  7. Numerical solution of fractional differential equations using cubic B-spline wavelet collocation method

    Science.gov (United States)

    Li, Xinxiu

    2012-10-01

    Physical processes with memory and hereditary properties can be best described by fractional differential equations due to the memory effect of fractional derivatives. For that reason reliable and efficient techniques for the solution of fractional differential equations are needed. Our aim is to generalize the wavelet collocation method to fractional differential equations using cubic B-spline wavelet. Analytical expressions of fractional derivatives in Caputo sense for cubic B-spline functions are presented. The main characteristic of the approach is that it converts such problems into a system of algebraic equations which is suitable for computer programming. It not only simplifies the problem but also speeds up the computation. Numerical results demonstrate the validity and applicability of the method to solve fractional differential equation.

  8. Digital anthropomorphic phantoms of non-rigid human respiratory and voluntary body motion for investigating motion correction in emission imaging

    International Nuclear Information System (INIS)

    Könik, Arda; Johnson, Karen L; Dasari, Paul; Pretorius, P H; Dey, Joyoni; King, Michael A; Connolly, Caitlin M; Segars, Paul W; Lindsay, Clifford

    2014-01-01

    The development of methods for correcting patient motion in emission tomography has been receiving increased attention. Often the performance of these methods is evaluated through simulations using digital anthropomorphic phantoms, such as the commonly used extended cardiac torso (XCAT) phantom, which models both respiratory and cardiac motion based on human studies. However, non-rigid body motion, which is frequently seen in clinical studies, is not present in the standard XCAT phantom. In addition, respiratory motion in the standard phantom is limited to a single generic trend. In this work, to obtain a more realistic representation of motion, we developed a series of individual-specific XCAT phantoms, modeling non-rigid respiratory and non-rigid body motions derived from the magnetic resonance imaging (MRI) acquisitions of volunteers. Acquisitions were performed in the sagittal orientation using the Navigator methodology. Baseline (no motion) acquisitions at end-expiration were obtained at the beginning of each imaging session for each volunteer. For the body motion studies, MRI was again acquired only at end-expiration for five body motion poses (shoulder stretch, shoulder twist, lateral bend, side roll, and axial slide). For the respiratory motion studies, an MRI was acquired during free/regular breathing. The magnetic resonance slices were then retrospectively sorted into 14 amplitude-binned respiratory states, end-expiration, end-inspiration, six intermediary states during inspiration, and six during expiration using the recorded Navigator signal. XCAT phantoms were then generated based on these MRI data by interactive alignment of the organ contours of the XCAT with the MRI slices using a graphical user interface. Thus far we have created five body motion and five respiratory motion XCAT phantoms from the MRI acquisitions of six healthy volunteers (three males and three females). Non-rigid motion exhibited by the volunteers was reflected in both respiratory

  9. B-spline algebraic diagrammatic construction: Application to photoionization cross-sections and high-order harmonic generation

    Energy Technology Data Exchange (ETDEWEB)

    Ruberti, M.; Averbukh, V. [Department of Physics, Imperial College London, Prince Consort Road, London SW7 2AZ (United Kingdom); Decleva, P. [Dipartimento di Scienze Chimiche, Universita’ di Trieste, Via Giorgieri 1, I-34127 Trieste (Italy)

    2014-10-28

    We present the first implementation of the ab initio many-body Green's function method, algebraic diagrammatic construction (ADC), in the B-spline single-electron basis. B-spline versions of the first order [ADC(1)] and second order [ADC(2)] schemes for the polarization propagator are developed and applied to the ab initio calculation of static (photoionization cross-sections) and dynamic (high-order harmonic generation spectra) quantities. We show that the cross-section features that pose a challenge for the Gaussian basis calculations, such as Cooper minima and high-energy tails, are found to be reproduced by the B-spline ADC in a very good agreement with the experiment. We also present the first dynamic B-spline ADC results, showing that the effect of the Cooper minimum on the high-order harmonic generation spectrum of Ar is correctly predicted by the time-dependent ADC calculation in the B-spline basis. The present development paves the way for the application of the B-spline ADC to both energy- and time-resolved theoretical studies of many-electron phenomena in atoms, molecules, and clusters.

  10. A cubic B-spline Galerkin approach for the numerical simulation of the GEW equation

    Directory of Open Access Journals (Sweden)

    S. Battal Gazi Karakoç

    2016-02-01

    Full Text Available The generalized equal width (GEW wave equation is solved numerically by using lumped Galerkin approach with cubic B-spline functions. The proposed numerical scheme is tested by applying two test problems including single solitary wave and interaction of two solitary waves. In order to determine the performance of the algorithm, the error norms L2 and L∞ and the invariants I1, I2 and I3 are calculated. For the linear stability analysis of the numerical algorithm, von Neumann approach is used. As a result, the obtained findings show that the presented numerical scheme is preferable to some recent numerical methods.  

  11. RANCANG BANGUN PROGRAM PENGEDITAN KURVA B-SPLINE MULTIRESOLUSI BERBASIS WAVELETS

    Directory of Open Access Journals (Sweden)

    Nanik Suciati

    2002-07-01

    Full Text Available Penelitian ini menyusun representasi multiresolusi untuk kurva B-spline kubik yang menginterpolasi titik-titik ujung dengan basis wavelets. Representasi multiresolusi ini digunakan untuk mendukung beberapa tipe pengeditan kurva, yaitu penghalusan kurva dengan tingkat resolusi kontinyu untuk menghilangkan detail-detail kurva yang tidak diinginkan, pengeditan bentuk keseluruhan kurva dengan tetap mempertahankan detaildetailnya, perubahan detail-detail kurva tanpa mempengaruhi bentuk keseluruhannya, dan pengeditan satubagian tertentu dari kurva melalui manipulasi secara langsung terhadap titik-titik kontrolnya. Untuk menguji kemampuan representasi multiresolusi dalam mendukung empat tipe manipulasi kurva tersebut, disusun program pengeditan kurva dengan menggunakan bahasa pemrograman Visual C++ pada komputer Pentium 133 MHz, memori 16 Mbyte, sistem operasi Windows 95, lingkungan pengembangan Microsoft DevelopmentStudio 97 dan pustaka Microsoft Foundation Class. Dari hasil uji coba program diketahui bahwa representasi multiresolusi memberikan dukungan yang sangat baik terhadap tipe-tipe pengeditan seperti yang disebutkan di atas. Representasi multiresolusi tidak membutuhkan memori penyimpan ekstra selain dari yang digunakan untuk menyimpan titik kontrol. Dari hasil uji coba program menggunakan ratusan titik kontrol, algoritma berjalan cukup cepat dan memadai berkaitan dengan tuntutan komunikasi interaktif antara user dan program.Kata kunci: B-Spline, Wavelet, Multiresolusi

  12. Fuzzy B-spline optimization for urban slum three-dimensional reconstruction using ENVISAT satellite data

    Science.gov (United States)

    Marghany, Maged

    2014-06-01

    A critical challenges in urban aeras is slums. In fact, they are considered a source of crime and disease due to poor-quality housing, unsanitary conditions, poor infrastructures and occupancy security. The poor in the dense urban slums are the most vulnerable to infection due to (i) inadequate and restricted access to safety, drinking water and sufficient quantities of water for personal hygiene; (ii) the lack of removal and treatment of excreta; and (iii) the lack of removal of solid waste. This study aims to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed countries such as Egypt. The main objective of this work is to utilize some 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that the fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate between them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slum. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that the fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data.

  13. Fuzzy B-spline optimization for urban slum three-dimensional reconstruction using ENVISAT satellite data

    International Nuclear Information System (INIS)

    Marghany, Maged

    2014-01-01

    A critical challenges in urban aeras is slums. In fact, they are considered a source of crime and disease due to poor-quality housing, unsanitary conditions, poor infrastructures and occupancy security. The poor in the dense urban slums are the most vulnerable to infection due to (i) inadequate and restricted access to safety, drinking water and sufficient quantities of water for personal hygiene; (ii) the lack of removal and treatment of excreta; and (iii) the lack of removal of solid waste. This study aims to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed countries such as Egypt. The main objective of this work is to utilize some 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that the fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate between them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slum. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that the fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data

  14. An evaluation of prefiltered B-spline reconstruction for quasi-interpolation on the Body-Centered Cubic lattice.

    Science.gov (United States)

    Csébfalvi, Balázs

    2010-01-01

    In this paper, we demonstrate that quasi-interpolation of orders two and four can be efficiently implemented on the Body-Centered Cubic (BCC) lattice by using tensor-product B-splines combined with appropriate discrete prefilters. Unlike the nonseparable box-spline reconstruction previously proposed for the BCC lattice, the prefiltered B-spline reconstruction can utilize the fast trilinear texture-fetching capability of the recent graphics cards. Therefore, it can be applied for rendering BCC-sampled volumetric data interactively. Furthermore, we show that a separable B-spline filter can suppress the postaliasing effect much more isotropically than a nonseparable box-spline filter of the same approximation power. Although prefilters that make the B-splines interpolating on the BCC lattice do not exist, we demonstrate that quasi-interpolating prefiltered linear and cubic B-spline reconstructions can still provide similar or higher image quality than the interpolating linear box-spline and prefiltered quintic box-spline reconstructions, respectively.

  15. Correlation studies for B-spline modeled F2 Chapman parameters obtained from FORMOSAT-3/COSMIC data

    Directory of Open Access Journals (Sweden)

    M. Limberger

    2014-12-01

    Full Text Available The determination of ionospheric key quantities such as the maximum electron density of the F2 layer NmF2, the corresponding F2 peak height hmF2 and the F2 scale height HF2 are of high relevance in 4-D ionosphere modeling to provide information on the vertical structure of the electron density (Ne. The Ne distribution with respect to height can, for instance, be modeled by the commonly accepted F2 Chapman layer. An adequate and observation driven description of the vertical Ne variation can be obtained from electron density profiles (EDPs derived by ionospheric radio occultation measurements between GPS and low Earth orbiter (LEO satellites. For these purposes, the six FORMOSAT-3/COSMIC (F3/C satellites provide an excellent opportunity to collect EDPs that cover most of the ionospheric region, in particular the F2 layer. For the contents of this paper, F3/C EDPs have been exploited to determine NmF2, hmF2 and HF2 within a regional modeling approach. As mathematical base functions, endpoint-interpolating polynomial B-splines are considered to model the key parameters with respect to longitude, latitude and time. The description of deterministic processes and the verification of this modeling approach have been published previously in Limberger et al. (2013, whereas this paper should be considered as an extension dealing with related correlation studies, a topic to which less attention has been paid in the literature. Relations between the B-spline series coefficients regarding specific key parameters as well as dependencies between the three F2 Chapman key parameters are in the main focus. Dependencies are interpreted from the post-derived correlation matrices as a result of (1 a simulated scenario without data gaps by taking dense, homogenously distributed profiles into account and (2 two real data scenarios on 1 July 2008 and 1 July 2012 including sparsely, inhomogeneously distributed F3/C EDPs. Moderate correlations between hmF2 and HF2 as

  16. Numerical solution of Riccati equation using the cubic B-spline scaling functions and Chebyshev cardinal functions

    Science.gov (United States)

    Lakestani, Mehrdad; Dehghan, Mehdi

    2010-05-01

    Two numerical techniques are presented for solving the solution of Riccati differential equation. These methods use the cubic B-spline scaling functions and Chebyshev cardinal functions. The methods consist of expanding the required approximate solution as the elements of cubic B-spline scaling function or Chebyshev cardinal functions. Using the operational matrix of derivative, we reduce the problem to a set of algebraic equations. Some numerical examples are included to demonstrate the validity and applicability of the new techniques. The methods are easy to implement and produce very accurate results.

  17. Efficient nonrigid registration using ranked order statistics

    DEFF Research Database (Denmark)

    Tennakoon, Ruwan B.; Bab-Hadiashar, Alireza; de Bruijne, Marleen

    2013-01-01

    of research. In this paper we propose a fast and accurate non-rigid registration method for intra-modality volumetric images. Our approach exploits the information provided by an order statistics based segmentation method, to find the important regions for registration and use an appropriate sampling scheme...

  18. Nonrigid free-form registration using landmark-based statistical deformation models

    Science.gov (United States)

    Pszczolkowski, Stefan; Pizarro, Luis; Guerrero, Ricardo; Rueckert, Daniel

    2012-02-01

    In this paper, we propose an image registration algorithm named statistically-based FFD registration (SFFD). This registration method is a modification of a well-known free-form deformations (FFD) approach. Our framework dramatically reduces the number of parameters to optimise and only needs to perform a single-resolution optimisation to account for coarse and fine local displacements, in contrast to the multi-resolution strategy employed by the FFD-based registration. The proposed registration uses statistical deformation models (SDMs) as a priori knowledge to guide the alignment of a new subject to a common reference template. These SDMs account for the anatomical mean and variability across a population of subjects. We also propose that available anatomical landmark information can be encoded within the proposed SDM framework to enforce the alignment of certain anatomical structures. We present results in terms of fiducial localisation error, which illustrate the ability of the SDMs to encode landmark position information. We also show that our statistical registration algorithm can provide registration results comparable to the standard FFD-based approach at a much lower computational cost.

  19. Optimal Design of Grooved Cam Profile Using Non-uniform Rational B-splines

    Directory of Open Access Journals (Sweden)

    Xuan Guantao

    2017-01-01

    Full Text Available In order to reduce the fatigue damage in grooved cam mechanisms, grooved cam profile was reconstructed with non-uniform rational B-splines (NURBS. Considering joint friction, dynamic model of grooved cam mechanisms was established and the contact stress between grooved cam and follower was calculated using Hertz contact theory. Taking the minimum contact stress and the minimum acceleration as optimal objectives, integrated design model for respective kinematic and dynamic design approaches was set up. The integrated design mode was optimized to search Pareto-optimal solution by an improved artificial fish swarm algorithm, and optimized NURBS profile for grooved cam was acquired. The results show NURBS profile has better kinematic and dynamic performances. The impacts on grooved cam mechanism are reduced and wear characteristics are improved.

  20. A numerical solution of the linear Boltzmann equation using cubic B-splines.

    Science.gov (United States)

    Khurana, Saheba; Thachuk, Mark

    2012-03-07

    A numerical method using cubic B-splines is presented for solving the linear Boltzmann equation. The collision kernel for the system is chosen as the Wigner-Wilkins kernel. A total of three different representations for the distribution function are presented. Eigenvalues and eigenfunctions of the collision matrix are obtained for various mass ratios and compared with known values. Distribution functions, along with first and second moments, are evaluated for different mass and temperature ratios. Overall it is shown that the method is accurate and well behaved. In particular, moments can be predicted with very few points if the representation is chosen well. This method produces sparse matrices, can be easily generalized to higher dimensions, and can be cast into efficient parallel algorithms. © 2012 American Institute of Physics

  1. Numerical Evaluation of Arbitrary Singular Domain Integrals Using Third-Degree B-Spline Basis Functions

    Directory of Open Access Journals (Sweden)

    Jin-Xiu Hu

    2014-01-01

    Full Text Available A new approach is presented for the numerical evaluation of arbitrary singular domain integrals. In this method, singular domain integrals are transformed into a boundary integral and a radial integral which contains singularities by using the radial integration method. The analytical elimination of singularities condensed in the radial integral formulas can be accomplished by expressing the nonsingular part of the integration kernels as a series of cubic B-spline basis functions of the distance r and using the intrinsic features of the radial integral. In the proposed method, singularities involved in the domain integrals are explicitly transformed to the boundary integrals, so no singularities exist at internal points. A few numerical examples are provided to verify the correctness and robustness of the presented method.

  2. Finite nucleus Dirac mean field theory and random phase approximation using finite B splines

    International Nuclear Information System (INIS)

    McNeil, J.A.; Furnstahl, R.J.; Rost, E.; Shepard, J.R.; Department of Physics, University of Maryland, College Park, Maryland 20742; Department of Physics, University of Colorado, Boulder, Colorado 80309)

    1989-01-01

    We calculate the finite nucleus Dirac mean field spectrum in a Galerkin approach using finite basis splines. We review the method and present results for the relativistic σ-ω model for the closed-shell nuclei 16 O and 40 Ca. We study the convergence of the method as a function of the size of the basis and the closure properties of the spectrum using an energy-weighted dipole sum rule. We apply the method to the Dirac random-phase-approximation response and present results for the isoscalar 1/sup -/ and 3/sup -/ longitudinal form factors of 16 O and 40 Ca. We also use a B-spline spectral representation of the positive-energy projector to evaluate partial energy-weighted sum rules and compare with nonrelativistic sum rule results

  3. Application of SCM with Bayesian B-Spline to Spatio-Temporal Analysis of Hypertension in China.

    Science.gov (United States)

    Ye, Zirong; Xu, Li; Zhou, Zi; Wu, Yafei; Fang, Ya

    2018-01-02

    Most previous research on the disparities of hypertension risk has neither simultaneously explored the spatio-temporal disparities nor considered the spatial information contained in the samples, thus the estimated results may be unreliable. Our study was based on the China Health and Nutrition Survey (CHNS), including residents over 12 years old in seven provinces from 1991 to 2011. Bayesian B-spline was used in the extended shared component model (SCM) for fitting temporal-related variation to explore spatio-temporal distribution in the odds ratio (OR) of hypertension, reveal gender variation, and explore latent risk factors. Our results revealed that the prevalence of hypertension increased from 14.09% in 1991 to 32.37% in 2011, with men experiencing a more obvious change than women. From a spatial perspective, a standardized prevalence ratio (SPR) remaining at a high level was found in Henan and Shandong for both men and women. Meanwhile, before 1997, the temporal distribution of hypertension risk for both men and women remained low. After that, notably since 2004, the OR of hypertension in each province increased to a relatively high level, especially in Northern China. Notably, the OR of hypertension in Shandong and Jiangsu, which was over 1.2, continuously stood out after 2004 for males, while that in Shandong and Guangxi was relatively high for females. The findings suggested that obvious spatial-temporal patterns for hypertension exist in the regions under research and this pattern was quite different between men and women.

  4. Mesh-to-raster region-of-interest-based nonrigid registration of multimodal images.

    Science.gov (United States)

    Tatano, Rosalia; Berkels, Benjamin; Deserno, Thomas M

    2017-10-01

    Region of interest (RoI) alignment in medical images plays a crucial role in diagnostics, procedure planning, treatment, and follow-up. Frequently, a model is represented as triangulated mesh while the patient data is provided from computed axial tomography scanners as pixel or voxel data. Previously, we presented a 2-D method for curve-to-pixel registration. This paper contributes (i) a general mesh-to-raster framework to register RoIs in multimodal images; (ii) a 3-D surface-to-voxel application, and (iii) a comprehensive quantitative evaluation in 2-D using ground truth (GT) provided by the simultaneous truth and performance level estimation (STAPLE) method. The registration is formulated as a minimization problem, where the objective consists of a data term, which involves the signed distance function of the RoI from the reference image and a higher order elastic regularizer for the deformation. The evaluation is based on quantitative light-induced fluoroscopy (QLF) and digital photography (DP) of decalcified teeth. STAPLE is computed on 150 image pairs from 32 subjects, each showing one corresponding tooth in both modalities. The RoI in each image is manually marked by three experts (900 curves in total). In the QLF-DP setting, our approach significantly outperforms the mutual information-based registration algorithm implemented with the Insight Segmentation and Registration Toolkit and Elastix.

  5. Motion tracking in the liver: Validation of a method based on 4D ultrasound using a nonrigid registration technique

    Energy Technology Data Exchange (ETDEWEB)

    Vijayan, Sinara, E-mail: sinara.vijayan@ntnu.no [Norwegian University of Science and Technology, 7491 Trondheim (Norway); Klein, Stefan [Norwegian University of Science and Technology, 7491 Trondheim, Norway and Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC, 3000 CA Rotterdam (Netherlands); Hofstad, Erlend Fagertun; Langø, Thomas [SINTEF, Department Medical Technology, 7465 Trondheim (Norway); Lindseth, Frank [Norwegian University of Science and Technology, 7491 Trondheim, Norway and SINTEF, Department Medical Technology, 7465 Trondheim (Norway); Ystgaard, Brynjulf [Department of Surgery, St. Olavs Hospital, 7030 Trondheim (Norway)

    2014-08-15

    Purpose: Treatments like radiotherapy and focused ultrasound in the abdomen require accurate motion tracking, in order to optimize dosage delivery to the target and minimize damage to critical structures and healthy tissues around the target. 4D ultrasound is a promising modality for motion tracking during such treatments. In this study, the authors evaluate the accuracy of motion tracking in the liver based on deformable registration of 4D ultrasound images. Methods: The offline analysis was performed using a nonrigid registration algorithm that was specifically designed for motion estimation from dynamic imaging data. The method registers the entire 4D image data sequence in a groupwise optimization fashion, thus avoiding a bias toward a specifically chosen reference time point. Three healthy volunteers were scanned over several breathing cycles (12 s) from three different positions and angles on the abdomen; a total of nine 4D scans for the three volunteers. Well-defined anatomic landmarks were manually annotated in all 96 time frames for assessment of the automatic algorithm. The error of the automatic motion estimation method was compared with interobserver variability. The authors also performed experiments to investigate the influence of parameters defining the deformation field flexibility and evaluated how well the method performed with a lower temporal resolution in order to establish the minimum frame rate required for accurate motion estimation. Results: The registration method estimated liver motion with an error of 1 mm (75% percentile over all datasets), which was lower than the interobserver variability of 1.4 mm. The results were only slightly dependent on the degrees of freedom of the deformation model. The registration error increased to 2.8 mm with an eight times lower temporal resolution. Conclusions: The authors conclude that the methodology was able to accurately track the motion of the liver in the 4D ultrasound data. The authors believe

  6. Correction of MR image distortions induced by metallic objects using a 3D cubic B-spline basis set: application to stereotactic surgical planning.

    Science.gov (United States)

    Skare, S; Andersson, J L R

    2005-07-01

    Metallic implants in MRI cause spin-echo (SE) images to be distorted in the slice and frequency-encoding directions. Chang and Fitzpatrick (IEEE Trans Med Imaging 1992;11:319-329) proposed a distortion correction method (termed the CF method) based on the magnitude images from two SE acquisitions that differ only in the polarity of the frequency-encoding and slice-selection gradients. In the present study we solved some problems with the CF method, primarily by modeling the field inhomogeneities as a single 3D displacement field built by 3D cubic B-splines. The 3D displacement field was applied in the actual distortion direction in the slice/frequency-encoding plane. To account for patient head motion, a 3D rigid body motion correction was also incorporated in the model. Experiments on a phantom containing an aneurysm clip showed that the knot spacing between the B-splines is a very important factor in both the final image quality and the processing speed. Depending on the knot spacing and the image volume size, the number of unknowns range from a few thousands to over 100,000, leading to processing times ranging from minutes to days. Optimal knot spacing, a means of increasing the processing speed, and other parameters are investigated and discussed.

  7. Improving mouse controlling and movement for people with Parkinson's disease and involuntary tremor using adaptive path smoothing technique via B-spline.

    Science.gov (United States)

    Hashem, Seyed Yashar Bani; Zin, Nor Azan Mat; Yatim, Noor Faezah Mohd; Ibrahim, Norlinah Mohamed

    2014-01-01

    Many input devices are available for interacting with computers, but the computer mouse is still the most popular device for interaction. People who suffer from involuntary tremor have difficulty using the mouse in the normal way. The target participants of this research were individuals who suffer from Parkinson's disease. Tremor in limbs makes accurate mouse movements impossible or difficult without any assistive technologies to help. This study explores a new assistive technique-adaptive path smoothing via B-spline (APSS)-to enhance mouse controlling based on user's tremor level and type. APSS uses Mean filtering and B-spline to provide a smoothed mouse trajectory. Seven participants who have unwanted tremor evaluated APSS. Results show that APSS is very promising and greatly increases their control of the computer mouse. Result of user acceptance test also shows that user perceived APSS as easy to use. They also believe it to be a useful tool and intend to use it once it is available. Future studies could explore the possibility of integrating APSS with one assistive pointing technique, such as the Bubble cursor or the Sticky target technique, to provide an all in one solution for motor disabled users.

  8. An Adaptive B-Spline Method for Low-order Image Reconstruction Problems - Final Report - 09/24/1997 - 09/24/2000

    Energy Technology Data Exchange (ETDEWEB)

    Li, Xin; Miller, Eric L.; Rappaport, Carey; Silevich, Michael

    2000-04-11

    A common problem in signal processing is to estimate the structure of an object from noisy measurements linearly related to the desired image. These problems are broadly known as inverse problems. A key feature which complicates the solution to such problems is their ill-posedness. That is, small perturbations in the data arising e.g. from noise can and do lead to severe, non-physical artifacts in the recovered image. The process of stabilizing these problems is known as regularization of which Tikhonov regularization is one of the most common. While this approach leads to a simple linear least squares problem to solve for generating the reconstruction, it has the unfortunate side effect of producing smooth images thereby obscuring important features such as edges. Therefore, over the past decade there has been much work in the development of edge-preserving regularizers. This technique leads to image estimates in which the important features are retained, but computationally the y require the solution of a nonlinear least squares problem, a daunting task in many practical multi-dimensional applications. In this thesis we explore low-order models for reducing the complexity of the re-construction process. Specifically, B-Splines are used to approximate the object. If a ''proper'' collection B-Splines are chosen that the object can be efficiently represented using a few basis functions, the dimensionality of the underlying problem will be significantly decreased. Consequently, an optimum distribution of splines needs to be determined. Here, an adaptive refining and pruning algorithm is developed to solve the problem. The refining part is based on curvature information, in which the intuition is that a relatively dense set of fine scale basis elements should cluster near regions of high curvature while a spares collection of basis vectors are required to adequately represent the object over spatially smooth areas. The pruning part is a greedy

  9. Evaluation of Two New Smoothing Methods in Equating: The Cubic B-Spline Presmoothing Method and the Direct Presmoothing Method

    Science.gov (United States)

    Cui, Zhongmin; Kolen, Michael J.

    2009-01-01

    This article considers two new smoothing methods in equipercentile equating, the cubic B-spline presmoothing method and the direct presmoothing method. Using a simulation study, these two methods are compared with established methods, the beta-4 method, the polynomial loglinear method, and the cubic spline postsmoothing method, under three sample…

  10. The estimation of time-varying risks in asset pricing modelling using B-Spline method

    Science.gov (United States)

    Nurjannah; Solimun; Rinaldo, Adji

    2017-12-01

    Asset pricing modelling has been extensively studied in the past few decades to explore the risk-return relationship. The asset pricing literature typically assumed a static risk-return relationship. However, several studies found few anomalies in the asset pricing modelling which captured the presence of the risk instability. The dynamic model is proposed to offer a better model. The main problem highlighted in the dynamic model literature is that the set of conditioning information is unobservable and therefore some assumptions have to be made. Hence, the estimation requires additional assumptions about the dynamics of risk. To overcome this problem, the nonparametric estimators can also be used as an alternative for estimating risk. The flexibility of the nonparametric setting avoids the problem of misspecification derived from selecting a functional form. This paper investigates the estimation of time-varying asset pricing model using B-Spline, as one of nonparametric approach. The advantages of spline method is its computational speed and simplicity, as well as the clarity of controlling curvature directly. The three popular asset pricing models will be investigated namely CAPM (Capital Asset Pricing Model), Fama-French 3-factors model and Carhart 4-factors model. The results suggest that the estimated risks are time-varying and not stable overtime which confirms the risk instability anomaly. The results is more pronounced in Carhart’s 4-factors model.

  11. A baseline correction algorithm for Raman spectroscopy by adaptive knots B-spline

    International Nuclear Information System (INIS)

    Wang, Xin; Fan, Xian-guang; Xu, Ying-jie; Wang, Xiu-fen; He, Hao; Zuo, Yong

    2015-01-01

    The Raman spectroscopy technique is a powerful and non-invasive technique for molecular fingerprint detection which has been widely used in many areas, such as food safety, drug safety, and environmental testing. But Raman signals can be easily corrupted by a fluorescent background, therefore we presented a baseline correction algorithm to suppress the fluorescent background in this paper. In this algorithm, the background of the Raman signal was suppressed by fitting a curve called a baseline using a cyclic approximation method. Instead of the traditional polynomial fitting, we used the B-spline as the fitting algorithm due to its advantages of low-order and smoothness, which can avoid under-fitting and over-fitting effectively. In addition, we also presented an automatic adaptive knot generation method to replace traditional uniform knots. This algorithm can obtain the desired performance for most Raman spectra with varying baselines without any user input or preprocessing step. In the simulation, three kinds of fluorescent background lines were introduced to test the effectiveness of the proposed method. We showed that two real Raman spectra (parathion-methyl and colza oil) can be detected and their baselines were also corrected by the proposed method. (paper)

  12. FC LSEI WNNLS, Least-Square Fitting Algorithms Using B Splines

    International Nuclear Information System (INIS)

    Hanson, R.J.; Haskell, K.H.

    1989-01-01

    1 - Description of problem or function: FC allows a user to fit dis- crete data, in a weighted least-squares sense, using piece-wise polynomial functions represented by B-Splines on a given set of knots. In addition to the least-squares fitting of the data, equality, inequality, and periodic constraints at a discrete, user-specified set of points can be imposed on the fitted curve or its derivatives. The subprograms LSEI and WNNLS solve the linearly-constrained least-squares problem. LSEI solves the class of problem with general inequality constraints, and, if requested, obtains a covariance matrix of the solution parameters. WNNLS solves the class of problem with non-negativity constraints. It is anticipated that most users will find LSEI suitable for their needs; however, users with inequalities that are single bounds on variables may wish to use WNNLS. 2 - Method of solution: The discrete data are fit by a linear combination of piece-wise polynomial curves which leads to a linear least-squares system of algebraic equations. Additional information is expressed as a discrete set of linear inequality and equality constraints on the fitted curve which leads to a linearly-constrained least-squares system of algebraic equations. The solution of this system is the main computational problem solved

  13. A baseline correction algorithm for Raman spectroscopy by adaptive knots B-spline

    Science.gov (United States)

    Wang, Xin; Fan, Xian-guang; Xu, Ying-jie; Wang, Xiu-fen; He, Hao; Zuo, Yong

    2015-11-01

    The Raman spectroscopy technique is a powerful and non-invasive technique for molecular fingerprint detection which has been widely used in many areas, such as food safety, drug safety, and environmental testing. But Raman signals can be easily corrupted by a fluorescent background, therefore we presented a baseline correction algorithm to suppress the fluorescent background in this paper. In this algorithm, the background of the Raman signal was suppressed by fitting a curve called a baseline using a cyclic approximation method. Instead of the traditional polynomial fitting, we used the B-spline as the fitting algorithm due to its advantages of low-order and smoothness, which can avoid under-fitting and over-fitting effectively. In addition, we also presented an automatic adaptive knot generation method to replace traditional uniform knots. This algorithm can obtain the desired performance for most Raman spectra with varying baselines without any user input or preprocessing step. In the simulation, three kinds of fluorescent background lines were introduced to test the effectiveness of the proposed method. We showed that two real Raman spectra (parathion-methyl and colza oil) can be detected and their baselines were also corrected by the proposed method.

  14. An SPM8-Based Approach for Attenuation Correction Combining Segmentation and Nonrigid Template Formation: Application to Simultaneous PET/MR Brain Imaging

    DEFF Research Database (Denmark)

    Izquierdo-Garcia, David; Hansen, Adam E; Förster, Stefan

    2014-01-01

    /MR scanners. METHODS: Coregistered anatomic MR and CT images of 15 glioblastoma subjects were used to generate the templates. The MR images from these subjects were first segmented into 6 tissue classes (gray matter, white matter, cerebrospinal fluid, bone, soft tissue, and air), which were then nonrigidly...... coregistered using a diffeomorphic approach. A similar procedure was used to coregister the anatomic MR data for a new subject to the template. Finally, the CT-like images obtained by applying the inverse transformations were converted to linear attenuation coefficients to be used for AC of PET data....... The method was validated on 16 new subjects with brain tumors (n = 12) or mild cognitive impairment (n = 4) who underwent CT and PET/MR scans. The μ maps and corresponding reconstructed PET images were compared with those obtained using the gold standard CT-based approach and the Dixon-based method available...

  15. Television images identification in the vision system basis on the mathematical apparatus of cubic normalized B-splines

    Directory of Open Access Journals (Sweden)

    Krutov Vladimir

    2017-01-01

    Full Text Available The solution the task of television image identification is used in industry when creating autonomous robots and systems of technical vision. A similar problem also arises in the development of image analysis systems to function under the influence of various interfering factors in complex observation conditions complicated the registration process and existing when priori information is absent, in background noise type. One of the most important operators is the contour selection operator. Methods and algorithms of processing information from image sensors must take into account the different character of noise associated with images and signals registration. The solution of the task of isolating contours, and in fact of digital differentiation of two-dimensional signals registered against a different character of background noise, is far from trivial. This is due to the fact that such task is incorrect. In modern information systems, methods of numerical differentiation or masks are usually used to solve the task of isolating contours. The paper considers a new method of differentiating measurement results against a noise background using the modern mathematical apparatus of cubic smoothing B-splines. The new high-precision method of digital differentiation of signals using splines is proposed for the first time, without using standard numerical differentiation procedures, to calculate the values of the derivatives with high accuracy. In fact, a method has been developed for calculating the image gradient module using spline differentiation. The method, as proved by experimental studies, and computational experiments has higher noise immunity than algorithms based on standard differentiation procedures using masks.

  16. Numerical simulation of two dimensional sine-Gordon solitons using modified cubic B-spline differential quadrature method

    Directory of Open Access Journals (Sweden)

    H. S. Shukla

    2015-01-01

    Full Text Available In this paper, a modified cubic B-spline differential quadrature method (MCB-DQM is employed for the numerical simulation of two-space dimensional nonlinear sine-Gordon equation with appropriate initial and boundary conditions. The modified cubic B-spline works as a basis function in the differential quadrature method to compute the weighting coefficients. Accordingly, two dimensional sine-Gordon equation is transformed into a system of second order ordinary differential equations (ODEs. The resultant system of ODEs is solved by employing an optimal five stage and fourth-order strong stability preserving Runge–Kutta scheme (SSP-RK54. Numerical simulation is discussed for both damped and undamped cases. Computational results are found to be in good agreement with the exact solution and other numerical results available in the literature.

  17. Contour propagation using non-uniform cubic B-splines for lung tumor delineation in 4D-CT.

    Science.gov (United States)

    Liu, Yongchuan; Jin, Renchao; Chen, Mi; Song, Enmin; Xu, Xiangyang; Zhang, Sheng; Hung, Chih-Cheng

    2016-12-01

    Accurate target delineation is a critical step in radiotherapy. In this study, a robust contour propagation method is proposed to help physicians delineate lung tumors in four-dimensional computer tomography (4D-CT) images efficiently and accurately. The proposed method starts with manually delineated contours on the reference phase. Each contour is fitted by a non-uniform cubic B-spline curve, and its deformation on the target phase is achieved by moving its control vertexes such that the intensity similarity between the two contours is maximized. Since contour is usually the boundary of lesion or tissue which may deform quite differently from the tissues outside the boundary, the proposed method treats each contour as a deformable entity, a non-uniform cubic B-spline curve, and focuses on the registration of contour entity instead of the entire image to avoid the deformation of contour to be smoothed by its surrounding tissues, meanwhile to greatly reduce the time consumption while keeping the accuracy of the contour propagation. Eighteen 4D-CT cases with 444 gross tumor volume (GTV) contours manually delineated slice by slice on the maximal inhale and exhale phases are used to verify the proposed method. The Jaccard similarity coefficient (JSC) between the propagated GTV and the manually delineated GTV is 0.885 ± 0.026, and the Hausdorff distance (HD) is [Formula: see text] mm. In addition, the time for propagating GTV to all the phases is 3.67 ± 3.41 minutes. The results are better than fast adaptive stochastic gradient descent (FASGD) B-spline method, 3D+t B-spline method and diffeomorphic Demons method. The proposed method is useful to help physicians delineate target volumes efficiently and accurately.

  18. Investigation of electron and hydrogenic-donor states confined in a permeable spherical box using B-splines

    Directory of Open Access Journals (Sweden)

    T Nikbakht

    2012-12-01

    Full Text Available   Effects of quantum size and potential shape on the spectra of an electron and a hydrogenic-donor at the center of a permeable spherical cavity have been calculated, using linear variational method. B-splines have been used as basis functions. By extensive convergence tests and comparing with other results given in the literature, the validity and efficiency of the method were confirmed.

  19. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data.

    Science.gov (United States)

    Dauguet, Julien; Bock, Davi; Reid, R Clay; Warfield, Simon K

    2007-01-01

    3D reconstruction from serial 2D microscopy images depends on non-linear alignment of serial sections. For some structures, such as the neuronal circuitry of the brain, very large images at very high resolution are necessary to permit reconstruction. These very large images prevent the direct use of classical registration methods. We propose in this work a method to deal with the non-linear alignment of arbitrarily large 2D images using the finite support properties of cubic B-splines. After initial affine alignment, each large image is split into a grid of smaller overlapping sub-images, which are individually registered using cubic B-splines transformations. Inside the overlapping regions between neighboring sub-images, the coefficients of the knots controlling the B-splines deformations are blended, to create a virtual large grid of knots for the whole image. The sub-images are resampled individually, using the new coefficients, and assembled together into a final large aligned image. We evaluated the method on a series of large transmission electron microscopy images and our results indicate significant improvements compared to both manual and affine alignment.

  20. An efficient approach to numerical study of the coupled-BBM system with B-spline collocation method

    Directory of Open Access Journals (Sweden)

    khalid ali

    2016-11-01

    Full Text Available In the present paper, a numerical method is proposed for the numerical solution of a coupled-BBM system with appropriate initial and boundary conditions by using collocation method with cubic trigonometric B-spline on the uniform mesh points. The method is shown to be unconditionally stable using von-Neumann technique. To test accuracy the error norms2L, ?L are computed. Furthermore, interaction of two and three solitary waves are used to discuss the effect of the behavior of the solitary waves after the interaction. These results show that the technique introduced here is easy to apply. We make linearization for the nonlinear term.

  1. Galerkin method for unsplit 3-D Dirac equation using atomically/kinetically balanced B-spline basis

    Energy Technology Data Exchange (ETDEWEB)

    Fillion-Gourdeau, F., E-mail: filliong@CRM.UMontreal.ca [Université du Québec, INRS – Énergie, Matériaux et Télécommunications, Varennes, J3X 1S2 (Canada); Centre de Recherches Mathématiques, Université de Montréal, Montréal, H3T 1J4 (Canada); Lorin, E., E-mail: elorin@math.carleton.ca [School of Mathematics and Statistics, Carleton University, Ottawa, K1S 5B6 (Canada); Centre de Recherches Mathématiques, Université de Montréal, Montréal, H3T 1J4 (Canada); Bandrauk, A.D., E-mail: andre.bandrauk@usherbrooke.ca [Laboratoire de Chimie Théorique, Faculté des Sciences, Université de Sherbrooke, Sherbrooke, J1K 2R1 (Canada); Centre de Recherches Mathématiques, Université de Montréal, Montréal, H3T 1J4 (Canada)

    2016-02-15

    A Galerkin method is developed to solve the time-dependent Dirac equation in prolate spheroidal coordinates for an electron–molecular two-center system. The initial state is evaluated from a variational principle using a kinetic/atomic balanced basis, which allows for an efficient and accurate determination of the Dirac spectrum and eigenfunctions. B-spline basis functions are used to obtain high accuracy. This numerical method is used to compute the energy spectrum of the two-center problem and then the evolution of eigenstate wavefunctions in an external electromagnetic field.

  2. Galerkin method for unsplit 3-D Dirac equation using atomically/kinetically balanced B-spline basis

    International Nuclear Information System (INIS)

    Fillion-Gourdeau, F.; Lorin, E.; Bandrauk, A.D.

    2016-01-01

    A Galerkin method is developed to solve the time-dependent Dirac equation in prolate spheroidal coordinates for an electron–molecular two-center system. The initial state is evaluated from a variational principle using a kinetic/atomic balanced basis, which allows for an efficient and accurate determination of the Dirac spectrum and eigenfunctions. B-spline basis functions are used to obtain high accuracy. This numerical method is used to compute the energy spectrum of the two-center problem and then the evolution of eigenstate wavefunctions in an external electromagnetic field.

  3. Trajectory Space: A Dual Representation for Nonrigid Structure from Motion.

    Science.gov (United States)

    Akhter, Ijaz; Sheikh, Yaser; Khan, Sohaib; Kanade, Takeo

    2011-07-01

    Existing approaches to nonrigid structure from motion assume that the instantaneous 3D shape of a deforming object is a linear combination of basis shapes. These bases are object dependent and therefore have to be estimated anew for each video sequence. In contrast, we propose a dual approach to describe the evolving 3D structure in trajectory space by a linear combination of basis trajectories. We describe the dual relationship between the two approaches, showing that they both have equal power for representing 3D structure. We further show that the temporal smoothness in 3D trajectories alone can be used for recovering nonrigid structure from a moving camera. The principal advantage of expressing deforming 3D structure in trajectory space is that we can define an object independent basis. This results in a significant reduction in unknowns and corresponding stability in estimation. We propose the use of the Discrete Cosine Transform (DCT) as the object independent basis and empirically demonstrate that it approaches Principal Component Analysis (PCA) for natural motions. We report the performance of the proposed method, quantitatively using motion capture data, and qualitatively on several video sequences exhibiting nonrigid motions, including piecewise rigid motion, partially nonrigid motion (such as a facial expressions), and highly nonrigid motion (such as a person walking or dancing).

  4. Dynamic metabolic flux analysis using B-splines to study the effects of temperature shift on CHO cell metabolism

    Directory of Open Access Journals (Sweden)

    Verónica S. Martínez

    2015-12-01

    Full Text Available Metabolic flux analysis (MFA is widely used to estimate intracellular fluxes. Conventional MFA, however, is limited to continuous cultures and the mid-exponential growth phase of batch cultures. Dynamic MFA (DMFA has emerged to characterize time-resolved metabolic fluxes for the entire culture period. Here, the linear DMFA approach was extended using B-spline fitting (B-DMFA to estimate mass balanced fluxes. Smoother fits were achieved using reduced number of knots and parameters. Additionally, computation time was greatly reduced using a new heuristic algorithm for knot placement. B-DMFA revealed that Chinese hamster ovary cells shifted from 37 °C to 32 °C maintained a constant IgG volume-specific productivity, whereas the productivity for the controls peaked during mid-exponential growth phase and declined afterward. The observed 42% increase in product titer at 32 °C was explained by a prolonged cell growth with high cell viability, a larger cell volume and a more stable volume-specific productivity. Keywords: Dynamic, Metabolism, Flux analysis, CHO cells, Temperature shift, B-spline curve fitting

  5. A scalable block-preconditioning strategy for divergence-conforming B-spline discretizations of the Stokes problem

    KAUST Repository

    Cortes, Adriano Mauricio

    2016-10-01

    The recently introduced divergence-conforming B-spline discretizations allow the construction of smooth discrete velocity-pressure pairs for viscous incompressible flows that are at the same time inf−supinf−sup stable and pointwise divergence-free. When applied to the discretized Stokes problem, these spaces generate a symmetric and indefinite saddle-point linear system. The iterative method of choice to solve such system is the Generalized Minimum Residual Method. This method lacks robustness, and one remedy is to use preconditioners. For linear systems of saddle-point type, a large family of preconditioners can be obtained by using a block factorization of the system. In this paper, we show how the nesting of “black-box” solvers and preconditioners can be put together in a block triangular strategy to build a scalable block preconditioner for the Stokes system discretized by divergence-conforming B-splines. Besides the known cavity flow problem, we used for benchmark flows defined on complex geometries: an eccentric annulus and hollow torus of an eccentric annular cross-section.

  6. The modeling of quadratic B-splines surfaces for the tomographic reconstruction in the FCC- type-riser

    International Nuclear Information System (INIS)

    Vasconcelos, Geovane Vitor; Dantas, Carlos Costa; Melo, Silvio de Barros; Pires, Renan Ferraz

    2009-01-01

    The 3D tomography reconstruction has been a profitable alternative in the analysis of the FCC-type- riser (Fluid Catalytic Cracking), for appropriately keeping track of the sectional catalyst concentration distribution in the process of oil refining. The method of tomography reconstruction proposed by M. Azzi and colleagues (1991) uses a relatively small amount of trajectories (from 3 to 5) and projections (from 5 to 7) of gamma rays, a desirable feature in the industrial process tomography. Compared to more popular methods, such as the FBP (Filtered Back Projection), which demands a much higher amount of gamma rays projections, the method by Azzi et al. is more appropriate for the industrial process, where the physical limitations and the cost of the process require more economical arrangements. The use of few projections and trajectories facilitates the diagnosis in the flow dynamical process. This article proposes an improvement in the basis functions introduced by Azzi et al., through the use of quadratic B-splines functions. The use of B-splines functions makes possible a smoother surface reconstruction of the density distribution, since the functions are continuous and smooth. This work describes how the modeling can be done. (author)

  7. GA Based Rational cubic B-Spline Representation for Still Image Interpolation

    Directory of Open Access Journals (Sweden)

    Samreen Abbas

    2016-12-01

    Full Text Available In this paper, an image interpolation scheme is designed for 2D natural images. A local support rational cubic spline with control parameters, as interpolatory function, is being optimized using Genetic Algorithm (GA. GA is applied to determine the appropriate values of control parameter used in the description of rational cubic spline. Three state-of-the-art Image Quality Assessment (IQA models with traditional one are hired for comparison with existing image interpolation schemes and perceptual quality check of resulting images. The results show that the proposed scheme is better than the existing ones in comparison.

  8. Non-rigid consistent registration of 2D image sequences

    International Nuclear Information System (INIS)

    Arganda-Carreras, I; Sorzano, C O S; Marabini, R; Carazo, J M; Thevenaz, P; Munoz-Barrutia, A; Ortiz-de Solorzano, C; Kybic, J

    2010-01-01

    We present a novel algorithm for the registration of 2D image sequences that combines the principles of multiresolution B-spline-based elastic registration and those of bidirectional consistent registration. In our method, consecutive triples of images are iteratively registered to gradually extend the information through the set of images of the entire sequence. The intermediate results are reused for the registration of the following triple. We choose to interpolate the images and model the deformation fields using B-spline multiresolution pyramids. Novel boundary conditions are introduced to better characterize the deformations at the boundaries. In the experimental section, we quantitatively show that our method recovers from barrel/pincushion and fish-eye deformations with subpixel error. Moreover, it is more robust against outliers-occasional strong noise and large rotations-than the state-of-the-art methods. Finally, we show that our method can be used to realign series of histological serial sections, which are often heavily distorted due to folding and tearing of the tissues.

  9. Non-rigid consistent registration of 2D image sequences

    Energy Technology Data Exchange (ETDEWEB)

    Arganda-Carreras, I; Sorzano, C O S; Marabini, R; Carazo, J M [Biocomputing Unit, National Centre for Biotechnology, CSIC, Darwin 3, Universidad Autonoma de Madrid, 28049 Madrid (Spain); Thevenaz, P [Biomedical Imaging Group, Ecole polytechnique federale de Lausanne (EPFL) (Switzerland); Munoz-Barrutia, A; Ortiz-de Solorzano, C [Cancer Imaging Laboratory, Centre for Applied Medical Research, University of Navarra, Pamplona (Spain); Kybic, J, E-mail: iarganda@cnb.csic.e [Center for Machine Perception, Czech Technical University, Prague (Czech Republic)

    2010-10-21

    We present a novel algorithm for the registration of 2D image sequences that combines the principles of multiresolution B-spline-based elastic registration and those of bidirectional consistent registration. In our method, consecutive triples of images are iteratively registered to gradually extend the information through the set of images of the entire sequence. The intermediate results are reused for the registration of the following triple. We choose to interpolate the images and model the deformation fields using B-spline multiresolution pyramids. Novel boundary conditions are introduced to better characterize the deformations at the boundaries. In the experimental section, we quantitatively show that our method recovers from barrel/pincushion and fish-eye deformations with subpixel error. Moreover, it is more robust against outliers-occasional strong noise and large rotations-than the state-of-the-art methods. Finally, we show that our method can be used to realign series of histological serial sections, which are often heavily distorted due to folding and tearing of the tissues.

  10. A modified cubic B-spline differential quadrature method for three-dimensional non-linear diffusion equations

    Science.gov (United States)

    Dahiya, Sumita; Mittal, Ramesh Chandra

    2017-07-01

    This paper employs a differential quadrature scheme for solving non-linear partial differential equations. Differential quadrature method (DQM), along with modified cubic B-spline basis, has been adopted to deal with three-dimensional non-linear Brusselator system, enzyme kinetics of Michaelis-Menten type problem and Burgers' equation. The method has been tested efficiently to three-dimensional equations. Simple algorithm and minimal computational efforts are two of the major achievements of the scheme. Moreover, this methodology produces numerical solutions not only at the knot points but also at every point in the domain under consideration. Stability analysis has been done. The scheme provides convergent approximate solutions and handles different cases and is particularly beneficial to higher dimensional non-linear PDEs with irregularities in initial data or initial-boundary conditions that are discontinuous in nature, because of its capability of damping specious oscillations induced by high frequency components of solutions.

  11. Numerical solutions of magnetohydrodynamic stability of axisymmetric toroidal plasmas using cubic B-spline finite element method

    International Nuclear Information System (INIS)

    Cheng, C.Z.

    1988-12-01

    A nonvariational ideal MHD stability code (NOVA) has been developed. In a general flux coordinate (/psi/, θ, /zeta/) system with an arbitrary Jacobian, the NOVA code employs Fourier expansions in the generalized poloidal angle θ and generalized toroidal angle /zeta/ directions, and cubic-B spline finite elements in the radial /psi/ direction. Extensive comparisons with these variational ideal MHD codes show that the NOVA code converges faster and gives more accurate results. An extended version of NOVA is developed to integrate non-Hermitian eigenmode equations due to energetic particles. The set of non-Hermitian integro-differential eigenmode equations is numerically solved by the NOVA-K code. We have studied the problems of the stabilization of ideal MHD internal kink modes by hot particle pressure and the excitation of ''fishbone'' internal kink modes by resonating with the energetic particle magnetic drift frequency. Comparisons with analytical solutions show that the values of the critical β/sub h/ from the analytical theory can be an order of magnitude different from those computed by the NOVA-K code. 24 refs., 11 figs., 1 tab

  12. Performance evaluation of block-diagonal preconditioners for the divergence-conforming B-spline discretization of the Stokes system

    KAUST Repository

    Côrtes, A.M.A.

    2015-02-20

    The recently introduced divergence-conforming B-spline discretizations allow the construction of smooth discrete velocity–pressure pairs for viscous incompressible flows that are at the same time inf-sup stable and pointwise divergence-free. When applied to discretized Stokes equations, these spaces generate a symmetric and indefinite saddle-point linear system. Krylov subspace methods are usually the most efficient procedures to solve such systems. One of such methods, for symmetric systems, is the Minimum Residual Method (MINRES). However, the efficiency and robustness of Krylov subspace methods is closely tied to appropriate preconditioning strategies. For the discrete Stokes system, in particular, block-diagonal strategies provide efficient preconditioners. In this article, we compare the performance of block-diagonal preconditioners for several block choices. We verify how the eigenvalue clustering promoted by the preconditioning strategies affects MINRES convergence. We also compare the number of iterations and wall-clock timings. We conclude that among the building blocks we tested, the strategy with relaxed inner conjugate gradients preconditioned with incomplete Cholesky provided the best results.

  13. Contour propagation for lung tumor delineation in 4D-CT using tensor-product surface of uniform and non-uniform closed cubic B-splines

    Science.gov (United States)

    Jin, Renchao; Liu, Yongchuan; Chen, Mi; Zhang, Sheng; Song, Enmin

    2018-01-01

    A robust contour propagation method is proposed to help physicians delineate lung tumors on all phase images of four-dimensional computed tomography (4D-CT) by only manually delineating the contours on a reference phase. The proposed method models the trajectory surface swept by a contour in a respiratory cycle as a tensor-product surface of two closed cubic B-spline curves: a non-uniform B-spline curve which models the contour and a uniform B-spline curve which models the trajectory of a point on the contour. The surface is treated as a deformable entity, and is optimized from an initial surface by moving its control vertices such that the sum of the intensity similarities between the sampling points on the manually delineated contour and their corresponding ones on different phases is maximized. The initial surface is constructed by fitting the manually delineated contour on the reference phase with a closed B-spline curve. In this way, the proposed method can focus the registration on the contour instead of the entire image to prevent the deformation of the contour from being smoothed by its surrounding tissues, and greatly reduce the time consumption while keeping the accuracy of the contour propagation as well as the temporal consistency of the estimated respiratory motions across all phases in 4D-CT. Eighteen 4D-CT cases with 235 gross tumor volume (GTV) contours on the maximal inhale phase and 209 GTV contours on the maximal exhale phase are manually delineated slice by slice. The maximal inhale phase is used as the reference phase, which provides the initial contours. On the maximal exhale phase, the Jaccard similarity coefficient between the propagated GTV and the manually delineated GTV is 0.881 +/- 0.026, and the Hausdorff distance is 3.07 +/- 1.08 mm. The time for propagating the GTV to all phases is 5.55 +/- 6.21 min. The results are better than those of the fast adaptive stochastic gradient descent B-spline method, the 3D  +  t B-spline

  14. Validation of nonrigid registration for multi-tracer PET-CT treatment planning in rectal cancer radiotherapy

    Science.gov (United States)

    Slagmolen, Pieter; Roels, Sarah; Loeckx, Dirk; Haustermans, Karin; Maes, Frederik

    2009-02-01

    The goal of radiotherapy is to deliver maximal dose to the tumor and minimal dose to the surrounding tissue. This requires accurate target definition. In sites were the tumor is difficult to see on the CT images, such as for rectal cancer, PET-CT imaging can be used to better define the target. If the information from multiple PETCT images with different tracers needs to be combined, a nonrigid registration is indispensable to compensate for rectal tissue deformations. Such registration is complicated by the presence of different volumes of bowel gas in the images to be registered. In this paper, we evaluate the performance of different nonrigid registration approaches by looking at the overlap of manually delineated rectum contours after registration. Using a B-spline transformation model, the results for two similarity measures, sum of squared differences and mutual information, either calculated over the entire image or on a region of interest are compared. Finally, we also assess the effect of the registration direction. We show that the combination of MI with a region of interest is best able to cope with residual rectal contrast and differences in bowel filling. We also show that for optimal performance the registration direction should be chosen depending on the difference in bowel filling in the images to be registered.

  15. Projection of curves on B-spline surfaces using quadratic reparameterization

    KAUST Repository

    Yang, Yijun

    2010-09-01

    Curves on surfaces play an important role in computer aided geometric design. In this paper, we present a hyperbola approximation method based on the quadratic reparameterization of Bézier surfaces, which generates reasonable low degree curves lying completely on the surfaces by using iso-parameter curves of the reparameterized surfaces. The Hausdorff distance between the projected curve and the original curve is controlled under the user-specified distance tolerance. The projected curve is T-G 1 continuous, where T is the user-specified angle tolerance. Examples are given to show the performance of our algorithm. © 2010 Elsevier Inc. All rights reserved.

  16. A Unified Energy Approach for B-Spline Snake In Medical Image Segmentation

    Directory of Open Access Journals (Sweden)

    Agung Alfiansyah

    2010-08-01

    Full Text Available The parametric snake is one of the preferred approaches in feature extraction from images because of their simplicity and efficiency. However the method has also limitations. In this paper an explicit snake that represented using BSpline applied for image segmentation is considered. In this paper, we identify some of these problems and propose efficient solutions to get around them. The proposed method is inspired by classical snake from Kass with some adaption for parametric curve. The paper also proposes new definitions of energy terms in the model to bring the snake performance more robust and efficient for image segmentation. This energy term unify the edge based and region based energy derived from the image data. The main objective of developed work is to develop an automatic method to segment the anatomical organs from medical images which is very hard and tedious to be performed manually. After this segmentation, the anatomical object can be further measured and analyzed to diagnose the anomaly in that organ. The results have shown that the proposed method has been proven qualitatively successful in segmenting different types of medical images.

  17. Pre-evaluation and interactive editing of B-spline and GERBS curves and surfaces

    Science.gov (United States)

    Laksâ, Arne

    2017-12-01

    Interactive computer based geometry editing is very useful for designers and artists. Our goal has been to develop useful tools for geometry editing in a way that increases the ability for creative design. When we interactively editing geometry, we want to see the change happening gradually and smoothly on the screen. Pre-evaluation is a tool for increasing the speed of the graphics when doing interactive affine operation on control points and control surfaces. It is then possible to add details on surfaces, and change shape in a smooth and continuous way. We use pre-evaluation on basis functions, on blending functions and on local surfaces. Pre-evaluation can be made hierarchi-cally and is thus useful for local refinements. Sampling and plotting of curves, surfaces and volumes can today be handled by the GPU and it is therefore important to have a structured organization and updating system to be able to make interactive editing as smooth and user friendly as possible. In the following, we will show a structure for pre-evaluation and an optimal organisation of the computation and we will show the effect of implementing both of these techniques.

  18. Genetic evaluation and selection response for growth in meat-type quail through random regression models using B-spline functions and Legendre polynomials.

    Science.gov (United States)

    Mota, L F M; Martins, P G M A; Littiere, T O; Abreu, L R A; Silva, M A; Bonafé, C M

    2018-04-01

    The objective was to estimate (co)variance functions using random regression models (RRM) with Legendre polynomials, B-spline function and multi-trait models aimed at evaluating genetic parameters of growth traits in meat-type quail. A database containing the complete pedigree information of 7000 meat-type quail was utilized. The models included the fixed effects of contemporary group and generation. Direct additive genetic and permanent environmental effects, considered as random, were modeled using B-spline functions considering quadratic and cubic polynomials for each individual segment, and Legendre polynomials for age. Residual variances were grouped in four age classes. Direct additive genetic and permanent environmental effects were modeled using 2 to 4 segments and were modeled by Legendre polynomial with orders of fit ranging from 2 to 4. The model with quadratic B-spline adjustment, using four segments for direct additive genetic and permanent environmental effects, was the most appropriate and parsimonious to describe the covariance structure of the data. The RRM using Legendre polynomials presented an underestimation of the residual variance. Lesser heritability estimates were observed for multi-trait models in comparison with RRM for the evaluated ages. In general, the genetic correlations between measures of BW from hatching to 35 days of age decreased as the range between the evaluated ages increased. Genetic trend for BW was positive and significant along the selection generations. The genetic response to selection for BW in the evaluated ages presented greater values for RRM compared with multi-trait models. In summary, RRM using B-spline functions with four residual variance classes and segments were the best fit for genetic evaluation of growth traits in meat-type quail. In conclusion, RRM should be considered in genetic evaluation of breeding programs.

  19. An innovation on high-grade CNC machines tools for B-spline curve method of high-speed interpolation arithmetic

    Science.gov (United States)

    Zhang, Wanjun; Gao, Shanping; Cheng, Xiyan; Zhang, Feng

    2017-04-01

    A novel on high-grade CNC machines tools for B Spline curve method of High-speed interpolation arithmetic is introduced. In the high-grade CNC machines tools CNC system existed the type value points is more trouble, the control precision is not strong and so on, In order to solve this problem. Through specific examples in matlab7.0 simulation result showed that that the interpolation error significantly reduced, the control precision is improved markedly, and satisfy the real-time interpolation of high speed, high accuracy requirements.

  20. Dimensional Metrology of Non-rigid Parts Without Specialized Inspection Fixtures =

    Science.gov (United States)

    Sabri, Vahid

    Quality control is an important factor for manufacturing companies looking to prosper in an era of globalization, market pressures and technological advances. Functionality and product quality cannot be guaranteed without this important aspect. Manufactured parts have deviations from their nominal (CAD) shape caused by the manufacturing process. Thus, geometric inspection is a very important element in the quality control of mechanical parts. We will focus here on the geometric inspection of non-rigid (flexible) parts which are widely used in the aeronautic and automotive industries. Non-rigid parts can have different forms in a free-state condition compared with their nominal models due to residual stress and gravity loads. To solve this problem, dedicated inspection fixtures are generally used in industry to compensate for the displacement of such parts for simulating the use state in order to perform geometric inspections. These fixtures and the installation and inspection processes are expensive and time-consuming. Our aim in this thesis is therefore to develop an inspection method which eliminates the need for specialized fixtures. This is done by acquiring a point cloud from the part in a free-state condition using a contactless measuring device such as optical scanning and comparing it with the CAD model for the deviation identification. Using a non-rigid registration method and finite element analysis, we numerically inspect the profile of a non-rigid part. To do so, a simulated displacement is performed using an improved definition of displacement boundary conditions for simulating unfixed parts. In addition, we propose a numerical method for dimensional metrology of non-rigid parts in a free-state condition based on the arc length measurement by calculating the geodesic distance using the Fast Marching Method (FMM). In this thesis, we apply our developed methods on industrial non-rigid parts with free-form surfaces simulated with different types of

  1. Non-rigid image registration using bone growth model

    DEFF Research Database (Denmark)

    Bro-Nielsen, Morten; Gramkow, Claus; Kreiborg, Sven

    1997-01-01

    Non-rigid registration has traditionally used physical models like elasticity and fluids. These models are very seldom valid models of the difference between the registered images. This paper presents a non-rigid registration algorithm, which uses a model of bone growth as a model of the change b...

  2. Nonrigid registration of volumetric images using ranked order statistics

    DEFF Research Database (Denmark)

    Tennakoon, Ruwan; Bab-Hadiashar, Alireza; Cao, Zhenwei

    2014-01-01

    burden and increase the registration accuracy has become an intensive area of research. In this paper we propose a fast and accurate non-rigid registration method for intra-modality volumetric images. Our approach exploits the information provided by an order statistics based segmentation method, to find......Non-rigid image registration techniques using intensity based similarity measures are widely used in medical imaging applications. Due to high computational complexities of these techniques, particularly for volumetric images, finding appropriate registration methods to both reduce the computation...... the important regions for registration and use an appropriate sampling scheme to target those areas and reduce the registration computation time. A unique advantage of the proposed method is its ability to identify the point of diminishing returns and stop the registration process. Our experiments...

  3. Optimized imaging using non-rigid registration

    International Nuclear Information System (INIS)

    Berkels, Benjamin; Binev, Peter; Blom, Douglas A.; Dahmen, Wolfgang; Sharpley, Robert C.; Vogt, Thomas

    2014-01-01

    The extraordinary improvements of modern imaging devices offer access to data with unprecedented information content. However, widely used image processing methodologies fall far short of exploiting the full breadth of information offered by numerous types of scanning probe, optical, and electron microscopies. In many applications, it is necessary to keep measurement intensities below a desired threshold. We propose a methodology for extracting an increased level of information by processing a series of data sets suffering, in particular, from high degree of spatial uncertainty caused by complex multiscale motion during the acquisition process. An important role is played by a non-rigid pixel-wise registration method that can cope with low signal-to-noise ratios. This is accompanied by formulating objective quality measures which replace human intervention and visual inspection in the processing chain. Scanning transmission electron microscopy of siliceous zeolite material exhibits the above-mentioned obstructions and therefore serves as orientation and a test of our procedures. - Highlights: • Developed a new process for extracting more information from a series of STEM images. • An objective non-rigid registration process copes with distortions. • Images of zeolite Y show retrieval of all information available from the data set. • Quantitative measures of registration quality were implemented. • Applicable to any serially acquired data, e.g. STM, AFM, STXM, etc

  4. Accurate one-centre method for hydrogen molecular ion calculation using B-spline-type basis sets in strong magnetic fields

    International Nuclear Information System (INIS)

    Zhang Yuexia; Liu Qiang; Shi Tingyun

    2012-01-01

    An accurate one-centre method is here applied to the calculation of the equilibrium distances and the energies for the hydrogen molecular ion in magnetic fields ranging from 10 9 G to 4.414 × 10 13 G. Both the radial and angular wavefunctions were expanded in terms of optimization B-splines. The slow convergence problem in the general one-centre method and singularities at the nuclear positions of the H + 2 were solved well. The accuracy of the one-centre method has been improved in this way. We compared our results with those generated by high-precision methods from published studies. Equilibrium distances of the 1σ g,u , 1π g,u , 1δ g,u and 2σ g states of the H + 2 in strong magnetic fields were found to be accurate to three to four significant digits at least up to 2.35 × 10 12 G, even for the antibonding states 1σ u , 1π g and 1δ u , whose equilibrium distances R eq are very large. (paper)

  5. Modeling relationship between mean years of schooling and household expenditure at Central Sulawesi using constrained B-splines (COBS) in quantile regression

    Science.gov (United States)

    Hudoyo, Luhur Partomo; Andriyana, Yudhie; Handoko, Budhi

    2017-03-01

    Quantile regression illustrates the distribution of conditional variable responses to various quantile desired values. Each quantile characterizes a certain point (center or tail) of a conditional distribution. This analysis is very useful for asymmetric conditional distribution, e.g. solid at the tail of the distribution, the truncated distribution and existence of outliers. One approach nonparametric method of predicting the conditional quantile objective function is Constrained B-Splines (COBS). COBS is a smoothing technique to accommodate the addition of constraints such as monotonicity, convexity and periodicity. In this study, we will change the minimum conditional quantile objective function in COBS into a linear programming problem. Linear programming problem is defined as the problem of minimizing and maximizing a linear function subject to linear constraints. The constraints may be equalities or inequalities. This research will discuss the relationship between education (mean years of schooling) and economic (household expenditure) levels at Central Sulawesi Province in 2014 which household level data provide more systematic evidence on positive relationship. So monotonicity (increasing) constraints will be used in COBS quantile regression model.

  6. Correction for non-rigid movement artefacts in calcium imaging using local-global optical flow and PCA-based templates

    DEFF Research Database (Denmark)

    Brazhe, A.; Fordsmann, J.; Lauritzen, M.

    2017-01-01

    and can be non-uniform across image; (2) due to fluorescence intensity changes single template image may not be optimal for a subset of the movie frames. Methods: We address the first problem by using either a combined local/global algorithm of optical flow estimation or an original algorithm based...... a set of template images, obtained from clusters of image frames in low-dimensional PCA-based space. To allow for efficient storage of the estimated image warps, they can be represented as low-pass DCT coefficients or by other dictionary-based methods. Conclusions: The proposed pipeline for motion...... on calculation of optical flow in image patches with global regularization. Both algorithms estimate smooth optical flow fields between a current image and a template image and allow for correction of large-scale displacements by employing a multiscale pyramidal approach. The second problem is solved by using...

  7. Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model.

    Science.gov (United States)

    Sorokin, Dmitry V; Peterlik, Igor; Tektonidis, Marco; Rohr, Karl; Matula, Pavel

    2018-01-01

    The analysis of the pure motion of subnuclear structures without influence of the cell nucleus motion and deformation is essential in live cell imaging. In this paper, we propose a 2-D contour-based image registration approach for compensation of nucleus motion and deformation in fluorescence microscopy time-lapse sequences. The proposed approach extends our previous approach, which uses a static elasticity model to register cell images. Compared with that scheme, the new approach employs a dynamic elasticity model for the forward simulation of nucleus motion and deformation based on the motion of its contours. The contour matching process is embedded as a constraint into the system of equations describing the elastic behavior of the nucleus. This results in better performance in terms of the registration accuracy. Our approach was successfully applied to real live cell microscopy image sequences of different types of cells including image data that was specifically designed and acquired for evaluation of cell image registration methods. An experimental comparison with the existing contour-based registration methods and an intensity-based registration method has been performed. We also studied the dependence of the results on the choice of method parameters.

  8. Experiment and numerical simulation on the characteristics of fluid–structure interactions of non-rigid airships

    Directory of Open Access Journals (Sweden)

    Xiaocui Wu

    2015-11-01

    Full Text Available Fluid–structure interaction is an important issue for non-rigid airships with inflated envelopes. In this study, a wind tunnel test is conducted, and a loosely coupled procedure is correspondingly established for numerical simulation based on computational fluid dynamics and nonlinear finite element analysis methods. The typical results of the numerical simulation and wind tunnel experiment, including the overall lift and deformation, are in good agreement with each other. The results obtained indicate that the effect of fluid–structure interaction is noticeable and should be considered for non-rigid airships. Flow-induced deformation can further intensify the upward lift force and pitching moment, which can lead to a large deformation. Under a wind speed of 15 m/s, the lift force of the non-rigid model is increased to approximately 60% compared with that of the rigid model under a high angle of attack.

  9. Galileo Redux or, How Do Nonrigid, Extended Bodies Fall?

    Science.gov (United States)

    Newburgh, Ronald; Andes, George M.

    1995-01-01

    Presents a model for the Slinky that allows for calculations that agree with observed behavior and predictions that suggest further experimentation. Offers an opportunity for introducing nonrigid bodies within the Galilean framework. (JRH)

  10. A non-rigid registration method for mouse whole body skeleton registration

    Science.gov (United States)

    Xiao, Di; Zahra, David; Bourgeat, Pierrick; Berghofer, Paula; Acosta Tamayo, Oscar; Wimberley, Catriona; Gregoire, Marie Claude; Salvado, Olivier

    2010-03-01

    Micro-CT/PET imaging scanner provides a powerful tool to study tumor in small rodents in response to therapy. Accurate image registration is a necessary step to quantify the characteristics of images acquired in longitudinal studies. Small animal registration is challenging because of the very deformable body of the animal often resulting in different postures despite physical restraints. In this paper, we propose a non-rigid registration approach for the automatic registration of mouse whole body skeletons, which is based on our improved 3D shape context non-rigid registration method. The whole body skeleton registration approach has been tested on 21 pairs of mouse CT images with variations of individuals and time-instances. The experimental results demonstrated the stability and accuracy of the proposed method for automatic mouse whole body skeleton registration.

  11. Nonrigid Registration of Monomodal MRI Using Linear Viscoelastic Model

    Directory of Open Access Journals (Sweden)

    Jian Yang

    2014-01-01

    Full Text Available This paper describes a method for nonrigid registration of monomodal MRI based on physical laws. The proposed method assumes that the properties of image deformations are like those of viscoelastic matter, which exhibits the properties of both an elastic solid and a viscous fluid. Therefore, the deformation fields of the deformed image are constrained by both sets of properties. After global registration, the local shape variations are assumed to have the properties of the Maxwell model of linear viscoelasticity, and the deformation fields are constrained by the corresponding partial differential equations. To speed up the registration, an adaptive force is introduced according to the maximum displacement of each iteration. Both synthetic datasets and real datasets are used to evaluate the proposed method. We compare the results of the linear viscoelastic model with those of the fluid model on the basis of both the standard and adaptive forces. The results demonstrate that the adaptive force increases in both models and that the linear viscoelastic model improves the registration accuracy.

  12. Non-rigid 3D shape classification using Bag-of-Feature techniques

    OpenAIRE

    Tabia, Hedi; Colot, Olivier; Daoudi, Mohamed; Vandeborre, Jean-Philippe

    2011-01-01

    International audience; In this paper, we present a new method for 3D-shape categorization using Bag-of-Feature techniques (BoF). This method is based on vector quantization of invariant descriptors of 3D-object patches. We analyze the performance of two well-known classifiers: the Naïve Bayes and the SVM. The results show the effectiveness of our approach and prove that the method is robust to non-rigid and deformable shapes, in which the class of transformations may be very wide due to the ...

  13. Free Form Deformation-Based Image Registration Improves Accuracy of Traction Force Microscopy.

    Directory of Open Access Journals (Sweden)

    Alvaro Jorge-Peñas

    Full Text Available Traction Force Microscopy (TFM is a widespread method used to recover cellular tractions from the deformation that they cause in their surrounding substrate. Particle Image Velocimetry (PIV is commonly used to quantify the substrate's deformations, due to its simplicity and efficiency. However, PIV relies on a block-matching scheme that easily underestimates the deformations. This is especially relevant in the case of large, locally non-uniform deformations as those usually found in the vicinity of a cell's adhesions to the substrate. To overcome these limitations, we formulate the calculation of the deformation of the substrate in TFM as a non-rigid image registration process that warps the image of the unstressed material to match the image of the stressed one. In particular, we propose to use a B-spline -based Free Form Deformation (FFD algorithm that uses a connected deformable mesh to model a wide range of flexible deformations caused by cellular tractions. Our FFD approach is validated in 3D fields using synthetic (simulated data as well as with experimental data obtained using isolated endothelial cells lying on a deformable, polyacrylamide substrate. Our results show that FFD outperforms PIV providing a deformation field that allows a better recovery of the magnitude and orientation of tractions. Together, these results demonstrate the added value of the FFD algorithm for improving the accuracy of traction recovery.

  14. Nonrigid iterative closest points for registration of 3D biomedical surfaces

    Science.gov (United States)

    Liang, Luming; Wei, Mingqiang; Szymczak, Andrzej; Petrella, Anthony; Xie, Haoran; Qin, Jing; Wang, Jun; Wang, Fu Lee

    2018-01-01

    Advanced 3D optical and laser scanners bring new challenges to computer graphics. We present a novel nonrigid surface registration algorithm based on Iterative Closest Point (ICP) method with multiple correspondences. Our method, called the Nonrigid Iterative Closest Points (NICPs), can be applied to surfaces of arbitrary topology. It does not impose any restrictions on the deformation, e.g. rigidity or articulation. Finally, it does not require parametrization of input meshes. Our method is based on an objective function that combines distance and regularization terms. Unlike the standard ICP, the distance term is determined based on multiple two-way correspondences rather than single one-way correspondences between surfaces. A Laplacian-based regularization term is proposed to take full advantage of multiple two-way correspondences. This term regularizes the surface movement by enforcing vertices to move coherently with their 1-ring neighbors. The proposed method achieves good performances when no global pose differences or significant amount of bending exists in the models, for example, families of similar shapes, like human femur and vertebrae models.

  15. Constrained non-rigid registration for whole body image registration: method and validation

    Science.gov (United States)

    Li, Xia; Yankeelov, Thomas E.; Peterson, Todd E.; Gore, John C.; Dawant, Benoit M.

    2007-03-01

    3D intra- and inter-subject registration of image volumes is important for tasks that include measurements and quantification of temporal/longitudinal changes, atlas-based segmentation, deriving population averages, or voxel and tensor-based morphometry. A number of methods have been proposed to tackle this problem but few of them have focused on the problem of registering whole body image volumes acquired either from humans or small animals. These image volumes typically contain a large number of articulated structures, which makes registration more difficult than the registration of head images, to which the vast majority of registration algorithms have been applied. To solve this problem, we have previously proposed an approach, which initializes an intensity-based non-rigid registration algorithm with a point based registration technique [1, 2]. In this paper, we introduce new constraints into our non-rigid registration algorithm to prevent the bones from being deformed inaccurately. Results we have obtained show that the new constrained algorithm leads to better registration results than the previous one.

  16. Estimación de la estructura a plazos de las tasas de interés en Colombia por medio del método de funciones B-spline cúbicas.

    Directory of Open Access Journals (Sweden)

    Diego Mauricio Vasquez E.

    2010-05-01

    Full Text Available En este documento se presenta la descripción y los resultados de la estimación de la estructura a plazos de las tasas de interés en Colombia utilizando el método de funciones B-spline cúbicas. Adicionalmente, se llevan a cabo comparaciones entre los resultados obtenidos a través de esta metodología y los presentados por Arango, Melo y Vásquez (2002 respecto a los métodos de Nelson y Siegel, y de la Bolsa de Valores de Colombia. Se observa que el desempeño del método de estimación de funciones Bspline cúbicas es similar al de Nelson y Siegel, y estos dos métodos superan al de la Bolsa de Valores de Colombia.

  17. Nonlinear mechanics of non-rigid origami: an efficient computational approach.

    Science.gov (United States)

    Liu, K; Paulino, G H

    2017-10-01

    Origami-inspired designs possess attractive applications to science and engineering (e.g. deployable, self-assembling, adaptable systems). The special geometric arrangement of panels and creases gives rise to unique mechanical properties of origami, such as reconfigurability, making origami designs well suited for tunable structures. Although often being ignored, origami structures exhibit additional soft modes beyond rigid folding due to the flexibility of thin sheets that further influence their behaviour. Actual behaviour of origami structures usually involves significant geometric nonlinearity, which amplifies the influence of additional soft modes. To investigate the nonlinear mechanics of origami structures with deformable panels, we present a structural engineering approach for simulating the nonlinear response of non-rigid origami structures. In this paper, we propose a fully nonlinear, displacement-based implicit formulation for performing static/quasi-static analyses of non-rigid origami structures based on 'bar-and-hinge' models. The formulation itself leads to an efficient and robust numerical implementation. Agreement between real models and numerical simulations demonstrates the ability of the proposed approach to capture key features of origami behaviour.

  18. Nonlinear mechanics of non-rigid origami: an efficient computational approach

    Science.gov (United States)

    Liu, K.; Paulino, G. H.

    2017-10-01

    Origami-inspired designs possess attractive applications to science and engineering (e.g. deployable, self-assembling, adaptable systems). The special geometric arrangement of panels and creases gives rise to unique mechanical properties of origami, such as reconfigurability, making origami designs well suited for tunable structures. Although often being ignored, origami structures exhibit additional soft modes beyond rigid folding due to the flexibility of thin sheets that further influence their behaviour. Actual behaviour of origami structures usually involves significant geometric nonlinearity, which amplifies the influence of additional soft modes. To investigate the nonlinear mechanics of origami structures with deformable panels, we present a structural engineering approach for simulating the nonlinear response of non-rigid origami structures. In this paper, we propose a fully nonlinear, displacement-based implicit formulation for performing static/quasi-static analyses of non-rigid origami structures based on `bar-and-hinge' models. The formulation itself leads to an efficient and robust numerical implementation. Agreement between real models and numerical simulations demonstrates the ability of the proposed approach to capture key features of origami behaviour.

  19. Multi-feature statistical nonrigid registration using high-dimensional generalized information measures.

    Science.gov (United States)

    Hamrouni, Sameh; Rougon, Nicolas; Prêteux, Françoise

    2011-01-01

    Nonrigid image registration methods based on the optimization of information-theoretic measures provide versatile solutions for robustly aligning mono-modal data with nonlinear variations and multi-modal data in radiology. Whereas mutual information and its variations arise as a first choice, generalized information measures offer relevant alternatives in specific clinical contexts, Their usual application setting is the alignement of image pairs by statistically matching scalar random variables (generally, greylevel distributions), handled via their probability densities. In this paper, we address the issue of estimating and optimizing generalized information measures over high-dimensional state spaces to derive multi-feature statistical nonrigid registration models. Specifically, we introduce novel consistent and asymptotically unbiaised kappa nearest neighbors estimators of alpha-informations, and study their variational optimization over finite and infinite dimensional smooth transform spaces. The resulting theoretical framework provides a well-posed and computationally efficient alternative to entropic graph techniques. Its performances are assessed on two cardiological applications: measuring myocardial deformations in tagged MRI, and compensating cardio-thoracic motions in perfusion MRI.

  20. Nonrigid motion compensation in compressed sensing reconstruction of cardiac cine MRI.

    Science.gov (United States)

    Tolouee, Azar; Alirezaie, Javad; Babyn, Paul

    2018-02-01

    In this work, a robust nonrigid motion compensation approach, is applied to the compressed sensing reconstruction of dynamic cardiac cine MRI sequences. Respiratory and cardiac motion separation coupled with a registration algorithm is used to provide accurate reconstruction of dynamic cardiac images. The proposed scheme employs a variable splitting based optimization strategy to enable joint motion estimation along with reconstruction. We define the recovery as an energy minimization scheme utilizing an objective function that combines data consistency, spatial smoothness, and motion penalties. The validation of the proposed algorithm using numerical phantom and in-vivo cine MRI data demonstrates reconstruction of cardiac MRI data with less spatio-temporal blurring and motion artifacts from extensively under-sampled data. The proposed method is observed to provide improved reconstructions over state-of-the-art motion compensation schemes. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. Non-Rigid Object Contour Tracking via a Novel Supervised Level Set Model.

    Science.gov (United States)

    Sun, Xin; Yao, Hongxun; Zhang, Shengping; Li, Dong

    2015-11-01

    We present a novel approach to non-rigid objects contour tracking in this paper based on a supervised level set model (SLSM). In contrast to most existing trackers that use bounding box to specify the tracked target, the proposed method extracts the accurate contours of the target as tracking output, which achieves better description of the non-rigid objects while reduces background pollution to the target model. Moreover, conventional level set models only emphasize the regional intensity consistency and consider no priors. Differently, the curve evolution of the proposed SLSM is object-oriented and supervised by the specific knowledge of the targets we want to track. Therefore, the SLSM can ensure a more accurate convergence to the exact targets in tracking applications. In particular, we firstly construct the appearance model for the target in an online boosting manner due to its strong discriminative power between the object and the background. Then, the learnt target model is incorporated to model the probabilities of the level set contour by a Bayesian manner, leading the curve converge to the candidate region with maximum likelihood of being the target. Finally, the accurate target region qualifies the samples fed to the boosting procedure as well as the target model prepared for the next time step. We firstly describe the proposed mechanism of two-phase SLSM for single target tracking, then give its generalized multi-phase version for dealing with multi-target tracking cases. Positive decrease rate is used to adjust the learning pace over time, enabling tracking to continue under partial and total occlusion. Experimental results on a number of challenging sequences validate the effectiveness of the proposed method.

  2. A Condition Number for Non-Rigid Shape Matching

    KAUST Repository

    Ovsjanikov, Maks

    2011-08-01

    © 2011 The Author(s). Despite the large amount of work devoted in recent years to the problem of non-rigid shape matching, practical methods that can successfully be used for arbitrary pairs of shapes remain elusive. In this paper, we study the hardness of the problem of shape matching, and introduce the notion of the shape condition number, which captures the intuition that some shapes are inherently more difficult to match against than others. In particular, we make a connection between the symmetry of a given shape and the stability of any method used to match it while optimizing a given distortion measure. We analyze two commonly used classes of methods in deformable shape matching, and show that the stability of both types of techniques can be captured by the appropriate notion of a condition number. We also provide a practical way to estimate the shape condition number and show how it can be used to guide the selection of landmark correspondences between shapes. Thus we shed some light on the reasons why general shape matching remains difficult and provide a way to detect and mitigate such difficulties in practice.

  3. Building a high-resolution T2-weighted MR-based probabilistic model of tumor occurrence in the prostate.

    Science.gov (United States)

    Nagarajan, Mahesh B; Raman, Steven S; Lo, Pechin; Lin, Wei-Chan; Khoshnoodi, Pooria; Sayre, James W; Ramakrishna, Bharath; Ahuja, Preeti; Huang, Jiaoti; Margolis, Daniel J A; Lu, David S K; Reiter, Robert E; Goldin, Jonathan G; Brown, Matthew S; Enzmann, Dieter R

    2018-02-19

    We present a method for generating a T2 MR-based probabilistic model of tumor occurrence in the prostate to guide the selection of anatomical sites for targeted biopsies and serve as a diagnostic tool to aid radiological evaluation of prostate cancer. In our study, the prostate and any radiological findings within were segmented retrospectively on 3D T2-weighted MR images of 266 subjects who underwent radical prostatectomy. Subsequent histopathological analysis determined both the ground truth and the Gleason grade of the tumors. A randomly chosen subset of 19 subjects was used to generate a multi-subject-derived prostate template. Subsequently, a cascading registration algorithm involving both affine and non-rigid B-spline transforms was used to register the prostate of every subject to the template. Corresponding transformation of radiological findings yielded a population-based probabilistic model of tumor occurrence. The quality of our probabilistic model building approach was statistically evaluated by measuring the proportion of correct placements of tumors in the prostate template, i.e., the number of tumors that maintained their anatomical location within the prostate after their transformation into the prostate template space. Probabilistic model built with tumors deemed clinically significant demonstrated a heterogeneous distribution of tumors, with higher likelihood of tumor occurrence at the mid-gland anterior transition zone and the base-to-mid-gland posterior peripheral zones. Of 250 MR lesions analyzed, 248 maintained their original anatomical location with respect to the prostate zones after transformation to the prostate. We present a robust method for generating a probabilistic model of tumor occurrence in the prostate that could aid clinical decision making, such as selection of anatomical sites for MR-guided prostate biopsies.

  4. Robust feature estimation by non-rigid hierarchical image registration and its application in disparity measurement

    Science.gov (United States)

    Badshah, Amir; Choudhry, Aadil Jaleel; Ullah, Shan

    2017-03-01

    Industries are moving towards automation in order to increase productivity and ensure quality. Variety of electronic and electromagnetic systems are being employed to assist human operator in fast and accurate quality inspection of products. Majority of these systems are equipped with cameras and rely on diverse image processing algorithms. Information is lost in 2D image, therefore acquiring accurate 3D data from 2D images is an open issue. FAST, SURF and SIFT are well-known spatial domain techniques for features extraction and henceforth image registration to find correspondence between images. The efficiency of these methods is measured in terms of the number of perfect matches found. A novel fast and robust technique for stereo-image processing is proposed. It is based on non-rigid registration using modified normalized phase correlation. The proposed method registers two images in hierarchical fashion using quad-tree structure. The registration process works through global to local level resulting in robust matches even in presence of blur and noise. The computed matches can further be utilized to determine disparity and depth for industrial product inspection. The same can be used in driver assistance systems. The preliminary tests on Middlebury dataset produced satisfactory results. The execution time for a 413 x 370 stereo-pair is 500ms approximately on a low cost DSP.

  5. Performance study of dimensionality reduction methods for metrology of nonrigid mechanical parts

    Directory of Open Access Journals (Sweden)

    Radvar-Esfahlan H.

    2013-01-01

    Full Text Available The geometric measurement of parts using a coordinate measuring machine (CMM has been generally adapted to the advanced automotive and aerospace industries. However, for the geometric inspection of deformable free-form parts, special inspection fixtures, in combination with CMM’s and/or optical data acquisition devices (scanners, are used. As a result, the geometric inspection of flexible parts is a consuming process in terms of time and money. The general procedure to eliminate the use of inspection fixtures based on distance preserving nonlinear dimensionality reduction (NLDR technique was developed in our previous works. We sought out geometric properties that are invariant to inelastic deformations. In this paper we will only present a systematic comparison of some well-known dimensionality reduction techniques in order to evaluate their accuracy and potential for non-rigid metrology. We will demonstrate that even though these techniques may provide acceptable results through artificial data on certain fields like pattern recognition and machine learning, this performance cannot be extended to all real engineering metrology problems where high accuracy is needed.

  6. Validation of TMJ osteoarthritis synthetic defect database via non-rigid registration

    Science.gov (United States)

    Paniagua, Beatriz; Pera, Juliette; Budin, Francois; Gomes, Liliane; Styner, Martin; Lucia, Cevidanes; Nguyen, Tung

    2015-03-01

    Temporomandibular joint (TMJ) disorders are a group of conditions that cause pain and dysfunction in the jaw joint and the muscles controlling jaw movement. However, diagnosis and treatment of these conditions remain controversial. To date, there is no single sign, symptom, or test that can clearly diagnose early stages of osteoarthritis (OA). Instead, the diagnosis is based on a consideration of several factors, including radiological evaluation. The current radiological diagnosis scores of TMJ pathology are subject to misdiagnosis. We believe these scores are limited by the acquisition procedures, such as oblique cuts of the CT and head positioning errors, and can lead to incorrect diagnoses of flattening of the head of the condyle, formation of osteophytes, or condylar pitting. This study consists of creating and validating a methodological framework to simulate defects in CBCT scans of known location and size, in order to create synthetic TMJ OA database. User-generated defects were created using a non-rigid deformation protocol in CBCT. All segmentation evaluation, surface distances and linear distances from the user-generated to the simulated defects showed our methodological framework to be very precise and within a voxel (0.5 mm) of magnitude. A TMJ OA synthetic database will be created next, and evaluated by expert radiologists, and this will serve to evaluate how sensitive the current radiological diagnosis tools are.

  7. A field map guided approach to non-rigid registration of brain EPI to structural MRI

    Science.gov (United States)

    Gholipour, Ali; Kehtarnavaz, Nasser; Briggs, Richard W.; Gopinath, Kaundinya S.

    2007-03-01

    It is known that along the phase encoding direction the effect of magnetic field inhomogeneity causes significant spatial distortions in fast functional MRI Echo Planar Imaging (EPI). In this work, our previously developed distortion correction technique via a non-rigid registration of EPI to anatomical MRI is improved by adding information from field maps to achieve a more accurate and efficient registration. Local deformation models are used in regions of distortion artifacts instead of using a global non-rigid transformation. The use of local deformations not only enhances the efficiency of the non-rigid registration by reducing the number of deformation model parameters, but also provides constraints to avoid physically incorrect deformations in undistorted regions. The accuracy and reliability of the non-rigid registration technique is improved by using an additional high-resolution gradient echo EPI scan. In-vivo validation is performed by comparing the similarity of the low-resolution EPI to various structural MRI scans before and after applying the computed deformation models. Visual inspection of the images, as well as Mutual Information (MI) and Normalized Cross Correlation (NCC) comparisons, reveal improvements within the sub-voxel range in the moderately distorted areas but not in the signal loss regions.

  8. Active zone impact on deformation state of non-rigid pavement

    Directory of Open Access Journals (Sweden)

    Mandula Ján

    2014-06-01

    Full Text Available The paper deals with the design of non-rigid pavement, with emphasis on the effect of active zone on its deformation state. The concepts of determination of active zone are described. The results of numerical modelling of pavement laying on elastic subgrade are presented in the paper

  9. Learned Non-Rigid Object Motion is a View-Invariant Cue to Recognizing Novel Objects.

    Science.gov (United States)

    Chuang, Lewis L; Vuong, Quoc C; Bülthoff, Heinrich H

    2012-01-01

    There is evidence that observers use learned object motion to recognize objects. For instance, studies have shown that reversing the learned direction in which a rigid object rotated in depth impaired recognition accuracy. This motion reversal can be achieved by playing animation sequences of moving objects in reverse frame order. In the current study, we used this sequence-reversal manipulation to investigate whether observers encode the motion of dynamic objects in visual memory, and whether such dynamic representations are encoded in a way that is dependent on the viewing conditions. Participants first learned dynamic novel objects, presented as animation sequences. Following learning, they were then tested on their ability to recognize these learned objects when their animation sequence was shown in the same sequence order as during learning or in the reverse sequence order. In Experiment 1, we found that non-rigid motion contributed to recognition performance; that is, sequence-reversal decreased sensitivity across different tasks. In subsequent experiments, we tested the recognition of non-rigidly deforming (Experiment 2) and rigidly rotating (Experiment 3) objects across novel viewpoints. Recognition performance was affected by viewpoint changes for both experiments. Learned non-rigid motion continued to contribute to recognition performance and this benefit was the same across all viewpoint changes. By comparison, learned rigid motion did not contribute to recognition performance. These results suggest that non-rigid motion provides a source of information for recognizing dynamic objects, which is not affected by changes to viewpoint.

  10. Nonrigid image registration using multi-scale 3D convolutional neural networks

    NARCIS (Netherlands)

    Sokooti, Hessam; de Vos, Bob; Berendsen, Floris; Lelieveldt, Boudewijn P.F.; Išgum, Ivana; Staring, Marius

    2017-01-01

    In this paper we propose a method to solve nonrigid image registration through a learning approach, instead of via iterative optimization of a predefined dissimilarity metric. We design a Convolutional Neural Network (CNN) architecture that, in contrast to all other work, directly estimates the

  11. Nonrigid Image Registration for Head and Neck Cancer Radiotherapy Treatment Planning With PET/CT

    International Nuclear Information System (INIS)

    Ireland, Rob H.; Dyker, Karen E.; Barber, David C.; Wood, Steven M.; Hanney, Michael B.; Tindale, Wendy B.; Woodhouse, Neil; Hoggard, Nigel; Conway, John; Robinson, Martin H.

    2007-01-01

    Purpose: Head and neck radiotherapy planning with positron emission tomography/computed tomography (PET/CT) requires the images to be reliably registered with treatment planning CT. Acquiring PET/CT in treatment position is problematic, and in practice for some patients it may be beneficial to use diagnostic PET/CT for radiotherapy planning. Therefore, the aim of this study was first to quantify the image registration accuracy of PET/CT to radiotherapy CT and, second, to assess whether PET/CT acquired in diagnostic position can be registered to planning CT. Methods and Materials: Positron emission tomography/CT acquired in diagnostic and treatment position for five patients with head and neck cancer was registered to radiotherapy planning CT using both rigid and nonrigid image registration. The root mean squared error for each method was calculated from a set of anatomic landmarks marked by four independent observers. Results: Nonrigid and rigid registration errors for treatment position PET/CT to planning CT were 2.77 ± 0.80 mm and 4.96 ± 2.38 mm, respectively, p = 0.001. Applying the nonrigid registration to diagnostic position PET/CT produced a more accurate match to the planning CT than rigid registration of treatment position PET/CT (3.20 ± 1.22 mm and 4.96 ± 2.38 mm, respectively, p = 0.012). Conclusions: Nonrigid registration provides a more accurate registration of head and neck PET/CT to treatment planning CT than rigid registration. In addition, nonrigid registration of PET/CT acquired with patients in a standardized, diagnostic position can provide images registered to planning CT with greater accuracy than a rigid registration of PET/CT images acquired in treatment position. This may allow greater flexibility in the timing of PET/CT for head and neck cancer patients due to undergo radiotherapy

  12. Technical note: Accelerated nonrigid motion-compensated isotropic 3D coronary MR angiography.

    Science.gov (United States)

    Correia, Teresa; Cruz, Gastão; Schneider, Torben; Botnar, René M; Prieto, Claudia

    2018-01-01

    To develop an accelerated and nonrigid motion-compensated technique for efficient isotropic 3D whole-heart coronary magnetic resonance angiography (CMRA) with Cartesian acquisition. Highly efficient whole-heart 3D CMRA was achieved by combining image reconstruction from undersampled data using compressed sensing (CS) with a nonrigid motion compensation framework. Undersampled acquisition was performed using a variable-density Cartesian trajectory with radial order (VD-CAPR). Motion correction was performed in two steps: beat-to-beat 2D translational correction with motion estimated from interleaved image navigators, and bin-to-bin 3D nonrigid correction with motion estimated from respiratory-resolved images reconstructed from undersampled 3D CMRA data using CS. Nonrigid motion fields were incorporated into an undersampled motion-compensated reconstruction, which combines CS with the general matrix description formalism. The proposed approach was tested on 10 healthy subjects and compared against a conventional twofold accelerated 5-mm navigator-gated and tracked acquisition. The proposed method achieves isotropic 1.2-mm Cartesian whole-heart CMRA in 5 min ± 1 min (~8× acceleration). The proposed approach provides good-quality images of the left and right coronary arteries, comparable to those of a twofold accelerated navigator-gated and tracked acquisition, but scan time was up to about four times faster. For both coronaries, no significant differences (P > 0.05) in vessel sharpness and length were found between the proposed method and reference scan. The feasibility of a highly efficient motion-compensated reconstruction framework for accelerated 3D CMRA has been demonstrated in healthy subjects. Further investigation is required to assess the clinical value of the method. © 2017 The Authors. Medical Physics published by Wiley Periodicals, Inc. on behalf of American Association of Physicists in Medicine.

  13. Dynamic Non-Rigid Objects Reconstruction with a Single RGB-D Sensor

    Directory of Open Access Journals (Sweden)

    Sen Wang

    2018-03-01

    Full Text Available This paper deals with the 3D reconstruction problem for dynamic non-rigid objects with a single RGB-D sensor. It is a challenging task as we consider the almost inevitable accumulation error issue in some previous sequential fusion methods and also the possible failure of surface tracking in a long sequence. Therefore, we propose a global non-rigid registration framework and tackle the drifting problem via an explicit loop closure. Our novel scheme starts with a fusion step to get multiple partial scans from the input sequence, followed by a pairwise non-rigid registration and loop detection step to obtain correspondences between neighboring partial pieces and those pieces that form a loop. Then, we perform a global registration procedure to align all those pieces together into a consistent canonical space as guided by those matches that we have established. Finally, our proposed model-update step helps fixing potential misalignments that still exist after the global registration. Both geometric and appearance constraints are enforced during our alignment; therefore, we are able to get the recovered model with accurate geometry as well as high fidelity color maps for the mesh. Experiments on both synthetic and various real datasets have demonstrated the capability of our approach to reconstruct complete and watertight deformable objects.

  14. Robust non-rigid point set registration using student's-t mixture model.

    Directory of Open Access Journals (Sweden)

    Zhiyong Zhou

    Full Text Available The Student's-t mixture model, which is heavily tailed and more robust than the Gaussian mixture model, has recently received great attention on image processing. In this paper, we propose a robust non-rigid point set registration algorithm using the Student's-t mixture model. Specifically, first, we consider the alignment of two point sets as a probability density estimation problem and treat one point set as Student's-t mixture model centroids. Then, we fit the Student's-t mixture model centroids to the other point set which is treated as data. Finally, we get the closed-form solutions of registration parameters, leading to a computationally efficient registration algorithm. The proposed algorithm is especially effective for addressing the non-rigid point set registration problem when significant amounts of noise and outliers are present. Moreover, less registration parameters have to be set manually for our algorithm compared to the popular coherent points drift (CPD algorithm. We have compared our algorithm with other state-of-the-art registration algorithms on both 2D and 3D data with noise and outliers, where our non-rigid registration algorithm showed accurate results and outperformed the other algorithms.

  15. Comparison of Adjacent Segment Degeneration After Nonrigid Fixation System and Posterior Lumbar Interbody Fusion for Single-Level Lumbar Disc Herniation: A New Method of MRI Analysis of Lumbar Nucleus Pulposus Volume.

    Science.gov (United States)

    Yang, Shaofeng; Liu, Yanan; Bao, Zhaohua; Zou, Jun; Yang, Huilin

    2017-05-19

    To evaluate the influence of a nonrigid fixation system and posterior lumbar interbody fusion on adjacent intervertebral disc degeneration by using MRI analysis of lumbar nucleus pulposus volume for single-level lumbar disc herniation. We selected 112 patients who underwent nonrigid fixation (17 men and 44 women) or posterior lumbar interbody fusion (13 men and 38 women) for this retrospective study. Based on the T2-weighted magnetic resonance imaging (MRI) scans taken preoperatively, and 6, 12, and 24 months after surgery, the nucleus pulposus in the upper segments of the operated level was considered an ellipsoid, and their volumes were measured respectively and then compared between the two groups. The posterior lumbar interbody fusion group had significantly lower lumbar nucleus pulposus volume than the nonrigid fixation group at 12 (4.04 ± 1.42 vs. 5.25 ± 1.47 mm 3 ) and 24 months (4.16 ± 0.89 vs. 5.06 ± 1.23 mm 3 ), and had the highest nucleus pulposus. Meanwhile, the h value in the posterior lumbar interbody fusion group was notably smaller than the preoperative level at 12 (0.46 ± 0.03 vs. 0.55 ± 0.05 mm) and 24 months (0.44 ± 0.03 vs. 0.55 ± 0.05 mm). MRI analysis of lumbar nucleus pulposus volume is a new and quantitative method of analysis, which is a considerable method and contributes to the detection of severe intervertebral disc degeneration. Based on this new method, nonrigid fixation demonstrates excellent outcomes on the adjacent segment in comparison with posterior lumbar interbody fusion.

  16. Evaluation of non-rigid constrained CT/CBCT registration algorithms for delineation propagation in the context of prostate cancer radiotherapy

    Science.gov (United States)

    Rubeaux, Mathieu; Simon, Antoine; Gnep, Khemara; Colliaux, Jérémy; Acosta, Oscar; de Crevoisier, Renaud; Haigron, Pascal

    2013-03-01

    Image-Guided Radiation Therapy (IGRT) aims at increasing the precision of radiation dose delivery. In the context of prostate cancer, a planning Computed Tomography (CT) image with manually defined prostate and organs at risk (OAR) delineations is usually associated with daily Cone Beam Computed Tomography (CBCT) follow-up images. The CBCT images allow to visualize the prostate position and to reposition the patient accordingly. They also should be used to evaluate the dose received by the organs at each fraction of the treatment. To do so, the first step is a prostate and OAR segmentation on the daily CBCTs, which is very timeconsuming. To simplify this task, CT to CBCT non-rigid registration could be used in order to propagate the original CT delineations in the CBCT images. For this aim, we compared several non-rigid registration methods. They are all based on the Mutual Information (MI) similarity measure, and use a BSpline transformation model. But we add different constraints to this global scheme in order to evaluate their impact on the final results. These algorithms are investigated on two real datasets, representing a total of 70 CBCT on which a reference delineation has been realized. The evaluation is led using the Dice Similarity Coefficient (DSC) as a quality criteria. The experiments show that a rigid penalty term on the bones improves the final registration result, providing high quality propagated delineations.

  17. Improving supervised classification accuracy using non-rigid multimodal image registration: detecting prostate cancer

    Science.gov (United States)

    Chappelow, Jonathan; Viswanath, Satish; Monaco, James; Rosen, Mark; Tomaszewski, John; Feldman, Michael; Madabhushi, Anant

    2008-03-01

    Computer-aided diagnosis (CAD) systems for the detection of cancer in medical images require precise labeling of training data. For magnetic resonance (MR) imaging (MRI) of the prostate, training labels define the spatial extent of prostate cancer (CaP); the most common source for these labels is expert segmentations. When ancillary data such as whole mount histology (WMH) sections, which provide the gold standard for cancer ground truth, are available, the manual labeling of CaP can be improved by referencing WMH. However, manual segmentation is error prone, time consuming and not reproducible. Therefore, we present the use of multimodal image registration to automatically and accurately transcribe CaP from histology onto MRI following alignment of the two modalities, in order to improve the quality of training data and hence classifier performance. We quantitatively demonstrate the superiority of this registration-based methodology by comparing its results to the manual CaP annotation of expert radiologists. Five supervised CAD classifiers were trained using the labels for CaP extent on MRI obtained by the expert and 4 different registration techniques. Two of the registration methods were affi;ne schemes; one based on maximization of mutual information (MI) and the other method that we previously developed, Combined Feature Ensemble Mutual Information (COFEMI), which incorporates high-order statistical features for robust multimodal registration. Two non-rigid schemes were obtained by succeeding the two affine registration methods with an elastic deformation step using thin-plate splines (TPS). In the absence of definitive ground truth for CaP extent on MRI, classifier accuracy was evaluated against 7 ground truth surrogates obtained by different combinations of the expert and registration segmentations. For 26 multimodal MRI-WMH image pairs, all four registration methods produced a higher area under the receiver operating characteristic curve compared to that

  18. Non-rigid contour-to-pixel registration of photographic and quantitative light-induced fluorescence imaging of decalcified teeth

    Science.gov (United States)

    Berkels, Benjamin; Deserno, Thomas; Ehrlich, Eva E.; Fritz, Ulrike B.; Sirazitdinova, Ekaterina; Tatano, Rosalia

    2016-03-01

    Quantitative light-induced fluorescence (QLF) is widely used to assess the damage of a tooth due to decalcification. In digital photographs, decalcification appears as white spot lesions, i.e. white spots on the tooth surface. We propose a novel multimodal registration approach for the matching of digital photographs and QLF images of decalcified teeth. The registration is based on the idea of contour-to-pixel matching. Here, the curve, which represents the shape of the tooth, is extracted from the QLF image using a contour segmentation by binarization and morphological processing. This curve is aligned to the photo with a non-rigid variational registration approach. Thus, the registration problem is formulated as minimization problem with an objective function that consists of a data term and a regularizer for the deformation. To construct the data term, the photo is pointwise classified into tooth and non-tooth regions. Then, the signed distance function of the tooth region allows to measure the mismatch between curve and photo. As regularizer a higher order, linear elastic prior is used. The resulting minimization problem is solved numerically using bilinear Finite Elements for the spatial discretization and the Gauss-Newton algorithm. The evaluation is based on 150 image pairs, where an average of 5 teeth have been captured from 32 subjects. All registrations have been confirmed correctly by a dental expert. The contour-to-pixel methods can directly be used in 3D for surface-to-voxel tasks.

  19. Efficient Constrained Local Model Fitting for Non-Rigid Face Alignment.

    Science.gov (United States)

    Lucey, Simon; Wang, Yang; Cox, Mark; Sridharan, Sridha; Cohn, Jeffery F

    2009-11-01

    Active appearance models (AAMs) have demonstrated great utility when being employed for non-rigid face alignment/tracking. The "simultaneous" algorithm for fitting an AAM achieves good non-rigid face registration performance, but has poor real time performance (2-3 fps). The "project-out" algorithm for fitting an AAM achieves faster than real time performance (> 200 fps) but suffers from poor generic alignment performance. In this paper we introduce an extension to a discriminative method for non-rigid face registration/tracking referred to as a constrained local model (CLM). Our proposed method is able to achieve superior performance to the "simultaneous" AAM algorithm along with real time fitting speeds (35 fps). We improve upon the canonical CLM formulation, to gain this performance, in a number of ways by employing: (i) linear SVMs as patch-experts, (ii) a simplified optimization criteria, and (iii) a composite rather than additive warp update step. Most notably, our simplified optimization criteria for fitting the CLM divides the problem of finding a single complex registration/warp displacement into that of finding N simple warp displacements. From these N simple warp displacements, a single complex warp displacement is estimated using a weighted least-squares constraint. Another major advantage of this simplified optimization lends from its ability to be parallelized, a step which we also theoretically explore in this paper. We refer to our approach for fitting the CLM as the "exhaustive local search" (ELS) algorithm. Experiments were conducted on the CMU Multi-PIE database.

  20. A batch Algorithm for Implicit Non-Rigid Shape and Motion Recovery

    DEFF Research Database (Denmark)

    Bartoli, Adrien; Olsen, Søren Ingvor

    2005-01-01

    The recovery of 3D shape and camera motion for non-rigid scenes from single-camera video footage is a very important problem in computer vision. The low-rank shape model consists in regarding the deformations as linear combinations of basis shapes. Most algorithms for reconstructing the parameters...... of the subsequence, using a robust estimator incorporating a model selection criterion that detects erroneous image points. Preliminary experimental results on real and simulated data show that our algorithm deals with challenging video sequences....

  1. Numerical calculation of the stress-strain state of non-rigid pavements, renovated by cold recycling technology

    Directory of Open Access Journals (Sweden)

    Світлана Михайлівна Талах

    2017-01-01

    Full Text Available The problem of improving the scientific basis to determine the stress-strain state of non-rigid pavements, renovated by cold recycling technology, is considered. The results of numerical calculation of stress-strain state of non-rigid pavements in the section of road Kyv-Kovel (297 + 700 km - 302 + 400 km are given using automated calculation software complex of thin-walled spatial structures (KARTPK. The real state of the road section through 8.5 years after the renovation is analyzed

  2. Nonrigid synthetic aperture radar and optical image coregistration by combining local rigid transformations using a Kohonen network.

    Science.gov (United States)

    Salehpour, Mehdi; Behrad, Alireza

    2017-10-01

    This study proposes a new algorithm for nonrigid coregistration of synthetic aperture radar (SAR) and optical images. The proposed algorithm employs point features extracted by the binary robust invariant scalable keypoints algorithm and a new method called weighted bidirectional matching for initial correspondence. To refine false matches, we assume that the transformation between SAR and optical images is locally rigid. This property is used to refine false matches by assigning scores to matched pairs and clustering local rigid transformations using a two-layer Kohonen network. Finally, the thin plate spline algorithm and mutual information are used for nonrigid coregistration of SAR and optical images.

  3. Craniofacial Statistical Deformation Models of Wild-type mice and Crouzon mice

    DEFF Research Database (Denmark)

    Ólafsdóttir, Hildur; Darvann, Tron Andre; Ersbøll, Bjarne Kjær

    2007-01-01

    Crouzon syndrome is characterised by the premature fusion of cranial sutures and synchondroses leading to craniofacial growth disturbances. The gene causing the syndrome was discovered approximately a decade ago and recently the first mouse model of the syndrome was generated. In this study, a set...... using B-spline-based nonrigid registration and subsequently, the atlas was nonrigidly registered to the cases being modelled. The parameters of these registrations were then used as input to a PCA. Using different sets of registration parameters, different models were constructed to describe (i...

  4. A deformation model for non-rigid registration of the kidney

    Science.gov (United States)

    Ong, Rowena E.; Glisson, Courtenay L.; Herrell, S. Duke; Miga, Michael I.; Galloway, Robert

    2009-02-01

    The development of an image-guided renal surgery system may aid tumor resection during partial nephrectomies. This system would require the registration of pre-operative kidney CT or MR scans to the physical kidney; however, the amount of non-rigid deformation occurring during surgery and whether it can be corrected for in an image-guided system is unknown. One possible source of non-rigid deformation is a change in pressure within the kidney: during surgery, clamping of the renal artery and vein results in a loss of perfusion, such that the subsequent cutting of the kidney and fluid outflow may cause a decrease in intrarenal pressure. In this work, we attempt to characterize the deformation due to cutting of the kidney and subsequent changes in intrarenal pressure. To accomplish this, we perfused a resected porcine kidney at a physiologically realistic pressure, clamped the renal vessels, and cut the kidney using a tracked scalpel. The resulting deformation was tracked in a CT scanner using 15-20 glass bead fiducials attached to the kidney surface. A modified form of Biot's consolidation model was used to simulate the deformation, and the accuracy was assessed by calculating the target registration error and image similarity.

  5. Nonrigid registration method to assess reproducibility of breath-holding with ABC in lung cancer

    International Nuclear Information System (INIS)

    Sarrut, David; Boldea, Vlad; Ayadi, Myriam; Badel, Jean-Noel; Ginestet, Chantal; Clippe, Sebastien; Carrie, Christian

    2005-01-01

    Purpose: To study the interfraction reproducibility of breath-holding using active breath control (ABC), and to develop computerized tools to evaluate three-dimensional (3D) intrathoracic motion in each patient. Methods and materials: Since June 2002, 11 patients with non-small-cell lung cancer enrolled in a Phase II trial have undergone four CT scans: one during free-breathing (reference) and three using ABC. Patients left the room between breath-hold scans. The patient's breath was held at the same predefined phase of the breathing cycle (about 70% of the vital capacity) using the ABC device, then patients received 3D-conformal radiotherapy. Automated computerized tools for breath-hold CT scans were developed to analyze lung and tumor interfraction residual motions with 3D nonrigid registration. Results: All patients but one were safely treated with ABC for 7 weeks. For 6 patients, the lung volume differences were 300 cm 3 and displacements >10 mm, probably owing to atelectasia and emphysema. One patient was excluded, and two others had incomplete data sets. Conclusion: Breath-holding with ABC was effective in 6 patients, and discrepancies were clinically accountable in 2. The proposed 3D nonrigid registration method allows for personalized evaluation of breath-holding reproducibility with ABC. It will be used to adapt the patient-specific internal margins

  6. Understanding geological processes: Visualization of rigid and non-rigid transformations

    Science.gov (United States)

    Shipley, T. F.; Atit, K.; Manduca, C. A.; Ormand, C. J.; Resnick, I.; Tikoff, B.

    2012-12-01

    Visualizations are used in the geological sciences to support reasoning about structures and events. Research in cognitive sciences offers insights into the range of skills of different users, and ultimately how visualizations might support different users. To understand the range of skills needed to reason about earth processes we have developed a program of research that is grounded in the geosciences' careful description of the spatial and spatiotemporal patterns associated with earth processes. In particular, we are pursuing a research program that identifies specific spatial skills and investigates whether and how they are related to each other. For this study, we focus on a specific question: Is there an important distinction in the geosciences between rigid and non-rigid deformation? To study a general spatial thinking skill we employed displays with non-geological objects that had been altered by rigid change (rotation), and two types of non-rigid change ("brittle" (or discontinuous) and "ductile" (or continuous) deformation). Disciplinary scientists (geosciences and chemistry faculty), and novices (non-science faculty and undergraduate psychology students) answered questions that required them to visualize the appearance of the object before the change. In one study, geologists and chemists were found to be superior to non-science faculty in reasoning about rigid rotations (e.g., what an object would look like from a different perspective). Geologists were superior to chemists in reasoning about brittle deformations (e.g., what an object looked like before it was broken - here the object was a word cut into many fragments displaced in different directions). This finding is consistent with two hypotheses: 1) Experts are good at visualizing the types of changes required for their domain; and 2) Visualization of rigid and non-rigid changes are not the same skill. An additional important finding is that there was a broad range of skill in both rigid and non-rigid

  7. Infrared and Raman study of the fast internal motions of non-rigid molecules in condensed state: method of selective deuteration

    International Nuclear Information System (INIS)

    Lascombe, J.; Cavagnat, D.; Lassegues, J.C.; Rafilipomanana, C.

    1983-01-01

    The dynamical behaviour of non-rigid molecules in the gas state is now well known but very little information is available on these molecules in condensed state. The authors present a method of study based on the analysis of the infrared and Raman spectra of selectively deuterated molecules. It is applied to the nitromethane and cyclopentene molecules which provide respectively characteristic examples of methyl internal rotation and ring-puckering motion. In each case, an isolated -C0 or -CD oscillator is modulated by the internal motion and several γ(CH) or γ(CD) bands are observed as a result of the dependence of the vibrational frequency of the oscillator on its conformational situation. Moreover, in the case of crystalline nitromethane a detailed study of the temperature dependence of the band profiles allows the main mechanism of relaxation of the -CH oscillator to be deduced. (orig.)

  8. THE PROGRAM OF NON-RIGID PAVEMENT COMPUTER-AIDED CALCULATION УКРРДО 15

    Directory of Open Access Journals (Sweden)

    I. Musiienko

    2016-06-01

    Full Text Available A program for computer-aided calculation of non-rigid road coating UKRRDO 15 is considered in the given article. The program interface, a set of input data and the results of calculations are considered in detail. Calculations are performed for three strength criteria: permissible elastic deflection, shear strength of subsoil and monolithic layers resistance of tensile bending.

  9. Object-constrained meshless deformable algorithm for high speed 3D nonrigid registration between CT and CBCT

    International Nuclear Information System (INIS)

    Chen Ting; Kim, Sung; Goyal, Sharad; Jabbour, Salma; Zhou Jinghao; Rajagopal, Gunaretnum; Haffty, Bruce; Yue Ning

    2010-01-01

    Purpose: High-speed nonrigid registration between the planning CT and the treatment CBCT data is critical for real time image guided radiotherapy (IGRT) to improve the dose distribution and to reduce the toxicity to adjacent organs. The authors propose a new fully automatic 3D registration framework that integrates object-based global and seed constraints with the grayscale-based ''demons'' algorithm. Methods: Clinical objects were segmented on the planning CT images and were utilized as meshless deformable models during the nonrigid registration process. The meshless models reinforced a global constraint in addition to the grayscale difference between CT and CBCT in order to maintain the shape and the volume of geometrically complex 3D objects during the registration. To expedite the registration process, the framework was stratified into hierarchies, and the authors used a frequency domain formulation to diffuse the displacement between the reference and the target in each hierarchy. Also during the registration of pelvis images, they replaced the air region inside the rectum with estimated pixel values from the surrounding rectal wall and introduced an additional seed constraint to robustly track and match the seeds implanted into the prostate. The proposed registration framework and algorithm were evaluated on 15 real prostate cancer patients. For each patient, prostate gland, seminal vesicle, bladder, and rectum were first segmented by a radiation oncologist on planning CT images for radiotherapy planning purpose. The same radiation oncologist also manually delineated the tumor volumes and critical anatomical structures in the corresponding CBCT images acquired at treatment. These delineated structures on the CBCT were only used as the ground truth for the quantitative validation, while structures on the planning CT were used both as the input to the registration method and the ground truth in validation. By registering the planning CT to the CBCT, a

  10. A novel flexible framework with automatic feature correspondence optimization for nonrigid registration in radiotherapy

    International Nuclear Information System (INIS)

    Vasquez Osorio, Eliana M.; Hoogeman, Mischa S.; Bondar, Luiza; Levendag, Peter C.; Heijmen, Ben J. M.

    2009-01-01

    Technical improvements in planning and dose delivery and in verification of patient positioning have substantially widened the therapeutic window for radiation treatment of cancer. However, changes in patient anatomy during the treatment limit the exploitation of these new techniques. To further improve radiation treatments, anatomical changes need to be modeled and accounted for. Nonrigid registration can be used for this purpose. This article describes the design, the implementation, and the validation of a new framework for nonrigid registration for radiotherapy applications. The core of this framework is an improved version of the thin plate spline robust point matching (TPS-RPM) algorithm. The TPS-RPM algorithm estimates a global correspondence and a transformation between the points that represent organs of interest belonging to two image sets. However, the algorithm does not allow for the inclusion of prior knowledge on the correspondence of subset of points, and therefore, it can lead to inconsistent anatomical solutions. In this article TPS-RPM was improved by employing a novel correspondence filter that supports simultaneous registration of multiple structures. The improved method allows for coherent organ registration and for the inclusion of user-defined landmarks, lines, and surfaces inside and outside of structures of interest. A procedure to generate control points from segmented organs is described. The framework parameters r and λ, which control the number of points and the nonrigidness of the transformation, respectively, were optimized for three sites with different degrees of deformation (head and neck, prostate, and cervix) using two cases per site. For the head and neck cases, the salivary glands were manually contoured on CT scans, for the prostate cases the prostate and the vesicles, and for the cervix cases the cervix uterus, the bladder, and the rectum. The transformation error obtained using the best set of parameters was below 1 mm for

  11. NMR discrimination in nonrigid prochiral solutes dissolved in chiral liquid crystals: symmetry considerations.

    Science.gov (United States)

    Lesot, Philippe; Luz, Zeev; Aroulanda, Christie; Zimmermann, Herbert

    2014-10-01

    Enantiodiscrimination in the NMR spectra of flexible prochiral solutes dissolved in chiral liquid crystals (CLCs) is reviewed and compared with the analog phenomenon in such rigid solutes. In rigid prochiral solutes, the discrimination is brought about by the cancellation of improper symmetry elements upon dissolving in CLC within the frame of solute-solvent ordering mechanisms. If this reduction in symmetry renders the ordering of enantiotopic sites dissimilar, spectral discrimination may be observed. Symmetry considerations indicate that this is only possible for improper nonaxial groups lacking inversion symmetry. Nonrigid prochiral solutes consist of rapidly (on the NMR timescale) interconverting enantiomers, in which the racemization is accompanied by exchange of nonequivalent sites. These sites become, on the average, enantiotopically related, and in CLC, they exhibit spectral discrimination. The mechanism of the effect and the symmetry selection rules are different for the two cases. Specifically, the discrimination in flexible prochiral compounds results from the different ordering of the interchanging enantiomers in CLC. Using Altman's definition of average symmetry (Proc. R. Soc. A, 1967, 298, 184), selection rules for the phenomenon are derived. It follows that chiral discrimination in nonrigid prochiral solutes is much more abundant and can occur in all symmetry types except those possessing inversion. In particular, contrary to earlier thoughts, the effect can occur in compounds with axial symmetry. Illustrative examples of such studies with particular emphasis on compounds with average axial symmetry of the type D(3h), C(3v) and C(3h) are reviewed in this contribution. Copyright © 2014 John Wiley & Sons, Ltd.

  12. MKSOR iterative method with cubic b-spline approximation for ...

    African Journals Online (AJOL)

    Seidel (GS), Successive Over Relaxation (SOR) and Modified Kaudd Successive Over Relaxation (MKSOR) used to solve the generated systems of linear equations. For the purpose of comparison, the GS iterative method has been designated ...

  13. Segmented Regression Based on Cut-off Polynomials

    Directory of Open Access Journals (Sweden)

    Miloš Kaňka

    2016-06-01

    Full Text Available In Statistika: Statistics and Economy Journal No. 4/2015 (pp. 39–58, author’s paper Segmented Regression Based on B-splines with Solved Examples was published. Use of B-spline basis functions has many advantages, the most important being a special form of matrix of system of normal equations suitable for quick solution of this system. The subject of this paper is to explain how that segmented regression can be mathematically developer in other way, which doesn’t require the knowledge of relatively complicated theory of B-spline basis functions, but is based on simpler apparatus of cut-off polynomials. The author considers a detailed calculation of matrix of system of normal equations elements and elaboration of so called polygonal method, as his contribution to issues of segmented regression. This method can be used to automatically obtain required values of nodal points. Author pays major attention to computing elements of matrix of systém of normal equations, which he also developed as computer program called TRIO.

  14. Spline based iterative phase retrieval algorithm for X-ray differential phase contrast radiography.

    Science.gov (United States)

    Nilchian, Masih; Wang, Zhentian; Thuering, Thomas; Unser, Michael; Stampanoni, Marco

    2015-04-20

    Differential phase contrast imaging using grating interferometer is a promising alternative to conventional X-ray radiographic methods. It provides the absorption, differential phase and scattering information of the underlying sample simultaneously. Phase retrieval from the differential phase signal is an essential problem for quantitative analysis in medical imaging. In this paper, we formalize the phase retrieval as a regularized inverse problem, and propose a novel discretization scheme for the derivative operator based on B-spline calculus. The inverse problem is then solved by a constrained regularized weighted-norm algorithm (CRWN) which adopts the properties of B-spline and ensures a fast implementation. The method is evaluated with a tomographic dataset and differential phase contrast mammography data. We demonstrate that the proposed method is able to produce phase image with enhanced and higher soft tissue contrast compared to conventional absorption-based approach, which can potentially provide useful information to mammographic investigations.

  15. Automatic segmentation of phase-correlated CT scans through nonrigid image registration using geometrically regularized free-form deformation.

    Science.gov (United States)

    Shekhar, Raj; Lei, Peng; Castro-Pareja, Carlos R; Plishker, William L; D'Souza, Warren D

    2007-07-01

    Conventional radiotherapy is planned using free-breathing computed tomography (CT), ignoring the motion and deformation of the anatomy from respiration. New breath-hold-synchronized, gated, and four-dimensional (4D) CT acquisition strategies are enabling radiotherapy planning utilizing a set of CT scans belonging to different phases of the breathing cycle. Such 4D treatment planning relies on the availability of tumor and organ contours in all phases. The current practice of manual segmentation is impractical for 4D CT, because it is time consuming and tedious. A viable solution is registration-based segmentation, through which contours provided by an expert for a particular phase are propagated to all other phases while accounting for phase-to-phase motion and anatomical deformation. Deformable image registration is central to this task, and a free-form deformation-based nonrigid image registration algorithm will be presented. Compared with the original algorithm, this version uses novel, computationally simpler geometric constraints to preserve the topology of the dense control-point grid used to represent free-form deformation and prevent tissue fold-over. Using mean squared difference as an image similarity criterion, the inhale phase is registered to the exhale phase of lung CT scans of five patients and of characteristically low-contrast abdominal CT scans of four patients. In addition, using expert contours for the inhale phase, the corresponding contours were automatically generated for the exhale phase. The accuracy of the segmentation (and hence deformable image registration) was judged by comparing automatically segmented contours with expert contours traced directly in the exhale phase scan using three metrics: volume overlap index, root mean square distance, and Hausdorff distance. The accuracy of the segmentation (in terms of radial distance mismatch) was approximately 2 mm in the thorax and 3 mm in the abdomen, which compares favorably to the

  16. Evolutionary algorithm based offline/online path planner for UAV navigation.

    Science.gov (United States)

    Nikolos, I K; Valavanis, K P; Tsourveloudis, N C; Kostaras, A N

    2003-01-01

    An evolutionary algorithm based framework, a combination of modified breeder genetic algorithms incorporating characteristics of classic genetic algorithms, is utilized to design an offline/online path planner for unmanned aerial vehicles (UAVs) autonomous navigation. The path planner calculates a curved path line with desired characteristics in a three-dimensional (3-D) rough terrain environment, represented using B-spline curves, with the coordinates of its control points being the evolutionary algorithm artificial chromosome genes. Given a 3-D rough environment and assuming flight envelope restrictions, two problems are solved: i) UAV navigation using an offline planner in a known environment, and, ii) UAV navigation using an online planner in a completely unknown environment. The offline planner produces a single B-Spline curve that connects the starting and target points with a predefined initial direction. The online planner, based on the offline one, is given on-board radar readings which gradually produces a smooth 3-D trajectory aiming at reaching a predetermined target in an unknown environment; the produced trajectory consists of smaller B-spline curves smoothly connected with each other. Both planners have been tested under different scenarios, and they have been proven effective in guiding an UAV to its final destination, providing near-optimal curved paths quickly and efficiently.

  17. Robust CPD Algorithm for Non-Rigid Point Set Registration Based on Structure Information.

    Directory of Open Access Journals (Sweden)

    Lei Peng

    Full Text Available Recently, the Coherent Point Drift (CPD algorithm has become a very popular and efficient method for point set registration. However, this method does not take into consideration the neighborhood structure information of points to find the correspondence and requires a manual assignment of the outlier ratio. Therefore, CPD is not robust for large degrees of degradation. In this paper, an improved method is proposed to overcome the two limitations of CPD. A structure descriptor, such as shape context, is used to perform the auxiliary calculation of the correspondence, and the proportion of each GMM component is adjusted by the similarity. The outlier ratio is formulated in the EM framework so that it can be automatically calculated and optimized iteratively. The experimental results on both synthetic data and real data demonstrate that the proposed method described here is more robust to deformation, noise, occlusion, and outliers than CPD and other state-of-the-art algorithms.

  18. Topology preserving non-rigid image registration using time-varying elasticity model for MRI brain volumes.

    Science.gov (United States)

    Ahmad, Sahar; Khan, Muhammad Faisal

    2015-12-01

    In this paper, we present a new non-rigid image registration method that imposes a topology preservation constraint on the deformation. We propose to incorporate the time varying elasticity model into the deformable image matching procedure and constrain the Jacobian determinant of the transformation over the entire image domain. The motion of elastic bodies is governed by a hyperbolic partial differential equation, generally termed as elastodynamics wave equation, which we propose to use as a deformation model. We carried out clinical image registration experiments on 3D magnetic resonance brain scans from IBSR database. The results of the proposed registration approach in terms of Kappa index and relative overlap computed over the subcortical structures were compared against the existing topology preserving non-rigid image registration methods and non topology preserving variant of our proposed registration scheme. The Jacobian determinant maps obtained with our proposed registration method were qualitatively and quantitatively analyzed. The results demonstrated that the proposed scheme provides good registration accuracy with smooth transformations, thereby guaranteeing the preservation of topology. Copyright © 2015 Elsevier Ltd. All rights reserved.

  19. A Grid service for the interactive use of a parallel non-rigid registration algorithm of medical images.

    Science.gov (United States)

    Stefanescu, R; Pennec, X; Ayache, N

    2005-01-01

    The goal of this work is to improve the usability of a non-rigid registration software for medical images. We have built a registration grid service in order to use the interactivity of a visualization workstation and the computing power of a cluster. On the user side, the system is composed of a graphical interface that interacts in a complex and fluid manner with the registration software running on a remote cluster. Although the transmission of images back and forth between the computer running the user interface and the cluster running the registration service adds to the total registration time, it provides a user-friendly way of using the registration software without heavy infrastructure investments in hospitals. The system exhibits good performances even if the user is connected to the grid service through a low throughput network such as a wireless network interface or ADSL.

  20. Analysis of velocity planning interpolation algorithm based on NURBS curve

    Science.gov (United States)

    Zhang, Wanjun; Gao, Shanping; Cheng, Xiyan; Zhang, Feng

    2017-04-01

    To reduce interpolation time and Max interpolation error in NURBS (Non-Uniform Rational B-Spline) inter-polation caused by planning Velocity. This paper proposed a velocity planning interpolation algorithm based on NURBS curve. Firstly, the second-order Taylor expansion is applied on the numerator in NURBS curve representation with parameter curve. Then, velocity planning interpolation algorithm can meet with NURBS curve interpolation. Finally, simulation results show that the proposed NURBS curve interpolator meet the high-speed and high-accuracy interpolation requirements of CNC systems. The interpolation of NURBS curve should be finished.

  1. Clinical Implementation of an Online Adaptive Plan-of-the-Day Protocol for Nonrigid Motion Management in Locally Advanced Cervical Cancer IMRT

    Energy Technology Data Exchange (ETDEWEB)

    Heijkoop, Sabrina T., E-mail: s.heijkoop@erasmusmc.nl; Langerak, Thomas R.; Quint, Sandra; Bondar, Luiza; Mens, Jan Willem M.; Heijmen, Ben J.M.; Hoogeman, Mischa S.

    2014-11-01

    Purpose: To evaluate the clinical implementation of an online adaptive plan-of-the-day protocol for nonrigid target motion management in locally advanced cervical cancer intensity modulated radiation therapy (IMRT). Methods and Materials: Each of the 64 patients had four markers implanted in the vaginal fornix to verify the position of the cervix during treatment. Full and empty bladder computed tomography (CT) scans were acquired prior to treatment to build a bladder volume-dependent cervix-uterus motion model for establishment of the plan library. In the first phase of clinical implementation, the library consisted of one IMRT plan based on a single model-predicted internal target volume (mpITV), covering the target for the whole pretreatment observed bladder volume range, and a 3D conformal radiation therapy (3DCRT) motion-robust backup plan based on the same mpITV. The planning target volume (PTV) combined the ITV and nodal clinical target volume (CTV), expanded with a 1-cm margin. In the second phase, for patients showing >2.5-cm bladder-induced cervix-uterus motion during planning, two IMRT plans were constructed, based on mpITVs for empty-to-half-full and half-full-to-full bladder. In both phases, a daily cone beam CT (CBCT) scan was acquired to first position the patient based on bony anatomy and nodal targets and then select the appropriate plan. Daily post-treatment CBCT was used to verify plan selection. Results: Twenty-four and 40 patients were included in the first and second phase, respectively. In the second phase, 11 patients had two IMRT plans. Overall, an IMRT plan was used in 82.4% of fractions. The main reasons for selecting the motion-robust backup plan were uterus outside the PTV (27.5%) and markers outside their margin (21.3%). In patients with two IMRT plans, the half-full-to-full bladder plan was selected on average in 45% of the first 12 fractions, which was reduced to 35% in the last treatment fractions. Conclusions: The implemented

  2. Clinical Implementation of an Online Adaptive Plan-of-the-Day Protocol for Nonrigid Motion Management in Locally Advanced Cervical Cancer IMRT

    International Nuclear Information System (INIS)

    Heijkoop, Sabrina T.; Langerak, Thomas R.; Quint, Sandra; Bondar, Luiza; Mens, Jan Willem M.; Heijmen, Ben J.M.; Hoogeman, Mischa S.

    2014-01-01

    Purpose: To evaluate the clinical implementation of an online adaptive plan-of-the-day protocol for nonrigid target motion management in locally advanced cervical cancer intensity modulated radiation therapy (IMRT). Methods and Materials: Each of the 64 patients had four markers implanted in the vaginal fornix to verify the position of the cervix during treatment. Full and empty bladder computed tomography (CT) scans were acquired prior to treatment to build a bladder volume-dependent cervix-uterus motion model for establishment of the plan library. In the first phase of clinical implementation, the library consisted of one IMRT plan based on a single model-predicted internal target volume (mpITV), covering the target for the whole pretreatment observed bladder volume range, and a 3D conformal radiation therapy (3DCRT) motion-robust backup plan based on the same mpITV. The planning target volume (PTV) combined the ITV and nodal clinical target volume (CTV), expanded with a 1-cm margin. In the second phase, for patients showing >2.5-cm bladder-induced cervix-uterus motion during planning, two IMRT plans were constructed, based on mpITVs for empty-to-half-full and half-full-to-full bladder. In both phases, a daily cone beam CT (CBCT) scan was acquired to first position the patient based on bony anatomy and nodal targets and then select the appropriate plan. Daily post-treatment CBCT was used to verify plan selection. Results: Twenty-four and 40 patients were included in the first and second phase, respectively. In the second phase, 11 patients had two IMRT plans. Overall, an IMRT plan was used in 82.4% of fractions. The main reasons for selecting the motion-robust backup plan were uterus outside the PTV (27.5%) and markers outside their margin (21.3%). In patients with two IMRT plans, the half-full-to-full bladder plan was selected on average in 45% of the first 12 fractions, which was reduced to 35% in the last treatment fractions. Conclusions: The implemented

  3. Calculation of the temperature of asphalt concrete at making the joints of multilane road pavement of non-rigid type

    Directory of Open Access Journals (Sweden)

    Giyasov Botir Iminzhonovich

    2015-03-01

    Full Text Available The construction quality of road surface of non-rigid type essentially depend on providing the temperature regimes in the process of laying and packing of hot asphalt concrete mixtures. In order to provide the required characteristics of asphalt concrete due to the surface width it is necessary to provide the temperature regimes of hot asphalt concrete mixture in the zones of lane connection. The hot mixture is promptly cooling right after laying within several minutes, which results, according to the construction technology and the specific conditions of work production, in temperature abuse of the mixture at joints of the lanes at packing. The authors present the analysis of the technology of arranging multilane road surface by one paver with the possibility of heating the surface lane edge with the temperature of the adjacent lane. The results of the studies of the production conditions effect on the temperature of edge heating of the previously laid lanes, and the time required to achieve the maximum heating temperature depending on the relative thickness of coating layers.

  4. Influence of the tidal variations of the angular velocity on the rotation of the non-rigid Earth

    Science.gov (United States)

    Escapa, Alberto; Ferrándiz, José M.; Baenas, Tomás

    2017-04-01

    The lunisolar perturbation induces variations of the Earth's angular velocity components with nearly diurnal period, modulated by combinations of the orbital frequencies of the Moon and the Sun. These tidal variations of the angular velocity give rise to a redistribution of mass of the non-rigid Earth that, in turn, affects its rotational motion. We present a model of the former effect for a two-layer elastic Earth. Specifically, following the Hamiltonian formalism, we obtain formulae of this contribution for the precession and nutation of the Earth's figure axis. The analytical nature of our model allows its numerical evaluation for different Earth rheological models, providing values within current threshold requirements. For example, we obtain a value of the precession rate in longitude about 11 milliarcseconds per century, entailing a variation of the dynamical ellipticity of the Earth of two parts per million, comparable to other recent second order contributions to the precession rate (Baenas et al. 2017). Therefore, the effects of tidal variations of the angular velocity should be considered in the enhancement of the accuracy of the IAU2000 and IAU2006 nutation and precession theories.

  5. Automatic Detection of Wild-type Mouse Cranial Sutures

    DEFF Research Database (Denmark)

    Ólafsdóttir, Hildur; Darvann, Tron Andre; Hermann, Nuno V.

    , automatic detection of the cranial sutures becomes important. We have previously built a craniofacial, wild-type mouse atlas from a set of 10 Micro CT scans using a B-spline-based nonrigid registration method by Rueckert et al. Subsequently, all volumes were registered nonrigidly to the atlas. Using...... these transformations, any annotation on the atlas can automatically be transformed back to all cases. For this study, two rounds of tracing seven of the cranial sutures, were performed on the atlas by one observer. The average of the two rounds was automatically propagated to all the cases. For validation......, the observer traced the sutures on each of the mouse volumes as well. The observer outperforms the automatic approach by approximately 0.1 mm. All mice have similar errors while the suture error plots reveal that suture 1 and 2 are cumbersome, both for the observer and the automatic approach. These sutures can...

  6. A smooth local path planning algorithm based on modified visibility graph

    Science.gov (United States)

    Lv, Taizhi; Feng, Maoyan

    2017-07-01

    Path planning is an essential and inevitable problem in robotics. Trapping in local minima and discontinuities often exist in local path planning. To overcome these drawbacks, this paper presents a smooth path planning algorithm based on modified visibility graph. This algorithm consists of three steps: (1) polygons are generated from detected obstacles; (2) a collision-free path is found by simultaneous visibility graph construction and path search by A∗ (SVGA); (3) the path is smoothed by B-spline curves and particle swarm optimization (PSO). Simulation experiment results show the effectiveness of this algorithm, and a smooth path can be found fleetly.

  7. Local Anatomic Changes in Parotid and Submandibular Glands During Radiotherapy for Oropharynx Cancer and Correlation With Dose, Studied in Detail With Nonrigid Registration

    International Nuclear Information System (INIS)

    Vasquez Osorio, Eliana M.; Hoogeman, Mischa S.; Al-Mamgani, Abrahim; Teguh, David N.; Levendag, Peter C.; Heijmen, Ben J.M.

    2008-01-01

    Purpose: To quantify the anatomic changes caused by external beam radiotherapy in head-and-neck cancer patients in full three dimensions and to relate the local anatomic changes to the planned mean dose. Methods and Materials: A nonrigid registration method was adapted for RT image registration. The method was applied in 10 head-and-neck cancer patients, who each underwent a planning and a repeat computed tomography scan. Contoured structures (parotid, submandibular glands, and tumor) were registered in a nonrigid manner. The accuracy of the transformation was determined. The transformation results were used to summarize the anatomic changes on a local scale for the irradiated and spared glands. The volume reduction of the glands was related to the planned mean dose. Results: Transformation was accurate with a mean error of 0.6 ± 0.5 mm. The volume of all glands and the primary tumor decreased. The lateral regions of the irradiated parotid glands moved inward (average, 3 mm), and the medial regions tended to remain in the same position. The irradiated submandibular glands shrank and moved upward. The spared glands showed only a small deformation (∼1 mm in most regions). Overall, the primary tumors shrank. The volume loss of the parotid glands correlated significantly with the planned mean dose (p <0.001). Conclusion: General shrinkage and deformation of irradiated glands was seen. The spared glands showed few changes. These changes were assessed by a nonrigid registration method, which effectively described the local changes occurring in the head-and-neck region after external beam radiotherapy

  8. The effect of rigid and non-rigid connections between implants and teeth on biological and technical complications: a systematic review and a meta-analysis.

    Science.gov (United States)

    Tsaousoglou, Phoebus; Michalakis, Konstantinos; Kang, Kiho; Weber, Hans-Peter; Sculean, Anton

    2017-07-01

    To assess survival, as well as technical and biological complication rates of partial fixed dental prostheses (FDPs) supported by implants and teeth. An electronic Medline search was conducted to identify articles, published in dental journals from January 1980 to August 2015, reporting on partial FDPs supported by implants and teeth. The search terms were categorized into four groups comprising the PICO question. Manual searches of published full-text articles and related reviews were also performed. The initial database search produced 3587 relevant titles. Three hundred and eighty-six articles were retrieved for abstract review, while 39 articles were selected for full-text review. A total of 10 studies were selected for inclusion. Overall survival rate for implants ranged between 90% and 100%, after follow-up periods with a mean range of 18-120 months. The survival of the abutment teeth was 94.1-100%, while the prostheses survival was 85-100% for the same time period. The most frequent complications were "periapical lesions" (11.53%). The most frequent technical complication was "porcelain occlusal fracture" (16.6%), followed by "screw loosening" (15%). According to the meta-analysis, no intrusion was noted on the rigid connection group, while five teeth (8.19%) were intruded in the non-rigid connection group [95% CI (0.013-0.151)]. The tooth-implant FDP seems to be a possible alternative to an implant-supported FDP. There is limited evidence that rigid connection between teeth and implants presents better results when compared with the non-rigid one. The major drawback of non-rigidly connected FDPs is tooth intrusion. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  9. A new technique for noise reduction at coronary CT angiography with multi-phase data-averaging and non-rigid image registration.

    Science.gov (United States)

    Tatsugami, Fuminari; Higaki, Toru; Nakamura, Yuko; Yamagami, Takuji; Date, Shuji; Fujioka, Chikako; Kiguchi, Masao; Kihara, Yasuki; Awai, Kazuo

    2015-01-01

    To investigate the feasibility of a newly developed noise reduction technique at coronary CT angiography (CTA) that uses multi-phase data-averaging and non-rigid image registration. Sixty-five patients underwent coronary CTA with prospective ECG-triggering. The range of the phase window was set at 70-80% of the R-R interval. First, three sets of consecutive volume data at 70%, 75% and 80% of the R-R interval were prepared. Second, we applied non-rigid registration to align the 70% and 80% images to the 75% image. Finally, we performed weighted averaging of the three images and generated a de-noised image. The image noise and contrast-to-noise ratio (CNR) in the proximal coronary arteries between the conventional 75% and the de-noised images were compared. Two radiologists evaluated the image quality using a 5-point scale (1, poor; 5, excellent). On de-noised images, mean image noise was significantly lower than on conventional 75% images (18.3 HU ± 2.6 vs. 23.0 HU ± 3.3, P < 0.01) and the CNR was significantly higher (P < 0.01). The mean image quality score for conventional 75% and de-noised images was 3.9 and 4.4, respectively (P < 0.01). Our method reduces image noise and improves image quality at coronary CTA. • We introduce a new method for image noise reduction at cardiac CT. • Multiple data acquisitions of an object and their averaging yield lower noise. • Our method uses multi-phase images reconstructed from unused redundant imaging data. • It reduces image noise by averaging multi-phase images transformed by non-rigid registration. • This method achieves a 20% image noise reduction at cardiac CT.

  10. A new technique for noise reduction at coronary CT angiography with multi-phase data-averaging and non-rigid image registration

    Energy Technology Data Exchange (ETDEWEB)

    Tatsugami, Fuminari; Higaki, Toru; Nakamura, Yuko; Yamagami, Takuji; Date, Shuji; Awai, Kazuo [Hiroshima University, Department of Diagnostic Radiology, Minami-ku, Hiroshima (Japan); Fujioka, Chikako; Kiguchi, Masao [Hiroshima University, Department of Radiology, Minami-ku, Hiroshima (Japan); Kihara, Yasuki [Hiroshima University, Department of Cardiovascular Medicine, Minami-ku, Hiroshima (Japan)

    2015-01-15

    To investigate the feasibility of a newly developed noise reduction technique at coronary CT angiography (CTA) that uses multi-phase data-averaging and non-rigid image registration. Sixty-five patients underwent coronary CTA with prospective ECG-triggering. The range of the phase window was set at 70-80 % of the R-R interval. First, three sets of consecutive volume data at 70 %, 75 % and 80 % of the R-R interval were prepared. Second, we applied non-rigid registration to align the 70 % and 80 % images to the 75 % image. Finally, we performed weighted averaging of the three images and generated a de-noised image. The image noise and contrast-to-noise ratio (CNR) in the proximal coronary arteries between the conventional 75 % and the de-noised images were compared. Two radiologists evaluated the image quality using a 5-point scale (1, poor; 5, excellent). On de-noised images, mean image noise was significantly lower than on conventional 75 % images (18.3 HU ± 2.6 vs. 23.0 HU ± 3.3, P < 0.01) and the CNR was significantly higher (P < 0.01). The mean image quality score for conventional 75 % and de-noised images was 3.9 and 4.4, respectively (P < 0.01). Our method reduces image noise and improves image quality at coronary CTA. (orig.)

  11. Value of Nonrigid Registration of Pre-Procedure MR with Post-Procedure CT After Radiofrequency Ablation for Hepatocellular Carcinoma

    Energy Technology Data Exchange (ETDEWEB)

    Park, Juil; Lee, Jeong Min, E-mail: jmlshy2000@gmail.com, E-mail: jmsh@snu.ac.kr; Lee, Dong Ho; Joo, Ijin; Yoon, Jeong Hee [Seoul National University Hospital, Department of Radiology (Korea, Republic of); Park, Jin Young [Dongnam Institute of Radiological and Medical Sciences, Department of Radiology (Korea, Republic of); Klotz, Ernst [Siemens Healthineers, Computed Tomography (Germany)

    2017-06-15

    PurposeTo evaluate the value of pre-radiofrequency ablation (RFA) MR and post-RFA CT registration for the assessment of the therapeutic response of hepatocellular carcinoma (HCC).Materials and MethodsA total of 178 patients with single HCC who received RFA as an initial treatment and had available pre-RFA MR and post-RFA CT images were included in this retrospective study. Two independent readers (one experienced radiologist, one inexperienced radiologist) scored the ablative margin (AM) of treated tumors on a four-point scale (1, residual tumor; 2, incomplete AM; 3, borderline AM; 4, sufficient AM), in two separate sessions: (1) visual comparison between pre-and post-RFA images; (2) with addition of nonrigid registration for pre- and post-RFA images. Local tumor progression (LTP) rates between low-risk (response score, 3–4) and high-risk groups (1–2) were analyzed using the Kaplan–Meier method at each interpretation session.ResultsThe patients’ reassignments after using the registered images were statistically significant for inexperienced reader (p < 0.001). In the inexperienced reader, LTP rates of low- and high-risk groups were significantly different with addition of registered images (session 2) (p < 0.001), but not significantly different in session 1 (p = 0.101). However, in the experienced reader, LTP rates of low- and high-risk groups were significantly different in both interpretation sessions (p < 0.001). Using the registered images, the cumulative incidence of LTP at 2 years was 3.0–6.6%, for the low-risk group, and 18.6–27.8% for the high-risk group.ConclusionRegistration between pre-RFA MR and post-RFA CT images may allow better assessment of the therapeutic response of HCC after RFA, especially for inexperienced radiologists, helping in the risk stratification for LTP.

  12. Non-rigid CT/CBCT to CBCT registration for online external beam radiotherapy guidance

    Science.gov (United States)

    Zachiu, Cornel; de Senneville, Baudouin Denis; Tijssen, Rob H. N.; Kotte, Alexis N. T. J.; Houweling, Antonetta C.; Kerkmeijer, Linda G. W.; Lagendijk, Jan J. W.; Moonen, Chrit T. W.; Ries, Mario

    2018-01-01

    Image-guided external beam radiotherapy (EBRT) allows radiation dose deposition with a high degree of accuracy and precision. Guidance is usually achieved by estimating the displacements, via image registration, between cone beam computed tomography (CBCT) and computed tomography (CT) images acquired at different stages of the therapy. The resulting displacements are then used to reposition the patient such that the location of the tumor at the time of treatment matches its position during planning. Moreover, ongoing research aims to use CBCT-CT image registration for online plan adaptation. However, CBCT images are usually acquired using a small number of x-ray projections and/or low beam intensities. This often leads to the images being subject to low contrast, low signal-to-noise ratio and artifacts, which ends-up hampering the image registration process. Previous studies addressed this by integrating additional image processing steps into the registration procedure. However, these steps are usually designed for particular image acquisition schemes, therefore limiting their use on a case-by-case basis. In the current study we address CT to CBCT and CBCT to CBCT registration by the means of the recently proposed EVolution registration algorithm. Contrary to previous approaches, EVolution does not require the integration of additional image processing steps in the registration scheme. Moreover, the algorithm requires a low number of input parameters, is easily parallelizable and provides an elastic deformation on a point-by-point basis. Results have shown that relative to a pure CT-based registration, the intrinsic artifacts present in typical CBCT images only have a sub-millimeter impact on the accuracy and precision of the estimated deformation. In addition, the algorithm has low computational requirements, which are compatible with online image-based guidance of EBRT treatments.

  13. Improving oncoplastic breast tumor bed localization for radiotherapy planning using image registration algorithms

    Science.gov (United States)

    Wodzinski, Marek; Skalski, Andrzej; Ciepiela, Izabela; Kuszewski, Tomasz; Kedzierawski, Piotr; Gajda, Janusz

    2018-02-01

    Knowledge about tumor bed localization and its shape analysis is a crucial factor for preventing irradiation of healthy tissues during supportive radiotherapy and as a result, cancer recurrence. The localization process is especially hard for tumors placed nearby soft tissues, which undergo complex, nonrigid deformations. Among them, breast cancer can be considered as the most representative example. A natural approach to improving tumor bed localization is the use of image registration algorithms. However, this involves two unusual aspects which are not common in typical medical image registration: the real deformation field is discontinuous, and there is no direct correspondence between the cancer and its bed in the source and the target 3D images respectively. The tumor no longer exists during radiotherapy planning. Therefore, a traditional evaluation approach based on known, smooth deformations and target registration error are not directly applicable. In this work, we propose alternative artificial deformations which model the tumor bed creation process. We perform a comprehensive evaluation of the most commonly used deformable registration algorithms: B-Splines free form deformations (B-Splines FFD), different variants of the Demons and TV-L1 optical flow. The evaluation procedure includes quantitative assessment of the dedicated artificial deformations, target registration error calculation, 3D contour propagation and medical experts visual judgment. The results demonstrate that the currently, practically applied image registration (rigid registration and B-Splines FFD) are not able to correctly reconstruct discontinuous deformation fields. We show that the symmetric Demons provide the most accurate soft tissues alignment in terms of the ability to reconstruct the deformation field, target registration error and relative tumor volume change, while B-Splines FFD and TV-L1 optical flow are not an appropriate choice for the breast tumor bed localization problem

  14. Real-time non-rigid target tracking for ultrasound-guided clinical interventions

    Science.gov (United States)

    Zachiu, C.; Ries, M.; Ramaekers, P.; Guey, J.-L.; Moonen, C. T. W.; de Senneville, B. Denis

    2017-10-01

    Biological motion is a problem for non- or mini-invasive interventions when conducted in mobile/deformable organs due to the targeted pathology moving/deforming with the organ. This may lead to high miss rates and/or incomplete treatment of the pathology. Therefore, real-time tracking of the target anatomy during the intervention would be beneficial for such applications. Since the aforementioned interventions are often conducted under B-mode ultrasound (US) guidance, target tracking can be achieved via image registration, by comparing the acquired US images to a separate image established as positional reference. However, such US images are intrinsically altered by speckle noise, introducing incoherent gray-level intensity variations. This may prove problematic for existing intensity-based registration methods. In the current study we address US-based target tracking by employing the recently proposed EVolution registration algorithm. The method is, by construction, robust to transient gray-level intensities. Instead of directly matching image intensities, EVolution aligns similar contrast patterns in the images. Moreover, the displacement is computed by evaluating a matching criterion for image sub-regions rather than on a point-by-point basis, which typically provides more robust motion estimates. However, unlike similar previously published approaches, which assume rigid displacements in the image sub-regions, the EVolution algorithm integrates the matching criterion in a global functional, allowing the estimation of an elastic dense deformation. The approach was validated for soft tissue tracking under free-breathing conditions on the abdomen of seven healthy volunteers. Contact echography was performed on all volunteers, while three of the volunteers also underwent standoff echography. Each of the two modalities is predominantly specific to a particular type of non- or mini-invasive clinical intervention. The method demonstrated on average an accuracy of

  15. Distortion Correction in Fetal EPI Using Non-Rigid Registration With a Laplacian Constraint.

    Science.gov (United States)

    Kuklisova-Murgasova, Maria; Lockwood Estrin, Georgia; Nunes, Rita G; Malik, Shaihan J; Rutherford, Mary A; Rueckert, Daniel; Hajnal, Joseph V

    2018-01-01

    Geometric distortion induced by the main B0 field disrupts the consistency of fetal echo planar imaging (EPI) data, on which diffusion and functional magnetic resonance imaging is based. In this paper, we present a novel data-driven method for simultaneous motion and distortion correction of fetal EPI. A motion-corrected and reconstructed T2 weighted single shot fast spin echo (ssFSE) volume is used as a model of undistorted fetal brain anatomy. Our algorithm interleaves two registration steps: estimation of fetal motion parameters by aligning EPI slices to the model; and deformable registration of EPI slices to slices simulated from the undistorted model to estimate the distortion field. The deformable registration is regularized by a physically inspired Laplacian constraint, to model distortion induced by a source-free background B0 field. Our experiments show that distortion correction significantly improves consistency of reconstructed EPI volumes with ssFSE volumes. In addition, the estimated distortion fields are consistent with fields calculated from acquired field maps, and the Laplacian constraint is essential for estimation of plausible distortion fields. The EPI volumes reconstructed from different scans of the same subject were more consistent when the proposed method was used in comparison with EPI volumes reconstructed from data distortion corrected using a separately acquired B0 field map.

  16. Cage-based performance capture

    CERN Document Server

    Savoye, Yann

    2014-01-01

    Nowadays, highly-detailed animations of live-actor performances are increasingly easier to acquire and 3D Video has reached considerable attentions in visual media production. In this book, we address the problem of extracting or acquiring and then reusing non-rigid parametrization for video-based animations. At first sight, a crucial challenge is to reproduce plausible boneless deformations while preserving global and local captured properties of dynamic surfaces with a limited number of controllable, flexible and reusable parameters. To solve this challenge, we directly rely on a skin-detached dimension reduction thanks to the well-known cage-based paradigm. First, we achieve Scalable Inverse Cage-based Modeling by transposing the inverse kinematics paradigm on surfaces. Thus, we introduce a cage inversion process with user-specified screen-space constraints. Secondly, we convert non-rigid animated surfaces into a sequence of optimal cage parameters via Cage-based Animation Conversion. Building upon this re...

  17. 3D full-field quantification of cell-induced large deformations in fibrillar biomaterials by combining non-rigid image registration with label-free second harmonic generation.

    Science.gov (United States)

    Jorge-Peñas, Alvaro; Bové, Hannelore; Sanen, Kathleen; Vaeyens, Marie-Mo; Steuwe, Christian; Roeffaers, Maarten; Ameloot, Marcel; Van Oosterwyck, Hans

    2017-08-01

    To advance our current understanding of cell-matrix mechanics and its importance for biomaterials development, advanced three-dimensional (3D) measurement techniques are necessary. Cell-induced deformations of the surrounding matrix are commonly derived from the displacement of embedded fiducial markers, as part of traction force microscopy (TFM) procedures. However, these fluorescent markers may alter the mechanical properties of the matrix or can be taken up by the embedded cells, and therefore influence cellular behavior and fate. In addition, the currently developed methods for calculating cell-induced deformations are generally limited to relatively small deformations, with displacement magnitudes and strains typically of the order of a few microns and less than 10% respectively. Yet, large, complex deformation fields can be expected from cells exerting tractions in fibrillar biomaterials, like collagen. To circumvent these hurdles, we present a technique for the 3D full-field quantification of large cell-generated deformations in collagen, without the need of fiducial markers. We applied non-rigid, Free Form Deformation (FFD)-based image registration to compute full-field displacements induced by MRC-5 human lung fibroblasts in a collagen type I hydrogel by solely relying on second harmonic generation (SHG) from the collagen fibrils. By executing comparative experiments, we show that comparable displacement fields can be derived from both fibrils and fluorescent beads. SHG-based fibril imaging can circumvent all described disadvantages of using fiducial markers. This approach allows measuring 3D full-field deformations under large displacement (of the order of 10 μm) and strain regimes (up to 40%). As such, it holds great promise for the study of large cell-induced deformations as an inherent component of cell-biomaterial interactions and cell-mediated biomaterial remodeling. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Adaptive local surface refinement based on LR NURBS and its application to contact

    Science.gov (United States)

    Zimmermann, Christopher; Sauer, Roger A.

    2017-12-01

    A novel adaptive local surface refinement technique based on Locally Refined Non-Uniform Rational B-Splines (LR NURBS) is presented. LR NURBS can model complex geometries exactly and are the rational extension of LR B-splines. The local representation of the parameter space overcomes the drawback of non-existent local refinement in standard NURBS-based isogeometric analysis. For a convenient embedding into general finite element codes, the Bézier extraction operator for LR NURBS is formulated. An automatic remeshing technique is presented that allows adaptive local refinement and coarsening of LR NURBS. In this work, LR NURBS are applied to contact computations of 3D solids and membranes. For solids, LR NURBS-enriched finite elements are used to discretize the contact surfaces with LR NURBS finite elements, while the rest of the body is discretized by linear Lagrange finite elements. For membranes, the entire surface is discretized by LR NURBS. Various numerical examples are shown, and they demonstrate the benefit of using LR NURBS: Compared to uniform refinement, LR NURBS can achieve high accuracy at lower computational cost.

  19. GENERAL THEORY OF THE ROTATION OF THE NON-RIGID EARTH AT THE SECOND ORDER. I. THE RIGID MODEL IN ANDOYER VARIABLES

    International Nuclear Information System (INIS)

    Getino, J.; Miguel, D.; Escapa, A.

    2010-01-01

    This paper is the first part of an investigation where we will present an analytical general theory of the rotation of the non-rigid Earth at the second order, which considers the effects of the interaction of the rotation of the Earth with itself, also named as the spin-spin coupling. Here, and as a necessary step in the development of that theory, we derive complete, explicit, analytical formulae of the rigid Earth rotation that account for the second-order rotation-rotation interaction. These expressions are not provided in this form by any current rigid Earth model. Working within the Hamiltonian framework established by Kinoshita, we study the second-order effects arising from the interaction of the main term in the Earth geopotential expansion with itself, and with the complementary term arising when referring the rotational motion to the moving ecliptic. To this aim, we apply a canonical perturbation method to solve analytically the canonical equations at the second order, determining the expressions that provide the nutation-precession, the polar motion, and the length of day. In the case of the motion of the equatorial plane, nutation-precession, we compare our general approach with the particular study for this motion developed by Souchay et al., showing the existence of new terms whose numerical values are within the truncation level of 0.1 μas adopted by those authors. These terms emerge as a consequence of not assuming in this work the same restrictive simplifications taken by Souchay et al. The importance of these additional contributions is that, as the analytical formulae show, they depend on the Earth model considered, in such a way that the fluid core resonance could amplify them significatively when extending this theory to the non-rigid Earth models.

  20. Utilization of a hybrid finite-element based registration method to quantify heterogeneous tumor response for adaptive treatment for lung cancer patients

    Science.gov (United States)

    Sharifi, Hoda; Zhang, Hong; Bagher-Ebadian, Hassan; Lu, Wei; Ajlouni, Munther I.; Jin, Jian-Yue; (Spring Kong, Feng-Ming; Chetty, Indrin J.; Zhong, Hualiang

    2018-03-01

    Tumor response to radiation treatment (RT) can be evaluated from changes in metabolic activity between two positron emission tomography (PET) images. Activity changes at individual voxels in pre-treatment PET images (PET1), however, cannot be derived until their associated PET-CT (CT1) images are appropriately registered to during-treatment PET-CT (CT2) images. This study aimed to investigate the feasibility of using deformable image registration (DIR) techniques to quantify radiation-induced metabolic changes on PET images. Five patients with non-small-cell lung cancer (NSCLC) treated with adaptive radiotherapy were considered. PET-CTs were acquired two weeks before RT and 18 fractions after the start of RT. DIR was performed from CT1 to CT2 using B-Spline and diffeomorphic Demons algorithms. The resultant displacements in the tumor region were then corrected using a hybrid finite element method (FEM). Bitmap masks generated from gross tumor volumes (GTVs) in PET1 were deformed using the four different displacement vector fields (DVFs). The conservation of total lesion glycolysis (TLG) in GTVs was used as a criterion to evaluate the quality of these registrations. The deformed masks were united to form a large mask which was then partitioned into multiple layers from center to border. The averages of SUV changes over all the layers were 1.0  ±  1.3, 1.0  ±  1.2, 0.8  ±  1.3, 1.1  ±  1.5 for the B-Spline, B-Spline  +  FEM, Demons and Demons  +  FEM algorithms, respectively. TLG changes before and after mapping using B-Spline, Demons, hybrid-B-Spline, and hybrid-Demons registrations were 20.2%, 28.3%, 8.7%, and 2.2% on average, respectively. Compared to image intensity-based DIR algorithms, the hybrid FEM modeling technique is better in preserving TLG and could be useful for evaluation of tumor response for patients with regressing tumors.

  1. Isogeometric Divergence-conforming B-splines for the Unsteady Navier-Stokes Equations

    Science.gov (United States)

    2012-04-01

    remark on the role of helicity. Comptes Rendus Mathematique , 347:613–618, 2009. [9] M E Brachet. Small-scale structure of the Taylor-Green vortex...suitable. Journal de Mathematiques Pures et Appliquees, 88:87–106, 2007. [25] J-L Guermond. On the use of the notion of suitable weak solutions in CFD

  2. On Gabor frames generated by sign-changing windows and B-splines

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2015-01-01

    For a class of compactly supported windows we characterize the frame property for a Gabor system {EmbTnag}m,nZ, for translation parameters a belonging to a certain range depending on the support size. We show that the obstructions to the frame property are located on a countable number of "curves...

  3. Lateral Penumbra Modelling Based Leaf End Shape Optimization for Multileaf Collimator in Radiotherapy

    Directory of Open Access Journals (Sweden)

    Dong Zhou

    2016-01-01

    Full Text Available Lateral penumbra of multileaf collimator plays an important role in radiotherapy treatment planning. Growing evidence has revealed that, for a single-focused multileaf collimator, lateral penumbra width is leaf position dependent and largely attributed to the leaf end shape. In our study, an analytical method for leaf end induced lateral penumbra modelling is formulated using Tangent Secant Theory. Compared with Monte Carlo simulation and ray tracing algorithm, our model serves well the purpose of cost-efficient penumbra evaluation. Leaf ends represented in parametric forms of circular arc, elliptical arc, Bézier curve, and B-spline are implemented. With biobjective function of penumbra mean and variance introduced, genetic algorithm is carried out for approximating the Pareto frontier. Results show that for circular arc leaf end objective function is convex and convergence to optimal solution is guaranteed using gradient based iterative method. It is found that optimal leaf end in the shape of Bézier curve achieves minimal standard deviation, while using B-spline minimum of penumbra mean is obtained. For treatment modalities in clinical application, optimized leaf ends are in close agreement with actual shapes. Taken together, the method that we propose can provide insight into leaf end shape design of multileaf collimator.

  4. An optimized time varying filtering based empirical mode decomposition method with grey wolf optimizer for machinery fault diagnosis

    Science.gov (United States)

    Zhang, Xin; Liu, Zhiwen; Miao, Qiang; Wang, Lei

    2018-03-01

    A time varying filtering based empirical mode decomposition (EMD) (TVF-EMD) method was proposed recently to solve the mode mixing problem of EMD method. Compared with the classical EMD, TVF-EMD was proven to improve the frequency separation performance and be robust to noise interference. However, the decomposition parameters (i.e., bandwidth threshold and B-spline order) significantly affect the decomposition results of this method. In original TVF-EMD method, the parameter values are assigned in advance, which makes it difficult to achieve satisfactory analysis results. To solve this problem, this paper develops an optimized TVF-EMD method based on grey wolf optimizer (GWO) algorithm for fault diagnosis of rotating machinery. Firstly, a measurement index termed weighted kurtosis index is constructed by using kurtosis index and correlation coefficient. Subsequently, the optimal TVF-EMD parameters that match with the input signal can be obtained by GWO algorithm using the maximum weighted kurtosis index as objective function. Finally, fault features can be extracted by analyzing the sensitive intrinsic mode function (IMF) owning the maximum weighted kurtosis index. Simulations and comparisons highlight the performance of TVF-EMD method for signal decomposition, and meanwhile verify the fact that bandwidth threshold and B-spline order are critical to the decomposition results. Two case studies on rotating machinery fault diagnosis demonstrate the effectiveness and advantages of the proposed method.

  5. Grammar-Based Multi-Frontal Solver for One Dimensional Isogeometric Analysis with Multiple Right-Hand-Sides

    KAUST Repository

    Kuźnik, Krzysztof

    2013-06-01

    This paper introduces a grammar-based model for developing a multi-thread multi-frontal parallel direct solver for one- dimensional isogeometric finite element method. The model includes the integration of B-splines for construction of the element local matrices and the multi-frontal solver algorithm. The integration and the solver algorithm are partitioned into basic indivisible tasks, namely the grammar productions, that can be executed squentially. The partial order of execution of the basic tasks is analyzed to provide the scheduling for the execution of the concurrent integration and multi-frontal solver algo- rithm. This graph grammar analysis allows for optimal concurrent execution of all tasks. The model has been implemented and tested on NVIDIA CUDA GPU, delivering logarithmic execution time for linear, quadratic, cubic and higher order B-splines. Thus, the CUDA implementation delivers the optimal performance predicted by our graph grammar analysis. We utilize the solver for multiple right hand sides related to the solution of non-stationary or inverse problems.

  6. Accuracy improvement of the H-drive air-levitating wafer inspection stage based on error analysis and compensation

    Science.gov (United States)

    Zhang, Fan; Liu, Pinkuan

    2018-04-01

    In order to improve the inspection precision of the H-drive air-bearing stage for wafer inspection, in this paper the geometric error of the stage is analyzed and compensated. The relationship between the positioning errors and error sources are initially modeled, and seven error components are identified that are closely related to the inspection accuracy. The most effective factor that affects the geometric error is identified by error sensitivity analysis. Then, the Spearman rank correlation method is applied to find the correlation between different error components, aiming at guiding the accuracy design and error compensation of the stage. Finally, different compensation methods, including the three-error curve interpolation method, the polynomial interpolation method, the Chebyshev polynomial interpolation method, and the B-spline interpolation method, are employed within the full range of the stage, and their results are compared. Simulation and experiment show that the B-spline interpolation method based on the error model has better compensation results. In addition, the research result is valuable for promoting wafer inspection accuracy and will greatly benefit the semiconductor industry.

  7. Isotropic 3D cardiac cine MRI allows efficient sparse segmentation strategies based on 3D surface reconstruction.

    Science.gov (United States)

    Odille, Freddy; Bustin, Aurélien; Liu, Shufang; Chen, Bailiang; Vuissoz, Pierre-André; Felblinger, Jacques; Bonnemains, Laurent

    2018-05-01

    Segmentation of cardiac cine MRI data is routinely used for the volumetric analysis of cardiac function. Conventionally, 2D contours are drawn on short-axis (SAX) image stacks with relatively thick slices (typically 8 mm). Here, an acquisition/reconstruction strategy is used for obtaining isotropic 3D cine datasets; reformatted slices are then used to optimize the manual segmentation workflow. Isotropic 3D cine datasets were obtained from multiple 2D cine stacks (acquired during free-breathing in SAX and long-axis (LAX) orientations) using nonrigid motion correction (cine-GRICS method) and super-resolution. Several manual segmentation strategies were then compared, including conventional SAX segmentation, LAX segmentation in three views only, and combinations of SAX and LAX slices. An implicit B-spline surface reconstruction algorithm is proposed to reconstruct the left ventricular cavity surface from the sparse set of 2D contours. All tested sparse segmentation strategies were in good agreement, with Dice scores above 0.9 despite using fewer slices (3-6 sparse slices instead of 8-10 contiguous SAX slices). When compared to independent phase-contrast flow measurements, stroke volumes computed from four or six sparse slices had slightly higher precision than conventional SAX segmentation (error standard deviation of 5.4 mL against 6.1 mL) at the cost of slightly lower accuracy (bias of -1.2 mL against 0.2 mL). Functional parameters also showed a trend to improved precision, including end-diastolic volumes, end-systolic volumes, and ejection fractions). The postprocessing workflow of 3D isotropic cardiac imaging strategies can be optimized using sparse segmentation and 3D surface reconstruction. Magn Reson Med 79:2665-2675, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  8. The influence of non-rigid anatomy and patient positioning on endoscopy-CT image registration in the head and neck.

    Science.gov (United States)

    Ingram, W Scott; Yang, Jinzhong; Wendt, Richard; Beadle, Beth M; Rao, Arvind; Wang, Xin A; Court, Laurence E

    2017-08-01

    To assess the influence of non-rigid anatomy and differences in patient positioning between CT acquisition and endoscopic examination on endoscopy-CT image registration in the head and neck. Radiotherapy planning CTs and 31-35 daily treatment-room CTs were acquired for nineteen patients. Diagnostic CTs were acquired for thirteen of the patients. The surfaces of the airways were segmented on all scans and triangular meshes were created to render virtual endoscopic images with a calibrated pinhole model of an endoscope. The virtual images were used to take projective measurements throughout the meshes, with reference measurements defined as those taken on the planning CTs and test measurements defined as those taken on the daily or diagnostic CTs. The influence of non-rigid anatomy was quantified by 3D distance errors between reference and test measurements on the daily CTs, and the influence of patient positioning was quantified by 3D distance errors between reference and test measurements on the diagnostic CTs. The daily CT measurements were also used to investigate the influences of camera-to-surface distance, surface angle, and the interval of time between scans. Average errors in the daily CTs were 0.36 ± 0.61 cm in the nasal cavity, 0.58 ± 0.83 cm in the naso- and oropharynx, and 0.47 ± 0.73 cm in the hypopharynx and larynx. Average errors in the diagnostic CTs in those regions were 0.52 ± 0.69 cm, 0.65 ± 0.84 cm, and 0.69 ± 0.90 cm, respectively. All CTs had errors heavily skewed towards 0, albeit with large outliers. Large camera-to-surface distances were found to increase the errors, but the angle at which the camera viewed the surface had no effect. The errors in the Day 1 and Day 15 CTs were found to be significantly smaller than those in the Day 30 CTs (P positioning have a larger influence than non-rigid anatomy on projective measurement errors. In general, these errors are largest when the camera is in the superior pharynx

  9. Scattered Data Processing Approach Based on Optical Facial Motion Capture

    Directory of Open Access Journals (Sweden)

    Qiang Zhang

    2013-01-01

    Full Text Available In recent years, animation reconstruction of facial expressions has become a popular research field in computer science and motion capture-based facial expression reconstruction is now emerging in this field. Based on the facial motion data obtained using a passive optical motion capture system, we propose a scattered data processing approach, which aims to solve the common problems of missing data and noise. To recover missing data, given the nonlinear relationships among neighbors with the current missing marker, we propose an improved version of a previous method, where we use the motion of three muscles rather than one to recover the missing data. To reduce the noise, we initially apply preprocessing to eliminate impulsive noise, before our proposed three-order quasi-uniform B-spline-based fitting method is used to reduce the remaining noise. Our experiments showed that the principles that underlie this method are simple and straightforward, and it delivered acceptable precision during reconstruction.

  10. Acute high-grade acromioclavicular joint injuries treatment: Arthroscopic non-rigid coracoclavicular fixation provides better quality of life outcomes than hook plate ORIF.

    Science.gov (United States)

    Natera-Cisneros, L; Sarasquete-Reiriz, J; Escolà-Benet, A; Rodriguez-Miralles, J

    2016-02-01

    Treatment of acute high-grade acromioclavicular joint (ACJ) injuries with metal hardware alters the biomechanics of the ACJ, implying a second surgery for hardware removal. The period during which the plate is present involves functional limitations, pain and a risk factor for the development of hardware-related-injuries. Arthroscopy-assisted procedures compared to open-metal hardware techniques offer: less morbidity, the possibility to treat associated lesions and no need for a second operation. The aim was to compare the Quality of life (QoL) of patients with acute high-grade ACJ injuries (Rockwood grade III-V), managed arthroscopically with a non-rigid coracoclavicular (CC) fixation versus the QoL of patients managed with a hook plate, 24 months or more after their shoulder injury. A retrospective revision of high-grade ACJ injuries managed in three institutions was performed. Patients treated by means of an arthroscopy-assisted CC fixation or by means of a hook plate were included. The inclusion period was between 2008 and 2012. The QoL was evaluated at the last follow-up visit by means of the SF36, the visual analog scale (VAS), the Disabilities of the Arm, Shoulder and Hand (DASH) questionnaire, the Constant score and the global satisfaction (scale from 0 to 10). The presence of scapular dyskinesis and remaining vertical instability were evaluated. Comparison between groups was performed. Thirty-one patients were included: 20 arthroscopy-group (ARTH group: 3 Rockwood III, 3 IV and 14 V) and 11 hook plate-group (HOOK group: 5 Rockwood III and 6 V). The mean age was 36 [25-52] year-old for the ARTH group and 41 [19-55] for the HOOK group (P=0.185). The mean results of the questionnaires were: (1) physical SF36 score (ARTH group 58.24±2.16 and HOOK group 53.70±4.33, Pgrade ACJ injuries managed arthroscopically with a non-rigid CC fixation seem to have a better QoL than patients managed with a hook plate. Level IV therapeutic; retrospective comparative study

  11. Variational boundary conditions based on the Nitsche method for fitted and unfitted isogeometric discretizations of the mechanically coupled Cahn-Hilliard equation

    Science.gov (United States)

    Zhao, Ying; Schillinger, Dominik; Xu, Bai-Xiang

    2017-07-01

    The primal variational formulation of the fourth-order Cahn-Hilliard equation requires C1-continuous finite element discretizations, e.g., in the context of isogeometric analysis. In this paper, we explore the variational imposition of essential boundary conditions that arise from the thermodynamic derivation of the Cahn-Hilliard equation in primal variables. Our formulation is based on the symmetric variant of Nitsche's method, does not introduce additional degrees of freedom and is shown to be variationally consistent. In contrast to strong enforcement, the new boundary condition formulation can be naturally applied to any mapped isogeometric parametrization of any polynomial degree. In addition, it preserves full accuracy, including higher-order rates of convergence, which we illustrate for boundary-fitted discretizations of several benchmark tests in one, two and three dimensions. Unfitted Cartesian B-spline meshes constitute an effective alternative to boundary-fitted isogeometric parametrizations for constructing C1-continuous discretizations, in particular for complex geometries. We combine our variational boundary condition formulation with unfitted Cartesian B-spline meshes and the finite cell method to simulate chemical phase segregation in a composite electrode. This example, involving coupling of chemical fields with mechanical stresses on complex domains and coupling of different materials across complex interfaces, demonstrates the flexibility of variational boundary conditions in the context of higher-order unfitted isogeometric discretizations.

  12. Real Time Animation of Trees Based on BBSC in Computer Games

    Directory of Open Access Journals (Sweden)

    Xuefeng Ao

    2009-01-01

    Full Text Available That researchers in the field of computer games usually find it is difficult to simulate the motion of actual 3D model trees lies in the fact that the tree model itself has very complicated structure, and many sophisticated factors need to be considered during the simulation. Though there are some works on simulating 3D tree and its motion, few of them are used in computer games due to the high demand for real-time in computer games. In this paper, an approach of animating trees in computer games based on a novel tree model representation—Ball B-Spline Curves (BBSCs are proposed. By taking advantage of the good features of the BBSC-based model, physical simulation of the motion of leafless trees with wind blowing becomes easier and more efficient. The method can generate realistic 3D tree animation in real-time, which meets the high requirement for real time in computer games.

  13. Isogeometric bending analysis of composite plates based on a higher-order shear deformation theory

    Energy Technology Data Exchange (ETDEWEB)

    Pekovic, Ognjen; Stupar, Slobodan; Simonovic, Aleksandar; Svorcan, Jelena; Komarov, Dragan [University of Belgrade, Belgrade (Serbia)

    2014-08-15

    This research paper presents an isogeometric plate finite element formulation for analysis of thick composite plates. Isogeometric finite element method which is based on non-uniform rational B-splines (NURBS) basis functions, is a novel numerical procedure developed to bridge the gap between CAD and FEM modeling of structures. In order to investigate the behavior of isogeometric plate elements under static loading, plate kinematics is based on third order shear deformation theory (TSDT) of Reddy, which is free from transverse shear locking. This paper discusses accurate transverse stress recovery procedures for TSDT isogeometric finite elements. Numerical experiments with quadratic, cubic and quartic elements are presented and obtained results are compared to other available ones.

  14. Band Structures Analysis Method of Two-Dimensional Phononic Crystals Using Wavelet-Based Elements

    Directory of Open Access Journals (Sweden)

    Mao Liu

    2017-10-01

    Full Text Available A wavelet-based finite element method (WFEM is developed to calculate the elastic band structures of two-dimensional phononic crystals (2DPCs, which are composed of square lattices of solid cuboids in a solid matrix. In a unit cell, a new model of band-gap calculation of 2DPCs is constructed using plane elastomechanical elements based on a B-spline wavelet on the interval (BSWI. Substituting the periodic boundary conditions (BCs and interface conditions, a linear eigenvalue problem dependent on the Bloch wave vector is derived. Numerical examples show that the proposed method performs well for band structure problems when compared with those calculated by traditional FEM. This study also illustrates that filling fractions, material parameters, and incline angles of a 2DPC structure can cause band-gap width and location changes.

  15. A Class of Wavelet-Based Rayleigh-Euler Beam Element for Analyzing Rotating Shafts

    Directory of Open Access Journals (Sweden)

    Jiawei Xiang

    2011-01-01

    Full Text Available A class of wavelet-based Rayleigh-Euler rotating beam element using B-spline wavelets on the interval (BSWI is developed to analyze rotor-bearing system. The effects of translational and rotary inertia, torsion moment, axial displacement, cross-coupled stiffness and damping coefficients of bearings, hysteric and viscous internal damping, gyroscopic moments and bending deformation of the system are included in the computational model. In order to get a generalized formulation of wavelet-based element, each boundary node is collocated six degrees of freedom (DOFs: three translations and three rotations; whereas, each inner node has only three translations. Typical numerical examples are presented to show the accuracy and efficiency of the presented method.

  16. Optimal design of planar slider-crank mechanism using teaching-learning-based optimization algorithm

    International Nuclear Information System (INIS)

    Chaudhary, Kailash; Chaudhary, Himanshu

    2015-01-01

    In this paper, a two stage optimization technique is presented for optimum design of planar slider-crank mechanism. The slider crank mechanism needs to be dynamically balanced to reduce vibrations and noise in the engine and to improve the vehicle performance. For dynamic balancing, minimization of the shaking force and the shaking moment is achieved by finding optimum mass distribution of crank and connecting rod using the equipemental system of point-masses in the first stage of the optimization. In the second stage, their shapes are synthesized systematically by closed parametric curve, i.e., cubic B-spline curve corresponding to the optimum inertial parameters found in the first stage. The multi-objective optimization problem to minimize both the shaking force and the shaking moment is solved using Teaching-learning-based optimization algorithm (TLBO) and its computational performance is compared with Genetic algorithm (GA).

  17. Non-rigid isometric ICP: A practical registration method for the analysis and compensation of form errors in production engineering

    KAUST Repository

    Sacharow, Alexei

    2011-12-01

    The unprecedented success of the iterative closest point (ICP) method for registration in geometry processing and related fields can be attributed to its efficiency, robustness, and wide spectrum of applications. Its use is however quite limited as soon as the objects to be registered arise from each other by a transformation significantly different from a Euclidean motion. We present a novel variant of ICP, tailored for the specific needs of production engineering, which registers a triangle mesh with a second surface model of arbitrary digital representation. Our method inherits most of ICP\\'s practical advantages but is capable of detecting medium-strength bendings i.e. isometric deformations. Initially, the algorithm assigns to all vertices in the source their closest point on the target mesh and then iteratively establishes isometry, a process which, very similar to ICP, requires intermediate re-projections. A NURBS-based technique for applying the resulting deformation to arbitrary instances of the source geometry, other than the very mesh used for correspondence estimation, is described before we present numerical results on synthetic and real data to underline the viability of our approach in comparison with others. © 2011 Elsevier Ltd. All rights reserved.

  18. Surface modeling method for aircraft engine blades by using speckle patterns based on the virtual stereo vision system

    Science.gov (United States)

    Yu, Zhijing; Ma, Kai; Wang, Zhijun; Wu, Jun; Wang, Tao; Zhuge, Jingchang

    2018-03-01

    A blade is one of the most important components of an aircraft engine. Due to its high manufacturing costs, it is indispensable to come up with methods for repairing damaged blades. In order to obtain a surface model of the blades, this paper proposes a modeling method by using speckle patterns based on the virtual stereo vision system. Firstly, blades are sprayed evenly creating random speckle patterns and point clouds from blade surfaces can be calculated by using speckle patterns based on the virtual stereo vision system. Secondly, boundary points are obtained in the way of varied step lengths according to curvature and are fitted to get a blade surface envelope with a cubic B-spline curve. Finally, the surface model of blades is established with the envelope curves and the point clouds. Experimental results show that the surface model of aircraft engine blades is fair and accurate.

  19. Extended Truncated Hierarchical Catmull-Clark Subdivision

    Science.gov (United States)

    2015-05-08

    number of degrees of freedom and reduced continuity (C1 for cubic splines ). THCCS, on the other hand, addresses both local refinement and arbitrary...Catmull-Clark subdivision is a popular quadrilateral-based subdivision scheme that is generalized from mid-knot insertion of bi- cubic B- splines to...hierarchical B- splines [14, 11, 25, 2]. For cubic hierarchical B- splines and Catmull-Clark subdivision, however, such basis-function-refinement needs

  20. Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    DEFF Research Database (Denmark)

    Klein, S.; Loog, M.; Lijn, F. van der

    2010-01-01

    and gender matched healthy controls were selected. Each subject was registered to all other subjects, using a nonrigid registration algorithm. Based on statistics of the deformation field in the brain, a dissimilarity measure was calculated between each pair of subjects, yielding a 58×58 dissimilarity matrix......This article studies the possibility of detecting dementia in an early stage, using nonrigid registration of MR brain scans in combination with dissimilarity-based pattern recognition techniques. Instead of focussing on the shape of a single brain structure, we take into account the shape...... differences within the entire brain. Imaging data was obtained from a longitudinal, population based study of the elderly. A set of 29 subjects was identified, who were asymptomatic at the time of scanning, but were diagnosed as having dementia within 0.7 to 5 years after the scan, and a set of 29 age...

  1. A Hybrid Technique Based on the Combination of Multilevel Fast Multipole Algorithm and the Geometrical Theory of Diffraction

    Directory of Open Access Journals (Sweden)

    María-Jesús Algar

    2014-01-01

    Full Text Available This paper proposes a hybrid technique for treating electromagnetic problems of scattering and radiation in which the source structure is described as an array of antennas. This strategy is based on the combination of the rigorous method multilevel fast multipole algorithm (MLFMA and the high frequency technique geometrical theory of diffraction (GTD. Thanks to the use of MLFMA, the source can be discretized into several cubic regions considering each of them as a source point in order to reduce the number of times required to compute the ray tracing when GTD is applied to obtain the scatter field. In this analysis, objects with complex shapes are described by using nonuniform rational B-splines (NURBS which is a very common way to model geometrical bodies. Numerical results that demonstrate the accuracy and efficiency in terms of CPU time are shown.

  2. Tensor-based morphometry with mappings parameterized by stationary velocity fields in Alzheimer's disease neuroimaging initiative.

    Science.gov (United States)

    Bossa, Matías Nicolás; Zacur, Ernesto; Olmos, Salvador

    2009-01-01

    Tensor-based morphometry (TBM) is an analysis technique where anatomical information is characterized by means of the spatial transformations between a customized template and observed images. Therefore, accurate inter-subject non-rigid registration is an essential prerrequisite. Further statistical analysis of the spatial transformations is used to highlight some useful information, such as local statistical differences among populations. With the new advent of recent and powerful non-rigid registration algorithms based on the large deformation paradigm, TBM is being increasingly used. In this work we evaluate the statistical power of TBM using stationary velocity field diffeomorphic registration in a large population of subjects from Alzheimer's Disease Neuroimaging Initiative project. The proposed methodology provided atrophy maps with very detailed anatomical resolution and with a high significance compared with results published recently on the same data set.

  3. Radiotherapy of Hodgkin and Non-Hodgkin Lymphoma: A Nonrigid Image-Based Registration Method for Automatic Localization of Prechemotherapy Gross Tumor Volume.

    Science.gov (United States)

    Zaffino, P; Ciardo, D; Piperno, G; Travaini, L L; Comi, S; Ferrari, A; Alterio, D; Jereczek-Fossa, B A; Orecchia, R; Baroni, G; Spadea, M F

    2016-04-01

    To improve the contouring of clinical target volume for the radiotherapy of neck Hodgkin/non-Hodgkin lymphoma by localizing the prechemotherapy gross target volume onto the simulation computed tomography using [18F]-fluorodeoxyglucose positron emission tomography/computed tomography. The gross target volume delineated on prechemotherapy [18F]-fluorodeoxyglucose positron emission tomography/computed tomography images was warped onto simulation computed tomography using deformable image registration. Fifteen patients with neck Hodgkin/non-Hodgkin lymphoma were analyzed. Quality of image registration was measured by computing the Dice similarity coefficient on warped organs at risk. Five radiation oncologists visually scored the localization of automatic gross target volume, ranking it from 1 (wrong) to 5 (excellent). Deformable registration was compared to rigid registration by computing the overlap index between the automatic gross target volume and the planned clinical target volume and quantifying the V95 coverage. The Dice similarity coefficient was 0.80 ± 0.07 (median ± quartiles). The physicians' survey had a median score equal to 4 (good). By comparing the rigid versus deformable registration, the overlap index increased from a factor of about 4 and the V95 (percentage of volume receiving the 95% of the prescribed dose) went from 0.84 ± 0.38 to 0.99 ± 0.10 (median ± quartiles). This study demonstrates the impact of using deformable registration between prechemotherapy [18F]-fluorodeoxyglucose positron emission tomography/computed tomography and simulation computed tomography, in order to automatically localize the gross target volume for radiotherapy treatment of patients with Hodgkin/non-Hodgkin lymphoma. © The Author(s) 2015.

  4. Craniofacial statistical deformation models of wild-type mice and Crouzon mice

    Science.gov (United States)

    Ólafsdóttir, Hildur; Darvann, Tron A.; Ersbøll, Bjarne K.; Hermann, Nuno V.; Oubel, Estanislao; Larsen, Rasmus; Frangi, Alejandro F.; Larsen, Per; Perlyn, Chad A.; Morriss-Kay, Gillian M.; Kreiborg, Sven

    2007-03-01

    Crouzon syndrome is characterised by premature fusion of cranial sutures and synchondroses leading to craniofacial growth disturbances. The gene causing the syndrome was discovered approximately a decade ago and recently the first mouse model of the syndrome was generated. In this study, a set of Micro CT scans of the heads of wild-type (normal) mice and Crouzon mice were investigated. Statistical deformation models were built to assess the anatomical differences between the groups, as well as the within-group anatomical variation. Following the approach by Rueckert et al. we built an atlas using B-spline-based nonrigid registration and subsequently, the atlas was nonrigidly registered to the cases being modelled. The parameters of these registrations were then used as input to a PCA. Using different sets of registration parameters, different models were constructed to describe (i) the difference between the two groups in anatomical variation and (ii) the within-group variation. These models confirmed many known traits in the wild-type and Crouzon mouse craniofacial anatomy. However, they also showed some new traits.

  5. 4D ultrasound and 3D MRI registration of beating heart

    International Nuclear Information System (INIS)

    Herlambang, N.; Matsumiya, K.; Masamune, K.; Dohi, T.; Liao, H.; Tsukihara, H.; Takamoto, S.

    2007-01-01

    To realize intra-cardiac surgery without cardio-pulmonary bypass, a medical imaging technique with both high image quality and data acquisition rate that is fast enough to follow heart beat movements is required. In this research, we proposed a method that utilized the image quality of MRI and the speed of ultrasound. We developed a 4D image reconstruction method using image registration of 3D MRI and 4D ultrasound images. The registration method consists of rigid registration between 3D MRI and 3D ultrasound with the same heart beat phase, and non-rigid registration between 3D ultrasound images from different heart beat phases. Non-rigid registration was performed with B-spline based registration using variable spring model. In phantom experiment using balloon phantom, registration accuracy was less than 2 mm for total heart volume variation range of 10%. We applied our registration method on 3D MRI and 4D ultrasound images of a volunteer's beating heart data and confirmed through visual observation that heart beat pattern was well reproduced. (orig.)

  6. Validation of experts versus atlas-based and automatic registration methods for subthalamic nucleus targeting on MRI

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez Castro, F.J.; Cuisenaire, O.; Thiran, J.P. [Ecole Polytechnique Federale de Lausanne (EPFL) (Switzerland). Signal Processing Inst.; Pollo, C. [Ecole Polytechnique Federale de Lausanne (EPFL) (Switzerland). Signal Processing Inst.; Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne (Switzerland). Dept. of Neurosurgery; Villemure, J.G. [Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne (Switzerland). Dept. of Neurosurgery

    2006-03-15

    Objects: In functional stereotactic neurosurgery, one of the cornerstones upon which the success and the operating time depends is an accurate targeting. The subthalamic nucleus (STN) is the usual target involved when applying deep brain stimulation for Parkinson's disease (PD). Unfortunately, STN is usually not clearly visible in common medical imaging modalities, which justifies the use of atlas-based segmentation techniques to infer the STN location. Materials and methods: Eight bilaterally implanted PD patients were included in this study. A three-dimensional T1-weighted sequence and inversion recovery T2-weighted coronal slices were acquired pre-operatively. We propose a methodology for the construction of a ground truth of the STN location and a scheme that allows both, to perform a comparison between different non-rigid registration algorithms and to evaluate their usability to locate the STN automatically. Results: The intra-expert variability in identifying the STN location is 1.06{+-}0.61 mm while the best non-rigid registration method gives an error of 1.80{+-}0.62 mm. On the other hand, statistical tests show that an affine registration with only 12 degrees of freedom is not enough for this application. Conclusions: Using our validation-evaluation scheme, we demonstrate that automatic STN localization is possible and accurate with non-rigid registration algorithms. (orig.)

  7. Parameter tuning for the NFFT based fast Ewald summation

    Directory of Open Access Journals (Sweden)

    Franziska Nestler

    2016-07-01

    Full Text Available The computation of the Coulomb potentials and forces in charged particle systems under 3d-periodic boundary conditionsis possible in an efficient way by utilizing the Ewald summation formulas and applying the fast Fourier transform (FFT. In this paper we consider the particle-particle NFFT (P$^2$NFFT approach, which is based on the fast Fourier transform for nonequispaced data (NFFT and compare the error behaviors regarding different window functions, which are used in order to approximate the given continuous charge distribution by a mesh based charge density. Typically B-splines are applied in the scope of particle mesh methods, as for instance within the well known particle-particle particle-mesh (P$^3$M algorithm. The publicly available P$^2$NFFT algorithm allows the application of an oversampled FFT as well as the usage of different window functions. We consider for the first time also an approximation by Bessel functions and show how the resulting root mean square errors in the forces can be predicted precisely and efficiently. The results show that, if the parameters are tuned appropriately, the Bessel window function is in many cases even the better choice in terms of computational costs. Moreover, the results indicate that it is often advantageous in terms of efficiency to spend some oversampling within the NFFT while using a window function with a smaller support.

  8. Parameter tuning for the NFFT based fast Ewald summation

    Science.gov (United States)

    Nestler, Franziska

    2016-07-01

    The computation of the Coulomb potentials and forces in charged particle systems under 3d-periodic boundary conditions is possible in an efficient way by utilizing the Ewald summation formulas and applying the fast Fourier transform (FFT). In this paper we consider the particle-particle NFFT (P^2NFFT) approach, which is based on the fast Fourier transform for nonequispaced data (NFFT) and compare the error behaviors regarding different window functions, which are used in order to approximate the given continuous charge distribution by a mesh based charge density. Typically B-splines are applied in the scope of particle mesh methods, as for instance within the well known particle-particle particle-mesh (P^3M) algorithm. The publicly available P^2NFFT algorithm allows the application of an oversampled FFT as well as the usage of different window functions. We consider for the first time also an approximation by Bessel functions and show how the resulting root mean square errors in the forces can be predicted precisely and efficiently. The results show that, if the parameters are tuned appropriately, the Bessel window function is in many cases even the better choice in terms of computational costs. Moreover, the results indicate that it is often advantageous in terms of efficiency to spend some oversampling within the NFFT while using a window function with a smaller support.

  9. [Modeling the eye based on simulated refractive surgery].

    Science.gov (United States)

    Lamard, M; Cochener, B

    2001-10-01

    To achieve three-dimensional modelizing of the eyeball (morphological and mechanical behavior) in order to simulate the impact of various refractive surgery techniques and to study the normal and pathological states of the eye. Rebuilding the ocular shell is based on different kinds of imaging (MRI, ultrasound) including information provided by video topography. Image data are treated using suitable numerized filters that allow automatic segmentations of ocular globus edges. Reconstruction is based on specific mathematical functions (B-splines). The mechanical behavior of a reconstructed model is simulated by solving equations of linearized elasticity with the finitude elements method. Numerous simulations mimmed different refractive surgical techniques and, then validated the model. In addition, simulations of various pathologies allowed us to verify certain clinical hypotheses. This work, although still experimental, demonstrates the advantages of such simulations and will allow novice physicians an easier approach to different surgical techniques and will help them understand their effect. Furthermore, it might be useful for simulation of new surgical concepts even before their in vivo evaluation.

  10. ASM Based Synthesis of Handwritten Arabic Text Pages

    Directory of Open Access Journals (Sweden)

    Laslo Dinges

    2015-01-01

    Full Text Available Document analysis tasks, as text recognition, word spotting, or segmentation, are highly dependent on comprehensive and suitable databases for training and validation. However their generation is expensive in sense of labor and time. As a matter of fact, there is a lack of such databases, which complicates research and development. This is especially true for the case of Arabic handwriting recognition, that involves different preprocessing, segmentation, and recognition methods, which have individual demands on samples and ground truth. To bypass this problem, we present an efficient system that automatically turns Arabic Unicode text into synthetic images of handwritten documents and detailed ground truth. Active Shape Models (ASMs based on 28046 online samples were used for character synthesis and statistical properties were extracted from the IESK-arDB database to simulate baselines and word slant or skew. In the synthesis step ASM based representations are composed to words and text pages, smoothed by B-Spline interpolation and rendered considering writing speed and pen characteristics. Finally, we use the synthetic data to validate a segmentation method. An experimental comparison with the IESK-arDB database encourages to train and test document analysis related methods on synthetic samples, whenever no sufficient natural ground truthed data is available.

  11. ASM Based Synthesis of Handwritten Arabic Text Pages.

    Science.gov (United States)

    Dinges, Laslo; Al-Hamadi, Ayoub; Elzobi, Moftah; El-Etriby, Sherif; Ghoneim, Ahmed

    2015-01-01

    Document analysis tasks, as text recognition, word spotting, or segmentation, are highly dependent on comprehensive and suitable databases for training and validation. However their generation is expensive in sense of labor and time. As a matter of fact, there is a lack of such databases, which complicates research and development. This is especially true for the case of Arabic handwriting recognition, that involves different preprocessing, segmentation, and recognition methods, which have individual demands on samples and ground truth. To bypass this problem, we present an efficient system that automatically turns Arabic Unicode text into synthetic images of handwritten documents and detailed ground truth. Active Shape Models (ASMs) based on 28046 online samples were used for character synthesis and statistical properties were extracted from the IESK-arDB database to simulate baselines and word slant or skew. In the synthesis step ASM based representations are composed to words and text pages, smoothed by B-Spline interpolation and rendered considering writing speed and pen characteristics. Finally, we use the synthetic data to validate a segmentation method. An experimental comparison with the IESK-arDB database encourages to train and test document analysis related methods on synthetic samples, whenever no sufficient natural ground truthed data is available.

  12. Non-Fourier based thermal-mechanical tissue damage prediction for thermal ablation.

    Science.gov (United States)

    Li, Xin; Zhong, Yongmin; Smith, Julian; Gu, Chengfan

    2017-01-02

    Prediction of tissue damage under thermal loads plays important role for thermal ablation planning. A new methodology is presented in this paper by combing non-Fourier bio-heat transfer, constitutive elastic mechanics as well as non-rigid motion of dynamics to predict and analyze thermal distribution, thermal-induced mechanical deformation and thermal-mechanical damage of soft tissues under thermal loads. Simulations and comparison analysis demonstrate that the proposed methodology based on the non-Fourier bio-heat transfer can account for the thermal-induced mechanical behaviors of soft tissues and predict tissue thermal damage more accurately than classical Fourier bio-heat transfer based model.

  13. AN AERIAL-IMAGE DENSE MATCHING APPROACH BASED ON OPTICAL FLOW FIELD

    Directory of Open Access Journals (Sweden)

    W. Yuan

    2016-06-01

    Full Text Available Dense matching plays an important role in many fields, such as DEM (digital evaluation model producing, robot navigation and 3D environment reconstruction. Traditional approaches may meet the demand of accuracy. But the calculation time and out puts density is hardly be accepted. Focus on the matching efficiency and complex terrain surface matching feasibility an aerial image dense matching method based on optical flow field is proposed in this paper. First, some high accurate and uniformed control points are extracted by using the feature based matching method. Then the optical flow is calculated by using these control points, so as to determine the similar region between two images. Second, the optical flow field is interpolated by using the multi-level B-spline interpolation in the similar region and accomplished the pixel by pixel coarse matching. Final, the results related to the coarse matching refinement based on the combined constraint, which recognizes the same points between images. The experimental results have shown that our method can achieve per-pixel dense matching points, the matching accuracy achieves sub-pixel level, and fully meet the three-dimensional reconstruction and automatic generation of DSM-intensive matching’s requirements. The comparison experiments demonstrated that our approach’s matching efficiency is higher than semi-global matching (SGM and Patch-based multi-view stereo matching (PMVS which verifies the feasibility and effectiveness of the algorithm.

  14. Improvement of in vivo quantification of [123I]-Iodobenzovesamicol in single-photon emission computed tomography/computed tomography using anatomic image to brain atlas nonrigid registration.

    Science.gov (United States)

    Lamare, Frederic; Mazere, Joachim; Attila, Mathieu; Mayo, Willy; De Clermont-Gallerande, Henri; Meissner, Wassilios; Fernandez, Philippe; Allard, Michele

    2013-01-01

    Brain anatomy variability is a major problem in quantifying functional images in nuclear medicine, in particular relative to aging and neurodegenerative diseases. The aim of this study was to compare affine and elastic model-based methods for magnetic resonance imaging (MRI) to brain atlas registration and to assess their impact on the quantification of cholinergic neurotransmission. Patients with multiple system atrophy (MSA) and age-matched healthy subjects underwent an MRI and a single-photon emission computed tomographic (SPECT) examination using [123I]-iodobenzovesamicol (IBVM). Both affine and elastic methods were compared to register the subjects' MRI with the Montreal Neurological Institute brain atlas. Performance of the registration accuracy was quantitatively assessed and the impact on the IBVM quantification was studied. For both subject groups, elastic registration achieved better quantitative performance compared to the affine model. For patients suffering from neurogenerative disease, this study demonstrates the importance and relevance of MRI to atlas registration in quantification of neuronal integrity. In this context, in comparison with rigid registrations, an elastic model-based registration provides the best relocation of the brain structures to the atlas for accurately quantifying cholinergic neurotransmission.

  15. On the use of nonrigid-molecular symmetry in nuclear motion computations employing a discrete variable representation: A case study of the bending energy levels of CH5.

    Science.gov (United States)

    Fábri, Csaba; Quack, Martin; Császár, Attila G

    2017-10-07

    A discrete-variable-representation-based symmetry adaptation algorithm is presented and implemented in the fourth-age quantum-chemical rotational-vibrational code GENIUSH. The utility of the symmetry-adapted version of GENIUSH is demonstrated by the computation of seven-dimensional bend-only vibrational and rovibrational eigenstates of the highly fluxionally symmetric CH 5 + molecular ion, a prototypical astructural system. While the numerical results obtained and the symmetry labels of the computed rovibrational states of CH 5 + are of considerable utility by themselves, it must also be noted that the present study confirms that the nearly unconstrained motion of the five hydrogen atoms orbiting around the central carbon atom results in highly complex rotational-vibrational quantum dynamics and renders the understanding of the high-resolution spectra of CH 5 + extremely challenging.

  16. Selecting registration schemes in case of interstitial lung disease follow-up in CT

    International Nuclear Information System (INIS)

    Vlachopoulos, Georgios; Korfiatis, Panayiotis; Skiadopoulos, Spyros; Kazantzi, Alexandra; Kalogeropoulou, Christina; Pratikakis, Ioannis; Costaridou, Lena

    2015-01-01

    Purpose: Primary goal of this study is to select optimal registration schemes in the framework of interstitial lung disease (ILD) follow-up analysis in CT. Methods: A set of 128 multiresolution schemes composed of multiresolution nonrigid and combinations of rigid and nonrigid registration schemes are evaluated, utilizing ten artificially warped ILD follow-up volumes, originating from ten clinical volumetric CT scans of ILD affected patients, to select candidate optimal schemes. Specifically, all combinations of four transformation models (three rigid: rigid, similarity, affine and one nonrigid: third order B-spline), four cost functions (sum-of-square distances, normalized correlation coefficient, mutual information, and normalized mutual information), four gradient descent optimizers (standard, regular step, adaptive stochastic, and finite difference), and two types of pyramids (recursive and Gaussian-smoothing) were considered. The selection process involves two stages. The first stage involves identification of schemes with deformation field singularities, according to the determinant of the Jacobian matrix. In the second stage, evaluation methodology is based on distance between corresponding landmark points in both normal lung parenchyma (NLP) and ILD affected regions. Statistical analysis was performed in order to select near optimal registration schemes per evaluation metric. Performance of the candidate registration schemes was verified on a case sample of ten clinical follow-up CT scans to obtain the selected registration schemes. Results: By considering near optimal schemes common to all ranking lists, 16 out of 128 registration schemes were initially selected. These schemes obtained submillimeter registration accuracies in terms of average distance errors 0.18 ± 0.01 mm for NLP and 0.20 ± 0.01 mm for ILD, in case of artificially generated follow-up data. Registration accuracy in terms of average distance error in clinical follow-up data was in the

  17. Selecting registration schemes in case of interstitial lung disease follow-up in CT

    Energy Technology Data Exchange (ETDEWEB)

    Vlachopoulos, Georgios; Korfiatis, Panayiotis; Skiadopoulos, Spyros; Kazantzi, Alexandra [Department of Medical Physics, School of Medicine,University of Patras, Patras 26504 (Greece); Kalogeropoulou, Christina [Department of Radiology, School of Medicine, University of Patras, Patras 26504 (Greece); Pratikakis, Ioannis [Department of Electrical and Computer Engineering, Democritus University of Thrace, Xanthi 67100 (Greece); Costaridou, Lena, E-mail: costarid@upatras.gr [Department of Medical Physics, School of Medicine, University of Patras, Patras 26504 (Greece)

    2015-08-15

    Purpose: Primary goal of this study is to select optimal registration schemes in the framework of interstitial lung disease (ILD) follow-up analysis in CT. Methods: A set of 128 multiresolution schemes composed of multiresolution nonrigid and combinations of rigid and nonrigid registration schemes are evaluated, utilizing ten artificially warped ILD follow-up volumes, originating from ten clinical volumetric CT scans of ILD affected patients, to select candidate optimal schemes. Specifically, all combinations of four transformation models (three rigid: rigid, similarity, affine and one nonrigid: third order B-spline), four cost functions (sum-of-square distances, normalized correlation coefficient, mutual information, and normalized mutual information), four gradient descent optimizers (standard, regular step, adaptive stochastic, and finite difference), and two types of pyramids (recursive and Gaussian-smoothing) were considered. The selection process involves two stages. The first stage involves identification of schemes with deformation field singularities, according to the determinant of the Jacobian matrix. In the second stage, evaluation methodology is based on distance between corresponding landmark points in both normal lung parenchyma (NLP) and ILD affected regions. Statistical analysis was performed in order to select near optimal registration schemes per evaluation metric. Performance of the candidate registration schemes was verified on a case sample of ten clinical follow-up CT scans to obtain the selected registration schemes. Results: By considering near optimal schemes common to all ranking lists, 16 out of 128 registration schemes were initially selected. These schemes obtained submillimeter registration accuracies in terms of average distance errors 0.18 ± 0.01 mm for NLP and 0.20 ± 0.01 mm for ILD, in case of artificially generated follow-up data. Registration accuracy in terms of average distance error in clinical follow-up data was in the

  18. Preform design optimization for forging process based on the topological approach

    Science.gov (United States)

    Shao, Yong; Lu, Bin; Ou, Hengan; Cui, Zhenshan

    2013-05-01

    Preform design plays an important role in forging design especially for parts with complex shapes. In this paper, an attempt was made to develop a topological approach in the preform design of bulk metal forming processes based on the Bi-direction evolutionary structural optimization (BESO) strategy. In this approach, a new element addition and removal criteria based on the equivalent strain have been proposed for evaluating and optimizing the material flow in the forging process. To obtain a smooth preform boundary, a closed B-spline curve based on the least square approximation algorithm is employed to approximate the uneven surface of updated preform. An inhouse developed C♯ program has been employed to integrate the FE simluation, shape optimsation and surface approximation process. A 2D blade forging perform design problem are evaluate using the developed method. The results suggest that the optimized preform has shown better performance in improving the material flow and deformation uniformity during the forging. The results also demonstrate the robustness and efficiency of the developed preform design optimization method.

  19. A Novel Algorithm for Satellite Images Fusion Based on Compressed Sensing and PCA

    Directory of Open Access Journals (Sweden)

    Wenkao Yang

    2013-01-01

    Full Text Available This paper studies the image fusion of high-resolution panchromatic image and low-resolution multispectral image. Based on the classic fusion algorithms on remote sensing image fusion, the PCA (principal component analysis transform, and discrete wavelet transform, we carry out in-depth research. The compressed sensing (CS abandons the full sample and shifts the sampling of the signal to sampling information that greatly reduces the potential consumption of traditional signal acquisition and processing. We combine compressed sensing with satellite remote sensing image fusion algorithm and propose an innovative fusion algorithm (CS-FWT-PCA, in which the symmetric fractional B-spline wavelet acts as the sparse base. In the algorithm we use Hama Da matrix as the measurement matrix and SAMP as the reconstruction algorithm and adopt an improved fusion rule based on the local variance. The simulation results show that the CS-FWT-PCA fusion algorithm achieves better fusion effect than the traditional fusion method.

  20. ACSYNT - A standards-based system for parametric, computer aided conceptual design of aircraft

    Science.gov (United States)

    Jayaram, S.; Myklebust, A.; Gelhausen, P.

    1992-01-01

    A group of eight US aerospace companies together with several NASA and NAVY centers, led by NASA Ames Systems Analysis Branch, and Virginia Tech's CAD Laboratory agreed, through the assistance of Americal Technology Initiative, in 1990 to form the ACSYNT (Aircraft Synthesis) Institute. The Institute is supported by a Joint Sponsored Research Agreement to continue the research and development in computer aided conceptual design of aircraft initiated by NASA Ames Research Center and Virginia Tech's CAD Laboratory. The result of this collaboration, a feature-based, parametric computer aided aircraft conceptual design code called ACSYNT, is described. The code is based on analysis routines begun at NASA Ames in the early 1970's. ACSYNT's CAD system is based entirely on the ISO standard Programmer's Hierarchical Interactive Graphics System and is graphics-device independent. The code includes a highly interactive graphical user interface, automatically generated Hermite and B-Spline surface models, and shaded image displays. Numerous features to enhance aircraft conceptual design are described.

  1. Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease

    Directory of Open Access Journals (Sweden)

    Denis P Shamonin

    2014-01-01

    Full Text Available Nonrigid image registration is an important, but time-consuming taskin medical image analysis. In typical neuroimaging studies, multipleimage registrations are performed, i.e. for atlas-based segmentationor template construction. Faster image registration routines wouldtherefore be beneficial.In this paper we explore acceleration of the image registrationpackage elastix by a combination of several techniques: iparallelization on the CPU, to speed up the cost function derivativecalculation; ii parallelization on the GPU building on andextending the OpenCL framework from ITKv4, to speed up the Gaussianpyramid computation and the image resampling step; iii exploitationof certain properties of the B-spline transformation model; ivfurther software optimizations.The accelerated registration tool is employed in a study ondiagnostic classification of Alzheimer's disease and cognitivelynormal controls based on T1-weighted MRI. We selected 299participants from the publicly available Alzheimer's DiseaseNeuroimaging Initiative database. Classification is performed with asupport vector machine based on gray matter volumes as a marker foratrophy. We evaluated two types of strategies (voxel-wise andregion-wise that heavily rely on nonrigid image registration.Parallelization and optimization resulted in an acceleration factorof 4-5x on an 8-core machine. Using OpenCL a speedup factor of ~2was realized for computation of the Gaussian pyramids, and 15-60 forthe resampling step, for larger images. The voxel-wise and theregion-wise classification methods had an area under thereceiver operator characteristic curve of 88% and 90%,respectively, both for standard and accelerated registration.We conclude that the image registration package elastix wassubstantially accelerated, with nearly identical results to thenon-optimized version. The new functionality will become availablein the next release of elastix as open source under the BSD license.

  2. The evaluation of a population based diffusion tensor image atlas using a ground truth method

    Science.gov (United States)

    Van Hecke, Wim; Leemans, Alexander; D'Agostino, Emiliano; De Backer, Steve; Vandervliet, Evert; Parizel, Paul M.; Sijbers, Jan

    2008-03-01

    Purpose: Voxel based morphometry (VBM) is increasingly being used to detect diffusion tensor (DT) image abnormalities in patients for different pathologies. An important requisite for these VBM studies is the use of a high-dimensional, non-rigid coregistration technique, which is able to align both the spatial and the orientational information. Recent studies furthermore indicate that high-dimensional DT information should be included during coregistration for an optimal alignment. In this context, a population based DTI atlas is created that preserves the orientational DT information robustly and contains a minimal bias towards any specific individual data set. Methods: A ground truth evaluation method is developed using a single subject DT image that is deformed with 20 deformation fields. Thereafter, an atlas is constructed based on these 20 resulting images. Thereby, the non-rigid coregistration algorithm is based on a viscous fluid model and on mutual information. The fractional anisotropy (FA) maps as well as the DT elements are used as DT image information during the coregistration algorithm, in order to minimize the orientational alignment inaccuracies. Results: The population based DT atlas is compared with the ground truth image using accuracy and precision measures of spatial and orientational dependent metrics. Results indicate that the population based atlas preserves the orientational information in a robust way. Conclusion: A subject independent population based DT atlas is constructed and evaluated with a ground truth method. This atlas contains all available orientational information and can be used in future VBM studies as a reference system.

  3. A NURBS-based finite element model applied to geometrically nonlinear elastodynamics using a corotational approach

    KAUST Repository

    Espath, L. F R

    2015-02-03

    A numerical model to deal with nonlinear elastodynamics involving large rotations within the framework of the finite element based on NURBS (Non-Uniform Rational B-Spline) basis is presented. A comprehensive kinematical description using a corotational approach and an orthogonal tensor given by the exact polar decomposition is adopted. The state equation is written in terms of corotational variables according to the hypoelastic theory, relating the Jaumann derivative of the Cauchy stress to the Eulerian strain rate.The generalized-α method (Gα) method and Generalized Energy-Momentum Method with an additional parameter (GEMM+ξ) are employed in order to obtain a stable and controllable dissipative time-stepping scheme with algorithmic conservative properties for nonlinear dynamic analyses.The main contribution is to show that the energy-momentum conservation properties and numerical stability may be improved once a NURBS-based FEM in the spatial discretization is used. Also it is shown that high continuity can postpone the numerical instability when GEMM+ξ with consistent mass is employed; likewise, increasing the continuity class yields a decrease in the numerical dissipation. A parametric study is carried out in order to show the stability and energy budget in terms of several properties such as continuity class, spectral radius and lumped as well as consistent mass matrices.

  4. The role of continuity in residual-based variational multiscale modeling of turbulence

    Science.gov (United States)

    Akkerman, I.; Bazilevs, Y.; Calo, V. M.; Hughes, T. J. R.; Hulshoff, S.

    2008-02-01

    This paper examines the role of continuity of the basis in the computation of turbulent flows. We compare standard finite elements and non-uniform rational B-splines (NURBS) discretizations that are employed in Isogeometric Analysis (Hughes et al. in Comput Methods Appl Mech Eng, 194:4135 4195, 2005). We make use of quadratic discretizations that are C 0-continuous across element boundaries in standard finite elements, and C 1-continuous in the case of NURBS. The variational multiscale residual-based method (Bazilevs in Isogeometric analysis of turbulence and fluid-structure interaction, PhD thesis, ICES, UT Austin, 2006; Bazilevs et al. in Comput Methods Appl Mech Eng, submitted, 2007; Calo in Residual-based multiscale turbulence modeling: finite volume simulation of bypass transition. PhD thesis, Department of Civil and Environmental Engineering, Stanford University, 2004; Hughes et al. in proceedings of the XXI international congress of theoretical and applied mechanics (IUTAM), Kluwer, 2004; Scovazzi in Multiscale methods in science and engineering, PhD thesis, Department of Mechanical Engineering, Stanford Universty, 2004) is employed as a turbulence modeling technique. We find that C 1-continuous discretizations outperform their C 0-continuous counterparts on a per-degree-of-freedom basis. We also find that the effect of continuity is greater for higher Reynolds number flows.

  5. COLLINARUS: collection of image-derived non-linear attributes for registration using splines

    Science.gov (United States)

    Chappelow, Jonathan; Bloch, B. Nicolas; Rofsky, Neil; Genega, Elizabeth; Lenkinski, Robert; DeWolf, William; Viswanath, Satish; Madabhushi, Anant

    2009-02-01

    extent. The set of synthetic multiprotocol images, acquired from the BrainWeb Simulated Brain Database, comprises 11 pairs of T1-w and proton density (PD) MRI of the brain. Following the application of a known warping to misalign the images, non-rigid registration was then performed to recover the original, correct alignment of each image pair. Quantitative evaluation of brain registration was performed by direct comparison of (1) the recovered deformation field to the applied field and (2) the original undeformed and recovered PD MRI. For each of the data sets, COLLINARUS is compared with the MI-driven counterpart of the B-spline technique. In each of the quantitative experiments, registration accuracy was found to be significantly (p compared with MI-driven B-spline registration. Over 11 slices, the mean absolute error in the deformation field recovered by COLLINARUS was found to be 0.8830 mm.

  6. Nonrigid registration of myocardial perfusion MRI

    DEFF Research Database (Denmark)

    Ólafsdóttir, Hildur

    2005-01-01

    This paper describes a fully automatic registration of 10 multi-slice myocardial perfusion magnetic resonance image sequences. The registration of these sequences is crucial for the clinical interpretation, which currently is subjected to manual labour. The approach used in this study is a nonrig...

  7. Brownian Warps for Non-Rigid Registration

    DEFF Research Database (Denmark)

    Nielsen, Mads; Johansen, Peter; Jackson, Andrew D.

    2008-01-01

    prior, we formulate a Partial Differential Equation for obtaining the maximally likely warp given matching constraints derived from the images. We solve for the free boundary conditions, and the bias toward smaller areas in the finite domain setting. Furthermore, we demonstrate the technique on 2D...... images, and show that the obtained warps are also in practice source-destination symmetric and in an example on X-ray spine registration provides extrapolations from landmark point superior to those of spline solutions. Udgivelsesdato: July...

  8. 3-D Numerical Simulation and Analysis of Complex Fiber Geometry RaFC Materials with High Volume Fraction and High Aspect Ratio based on ABAQUS PYTHON

    Science.gov (United States)

    Jin, BoCheng

    2011-12-01

    Organic and inorganic fiber reinforced composites with innumerable fiber orientation distributions and fiber geometries are abundantly available in several natural and synthetic structures. Inorganic glass fiber composites have been introduced to numerous applications due to their economical fabrication and tailored structural properties. Numerical characterization of such composite material systems is necessitated due to their intrinsic statistical nature, which renders extensive experimentation prohibitively time consuming and costly. To predict various mechanical behavior and characterizations of Uni-Directional Fiber Composites (UDFC) and Random Fiber Composites (RaFC), we numerically developed Representative Volume Elements (RVE) with high accuracy and efficiency and with complex fiber geometric representations encountered in uni-directional and random fiber networks. In this thesis, the numerical simulations of unidirectional RaFC fiber strand RVE models (VF>70%) are first presented by programming in ABAQUS PYTHON. Secondly, when the cross sectional aspect ratios (AR) of the second phase fiber inclusions are not necessarily one, various types of RVE models with different cross sectional shape fibers are simulated and discussed. A modified random sequential absorption algorithm is applied to enhance the volume fraction number (VF) of the RVE, which the mechanical properties represents the composite material. Thirdly, based on a Spatial Segment Shortest Distance (SSSD) algorithm, a 3-Dimentional RaFC material RVE model is simulated in ABAQUS PYTHON with randomly oriented and distributed straight fibers of high fiber aspect ratio (AR=100:1) and volume fraction (VF=31.8%). Fourthly, the piecewise multi-segments fiber geometry is obtained in MATLAB environment by a modified SSSD algorithm. Finally, numerical methods including the polynomial curve fitting and piecewise quadratic and cubic B-spline interpolation are applied to optimize the RaFC fiber geometries

  9. MRF-based deformable registration and ventilation estimation of lung CT.

    Science.gov (United States)

    Heinrich, Mattias P; Jenkinson, Mark; Brady, Michael; Schnabel, Julia A

    2013-07-01

    Deformable image registration is an important tool in medical image analysis. In the case of lung computed tomography (CT) registration there are three major challenges: large motion of small features, sliding motions between organs, and changing image contrast due to compression. Recently, Markov random field (MRF)-based discrete optimization strategies have been proposed to overcome problems involved with continuous optimization for registration, in particular its susceptibility to local minima. However, to date the simplifications made to obtain tractable computational complexity reduced the registration accuracy. We address these challenges and preserve the potentially higher quality of discrete approaches with three novel contributions. First, we use an image-derived minimum spanning tree as a simplified graph structure, which copes well with the complex sliding motion and allows us to find the global optimum very efficiently. Second, a stochastic sampling approach for the similarity cost between images is introduced within a symmetric, diffeomorphic B-spline transformation model with diffusion regularization. The complexity is reduced by orders of magnitude and enables the minimization of much larger label spaces. In addition to the geometric transform labels, hyper-labels are introduced, which represent local intensity variations in this task, and allow for the direct estimation of lung ventilation. We validate the improvements in accuracy and performance on exhale-inhale CT volume pairs using a large number of expert landmarks.

  10. Finite Elements Based on Strong and Weak Formulations for Structural Mechanics: Stability, Accuracy and Reliability

    Directory of Open Access Journals (Sweden)

    Francesco Tornabene

    2017-07-01

    Full Text Available The authors are presenting a novel formulation based on the Differential Quadrature (DQ method which is used to approximate derivatives and integrals. The resulting scheme has been termed strong and weak form finite elements (SFEM or WFEM, according to the numerical scheme employed in the computation. Such numerical methods are applied to solve some structural problems related to the mechanical behavior of plates and shells, made of isotropic or composite materials. The main differences between these two approaches rely on the initial formulation – which is strong or weak (variational – and the implementation of the boundary conditions, that for the former include the continuity of stresses and displacements, whereas in the latter can consider the continuity of the displacements or both. The two methodologies consider also a mapping technique to transform an element of general shape described in Cartesian coordinates into the same element in the computational space. Such technique can be implemented by employing the classic Lagrangian-shaped elements with a fixed number of nodes along the element edges or blending functions which allow an “exact mapping” of the element. In particular, the authors are employing NURBS (Not-Uniform Rational B-Splines for such nonlinear mapping in order to use the “exact” shape of CAD designs.

  11. A Novel Object Based Visual Tracking

    Directory of Open Access Journals (Sweden)

    Gaofeng Li

    2014-08-01

    Full Text Available Visual tracking is a challenging task for object with changing appearance in complex scenes. Online learning and detection trackers are developed to resolve the difficulties such as non-rigid, fast motion, occlusion, rotation and scale change. We propose a novel object based tracking method to achieve robust and accurate object. The integrity of object and structural parts are combined for object tracking. Compressive sensing is employed to represent object as root filter. The sparsity of measurement matrix is constrained with superpixel segmentation. The part-based model is adopted to filter the local invariant features of parts. The structural constraint strategy between parts and object is developed for adaptive tracking. We test our proposed algorithm on challenging sequences in real world and make qualitative and quantitative analysis. The experimental results demonstrate the method runs in real time and performs well comparable to state-of-the-art tracking.

  12. Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    DEFF Research Database (Denmark)

    Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Sørensen, Lauge

    Interpolating kernels are crucial to solving a stationary velocity field (SVF) based image registration problem. This is because, velocity fields need to be computed in non-integer locations during integration. The regularity in the solution to the SVF registration problem is controlled by the re...... that Wendland SVF based measures separate (Alzheimer's disease v/s normal controls) better than both B-Spline SVFs (pamygdala) and B-Spline freeform deformation (pamygdala and cortical gray matter)....

  13. Free Vibration Analyses of FGM Thin Plates by Isogeometric Analysis Based on Classical Plate Theory and Physical Neutral Surface

    Directory of Open Access Journals (Sweden)

    Shuohui Yin

    2013-01-01

    Full Text Available The isogeometric analysis with nonuniform rational B-spline (NURBS based on the classical plate theory (CPT is developed for free vibration analyses of functionally graded material (FGM thin plates. The objective of this work is to provide an efficient and accurate numerical simulation approach for the nonhomogeneous thin plates and shells. Higher order basis functions can be easily obtained in IGA, thus the formulation of CPT based on the IGA can be simplified. For the FGM thin plates, material property gradient in the thickness direction is unsymmetrical about the midplane, so effects of midplane displacements cannot be ignored, whereas the CPT neglects midplane displacements. To eliminate the effects of midplane displacements without introducing new unknown variables, the physical neutral surface is introduced into the CPT. The approximation of the deflection field and the geometric description are performed by using the NURBS basis functions. Compared with the first-order shear deformation theory, the present method has lower memory consumption and higher efficiency. Several numerical results show that the present method yields highly accurate solutions.

  14. A fault diagnosis approach for diesel engine valve train based on improved ITD and SDAG-RVM

    International Nuclear Information System (INIS)

    Yu, Liu; Junhong, Zhang; Fengrong, Bi; Jiewei, Lin; Wenpeng, Ma

    2015-01-01

    Targeting the non-stationary characteristics of the vibration signals of a diesel engine valve train, and the limitation of the autoregressive (AR) model, a novel approach based on the improved intrinsic time-scale decomposition (ITD) and relevance vector machine (RVM) is proposed in this paper for the identification of diesel engine valve train faults. The approach mainly consists of three stages: First, prior to the feature extraction, non-uniform B-spline interpolation is introduced to the ITD method for the fitting of baseline signal, then the improved ITD is used to decompose the non-stationary signals into a set of stationary proper rotation components (PRCs). Second, the AR model is established for each PRC, and the first several AR coefficients together with the remnant variance of all PRCs are regarded as the fault feature vectors. Finally, a new separability based directed acyclic graph (SDAG) method is proposed to determine the structure of multi-class RVM, and the fault feature vectors are classified using the SDAG-RVM classifier to recognize the fault of the diesel engine valve train. The experimental results demonstrate that the proposed fault diagnosis approach can effectively extract the fault features and accurately identify the fault patterns. (paper)

  15. Creation of ORNL NURBS-based phantoms: evaluation of the voxel effect on absorbed doses from radiopharmaceuticals.

    Science.gov (United States)

    Gardumi, Anna; Farah, Jad; Desbrée, Aurélie

    2013-03-01

    Doses from radiopharmaceuticals absorbed by organs can be assessed using Monte Carlo simulations and computational phantoms. Patient-based voxel phantoms improve the realism of organ topology but present unrealistic stair-stepped surfaces. The goal of this research was to study the voxel effect on the basis of creation and voxelisation of a series of non-uniform rational B-spline (NURBS) reference phantoms issued from the publication of the Oak Ridge National Laboratory (ORNL). Absorbed doses from various radiopharmaceuticals were calculated and compared with the values obtained for the corresponding analytical phantoms for models of an adult male and a 5-y-old child. Dose differences lower than 12.5 % were observed when the critical structure of the skin was excluded. Moreover, the highest differences were noted for small organs and walls. Finally, all NURBS phantoms of the ORNL series, their voxelised version and the corresponding Monte Carlo N-Particle eXtended input files were programmed and are available for further simulations.

  16. Physics-based shape matching for intraoperative image guidance

    Energy Technology Data Exchange (ETDEWEB)

    Suwelack, Stefan, E-mail: suwelack@kit.edu; Röhl, Sebastian; Bodenstedt, Sebastian; Reichard, Daniel; Dillmann, Rüdiger; Speidel, Stefanie [Institute for Anthropomatics and Robotics, Karlsruhe Institute of Technology, Adenauerring 2, Karlsruhe 76131 (Germany); Santos, Thiago dos; Maier-Hein, Lena [Computer-assisted Interventions, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, Heidelberg 69120 (Germany); Wagner, Martin; Wünscher, Josephine; Kenngott, Hannes; Müller, Beat P. [General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Im Neuenheimer Feld 110, Heidelberg 69120 (Germany)

    2014-11-01

    Purpose: Soft-tissue deformations can severely degrade the validity of preoperative planning data during computer assisted interventions. Intraoperative imaging such as stereo endoscopic, time-of-flight or, laser range scanner data can be used to compensate these movements. In this context, the intraoperative surface has to be matched to the preoperative model. The shape matching is especially challenging in the intraoperative setting due to noisy sensor data, only partially visible surfaces, ambiguous shape descriptors, and real-time requirements. Methods: A novel physics-based shape matching (PBSM) approach to register intraoperatively acquired surface meshes to preoperative planning data is proposed. The key idea of the method is to describe the nonrigid registration process as an electrostatic–elastic problem, where an elastic body (preoperative model) that is electrically charged slides into an oppositely charged rigid shape (intraoperative surface). It is shown that the corresponding energy functional can be efficiently solved using the finite element (FE) method. It is also demonstrated how PBSM can be combined with rigid registration schemes for robust nonrigid registration of arbitrarily aligned surfaces. Furthermore, it is shown how the approach can be combined with landmark based methods and outline its application to image guidance in laparoscopic interventions. Results: A profound analysis of the PBSM scheme based on in silico and phantom data is presented. Simulation studies on several liver models show that the approach is robust to the initial rigid registration and to parameter variations. The studies also reveal that the method achieves submillimeter registration accuracy (mean error between 0.32 and 0.46 mm). An unoptimized, single core implementation of the approach achieves near real-time performance (2 TPS, 7–19 s total registration time). It outperforms established methods in terms of speed and accuracy. Furthermore, it is shown that the

  17. The role of continuity in residual-based variational multiscale modeling of turbulence

    NARCIS (Netherlands)

    Akkerman, I.; Bazilevs, Y.; Calo, V.M.; Hughes, T.J.R.; Hulshoff, S.

    2007-01-01

    This paper examines the role of continuity of the basis in the computation of turbulent flows. We compare standard finite elements and non-uniform rational B-splines (NURBS) discretizations that are employed in Isogeometric Analysis (Hughes et al. in Comput Methods Appl Mech Eng, 194:4135–4195,

  18. Free-form image registration of human cochlear μCT data using skeleton similarity as anatomical prior

    DEFF Research Database (Denmark)

    Kjer, Hans Martin; Fagertun, Jens; Vera, Sergio

    2016-01-01

    Better understanding of the anatomical variability of the human cochlear is important for the design and function of Cochlear Implants. Proper non-rigid alignment of high-resolution cochlear μCT data is a challenge for the typical cubic B-spline registration model. In this paper we study one way...... to provide a more global guidance of the alignment. The resulting registrations are evaluated using different metrics for accuracy and model behavior, and compared to the results of a registration without the prior....

  19. MANDIBULAR ASYMMETRY CHARACTERIZATION USING GENERALIZED TENSOR-BASED MORPHOMETRY.

    Science.gov (United States)

    Paniagua, Beatriz; Alhadidi, Abeer; Cevidanes, Lucia; Styner, Martin; Oguz, Ipek

    2011-12-31

    Quantitative assessment of facial asymmetry is crucial for successful planning of corrective surgery. We propose a tensor-based morphometry (TBM) framework to locate and quantify asymmetry using 3D CBCT images. To this end, we compute a rigid transformation between the mandible segmentation and its mirror image, which yields global rotation and translation with respect to the cranial base to guide the surgery's first stage. Next, we nonrigidly register the rigidly aligned images and use TBM methods to locally analyze the deformation field. This yields data on the location, amount and direction of "growth" (or "shrinkage") between the left and right sides. We visualize this data in a volumetric manner and via scalar and vector maps on the mandibular surface to provide the surgeon with optimal understanding of the patient's anatomy. We illustrate the feasibility and strength of our technique on 3 representative patients with a wide range of facial asymmetries.

  20. Preliminary Study on Hybrid Computational Phantom for Radiation Dosimetry Based on Subdivision Surface

    International Nuclear Information System (INIS)

    Jeong, Jong Hwi; Choi, Sang Hyoun; Cho, Sung Koo; Kim, Chan Hyeong

    2007-01-01

    The anthropomorphic computational phantoms are classified into two groups. One group is the stylized phantoms, or MIRD phantoms, which are based on mathematical representations of the anatomical structures. The shapes and positions of the organs and tissues in these phantoms can be adjusted by changing the coefficients of the equations in use. The other group is the voxel phantoms, which are based on tomographic images of a real person such as CT, MR and serially sectioned color slice images from a cadaver. Obviously, the voxel phantoms represent the anatomical structures of a human body much more realistically than the stylized phantoms. A realistic representation of anatomical structure is very important for an accurate calculation of radiation dose in the human body. Consequently, the ICRP recently has decided to use the voxel phantoms for the forthcoming update of the dose conversion coefficients. However, the voxel phantoms also have some limitations: (1) The topology and dimensions of the organs and tissues in a voxel model are extremely difficult to change, and (2) The thin organs, such as oral mucosa and skin, cannot be realistically modeled unless the voxel resolution is prohibitively high. Recently, a new approach has been implemented by several investigators. The investigators converted their voxel phantoms to hybrid computational phantoms based on NURBS (Non-Uniform Rational B-Splines) surface, which is smooth and deformable. It is claimed that these new phantoms have the flexibility of the stylized phantom along with the realistic representations of the anatomical structures. The topology and dimensions of the anatomical structures can be easily changed as necessary. Thin organs can be modeled without affecting computational speed or memory requirement. The hybrid phantoms can be also used for 4-D Monte Carlo simulations. In this preliminary study, the external shape of a voxel phantom (i.e., skin), HDRK-Man, was converted to a hybrid computational

  1. SU-E-J-209: Verification of 3D Surface Registration Between Stereograms and CT Images

    Energy Technology Data Exchange (ETDEWEB)

    Han, T; Gifford, K [UT MD Anderson Cancer Center, Houston, TX (United States); Smith, B [MD Anderson Cancer Center, Houston, TX (United States); Salehpour, M [M.D. Anderson Cancer Center, Houston, TX (United States)

    2014-06-01

    Purpose: Stereography can provide a visualization of the skin surface for radiation therapy patients. The aim of this study was to verify the registration algorithm in a commercial image analysis software, 3dMDVultus, for the fusion of stereograms and CT images. Methods: CT and stereographic scans were acquired of a head phantom and a deformable phantom. CT images were imported in 3dMDVultus and the surface contours were generated by threshold segmentation. Stereograms were reconstructed in 3dMDVultus. The resulting surfaces were registered with Vultus algorithm and then exported to in-house registration software and compared with four algorithms: rigid, affine, non-rigid iterative closest point (ICP) and b-spline algorithm. RMS (root-mean-square residuals of the surface point distances) error between the registered CT and stereogram surfaces was calculated and analyzed. Results: For the head phantom, the maximum RMS error between registered CT surfaces to stereogram was 6.6 mm for Vultus algorithm, whereas the mean RMS error was 0.7 mm. For the deformable phantom, the maximum RMS error was 16.2 mm for Vultus algorithm, whereas the mean RMS error was 4.4 mm. Non-rigid ICP demonstrated the best registration accuracy, as the mean of RMS errors were both within 1 mm. Conclusion: The accuracy of registration algorithm in 3dMDVultus was verified and exceeded RMS of 2 mm for deformable cases. Non-rigid ICP and b-spline algorithms improve the registration accuracy for both phantoms, especially in deformable one. For those patients whose body habitus deforms during radiation therapy, more advanced nonrigid algorithms need to be used.

  2. Effect of motion artifact on digital camera based heart rate measurement.

    Science.gov (United States)

    Hassan, M A; Malik, A S; Saad, N; Fofi, D; Meriaudeau, F

    2017-07-01

    Remote health monitoring is an emerging field in biomedical technology. Digital camera based heart rate measurement method is a recent development which would make remote health monitoring reliable and sustainable in future. This paper presents an investigation on the effect of motion artifact on digital camera-based heart rate measurement. The paper will discuss details on the principles and effects of motion artifacts on photoplethysmography signals. An experiment is conducted using publicly available MAHNOB-HCI database. We have investigated the effects of static scenarios, scenarios involving rigid motion and scenarios involving non-rigid motion. The experiment was tested on state of the art digital camera based heart rate measuring methods. The results showed the effectiveness of the methods and provide a direction to overcome/minimize the effect of motion artifacts for future research.

  3. Pectus excavatum postsurgical outcome based on preoperative soft body dynamics simulation

    Science.gov (United States)

    Moreira, Antonio H. J.; Rodrigues, Pedro L.; Fonseca, Jaime; Pinho, A. C. M.; Rodrigues, Nuno F.; Correia-Pinto, Jorge; Vilaça, João L.

    2012-02-01

    Pectus excavatum is the most common congenital deformity of the anterior chest wall, in which an abnormal formation of the rib cage gives the chest a caved-in or sunken appearance. Today, the surgical correction of this deformity is carried out in children and adults through Nuss technic, which consists in the placement of a prosthetic bar under the sternum and over the ribs. Although this technique has been shown to be safe and reliable, not all patients have achieved adequate cosmetic outcome. This often leads to psychological problems and social stress, before and after the surgical correction. This paper targets this particular problem by presenting a method to predict the patient surgical outcome based on pre-surgical imagiologic information and chest skin dynamic modulation. The proposed approach uses the patient pre-surgical thoracic CT scan and anatomical-surgical references to perform a 3D segmentation of the left ribs, right ribs, sternum and skin. The technique encompasses three steps: a) approximation of the cartilages, between the ribs and the sternum, trough b-spline interpolation; b) a volumetric mass spring model that connects two layers - inner skin layer based on the outer pleura contour and the outer surface skin; and c) displacement of the sternum according to the prosthetic bar position. A dynamic model of the skin around the chest wall region was generated, capable of simulating the effect of the movement of the prosthetic bar along the sternum. The results were compared and validated with patient postsurgical skin surface acquired with Polhemus FastSCAN system.

  4. MO-F-BRA-04: Voxel-Based Statistical Analysis of Deformable Image Registration Error via a Finite Element Method.

    Science.gov (United States)

    Li, S; Lu, M; Kim, J; Glide-Hurst, C; Chetty, I; Zhong, H

    2012-06-01

    Purpose Clinical implementation of adaptive treatment planning is limited by the lack of quantitative tools to assess deformable image registration errors (R-ERR). The purpose of this study was to develop a method, using finite element modeling (FEM), to estimate registration errors based on mechanical changes resulting from them. Methods An experimental platform to quantify the correlation between registration errors and their mechanical consequences was developed as follows: diaphragm deformation was simulated on the CT images in patients with lung cancer using a finite element method (FEM). The simulated displacement vector fields (F-DVF) were used to warp each CT image to generate a FEM image. B-Spline based (Elastix) registrations were performed from reference to FEM images to generate a registration DVF (R-DVF). The F- DVF was subtracted from R-DVF. The magnitude of the difference vector was defined as the registration error, which is a consequence of mechanically unbalanced energy (UE), computed using 'in-house-developed' FEM software. A nonlinear regression model was used based on imaging voxel data and the analysis considered clustered voxel data within images. Results A regression model analysis showed that UE was significantly correlated with registration error, DVF and the product of registration error and DVF respectively with R̂2=0.73 (R=0.854). The association was verified independently using 40 tracked landmarks. A linear function between the means of UE values and R- DVF*R-ERR has been established. The mean registration error (N=8) was 0.9 mm. 85.4% of voxels fit this model within one standard deviation. Conclusions An encouraging relationship between UE and registration error has been found. These experimental results suggest the feasibility of UE as a valuable tool for evaluating registration errors, thus supporting 4D and adaptive radiotherapy. The research was supported by NIH/NCI R01CA140341. © 2012 American Association of Physicists in

  5. Fourier-based linear systems description of free-breathing pulmonary magnetic resonance imaging

    Science.gov (United States)

    Capaldi, D. P. I.; Svenningsen, S.; Cunningham, I. A.; Parraga, G.

    2015-03-01

    Fourier-decomposition of free-breathing pulmonary magnetic resonance imaging (FDMRI) was recently piloted as a way to provide rapid quantitative pulmonary maps of ventilation and perfusion without the use of exogenous contrast agents. This method exploits fast pulmonary MRI acquisition of free-breathing proton (1H) pulmonary images and non-rigid registration to compensate for changes in position and shape of the thorax associated with breathing. In this way, ventilation imaging using conventional MRI systems can be undertaken but there has been no systematic evaluation of fundamental image quality measurements based on linear systems theory. We investigated the performance of free-breathing pulmonary ventilation imaging using a Fourier-based linear system description of each operation required to generate FDMRI ventilation maps. Twelve subjects with chronic obstructive pulmonary disease (COPD) or bronchiectasis underwent pulmonary function tests and MRI. Non-rigid registration was used to co-register the temporal series of pulmonary images. Pulmonary voxel intensities were aligned along a time axis and discrete Fourier transforms were performed on the periodic signal intensity pattern to generate frequency spectra. We determined the signal-to-noise ratio (SNR) of the FDMRI ventilation maps using a conventional approach (SNRC) and using the Fourier-based description (SNRF). Mean SNR was 4.7 ± 1.3 for subjects with bronchiectasis and 3.4 ± 1.8, for COPD subjects (p>.05). SNRF was significantly different than SNRC (p<.01). SNRF was approximately 50% of SNRC suggesting that the linear system model well-estimates the current approach.

  6. Binary moving-blocker-based scatter correction in cone-beam computed tomography with width-truncated projections: proof of concept.

    Science.gov (United States)

    Lee, Ho; Fahimian, Benjamin P; Xing, Lei

    2017-03-21

    This paper proposes a binary moving-blocker (BMB)-based technique for scatter correction in cone-beam computed tomography (CBCT). In concept, a beam blocker consisting of lead strips, mounted in front of the x-ray tube, moves rapidly in and out of the beam during a single gantry rotation. The projections are acquired in alternating phases of blocked and unblocked cone beams, where the blocked phase results in a stripe pattern in the width direction. To derive the scatter map from the blocked projections, 1D B-Spline interpolation/extrapolation is applied by using the detected information in the shaded regions. The scatter map of the unblocked projections is corrected by averaging two scatter maps that correspond to their adjacent blocked projections. The scatter-corrected projections are obtained by subtracting the corresponding scatter maps from the projection data and are utilized to generate the CBCT image by a compressed-sensing (CS)-based iterative reconstruction algorithm. Catphan504 and pelvis phantoms were used to evaluate the method's performance. The proposed BMB-based technique provided an effective method to enhance the image quality by suppressing scatter-induced artifacts, such as ring artifacts around the bowtie area. Compared to CBCT without a blocker, the spatial nonuniformity was reduced from 9.1% to 3.1%. The root-mean-square error of the CT numbers in the regions of interest (ROIs) was reduced from 30.2 HU to 3.8 HU. In addition to high resolution, comparable to that of the benchmark image, the CS-based reconstruction also led to a better contrast-to-noise ratio in seven ROIs. The proposed technique enables complete scatter-corrected CBCT imaging with width-truncated projections and allows reducing the acquisition time to approximately half. This work may have significant implications for image-guided or adaptive radiation therapy, where CBCT is often used.

  7. A dual length scale method for plane-wave-based, simulation studies of chemical systems modeled using mixed ab initio/empirical force field descriptions

    Science.gov (United States)

    Yarne, Dawn A.; Tuckerman, Mark E.; Martyna, Glenn J.

    2001-08-01

    Mixed ab initio/empirical force-field simulation studies, calculations in which one part of the system is treated using a fully ab initio description and another part is treated using an empirical description, are becoming increasingly popular. Here, the ability of the commonly used, plane wave-based generalized gradient approximation to density functional theory is extended to model systems in which the electrons are assumed to be localized in a single small region of space, that is, itself, embedded within a large chemically inert bath. This is accomplished by introducing two length scales, so that the rapidly varying, short range, electron-electron and electron-atom interactions, arising from the region where the electrons are localized, can be treated using an appropriately large plane wave basis, while the corresponding, slowly varying, long range interactions of the electrons with the full system or bath, can be treated using a small basis. Briefly, a novel Cardinal B-spline based formalism is employed to derive a smooth, differentiable, and rapidly convergent (with respect to the small basis) expression for the total electronic energy, which explicitly contains the two length scales. The method allows reciprocal space based techniques designed to treat clusters, wires, surfaces and solids/liquids (open, and 1-D and 2-D periodic boundary conditions, respectively) to be utilized. Other plane wave-based "mixed" methods are restricted to clusters. The new methodology, which scales as N log N at fixed size of the chemically active region, has been implemented for parallel computing platforms and tested through applications to both model and realistic problems including an enzyme, human carbonic anhydrase II solvated in an explicit bath of water molecules.

  8. TH-C-BRD-06: A Novel MRI Based CT Artifact Correction Method for Improving Proton Range Calculation in the Presence of Severe CT Artifacts

    International Nuclear Information System (INIS)

    Park, P; Schreibmann, E; Fox, T; Roper, J; Elder, E; Tejani, M; Crocker, I; Curran, W; Dhabaan, A

    2014-01-01

    Purpose: Severe CT artifacts can impair our ability to accurately calculate proton range thereby resulting in a clinically unacceptable treatment plan. In this work, we investigated a novel CT artifact correction method based on a coregistered MRI and investigated its ability to estimate CT HU and proton range in the presence of severe CT artifacts. Methods: The proposed method corrects corrupted CT data using a coregistered MRI to guide the mapping of CT values from a nearby artifact-free region. First patient MRI and CT images were registered using 3D deformable image registration software based on B-spline and mutual information. The CT slice with severe artifacts was selected as well as a nearby slice free of artifacts (e.g. 1cm away from the artifact). The two sets of paired MRI and CT images at different slice locations were further registered by applying 2D deformable image registration. Based on the artifact free paired MRI and CT images, a comprehensive geospatial analysis was performed to predict the correct CT HU of the CT image with severe artifact. For a proof of concept, a known artifact was introduced that changed the ground truth CT HU value up to 30% and up to 5cm error in proton range. The ability of the proposed method to recover the ground truth was quantified using a selected head and neck case. Results: A significant improvement in image quality was observed visually. Our proof of concept study showed that 90% of area that had 30% errors in CT HU was corrected to 3% of its ground truth value. Furthermore, the maximum proton range error up to 5cm was reduced to 4mm error. Conclusion: MRI based CT artifact correction method can improve CT image quality and proton range calculation for patients with severe CT artifacts

  9. Multi-template tensor-based morphometry: application to analysis of Alzheimer's disease

    DEFF Research Database (Denmark)

    Koikkalainen, Juha; Lötjönen, Jyrki; Thurfjell, Lennart

    2011-01-01

    In this paper methods for using multiple templates in tensor-based morphometry (TBM) are presented and compared to the conventional single-template approach. TBM analysis requires non-rigid registrations which are often subject to registration errors. When using multiple templates and, therefore......, multiple registrations, it can be assumed that the registration errors are averaged and eventually compensated. Four different methods are proposed for multi-template TBM. The methods were evaluated using magnetic resonance (MR) images of healthy controls, patients with stable or progressive mild cognitive...... impairment (MCI), and patients with Alzheimer's disease (AD) from the ADNI database (N=772). The performance of TBM features in classifying images was evaluated both quantitatively and qualitatively. Classification results show that the multi-template methods are statistically significantly better than...

  10. Structural optimisation based on the boundary element and level set methods.

    OpenAIRE

    Ullah, B.; Trevelyan, J.; Matthews, P.C.

    2014-01-01

    A new method of structural topology optimisation is proposed in which an evolutionary approach is used with boundary element and level set methods. During the optimisation iterations, the proposed method automatically introduces internal cavities and does not rely on an initial guess topology with pre-existing holes. The zero level set contours describing both the external geometry and the internal cavities are converted to non-uniform rational B-splines (NURBS) for smooth boundary element me...

  11. Slice correspondence estimation using SURF descriptors and context-based search for prostate whole-mount histology MRI registration.

    Science.gov (United States)

    Guzman, Lina; Commandeur, Frederic; Acosta, Oscar; Simon, Antoine; Fautrel, Alain; Rioux-Leclercq, Nathalie; Romero, Eduardo; Mathieu, Romain; de Crevoisier, Renaud

    2016-08-01

    Registration of histopathology volumes to Magnetic Resonance Images(MRI) is a crucial step for finding correlations in Prostate Cancer (PCa) and assessing tumor agressivity. This paper proposes a two-stage framework aimed at registering both modalities. Firstly, Speeded-Up Robust Features (SURF) algorithm and a context-based search is used to automatically determine slice correspondences between MRI and histology volumes. This step initializes a multimodal nonrigid registration strategy, which allows to propagate histology slices to MRI. Evaluation was performed on 5 prospective studies using a slice index score and landmark distances. With respect to a manual ground truth, the first stage of the framework exhibited an average error of 1,54 slice index and 3,51 mm in the prostate specimen. The reconstruction of a three-dimensional Whole-Mount Histology (WMH) shows promising results aimed to perform later PCa pattern detection and staging.

  12. Comparison of Total Variation with a Motion Estimation Based Compressed Sensing Approach for Self-Gated Cardiac Cine MRI in Small Animal Studies

    Science.gov (United States)

    Marinetto, Eugenio; Pascau, Javier; Desco, Manuel

    2014-01-01

    Purpose Compressed sensing (CS) has been widely applied to prospective cardiac cine MRI. The aim of this work is to study the benefits obtained by including motion estimation in the CS framework for small-animal retrospective cardiac cine. Methods We propose a novel B-spline-based compressed sensing method (SPLICS) that includes motion estimation and generalizes previous spatiotemporal total variation (ST-TV) methods by taking into account motion between frames. In addition, we assess the effect of an optimum weighting between spatial and temporal sparsity to further improve results. Both methods were implemented using the efficient Split Bregman methodology and were evaluated on rat data comparing animals with myocardial infarction with controls for several acceleration factors. Results ST-TV with optimum selection of the weighting sparsity parameter led to results similar to those of SPLICS; ST-TV with large relative temporal sparsity led to temporal blurring effects. However, SPLICS always properly corrected temporal blurring, independently of the weighting parameter. At acceleration factors of 15, SPLICS did not distort temporal intensity information but led to some artefacts and slight over-smoothing. At an acceleration factor of 7, images were reconstructed without significant loss of quality. Conclusion We have validated SPLICS for retrospective cardiac cine in small animal, achieving high acceleration factors. In addition, we have shown that motion modelling may not be essential for retrospective cine and that similar results can be obtained by using ST-TV provided that an optimum selection of the spatiotemporal sparsity weighting parameter is performed. PMID:25350290

  13. Two different methods for numerical solution of the modified Burgers' equation.

    Science.gov (United States)

    Karakoç, Seydi Battal Gazi; Başhan, Ali; Geyikli, Turabi

    2014-01-01

    A numerical solution of the modified Burgers' equation (MBE) is obtained by using quartic B-spline subdomain finite element method (SFEM) over which the nonlinear term is locally linearized and using quartic B-spline differential quadrature (QBDQM) method. The accuracy and efficiency of the methods are discussed by computing L 2 and L ∞ error norms. Comparisons are made with those of some earlier papers. The obtained numerical results show that the methods are effective numerical schemes to solve the MBE. A linear stability analysis, based on the von Neumann scheme, shows the SFEM is unconditionally stable. A rate of convergence analysis is also given for the DQM.

  14. Large-deformation modal coordinates for nonrigid vehicle dynamics

    Science.gov (United States)

    Likins, P. W.; Fleischer, G. E.

    1972-01-01

    The derivation of minimum-dimension sets of discrete-coordinate and hybrid-coordinate equations of motion of a system consisting of an arbitrary number of hinge-connected rigid bodies assembled in tree topology is presented. These equations are useful for the simulation of dynamical systems that can be idealized as tree-like arrangements of substructures, with each substructure consisting of either a rigid body or a collection of elastically interconnected rigid bodies restricted to small relative rotations at each connection. Thus, some of the substructures represent elastic bodies subjected to small strains or local deformations, but possibly large gross deformations, in the hybrid formulation, distributed coordinates referred to herein as large-deformation modal coordinates, are used for the deformations of these substructures. The equations are in a form suitable for incorporation into one or more computer programs to be used as multipurpose tools in the simulation of spacecraft and other complex electromechanical systems.

  15. Non-rigid registration by geometry-constrained diffusion

    DEFF Research Database (Denmark)

    Andresen, Per Rønsholt; Nielsen, Mads

    1999-01-01

    are not given. We will advocate the viewpoint that the aperture and the 3D interpolation problem may be solved simultaneously by finding the simplest displacement field. This is obtained by a geometry-constrained diffusion which yields the simplest displacement field in a precise sense. The point registration...

  16. Non-rigid registration by geometry-constrained diffusion

    DEFF Research Database (Denmark)

    Andresen, Per Rønsholt; Nielsen, Mads

    2001-01-01

    by a geometry-constrained diffusion, which in a precise sense yields the simplest displacement field. The point registration obtained may be used for segmentation, growth modeling, shape analysis, or kinematic interpolation. The algorithm applies to geometrical objects of any dimensionality. We may thus keep...

  17. DTI Analysis of Presbycusis Using Voxel-Based Analysis.

    Science.gov (United States)

    Ma, W; Li, M; Gao, F; Zhang, X; Shi, L; Yu, L; Zhao, B; Chen, W; Wang, G; Wang, X

    2016-07-14

    Presbycusis is the most common sensory deficit in the aging population. A recent study reported using a DTI-based tractography technique to identify a lack of integrity in a portion of the auditory pathway in patients with presbycusis. The aim of our study was to investigate the white matter pathology of patients with presbycusis by using a voxel-based analysis that is highly sensitive to local intensity changes in DTI data. Fifteen patients with presbycusis and 14 age- and sex-matched healthy controls were scanned on a 3T scanner. Fractional anisotropy, mean diffusivity, axial diffusivity, and radial diffusivity were obtained from the DTI data. Intergroup statistics were implemented on these measurements, which were transformed to Montreal Neurological Institute coordinates by using a nonrigid image registration method called large deformation diffeomorphic metric mapping. Increased axial diffusivity, radial diffusivity, and mean diffusivity and decreased fractional anisotropy were found near the right-side hearing-related areas in patients with presbycusis. Increased radial diffusivity and mean diffusivity were also found near a language-related area (Broca area) in patients with presbycusis. Our findings could be important for exploring reliable imaging evidence of presbycusis and could complement an ROI-based approach. © 2016 American Society of Neuroradiology.

  18. Base

    DEFF Research Database (Denmark)

    Hjulmand, Lise-Lotte; Johansson, Christer

    2004-01-01

    BASE - Engelsk basisgrammatik er resultatet af Lise-Lotte Hjulmands grundige bearbejdning og omfattende revidering af Christer Johanssons Engelska basgrammatik. Grammatikken adskiller sig fra det svenske forlæg på en lang række punkter. Den er bl.a. tilpasset til et dansk publikum og det danske...

  19. Variogram based and Multiple - Point Statistical simulation of shallow aquifer structures in the Upper Salzach valley, Austria

    Science.gov (United States)

    Jandrisevits, Carmen; Marschallinger, Robert

    2014-05-01

    /erosional processes and geometric shapes of hydrofacies can be integrated. The Training Image can be constructed with object based Training Image generators which offer predefined geometric shapes for modeling sediment facies associations. Training Images can also be constructed in a Computer Aided Design (CAD) system. Non-uniform rational B-Splines are implemented in CAD systems and enable to generate even more realistic geometric shapes of sediment bodies than by means of object based training image generators. Multiple Point Statistics Simulation aims to produce local patterns from the Training Image and conditionally anchor them to the investigation data. Regarding geometric shapes and lateral extensions of derived sediment structures, the Multiple Point Statistics simulations yielded the most sensible hydrofacies models while reproducing input data proportions.

  20. Pulse Shaping for High Capacity Impulse Radio Ultra-Wideband Wireless Links Under the Russian Spectral Emission Mask

    DEFF Research Database (Denmark)

    Grakhova, Elizaveta P.; Rommel, Simon; Jurado-Navas, Antonio

    2016-01-01

    Two pulse shapes for IR-UWB transmission under the Russian spectral emission mask are proposed and their potential experimentally demonstrated. Pulses based on the hyperbolic secant square function and the frequency B-spline wavelet are shown to enable transmission of 1.25 Gbit/s signals, reachin...

  1. Isogeometric shape optimization in fluid mechanics

    DEFF Research Database (Denmark)

    Nørtoft, Peter; Gravesen, Jens

    2013-01-01

    , the steady-state, incompressible Navier-Stokes equations, governing a laminar flow in the domain, must be solved. Based on isogeometric analysis, we use B-splines as the basis for both the design optimization and the flow analysis, thereby unifying the models for geometry and analysis, and, at the same time...

  2. Pulse Shaping for High Capacity Impulse Radio Ultra-Wideband Wireless Links Under the Russian Spectral Emission Mask

    DEFF Research Database (Denmark)

    Grakhova, Elizaveta P.; Rommel, Simon; Jurado-Navas, Antonio

    2016-01-01

    Two pulse shapes for IR-UWB transmission under the Russian spectral emission mask are proposed and their potential experimentally demonstrated. Pulses based on the hyperbolic secant square function and the frequency B-spline wavelet are shown to enable transmission of 1.25 Gbit/s signals, reaching...

  3. An image-based skeletal tissue model for the ICRP reference newborn

    Science.gov (United States)

    Pafundi, Deanna; Lee, Choonsik; Watchman, Christopher; Bourke, Vincent; Aris, John; Shagina, Natalia; Harrison, John; Fell, Tim; Bolch, Wesley

    2009-07-01

    Hybrid phantoms represent a third generation of computational models of human anatomy needed for dose assessment in both external and internal radiation exposures. Recently, we presented the first whole-body hybrid phantom of the ICRP reference newborn with a skeleton constructed from both non-uniform rational B-spline and polygon-mesh surfaces (Lee et al 2007 Phys. Med. Biol. 52 3309-33). The skeleton in that model included regions of cartilage and fibrous connective tissue, with the remainder given as a homogenous mixture of cortical and trabecular bone, active marrow and miscellaneous skeletal tissues. In the present study, we present a comprehensive skeletal tissue model of the ICRP reference newborn to permit a heterogeneous representation of the skeleton in that hybrid phantom set—both male and female—that explicitly includes a delineation of cortical bone so that marrow shielding effects are correctly modeled for low-energy photons incident upon the newborn skeleton. Data sources for the tissue model were threefold. First, skeletal site-dependent volumes of homogeneous bone were obtained from whole-cadaver CT image analyses. Second, selected newborn bone specimens were acquired at autopsy and subjected to micro-CT image analysis to derive model parameters of the marrow cavity and bone trabecular 3D microarchitecture. Third, data given in ICRP Publications 70 and 89 were selected to match reference values on total skeletal tissue mass. Active marrow distributions were found to be in reasonable agreement with those given previously by the ICRP. However, significant differences were seen in total skeletal and site-specific masses of trabecular and cortical bone between the current and ICRP newborn skeletal tissue models. The latter utilizes an age-independent ratio of 80%/20% cortical and trabecular bone for the reference newborn. In the current study, a ratio closer to 40%/60% is used based upon newborn CT and micro-CT skeletal image analyses. These

  4. Atlas-based functional radiosurgery: Early results

    Energy Technology Data Exchange (ETDEWEB)

    Stancanello, J.; Romanelli, P.; Pantelis, E.; Sebastiano, F.; Modugno, N. [Politecnico di Milano, Bioengineering Department and NEARlab, Milano, 20133 (Italy) and Siemens AG, Research and Clinical Collaborations, Erlangen, 91052 (Germany); Functional Neurosurgery Deptartment, Neuromed IRCCS, Pozzilli, 86077 (Italy); CyberKnife Center, Iatropolis, Athens, 15231 (Greece); Functional Neurosurgery Deptartment, Neuromed IRCCS, Pozzilli, 86077 (Italy)

    2009-02-15

    Functional disorders of the brain, such as dystonia and neuropathic pain, may respond poorly to medical therapy. Deep brain stimulation (DBS) of the globus pallidus pars interna (GPi) and the centromedian nucleus of the thalamus (CMN) may alleviate dystonia and neuropathic pain, respectively. A noninvasive alternative to DBS is radiosurgical ablation [internal pallidotomy (IP) and medial thalamotomy (MT)]. The main technical limitation of radiosurgery is that targets are selected only on the basis of MRI anatomy, without electrophysiological confirmation. This means that, to be feasible, image-based targeting must be highly accurate and reproducible. Here, we report on the feasibility of an atlas-based approach to targeting for functional radiosurgery. In this method, masks of the GPi, CMN, and medio-dorsal nucleus were nonrigidly registered to patients' T1-weighted MRI (T1w-MRI) and superimposed on patients' T2-weighted MRI (T2w-MRI). Radiosurgical targets were identified on the T2w-MRI registered to the planning CT by an expert functional neurosurgeon. To assess its feasibility, two patients were treated with the CyberKnife using this method of targeting; a patient with dystonia received an IP (120 Gy prescribed to the 65% isodose) and a patient with neuropathic pain received a MT (120 Gy to the 77% isodose). Six months after treatment, T2w-MRIs and contrast-enhanced T1w-MRIs showed edematous regions around the lesions; target placements were reevaluated by DW-MRIs. At 12 months post-treatment steroids for radiation-induced edema and medications for dystonia and neuropathic pain were suppressed. Both patients experienced significant relief from pain and dystonia-related problems. Fifteen months after treatment edema had disappeared. Thus, this work shows promising feasibility of atlas-based functional radiosurgery to improve patient condition. Further investigations are indicated for optimizing treatment dose.

  5. Atlas-based functional radiosurgery: Early results

    International Nuclear Information System (INIS)

    Stancanello, J.; Romanelli, P.; Pantelis, E.; Sebastiano, F.; Modugno, N.

    2009-01-01

    Functional disorders of the brain, such as dystonia and neuropathic pain, may respond poorly to medical therapy. Deep brain stimulation (DBS) of the globus pallidus pars interna (GPi) and the centromedian nucleus of the thalamus (CMN) may alleviate dystonia and neuropathic pain, respectively. A noninvasive alternative to DBS is radiosurgical ablation [internal pallidotomy (IP) and medial thalamotomy (MT)]. The main technical limitation of radiosurgery is that targets are selected only on the basis of MRI anatomy, without electrophysiological confirmation. This means that, to be feasible, image-based targeting must be highly accurate and reproducible. Here, we report on the feasibility of an atlas-based approach to targeting for functional radiosurgery. In this method, masks of the GPi, CMN, and medio-dorsal nucleus were nonrigidly registered to patients' T1-weighted MRI (T1w-MRI) and superimposed on patients' T2-weighted MRI (T2w-MRI). Radiosurgical targets were identified on the T2w-MRI registered to the planning CT by an expert functional neurosurgeon. To assess its feasibility, two patients were treated with the CyberKnife using this method of targeting; a patient with dystonia received an IP (120 Gy prescribed to the 65% isodose) and a patient with neuropathic pain received a MT (120 Gy to the 77% isodose). Six months after treatment, T2w-MRIs and contrast-enhanced T1w-MRIs showed edematous regions around the lesions; target placements were reevaluated by DW-MRIs. At 12 months post-treatment steroids for radiation-induced edema and medications for dystonia and neuropathic pain were suppressed. Both patients experienced significant relief from pain and dystonia-related problems. Fifteen months after treatment edema had disappeared. Thus, this work shows promising feasibility of atlas-based functional radiosurgery to improve patient condition. Further investigations are indicated for optimizing treatment dose.

  6. A kernel-based method for markerless tumor tracking in kV fluoroscopic images.

    Science.gov (United States)

    Zhang, Xiaoyong; Homma, Noriyasu; Ichiji, Kei; Abe, Makoto; Sugita, Norihiro; Takai, Yoshihiro; Narita, Yuichiro; Yoshizawa, Makoto

    2014-09-07

    Markerless tracking of respiration-induced tumor motion in kilo-voltage (kV) fluoroscopic image sequence is still a challenging task in real time image-guided radiation therapy (IGRT). Most of existing markerless tracking methods are based on a template matching technique or its extensions that are frequently sensitive to non-rigid tumor deformation and involve expensive computation. This paper presents a kernel-based method that is capable of tracking tumor motion in kV fluoroscopic image sequence with robust performance and low computational cost. The proposed tracking system consists of the following three steps. To enhance the contrast of kV fluoroscopic image, we firstly utilize a histogram equalization to transform the intensities of original images to a wider dynamical intensity range. A tumor target in the first frame is then represented by using a histogram-based feature vector. Subsequently, the target tracking is then formulated by maximizing a Bhattacharyya coefficient that measures the similarity between the tumor target and its candidates in the subsequent frames. The numerical solution for maximizing the Bhattacharyya coefficient is performed by a mean-shift algorithm. The proposed method was evaluated by using four clinical kV fluoroscopic image sequences. For comparison, we also implement four conventional template matching-based methods and compare their performance with our proposed method in terms of the tracking accuracy and computational cost. Experimental results demonstrated that the proposed method is superior to conventional template matching-based methods.

  7. BS Methods: A New Class of Spline Collocation BVMs

    Science.gov (United States)

    Mazzia, Francesca; Sestini, Alessandra; Trigiante, Donato

    2008-09-01

    BS methods are a recently introduced class of Boundary Value Methods which is based on B-splines. They can also be interpreted as spline collocation methods. For uniform meshes, the coefficients defining the k-step BS method are just the values of the (k+1)-degree uniform B-spline and B-spline derivative at its integer active knots; for general nonuniform meshes they are computed by solving local linear systems whose dimension depends on k. An important specific feature of BS methods is the possibility to associate a spline of degree k+1 and smoothness Ck to the numerical solution produced by the k-step method of this class. Such spline collocates the differential equation at the knots, shares the convergence order with the numerical solution, and can be computed with negligible additional computational cost. Here a survey on such methods is given, presenting the general definition, the convergence and stability features, and introducing the strategy for the computation of the coefficients in the B-spline basis which define the associated spline. Finally, some related numerical results are also presented.

  8. Integration by cell algorithm for Slater integrals in a spline basis

    International Nuclear Information System (INIS)

    Qiu, Y.; Fischer, C.F.

    1999-01-01

    An algorithm for evaluating Slater integrals in a B-spline basis is introduced. Based on the piecewise property of the B-splines, the algorithm divides the two-dimensional (r 1 , r 2 ) region into a number of rectangular cells according to the chosen grid and implements the two-dimensional integration over each individual cell using Gaussian quadrature. Over the off-diagonal cells, the integrands are separable so that each two-dimensional cell-integral is reduced to a product of two one-dimensional integrals. Furthermore, the scaling invariance of the B-splines in the logarithmic region of the chosen grid is fully exploited such that only some of the cell integrations need to be implemented. The values of given Slater integrals are obtained by assembling the cell integrals. This algorithm significantly improves the efficiency and accuracy of the traditional method that relies on the solution of differential equations and renders the B-spline method more effective when applied to multi-electron atomic systems

  9. A dynamic texture-based approach to recognition of facial actions and their temporal models.

    Science.gov (United States)

    Koelstra, Sander; Pantic, Maja; Patras, Ioannis

    2010-11-01

    In this work, we propose a dynamic texture-based approach to the recognition of facial Action Units (AUs, atomic facial gestures) and their temporal models (i.e., sequences of temporal segments: neutral, onset, apex, and offset) in near-frontal-view face videos. Two approaches to modeling the dynamics and the appearance in the face region of an input video are compared: an extended version of Motion History Images and a novel method based on Nonrigid Registration using Free-Form Deformations (FFDs). The extracted motion representation is used to derive motion orientation histogram descriptors in both the spatial and temporal domain. Per AU, a combination of discriminative, frame-based GentleBoost ensemble learners and dynamic, generative Hidden Markov Models detects the presence of the AU in question and its temporal segments in an input image sequence. When tested for recognition of all 27 lower and upper face AUs, occurring alone or in combination in 264 sequences from the MMI facial expression database, the proposed method achieved an average event recognition accuracy of 89.2 percent for the MHI method and 94.3 percent for the FFD method. The generalization performance of the FFD method has been tested using the Cohn-Kanade database. Finally, we also explored the performance on spontaneous expressions in the Sensitive Artificial Listener data set.

  10. Stereo vision-based tracking of soft tissue motion with application to online ablation control in laser microsurgery.

    Science.gov (United States)

    Schoob, Andreas; Kundrat, Dennis; Kahrs, Lüder A; Ortmaier, Tobias

    2017-08-01

    Recent research has revealed that image-based methods can enhance accuracy and safety in laser microsurgery. In this study, non-rigid tracking using surgical stereo imaging and its application to laser ablation is discussed. A recently developed motion estimation framework based on piecewise affine deformation modeling is extended by a mesh refinement step and considering texture information. This compensates for tracking inaccuracies potentially caused by inconsistent feature matches or drift. To facilitate online application of the method, computational load is reduced by concurrent processing and affine-invariant fusion of tracking and refinement results. The residual latency-dependent tracking error is further minimized by Kalman filter-based upsampling, considering a motion model in disparity space. Accuracy is assessed in laparoscopic, beating heart, and laryngeal sequences with challenging conditions, such as partial occlusions and significant deformation. Performance is compared with that of state-of-the-art methods. In addition, the online capability of the method is evaluated by tracking two motion patterns performed by a high-precision parallel-kinematic platform. Related experiments are discussed for tissue substitute and porcine soft tissue in order to compare performances in an ideal scenario and in a setup mimicking clinical conditions. Regarding the soft tissue trial, the tracking error can be significantly reduced from 0.72 mm to below 0.05 mm with mesh refinement. To demonstrate online laser path adaptation during ablation, the non-rigid tracking framework is integrated into a setup consisting of a surgical Er:YAG laser, a three-axis scanning unit, and a low-noise stereo camera. Regardless of the error source, such as laser-to-camera registration, camera calibration, image-based tracking, and scanning latency, the ablation root mean square error is kept below 0.21 mm when the sample moves according to the aforementioned patterns. Final

  11. Accelerated acquisition of tagged MRI for cardiac motion correction in simultaneous PET-MR: Phantom and patient studies

    International Nuclear Information System (INIS)

    Huang, Chuan; Petibon, Yoann; Ouyang, Jinsong; El Fakhri, Georges; Reese, Timothy G.; Ahlman, Mark A.; Bluemke, David A.

    2015-01-01

    Purpose: Degradation of image quality caused by cardiac and respiratory motions hampers the diagnostic quality of cardiac PET. It has been shown that improved diagnostic accuracy of myocardial defect can be achieved by tagged MR (tMR) based PET motion correction using simultaneous PET-MR. However, one major hurdle for the adoption of tMR-based PET motion correction in the PET-MR routine is the long acquisition time needed for the collection of fully sampled tMR data. In this work, the authors propose an accelerated tMR acquisition strategy using parallel imaging and/or compressed sensing and assess the impact on the tMR-based motion corrected PET using phantom and patient data. Methods: Fully sampled tMR data were acquired simultaneously with PET list-mode data on two simultaneous PET-MR scanners for a cardiac phantom and a patient. Parallel imaging and compressed sensing were retrospectively performed by GRAPPA and kt-FOCUSS algorithms with various acceleration factors. Motion fields were estimated using nonrigid B-spline image registration from both the accelerated and fully sampled tMR images. The motion fields were incorporated into a motion corrected ordered subset expectation maximization reconstruction algorithm with motion-dependent attenuation correction. Results: Although tMR acceleration introduced image artifacts into the tMR images for both phantom and patient data, motion corrected PET images yielded similar image quality as those obtained using the fully sampled tMR images for low to moderate acceleration factors (<4). Quantitative analysis of myocardial defect contrast over ten independent noise realizations showed similar results. It was further observed that although the image quality of the motion corrected PET images deteriorates for high acceleration factors, the images were still superior to the images reconstructed without motion correction. Conclusions: Accelerated tMR images obtained with more than 4 times acceleration can still provide

  12. Accelerated acquisition of tagged MRI for cardiac motion correction in simultaneous PET-MR: Phantom and patient studies

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Chuan, E-mail: chuan.huang@stonybrookmedicine.edu [Center for Advanced Medical Imaging Sciences, Division of Nuclear Medicine and Molecular Imaging, Department of Imaging, Massachusetts General Hospital, Boston, Massachusetts 02114 (United States); Department of Radiology, Harvard Medical School, Boston, Massachusetts 02115 (United States); Departments of Radiology, Psychiatry, Stony Brook Medicine, Stony Brook, New York 11794 (United States); Petibon, Yoann [Center for Advanced Medical Imaging Sciences, Division of Nuclear Medicine and Molecular Imaging, Department of Imaging, Massachusetts General Hospital, Boston, Massachusetts 02114 (United States); Ouyang, Jinsong; El Fakhri, Georges [Center for Advanced Medical Imaging Sciences, Division of Nuclear Medicine and Molecular Imaging, Department of Imaging, Massachusetts General Hospital, Boston, Massachusetts 02114 and Department of Radiology, Harvard Medical School, Boston, Massachusetts 02115 (United States); Reese, Timothy G. [Department of Radiology, Harvard Medical School, Boston, Massachusetts 02115 and Martinos Center for Biomedical Imaging, Charlestown, Massachusetts 02129 (United States); Ahlman, Mark A.; Bluemke, David A. [Radiology and Imaging Sciences, National Institutes of Health Clinical Center, Bethesda, Maryland 20892 (United States)

    2015-02-15

    Purpose: Degradation of image quality caused by cardiac and respiratory motions hampers the diagnostic quality of cardiac PET. It has been shown that improved diagnostic accuracy of myocardial defect can be achieved by tagged MR (tMR) based PET motion correction using simultaneous PET-MR. However, one major hurdle for the adoption of tMR-based PET motion correction in the PET-MR routine is the long acquisition time needed for the collection of fully sampled tMR data. In this work, the authors propose an accelerated tMR acquisition strategy using parallel imaging and/or compressed sensing and assess the impact on the tMR-based motion corrected PET using phantom and patient data. Methods: Fully sampled tMR data were acquired simultaneously with PET list-mode data on two simultaneous PET-MR scanners for a cardiac phantom and a patient. Parallel imaging and compressed sensing were retrospectively performed by GRAPPA and kt-FOCUSS algorithms with various acceleration factors. Motion fields were estimated using nonrigid B-spline image registration from both the accelerated and fully sampled tMR images. The motion fields were incorporated into a motion corrected ordered subset expectation maximization reconstruction algorithm with motion-dependent attenuation correction. Results: Although tMR acceleration introduced image artifacts into the tMR images for both phantom and patient data, motion corrected PET images yielded similar image quality as those obtained using the fully sampled tMR images for low to moderate acceleration factors (<4). Quantitative analysis of myocardial defect contrast over ten independent noise realizations showed similar results. It was further observed that although the image quality of the motion corrected PET images deteriorates for high acceleration factors, the images were still superior to the images reconstructed without motion correction. Conclusions: Accelerated tMR images obtained with more than 4 times acceleration can still provide

  13. Sequential Registration-Based Segmentation of the Prostate Gland in MR Image Volumes.

    Science.gov (United States)

    Khalvati, Farzad; Salmanpour, Aryan; Rahnamayan, Shahryar; Haider, Masoom A; Tizhoosh, H R

    2016-04-01

    Accurate and fast segmentation and volume estimation of the prostate gland in magnetic resonance (MR) images are necessary steps in the diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semi-automated segmentation of individual slices in T2-weighted MR image sequences. The proposed sequential registration-based segmentation (SRS) algorithm, which was inspired by the clinical workflow during medical image contouring, relies on inter-slice image registration and user interaction/correction to segment the prostate gland without the use of an anatomical atlas. It automatically generates contours for each slice using a registration algorithm, provided that the user edits and approves the marking in some previous slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid). Five radiation oncologists participated in the study where they contoured the prostate MR (T2-weighted) images of 15 patients both manually and using the SRS algorithm. Compared to the manual segmentation, on average, the SRS algorithm reduced the contouring time by 62% (a speedup factor of 2.64×) while maintaining the segmentation accuracy at the same level as the intra-user agreement level (i.e., Dice similarity coefficient of 91 versus 90%). The proposed algorithm exploits the inter-slice similarity of volumetric MR image series to achieve highly accurate results while significantly reducing the contouring time.

  14. A comparison study of atlas-based 3D cardiac MRI segmentation: global versus global and local transformations

    Science.gov (United States)

    Daryanani, Aditya; Dangi, Shusil; Ben-Zikri, Yehuda Kfir; Linte, Cristian A.

    2016-03-01

    Magnetic Resonance Imaging (MRI) is a standard-of-care imaging modality for cardiac function assessment and guidance of cardiac interventions thanks to its high image quality and lack of exposure to ionizing radiation. Cardiac health parameters such as left ventricular volume, ejection fraction, myocardial mass, thickness, and strain can be assessed by segmenting the heart from cardiac MRI images. Furthermore, the segmented pre-operative anatomical heart models can be used to precisely identify regions of interest to be treated during minimally invasive therapy. Hence, the use of accurate and computationally efficient segmentation techniques is critical, especially for intra-procedural guidance applications that rely on the peri-operative segmentation of subject-specific datasets without delaying the procedure workflow. Atlas-based segmentation incorporates prior knowledge of the anatomy of interest from expertly annotated image datasets. Typically, the ground truth atlas label is propagated to a test image using a combination of global and local registration. The high computational cost of non-rigid registration motivated us to obtain an initial segmentation using global transformations based on an atlas of the left ventricle from a population of patient MRI images and refine it using well developed technique based on graph cuts. Here we quantitatively compare the segmentations obtained from the global and global plus local atlases and refined using graph cut-based techniques with the expert segmentations according to several similarity metrics, including Dice correlation coefficient, Jaccard coefficient, Hausdorff distance, and Mean absolute distance error.

  15. Evaluation of adaptive treatment planning for patients with non-small cell lung cancer

    Science.gov (United States)

    Zhong, Hualiang; Siddiqui, Salim M.; Movsas, Benjamin; Chetty, Indrin J.

    2017-06-01

    The purpose of this study was to develop metrics to evaluate uncertainties in deformable dose accumulation for patients with non-small cell lung cancer (NSCLC). Initial treatment plans (primary) and cone-beam CT (CBCT) images were retrospectively processed for seven NSCLC patients, who showed significant tumor regression during the course of treatment. Each plan was developed with IMRT for 2 Gy  ×  33 fractions. A B-spline-based DIR algorithm was used to register weekly CBCT images to a reference image acquired at fraction 21 and the resultant displacement vector fields (DVFs) were then modified using a finite element method (FEM). The doses were calculated on each of these CBCT images and mapped to the reference image using a tri-linear dose interpolation method, based on the B-spline and FEM-generated DVFs. Contours propagated from the planning image were adjusted to the residual tumor and OARs on the reference image to develop a secondary plan. For iso-prescription adaptive plans (relative to initial plans), mean lung dose (MLD) was reduced, on average from 17.3 Gy (initial plan) to 15.2, 14.5 and 14.8 Gy for the plans adapted using the rigid, B-Spline and FEM-based registrations. Similarly, for iso-toxic adaptive plans (considering MLD relative to initial plans) using the rigid, B-Spline and FEM-based registrations, the average doses were 69.9  ±  6.8, 65.7  ±  5.1 and 67.2  ±  5.6 Gy in the initial volume (PTV1), and 81.5  ±  25.8, 77.7  ±  21.6, and 78.9  ±  22.5 Gy in the residual volume (PTV21), respectively. Tumor volume reduction was correlated with dose escalation (for isotoxic plans, correlation coefficient  =  0.92), and with MLD reduction (for iso-fractional plans, correlation coefficient  =  0.85). For the case of the iso-toxic dose escalation, plans adapted with the B-Spline and FEM DVFs differed from the primary plan adapted with rigid registration by 2.8  ±  1

  16. Microscopic validation of whole mouse micro-metastatic tumor imaging agents using cryo-imaging and sliding organ image registration.

    Science.gov (United States)

    Liu, Yiqiao; Zhou, Bo; Qutaish, Mohammed; Wilson, David L

    2016-01-01

    We created a metastasis imaging, analysis platform consisting of software and multi-spectral cryo-imaging system suitable for evaluating emerging imaging agents targeting micro-metastatic tumor. We analyzed CREKA-Gd in MRI, followed by cryo-imaging which repeatedly sectioned and tiled microscope images of the tissue block face, providing anatomical bright field and molecular fluorescence, enabling 3D microscopic imaging of the entire mouse with single metastatic cell sensitivity. To register MRI volumes to the cryo bright field reference, we used our standard mutual information, non-rigid registration which proceeded: preprocess → affine → B-spline non-rigid 3D registration. In this report, we created two modified approaches: mask where we registered locally over a smaller rectangular solid, and sliding organ . Briefly, in sliding organ , we segmented the organ, registered the organ and body volumes separately and combined results. Though s liding organ required manual annotation, it provided the best result as a standard to measure other registration methods. Regularization parameters for standard and mask methods were optimized in a grid search. Evaluations consisted of DICE, and visual scoring of a checkerboard display. Standard had accuracy of 2 voxels in all regions except near the kidney, where there were 5 voxels sliding. After mask and sliding organ correction, kidneys sliding were within 2 voxels, and Dice overlap increased 4%-10% in mask compared to standard . Mask generated comparable results with sliding organ and allowed a semi-automatic process.

  17. Surface displacement based shape analysis of central brain structures in preterm-born children

    Science.gov (United States)

    Garg, Amanmeet; Grunau, Ruth E.; Popuri, Karteek; Miller, Steven; Bjornson, Bruce; Poskitt, Kenneth J.; Beg, Mirza Faisal

    2016-03-01

    Many studies using T1 magnetic resonance imaging (MRI) data have found associations between changes in global metrics (e.g. volume) of brain structures and preterm birth. In this work, we use the surface displacement feature extracted from the deformations of the surface models of the third ventricle, fourth ventricle and brainstem to capture the variation in shape in these structures at 8 years of age that may be due to differences in the trajectory of brain development as a result of very preterm birth (24-32 weeks gestation). Understanding the spatial patterns of shape alterations in these structures in children who were born very preterm as compared to those who were born at full term may lead to better insights into mechanisms of differing brain development between these two groups. The T1 MRI data for the brain was acquired from children born full term (FT, n=14, 8 males) and preterm (PT, n=51, 22 males) at age 8-years. Accurate segmentation labels for these structures were obtained via a multi-template fusion based segmentation method. A high dimensional non-rigid registration algorithm was utilized to register the target segmentation labels to a set of segmentation labels defined on an average-template. The surface displacement data for the brainstem and the third ventricle were found to be significantly different (p MRI data and reveal shape changes that may be due to preterm birth.

  18. Patch forest: a hybrid framework of random forest and patch-based segmentation

    Science.gov (United States)

    Xie, Zhongliu; Gillies, Duncan

    2016-03-01

    The development of an accurate, robust and fast segmentation algorithm has long been a research focus in medical computer vision. State-of-the-art practices often involve non-rigidly registering a target image with a set of training atlases for label propagation over the target space to perform segmentation, a.k.a. multi-atlas label propagation (MALP). In recent years, the patch-based segmentation (PBS) framework has gained wide attention due to its advantage of relaxing the strict voxel-to-voxel correspondence to a series of pair-wise patch comparisons for contextual pattern matching. Despite a high accuracy reported in many scenarios, computational efficiency has consistently been a major obstacle for both approaches. Inspired by recent work on random forest, in this paper we propose a patch forest approach, which by equipping the conventional PBS with a fast patch search engine, is able to boost segmentation speed significantly while retaining an equal level of accuracy. In addition, a fast forest training mechanism is also proposed, with the use of a dynamic grid framework to efficiently approximate data compactness computation and a 3D integral image technique for fast box feature retrieval.

  19. Multi-template tensor-based morphometry: application to analysis of Alzheimer's disease.

    Science.gov (United States)

    Koikkalainen, Juha; Lötjönen, Jyrki; Thurfjell, Lennart; Rueckert, Daniel; Waldemar, Gunhild; Soininen, Hilkka

    2011-06-01

    In this paper methods for using multiple templates in tensor-based morphometry (TBM) are presented and compared to the conventional single-template approach. TBM analysis requires non-rigid registrations which are often subject to registration errors. When using multiple templates and, therefore, multiple registrations, it can be assumed that the registration errors are averaged and eventually compensated. Four different methods are proposed for multi-template TBM. The methods were evaluated using magnetic resonance (MR) images of healthy controls, patients with stable or progressive mild cognitive impairment (MCI), and patients with Alzheimer's disease (AD) from the ADNI database (N=772). The performance of TBM features in classifying images was evaluated both quantitatively and qualitatively. Classification results show that the multi-template methods are statistically significantly better than the single-template method. The overall classification accuracy was 86.0% for the classification of control and AD subjects, and 72.1% for the classification of stable and progressive MCI subjects. The statistical group-level difference maps produced using multi-template TBM were smoother, formed larger continuous regions, and had larger t-values than the maps obtained with single-template TBM. Copyright © 2011 Elsevier Inc. All rights reserved.

  20. Comparing registration methods for mapping brain change using tensor-based morphometry.

    Science.gov (United States)

    Yanovsky, Igor; Leow, Alex D; Lee, Suh; Osher, Stanley J; Thompson, Paul M

    2009-10-01

    Measures of brain changes can be computed from sequential MRI scans, providing valuable information on disease progression for neuroscientific studies and clinical trials. Tensor-based morphometry (TBM) creates maps of these brain changes, visualizing the 3D profile and rates of tissue growth or atrophy. In this paper, we examine the power of different nonrigid registration models to detect changes in TBM, and their stability when no real changes are present. Specifically, we investigate an asymmetric version of a recently proposed Unbiased registration method, using mutual information as the matching criterion. We compare matching functionals (sum of squared differences and mutual information), as well as large-deformation registration schemes (viscous fluid and inverse-consistent linear elastic registration methods versus Symmetric and Asymmetric Unbiased registration) for detecting changes in serial MRI scans of 10 elderly normal subjects and 10 patients with Alzheimer's Disease scanned at 2-week and 1-year intervals. We also analyzed registration results when matching images corrupted with artificial noise. We demonstrated that the unbiased methods, both symmetric and asymmetric, have higher reproducibility. The unbiased methods were also less likely to detect changes in the absence of any real physiological change. Moreover, they measured biological deformations more accurately by penalizing bias in the corresponding statistical maps.

  1. Tensor-based morphometry with stationary velocity field diffeomorphic registration: application to ADNI.

    Science.gov (United States)

    Bossa, Matias; Zacur, Ernesto; Olmos, Salvador

    2010-07-01

    Tensor-based morphometry (TBM) is an analysis technique where anatomical information is characterized by means of the spatial transformations mapping a customized template with the observed images. Therefore, accurate inter-subject non-rigid registration is an essential prerequisite for both template estimation and image warping. Subsequent statistical analysis on the spatial transformations is performed to highlight voxel-wise differences. Most of previous TBM studies did not explore the influence of the registration parameters, such as the parameters defining the deformation and the regularization models. In this work performance evaluation of TBM using stationary velocity field (SVF) diffeomorphic registration was performed in a subset of subjects from Alzheimer's Disease Neuroimaging Initiative (ADNI) study. A wide range of values of the registration parameters that define the transformation smoothness and the balance between image matching and regularization were explored in the evaluation. The proposed methodology provided brain atrophy maps with very detailed anatomical resolution and with a high significance level compared with results recently published on the same data set using a non-linear elastic registration method. Copyright (c) 2010 Elsevier Inc. All rights reserved.

  2. Color Feature-Based Object Tracking through Particle Swarm Optimization with Improved Inertia Weight.

    Science.gov (United States)

    Guo, Siqiu; Zhang, Tao; Song, Yulong; Qian, Feng

    2018-04-23

    This paper presents a particle swarm tracking algorithm with improved inertia weight based on color features. The weighted color histogram is used as the target feature to reduce the contribution of target edge pixels in the target feature, which makes the algorithm insensitive to the target non-rigid deformation, scale variation, and rotation. Meanwhile, the influence of partial obstruction on the description of target features is reduced. The particle swarm optimization algorithm can complete the multi-peak search, which can cope well with the object occlusion tracking problem. This means that the target is located precisely where the similarity function appears multi-peak. When the particle swarm optimization algorithm is applied to the object tracking, the inertia weight adjustment mechanism has some limitations. This paper presents an improved method. The concept of particle maturity is introduced to improve the inertia weight adjustment mechanism, which could adjust the inertia weight in time according to the different states of each particle in each generation. Experimental results show that our algorithm achieves state-of-the-art performance in a wide range of scenarios.

  3. A 2D-View Depth Image- and CNN-Based 3D Model Identification Method

    Directory of Open Access Journals (Sweden)

    Yiyu Hong

    2017-09-01

    Full Text Available With the rapid development of three-dimensional (3D technology and an increase in the number of available models, issues with copyright protection of 3D models are inevitable. In this paper, we propose a 2D-view depth image- and convolutional neural network (CNN-based 3D model identification method. To identify a 3D model, we first need an adequate number of the modified versions that could be made by copyright infringers. Then, they can be represented by a number of 2D-view depth images that are captured from evenly distributed vertices on a regular convex polyhedron. Finally, a CNN is trained by these depth images to acquire the capability of identifying the 3D model. The experiment carried out with the dataset of Shape Retrieval Contest 2015 (SHREC’15: Non-Rigid 3D Shape Retrieval shows the practicability of our method, which yields 93.5% accuracy. The effectiveness of the proposed method is demonstrated via evaluation in the latest standard benchmark SHREC’17 Deformable Shape Retrieval with Missing Parts. It clearly shows superior or comparable performance to state-of-the-art methods, shown by the fact that it is in the top three of the 11 participating methods (without counting different runs.

  4. Image-based modeling of flow and reactive transport in porous media

    Science.gov (United States)

    Qin, Chao-Zhong; Hoang, Tuong; Verhoosel, Clemens V.; Harald van Brummelen, E.; Wijshoff, Herman M. A.

    2017-04-01

    Due to the availability of powerful computational resources and high-resolution acquisition of material structures, image-based modeling has become an important tool in studying pore-scale flow and transport processes in porous media [Scheibe et al., 2015]. It is also playing an important role in the upscaling study for developing macroscale porous media models. Usually, the pore structure of a porous medium is directly discretized by the voxels obtained from visualization techniques (e.g. micro CT scanning), which can avoid the complex generation of computational mesh. However, this discretization may considerably overestimate the interfacial areas between solid walls and pore spaces. As a result, it could impact the numerical predictions of reactive transport and immiscible two-phase flow. In this work, two types of image-based models are used to study single-phase flow and reactive transport in a porous medium of sintered glass beads. One model is from a well-established voxel-based simulation tool. The other is based on the mixed isogeometric finite cell method [Hoang et al., 2016], which has been implemented in the open source Nutils (http://www.nutils.org). The finite cell method can be used in combination with isogeometric analysis to enable the higher-order discretization of problems on complex volumetric domains. A particularly interesting application of this immersed simulation technique is image-based analysis, where the geometry is smoothly approximated by segmentation of a B-spline level set approximation of scan data [Verhoosel et al., 2015]. Through a number of case studies by the two models, we will show the advantages and disadvantages of each model in modeling single-phase flow and reactive transport in porous media. Particularly, we will highlight the importance of preserving high-resolution interfaces between solid walls and pore spaces in image-based modeling of porous media. References Hoang, T., C. V. Verhoosel, F. Auricchio, E. H. van

  5. Using tensor-based morphometry to detect structural brain abnormalities in rats with adolescent intermittent alcohol exposure

    Science.gov (United States)

    Paniagua, Beatriz; Ehlers, Cindy; Crews, Fulton; Budin, Francois; Larson, Garrett; Styner, Martin; Oguz, Ipek

    2011-03-01

    Understanding the effects of adolescent binge drinking that persist into adulthood is a crucial public health issue. Adolescent intermittent ethanol exposure (AIE) is an animal model that can be used to investigate these effects in rodents. In this work, we investigate the application of a particular image analysis technique, tensor-based morphometry, for detecting anatomical differences between AIE and control rats using Diffusion Tensor Imaging (DTI). Deformation field analysis is a popular method for detecting volumetric changes analyzing Jacobian determinants calculated on deformation fields. Recent studies showed that computing deformation field metrics on the full deformation tensor, often referred to as tensor-based morphometry (TBM), increases the sensitivity to anatomical differences. In this paper we conduct a comprehensive TBM study for precisely locating differences between control and AIE rats. Using a DTI RARE sequence designed for minimal geometric distortion, 12-directional images were acquired postmortem for control and AIE rats (n=9). After preprocessing, average images for the two groups were constructed using an unbiased atlas building approach. We non-rigidly register the two atlases using Large Deformation Diffeomorphic Metric Mapping, and analyze the resulting deformation field using TBM. In particular, we evaluate the tensor determinant, geodesic anisotropy, and deformation direction vector (DDV) on the deformation field to detect structural differences. This yields data on the local amount of growth, shrinkage and the directionality of deformation between the groups. We show that TBM can thus be used to measure group morphological differences between rat populations, demonstrating the potential of the proposed framework.

  6. Intensity-based hierarchical elastic registration using approximating splines.

    Science.gov (United States)

    Serifovic-Trbalic, Amira; Demirovic, Damir; Cattin, Philippe C

    2014-01-01

    We introduce a new hierarchical approach for elastic medical image registration using approximating splines. In order to obtain the dense deformation field, we employ Gaussian elastic body splines (GEBS) that incorporate anisotropic landmark errors and rotation information. Since the GEBS approach is based on a physical model in form of analytical solutions of the Navier equation, it can very well cope with the local as well as global deformations present in the images by varying the standard deviation of the Gaussian forces. The proposed GEBS approximating model is integrated into the elastic hierarchical image registration framework, which decomposes a nonrigid registration problem into numerous local rigid transformations. The approximating GEBS registration scheme incorporates anisotropic landmark errors as well as rotation information. The anisotropic landmark localization uncertainties can be estimated directly from the image data, and in this case, they represent the minimal stochastic localization error, i.e., the Cramér-Rao bound. The rotation information of each landmark obtained from the hierarchical procedure is transposed in an additional angular landmark, doubling the number of landmarks in the GEBS model. The modified hierarchical registration using the approximating GEBS model is applied to register 161 image pairs from a digital mammogram database. The obtained results are very encouraging, and the proposed approach significantly improved all registrations comparing the mean-square error in relation to approximating TPS with the rotation information. On artificially deformed breast images, the newly proposed method performed better than the state-of-the-art registration algorithm introduced by Rueckert et al. (IEEE Trans Med Imaging 18:712-721, 1999). The average error per breast tissue pixel was less than 2.23 pixels compared to 2.46 pixels for Rueckert's method. The proposed hierarchical elastic image registration approach incorporates the GEBS

  7. Isogeometric analysis of sound propagation through laminar flow in 2-dimensional ducts

    DEFF Research Database (Denmark)

    Nørtoft, Peter; Gravesen, Jens; Willatzen, Morten

    2015-01-01

    We consider the propagation of sound through a slowly moving fluid in a 2-dimensional duct. A detailed description of a flow-acoustic model of the problem using B-spline based isogeometric analysis is given. The model couples the non-linear, steady-state, incompressible Navier-Stokes equation...... in the laminar regime for the flow field, to a linear, time-harmonic acoustic equation in the low Mach number regime for the sound signal. B-splines are used both to represent the duct geometry and to approximate the flow and sound fields. This facilitates an exact representation of complex duct geometries...... are found when the acoustic pressure is approximated by higher order polynomials. Based on the model, we examine how the acoustic signal varies with sound frequency, flow speed and duct geometry. A combination of duct geometry and sound frequency is identified for which the acoustic signal is particularly...

  8. Numerical Solution of the Modified Equal Width Wave Equation

    Directory of Open Access Journals (Sweden)

    Seydi Battal Gazi Karakoç

    2012-01-01

    Full Text Available Numerical solution of the modified equal width wave equation is obtained by using lumped Galerkin method based on cubic B-spline finite element method. Solitary wave motion and interaction of two solitary waves are studied using the proposed method. Accuracy of the proposed method is discussed by computing the numerical conserved laws 2 and ∞ error norms. The numerical results are found in good agreement with exact solution. A linear stability analysis of the scheme is also investigated.

  9. A Stochastic Wavelet Finite Element Method for 1D and 2D Structures Analysis

    OpenAIRE

    Xingwu Zhang; Xuefeng Chen; Zhibo Yang; Bing Li; Zhengjia He

    2014-01-01

    A stochastic finite element method based on B-spline wavelet on the interval (BSWI-SFEM) is presented for static analysis of 1D and 2D structures in this paper. Instead of conventional polynomial interpolation, the scaling functions of BSWI are employed to construct the displacement field. By means of virtual work principle and BSWI, the wavelet finite elements of beam, plate, and plane rigid frame are obtained. Combining the Monte Carlo method and the constructed BSWI elements together, the...

  10. A fourth order spline collocation approach for a business cycle model

    Science.gov (United States)

    Sayfy, A.; Khoury, S.; Ibdah, H.

    2013-10-01

    A collocation approach, based on a fourth order cubic B-splines is presented for the numerical solution of a Kaleckian business cycle model formulated by a nonlinear delay differential equation. The equation is approximated and the nonlinearity is handled by employing an iterative scheme arising from Newton's method. It is shown that the model exhibits a conditionally dynamical stable cycle. The fourth-order rate of convergence of the scheme is verified numerically for different special cases.

  11. Collocation and finite difference-collocation methods for the solution of nonlinear Klein-Gordon equation

    Science.gov (United States)

    Lakestani, Mehrdad; Dehghan, Mehdi

    2010-08-01

    Two numerical techniques based on the finite difference and collocation methods are presented for the solution of nonlinear Klein-Gordon equation. The operational matrix of derivative for the cubic B-spline scaling functions is presented and is utilized to reduce the solution of nonlinear Klein-Gordon equation to the solution of algebraic equations. Illustrative examples are included to demonstrate the validity and applicability of the new techniques.

  12. A Computational Program for Multiple Scale Analysis of Failure in Non-Uniform Composite Materials

    Science.gov (United States)

    2006-03-31

    continuum model based macroscopic analysis. On the other hand, the top-down localization process cascading down to the mi- crostructure in critical regions...are the Haar function [43], the Meyer’s wavelets [65], the Chui-Wang’s B-spline wavelets [21], etc. One of the most commonly used wavelet functions is...analysis. On the other hand, the top-down localization process cascading down to the mi- crostructure in critical regions of localized damage or

  13. Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    DEFF Research Database (Denmark)

    Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Sørensen, Lauge

    by the regularization term. In a variational formulation, this term is traditionally expressed as a squared norm which is a scalar inner product of the interpolating kernels parameterizing the velocity fields. The minimization of this term using the standard spline interpolation kernels (linear or cubic) is only...... approximative because of the lack of a compatible norm. In this paper, we propose to replace such interpolants with a norm-minimizing interpolant - the Wendland kernel which has the same computational simplicity like B-Splines. An application on the Alzheimer's disease neuroimaging initiative showed...... that Wendland SVF based measures separate (Alzheimer's disease v/s normal controls) better than both B-Spline SVFs (pSpline freeform deformation (p

  14. A numerical scheme for the generalized Burgers–Huxley equation

    Directory of Open Access Journals (Sweden)

    Brajesh K. Singh

    2016-10-01

    Full Text Available In this article, a numerical solution of generalized Burgers–Huxley (gBH equation is approximated by using a new scheme: modified cubic B-spline differential quadrature method (MCB-DQM. The scheme is based on differential quadrature method in which the weighting coefficients are obtained by using modified cubic B-splines as a set of basis functions. This scheme reduces the equation into a system of first-order ordinary differential equation (ODE which is solved by adopting SSP-RK43 scheme. Further, it is shown that the proposed scheme is stable. The efficiency of the proposed method is illustrated by four numerical experiments, which confirm that obtained results are in good agreement with earlier studies. This scheme is an easy, economical and efficient technique for finding numerical solutions for various kinds of (nonlinear physical models as compared to the earlier schemes.

  15. Structural MRI-based discrimination between autistic and typically developing brain

    International Nuclear Information System (INIS)

    Fahmi, R.; Hassan, H.; Farag, A.A.; Elbaz, A.; Casanova, M.F.

    2007-01-01

    Autism is a neurodevelopmental disorder characterized by marked deficits in communication, social interaction, and interests. Various studies of autism have suggested abnormalities in several brain regions, with an increasing agreement on the abnormal anatomy of the white matter (WM) and on deficits in the size of the corpus callosum (CC) and its sub-regions in autism. In this paper, we aim at using these abnormalities in order to devise robust classification methods of autistic vs. typically developing brains by analyzing their respective MRIs. Our analysis is based on shape descriptions and geometric models. We compute the 3D distance map to describe the shape of the WM, and use it as a statistical feature to discriminate between the two groups. We also use our recently proposed non-rigid registration technique to devise another classification approach by statistically analyzing and comparing the deformation fields generated from registering segmented CC's onto each others. The proposed techniques are tested on postmortem and on in-vivo brain MR data. At the 85% confidence level the WM-based classification algorithm correctly classified 14/14 postmortem-autistics and 12/12 in-vivo autistics, a 100% accuracy rate, and 13/15 postmortem controls (86% accuracy rate) and 30/30 in-vivo controls (100% accuracy rate). The technique based on the analysis of the CC was applied only on the in vivo data. At the 85% confidence rate, this technique correctly classified 10/15 autistics, a 0.66 accuracy rate, and 29/30 controls, a 0.96 accuracy rate. These results are very promising and show that, contrary to traditional methods, the proposed techniques are less sensitive to age and volume effects. (orig.)

  16. Structural MRI-based discrimination between autistic and typically developing brain

    Energy Technology Data Exchange (ETDEWEB)

    Fahmi, R.; Hassan, H.; Farag, A.A. [CVIP Lab., Univ. of Louisville, KY (United States); Elbaz, A. [Dept. of Bioengineering, Univ. of Louisville, KY (United States); Casanova, M.F. [Dept. of Psychiatry and Behavioral science, Univ. of Louisville, KY (United States)

    2007-06-15

    Autism is a neurodevelopmental disorder characterized by marked deficits in communication, social interaction, and interests. Various studies of autism have suggested abnormalities in several brain regions, with an increasing agreement on the abnormal anatomy of the white matter (WM) and on deficits in the size of the corpus callosum (CC) and its sub-regions in autism. In this paper, we aim at using these abnormalities in order to devise robust classification methods of autistic vs. typically developing brains by analyzing their respective MRIs. Our analysis is based on shape descriptions and geometric models. We compute the 3D distance map to describe the shape of the WM, and use it as a statistical feature to discriminate between the two groups. We also use our recently proposed non-rigid registration technique to devise another classification approach by statistically analyzing and comparing the deformation fields generated from registering segmented CC's onto each others. The proposed techniques are tested on postmortem and on in-vivo brain MR data. At the 85% confidence level the WM-based classification algorithm correctly classified 14/14 postmortem-autistics and 12/12 in-vivo autistics, a 100% accuracy rate, and 13/15 postmortem controls (86% accuracy rate) and 30/30 in-vivo controls (100% accuracy rate). The technique based on the analysis of the CC was applied only on the in vivo data. At the 85% confidence rate, this technique correctly classified 10/15 autistics, a 0.66 accuracy rate, and 29/30 controls, a 0.96 accuracy rate. These results are very promising and show that, contrary to traditional methods, the proposed techniques are less sensitive to age and volume effects. (orig.)

  17. Hybrid computational phantoms of the male and female newborn patient: NURBS-based whole-body models

    Science.gov (United States)

    Lee, Choonsik; Lodwick, Daniel; Hasenauer, Deanna; Williams, Jonathan L.; Lee, Choonik; Bolch, Wesley E.

    2007-07-01

    Anthropomorphic computational phantoms are computer models of the human body for use in the evaluation of dose distributions resulting from either internal or external radiation sources. Currently, two classes of computational phantoms have been developed and widely utilized for organ dose assessment: (1) stylized phantoms and (2) voxel phantoms which describe the human anatomy via mathematical surface equations or 3D voxel matrices, respectively. Although stylized phantoms based on mathematical equations can be very flexible in regard to making changes in organ position and geometrical shape, they are limited in their ability to fully capture the anatomic complexities of human internal anatomy. In turn, voxel phantoms have been developed through image-based segmentation and correspondingly provide much better anatomical realism in comparison to simpler stylized phantoms. However, they themselves are limited in defining organs presented in low contrast within either magnetic resonance or computed tomography images—the two major sources in voxel phantom construction. By definition, voxel phantoms are typically constructed via segmentation of transaxial images, and thus while fine anatomic features are seen in this viewing plane, slice-to-slice discontinuities become apparent in viewing the anatomy of voxel phantoms in the sagittal or coronal planes. This study introduces the concept of a hybrid computational newborn phantom that takes full advantage of the best features of both its stylized and voxel counterparts: flexibility in phantom alterations and anatomic realism. Non-uniform rational B-spline (NURBS) surfaces, a mathematical modeling tool traditionally applied to graphical animation studies, was adopted to replace the limited mathematical surface equations of stylized phantoms. A previously developed whole-body voxel phantom of the newborn female was utilized as a realistic anatomical framework for hybrid phantom construction. The construction of a hybrid

  18. Hybrid computational phantoms of the male and female newborn patient: NURBS-based whole-body models

    International Nuclear Information System (INIS)

    Lee, Choonsik; Lodwick, Daniel; Hasenauer, Deanna; Williams, Jonathan L; Lee, Choonik; Bolch, Wesley E

    2007-01-01

    Anthropomorphic computational phantoms are computer models of the human body for use in the evaluation of dose distributions resulting from either internal or external radiation sources. Currently, two classes of computational phantoms have been developed and widely utilized for organ dose assessment: (1) stylized phantoms and (2) voxel phantoms which describe the human anatomy via mathematical surface equations or 3D voxel matrices, respectively. Although stylized phantoms based on mathematical equations can be very flexible in regard to making changes in organ position and geometrical shape, they are limited in their ability to fully capture the anatomic complexities of human internal anatomy. In turn, voxel phantoms have been developed through image-based segmentation and correspondingly provide much better anatomical realism in comparison to simpler stylized phantoms. However, they themselves are limited in defining organs presented in low contrast within either magnetic resonance or computed tomography images-the two major sources in voxel phantom construction. By definition, voxel phantoms are typically constructed via segmentation of transaxial images, and thus while fine anatomic features are seen in this viewing plane, slice-to-slice discontinuities become apparent in viewing the anatomy of voxel phantoms in the sagittal or coronal planes. This study introduces the concept of a hybrid computational newborn phantom that takes full advantage of the best features of both its stylized and voxel counterparts: flexibility in phantom alterations and anatomic realism. Non-uniform rational B-spline (NURBS) surfaces, a mathematical modeling tool traditionally applied to graphical animation studies, was adopted to replace the limited mathematical surface equations of stylized phantoms. A previously developed whole-body voxel phantom of the newborn female was utilized as a realistic anatomical framework for hybrid phantom construction. The construction of a hybrid

  19. Feasibility of MR-Based Body Composition Analysis in Large Scale Population Studies.

    Directory of Open Access Journals (Sweden)

    Janne West

    Full Text Available Quantitative and accurate measurements of fat and muscle in the body are important for prevention and diagnosis of diseases related to obesity and muscle degeneration. Manually segmenting muscle and fat compartments in MR body-images is laborious and time-consuming, hindering implementation in large cohorts. In the present study, the feasibility and success-rate of a Dixon-based MR scan followed by an intensity-normalised, non-rigid, multi-atlas based segmentation was investigated in a cohort of 3,000 subjects.3,000 participants in the in-depth phenotyping arm of the UK Biobank imaging study underwent a comprehensive MR examination. All subjects were scanned using a 1.5 T MR-scanner with the dual-echo Dixon Vibe protocol, covering neck to knees. Subjects were scanned with six slabs in supine position, without localizer. Automated body composition analysis was performed using the AMRA Profiler™ system, to segment and quantify visceral adipose tissue (VAT, abdominal subcutaneous adipose tissue (ASAT and thigh muscles. Technical quality assurance was performed and a standard set of acceptance/rejection criteria was established. Descriptive statistics were calculated for all volume measurements and quality assurance metrics.Of the 3,000 subjects, 2,995 (99.83% were analysable for body fat, 2,828 (94.27% were analysable when body fat and one thigh was included, and 2,775 (92.50% were fully analysable for body fat and both thigh muscles. Reasons for not being able to analyse datasets were mainly due to missing slabs in the acquisition, or patient positioned so that large parts of the volume was outside of the field-of-view.In conclusion, this study showed that the rapid UK Biobank MR-protocol was well tolerated by most subjects and sufficiently robust to achieve very high success-rate for body composition analysis. This research has been conducted using the UK Biobank Resource.

  20. Quantification of organ motion based on an adaptive image-based scale invariant feature method

    Energy Technology Data Exchange (ETDEWEB)

    Paganelli, Chiara [Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, piazza L. Da Vinci 32, Milano 20133 (Italy); Peroni, Marta [Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, piazza L. Da Vinci 32, Milano 20133, Italy and Paul Scherrer Institut, Zentrum für Protonentherapie, WMSA/C15, CH-5232 Villigen PSI (Italy); Baroni, Guido; Riboldi, Marco [Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, piazza L. Da Vinci 32, Milano 20133, Italy and Bioengineering Unit, Centro Nazionale di Adroterapia Oncologica, strada Campeggi 53, Pavia 27100 (Italy)

    2013-11-15

    Purpose: The availability of corresponding landmarks in IGRT image series allows quantifying the inter and intrafractional motion of internal organs. In this study, an approach for the automatic localization of anatomical landmarks is presented, with the aim of describing the nonrigid motion of anatomo-pathological structures in radiotherapy treatments according to local image contrast.Methods: An adaptive scale invariant feature transform (SIFT) was developed from the integration of a standard 3D SIFT approach with a local image-based contrast definition. The robustness and invariance of the proposed method to shape-preserving and deformable transforms were analyzed in a CT phantom study. The application of contrast transforms to the phantom images was also tested, in order to verify the variation of the local adaptive measure in relation to the modification of image contrast. The method was also applied to a lung 4D CT dataset, relying on manual feature identification by an expert user as ground truth. The 3D residual distance between matches obtained in adaptive-SIFT was then computed to verify the internal motion quantification with respect to the expert user. Extracted corresponding features in the lungs were used as regularization landmarks in a multistage deformable image registration (DIR) mapping the inhale vs exhale phase. The residual distances between the warped manual landmarks and their reference position in the inhale phase were evaluated, in order to provide a quantitative indication of the registration performed with the three different point sets.Results: The phantom study confirmed the method invariance and robustness properties to shape-preserving and deformable transforms, showing residual matching errors below the voxel dimension. The adapted SIFT algorithm on the 4D CT dataset provided automated and accurate motion detection of peak to peak breathing motion. The proposed method resulted in reduced residual errors with respect to standard SIFT

  1. Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

    Science.gov (United States)

    Rohlfing, Torsten; Brandt, Robert; Menzel, Randolf; Maurer, Calvin R

    2004-04-01

    This paper evaluates strategies for atlas selection in atlas-based segmentation of three-dimensional biomedical images. Segmentation by intensity-based nonrigid registration to atlas images is applied to confocal microscopy images acquired from the brains of 20 bees. This paper evaluates and compares four different approaches for atlas image selection: registration to an individual atlas image (IND), registration to an average-shape atlas image (AVG), registration to the most similar image from a database of individual atlas images (SIM), and registration to all images from a database of individual atlas images with subsequent multi-classifier decision fusion (MUL). The MUL strategy is a novel application of multi-classifier techniques, which are common in pattern recognition, to atlas-based segmentation. For each atlas selection strategy, the segmentation performance of the algorithm was quantified by the similarity index (SI) between the automatic segmentation result and a manually generated gold standard. The best segmentation accuracy was achieved using the MUL paradigm, which resulted in a mean similarity index value between manual and automatic segmentation of 0.86 (AVG, 0.84; SIM, 0.82; IND, 0.81). The superiority of the MUL strategy over the other three methods is statistically significant (two-sided paired t test, P strategies performed better than the best possible SIM and IND strategies with optimal a posteriori atlas selection (mean similarity index for optimal SIM, 0.83; for optimal IND, 0.81). Our findings show that atlas selection is an important issue in atlas-based segmentation and that, in particular, multi-classifier techniques can substantially increase the segmentation accuracy.

  2. SU-E-J-119: Head-And-Neck Digital Phantoms for Geometric and Dosimetric Uncertainty Evaluation of CT-CBCT Deformable Image Registration

    Energy Technology Data Exchange (ETDEWEB)

    Shen, Z; Koyfman, S; Xia, P [The Cleveland Clinic, Cleveland, OH (United States); Bzdusek, K [Philips, Fitchburg, WI (United States)

    2015-06-15

    Purpose: To evaluate geometric and dosimetric uncertainties of CT-CBCT deformable image registration (DIR) algorithms using digital phantoms generated from real patients. Methods: We selected ten H&N cancer patients with adaptive IMRT. For each patient, a planning CT (CT1), a replanning CT (CT2), and a pretreatment CBCT (CBCT1) were used as the basis for digital phantom creation. Manually adjusted meshes were created for selected ROIs (e.g. PTVs, brainstem, spinal cord, mandible, and parotids) on CT1 and CT2. The mesh vertices were input into a thin-plate spline algorithm to generate a reference displacement vector field (DVF). The reference DVF was applied to CBCT1 to create a simulated mid-treatment CBCT (CBCT2). The CT-CBCT digital phantom consisted of CT1 and CBCT2, which were linked by the reference DVF. Three DIR algorithms (Demons, B-Spline, and intensity-based) were applied to these ten digital phantoms. The images, ROIs, and volumetric doses were mapped from CT1 to CBCT2 using the DVFs computed by these three DIRs and compared to those mapped using the reference DVF. Results: The average Dice coefficients for selected ROIs were from 0.83 to 0.94 for Demons, from 0.82 to 0.95 for B-Spline, and from 0.67 to 0.89 for intensity-based DIR. The average Hausdorff distances for selected ROIs were from 2.4 to 6.2 mm for Demons, from 1.8 to 5.9 mm for B-Spline, and from 2.8 to 11.2 mm for intensity-based DIR. The average absolute dose errors for selected ROIs were from 0.7 to 2.1 Gy for Demons, from 0.7 to 2.9 Gy for B- Spline, and from 1.3 to 4.5 Gy for intensity-based DIR. Conclusion: Using clinically realistic CT-CBCT digital phantoms, Demons and B-Spline were shown to have similar geometric and dosimetric uncertainties while intensity-based DIR had the worst uncertainties. CT-CBCT DIR has the potential to provide accurate CBCT-based dose verification for H&N adaptive radiotherapy. Z Shen: None; K Bzdusek: an employee of Philips Healthcare; S Koyfman: None; P Xia

  3. Sub-surface Elasticity Imaging Sensor based on Bio-Optics with Polydimethylsiloxane (PDMS

    Directory of Open Access Journals (Sweden)

    Jong-Ha LEE

    2015-03-01

    Full Text Available A novel tactile sensor capable of measuring material constants of the sensed object has been fabricated and demonstrated in the current study. Although many tactile sensors have been previously developed, the resolution of these measurements is still fairly low compared to the sensation of human touch. The tactile sensor we propose is comprised of an elastic optical waveguide unit, a high resolution CCD camera unit, and an LED light source. The sensing element is formed on Polydimethylsiloxane (PDMS and is illuminated along its four edges by LED light sources. The sensor operates on the principle of total internal reflection within an optical waveguide. Since the waveguide is surrounded by air, having a lower refractive index than the waveguide, the incident light directed into the waveguide remains contained within it. When an object compresses the waveguide, the contact area of the waveguide deforms and causes the light to scatter. Since the scattered light is directly captured by a CCD camera, the tactile resolution of the proposed sensor is based on the resolution of the camera. The normal force is detected from the integrated gray scale values of bright pixels emitted from the deformed area of the optical waveguide. Non-rigid point matching algorithm with Laplacian smoothing spline is used to estimate the displacement of control points between 3D rendered tactile images captured under different compression ratios. The strain experienced through the sensed object is derived from a function of the associated displacement. Experiments were conducted to demonstrate the ability of the proposed sensing strategy in measuring Young’s modulus of polymer samples within 4.23 % error.

  4. Biped Robot Gait Planning Based on 3D Linear Inverted Pendulum Model

    Science.gov (United States)

    Yu, Guochen; Zhang, Jiapeng; Bo, Wu

    2018-01-01

    In order to optimize the biped robot’s gait, the biped robot’s walking motion is simplify to the 3D linear inverted pendulum motion mode. The Center of Mass (CoM) locus is determined from the relationship between CoM and the Zero Moment Point (ZMP) locus. The ZMP locus is planned in advance. Then, the forward gait and lateral gait are simplified as connecting rod structure. Swing leg trajectory using B-spline interpolation. And the stability of the walking process is discussed in conjunction with the ZMP equation. Finally the system simulation is carried out under the given conditions to verify the validity of the proposed planning method.

  5. Research on Rigid Body Motion Tracing in Space based on NX MCD

    Science.gov (United States)

    Wang, Junjie; Dai, Chunxiang; Shi, Karen; Qin, Rongkang

    2018-03-01

    In the use of MCD (Mechatronics Concept Designer) which is a module belong to SIEMENS Ltd industrial design software UG (Unigraphics NX), user can define rigid body and kinematic joint to make objects move according to the existing plan in simulation. At this stage, user may have the desire to see the path of some points in the moving object intuitively. In response to this requirement, this paper will compute the pose through the transformation matrix which can be available from the solver engine, and then fit these sampling points through B-spline curve. Meanwhile, combined with the actual constraints of rigid bodies, the traditional equal interval sampling strategy was optimized. The result shown that this method could satisfy the demand and make up for the deficiency in traditional sampling method. User can still edit and model on this 3D curve. Expected result has been achieved.

  6. A novel flexible framework with automatic feature correspondence optimization for nonrigid registration in radiotherapy

    NARCIS (Netherlands)

    E.M. Vásquez Osorio (Eliana); M.S. Hoogeman (Mischa); L. Bondar (Luiza); P.C. Levendag (Peter); B.J.M. Heijmen (Ben)

    2009-01-01

    textabstractTechnical improvements in planning and dose delivery and in verification of patient positioning have substantially widened the therapeutic window for radiation treatment of cancer. However, changes in patient anatomy during the treatment limit the exploitation of these new techniques. To

  7. Non-solid non-rigid optics for high-power laser systems

    CSIR Research Space (South Africa)

    Michaelis, MM

    2006-06-14

    Full Text Available for manufacturing positron sources for PET (positron emission tomography), then acceleration lengths of tens of centimeters will be needed and high plasma densities (ne ≈ 1020 cm−3). This demands some form of high density laser wave-guiding through narrow channels...

  8. Transverse multibunch modes for non-rigid bunches, including mode coupling

    Energy Technology Data Exchange (ETDEWEB)

    Berg, J.S.; Ruth, R.D. [Stanford Linear Accelerator Center, Menlo Park, CA (United States)

    1996-08-01

    A method for computing transverse multibunch growth rates and frequency shifts in rings, which has been described previously, is applied to the PEP-II B factory. The method allows multibunch modes with different internal-bunch oscillation modes to couple to one another, similar to single-bunch mode coupling. Including coupling between the multibunch modes gives effects similar to those seen in single-bunch mode coupling. These effects occur at currents that are lower than the single-bunch mode coupling threshold. (author)

  9. Fluid-structure interaction in non-rigid pipeline systems - large scale validation experiments

    International Nuclear Information System (INIS)

    Heinsbroek, A.G.T.J.; Kruisbrink, A.C.H.

    1993-01-01

    The fluid-structure interaction computer code FLUSTRIN, developed by DELFT HYDRAULICS, enables the user to determine dynamic fluid pressures, structural stresses and displacements in a liquid-filled pipeline system under transient conditions. As such, the code is a useful tool to process and mechanical engineers in the safe design and operation of pipeline systems in nuclear power plants. To validate FLUSTRIN, experiments have been performed in a large scale 3D test facility. The test facility consists of a flexible pipeline system which is suspended by wires, bearings and anchors. Pressure surges, which excite the system, are generated by a fast acting shut-off valve. Dynamic pressures, structural displacements and strains (in total 70 signals) have been measured under well determined initial and boundary conditions. The experiments have been simulated with FLUSTRIN, which solves the acoustic equations using the method of characteristics (fluid) and the finite element method (structure). The agreement between experiments and simulations is shown to be good: frequencies, amplitudes and wave phenomena are well predicted by the numerical simulations. It is demonstrated that an uncoupled water hammer computation would render unreliable and useless results. (author)

  10. Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors.

    Science.gov (United States)

    Ruiz, Antonio; Ujaldon, Manuel; Cooper, Lee; Huang, Kun

    2009-04-01

    Microscopic imaging is an important tool for characterizing tissue morphology and pathology. 3D reconstruction and visualization of large sample tissue structure requires registration of large sets of high-resolution images. However, the scale of this problem presents a challenge for automatic registration methods. In this paper we present a novel method for efficient automatic registration using graphics processing units (GPUs) and parallel programming. Comparing a C++ CPU implementation with Compute Unified Device Architecture (CUDA) libraries and pthreads running on GPU we achieve a speed-up factor of up to 4.11× with a single GPU and 6.68× with a GPU pair. We present execution times for a benchmark composed of two sets of large-scale images: mouse placenta (16 K × 16 K pixels) and breast cancer tumors (23 K × 62 K pixels). It takes more than 12 hours for the genetic case in C++ to register a typical sample composed of 500 consecutive slides, which was reduced to less than 2 hours using two GPUs, in addition to a very promising scalability for extending those gains easily on a large number of GPUs in a distributed system.

  11. Mid-Level Vision and Recognition of Non-Rigid Objects.

    Science.gov (United States)

    1993-01-01

    Technology (1993) Llicenciat en Informatica, Universitat Politecnica de Catalunya (1987) Submitted to the Department of Electrical Engineering and... Balearic Islands University; Consejo Superior de Investiga- ciones Cient cas - the Spanish Research Council; NATO; Real Colegio Complutense; The...in particular, we show that the assignment of an attentional boundary to a region of an image is ill -posed. If the region of attention has an ill - de

  12. Myocardial strain assessment by cine cardiac magnetic resonance imaging using non-rigid registration.

    Science.gov (United States)

    Tsadok, Yossi; Friedman, Zvi; Haluska, Brian A; Hoffmann, Rainer; Adam, Dan

    2016-05-01

    To evaluate a novel post-processing method for assessment of longitudinal mid-myocardial strain in standard cine cardiac magnetic resonance (CMR) imaging sequences. Cine CMR imaging and tagged cardiac magnetic resonance imaging (TMRI) were performed in 15 patients with acute myocardial infarction (AMI) and 15 healthy volunteers served as control group. A second group of 37 post-AMI patients underwent both cine CMR and late gadolinium enhancement (LGE) CMR exams. Speckle tracking echocardiography (STE) was performed in 36 of these patients. Cine CMR, TMRI and STE were analyzed to obtain longitudinal strain. LGE-CMR datasets were analyzed to evaluate scar extent. Comparison of peak systolic strain (PSS) measured from CMR and TMRI yielded a strong correlation (r=0.86, pcine CMR data. The method was found to be highly correlated with strain measurements obtained by TMRI and STE. This tool allows accurate discrimination between different transmurality states of myocardial infarction. Copyright © 2015 Elsevier Inc. All rights reserved.

  13. How to predict the orientation factor of non-rigid macro-synthetic fibre reinforced concrete

    Science.gov (United States)

    Alberti, M. G.; Enfedaque, A.; Gálvez, J. C.

    2017-09-01

    Polyolefin fibre reinforced concrete can met the requirements set in the standards that enable to consider the residual strengths in structural design. Such residual load-bearing capacity of fibre reinforced concrete is assessed by flexural tensile tests in which the presence of fibres can bridge the crack formed and provide strengths that are directly related with the number of fibres and their positioning in the fracture surface. Therefore, the orientation and distribution of the fibres is decisive in the mechanical behaviour of fibre-reinforced concrete and this can be estimated by means of the orientation factor. Several classical models have been extensively used for the case of rigid steel fibres. The increasing interest in structural synthetic fibres that can bend demands new considerations in this matter. A probabilistic model that considers the previous research with stereographical assumptions has been performed allowing the use of fibres that can bend. This study has developed significant tools for design with the aim of predicting such number of fibres crossing a vertical surface using fibre reinforced concrete with steel and polyolefin fibres. The model has been verified with experimental data and represents with accuracy the existence of boundaries, the type of concrete and compaction methods used to cast the moulds.

  14. Non-rigid Point Matching using Topology Preserving Constraints for Medical Computer Vision

    Directory of Open Access Journals (Sweden)

    Jong-Ha Lee

    2017-01-01

    Full Text Available This work presents a novel algorithm of finding correspondence using a relaxation labeling. For the variance experiments, the variance of all algorithms except the proposed algorithm is large. The largest variance of the proposed algorithm is +0.01 in the 0.08 deformation test of a character. Overall, the proposed algorithm outperforms compared to the rest of algorithms. Except the proposed algorithm, matching with neighborhood algorithm shows the best performance except an outlier to data ratio in a character test. The proposed algorithm shows the best performance as well as an outlier to data ratio in a character test.

  15. Atlas-based identification of targets for functional radiosurgery

    International Nuclear Information System (INIS)

    Stancanello, Joseph; Romanelli, Pantaleo; Modugno, Nicola; Cerveri, Pietro; Ferrigno, Giancarlo; Uggeri, Fulvio; Cantore, Giampaolo

    2006-01-01

    Functional disorders of the brain, such as Parkinson's disease, dystonia, epilepsy, and neuropathic pain, may exhibit poor response to medical therapy. In such cases, surgical intervention may become necessary. Modern surgical approaches to such disorders include radio-frequency lesioning and deep brain stimulation (DBS). The subthalamic nucleus (STN) is one of the most useful stereotactic targets available: STN DBS is known to induce substantial improvement in patients with end-stage Parkinson's disease. Other targets include the Globus Pallidus pars interna (GPi) for dystonia and Parkinson's disease, and the centromedian nucleus of the thalamus (CMN) for neuropathic pain. Radiosurgery is an attractive noninvasive alternative to treat some functional brain disorders. The main technical limitation to radiosurgery is that the target can be selected only on the basis of magnetic resonance anatomy without electrophysiological confirmation. The aim of this work is to provide a method for the correct atlas-based identification of the target to be used in functional neurosurgery treatment planning. The coordinates of STN, CMN, and GPi were identified in the Talairach and Tournoux atlas and transformed to the corresponding regions of the Montreal Neurological Institute (MNI) electronic atlas. Binary masks describing the target nuclei were created. The MNI electronic atlas was deformed onto the patient magnetic resonance imaging-T1 scan by applying an affine transformation followed by a local nonrigid registration. The first transformation was based on normalized cross correlation and the second on optimization of a two-part objective function consisting of similarity criteria and weighted regularization. The obtained deformation field was then applied to the target masks. The minimum distance between the surface of an implanted electrode and the surface of the deformed mask was calculated. The validation of the method consisted of comparing the electrode-mask distance to

  16. TU-AB-202-07: A Novel Method for Registration of Mid-Treatment PET/CT Images Under Conditions of Tumor Regression for Patients with Locally Advanced Lung Cancers

    Energy Technology Data Exchange (ETDEWEB)

    Sharifi, Hoda [Department of Radiation Oncology, Henry Ford Health System, Detroit, MI (United States); Department of Physics, Oakland University, Rochester, MI (United States); Zhang, Hong; Jin, Jian-Yyue; Kong, Feng-Ming [Department of Radiation Oncology, GRU Cancer Center, Augusta GA (United States); Chetty, Indrin J [Department of Radiation Oncology, Henry Ford Health System, Detroit, MI (United States); Zhong, Hualiang

    2016-06-15

    Purpose: In PET-guided adaptive radiotherapy (RT), changes in the metabolic activity at individual voxels cannot be derived until the duringtreatment CT images are appropriately registered to pre-treatment CT images. However, deformable image registration (DIR) usually does not preserve tumor volume. This may induce errors when comparing to the target. The aim of this study was to develop a DIR-integrated mechanical modeling technique to track radiation-induced metabolic changes on PET images. Methods: Three patients with non-small cell lung cancer (NSCLC) were treated with adaptive radiotherapy under RTOG 1106. Two PET/CT image sets were acquired 2 weeks before RT and 18 fractions after the start of treatment. DIR was performed to register the during-RT CT to the pre-RT CT using a B-spline algorithm and the resultant displacements in the region of tumor were remodeled using a hybrid finite element method (FEM). Gross tumor volume (GTV) was delineated on the during-RT PET/CT image sets and deformed using the 3D deformation vector fields generated by the CT-based registrations. Metabolic tumor volume (MTV) was calculated using the pre- and during–RT image set. The quality of the PET mapping was evaluated based on the constancy of the mapped MTV and landmark comparison. Results: The B-spline-based registrations changed MTVs by 7.3%, 4.6% and −5.9% for the 3 patients and the correspondent changes for the hybrid FEM method −2.9%, 1% and 6.3%, respectively. Landmark comparisons were used to evaluate the Rigid, B-Spline, and hybrid FEM registrations with the mean errors of 10.1 ± 1.6 mm, 4.4 ± 0.4 mm, and 3.6 ± 0.4 mm for three patients. The hybrid FEM method outperforms the B-Spline-only registration for patients with tumor regression Conclusion: The hybrid FEM modeling technique improves the B-Spline registrations in tumor regions. This technique may help compare metabolic activities between two PET/CT images with regressing tumors. The author gratefully

  17. Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences

    International Nuclear Information System (INIS)

    Khalvati, Farzad; Tizhoosh, Hamid R.; Salmanpour, Aryan; Rahnamayan, Shahryar; Rodrigues, George

    2013-01-01

    Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. Conclusions: The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability

  18. Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences

    Energy Technology Data Exchange (ETDEWEB)

    Khalvati, Farzad, E-mail: farzad.khalvati@uwaterloo.ca; Tizhoosh, Hamid R. [Department of Systems Design Engineering, University of Waterloo, Waterloo, Ontario N2L 3G1 (Canada); Salmanpour, Aryan; Rahnamayan, Shahryar [Department of Engineering and Applied Science, University of Ontario Institute of Technology, Oshawa, Ontario L1H 7K4 (Canada); Rodrigues, George [Department of Radiation Oncology, London Regional Cancer Program, London, Ontario N6C 2R6, Canada and Department of Epidemiology/Biostatistics, University of Western Ontario, London, Ontario N6A 3K7 (Canada)

    2013-12-15

    Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. Conclusions: The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.

  19. Cationic lipids bearing succinic-based, acyclic and macrocyclic hydrophobic domains: Synthetic studies and in vitro gene transfer.

    Science.gov (United States)

    Jubeli, Emile; Maginty, Amanda B; Khalique, Nada Abdul; Raju, Liji; Nicholson, David G; Larsen, Helge; Pungente, Michael D; Goldring, William P D

    2017-01-05

    In this communication we describe the construction of four succinic-based cationic lipids, their formulation with plasmid DNA (pDNA), and an evaluation of their in vitro gene delivery into Chinese hamster ovarian (CHO-K1) cells. The cationic lipids employed in this work possess either a dimethylamine or trimethylamine headgroup, and a macrocyclic or an acyclic hydrophobic domain composed of, or derived from two 16-atom, succinic-based acyl chains. The synthesized lipids and a co-lipid of neutral charge, either cholesterol or 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE), were formulated in an overall 3:2 cationic-to-neutral lipid molar ratio, then complexed with plasmid DNA (pDNA). The relative transfection performance was evaluated via a comparison between matched versus mismatched formulations defined by the rigidity relationship between the lipids employed. Gel electrophoresis was used to characterize the binding of the lipid formulations with plasmid DNA and the relative degree of plasmid degradation using a DNase I degradation assay. Small angle X-ray diffraction (SAXD) was employed to characterize the packing morphology of the lipid-DNA complexes. In general, the succinic unit embedded within the hydrophobic domain of the cationic lipids was found to improve lipid hydration. The transfection assays revealed a general trend in which mismatched formulations that employed a rigid lipid combined with a non-rigid (or flexible) lipid, outperformed the matched formulations. The results from this work suggest that the design of the cationic lipid structure and the composition of the lipoplex formulation play key roles in governing the transfection performance of nonviral gene delivery agents. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  20. TH-CD-206-02: BEST IN PHYSICS (IMAGING): 3D Prostate Segmentation in MR Images Using Patch-Based Anatomical Signature

    International Nuclear Information System (INIS)

    Yang, X; Jani, A; Rossi, P; Mao, H; Curran, W; Liu, T

    2016-01-01

    Purpose: MRI has shown promise in identifying prostate tumors with high sensitivity and specificity for the detection of prostate cancer. Accurate segmentation of the prostate plays a key role various tasks: to accurately localize prostate boundaries for biopsy needle placement and radiotherapy, to initialize multi-modal registration algorithms or to obtain the region of interest for computer-aided detection of prostate cancer. However, manual segmentation during biopsy or radiation therapy can be time consuming and subject to inter- and intra-observer variation. This study’s purpose it to develop an automated method to address this technical challenge. Methods: We present an automated multi-atlas segmentation for MR prostate segmentation using patch-based label fusion. After an initial preprocessing for all images, all the atlases are non-rigidly registered to a target image. And then, the resulting transformation is used to propagate the anatomical structure labels of the atlas into the space of the target image. The top L similar atlases are further chosen by measuring intensity and structure difference in the region of interest around prostate. Finally, using voxel weighting based on patch-based anatomical signature, the label that the majority of all warped labels predict for each voxel is used for the final segmentation of the target image. Results: This segmentation technique was validated with a clinical study of 13 patients. The accuracy of our approach was assessed using the manual segmentation (gold standard). The mean volume Dice Overlap Coefficient was 89.5±2.9% between our and manual segmentation, which indicate that the automatic segmentation method works well and could be used for 3D MRI-guided prostate intervention. Conclusion: We have developed a new prostate segmentation approach based on the optimal feature learning label fusion framework, demonstrated its clinical feasibility, and validated its accuracy. This segmentation technique could be

  1. TH-CD-206-02: BEST IN PHYSICS (IMAGING): 3D Prostate Segmentation in MR Images Using Patch-Based Anatomical Signature

    Energy Technology Data Exchange (ETDEWEB)

    Yang, X; Jani, A; Rossi, P; Mao, H; Curran, W; Liu, T [Emory University, Atlanta, GA (United States)

    2016-06-15

    Purpose: MRI has shown promise in identifying prostate tumors with high sensitivity and specificity for the detection of prostate cancer. Accurate segmentation of the prostate plays a key role various tasks: to accurately localize prostate boundaries for biopsy needle placement and radiotherapy, to initialize multi-modal registration algorithms or to obtain the region of interest for computer-aided detection of prostate cancer. However, manual segmentation during biopsy or radiation therapy can be time consuming and subject to inter- and intra-observer variation. This study’s purpose it to develop an automated method to address this technical challenge. Methods: We present an automated multi-atlas segmentation for MR prostate segmentation using patch-based label fusion. After an initial preprocessing for all images, all the atlases are non-rigidly registered to a target image. And then, the resulting transformation is used to propagate the anatomical structure labels of the atlas into the space of the target image. The top L similar atlases are further chosen by measuring intensity and structure difference in the region of interest around prostate. Finally, using voxel weighting based on patch-based anatomical signature, the label that the majority of all warped labels predict for each voxel is used for the final segmentation of the target image. Results: This segmentation technique was validated with a clinical study of 13 patients. The accuracy of our approach was assessed using the manual segmentation (gold standard). The mean volume Dice Overlap Coefficient was 89.5±2.9% between our and manual segmentation, which indicate that the automatic segmentation method works well and could be used for 3D MRI-guided prostate intervention. Conclusion: We have developed a new prostate segmentation approach based on the optimal feature learning label fusion framework, demonstrated its clinical feasibility, and validated its accuracy. This segmentation technique could be

  2. On the integration of computer aided design and analysis using the finite element absolute nodal coordinate formulation

    International Nuclear Information System (INIS)

    Sanborn, Graham G.; Shabana, Ahmed A.

    2009-01-01

    For almost a decade, the finite element absolute nodal coordinate formulation (ANCF) has been used for both geometry and finite element representations. Because of the ANCF isoparametric property in the cases of beams, plates and shells, ANCF finite elements lend themselves easily to the geometric description of curves and surfaces, as demonstrated in the literature. The ANCF finite elements, therefore, are ideal for what is called isogeometric analysis that aims at the integration ofcomputer aided designandanalysis (ICADA), which involves the integration of what is now split into the separate fields of computer aided design (CAD) and computer aided analysis (CAA). The purpose of this investigation is to establish the relationship between the B-spline and NURBS, which are widely used in the geometric modeling, and the ANCF finite elements. It is shown in this study that by using the ANCF finite elements, one can in a straightforward manner obtain the control point representation required for the Bezier, B-spline and NURBS geometry. To this end, a coordinate transformation is used to write the ANCF gradient vectors in terms of control points. Unifying the CAD and CAA will require the use of such coordinate transformations and their inverses in order to transform control points to position vector gradients which are required for the formulation of the element transformations in the case of discontinuities as well as the formulation of the strain measures and the stress forces based on general continuum mechanics theory. In particular, fully parameterized ANCF finite elements can be very powerful in describing curve, surface, and volume geometry, and they can be effectively used to describe discontinuities while maintaining the many ANCF desirable features that include a constant mass matrix, zero Coriolis and centrifugal forces, no restriction on the amount of rotation or deformation within the finite element, ability for straightforward implementation of general

  3. SU-F-T-47: MRI T2 Exclusive Based Planning Using the Endocavitary/interstitial Gynecological Benidorm Applicator: A Proposed TPS Library and Preplan Efficient Methodology

    International Nuclear Information System (INIS)

    Richart, J; Otal, A; Rodriguez, S; Santos, M; Perez-Calatayud, J

    2016-01-01

    Purpose: ABS and GEC-ESTRO have recommended MRI T2 for image guided brachytherapy. Recently, a new applicator (Benidorm Template, TB) has been developed in our Department (Rodriguez et al 2015). TB is fully MRI compatible because the Titanium needles and it allows the use of intrauterine tandem. Currently, TPS applicators library are not currently available for non-rigid applicators in case of interstitial component as the TB.The purpose of this work is to present the development of a library for the TB, together with its use on a pre-planning technique. Both new goals allow a very efficient and exclusive T2 MRI based planning clinical TB implementation. Methods: The developed library has been implemented in Oncentra Brachytherapy TPS, version 4.3.0 (Elekta) and now is being implemented on Sagiplan v 2.0 TPS (Eckert&Ziegler BEBIG). To model the TB, free and open software named FreeCAD and MeshLab have been used. The reconstruction process is based on three inserted A-vitamin pellets together with the data provided by the free length. The implemented preplanning procedure is as follow: 1) A MRI T2 acquisition is performed with the template in place just with the vaginal cylinder (no uterine tube nor needles). 2) The CTV is drawn and the required needles are selected using a developed Java based application and 3) A post-implant MRI T2 is performed. Results: This library procedure has been successfully applied by now in 25 patients. In this work the use of the developed library will be illustrated with clinical examples. The preplanning procedure has been applied by now in 6 patients, having significant advantages: needle depth estimation, needle positions and number are optimized a priori, time saving, etc Conclusion: TB library and pre-plan techniques are feasible and very efficient and their use will be illustrated in this work.

  4. SU-F-T-47: MRI T2 Exclusive Based Planning Using the Endocavitary/interstitial Gynecological Benidorm Applicator: A Proposed TPS Library and Preplan Efficient Methodology

    Energy Technology Data Exchange (ETDEWEB)

    Richart, J; Otal, A; Rodriguez, S; Santos, M [Clinica Benidorm, Benidorm, Alicante (Spain); Perez-Calatayud, J [Clinica Benidorm, Benidorm, Alicante (Spain); Hospital La Fe, Valencia (Spain)

    2016-06-15

    Purpose: ABS and GEC-ESTRO have recommended MRI T2 for image guided brachytherapy. Recently, a new applicator (Benidorm Template, TB) has been developed in our Department (Rodriguez et al 2015). TB is fully MRI compatible because the Titanium needles and it allows the use of intrauterine tandem. Currently, TPS applicators library are not currently available for non-rigid applicators in case of interstitial component as the TB.The purpose of this work is to present the development of a library for the TB, together with its use on a pre-planning technique. Both new goals allow a very efficient and exclusive T2 MRI based planning clinical TB implementation. Methods: The developed library has been implemented in Oncentra Brachytherapy TPS, version 4.3.0 (Elekta) and now is being implemented on Sagiplan v 2.0 TPS (Eckert&Ziegler BEBIG). To model the TB, free and open software named FreeCAD and MeshLab have been used. The reconstruction process is based on three inserted A-vitamin pellets together with the data provided by the free length. The implemented preplanning procedure is as follow: 1) A MRI T2 acquisition is performed with the template in place just with the vaginal cylinder (no uterine tube nor needles). 2) The CTV is drawn and the required needles are selected using a developed Java based application and 3) A post-implant MRI T2 is performed. Results: This library procedure has been successfully applied by now in 25 patients. In this work the use of the developed library will be illustrated with clinical examples. The preplanning procedure has been applied by now in 6 patients, having significant advantages: needle depth estimation, needle positions and number are optimized a priori, time saving, etc Conclusion: TB library and pre-plan techniques are feasible and very efficient and their use will be illustrated in this work.

  5. Discontinuous Petrov-Galerkin method based on the optimal test space norm for steady transport problems in one space dimension

    KAUST Repository

    Niemi, Antti

    2013-05-01

    We revisit the finite element analysis of convection-dominated flow problems within the recently developed Discontinuous Petrov-Galerkin (DPG) variational framework. We demonstrate how test function spaces that guarantee numerical stability can be computed automatically with respect to the optimal test space norm. This makes the DPG method not only stable but also robust, that is, uniformly stable with respect to the Péclet number in the current application. We employ discontinuous piecewise Bernstein polynomials as trial functions and construct a subgrid discretization that accounts for the singular perturbation character of the problem to resolve the corresponding optimal test functions. We also show that a smooth B-spline basis has certain computational advantages in the subgrid discretization. The overall effectiveness of the algorithm is demonstrated on two problems for the linear advection-diffusion equation. © 2011 Elsevier B.V.

  6. An Atlas-Based Electron Density Mapping Method for Magnetic Resonance Imaging (MRI)-Alone Treatment Planning and Adaptive MRI-Based Prostate Radiation Therapy

    International Nuclear Information System (INIS)

    Dowling, Jason A.; Lambert, Jonathan; Parker, Joel; Salvado, Olivier; Fripp, Jurgen; Capp, Anne; Wratten, Chris; Denham, James W.; Greer, Peter B.

    2012-01-01

    Purpose: Prostate radiation therapy dose planning directly on magnetic resonance imaging (MRI) scans would reduce costs and uncertainties due to multimodality image registration. Adaptive planning using a combined MRI-linear accelerator approach will also require dose calculations to be performed using MRI data. The aim of this work was to develop an atlas-based method to map realistic electron densities to MRI scans for dose calculations and digitally reconstructed radiograph (DRR) generation. Methods and Materials: Whole-pelvis MRI and CT scan data were collected from 39 prostate patients. Scans from 2 patients showed significantly different anatomy from that of the remaining patient population, and these patients were excluded. A whole-pelvis MRI atlas was generated based on the manually delineated MRI scans. In addition, a conjugate electron-density atlas was generated from the coregistered computed tomography (CT)-MRI scans. Pseudo-CT scans for each patient were automatically generated by global and nonrigid registration of the MRI atlas to the patient MRI scan, followed by application of the same transformations to the electron-density atlas. Comparisons were made between organ segmentations by using the Dice similarity coefficient (DSC) and point dose calculations for 26 patients on planning CT and pseudo-CT scans. Results: The agreement between pseudo-CT and planning CT was quantified by differences in the point dose at isocenter and distance to agreement in corresponding voxels. Dose differences were found to be less than 2%. Chi-squared values indicated that the planning CT and pseudo-CT dose distributions were equivalent. No significant differences (p > 0.9) were found between CT and pseudo-CT Hounsfield units for organs of interest. Mean ± standard deviation DSC scores for the atlas-based segmentation of the pelvic bones were 0.79 ± 0.12, 0.70 ± 0.14 for the prostate, 0.64 ± 0.16 for the bladder, and 0.63 ± 0.16 for the rectum. Conclusions: The

  7. Hyperspectral Imaging for Cancer Surgical Margin Delineation: Registration of Hyperspectral and Histological Images.

    Science.gov (United States)

    Lu, Guolan; Halig, Luma; Wang, Dongsheng; Chen, Zhuo Georgia; Fei, Baowei

    2014-03-12

    The determination of tumor margins during surgical resection remains a challenging task. A complete removal of malignant tissue and conservation of healthy tissue is important for the preservation of organ function, patient satisfaction, and quality of life. Visual inspection and palpation is not sufficient for discriminating between malignant and normal tissue types. Hyperspectral imaging (HSI) technology has the potential to noninvasively delineate surgical tumor margin and can be used as an intra-operative visual aid tool. Since histological images provide the ground truth of cancer margins, it is necessary to warp the cancer regions in ex vivo histological images back to in vivo hyperspectral images in order to validate the tumor margins detected by HSI and to optimize the imaging parameters. In this paper, principal component analysis (PCA) is utilized to extract the principle component bands of the HSI images, which is then used to register HSI images with the corresponding histological image. Affine registration is chosen to model the global transformation. A B-spline free form deformation (FFD) method is used to model the local non-rigid deformation. Registration experiment was performed on animal hyperspectral and histological images. Experimental results from animals demonstrated the feasibility of the hyperspectral imaging method for cancer margin detection.

  8. Temporal regularization of ultrasound-based liver motion estimation for image-guided radiation therapy

    Energy Technology Data Exchange (ETDEWEB)

    O’Shea, Tuathan P., E-mail: tuathan.oshea@icr.ac.uk; Bamber, Jeffrey C.; Harris, Emma J. [Joint Department of Physics, The Institute of Cancer Research and The Royal Marsden NHS foundation Trust, Sutton, London SM2 5PT (United Kingdom)

    2016-01-15

    Purpose: Ultrasound-based motion estimation is an expanding subfield of image-guided radiation therapy. Although ultrasound can detect tissue motion that is a fraction of a millimeter, its accuracy is variable. For controlling linear accelerator tracking and gating, ultrasound motion estimates must remain highly accurate throughout the imaging sequence. This study presents a temporal regularization method for correlation-based template matching which aims to improve the accuracy of motion estimates. Methods: Liver ultrasound sequences (15–23 Hz imaging rate, 2.5–5.5 min length) from ten healthy volunteers under free breathing were used. Anatomical features (blood vessels) in each sequence were manually annotated for comparison with normalized cross-correlation based template matching. Five sequences from a Siemens Acuson™ scanner were used for algorithm development (training set). Results from incremental tracking (IT) were compared with a temporal regularization method, which included a highly specific similarity metric and state observer, known as the α–β filter/similarity threshold (ABST). A further five sequences from an Elekta Clarity™ system were used for validation, without alteration of the tracking algorithm (validation set). Results: Overall, the ABST method produced marked improvements in vessel tracking accuracy. For the training set, the mean and 95th percentile (95%) errors (defined as the difference from manual annotations) were 1.6 and 1.4 mm, respectively (compared to 6.2 and 9.1 mm, respectively, for IT). For each sequence, the use of the state observer leads to improvement in the 95% error. For the validation set, the mean and 95% errors for the ABST method were 0.8 and 1.5 mm, respectively. Conclusions: Ultrasound-based motion estimation has potential to monitor liver translation over long time periods with high accuracy. Nonrigid motion (strain) and the quality of the ultrasound data are likely to have an impact on tracking

  9. Global, regional, and national levels and trends in under-5 mortality between 1990 and 2015, with scenario-based projections to 2030: a systematic analysis by the UN Inter-agency Group for Child Mortality Estimation.

    Science.gov (United States)

    You, Danzhen; Hug, Lucia; Ejdemyr, Simon; Idele, Priscila; Hogan, Daniel; Mathers, Colin; Gerland, Patrick; New, Jin Rou; Alkema, Leontine

    2015-12-05

    In 2000, world leaders agreed on the Millennium Development Goals (MDGs). MDG 4 called for a two-thirds reduction in the under-5 mortality rate between 1990 and 2015. We aimed to estimate levels and trends in under-5 mortality for 195 countries from 1990 to 2015 to assess MDG 4 achievement and then intended to project how various post-2015 targets and observed rates of change will affect the burden of under-5 deaths from 2016 to 2030. We updated the UN Inter-agency Group for Child Mortality Estimation (UN IGME) database with 5700 country-year datapoints. As of July, 2015, the database contains about 17 000 country-year datapoints for mortality of children younger than 5 years for 195 countries, and includes all available nationally-representative data from vital registration systems, population censuses, household surveys, and sample registration systems. We used these data to generate estimates, with uncertainty intervals, of under-5 (age 0-4 years) mortality using a Bayesian B-spline bias-reduction model (B3 model). This model includes a data model to adjust for systematic biases associated with different types of data sources. To provide insights into the global and regional burden of under-5 deaths associated with post-2015 targets, we constructed five scenario-based projections for under-5 mortality from 2016 to 2030 and estimated national, regional, and global under-5 mortality rates up to 2030 for each scenario. The global under-5 mortality rate has fallen from 90·6 deaths per 1000 livebirths (90% uncertainty interval 89·3-92·2) in 1990 to 42·5 (40·9-45·6) in 2015. During the same period, the annual number of under-5 deaths worldwide dropped from 12·7 million (12·6 million-13·0 million) to 5·9 million (5·7 million-6·4 million). The global under-5 mortality rate reduced by 53% (50-55%) in the past 25 years and therefore missed the MDG 4 target. Based on point estimates, two regions-east Asia and the Pacific, and Latin America and the Caribbean

  10. High-performance GPU-based rendering for real-time, rigid 2D/3D-image registration and motion prediction in radiation oncology

    Science.gov (United States)

    Spoerk, Jakob; Gendrin, Christelle; Weber, Christoph; Figl, Michael; Pawiro, Supriyanto Ardjo; Furtado, Hugo; Fabri, Daniella; Bloch, Christoph; Bergmann, Helmar; Gröller, Eduard; Birkfellner, Wolfgang

    2012-01-01

    A common problem in image-guided radiation therapy (IGRT) of lung cancer as well as other malignant diseases is the compensation of periodic and aperiodic motion during dose delivery. Modern systems for image-guided radiation oncology allow for the acquisition of cone-beam computed tomography data in the treatment room as well as the acquisition of planar radiographs during the treatment. A mid-term research goal is the compensation of tumor target volume motion by 2D/3D registration. In 2D/3D registration, spatial information on organ location is derived by an iterative comparison of perspective volume renderings, so-called digitally rendered radiographs (DRR) from computed tomography volume data, and planar reference x-rays. Currently, this rendering process is very time consuming, and real-time registration, which should at least provide data on organ position in less than a second, has not come into existence. We present two GPU-based rendering algorithms which generate a DRR of 512 × 512 pixels size from a CT dataset of 53 MB size at a pace of almost 100 Hz. This rendering rate is feasible by applying a number of algorithmic simplifications which range from alternative volume-driven rendering approaches – namely so-called wobbled splatting – to sub-sampling of the DRR-image by means of specialized raycasting techniques. Furthermore, general purpose graphics processing unit (GPGPU) programming paradigms were consequently utilized. Rendering quality and performance as well as the influence on the quality and performance of the overall registration process were measured and analyzed in detail. The results show that both methods are competitive and pave the way for fast motion compensation by rigid and possibly even non-rigid 2D/3D registration and, beyond that, adaptive filtering of motion models in IGRT. PMID:21782399

  11. Fault Diagnosis and Fault Tolerant Control for Non-Gaussian Singular Time-Delayed Stochastic Distribution Systems with Disturbance Based on the Rational Square-Root Model

    Directory of Open Access Journals (Sweden)

    Yuancheng Sun

    2016-01-01

    Full Text Available For the non-Gaussian singular time-delayed stochastic distribution control (SDC system with unknown external disturbance where the output probability density function (PDF is approximated by the rational square-root B-spline basis function, a robust fault diagnosis and fault tolerant control algorithm is presented. A full-order observer is constructed to estimate the exogenous disturbance and an adaptive observer is used to estimate the fault size. A fault tolerant tracking controller is designed using the feedback of distribution tracking error, fault, and disturbance estimation to let the postfault output PDF still track desired distribution. Finally, a simulation example is included to illustrate the effectiveness of the proposed algorithms and encouraging results have been obtained.

  12. A novel registration-based methodology for prediction of trabecular bone fabric from clinical QCT: A comprehensive analysis.

    Science.gov (United States)

    Chandran, Vimal; Reyes, Mauricio; Zysset, Philippe

    2017-01-01

    Osteoporosis leads to hip fractures in aging populations and is diagnosed by modern medical imaging techniques such as quantitative computed tomography (QCT). Hip fracture sites involve trabecular bone, whose strength is determined by volume fraction and orientation, known as fabric. However, bone fabric cannot be reliably assessed in clinical QCT images of proximal femur. Accordingly, we propose a novel registration-based estimation of bone fabric designed to preserve tensor properties of bone fabric and to map bone fabric by a global and local decomposition of the gradient of a non-rigid image registration transformation. Furthermore, no comprehensive analysis on the critical components of this methodology has been previously conducted. Hence, the aim of this work was to identify the best registration-based strategy to assign bone fabric to the QCT image of a patient's proximal femur. The normalized correlation coefficient and curvature-based regularization were used for image-based registration and the Frobenius norm of the stretch tensor of the local gradient was selected to quantify the distance among the proximal femora in the population. Based on this distance, closest, farthest and mean femora with a distinction of sex were chosen as alternative atlases to evaluate their influence on bone fabric prediction. Second, we analyzed different tensor mapping schemes for bone fabric prediction: identity, rotation-only, rotation and stretch tensor. Third, we investigated the use of a population average fabric atlas. A leave one out (LOO) evaluation study was performed with a dual QCT and HR-pQCT database of 36 pairs of human femora. The quality of the fabric prediction was assessed with three metrics, the tensor norm (TN) error, the degree of anisotropy (DA) error and the angular deviation of the principal tensor direction (PTD). The closest femur atlas (CTP) with a full rotation (CR) for fabric mapping delivered the best results with a TN error of 7.3 ± 0.9%, a DA

  13. Simulation of laminar and turbulent concentric pipe flows with the isogeometric variational multiscale method

    KAUST Repository

    Ghaffari Motlagh, Yousef

    2013-01-01

    We present an application of the residual-based variational multiscale modeling methodology to the computation of laminar and turbulent concentric annular pipe flows. Isogeometric analysis is utilized for higher-order approximation of the solution using Non-Uniform Rational B-Splines (NURBS). The ability of NURBS to exactly represent curved geometries makes NURBS-based isogeometric analysis attractive for the application to the flow through annular channels. We demonstrate the applicability of the methodology to both laminar and turbulent flow regimes. © 2012 Elsevier Ltd.

  14. NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.

    Science.gov (United States)

    Pnevmatikakis, Eftychios A; Giovannucci, Andrea

    2017-11-01

    Motion correction is a challenging pre-processing problem that arises early in the analysis pipeline of calcium imaging data sequences. The motion artifacts in two-photon microscopy recordings can be non-rigid, arising from the finite time of raster scanning and non-uniform deformations of the brain medium. We introduce an algorithm for fast Non-Rigid Motion Correction (NoRMCorre) based on template matching. NoRMCorre operates by splitting the field of view (FOV) into overlapping spatial patches along all directions. The patches are registered at a sub-pixel resolution for rigid translation against a regularly updated template. The estimated alignments are subsequently up-sampled to create a smooth motion field for each frame that can efficiently approximate non-rigid artifacts in a piecewise-rigid manner. Existing approaches either do not scale well in terms of computational performance or are targeted to non-rigid artifacts arising just from the finite speed of raster scanning, and thus cannot correct for non-rigid motion observable in datasets from a large FOV. NoRMCorre can be run in an online mode resulting in comparable to or even faster than real time motion registration of streaming data. We evaluate its performance with simple yet intuitive metrics and compare against other non-rigid registration methods on simulated data and in vivo two-photon calcium imaging datasets. Open source Matlab and Python code is also made available. The proposed method and accompanying code can be useful for solving large scale image registration problems in calcium imaging, especially in the presence of non-rigid deformations. Copyright © 2017 The Author(s). Published by Elsevier B.V. All rights reserved.

  15. Numerical solution of the controlled Duffing oscillator by semi-orthogonal spline wavelets

    International Nuclear Information System (INIS)

    Lakestani, M; Razzaghi, M; Dehghan, M

    2006-01-01

    This paper presents a numerical method for solving the controlled Duffing oscillator. The method can be extended to nonlinear calculus of variations and optimal control problems. The method is based upon compactly supported linear semi-orthogonal B-spline wavelets. The differential and integral expressions which arise in the system dynamics, the performance index and the boundary conditions are converted into some algebraic equations which can be solved for the unknown coefficients. Illustrative examples are included to demonstrate the validity and applicability of the technique

  16. A cubic subdomain Galerkin method over the geometrically graded mesh to the singularly perturbed problem

    Science.gov (United States)

    Hepson, Ozlem Ersoy; Daǧ, Idris

    2018-01-01

    In this paper, a subdomain Galerkin method is set up to find solutions of singularly perturbed boundary value problems which are used widely in many areas such as chemical reactor theory, aerodynamics, quantum mechanics, reaction-diffusion process, optimal control, etc. A combination of the cubic B-spline base functions as an approximation function is used to build up the presented method over the geometrically graded mesh. Thus finer mesh can be established through the end parts of the problem domain where steep solutions exist.

  17. Numerical Solutions of the Coupled Klein-Gordon-Schrand#246;dinger Equations by Differential Quadrature Methods

    Directory of Open Access Journals (Sweden)

    Thoudam Roshan

    2016-10-01

    Full Text Available Numerical solutions of the coupled Klein-Gordon-Schrödinger equations is obtained by using differential quadrature methods based on polynomials and quintic B-spline functions for space discretization and Runge-Kutta fourth order for time discretization. Stability of the schemes are studied using matrix stability analysis. The accuracy and efficiency of the methods are shown by conducting some numerical experiments on test problems. The motion of single soliton and interaction of two solitons are simulated by the proposed methods.

  18. A flexible model for correlated medical costs, with application to medical expenditure panel survey data.

    Science.gov (United States)

    Chen, Jinsong; Liu, Lei; Shih, Ya-Chen T; Zhang, Daowen; Severini, Thomas A

    2016-03-15

    We propose a flexible model for correlated medical cost data with several appealing features. First, the mean function is partially linear. Second, the distributional form for the response is not specified. Third, the covariance structure of correlated medical costs has a semiparametric form. We use extended generalized estimating equations to simultaneously estimate all parameters of interest. B-splines are used to estimate unknown functions, and a modification to Akaike information criterion is proposed for selecting knots in spline bases. We apply the model to correlated medical costs in the Medical Expenditure Panel Survey dataset. Simulation studies are conducted to assess the performance of our method. Copyright © 2015 John Wiley & Sons, Ltd.

  19. Anatomical study of the radius and center of curvature of the distal femoral condyle

    KAUST Repository

    Kosel, Jürgen

    2010-01-01

    In this anatomical study, the anteroposterior curvature of the surface of 16 cadaveric distal femurs was examined in terms of radii and center point. Those two parameters attract high interest due to their significance for total knee arthroplasty. Basically, two different conclusions have been drawn in foregoing studies: (1) The curvature shows a constant radius and (2) the curvature shows a variable radius. The investigations were based on a new method combining three-dimensional laser-scanning and planar geometrical analyses. This method is aimed at providing high accuracy and high local resolution. The high-precision laser scanning enables the exact reproduction of the distal femurs - including their cartilage tissue - as a three-dimensional computer model. The surface curvature was investigated on intersection planes that were oriented perpendicularly to the surgical epicondylar line. Three planes were placed at the central part of each condyle. The intersection of either plane with the femur model was approximated with the help of a b-spline, yielding three b-splines on each condyle. The radii and center points of the circles, approximating the local curvature of the b-splines, were then evaluated. The results from all three b-splines were averaged in order to increase the reliability of the method. The results show the variation in the surface curvatures of the investigated samples of condyles. These variations are expressed in the pattern of the center points and the radii of the curvatures. The standard deviations of the radii for a 90 deg arc on the posterior condyle range from 0.6 mm up to 5.1 mm, with an average of 2.4 mm laterally and 2.2 mm medially. No correlation was found between the curvature of the lateral and medial condyles. Within the range of the investigated 16 samples, the conclusion can be drawn that the condyle surface curvature is not constant and different for all specimens when viewed along the surgical epicondylar axis. For the portion

  20. Value of a probabilistic atlas in medical image segmentation regarding non-rigid registration of abdominal CT scans

    Science.gov (United States)

    Park, Hyunjin; Meyer, Charles R.

    2012-10-01

    A probabilistic atlas provides important information to help segmentation and registration applications in medical image analysis. We construct a probabilistic atlas by picking a target geometry and mapping other training scans onto that target and then summing the results into one probabilistic atlas. By choosing an atlas space close to the desired target, we construct an atlas that represents the population well. Image registration used to map one image geometry onto another is a primary task in atlas building. One of the main parameters of registration is the choice of degrees of freedom (DOFs) of the geometric transform. Herein, we measure the effect of the registration's DOFs on the segmentation performance of the resulting probabilistic atlas. Twenty-three normal abdominal CT scans were used, and four organs (liver, spinal cord, left and right kidneys) were segmented for each scan. A well-known manifold learning method, ISOMAP, was used to find the best target space to build an atlas. In summary, segmentation performance was high for high DOF registrations regardless of the chosen target space, while segmentation performance was lowered for low DOF registrations if a target space was far from the best target space. At the 0.05 level of statistical significance, there were no significant differences at high DOF registrations while there were significant differences at low DOF registrations when choosing different targets.

  1. Comparison of numerical results between related shapes using a non-rigid mapping with statistical quantication of uncertainty

    CSIR Research Space (South Africa)

    Jansen van Rensburg, Gerhardus J

    2011-10-01

    Full Text Available , South-Africa, 2011. [2] O. Panagiotopoulo, Finite Element Analysis (FEA): applying an engineering method to funtional morphology in anthropology and human biology, Annals of Human Biology, 36(5):609-623, 2009. [3] B.G. Richmond, B.W. Wright, I. Grosse, P...

  2. STUDY OF THE CONSTRUCTION OF NON-RIGID ROAD PAVEMENT IN MOUNTAIN AREAS OF THE DAGESTAN REPUBLIC

    Directory of Open Access Journals (Sweden)

    T. G. Gasanov

    2014-01-01

    Full Text Available Currently, an important national goal is to increase road construction with simultaneous improving of the quality, reliability and durability and reducing consumption of scarce materials. In this regard, at the forefront are the problems of scientifically grounded complex calculation methods of building structures for strength and durability, allowing on the basis of a full consideration of the actual condition of the material to make the optimal design of the road pavement.

  3. Robust tracking with spatio-velocity snakes: Kalman filtering approach

    Energy Technology Data Exchange (ETDEWEB)

    Peterfreund, N.

    1998-12-31

    Using results from robust Kalman filtering, we present a new Kalman filter-based snake model for tracking of nonrigid objects in combined spatio-velocity space. The proposed model is the stochastic version of the velocity snake, an active contour model for combined tracking of position and velocity of nonrigid boundaries. The proposed model uses image gradient and optical flow measurements along the contour as system measurements. An optical-flow based measurement error is used to detect and reject image measurements which correspond to image clutter or to other objects. The method was applied to object tracking of both rigid and nonrigid objects, resulting in good tracking results and robustness to image clutter, occlusions and numerical noise. 19 refs., 3 figs.

  4. Robust tracking with spatio-velocity snakes: Kalman filtering approach

    Energy Technology Data Exchange (ETDEWEB)

    Peterfreund, N.

    1997-06-01

    Using results from robust Kalman filtering, the author presents a new Kalman filter-based snake model for tracking of nonrigid objects in combined spatio-velocity space. The proposed model is the stochastic version of the velocity snake, an active contour model for combined tracking of position and velocity of nonrigid boundaries. The proposed model uses image gradient and optical flow measurements along the contour as system measurements. An optical-flow based measurement error is used to detect and reject image measurements which correspond to image clutter or to other objects. The method was applied to object tracking of both rigid and nonrigid objects, resulting in good tracking results and robustness to image clutter, occlusions and numerical noise.

  5. Near Real-Time Assessment of Anatomic and Dosimetric Variations for Head and Neck Radiation Therapy via Graphics Processing Unit–based Dose Deformation Framework

    International Nuclear Information System (INIS)

    Qi, X. Sharon; Santhanam, Anand; Neylon, John; Min, Yugang; Armstrong, Tess; Sheng, Ke; Staton, Robert J.; Pukala, Jason; Pham, Andrew; Low, Daniel A.; Lee, Steve P.; Steinberg, Michael; Manon, Rafael; Chen, Allen M.; Kupelian, Patrick

    2015-01-01

    Purpose: The purpose of this study was to systematically monitor anatomic variations and their dosimetric consequences during intensity modulated radiation therapy (IMRT) for head and neck (H&N) cancer by using a graphics processing unit (GPU)-based deformable image registration (DIR) framework. Methods and Materials: Eleven IMRT H&N patients undergoing IMRT with daily megavoltage computed tomography (CT) and weekly kilovoltage CT (kVCT) scans were included in this analysis. Pretreatment kVCTs were automatically registered with their corresponding planning CTs through a GPU-based DIR framework. The deformation of each contoured structure in the H&N region was computed to account for nonrigid change in the patient setup. The Jacobian determinant of the planning target volumes and the surrounding critical structures were used to quantify anatomical volume changes. The actual delivered dose was calculated accounting for the organ deformation. The dose distribution uncertainties due to registration errors were estimated using a landmark-based gamma evaluation. Results: Dramatic interfractional anatomic changes were observed. During the treatment course of 6 to 7 weeks, the parotid gland volumes changed up to 34.7%, and the center-of-mass displacement of the 2 parotid glands varied in the range of 0.9 to 8.8 mm. For the primary treatment volume, the cumulative minimum and mean and equivalent uniform doses assessed by the weekly kVCTs were lower than the planned doses by up to 14.9% (P=.14), 2% (P=.39), and 7.3% (P=.05), respectively. The cumulative mean doses were significantly higher than the planned dose for the left parotid (P=.03) and right parotid glands (P=.006). The computation including DIR and dose accumulation was ultrafast (∼45 seconds) with registration accuracy at the subvoxel level. Conclusions: A systematic analysis of anatomic variations in the H&N region and their dosimetric consequences is critical in improving treatment efficacy. Nearly real

  6. Near Real-Time Assessment of Anatomic and Dosimetric Variations for Head and Neck Radiation Therapy via Graphics Processing Unit–based Dose Deformation Framework

    Energy Technology Data Exchange (ETDEWEB)

    Qi, X. Sharon, E-mail: xqi@mednet.ucla.edu [Department of Radiation Oncology, University of California Los Angeles, Los Angeles, California (United States); Santhanam, Anand; Neylon, John; Min, Yugang; Armstrong, Tess; Sheng, Ke [Department of Radiation Oncology, University of California Los Angeles, Los Angeles, California (United States); Staton, Robert J.; Pukala, Jason [Department of Radiation Oncology, UF Health Cancer Center - Orlando Health, Orlando, Florida (United States); Pham, Andrew; Low, Daniel A.; Lee, Steve P. [Department of Radiation Oncology, University of California Los Angeles, Los Angeles, California (United States); Steinberg, Michael; Manon, Rafael [Department of Radiation Oncology, UF Health Cancer Center - Orlando Health, Orlando, Florida (United States); Chen, Allen M.; Kupelian, Patrick [Department of Radiation Oncology, University of California Los Angeles, Los Angeles, California (United States)

    2015-06-01

    Purpose: The purpose of this study was to systematically monitor anatomic variations and their dosimetric consequences during intensity modulated radiation therapy (IMRT) for head and neck (H&N) cancer by using a graphics processing unit (GPU)-based deformable image registration (DIR) framework. Methods and Materials: Eleven IMRT H&N patients undergoing IMRT with daily megavoltage computed tomography (CT) and weekly kilovoltage CT (kVCT) scans were included in this analysis. Pretreatment kVCTs were automatically registered with their corresponding planning CTs through a GPU-based DIR framework. The deformation of each contoured structure in the H&N region was computed to account for nonrigid change in the patient setup. The Jacobian determinant of the planning target volumes and the surrounding critical structures were used to quantify anatomical volume changes. The actual delivered dose was calculated accounting for the organ deformation. The dose distribution uncertainties due to registration errors were estimated using a landmark-based gamma evaluation. Results: Dramatic interfractional anatomic changes were observed. During the treatment course of 6 to 7 weeks, the parotid gland volumes changed up to 34.7%, and the center-of-mass displacement of the 2 parotid glands varied in the range of 0.9 to 8.8 mm. For the primary treatment volume, the cumulative minimum and mean and equivalent uniform doses assessed by the weekly kVCTs were lower than the planned doses by up to 14.9% (P=.14), 2% (P=.39), and 7.3% (P=.05), respectively. The cumulative mean doses were significantly higher than the planned dose for the left parotid (P=.03) and right parotid glands (P=.006). The computation including DIR and dose accumulation was ultrafast (∼45 seconds) with registration accuracy at the subvoxel level. Conclusions: A systematic analysis of anatomic variations in the H&N region and their dosimetric consequences is critical in improving treatment efficacy. Nearly real

  7. Comparison of Positron Emission Tomography Quantification Using Magnetic Resonance- and Computed Tomography-Based Attenuation Correction in Physiological Tissues and Lesions: A Whole-Body Positron Emission Tomography/Magnetic Resonance Study in 66 Patients.

    Science.gov (United States)

    Seith, Ferdinand; Gatidis, Sergios; Schmidt, Holger; Bezrukov, Ilja; la Fougère, Christian; Nikolaou, Konstantin; Pfannenberg, Christina; Schwenzer, Nina

    2016-01-01

    Attenuation correction (AC) in fully integrated positron emission tomography (PET)/magnetic resonance (MR) systems plays a key role for the quantification of tracer uptake. The aim of this prospective study was to assess the accuracy of standardized uptake value (SUV) quantification using MR-based AC in direct comparison with computed tomography (CT)-based AC of the same PET data set on a large patient population. Sixty-six patients (22 female; mean [SD], 61 [11] years) were examined by means of combined PET/CT and PET/MR (11C-choline, 18F-FDG, or 68Ga-DOTATATE) subsequently. Positron emission tomography images from PET/MR examinations were corrected with MR-derived AC based on tissue segmentation (PET(MR)). The same PET data were corrected using CT-based attenuation maps (μ-maps) derived from PET/CT after nonrigid registration of the CT to the MR-based μ-map (PET(MRCT)). Positron emission tomography SUVs were quantified placing regions of interest or volumes of interest in 6 different body regions as well as PET-avid lesions, respectively. The relative differences of quantitative PET values when using MR-based AC versus CT-based AC were varying depending on the organs and body regions assessed. In detail, the mean (SD) relative differences of PET SUVs were as follows: -7.8% (11.5%), blood pool; -3.6% (5.8%), spleen; -4.4% (5.6%)/-4.1% (6.2%), liver; -0.6% (5.0%), muscle; -1.3% (6.3%), fat; -40.0% (18.7%), bone; 1.6% (4.4%), liver lesions; -6.2% (6.8%), bone lesions; and -1.9% (6.2%), soft tissue lesions. In 10 liver lesions, distinct overestimations greater than 5% were found (up to 10%). In addition, overestimations were found in 2 bone lesions and 1 soft tissue lesion adjacent to the lung (up to 28.0%). Results obtained using different PET tracers show that MR-based AC is accurate in most tissue types, with SUV deviations generally of less than 10%. In bone, however, underestimations can be pronounced, potentially leading to inaccurate SUV quantifications. In

  8. Parallel mutual information estimation for inferring gene regulatory networks on GPUs

    Directory of Open Access Journals (Sweden)

    Liu Weiguo

    2011-06-01

    Full Text Available Abstract Background Mutual information is a measure of similarity between two variables. It has been widely used in various application domains including computational biology, machine learning, statistics, image processing, and financial computing. Previously used simple histogram based mutual information estimators lack the precision in quality compared to kernel based methods. The recently introduced B-spline function based mutual information estimation method is competitive to the kernel based methods in terms of quality but at a lower computational complexity. Results We present a new approach to accelerate the B-spline function based mutual information estimation algorithm with commodity graphics hardware. To derive an efficient mapping onto this type of architecture, we have used the Compute Unified Device Architecture (CUDA programming model to design and implement a new parallel algorithm. Our implementation, called CUDA-MI, can achieve speedups of up to 82 using double precision on a single GPU compared to a multi-threaded implementation on a quad-core CPU for large microarray datasets. We have used the results obtained by CUDA-MI to infer gene regulatory networks (GRNs from microarray data. The comparisons to existing methods including ARACNE and TINGe show that CUDA-MI produces GRNs of higher quality in less time. Conclusions CUDA-MI is publicly available open-source software, written in CUDA and C++ programming languages. It obtains significant speedup over sequential multi-threaded implementation by fully exploiting the compute capability of commonly used CUDA-enabled low-cost GPUs.

  9. Image-based dose planning of intracavitary brachytherapy: registration of serial-imaging studies using deformable anatomic templates

    International Nuclear Information System (INIS)

    Christensen, Gary E.; Carlson, Blake; Chao, K.S. Clifford; Yin Pen; Grigsby, Perry W.; Nguyen, Kim; Dempsey, James F; Lerma, Fritz A.; Bae, Kyongtae T.; Vannier, Michael W.; Williamson, Jeffrey F.

    2001-01-01

    Purpose: To demonstrate that high-dimensional voxel-to-voxel transformations, derived from continuum mechanics models of the underlying pelvic tissues, can be used to register computed tomography (CT) serial examinations into a single anatomic frame of reference for cumulative dose calculations. Methods and Materials: Three patients with locally advanced cervix cancer were treated with CT-compatible intracavitary (ICT) applicators. Each patient underwent five volumetric CT examinations: before initiating treatment, and immediately before and after the first and second ICT insertions, respectively. Each serial examination was rigidly registered to the patient's first ICT examination by aligning the bony anatomy. Detailed nonrigid alignment for organs (or targets) of interest was subsequently achieved by deforming the CT exams as a viscous-fluid, described by the Navier-Stokes equation, until the coincidence with the corresponding targets on CT image was maximized. In cases where ICT insertion induced very large and topologically complex rearrangements of pelvic organs, e.g., extreme uterine canal reorientation following tandem insertion, a viscous-fluid-landmark transformation was used to produce an initial registration. Results: For all three patients, reasonable registrations for organs (or targets) of interest were achieved. Fluid-landmark initialization was required in 4 of the 11 registrations. Relative to the best rigid bony landmark alignment, the viscous-fluid registration resulted in average soft-tissue displacements from 2.8 to 28.1 mm, and improved organ coincidence from the range of 5.2% to 72.2% to the range of 90.6% to 100%. Compared to the viscous-fluid transformation, global registration of bony anatomy mismatched 5% or more of the contoured organ volumes by 15-25 mm. Conclusion: Pelvic soft-tissue structures undergo large deformations and displacements during the external-beam and multiple-ICT course of radiation therapy for locally advanced cervix

  10. CNNs flag recognition preprocessing scheme based on gray scale stretching and local binary pattern

    Science.gov (United States)

    Gong, Qian; Qu, Zhiyi; Hao, Kun

    2017-07-01

    Flag is a rather special recognition target in image recognition because of its non-rigid features with the location, scale and rotation characteristics. The location change can be handled well by the depth learning algorithm Convolutional Neural Networks (CNNs), but the scale and rotation changes are quite a challenge for CNNs. Since it has good rotation and gray scale invariance, the local binary pattern (LBP) is combined with grayscale stretching and CNNs to make LBP and grayscale stretching as CNNs pretreatment, which can not only significantly improve the efficiency of flag recognition, but can also evaluate the recognition effect through ROC, accuracy, MSE and quality factor.

  11. Stable isogeometric analysis of trimmed geometries

    Science.gov (United States)

    Marussig, Benjamin; Zechner, Jürgen; Beer, Gernot; Fries, Thomas-Peter

    2017-04-01

    We explore extended B-splines as a stable basis for isogeometric analysis with trimmed parameter spaces. The stabilization is accomplished by an appropriate substitution of B-splines that may lead to ill-conditioned system matrices. The construction for non-uniform knot vectors is presented. The properties of extended B-splines are examined in the context of interpolation, potential, and linear elasticity problems and excellent results are attained. The analysis is performed by an isogeometric boundary element formulation using collocation. It is argued that extended B-splines provide a flexible and simple stabilization scheme which ideally suits the isogeometric paradigm.

  12. Gait Parameters Optimization and Real-Time Trajectory Planning for Humanoid Robots

    Science.gov (United States)

    Fan, Shouwen; Sun, Min

    Trajectory planning of humanoid robots not only is required to satisfy kinematic constraints, but also other criteria such as staying balance, having desirable upper and lower postures, having smooth movement etc, is needed to maintain certain properties. In this paper, calculation formulas of driving torque for each joint of humanoid robot are derived based on dynamics equation, mathematic models for gait parameters optimization are established via introducing energy consumption indexes. gait parameters are optimized utilizing genetic algorithm. A new approach for real-time trajectory planning of humanoid robots is proposed based on fuzzy neural network (FNN), Zero Moment Point (ZMP) criteria, B-spline interpolation and inverse displacement analysis model. The minimum energy consumption gait, which similar with human motion, are used to train FNN, b-spline curves are utilized to fit dispersive Center of Gravity (COG) position and body posture datas, based on above models and inverse displacement model, trajectory of COG and desired body posture can be mapped into trajectory of joint space conveniently. Simulation results demonstrate feasibility and effectiveness of above real-time trajectory planning method. Numeric examples are given for illustration.

  13. A novel approach for the global localization problem

    Directory of Open Access Journals (Sweden)

    Abraham Sánchez

    2012-03-01

    Full Text Available Este artículo describe una metodología de planificación, localización y mapeo simultáneos enfocada en el problema de localización global, el robot explora el ambiente eficientemente y también considera los requisitos de un algoritmo de localización y mapeo simultáneos. El método está basado en la generación aleatoria incremental de una estructura de datos llamada árbol aleatorio basado en sensores, la cual representa un mapa de caminos del área explorada con su región segura asociada. Un procedimiento de localización continuo basado encaracterísticas B-splines de la región segura se integró en el esquema.This paper describes a simultaneous planning localization and mapping (SPLAM methodology focussed on the global localization problem, where the robot explores the environment efficiently and also considers the requisites of the simultaneous localization and mapping algorithm. The method is based on the randomized incremental generation of a data structure called Sensor-based Random Tree, which represents a roadmap of the explored area with an associated safe region. A continuous localization procedure based on B-Splines features of the safe region is integrated in the scheme.

  14. Prostate MR image segmentation using 3D active appearance models

    NARCIS (Netherlands)

    Maan, Bianca; van der Heijden, Ferdinand

    2012-01-01

    This paper presents a method for automatic segmentation of the prostate from transversal T2-weighted images based on 3D Active Appearance Models (AAM). The algorithm consist of two stages. Firstly, Shape Context based non-rigid surface registration of the manual segmented images is used to obtain

  15. Constructing IGA-suitable planar parameterization from complex CAD boundary by domain partition and global/local optimization

    Science.gov (United States)

    Xu, Gang; Li, Ming; Mourrain, Bernard; Rabczuk, Timon; Xu, Jinlan; Bordas, Stéphane P. A.

    2018-01-01

    In this paper, we propose a general framework for constructing IGA-suitable planar B-spline parameterizations from given complex CAD boundaries consisting of a set of B-spline curves. Instead of forming the computational domain by a simple boundary, planar domains with high genus and more complex boundary curves are considered. Firstly, some pre-processing operations including B\\'ezier extraction and subdivision are performed on each boundary curve in order to generate a high-quality planar parameterization; then a robust planar domain partition framework is proposed to construct high-quality patch-meshing results with few singularities from the discrete boundary formed by connecting the end points of the resulting boundary segments. After the topology information generation of quadrilateral decomposition, the optimal placement of interior B\\'ezier curves corresponding to the interior edges of the quadrangulation is constructed by a global optimization method to achieve a patch-partition with high quality. Finally, after the imposition of C1=G1-continuity constraints on the interface of neighboring B\\'ezier patches with respect to each quad in the quadrangulation, the high-quality B\\'ezier patch parameterization is obtained by a C1-constrained local optimization method to achieve uniform and orthogonal iso-parametric structures while keeping the continuity conditions between patches. The efficiency and robustness of the proposed method are demonstrated by several examples which are compared to results obtained by the skeleton-based parameterization approach.

  16. Divergence of finite element formulations for inverse problems treated as optimization problems

    International Nuclear Information System (INIS)

    Rivas, Carlos; Barbone, Paul; Oberai, Assad

    2008-01-01

    Many inverse problems are formulated and solved as optimization problems. In this approach, the data mismatch between a predicted field and a measured field is minimized, subject to a constraint. The constraint represents the 'forward' model of the system under consideration. In this paper, the model considered is plane stress incompressible elasticity. This pde is discretized using several standard Galerkin finite element methods. These are known to yield stable and convergent discrete solutions that converge with mesh refinement to the exact solution of the forward problem. It is usually taken for granted that if the constraint equation is discretized by a stable, convergent numerical method, then the inverse problem will also converge to the exact solution with mesh refinement. We show examples in this paper, however, where this is not the case. These are based on inverse problems with interior data, which have provably unique solutions. Even so, the use of classical discretization techniques for the forward constraint within the optimization formulation leads to ill-posed discrete problems. We analyze the discrete systems of equations and show the source of the instability. We discuss variational properties of the continuous inverse optimization problem, and describe a novel B-spline FEM to solve it. We present computational evidence that suggests the B-spline FEM inverse problem solution converges to the exact inverse problem solution with mesh refinement.

  17. Fast fluid registration of medical images

    DEFF Research Database (Denmark)

    Bro-Nielsen, Morten; Gramkow, Claus

    1996-01-01

    This paper offers a new fast algorithm for non-rigid viscous fluid registration of medical images that is at least an order of magnitude faster than the previous method by (Christensen et al., 1994). The core algorithm in the fluid registration method is based on a linear elastic deformation...

  18. Smoothing noisy spectroscopic data with many-knot spline method

    Energy Technology Data Exchange (ETDEWEB)

    Zhu, M.H. [Space Exploration Laboratory, Macau University of Science and Technology, Taipa, Macau (China)], E-mail: peter_zu@163.com; Liu, L.G.; Qi, D.X.; You, Z.; Xu, A.A. [Space Exploration Laboratory, Macau University of Science and Technology, Taipa, Macau (China)

    2008-05-15

    In this paper, we present the development of a many-knot spline method derived to remove the statistical noise in the spectroscopic data. This method is an expansion of the B-spline method. Compared to the B-spline method, the many-knot spline method is significantly faster.

  19. Cardiac motion correction based on partial angle reconstructed images in x-ray CT

    International Nuclear Information System (INIS)

    Kim, Seungeon; Chang, Yongjin; Ra, Jong Beom

    2015-01-01

    Purpose: Cardiac x-ray CT imaging is still challenging due to heart motion, which cannot be ignored even with the current rotation speed of the equipment. In response, many algorithms have been developed to compensate remaining motion artifacts by estimating the motion using projection data or reconstructed images. In these algorithms, accurate motion estimation is critical to the compensated image quality. In addition, since the scan range is directly related to the radiation dose, it is preferable to minimize the scan range in motion estimation. In this paper, the authors propose a novel motion estimation and compensation algorithm using a sinogram with a rotation angle of less than 360°. The algorithm estimates the motion of the whole heart area using two opposite 3D partial angle reconstructed (PAR) images and compensates the motion in the reconstruction process. Methods: A CT system scans the thoracic area including the heart over an angular range of 180° + α + β, where α and β denote the detector fan angle and an additional partial angle, respectively. The obtained cone-beam projection data are converted into cone-parallel geometry via row-wise fan-to-parallel rebinning. Two conjugate 3D PAR images, whose center projection angles are separated by 180°, are then reconstructed with an angular range of β, which is considerably smaller than a short scan range of 180° + α. Although these images include limited view angle artifacts that disturb accurate motion estimation, they have considerably better temporal resolution than a short scan image. Hence, after preprocessing these artifacts, the authors estimate a motion model during a half rotation for a whole field of view via nonrigid registration between the images. Finally, motion-compensated image reconstruction is performed at a target phase by incorporating the estimated motion model. The target phase is selected as that corresponding to a view angle that is orthogonal to the center view angles of

  20. A Variational Approach to Video Registration with Subspace Constraints.

    Science.gov (United States)

    Garg, Ravi; Roussos, Anastasios; Agapito, Lourdes

    2013-01-01

    This paper addresses the problem of non-rigid video registration, or the computation of optical flow from a reference frame to each of the subsequent images in a sequence, when the camera views deformable objects. We exploit the high correlation between 2D trajectories of different points on the same non-rigid surface by assuming that the displacement of any point throughout the sequence can be expressed in a compact way as a linear combination of a low-rank motion basis. This subspace constraint effectively acts as a trajectory regularization term leading to temporally consistent optical flow. We formulate it as a robust soft constraint within a variational framework by penalizing flow fields that lie outside the low-rank manifold. The resulting energy functional can be decoupled into the optimization of the brightness constancy and spatial regularization terms, leading to an efficient optimization scheme. Additionally, we propose a novel optimization scheme for the case of vector valued images, based on the dualization of the data term. This allows us to extend our approach to deal with colour images which results in significant improvements on the registration results. Finally, we provide a new benchmark dataset, based on motion capture data of a flag waving in the wind, with dense ground truth optical flow for evaluation of multi-frame optical flow algorithms for non-rigid surfaces. Our experiments show that our proposed approach outperforms state of the art optical flow and dense non-rigid registration algorithms.

  1. Touch BASE

    CERN Multimedia

    Antonella Del Rosso

    2015-01-01

    In a recent Nature article (see here), the BASE collaboration reported the most precise comparison of the charge-to-mass ratio of the proton to its antimatter equivalent, the antiproton. This result is just the beginning and many more challenges lie ahead.   CERN's AD Hall, where the BASE experiment is set-up. The Baryon Antibaryon Symmetry Experiment (BASE) was approved in June 2013 and was ready to take data in August 2014. During these 14 months, the BASE collaboration worked hard to set up its four cryogenic Penning traps, which are the heart of the whole experiment. As their name indicates, these magnetic devices are used to trap antiparticles – antiprotons coming from the Antiproton Decelerator – and particles of matter – negative hydrogen ions produced in the system by interaction with a degrader that slows the antiprotons down, allowing scientists to perform their measurements. “We had very little time to set up the wh...

  2. A MATLAB-based eye tracking control system using non-invasive helmet head restraint in the macaque.

    Science.gov (United States)

    De Luna, Paolo; Mohamed Mustafar, Mohamed Faiz Bin; Rainer, Gregor

    2014-09-30

    Tracking eye position is vital for behavioral and neurophysiological investigations in systems and cognitive neuroscience. Infrared camera systems which are now available can be used for eye tracking without the need to surgically implant magnetic search coils. These systems are generally employed using rigid head fixation in monkeys, which maintains the eye in a constant position and facilitates eye tracking. We investigate the use of non-rigid head fixation using a helmet that constrains only general head orientation and allows some freedom of movement. We present a MATLAB software solution to gather and process eye position data, present visual stimuli, interact with various devices, provide experimenter feedback and store data for offline analysis. Our software solution achieves excellent timing performance due to the use of data streaming, instead of the traditionally employed data storage mode for processing analog eye position data. We present behavioral data from two monkeys, demonstrating that adequate performance levels can be achieved on a simple fixation paradigm and show how performance depends on parameters such as fixation window size. Our findings suggest that non-rigid head restraint can be employed for behavioral training and testing on a variety of gaze-dependent visual paradigms, reducing the need for rigid head restraint systems for some applications. While developed for macaque monkey, our system of course can work equally well for applications in human eye tracking where head constraint is undesirable. Copyright © 2014. Published by Elsevier B.V.

  3. A GPU based high-resolution multilevel biomechanical head and neck model for validating deformable image registration

    Energy Technology Data Exchange (ETDEWEB)

    Neylon, J., E-mail: jneylon@mednet.ucla.edu; Qi, X.; Sheng, K.; Low, D. A.; Kupelian, P.; Santhanam, A. [Department of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California 90095 (United States); Staton, R.; Pukala, J.; Manon, R. [Department of Radiation Oncology, M.D. Anderson Cancer Center, Orlando, 1440 South Orange Avenue, Orlando, Florida 32808 (United States)

    2015-01-15

    be caused by the biomechanical deformation process. Accuracy and stability of the model response were validated using ground-truth simulations representing soft tissue behavior under local and global deformations. Numerical accuracy of the HN deformations was analyzed by applying nonrigid skeletal transformations acquired from interfraction kVCT images to the model’s skeletal structures and comparing the subsequent soft tissue deformations of the model with the clinical anatomy. Results: The GPU based framework enabled the model deformation to be performed at 60 frames/s, facilitating simulations of posture changes and physiological regressions at interactive speeds. The soft tissue response was accurate with a R{sup 2} value of >0.98 when compared to ground-truth global and local force deformation analysis. The deformation of the HN anatomy by the model agreed with the clinically observed deformations with an average correlation coefficient of 0.956. For a clinically relevant range of posture and physiological changes, the model deformations stabilized with an uncertainty of less than 0.01 mm. Conclusions: Documenting dose delivery for HN radiotherapy is essential accounting for posture and physiological changes. The biomechanical model discussed in this paper was able to deform in real-time, allowing interactive simulations and visualization of such changes. The model would allow patient specific validations of the DIR method and has the potential to be a significant aid in adaptive radiotherapy techniques.

  4. First directional European palaeosecular variation curve for the Neolithic based on archaeomagnetic data

    Science.gov (United States)

    Carrancho, Á.; Villalaín, J. J.; Pavón-Carrasco, F. J.; Osete, M. L.; Straus, L. G.; Vergès, J. M.; Carretero, J. M.; Angelucci, D. E.; González Morales, M. R.; Arsuaga, J. L.; Bermúdez de Castro, J. M.; Carbonell, E.

    2013-10-01

    Neolithic, Chalcolithic and Bronze Age anthropogenic cave sediments from three caves from northern Spain have been palaeomagnetically investigated. 662 oriented specimens corresponding to 39 burning events (ash-carbonaceous couplets) from the three sites with an average of 16 samples per fire were collected. 26 new archaeomagnetic directions have been obtained for the time period ranging from 5500 to 2000 yr cal. BC. These results represent the oldest archaeomagnetic directions obtained from burnt archaeological materials throughout all Western Europe. Magnetisation is carried by pseudo-single domain low-coercivity ferromagnetic minerals (magnetite, magnetite with no significant isomorphous substitution and/or maghaemite). Rock-magnetic experiments indicate a thermoremanent origin of the magnetisation although a thermochemical magnetisation cannot be excluded. Combination of the new data presented here and the recent updated Bulgarian database allows us to propose the first European palaeosecular variation (PSV) curve for the Neolithic. A bootstrap method was applied for the curve construction using penalised cubic B-splines in time. The new palaeosecular variation curve is well constrained from 6000 BC to 3700 BC, the period with the highest density of data, showing a declination maximum around 4700 BC and a minimum in inclination at 4300 BC, which are not recorded by the recent global CALS10K.1b and regional SCHA.DIF.8K models due to the use of lake sediment data. Dating resolution by using the proposed PSV curve oscillates from approximately ±30 yr to ±200 yr for the period 6000 to 1000 yr BC, reaching similar resolution as radiocarbon dating. Considering the good preservation, age-control and widespread occurrence of burnt archaeological materials across Southern Europe, they represent a new source of data for geomagnetic field modelling, as well as for archaeomagnetic dating.

  5. A competitive strategy for atrial and aortic tract segmentation based on deformable models.

    Science.gov (United States)

    Morais, Pedro; Vilaça, João L; Queirós, Sandro; Bourier, Felix; Deisenhofer, Isabel; Tavares, João Manuel R S; D'hooge, Jan

    2017-12-01

    Multiple strategies have previously been described for atrial region (i.e. atrial bodies and aortic tract) segmentation. Although these techniques have proven their accuracy, inadequate results in the mid atrial walls are common, restricting their application for specific cardiac interventions. In this work, we introduce a novel competitive strategy to perform atrial region segmentation with correct delineation of the thin mid walls, and integrated it into the B-spline Explicit Active Surfaces framework. A double-stage segmentation process is used, which starts with a fast contour growing followed by a refinement stage with local descriptors. Independent functions are used to define each region, being afterward combined to compete for the optimal boundary. The competition locally constrains the surface evolution, prevents overlaps and allows refinement to the walls. Three different scenarios were used to demonstrate the advantages of the proposed approach, through the evaluation of its segmentation accuracy, and its performance for heterogeneous mid walls. Both computed tomography and magnetic resonance imaging datasets were used, presenting results similar to the state-of-the-art methods for both atria and aorta. The competitive strategy showed its superior performance with statistically significant differences against the traditional free-evolution approach in cases with bad image quality or missed atrial/aortic walls. Moreover, only the competitive approach was able to accurately segment the atrial/aortic wall. Overall, the proposed strategy showed to be suitable for atrial region segmentation with a correct segmentation of the mid thin walls, demonstrating its added value with respect to the traditional techniques. Copyright © 2017 Elsevier B.V. All rights reserved.

  6. Web based foundry knowledge base

    Directory of Open Access Journals (Sweden)

    A. Stawowy

    2009-01-01

    Full Text Available The main assumptions and functions of proposed Foundry Knowledge Base (FKB are presented in this paper. FKB is a framework forinformation exchange of casting products and manufacturing methods. We use CMS (Content Management System to develope andmaintain our web-based system. The CastML – XML dialect developed by authors for description of casting products and processes – isused as a tool for information interchange between ours and outside systems, while SQL is used to store and edit knowledge rules and alsoto solve the basic selection problems in the rule-based module. Besides the standard functions (companies data, news, events, forums and media kit, our website contains a number of nonstandard functions; the intelligent search module based on expert system is the main advantage of our solution. FKB is to be a social portal which content will be developed by foundry community.

  7. Fragmentation based

    Directory of Open Access Journals (Sweden)

    Shashank Srivastava

    2014-01-01

    Gaining the understanding of mobile agent architecture and the security concerns, in this paper, we proposed a security protocol which addresses security with mitigated computational cost. The protocol is a combination of self decryption, co-operation and obfuscation technique. To circumvent the risk of malicious code execution in attacking environment, we have proposed fragmentation based encryption technique. Our encryption technique suits the general mobile agent size and provides hard and thorny obfuscation increasing attacker’s challenge on the same plane providing better performance with respect to computational cost as compared to existing AES encryption.

  8. BDDC Deluxe for Isogeometric Analysis

    KAUST Repository

    da Veiga, L. Beirão

    2016-01-01

    The main goal of this paper is to design, analyze, and test a BDDC (Balancing Domain Decomposition by Constraints, see [12, 23]) preconditioner for Isogeometric Analysis (IGA), based on a novel type of interface averaging, which we will denote by deluxe scaling, with either full or reduced set of primal constraints. IGA is an innovative numerical methodology, introduced in [17] and first analyzed in [1], where the geometry description of the PDE domain is adopted from a Computer Aided Design (CAD) parametrization usually based on Non-Uniform Rational B-Splines (NURBS) and the same NURBS basis functions are also used as the PDEs discrete basis, following an isoparametric paradigm; see the monograph [10]. Recent works on IGA preconditioners have focused on overlapping Schwarz preconditioners [3, 5, 7, 9], multigrid methods [16], and non-overlapping preconditioners [4, 8, 20].

  9. A NURBS approximation of experimental stress-strain curves

    International Nuclear Information System (INIS)

    Fedorov, Timofey V.; Morrev, Pavel G.

    2016-01-01

    A compact universal representation of monotonic experimental stress-strain curves of metals and alloys is proposed. It is based on the nonuniform rational Bezier splines (NURBS) of second order and may be used in a computer library of materials. Only six parameters per curve are needed; this is equivalent to a specification of only three points in a stress-strain plane. NURBS-functions of higher order prove to be surplus. Explicit expressions for both yield stress and hardening modulus are given. Two types of curves are considered: at a finite interval of strain and at infinite one. A broad class of metals and alloys of various chemical compositions subjected to various types of preliminary thermo-mechanical working is selected from a comprehensive data base in order to test the methodology proposed. The results demonstrate excellent correspondence to the experimental data. Keywords: work hardening, stress-strain curve, spline approximation, nonuniform rational B-spline, NURBS.

  10. Vibrational analysis of pyramidal XY3-type molecules based on high-level ab initio potential energy surfaces: application to NH3

    Science.gov (United States)

    Lin, H.; Thiel, W.; Yurchenko, S. N.; Carvajal, M.; Jensen, P.

    Variational calculations of the vibrational energies of the non-rigid and semirigid XY3 molecules, as ammonia and phosphine respectively, have been carried out [1,2]. In the procedure used is emphasized the umbrella motion due to the corresponding coordinate, for pyramidal non-rigid XY3 molecules, is the responsible of the torsional tunneling between different minima of the Potential Energy Surfaces. For the NH3 analytical potential energy surfaces were constructed from CCSD(T)/aug-cc-pVTZ ab initio data augmented by the results obtained by extrapolating CCSD(T)/aug-cc-pVXZ (X=T,Q,5) results to the complete basis set limit and adding corrections for core-valence correlation and relativistic effects. The vibrational energies were calculated by employing a kinetic energy operator expressed in terms of linearized internal coordinates. The exact internal coordinates were expressed as sixth-order Taylor expansions in the linearized coordinates. In the present work we show the latter improvement in the calculated vibrational energies with respect to the latter report [1]. This work is supported by the European Commission through contract no. HPRN-CT-2000-00022 ``Spectroscopy of Highly Excited Rovibrational States''.

  11. Detailed analysis of the density change on chest CT of COPD using non-rigid registration of inspiration/expiration CT scans

    International Nuclear Information System (INIS)

    Kim, Eun Young; Seo, Joon Beom; Lee, Hyun Joo; Kim, Namkug; Lee, Eunsol; Lee, Sang Min; Oh, Sang Young; Hwang, Hye Jeon; Oh, Yeon-Mok; Lee, Sang-Do

    2015-01-01

    One objective was to evaluate the air trapping index (ATI), measured by inspiration/expiration CT, in COPD patients and nonsmokers. Another objective was to assess the association between the pulmonary function test (PFT) and CT parameters such as ATI or other indices, separately in the whole lung, in emphysema, and in hyperinflated and normal lung areas. One hundred and thirty-eight COPD patients and 29 nonsmokers were included in our study. The ATI, the emphysema index (EI), the gas trapping index (Exp -856) and expiration/inspiration ratio of mean lung density (E/Iratio of MLD) were measured on CT. The values of the whole lung, of emphysema, and of hyperinflated and normal lung areas were compared and then correlated with various PFT parameters. Compared with nonsmokers, COPD patients showed a higher ATI in the whole lung and in each lung lesion (all P 25-75% , RV and RV/TLC, and was comparable to Exp -856 and the E/I ratio of MLD. The ATI of emphysema and hyperinflated areas on CT showed better correlation than the normal lung area with PFT parameters. Detailed analysis of density change at inspiration and expiration CT of COPD can provide new insights into pulmonary functional impairment in each lung area. (orig.)

  12. Detailed analysis of the density change on chest CT of COPD using non-rigid registration of inspiration/expiration CT scans.

    Science.gov (United States)

    Kim, Eun Young; Seo, Joon Beom; Lee, Hyun Joo; Kim, Namkug; Lee, Eunsol; Lee, Sang Min; Oh, Sang Young; Hwang, Hye Jeon; Oh, Yeon-Mok; Lee, Sang-Do

    2015-02-01

    One objective was to evaluate the air trapping index (ATI), measured by inspiration/expiration CT, in COPD patients and nonsmokers. Another objective was to assess the association between the pulmonary function test (PFT) and CT parameters such as ATI or other indices, separately in the whole lung, in emphysema, and in hyperinflated and normal lung areas. One hundred and thirty-eight COPD patients and 29 nonsmokers were included in our study. The ATI, the emphysema index (EI), the gas trapping index (Exp -856) and expiration/inspiration ratio of mean lung density (E/Iratio of MLD) were measured on CT. The values of the whole lung, of emphysema, and of hyperinflated and normal lung areas were compared and then correlated with various PFT parameters. Compared with nonsmokers, COPD patients showed a higher ATI in the whole lung and in each lung lesion (all P inspiration and expiration CT of COPD can provide new insights into pulmonary functional impairment in each lung area. • COPD patients show significant air trapping in the lung. • The air trapping index is a comparable parameter to other CT indices. • Air trapping of emphysema and hyperinflated lung areas relates to functional loss. • The emphysema area changes more, with less air trapping than other areas.

  13. Molecular dynamics simulation investigations of H2/D2 dissocitive chemisorption dynamics on Cun(n=13-14) Rigid/nonrigid clusters

    International Nuclear Information System (INIS)

    Elzein, N.

    2004-01-01

    In this work with a use of molecular dynamic simulations we have reported the results of a quasiclassical simulation study of the interaction of H2/(D2) with Cu N (N=13-14) atoms in both rigid /(non rigid) clusters.The geometry of the cluster is obtained by an embedded-atom (EA) mode potential, and the interaction between the molecule and cIuster is described by a LEPS -London-Eyring -Polanyi-Sato) potential energy function.Both channels the reactive dissociative adsorption of the molecule on the cIuster) and non reactive (scattering of the molecule from the cluster) are considered. The dissociative chemisorption probability, cross section and rate constant are studied as functions of the initial quantal rovibrational state of the molecule, collision energy, impact parameter and the temperature (OK,296K,834K ,1014K,1554K) of the clusters

  14. Compressive elastic moduli and polishing performance of non-rigid core/shell structured PS/SiO2 composite abrasives evaluated by AFM

    International Nuclear Information System (INIS)

    Chen, Ailian; Mu, Weibin; Chen, Yang

    2014-01-01

    The core/shell structured polystyrene (PS)/SiO 2 composite microspheres with different silica shell morphology were synthesized by a modified Stöber method. As confirmed by transmission electron microscopy (TEM), the rough discontinuous shell consisted of separate SiO 2 nanoparticles for composite-A, while the smooth continuous one was composed of amorphous silica network for composite-B. Atomic force microscopy (AFM) was employed to probe the compressive Young's moduli (E) and chemical mechanical polishing (CMP) performances of the as-prepared PS/SiO 2 composite microspheres. On the basis of the Hertzian contact mechanics, the calculated E values of the PS microspheres, composite-A and composite-B were 2.9 ± 0.4, 5.1 ± 1.2 and 6.0 ± 1.2 GPa, respectively. Compared to traditional abrasives, thermally grown silicon oxide wafers after polished by the core/shell PS/SiO 2 composite abrasives obtained a lower root mean square roughness and a higher material removal rate value. In addition, there is an obvious effect of shell morphology of the composites on oxide CMP performance and structural stability during polishing process. This approach would provide a basis for understanding the actual role of organic/inorganic core/shell composite abrasives in the material removal process of CMP.

  15. Detailed analysis of the density change on chest CT of COPD using non-rigid registration of inspiration/expiration CT scans

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Eun Young [Chonbuk National University Medical School and Hospital, Research Institute of Clinical Medicine, Department of Radiology, Jeollabuk-do (Korea, Republic of); University of Ulsan College of Medicine, Asan Medical Center, Department of Radiology and Research Institute of Radiology, Seoul (Korea, Republic of); Seo, Joon Beom; Lee, Hyun Joo; Kim, Namkug; Lee, Eunsol; Lee, Sang Min; Oh, Sang Young [University of Ulsan College of Medicine, Asan Medical Center, Department of Radiology and Research Institute of Radiology, Seoul (Korea, Republic of); Hwang, Hye Jeon [Hallym University Sacred Heart Hospital, Department of Radiology, Hallym University College of Medicine, Gyeonggi-do (Korea, Republic of); Oh, Yeon-Mok; Lee, Sang-Do [University of Ulsan College of Medicine, Asan Medical Center, Department of Pulmonary and Critical Care Medicine, and Clinical Research Center for Chronic Obstructive Airway Diseases, Seoul (Korea, Republic of)

    2014-09-14

    One objective was to evaluate the air trapping index (ATI), measured by inspiration/expiration CT, in COPD patients and nonsmokers. Another objective was to assess the association between the pulmonary function test (PFT) and CT parameters such as ATI or other indices, separately in the whole lung, in emphysema, and in hyperinflated and normal lung areas. One hundred and thirty-eight COPD patients and 29 nonsmokers were included in our study. The ATI, the emphysema index (EI), the gas trapping index (Exp -856) and expiration/inspiration ratio of mean lung density (E/Iratio of MLD) were measured on CT. The values of the whole lung, of emphysema, and of hyperinflated and normal lung areas were compared and then correlated with various PFT parameters. Compared with nonsmokers, COPD patients showed a higher ATI in the whole lung and in each lung lesion (all P < 0.05). The ATI showed a higher correlation than EI with FEF{sub 25-75%}, RV and RV/TLC, and was comparable to Exp -856 and the E/I ratio of MLD. The ATI of emphysema and hyperinflated areas on CT showed better correlation than the normal lung area with PFT parameters. Detailed analysis of density change at inspiration and expiration CT of COPD can provide new insights into pulmonary functional impairment in each lung area. (orig.)

  16. Segmentation of tongue muscles from super-resolution magnetic resonance images.

    Science.gov (United States)

    Ibragimov, Bulat; Prince, Jerry L; Murano, Emi Z; Woo, Jonghye; Stone, Maureen; Likar, Boštjan; Pernuš, Franjo; Vrtovec, Tomaž

    2015-02-01

    Imaging and quantification of tongue anatomy is helpful in surgical planning, post-operative rehabilitation of tongue cancer patients, and studying of how humans adapt and learn new strategies for breathing, swallowing and speaking to compensate for changes in function caused by disease, medical interventions or aging. In vivo acquisition of high-resolution three-dimensional (3D) magnetic resonance (MR) images with clearly visible tongue muscles is currently not feasible because of breathing and involuntary swallowing motions that occur over lengthy imaging times. However, recent advances in image reconstruction now allow the generation of super-resolution 3D MR images from sets of orthogonal images, acquired at a high in-plane resolution and combined using super-resolution techniques. This paper presents, to the best of our knowledge, the first attempt towards automatic tongue muscle segmentation from MR images. We devised a database of ten super-resolution 3D MR images, in which the genioglossus and inferior longitudinalis tongue muscles were manually segmented and annotated with landmarks. We demonstrate the feasibility of segmenting the muscles of interest automatically by applying the landmark-based game-theoretic framework (GTF), where a landmark detector based on Haar-like features and an optimal assignment-based shape representation were integrated. The obtained segmentation results were validated against an independent manual segmentation performed by a second observer, as well as against B-splines and demons atlasing approaches. The segmentation performance resulted in mean Dice coefficients of 85.3%, 81.8%, 78.8% and 75.8% for the second observer, GTF, B-splines atlasing and demons atlasing, respectively. The obtained level of segmentation accuracy indicates that computerized tongue muscle segmentation may be used in surgical planning and treatment outcome analysis of tongue cancer patients, and in studies of normal subjects and subjects with speech and

  17. Automatic and consistent registration framework for temporal pairs of mammograms in application to breast cancer risk assessment due to hormone replacement therapy (HRT)

    DEFF Research Database (Denmark)

    Karemore, Gopal Raghunath; Carreras, I. Arganda; Nielsen, Mads

    2009-01-01

    of patients undergoing HRT treatment using consistent and fully automatic registration framework. Methods: The combination of B-spline based registration and consistent image registration is proposed that simplify the search for optimal deformation and does not require speci¿cation of landmarks. Kullback...... that includes 39 placebo and 36 HRT treated volunteers for two years. The method’s performance was evaluated by an experienced radiologist.Validation study showed that method has given an optimal consistency error of 36 pixels(mm) with average computation time 45s. Conclusions:  The work describes a novel...... approach for consistent and robust registartion framework for interval change analysis in pairs of mammograms. This would lead radiologist to asses the risk of individual patient by examining the changes in tissue structure and density due to harmonal replacement therapy....

  18. Progress on a Vlasov Treatment of Coherent Synchrotron Radiation from Arbitrary Planar Orbits

    CERN Document Server

    Bassi, Gabriele; Warnock, Robert L

    2005-01-01

    We study the influence of coherent synchrotron radiation (CSR) on particle bunches traveling on arbitrary planar orbits between parallel conducting plates (shielding). The time evolution of the phase space distribution is determined by solving the Vlasov-Maxwell equations in the time domain. This provides lower numerical noise than the macroparticle method, and allows the study of emittance degradation and microbunching in bunch compressors. We calculate the fields excited by the bunch in the lab frame using a formula simpler than that based on retarded potentials.* We have developed an algorithm for solving the Vlasov equation in the beam frame using arc length as the independent variable and our method of local characteristics (discretized Perron-Frobenius operator).We integrate in the interaction picture in the hope that we can adopt a fixed grid. The distribution function will be represented by B-splines, in a scheme preserving positivity and normalization of the distribution. The transformation between l...

  19. Nonparametric functional mapping of quantitative trait loci.

    Science.gov (United States)

    Yang, Jie; Wu, Rongling; Casella, George

    2009-03-01

    Functional mapping is a useful tool for mapping quantitative trait loci (QTL) that control dynamic traits. It incorporates mathematical aspects of biological processes into the mixture model-based likelihood setting for QTL mapping, thus increasing the power of QTL detection and the precision of parameter estimation. However, in many situations there is no obvious functional form and, in such cases, this strategy will not be optimal. Here we propose to use nonparametric function estimation, typically implemented with B-splines, to estimate the underlying functional form of phenotypic trajectories, and then construct a nonparametric test to find evidence of existing QTL. Using the representation of a nonparametric regression as a mixed model, the final test statistic is a likelihood ratio test. We consider two types of genetic maps: dense maps and general maps, and the power of nonparametric functional mapping is investigated through simulation studies and demonstrated by examples.

  20. An Adaptive Speed Control Approach for DC Shunt Motors

    Directory of Open Access Journals (Sweden)

    Ruben Tapia-Olvera

    2016-11-01

    Full Text Available A B-spline neural networks-based adaptive control technique for angular speed reference trajectory tracking tasks with highly efficient performance for direct current shunt motors is proposed. A methodology for adaptive control and its proper training procedure are introduced. This algorithm sets the control signal without using a detailed mathematical model nor exact values of the parameters of the nonlinear dynamic system. The proposed robust adaptive tracking control scheme only requires measurements of the velocity output signal. Thus, real-time measurements or estimations of acceleration, current and disturbance signals are avoided. Experimental results confirm the efficient and robust performance of the proposed control approach for highly demanding motor operation conditions exposed to variable-speed reference trajectories and completely unknown load torque. Hence, laboratory experimental tests on a direct current shunt motor prove the viability of the proposed adaptive output feedback trajectory tracking control approach.

  1. Discrete-time CMAC NN control of feedback linearizable nonlinear systems under a persistence of excitation.

    Science.gov (United States)

    Jagannathan, S

    1999-01-01

    The local structure of CMAC neural networks (NN) result in better and faster controllers for nonlinear dynamical systems. A CMAC neural network-based discrete-time controller which linearizes the unknown multiinput and multioutput (MIMO) nonlinear system through feedback is presented. Control action is defined in order to achieve tracking performance for this unknown nonlinear system. An efficient and localized weight addressing scheme for the CMAC NN's is described using an appropriate choice of the B-spline receptive field functions that form a basis. A uniform ultimate boundedness of the closed-loop system is given in the sense of Lyapunov using the persistency of excitation (PE) condition. Simulation results are shown to demonstrate the theoretical conclusions.

  2. Electromagnetic two-dimensional analysis of trapped-ion eigenmodes

    Energy Technology Data Exchange (ETDEWEB)

    Kim, D.; Rewoldt, G.

    1984-11-01

    A two-dimensional electromagnetic analysis of the trapped-ion instability for the tokamak case with ..beta.. not equal to 0 has been made, based on previous work in the electrostatic limit. The quasineutrality condition and the component of Ampere's law along the equilibrium magnetic field are solved for the perturbed electrostatic potential and the component of the perturbed vector potential along the equilibrium magnetic field. The general integro-differential equations are converted into a matrix eigenvalue-eigenfunction problem by expanding in cubic B-spline finite elements in the minor radius and in Fourier harmonics in the poloidal angle. A model MHD equilibrium with circular, concentric magnetic surfaces and large aspect ratio is used which is consistent with our assemption that B << 1. The effect on the trapped-ion mode of including these electromagnetic extensions to the calculation is considered, and the temperature (and ..beta..) scaling of the mode frequency is shown and discussed.

  3. DISPL: a software package for one and two spatially dimensioned kinetics-diffusion problems. [FORTRAN for IBM computers

    Energy Technology Data Exchange (ETDEWEB)

    Leaf, G K; Minkoff, M; Byrne, G D; Sorensen, D; Bleakney, T; Saltzman, J

    1978-11-01

    DISPL is a software package for solving some second-order nonlinear systems of partial differential equations including parabolic, elliptic, hyperbolic, and some mixed types such as parabolic--elliptic equations. Fairly general nonlinear boundary conditions are allowed as well as interface conditions for problems in an inhomogeneous media. The spatial domain is one- or two-dimensional with Cartesian, cylindrical, or spherical (in one dimension only) geometry. The numerical method is based on the use of Galerkin's procedure combined with the use of B-splines in order to reduce the system of PDE's to a system of ODE's. The latter system is then solved with a sophisticated ODE software package. Software features include extensive dump/restart facilities, free format input, moderate printed output capability, dynamic storage allocation, and three graphics packages. 17 figures, 9 tables.

  4. Numerical Solutions for the Eighth-Order Initial and Boundary Value Problems Using the Second Kind Chebyshev Wavelets

    Directory of Open Access Journals (Sweden)

    Xiaoyong Xu

    2015-01-01

    Full Text Available A collocation method based on the second kind Chebyshev wavelets is proposed for the numerical solution of eighth-order two-point boundary value problems (BVPs and initial value problems (IVPs in ordinary differential equations. The second kind Chebyshev wavelets operational matrix of integration is derived and used to transform the problem to a system of algebraic equations. The uniform convergence analysis and error estimation for the proposed method are given. Accuracy and efficiency of the suggested method are established through comparing with the existing quintic B-spline collocation method, homotopy asymptotic method, and modified decomposition method. Numerical results obtained by the present method are in good agreement with the exact solutions available in the literatures.

  5. Fuzzy model predictive control algorithm applied in nuclear power plant

    International Nuclear Information System (INIS)

    Zuheir, Ahmad

    2006-01-01

    The aim of this paper is to design a predictive controller based on a fuzzy model. The Takagi-Sugeno fuzzy model with an Adaptive B-splines neuro-fuzzy implementation is used and incorporated as a predictor in a predictive controller. An optimization approach with a simplified gradient technique is used to calculate predictions of the future control actions. In this approach, adaptation of the fuzzy model using dynamic process information is carried out to build the predictive controller. The easy description of the fuzzy model and the easy computation of the gradient sector during the optimization procedure are the main advantages of the computation algorithm. The algorithm is applied to the control of a U-tube steam generation unit (UTSG) used for electricity generation. (author)

  6. A Stochastic Wavelet Finite Element Method for 1D and 2D Structures Analysis

    Directory of Open Access Journals (Sweden)

    Xingwu Zhang

    2014-01-01

    Full Text Available A stochastic finite element method based on B-spline wavelet on the interval (BSWI-SFEM is presented for static analysis of 1D and 2D structures in this paper. Instead of conventional polynomial interpolation, the scaling functions of BSWI are employed to construct the displacement field. By means of virtual work principle and BSWI, the wavelet finite elements of beam, plate, and plane rigid frame are obtained. Combining the Monte Carlo method and the constructed BSWI elements together, the BSWI-SFEM is formulated. The constructed BSWI-SFEM can deal with the problems of structural response uncertainty caused by the variability of the material properties, static load amplitudes, and so on. Taking the widely used Timoshenko beam, the Mindlin plate, and the plane rigid frame as examples, numerical results have demonstrated that the proposed method can give a higher accuracy and a better constringency than the conventional stochastic finite element methods.

  7. PetIGA: A framework for high-performance isogeometric analysis

    KAUST Repository

    Dalcin, L.

    2016-05-25

    We present PetIGA, a code framework to approximate the solution of partial differential equations using isogeometric analysis. PetIGA can be used to assemble matrices and vectors which come from a Galerkin weak form, discretized with Non-Uniform Rational B-spline basis functions. We base our framework on PETSc, a high-performance library for the scalable solution of partial differential equations, which simplifies the development of large-scale scientific codes, provides a rich environment for prototyping, and separates parallelism from algorithm choice. We describe the implementation of PetIGA, and exemplify its use by solving a model nonlinear problem. To illustrate the robustness and flexibility of PetIGA, we solve some challenging nonlinear partial differential equations that include problems in both solid and fluid mechanics. We show strong scaling results on up to 40964096 cores, which confirm the suitability of PetIGA for large scale simulations.

  8. On the aero-elastic design of the DTU 10MW wind turbine blade for the LIFES50+ wind tunnel scale model

    DEFF Research Database (Denmark)

    Bayati, I.; Belloli, M.; Bernini, L.

    2016-01-01

    This paper illustrates the aero-elastic optimal design, the realization and the verification of the wind tunnel scale model blades for the DTU 10 MW wind turbine model, within LIFES50+ project. The aerodynamic design was focused on the minimization of the difference, in terms of thrust coefficient...... and for different angles of attack. The aero-elastic design algorithm was set to define the optimal spanwise thickness over chord ratio (t/c), the chord length and the twist to match the first flapwise scaled natural frequency. An aluminium mould for the carbon fibre was CNC manufactured based on B-Splines CAD...... definition of the external geometry. Then the wind tunnel tests at Politecnico di Milano confirmed successful design and manufacturing approaches....

  9. Foundation: Transforming data bases into knowledge bases

    Science.gov (United States)

    Purves, R. B.; Carnes, James R.; Cutts, Dannie E.

    1987-01-01

    One approach to transforming information stored in relational data bases into knowledge based representations and back again is described. This system, called Foundation, allows knowledge bases to take advantage of vast amounts of pre-existing data. A benefit of this approach is inspection, and even population, of data bases through an intelligent knowledge-based front-end.

  10. A strategy for multimodal deformable image registration to integrate PET/MR into radiotherapy treatment planning

    International Nuclear Information System (INIS)

    Leibfarth, Sara; Moennich, David; Thorwarth, Daniela; Welz, Stefan; Siegel, Christine; Zips, Daniel; Schwenzer, Nina; Holger Schmidt, Holger

    2013-01-01

    Background: Combined positron emission tomography (PET)/magnetic resonance imaging (MRI) is highly promising for biologically individualized radiotherapy (RT). Hence, the purpose of this work was to develop an accurate and robust registration strategy to integrate combined PET/MR data into RT treatment planning. Material and methods: Eight patient datasets consisting of an FDG PET/computed tomography (CT) and a subsequently acquired PET/MR of the head and neck (HN) region were available. Registration strategies were developed based on CT and MR data only, whereas the PET components were fused with the resulting deformation field. Following a rigid registration, deformable registration was performed with a transform parametrized by B-splines. Three different optimization metrics were investigated: global mutual information (GMI), GMI combined with a bending energy penalty (BEP) for regularization (GMI + BEP) and localized mutual information with BEP (LMI + BEP). Different quantitative registration quality measures were developed, including volumetric overlap and mean distance measures for structures segmented on CT and MR as well as anatomical landmark distances. Moreover, the local registration quality in the tumor region was assessed by the normalized cross correlation (NCC) of the two PET datasets. Results: LMI + BEP yielded the most robust and accurate registration results. For GMI, GMI + BEP and LMI + BEP, mean landmark distances (standard deviations) were 23.9 mm (15.5 mm), 4.8 mm (4.0 mm) and 3.0 mm (1.0 mm), and mean NCC values (standard deviations) were 0.29 (0.29), 0.84 (0.14) and 0.88 (0.06), respectively. Conclusion: Accurate and robust multimodal deformable image registration of CT and MR in the HN region can be performed using a B-spline parametrized transform and LMI + BEP as optimization metric. With this strategy, biologically individualized RT based on combined PET/MRI in terms of dose painting is possible

  11. Quantitative assessment of magnetic resonance derived myocardial perfusion measurements using advanced techniques: microsphere validation in an explanted pig heart system.

    Science.gov (United States)

    Schuster, Andreas; Zarinabad, Niloufar; Ishida, Masaki; Sinclair, Matthew; van den Wijngaard, Jeroen Phm; Morton, Geraint; Hautvast, Gilion Ltf; Bigalke, Boris; van Horssen, Pepijn; Smith, Nicolas; Spaan, Jos Ae; Siebes, Maria; Chiribiri, Amedeo; Nagel, Eike

    2014-10-14

    Cardiovascular Magnetic Resonance (CMR) myocardial perfusion imaging has the potential to evolve into a method allowing full quantification of myocardial blood flow (MBF) in clinical routine. Multiple quantification pathways have been proposed. However at present it remains unclear which algorithm is the most accurate. An isolated perfused, magnetic resonance (MR) compatible pig heart model allows very accurate titration of MBF and in combination with high-resolution assessment of fluorescently-labeled microspheres represents a near optimal platform for validation. We sought to investigate which algorithm is most suited to quantify myocardial perfusion by CMR at 1.5 and 3 Tesla using state of the art CMR perfusion techniques and quantification algorithms. First-pass perfusion CMR was performed in an MR compatible blood perfused pig heart model. We acquired perfusion images at physiological flow ("rest"), reduced flow ("ischaemia") and during adenosine-induced hyperaemia ("hyperaemia") as well as during coronary occlusion. Perfusion CMR was performed at 1.5 Tesla (n = 4 animals) and at 3 Tesla (n = 4 animals). Fluorescently-labeled microspheres and externally controlled coronary blood flow served as reference standards for comparison of different quantification strategies, namely Fermi function deconvolution (Fermi), autoregressive moving average modelling (ARMA), exponential basis deconvolution (Exponential) and B-spline basis deconvolution (B-spline). All CMR derived MBF estimates significantly correlated with microsphere results. The best correlation was achieved with Fermi function deconvolution both at 1.5 Tesla (r = 0.93, p Tesla (r = 0.9, p Tesla (p Tesla and showed the weakest correlation to microspheres (r = 0.74, p Tesla exponential deconvolution performed worst (r = 0.49, p model. Amongst the different techniques, Fermi function deconvolution was the most accurate technique at both field strengths. Perfusion CMR based on Fermi

  12. VISCOELASTIC STRUCTURAL MODEL OF ASPHALT CONCRETE

    Directory of Open Access Journals (Sweden)

    V. Bogomolov

    2016-06-01

    Full Text Available The viscoelastic rheological model of asphalt concrete based on the generalized Kelvin model is offered. The mathematical model of asphalt concrete viscoelastic behavior that can be used for calculation of asphalt concrete upper layers of non-rigid pavements for strength and rutting has been developed. It has been proved that the structural model of Burgers does not fully meet all the requirements of the asphalt-concrete.

  13. TH-A-BRF-04: Intra-Fraction Motion Characterization for Early Stage Rectal Cancer Using Cine-MRI

    Energy Technology Data Exchange (ETDEWEB)

    Kleijnen, J; Asselen, B; Burbach, M; Intven, M; Reerink, O; Philippens, M; Lagendijk, J; Raaymakers, B [University Medical Center Utrecht, Utrecht (Netherlands)

    2014-06-15

    Purpose: To investigate the intra-fraction motion in patients with early stage rectal cancer using cine-MRI. Methods: Sixteen patient diagnosed with early stage rectal cancer underwent 1.5 T MR imaging prior to each treatment fraction of their short course radiotherapy (n=76). During each scan session, three 2D sagittal cine-MRIs were performed: at the beginning (Start), after 9:30 minutes (Mid), and after 18 minutes (End). Each cine-MRI has a duration of one minute at 2Hz temporal resolution, resulting in a total of 3:48 hours of cine-MRI. Additionally, standard T2-weighted (T2w) imaging was performed. Clinical target volume (CTV) an tumor (GTV) were delineated on the T2w scan and transferred to the first time-point of each cine-MRI scan. Within each cine-MRI, the first frame was registered to the remaining frames of the scan, using a non-rigid B-spline registration. To investigate potential drifts, a similar registration was performed between the first frame of the Start and End scans.To evaluate the motion, the distances by which the edge pixels of the delineations move in anterior-posterior (AP) and cranial-caudal (CC) direction, were determined using the deformation field of the registrations. The distance which incorporated 95% of these edge pixels (dist95%) was determined within each cine-MRI, and between Start- End scans, respectively. Results: Within a cine-MRI, we observed an average dist95% for the CTV of 1.3mm/1.5mm (SD=0.7mm/0.6mm) and for the GTV of 1.2mm/1.5mm (SD=0.8mm/0.9mm), in respectively AP/CC. For the CTV motion between the Start and End scan, an average dist95% of 5.5mm/5.3mm (SD=3.1mm/2.5mm) was found, in respectively AP/CC. For the GTV motion, an average dist95% of 3.6mm/3.9mm (SD=2.2mm/2.5mm) was found in AP/CC, respectively. Conclusion: Although intra-fraction motion within a one minute cine-MRI is limited, substantial intra-fraction motion was observed within the 18 minute time period between the Start and End cine-MRI.

  14. TH-A-BRF-04: Intra-Fraction Motion Characterization for Early Stage Rectal Cancer Using Cine-MRI

    International Nuclear Information System (INIS)

    Kleijnen, J; Asselen, B; Burbach, M; Intven, M; Reerink, O; Philippens, M; Lagendijk, J; Raaymakers, B

    2014-01-01

    Purpose: To investigate the intra-fraction motion in patients with early stage rectal cancer using cine-MRI. Methods: Sixteen patient diagnosed with early stage rectal cancer underwent 1.5 T MR imaging prior to each treatment fraction of their short course radiotherapy (n=76). During each scan session, three 2D sagittal cine-MRIs were performed: at the beginning (Start), after 9:30 minutes (Mid), and after 18 minutes (End). Each cine-MRI has a duration of one minute at 2Hz temporal resolution, resulting in a total of 3:48 hours of cine-MRI. Additionally, standard T2-weighted (T2w) imaging was performed. Clinical target volume (CTV) an tumor (GTV) were delineated on the T2w scan and transferred to the first time-point of each cine-MRI scan. Within each cine-MRI, the first frame was registered to the remaining frames of the scan, using a non-rigid B-spline registration. To investigate potential drifts, a similar registration was performed between the first frame of the Start and End scans.To evaluate the motion, the distances by which the edge pixels of the delineations move in anterior-posterior (AP) and cranial-caudal (CC) direction, were determined using the deformation field of the registrations. The distance which incorporated 95% of these edge pixels (dist95%) was determined within each cine-MRI, and between Start- End scans, respectively. Results: Within a cine-MRI, we observed an average dist95% for the CTV of 1.3mm/1.5mm (SD=0.7mm/0.6mm) and for the GTV of 1.2mm/1.5mm (SD=0.8mm/0.9mm), in respectively AP/CC. For the CTV motion between the Start and End scan, an average dist95% of 5.5mm/5.3mm (SD=3.1mm/2.5mm) was found, in respectively AP/CC. For the GTV motion, an average dist95% of 3.6mm/3.9mm (SD=2.2mm/2.5mm) was found in AP/CC, respectively. Conclusion: Although intra-fraction motion within a one minute cine-MRI is limited, substantial intra-fraction motion was observed within the 18 minute time period between the Start and End cine-MRI

  15. The velocity snake: Deformable contour for tracking in spatio-velocity space

    Energy Technology Data Exchange (ETDEWEB)

    Peterfreund, N.

    1997-06-01

    The author presents a new active contour model for boundary tracking and position prediction of nonrigid objects, which results from applying a velocity control to the class of elastodynamical contour models, known as snakes. The proposed control term minimizes an energy dissipation function which measures the difference between the contour velocity and the apparent velocity of the image. Treating the image video-sequence as continuous measurements along time, it is shown that the proposed control results in an unbiased tracking. This is in contrast to the original snake model which is proven to be biased due to the image (object) velocity, thus resulting in high sensitivity to image clutter. The motion estimation further allows for position prediction of nonrigid boundaries. Based on the proposed control approach, the author proposes a new class of real time tracking contours, varying from models with batch-mode control estimation to models with real time adaptive controllers.

  16. A Robust and Accurate Two-Step Auto-Labeling Conditional Iterative Closest Points (TACICP Algorithm for Three-Dimensional Multi-Modal Carotid Image Registration.

    Directory of Open Access Journals (Sweden)

    Hengkai Guo

    Full Text Available Atherosclerosis is among the leading causes of death and disability. Combining information from multi-modal vascular images is an effective and efficient way to diagnose and monitor atherosclerosis, in which image registration is a key technique. In this paper a feature-based registration algorithm, Two-step Auto-labeling Conditional Iterative Closed Points (TACICP algorithm, is proposed to align three-dimensional carotid image datasets from ultrasound (US and magnetic resonance (MR. Based on 2D segmented contours, a coarse-to-fine strategy is employed with two steps: rigid initialization step and non-rigid refinement step. Conditional Iterative Closest Points (CICP algorithm is given in rigid initialization step to obtain the robust rigid transformation and label configurations. Then the labels and CICP algorithm with non-rigid thin-plate-spline (TPS transformation model is introduced to solve non-rigid carotid deformation between different body positions. The results demonstrate that proposed TACICP algorithm has achieved an average registration error of less than 0.2mm with no failure case, which is superior to the state-of-the-art feature-based methods.

  17. Smooth GERBS, orthogonal systems and energy minimization

    Energy Technology Data Exchange (ETDEWEB)

    Dechevsky, Lubomir T., E-mail: ltd@hin.no, E-mail: pza@hin.no; Zanaty, Peter, E-mail: ltd@hin.no, E-mail: pza@hin.no [Faculty of Technology, Narvik University College, 2 Lodve Lange' s St., P.O.Box 385, Narvik N-8505 (Norway)

    2013-12-18

    New results are obtained in three mutually related directions of the rapidly developing theory of generalized expo-rational B-splines (GERBS) [7, 6]: closed-form computability of C{sup ∞}-smooth GERBS in terms of elementary and special functions, Hermite interpolation and least-squares best approximation via smooth GERBS, energy minimizing properties of smooth GERBS similar to those of the classical cubic polynomial B-splines.

  18. Polynomials to model the growth of young bulls in performance tests.

    Science.gov (United States)

    Scalez, D C B; Fragomeni, B O; Passafaro, T L; Pereira, I G; Toral, F L B

    2014-03-01

    The use of polynomial functions to describe the average growth trajectory and covariance functions of Nellore and MA (21/32 Charolais+11/32 Nellore) young bulls in performance tests was studied. The average growth trajectories and additive genetic and permanent environmental covariance functions were fit with Legendre (linear through quintic) and quadratic B-spline (with two to four intervals) polynomials. In general, the Legendre and quadratic B-spline models that included more covariance parameters provided a better fit with the data. When comparing models with the same number of parameters, the quadratic B-spline provided a better fit than the Legendre polynomials. The quadratic B-spline with four intervals provided the best fit for the Nellore and MA groups. The fitting of random regression models with different types of polynomials (Legendre polynomials or B-spline) affected neither the genetic parameters estimates nor the ranking of the Nellore young bulls. However, fitting different type of polynomials affected the genetic parameters estimates and the ranking of the MA young bulls. Parsimonious Legendre or quadratic B-spline models could be used for genetic evaluation of body weight of Nellore young bulls in performance tests, whereas these parsimonious models were less efficient for animals of the MA genetic group owing to limited data at the extreme ages.

  19. The physics data base

    International Nuclear Information System (INIS)

    Gault, F.D.

    1984-01-01

    The physics data base is introduced along with its associated data base management system. The emphasis is on data and their use and a classification of data and of data bases is developed to distinguish compilation organizations. The characteristics of these organizations are examined briefly and the long term consequences of the physics data base discussed. (orig.)

  20. Solid Base Catalysis

    CERN Document Server

    Ono, Yoshio

    2011-01-01

    The importance of solid base catalysts has come to be recognized for their environmentally benign qualities, and much significant progress has been made over the past two decades in catalytic materials and solid base-catalyzed reactions. The book is focused on the solid base. Because of the advantages over liquid bases, the use of solid base catalysts in organic synthesis is expanding. Solid bases are easier to dispose than liquid bases, separation and recovery of products, catalysts and solvents are less difficult, and they are non-corrosive. Furthermore, base-catalyzed reactions can be performed without using solvents and even in the gas phase, opening up more possibilities for discovering novel reaction systems. Using numerous examples, the present volume describes the remarkable role solid base catalysis can play, given the ever increasing worldwide importance of "green" chemistry. The reader will obtain an overall view of solid base catalysis and gain insight into the versatility of the reactions to whic...

  1. Deep Learning on Sparse Manifolds for Faster Object Segmentation.

    Science.gov (United States)

    Nascimento, Jacinto C; Carneiro, Gustavo

    2017-07-11

    We propose a new combination of deep belief networks and sparse manifold learning strategies for the 2D segmentation of non-rigid visual objects. With this novel combination, we aim to reduce the training and inference complexities while maintaining the accuracy of machine learning based non-rigid segmentation methodologies. Typical non-rigid object segmentation methodologies divide the problem into a rigid detection followed by a non-rigid segmentation, where the low dimensionality of the rigid detection allows for a robust training (i.e., a training that does not require a vast amount of annotated images to estimate robust appearance and shape models) and a fast search process during inference. Therefore, it is desirable that the dimensionality of this rigid transformation space is as small as possible in order to enhance the advantages brought by the aforementioned division of the problem. In this paper, we propose the use of sparse manifolds to reduce the dimensionality of the rigid detection space. Furthermore, we propose the use of deep belief networks to allow for a training process that can produce robust appearance models without the need of large annotated training sets. We test our approach in the segmentation of the left ventricle of the heart from ultrasound images and lips from frontal face images. Our experiments show that the use of sparse manifolds and deep belief networks for the rigid detection stage leads to segmentation results that are as accurate as the current state of the art, but with lower search complexity and training processes that require a small amount of annotated training data.

  2. Mobile Inquiry Based Learning

    NARCIS (Netherlands)

    Specht, Marcus

    2012-01-01

    Specht, M. (2012, 8 November). Mobile Inquiry Based Learning. Presentation given at the Workshop "Mobile inquiry-based learning" at the Mobile Learning Day 2012 at the Fernuniversität Hagen, Hagen, Germany.

  3. VectorBase

    Data.gov (United States)

    U.S. Department of Health & Human Services — VectorBase is a Bioinformatics Resource Center for invertebrate vectors. It is one of four Bioinformatics Resource Centers funded by NIAID to provide web-based...

  4. The ground based plan

    International Nuclear Information System (INIS)

    1989-01-01

    The paper presents a report of ''The Ground Based Plan'' of the United Kingdom Science and Engineering Research Council. The ground based plan is a plan for research in astronomy and planetary science by ground based techniques. The contents of the report contains a description of:- the scientific objectives and technical requirements (the basis for the Plan), the present organisation and funding for the ground based programme, the Plan, the main scientific features and the further objectives of the Plan. (U.K.)

  5. Stolen Base Physics

    Science.gov (United States)

    Kagan, David

    2013-01-01

    Few plays in baseball are as consistently close and exciting as the stolen base. While there are several studies of sprinting, the art of base stealing is much more nuanced. This article describes the motion of the base-stealing runner using a very basic kinematic model. The model will be compared to some data from a Major League game. The…

  6. Improving Intensity-Based Lung CT Registration Accuracy Utilizing Vascular Information

    Directory of Open Access Journals (Sweden)

    Kunlin Cao

    2012-01-01

    Full Text Available Accurate pulmonary image registration is a challenging problem when the lungs have a deformation with large distance. In this work, we present a nonrigid volumetric registration algorithm to track lung motion between a pair of intrasubject CT images acquired at different inflation levels and introduce a new vesselness similarity cost that improves intensity-only registration. Volumetric CT datasets from six human subjects were used in this study. The performance of four intensity-only registration algorithms was compared with and without adding the vesselness similarity cost function. Matching accuracy was evaluated using landmarks, vessel tree, and fissure planes. The Jacobian determinant of the transformation was used to reveal the deformation pattern of local parenchymal tissue. The average matching error for intensity-only registration methods was on the order of 1 mm at landmarks and 1.5 mm on fissure planes. After adding the vesselness preserving cost function, the landmark and fissure positioning errors decreased approximately by 25% and 30%, respectively. The vesselness cost function effectively helped improve the registration accuracy in regions near thoracic cage and near the diaphragm for all the intensity-only registration algorithms tested and also helped produce more consistent and more reliable patterns of regional tissue deformation.

  7. A new algorithm for small object tracking based on super-resolution technique

    Science.gov (United States)

    Habibi, Yabunayya; Sulistyaningrum, Dwi Ratna; Setiyono, Budi

    2017-08-01

    Object tracking in a video is a problem of estimating the trajectory of an object in the image plane as it moves around a scene. In general, object tracking is a quite complicated problem. Difficulties in object tracking occur due to some constraints or conditions such as object motion, changing appearance patterns, non-rigid object structures, occlusions, and camera motion. Level of problems would be higher if the object tracking has relatively small. If it happens, an object will be difficult to identify and tracking becomes less precision because small object has little information. In order to overcome these problem, the tracking will be integrated with super-resolution where a high-resolution image will be built from several low-resolution image. In this research, tracking of moving object using adaptive particle filter which adaptive motion model is applied to get better proposal distribution approach. The simulation shows that tracking integration with super-resolution significantly increase the accuracy of small object tracking.

  8. Value-based pricing

    OpenAIRE

    Netseva-Porcheva Tatyana

    2010-01-01

    The main aim of the paper is to present the value-based pricing. Therefore, the comparison between two approaches of pricing is made - cost-based pricing and value-based pricing. The 'Price sensitively meter' is presented. The other topic of the paper is the perceived value - meaning of the perceived value, the components of perceived value, the determination of perceived value and the increasing of perceived value. In addition, the best company strategies in matrix 'value-cost' are outlined. .

  9. Soy-based polyols

    Science.gov (United States)

    Suppes, Galen; Lozada, Zueica; Lubguban, Arnold

    2013-06-25

    The invention provides processes for preparing soy-based oligomeric polyols or substituted oligomeric polyols, as well as urethane bioelasteromers comprising the oligomeric polyols or substituted oligomeric polyols.

  10. XML-BASED REPRESENTATION

    Energy Technology Data Exchange (ETDEWEB)

    R. KELSEY

    2001-02-01

    For focused applications with limited user and use application communities, XML can be the right choice for representation. It is easy to use, maintain, and extend and enjoys wide support in commercial and research sectors. When the knowledge and information to be represented is object-based and use of that knowledge and information is a high priority, then XML-based representation should be considered. This paper discusses some of the issues involved in using XML-based representation and presents an example application that successfully uses an XML-based representation.

  11. Imagery Data Base Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The Imagery Data Base Facility supports AFRL and other government organizations by providing imagery interpretation and analysis to users for data selection, imagery...

  12. Synthetic Base Fluids

    Science.gov (United States)

    Brown, M.; Fotheringham, J. D.; Hoyes, T. J.; Mortier, R. M.; Orszulik, S. T.; Randles, S. J.; Stroud, P. M.

    The chemical nature and technology of the main synthetic lubricant base fluids is described, covering polyalphaolefins, alkylated aromatics, gas-to-liquid (GTL) base fluids, polybutenes, aliphatic diesters, polyolesters, polyalkylene glycols or PAGs and phosphate esters.Other synthetic lubricant base oils such as the silicones, borate esters, perfluoroethers and polyphenylene ethers are considered to have restricted applications due to either high cost or performance limitations and are not considered here.Each of the main synthetic base fluids is described for their chemical and physical properties, manufacture and production, their chemistry, key properties, applications and their implications when used in the environment.

  13. Strengths-based Learning

    DEFF Research Database (Denmark)

    Ledertoug, Mette Marie

    Strength-based learning - Children͛s Character Strengths as Means to their Learning Potential͛ is a Ph.D.-project aiming to create a strength-based mindset in school settings and at the same time introducing strength-based interventions as specific tools to improve both learning and well......-being. The Ph.D.-project in Strength-based learning took place in a Danish school with 750 pupils age 6-16 and a similar school was functioning as a control group. The presentation will focus on both the aware-explore-apply processes and the practical implications for the schools involved, and on measurable...

  14. Monitoring Knowledge Base (MKB)

    Data.gov (United States)

    U.S. Environmental Protection Agency — The Monitoring Knowledge Base (MKB) is a compilation of emissions measurement and monitoring techniques associated with air pollution control devices, industrial...

  15. Case-based reasoning

    CERN Document Server

    Kolodner, Janet

    1993-01-01

    Case-based reasoning is one of the fastest growing areas in the field of knowledge-based systems and this book, authored by a leader in the field, is the first comprehensive text on the subject. Case-based reasoning systems are systems that store information about situations in their memory. As new problems arise, similar situations are searched out to help solve these problems. Problems are understood and inferences are made by finding the closest cases in memory, comparing and contrasting the problem with those cases, making inferences based on those comparisons, and asking questions whe

  16. LOCALLY REFINED SPLINES REPRESENTATION FOR GEOSPATIAL BIG DATA

    Directory of Open Access Journals (Sweden)

    T. Dokken

    2015-08-01

    Full Text Available When viewed from distance, large parts of the topography of landmasses and the bathymetry of the sea and ocean floor can be regarded as a smooth background with local features. Consequently a digital elevation model combining a compact smooth representation of the background with locally added features has the potential of providing a compact and accurate representation for topography and bathymetry. The recent introduction of Locally Refined B-Splines (LR B-splines allows the granularity of spline representations to be locally adapted to the complexity of the smooth shape approximated. This allows few degrees of freedom to be used in areas with little variation, while adding extra degrees of freedom in areas in need of more modelling flexibility. In the EU fp7 Integrating Project IQmulus we exploit LR B-splines for approximating large point clouds representing bathymetry of the smooth sea and ocean floor. A drastic reduction is demonstrated in the bulk of the data representation compared to the size of input point clouds. The representation is very well suited for exploiting the power of GPUs for visualization as the spline format is transferred to the GPU and the triangulation needed for the visualization is generated on the GPU according to the viewing parameters. The LR B-splines are interoperable with other elevation model representations such as LIDAR data, raster representations and triangulated irregular networks as these can be used as input to the LR B-spline approximation algorithms. Output to these formats can be generated from the LR B-spline applications according to the resolution criteria required. The spline models are well suited for change detection as new sensor data can efficiently be compared to the compact LR B-spline representation.

  17. Secure base stations

    NARCIS (Netherlands)

    Bosch, Peter; Brusilovsky, Alec; McLellan, Rae; Mullender, Sape J.; Polakos, Paul

    2009-01-01

    With the introduction of the third generation (3G) Universal Mobile Telecommunications System (UMTS) base station router (BSR) and fourth generation (4G) base stations, such as the 3rd Generation Partnership Project (3GPP) Long Term Evolution (LTE) Evolved Node B (eNB), it has become important to

  18. Mutually unbiased bases

    Indian Academy of Sciences (India)

    Abstract. After a brief review of the notion of a full set of mutually unbiased bases in an N- dimensional Hilbert space, we summarize the work of Wootters and Fields (W K Wootters and. B C Fields, Ann. Phys. 191, 363 (1989)) which gives an explicit construction for such bases for the case N pr, where p is a prime. Further, we ...

  19. Game-Based Teaching

    DEFF Research Database (Denmark)

    Hanghøj, Thorkild

    2013-01-01

    This chapter outlines theoretical and empirical perspectives on how Game-Based Teaching can be integrated within the context of formal schooling. Initially, this is done by describing game scenarios as models for possible actions that need to be translated into curricular knowledge practices...... approaches to game-based teaching, which may or may not correspond with the pedagogical models of particular games....

  20. Home-based care

    African Journals Online (AJOL)

    Mrs. Patience Edoho Samson-Akpan

    PLWHA. The recommendation was that home based care should be encouraged and given priority by stake holders in the management of PLWHA. KEY WORDS: home-based care, quality of life, basic nursing care, psychosocial care. INTRODUCTION. HIV/AIDS is a chronic progressive disease which threatens the quality ...

  1. Diffusion Based Photon Mapping

    DEFF Research Database (Denmark)

    Schjøth, Lars; Olsen, Ole Fogh; Sporring, Jon

    2006-01-01

    . To address this problem we introduce a novel photon mapping algorithm based on nonlinear anisotropic diffusion. Our algorithm adapts according to the structure of the photon map such that smoothing occurs along edges and structures and not across. In this way we preserve the important illumination features......, while eliminating noise. We call our method diffusion based photon mapping....

  2. Skull base tumours

    Energy Technology Data Exchange (ETDEWEB)

    Borges, Alexandra [Instituto Portugues de Oncologia Francisco Gentil, Servico de Radiologia, Rua Professor Lima Basto, 1093 Lisboa Codex (Portugal)], E-mail: borgesalexandra@clix.pt

    2008-06-15

    With the advances of cross-sectional imaging radiologists gained an increasing responsibility in the management of patients with skull base pathology. As this anatomic area is hidden to clinical exam, surgeons and radiation oncologists have to rely on imaging studies to plan the most adequate treatment. To fulfil these endeavour radiologists need to be knowledgeable about skull base anatomy, about the main treatment options available, their indications and contra-indications and needs to be aware of the wide gamut of pathologies seen in this anatomic region. This article will provide a radiologists' friendly approach to the central skull base and will review the most common central skull base tumours and tumours intrinsic to the bony skull base.

  3. Context Based Wikipedia Linking

    Science.gov (United States)

    Granitzer, Michael; Seifert, Christin; Zechner, Mario

    Automatically linking Wikipedia pages can be done either content based by exploiting word similarities or structure based by exploiting characteristics of the link graph. Our approach focuses on a content based strategy by detecting Wikipedia titles as link candidates and selecting the most relevant ones as links. The relevance calculation is based on the context, i.e. the surrounding text of a link candidate. Our goal was to evaluate the influence of the link-context on selecting relevant links and determining a links best-entry-point. Results show, that a whole Wikipedia page provides the best context for resolving link and that straight forward inverse document frequency based scoring of anchor texts achieves around 4% less Mean Average Precision on the provided data set.

  4. Evidence-based radiography

    International Nuclear Information System (INIS)

    Hafslund, Bjorg; Clare, Judith; Graverholt, Birgitte; Wammen Nortvedt, Monica

    2008-01-01

    Evidence-based practice (EBP) offers the integration of the best research evidence with clinical knowledge and expertise and patient values. EBP is a well known term in health care. This paper discusses the implementation of EBP into radiography and introduces the term evidence-based radiography. Evidence-based radiography is radiography informed and based on the combination of clinical expertise and the best available research-based evidence, patient preferences and resources available. In Norway, EBP in radiography is being debated and radiographers are discussing the challenges of implementing EBP in both academic and clinical practice. This discussion paper explains why EBP needs to be a basis for a radiography curriculum and a part of radiographers' practice. We argue that Norwegian radiographers must increase participation in research and developing practice within their specific radiographic domain

  5. QuickBase

    CERN Document Server

    Conner, Nancy

    2007-01-01

    Ready to put Intuit's QuickBase to work? Our new Missing Manual shows you how to capture, modify, share, and manage data and documents with this web-based data-sharing program quickly and easily. No longer do you have to coordinate your team through a blizzard of emails or play frustrating games of "guess which document is the right one."QuickBase saves your organization time and money, letting you manage and share the information that makes your business tick: sales figures, project timelines, drafts of documents, purchase or work requests--whatever information you need to keep business flowi

  6. Equipment fragility data base

    International Nuclear Information System (INIS)

    Cover, L.E.

    1982-03-01

    Part of the effort of the Seismic Safety Margins Research Program (SSMRP) has been directed at generating a fragility data base for equipment used in control and safety systems in commercial nuclear power plants. Component fragility data exist in various forms, depending on their content, intended use, and level of reduction. Th data are stored in a relational data base on the LLNL CDC 7600 computers; this provides easy accessibility for LLNL computer users. This report describes the present structure of the data base and presents its contents through the use of tables

  7. Value-based pricing

    Directory of Open Access Journals (Sweden)

    Netseva-Porcheva Tatyana

    2010-01-01

    Full Text Available The main aim of the paper is to present the value-based pricing. Therefore, the comparison between two approaches of pricing is made - cost-based pricing and value-based pricing. The 'Price sensitively meter' is presented. The other topic of the paper is the perceived value - meaning of the perceived value, the components of perceived value, the determination of perceived value and the increasing of perceived value. In addition, the best company strategies in matrix 'value-cost' are outlined. .

  8. Design-Based Research

    DEFF Research Database (Denmark)

    Gynther, Karsten; Christensen, Ove; Petersen, Trine Brun

    2012-01-01

    I denne artikel introduceres Design Based Research for første gang på dansk i et videnskabeligt tidsskrift. Artiklen præsenterer de grundlæggende antagelser, som ligger til grund for Design Based Research-traditionen, og artiklen diskuterer de principper, som ligger til grund for gennemførelse af...... et DBR-forskningsprojekt. Med udgangspunkt i forsknings- og udviklingsprojektet ELYK: E-læring, Yderområder og Klyngedannelse, præsenteres den innovationsmodel, som projektet har udviklet med udgangspunkt i Design Based Research traditionen. ELYKs DBR innovationsmodel har vist sig effektiv i forhold...

  9. Nature-based integration

    DEFF Research Database (Denmark)

    Pitkänen, Kati; Oratuomi, Joose; Hellgren, Daniela

    Increased attention to, and careful planning of the integration of migrants into Nordic societies is ever more important. Nature based integration is a new solution to respond to this need. This report presents the results of a Nordic survey and workshop and illustrates current practices of nature...... based integration by case study descriptions from Denmark, Sweden Norway and Finland. Across Nordic countries several practical projects and initiatives have been launched to promote the benefits of nature in integration and there is also growing academic interest in the topic. Nordic countries have...... the potential of becoming real forerunners in nature based integration even at the global scale....

  10. Cheboygan Vessel Base

    Data.gov (United States)

    Federal Laboratory Consortium — Cheboygan Vessel Base (CVB), located in Cheboygan, Michigan, is a field station of the USGS Great Lakes Science Center (GLSC). CVB was established by congressional...

  11. Biomimetics: nature based innovation

    National Research Council Canada - National Science Library

    Bar-Cohen, Yoseph

    2012-01-01

    "Based on the concept that nature offers numerous sources of inspiration for inventions related to mechanisms, materials, processes, and algorithms, this book covers the topic of biomimetics and the inspired innovation...

  12. Kelomehele preemia Baseli festivalil

    Index Scriptorium Estoniae

    2000-01-01

    Baselis festivalil "VIPER - International Festival for Film Video and New Media" tunnistati parimaks CD-ROMiks Gustav Deutschi/Anna Schimeki "Odysee today", netiprojektiks itaallaste "01.ORG", äramärkimispreemia - Raivo Kelomehe "Videoweaver"

  13. Hanscom Air Force Base

    Data.gov (United States)

    Federal Laboratory Consortium — MIT Lincoln Laboratory occupies 75 acres (20 acres of which are MIT property) on the eastern perimeter of Hanscom Air Force Base, which is at the nexus of Lexington,...

  14. Network-Based Effectiveness

    National Research Council Canada - National Science Library

    Friman, Henrik

    2006-01-01

    ... (extended from Leavitt, 1965). This text identifies aspects of network-based effectiveness that can benefit from a better understanding of leadership and management development of people, procedures, technology, and organizations...

  15. Evidence based practice

    DEFF Research Database (Denmark)

    Hjørland, Birger

    2011-01-01

    Evidence-based practice (EBP) is an influential interdisciplinary movement that originated in medicine as evidence-based medicine (EBM) about 1992. EBP is of considerable interest to library and information science (LIS) because it focuses on a thorough documentation of the basis for the decision...... making that is established in research as well as an optimization of every link in documentation and search processes. EBP is based on the philosophical doctrine of empiricism and, therefore, it is subject to the criticism that has been raised against empiricism. The main criticism of EBP...... is that practitioners lose their autonomy, that the understanding of theory and of underlying mechanisms is weakened, and that the concept of evidence is too narrow in the empiricist tradition. In this article, it is suggested that we should speak of “research-based practice” rather than EBP, because this term is open...

  16. WormBase

    Data.gov (United States)

    U.S. Department of Health & Human Services — WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible...

  17. Loyalty Based Investment

    OpenAIRE

    Pei-Hsuan Lee; Ching-Wen Wang

    2010-01-01

    This study investigates the loyalty-based investment behavior in Taiwan. The link between team associations and loyalty has been examined to understand the characteristics of loyalty-based investors. The results revealed that both behavioral loyalty and attitudinal loyalty have significant positive effects on fans' investment intentions. Moreover, both attributes and benefits are significantly and positively related to either aspect of loyalty. In specific, behavioral loyalty has a higher inf...

  18. Game-based telerehabilitation.

    Science.gov (United States)

    Lange, B; Flynn, Sheryl M; Rizzo, A A

    2009-03-01

    This article summarizes the recent accomplishments and current challenges facing game-based virtual reality (VR) telerehabilitation. Specifically this article addresses accomplishments relative to realistic practice scenarios, part to whole practice, objective measurement of performance and progress, motivation, low cost, interaction devices and game design. Furthermore, a description of the current challenges facing game based telerehabilitation including the packaging, internet capabilities and access, data management, technical support, privacy protection, seizures, distance trials, scientific scrutiny and support from insurance companies.

  19. REST based mobile applications

    Science.gov (United States)

    Rambow, Mark; Preuss, Thomas; Berdux, Jörg; Conrad, Marc

    2008-02-01

    Simplicity is the major advantage of REST based webservices. Whereas SOAP is widespread in complex, security sensitive business-to-business aplications, REST is widely used for mashups and end-user centric applicatons. In that context we give an overview of REST and compare it to SOAP. Furthermore we apply the GeoDrawing application as an example for REST based mobile applications and emphasize on pros and cons for the use of REST in mobile application scenarios.

  20. Participatory design based research

    DEFF Research Database (Denmark)

    Dau, Susanne; Falk, Lars; Jensen, Louise Bach

    This poster reveal how participatory design based research by the use of a CoED inspired creative process can be used for designing solutions to problems regarding students study activities outside campus.......This poster reveal how participatory design based research by the use of a CoED inspired creative process can be used for designing solutions to problems regarding students study activities outside campus....

  1. Knowledge Based Strategy

    OpenAIRE

    Nicolescu, Ovidiu

    2006-01-01

    The paper is focused on the essential of knowledge-based strategy taking into consideration the theoretical and practical development during the last 10 years and especially knowledge revolution. It demonstrates the specificity of the company knowledgebased strategies and their necesity. More than this it presents essential elements regarding how to elaborate and to implement a knowledge based strategy starting from well know research in the field.

  2. Evidence-Based Development

    DEFF Research Database (Denmark)

    Hertzum, Morten; Simonsen, Jesper

    2004-01-01

    Systems development is replete with projects that represent substantial resource investments but result in systems that fail to meet users’ needs. Evidence-based development is an emerging idea intended to provide means for managing customer-vendor relationships and working systematically toward...... and electronic patient records for diabetes patients, this paper reports research in progress regarding the prospects and pitfalls of evidence-based development....

  3. [Endonasal skull base endoscopy].

    Science.gov (United States)

    Simal-Julián, Juan Antonio; Miranda-Lloret, Pablo; Pancucci, Giovanni; Evangelista-Zamora, Rocío; Pérez-Borredá, Pedro; Sanromán-Álvarez, Pablo; Perez-de-Sanromán, Laila; Botella-Asunción, Carlos

    2013-01-01

    The endoscopic endonasal techniques used in skull base surgery have evolved greatly in recent years. Our study objective was to perform a qualitative systematic review of the likewise systematic reviews in published English language literature, to examine the evidence and conclusions reached in these studies comparing transcranial and endoscopic approaches in skull base surgery. We searched the references on the MEDLINE and EMBASE electronic databases selecting the systematic reviews, meta-analyses and evidence based medicine reviews on skull based pathologies published from January 2000 until January 2013. We focused on endoscopic impact and on microsurgical and endoscopic technique comparisons. Full endoscopic endonasal approaches achieved gross total removal rates of craniopharyngiomas and chordomas higher than those for transcranial approaches. In anterior skull base meningiomas, complete resections were more frequently achieved after transcranial approaches, with a trend in favour of endoscopy with respect to visual prognosis. Endoscopic endonasal approaches minimised the postoperative complications after the treatment of cerebrospinal fluid (CSF) leaks, encephaloceles, meningoceles, craniopharyngiomas and chordomas, with the exception of postoperative CSF leaks. Randomized multicenter studies are necessary to resolve the controversy over endoscopic and microsurgical approaches in skull base surgery. Copyright © 2013 Sociedad Española de Neurocirugía. Published by Elsevier España. All rights reserved.

  4. LDEF materials data bases

    Science.gov (United States)

    Funk, Joan G.; Strickland, John W.; Davis, John M.

    1993-01-01

    The Long Duration Exposure Facility (LDEF) and the accompanying experiments were composed of and contained a wide variety of materials representing the largest collection of materials flown in low Earth orbit (LEO) and retrieved for ground based analysis to date. The results and implications of the mechanical, thermal, optical, and electrical data from these materials are the foundation on which future LEO space missions will be built. The LDEF Materials Special Investigation Group (MSIG) has been charged with establishing and developing data bases to document these materials and their performance to assure not only that the data are archived for future generations but also that the data are available to the spacecraft user community in an easily accessed, user-friendly form. This paper discusses the format and content of the three data bases developed or being developed to accomplish this task. The hardware and software requirements for each of these three data bases are discussed along with current availability of the data bases. This paper also serves as a user's guide to the MAPTIS LDEF Materials Data Base.

  5. Swarm-based medicine.

    Science.gov (United States)

    Putora, Paul Martin; Oldenburg, Jan

    2013-09-19

    Occasionally, medical decisions have to be taken in the absence of evidence-based guidelines. Other sources can be drawn upon to fill in the gaps, including experience and intuition. Authorities or experts, with their knowledge and experience, may provide further input--known as "eminence-based medicine". Due to the Internet and digital media, interactions among physicians now take place at a higher rate than ever before. With the rising number of interconnected individuals and their communication capabilities, the medical community is obtaining the properties of a swarm. The way individual physicians act depends on other physicians; medical societies act based on their members. Swarm behavior might facilitate the generation and distribution of knowledge as an unconscious process. As such, "swarm-based medicine" may add a further source of information to the classical approaches of evidence- and eminence-based medicine. How to integrate swarm-based medicine into practice is left to the individual physician, but even this decision will be influenced by the swarm.

  6. TU-F-BRF-02: MR-US Prostate Registration Using Patient-Specific Tissue Elasticity Property Prior for MR-Targeted, TRUS-Guided HDR Brachytherapy

    Energy Technology Data Exchange (ETDEWEB)

    Yang, X; Rossi, P; Ogunleye, T; Jani, A; Curran, W; Liu, T [Department of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, GA (United States)

    2014-06-15

    Purpose: High-dose-rate (HDR) brachytherapy has become a popular treatment modality for prostate cancer. Conventional transrectal ultrasound (TRUS)-guided prostate HDR brachytherapy could benefit significantly from MR-targeted, TRUS-guided procedure where the tumor locations, acquired from the multiparametric MRI, are incorporated into the treatment planning. In order to enable this integration, we have developed a MR-TRUS registration with a patient-specific biomechanical elasticity prior. Methods: The proposed method used a biomechanical elasticity prior to guide the prostate volumetric B-spline deformation in the MRI and TRUS registration. The patient-specific biomechanical elasticity prior was generated using ultrasound elastography, where two 3D TRUS prostate images were acquired under different probe-induced pressures during the HDR procedure, which takes 2-4 minutes. These two 3D TRUS images were used to calculate the local displacement (elasticity map) of two prostate volumes. The B-spline transformation was calculated by minimizing the Euclidean distance between the normalized attribute vectors of the prostate surface landmarks on the MR and TRUS. This technique was evaluated through two studies: a prostate-phantom study and a pilot study with 5 patients undergoing prostate HDR treatment. The accuracy of our approach was assessed through the locations of several landmarks in the post-registration and TRUS images; our registration results were compared with the surface-based method. Results: For the phantom study, the mean landmark displacement of the proposed method was 1.29±0.11 mm. For the 5 patients, the mean landmark displacement of the surface-based method was 3.25±0.51 mm; our method, 1.71±0.25 mm. Therefore, our proposed method of prostate registration outperformed the surfaced-based registration significantly. Conclusion: We have developed a novel MR-TRUS prostate registration approach based on patient-specific biomechanical elasticity prior

  7. Paper based electronics platform

    KAUST Repository

    Nassar, Joanna Mohammad

    2017-07-20

    A flexible and non-functionalized low cost paper-based electronic system platform fabricated from common paper, such as paper based sensors, and methods of producing paper based sensors, and methods of sensing using the paper based sensors are provided. A method of producing a paper based sensor can include the steps of: a) providing a conventional paper product to serve as a substrate for the sensor or as an active material for the sensor or both, the paper product not further treated or functionalized; and b) applying a sensing element to the paper substrate, the sensing element selected from the group consisting of a conductive material, the conductive material providing contacts and interconnects, sensitive material film that exhibits sensitivity to pH levels, a compressible and/or porous material disposed between a pair of opposed conductive elements, or a combination of two of more said sensing elements. The method of sensing can further include measuring, using the sensing element, a change in resistance, a change in voltage, a change in current, a change in capacitance, or a combination of any two or more thereof.

  8. Hierarchical path planning and control of a small fixed-wing UAV: Theory and experimental validation

    Science.gov (United States)

    Jung, Dongwon

    2007-12-01

    problem is formulated by setting up geometric linear constraints as well as boundary conditions. Subsequently, we construct B-spline path templates by solving a set of distinct optimization problems. For application in UAV motion planning, the path templates are incorporated to replace parts of the entire path by the smooth B-spline paths. Each path segment is stitched together while preserving continuity to obtain a final smooth reference path to be used for path following control. The path following control for a small fixed-wing UAV to track the prescribed smooth reference path is also addressed. Assuming the UAV is equipped with an autopilot for low level control, we adopt a kinematic error model with respect to the moving Serret-Frenet frame attached to a path for tracking controller design. A kinematic path following control law that commands heading rate is presented. Backstepping is applied to derive the roll angle command by taking into account the approximate closed-loop roll dynamics. A parameter adaptation technique is employed to account for the inaccurate time constant of the closed-loop roll dynamics during actual implementation. Finally, we implement the proposed hierarchical path control of a small UAV on the actual hardware platform, which is based on an 1/5 scale R/C model airframe (Decathlon) and the autopilot hardware and software. Based on the hardware-in-the-loop (HIL) simulation environment, the proposed hierarchical path control algorithm has been validated through on-line, real-time implementation on a small micro-controller. By a seamless integration of the control algorithms for path planning, path smoothing, and path following, it has been demonstrated that the UAV equipped with a small autopilot having limited computational resources manages to accomplish the path control objective to reach the goal while avoiding obstacles with minimal human intervention.

  9. Advanced algorithms for ionosphere modelling in GNSS applications within AUDITOR project

    Science.gov (United States)

    Goss, Andreas; Erdogan, Eren; Schmidt, Michael; Garcia-Rigo, Alberto; Hernandez-Pajares, Manuel; Lyu, Haixia; Nohutcu, Metin

    2017-04-01

    The H2020 project AUDITOR of the European Union started on January 1st 2016, with the participation of several European institutions and universities. The goal of the project is the implementation of a novel precise positioning technique, based on augmentation data in a customized GNSS receiver. Therefore more sophisticated ionospheric models have to be developed and implemented to increase the accuracy in real-time at the user side. Since the service should be available for the public, we use public data from GNSS networks (e.g. IGS, EUREF). The contributions of DGFI-TUM and UPC are focusing on the development of high accuracy GNSS algorithms to provide enhanced ionospheric corrections. This includes two major issues: 1. The existing mapping function to convert the slant total electron content (STEC) measurable by GNSS into the vertical total electron content (VTEC) is based on a so called single layer model (SLM), where all electrons are concentrated on an infinitesimal thin layer with fixed height (between 350 and 450 kilometers). This quantity is called the effective ionospheric height (EIH). An improvement of the mapping function shall be achieved by estimating more realistic numerical values for the EIH by means of a voxel-based tomographic model (TOMION). 2. The ionospheric observations are distributed rather unevenly over the globe and within specific regions. This inhomogeneous distribution is handled by data adaptive B-Spline approaches, with polynomial and trigonometric functions used for the latitude and longitude representations to provide high resolution VTEC maps for global and regional purposes. A Kalman filter is used as sequential estimator. The unknown parameters of the filter state vector are composed of the B-spline coefficients as well as the satellite and receiver DCBs. The resulting high accuracy ionosphere products will be disseminated to the users via downlink from a dedicated server to a receiver site. In this context, an appropriate

  10. Cantilever Based Mass Sensing

    DEFF Research Database (Denmark)

    Dohn, Søren

    2007-01-01

    suitable for a portable device and to investigate the possibility of enhancing the functionality and sensitivity of cantilever based mass sensors. A readout method based on the hard contact between the cantilever and a biased electrode placed in close proximity to the cantilever is proposed. The viability...... the mass and position of a particle attached to a cantilever to the resonant frequency. It is shown theoretical possible to find the mass and position of a particle by measurements of the resonant frequency of several bending modes. In the measurements the sensitivity of the cantilever based mass sensor...... is improved when operated at higher bending modes. By measuring the resonant frequency of several bending modes both the mass and position of an attached gold bead are determined....

  11. Problem Based Learning

    DEFF Research Database (Denmark)

    de Graaff, Erik; Guerra, Aida

    Problem-Based Learning (PBL) is an innovative method to organize the learning process in such a way that the students actively engage in finding answers by themselves. During the past 40 years PBL has evolved and diversified resulting in a multitude in variations in models and practices. However......, the key principles remain the same everywhere. Graaff & Kolmos (2003) identify the main PBL principles as follows: 1. Problem orientation 2. Project organization through teams or group work 3. Participant-directed 4. Experiental learning 5. Activity-based learning 6. Interdisciplinary learning and 7...... in Engineering Education. In answer to the requests for visits the Aalborg Centre for Problem Based Learning in Engineering Science and Sustainability under the auspices of UNESCO (UCPBL) a two days programme for visitors is offered two times a year. The workshop is an introduction workshop to the Aalborg PBL...

  12. Location-based Scheduling

    DEFF Research Database (Denmark)

    Andersson, Niclas; Christensen, Knud

    the predominant scheduling method since it was introduced in the late 1950s. Over the years, CPM has proven to be a very powerful technique for planning, scheduling and controlling projects, which among other things is indicated by the development of a large number of CPM-based software applications available...... on the market. However, CPM is primarily an activity based method that takes the activity as the unit of focus and there is criticism raised, specifically in the case of construction projects, on the method for deficient management of construction work and continuous flow of resources. To seek solutions...... to the identified limitations of the CPM method, an alternative planning and scheduling methodology that includes locations is tested. Location-based Scheduling (LBS) implies a shift in focus, from primarily the activities to the flow of work through the various locations of the project, i.e. the building. LBS uses...

  13. Skull Base Anatomy.

    Science.gov (United States)

    Patel, Chirag R; Fernandez-Miranda, Juan C; Wang, Wei-Hsin; Wang, Eric W

    2016-02-01

    The anatomy of the skull base is complex with multiple neurovascular structures in a small space. Understanding all of the intricate relationships begins with understanding the anatomy of the sphenoid bone. The cavernous sinus contains the carotid artery and some of its branches; cranial nerves III, IV, VI, and V1; and transmits venous blood from multiple sources. The anterior skull base extends to the frontal sinus and is important to understand for sinus surgery and sinonasal malignancies. The clivus protects the brainstem and posterior cranial fossa. A thorough appreciation of the anatomy of these various areas allows for endoscopic endonasal approaches to the skull base. Copyright © 2016 Elsevier Inc. All rights reserved.

  14. Mutually unbiased unitary bases

    Science.gov (United States)

    Shaari, Jesni Shamsul; Nasir, Rinie N. M.; Mancini, Stefano

    2016-11-01

    We consider the notion of unitary transformations forming bases for subspaces of M (d ,C ) such that the square of the Hilbert-Schmidt inner product of matrices from the differing bases is a constant. Moving from the qubit case, we construct the maximal number of such bases for the four- and two-dimensional subspaces while proving the nonexistence of such a construction for the three-dimensional case. Extending this to higher dimensions, we commit to such a construct for the case of qutrits and provide evidence for the existence of such unitaries for prime dimensional quantum systems. Focusing on the qubit case, we show that the average fidelity for estimating any such transformation is equal to the case for estimating a completely unknown unitary from SU(2 ) . This is then followed by a quick application for such unitaries in a quantum cryptographic setup.

  15. On multivariate Wilson bases

    DEFF Research Database (Denmark)

    Bownik, Marcin; Jakobsen, Mads Sielemann; Lemvig, Jakob

    2017-01-01

    A Wilson system is a collection of finite linear combinations of time frequency shifts of a square integrable function. In this paper we give an account of the construction of bimodular Wilson bases in higher dimensions from Gabor frames of redundancy two.......A Wilson system is a collection of finite linear combinations of time frequency shifts of a square integrable function. In this paper we give an account of the construction of bimodular Wilson bases in higher dimensions from Gabor frames of redundancy two....

  16. Inkjet-based micromanufacturing

    CERN Document Server

    Korvink, Jan G; Shin, Dong-Youn; Brand, Oliver; Fedder, Gary K; Hierold, Christofer; Tabata, Osamu

    2012-01-01

    Inkjet-based Micromanufacturing Inkjet technology goes way beyond putting ink on paper: it enables simpler, faster and more reliable manufacturing processes in the fields of micro- and nanotechnology. Modern inkjet heads are per se precision instruments that deposit droplets of fluids on a variety of surfaces in programmable, repeating patterns, allowing, after suitable modifications and adaptations, the manufacturing of devices such as thin-film transistors, polymer-based displays and photovoltaic elements. Moreover, inkjet technology facilitates the large-scale production of flexible RFID tr

  17. Scenario-based strategizing

    DEFF Research Database (Denmark)

    Lehr, Thomas; Lorenz, Ullrich; Willert, Markus

    2017-01-01

    on behavioural strategy as a theoretical lens, we design a yardstick to study the impact of scenario-based strategizing. We then describe our approach, which includes developing scenarios and alternative strategies separately and supporting the strategy selection through an integrated assessment of the goal......-based efficacy and robustness. To facilitate the colla- borative strategizing in teams, we propose a matrix with robustness and efficacy as the two axes, which we call the Parmenides Matrix. We assess the impact of the novel approach by applying it in two cases, at a govern- mental agency (German Environmental...... Ministry) and a firm affected by disruptive change (Bosch, leading global supplier of technology and solutions)....

  18. Iron-based superconductivity

    CERN Document Server

    Johnson, Peter D; Yin, Wei-Guo

    2015-01-01

    This volume presents an in-depth review of experimental and theoretical studies on the newly discovered Fe-based superconductors.  Following the Introduction, which places iron-based superconductors in the context of other unconventional superconductors, the book is divided into three sections covering sample growth, experimental characterization, and theoretical understanding.  To understand the complex structure-property relationships of these materials, results from a wide range of experimental techniques and theoretical approaches are described that probe the electronic and magnetic proper

  19. Identity-based encryption

    CERN Document Server

    Chatterjee, Sanjit

    2011-01-01

    Identity Based Encryption (IBE) is a type of public key encryption and has been intensely researched in the past decade. Identity-Based Encryption summarizes the available research for IBE and the main ideas that would enable users to pursue further work in this area. This book will also cover a brief background on Elliptic Curves and Pairings, security against chosen Cipher text Attacks, standards and more. Advanced-level students in computer science and mathematics who specialize in cryptology, and the general community of researchers in the area of cryptology and data security will find Ide

  20. Video-based rendering

    CERN Document Server

    Magnor, Marcus A

    2005-01-01

    Driven by consumer-market applications that enjoy steadily increasing economic importance, graphics hardware and rendering algorithms are a central focus of computer graphics research. Video-based rendering is an approach that aims to overcome the current bottleneck in the time-consuming modeling process and has applications in areas such as computer games, special effects, and interactive TV. This book offers an in-depth introduction to video-based rendering, a rapidly developing new interdisciplinary topic employing techniques from computer graphics, computer vision, and telecommunication en