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Sample records for bacterias marinas cultivables

  1. Proteasas extracelulares producidas por bacterias marinas aisladas de aguas contaminadas con efluentes pesqueros

    Directory of Open Access Journals (Sweden)

    Tito Sánchez

    2013-06-01

    Full Text Available Un total de 26 cepas de bacterias marinas con actividad proteolítica fueron aisladas de agua de mar contaminadas con efluentes pesqueros; las mismas que se evaluaron en base al crecimiento y formación de halos de actividad en Agar Marino suplementados con caseína al 1%, pH 8,0 e incubados a 25 ºC por 72 h. Cinco cepas, seleccionadas por presentar los mejores halos de actividad fueron evaluadas a su vez por su crecimiento y producción de proteasas a diferentes concentraciones de NaCl, rangos de temperatura y pH; siendo consideradas finalmente como bacterias halotolerantes, psicrotróficas y alcalófilas moderadas. Estas cepas también fueron evaluadas por su actividad proteolítica específica sobre la caseína, siendo la cepa CM48 (Pseudomonas sp. la que presentó la mejor actividad específica (17,38 U/mg a las 72 horas, y seguidas por las cepas CM45 (Alcaligenes sp. (12,09 U/mg y tres cepas de Aeromonas sp. (CM43, CM44 y CM46 con valores de 12,02; 10,07 y 10,10 U/mg respectivamente.

  2. Bacterias marinas productoras de compuestos antibacterianos aisladas a partir de invertebrados intermareales Marine bacteria producing antibacterial compounds Isolated from inter-tidal invertebrates

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    Jorge León

    2010-06-01

    Full Text Available Se realizó actividades prospectivas de muestreo de invertebrados intermareales en la Bahía de Ancón (Lima - Perú con el objetivo de seleccionar bacterias marinas productoras de sustancias antimicrobianas. El estudio comprendió el aislamiento de bacterias en agar marino, pruebas de susceptibilidad antimicrobiana in vitro y observaciones de microscopía electrónica. Se reporta el aislamiento, caracterización fenotípica y propiedades antimicrobianas de diez cepas de bacterias marinas que incluyen a los géneros Vibrio, Pseudomonas y Flavobacterium y del orden Actinomycetal que inhiben a patógenos de humanos. Los resultados indicarían que los invertebrados marinos serían fuentes de bacterias productoras de sustancias antibióticas.Prospective sampling activities of intertidal invertebrates in the Ancon Bay (Lima, Peru were done in order to select marine bacteria producing antimicrobial substances. The study included the isolation of bacteria in marine agar, in vitro antimicrobial susceptibility testing and electronic microscopic observations. We report the isolation, phenotypical characterization and antimicrobial properties of 10 strains of marine bacteria including the genus Vibrio, Pseudomonas, and Flavobacterium, and the order Actinomycetae that inhibit human pathogens. The results indicate that the marine invertebrates would be sources of bacteria producing antibiotic substances.

  3. Continuous Cultivation of Photosynthetic Bacteria for Fatty Acids Production

    DEFF Research Database (Denmark)

    Kim, Dong-Hoon; Lee, Ji-Hye; Hwang, Yuhoon

    2013-01-01

    In the present work, we introduced a novel approach for microbial fatty acids (FA) production. Photosynthetic bacteria, Rhodobacter sphaeroides KD131, were cultivated in a continuous-flow, stirred-tank reactor (CFSTR) at various substrate (lactate) concentrations.At hydraulic retention time (HRT) 4....... sphaeroides was around 35% of dry cell weight, mainly composed of vaccenic acid (C18:1, omega-7)....

  4. Continuous Cultivation of Photosynthetic Bacteria for Fatty Acids Production

    OpenAIRE

    Kim, Dong-Hoon; Lee, Ji-Hye; Hwang, Yuhoon; Kang, Seoktae; Kim, Mi-Sun

    2013-01-01

    In the present work, we introduced a novel approach for microbial fatty acids (FA) production. Photosynthetic bacteria, Rhodobacter sphaeroides KD131, were cultivated in a continuous-flow, stirred-tank reactor (CFSTR) at various substrate (lactate) concentrations.At hydraulic retention time (HRT) 4 d, cell concentration continuously increased from 0.97 g dcw/L to 2.05 g dcw/L as lactate concentration increased from 30 mM to 60 mM. At 70 mM, however, cell concentration fluctuated with incomple...

  5. Presencia de bacterias asociadas a nieve marina en arrecifes influenciados por escorrentía continental del Caribe colombiano: primer acercamiento

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    Hernán Alejandro Henao-Castro

    2015-06-01

    Full Text Available Parte del deterioro de los arrecifes de coral se atribuye al efecto del aporte de agua dulce cargada de nutrientes y sedimentos finos. Estas condiciones favorecen la formación de nieve marina lodosa que transporta gran carga de bacterias que pueden ser patógenos de corales. Por lo anterior, se estudió la presencia de bacterias asociadas a nieve marina lodosa en una zona arrecifal del Caribe colombiano en un gradiente de distancia a la desembocadura del canal del Dique (Cartagena. Por medio de técnicas moleculares PCR-DGGE, se registró baja riqueza, con bandas representativas de siete bacterias diferentes. El número de especies varió según el sitio, pero no hubo relación con la cercanía a la fuente de escorrentía. Como estudio pionero, sirve como punto de partida para estudios en arrecifes del Caribe colombiano impactados por escorrentía.

  6. Continuous cultivation of photosynthetic bacteria for fatty acids production.

    Science.gov (United States)

    Kim, Dong-Hoon; Lee, Ji-Hye; Hwang, Yuhoon; Kang, Seoktae; Kim, Mi-Sun

    2013-11-01

    In the present work, we introduced a novel approach for microbial fatty acids (FA) production. Photosynthetic bacteria, Rhodobacter sphaeroides KD131, were cultivated in a continuous-flow, stirred-tank reactor (CFSTR) at various substrate (lactate) concentrations. At hydraulic retention time (HRT) 4d, cell concentration continuously increased from 0.97 g dcw/L to 2.05 g dcw/L as lactate concentration increased from 30 mM to 60mM. At 70 mM, however, cell concentration fluctuated with incomplete substrate degradation. By installing a membrane unit to CFSTR, a stable performance was observed under much higher substrate loading (lactate 100mM and HRT 1.5d). A maximum cell concentration of 16.2g dcw/L, cell productivity of 1.9 g dcw/L/d, and FA productivity of 665 mg FA/L/d were attained, and these values were comparable with those achieved using microalgae. The FA content of R. sphaeroides was around 35% of dry cell weight, mainly composed of vaccenic acid (C18:1, omega-7).

  7. Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria

    DEFF Research Database (Denmark)

    Rettedal, Elizabeth; Gumpert, Heidi; Sommer, Morten

    2014-01-01

    show that carefully designed conditions enable cultivation of a representative proportion of human gut bacteria, enabling rapid multiplex phenotypic profiling. We use this approach to determine the phylogenetic distribution of antibiotic tolerance phenotypes for 16 antibiotics in the human gut...... microbiota. Based on the phenotypic mapping, we tailor antibiotic combinations to specifically select for previously uncultivated bacteria. Utilizing this method we cultivate and sequence the genomes of four isolates, one of which apparently belongs to the genus Oscillibacter; uncultivated Oscillibacter...

  8. Diversity of cultivated endophytic bacteria from sugarcane: genetic and biochemical characterization of Burkholderia cepacia complex isolates

    NARCIS (Netherlands)

    Mendes, R.; Pizzirani-Kleiner, A.A.; Araujo, W.L.; Raaijmakers, J.M.

    2007-01-01

    Bacteria were isolated from the rhizosphere and from inside the roots and stems of sugarcane plants grown in the field in Brazil. Endophytic bacteria were found in both the roots and the stems of sugarcane plants, with a significantly higher density in the roots. Many of the cultivated endophytic ba

  9. Miniaturización y simplificación de pruebas bioquímicas para la identificación de bacterias marinas asociadas al camarón

    OpenAIRE

    Solis Paredes, A.

    1996-01-01

    Miniaturización y simplificación de pruebas bioquímicas para la identificación de bacterias marinas asociadas al camarón A partir de una revisión sobre las bacterias que se han descrito asociadas al camarón se seleccionó un grupo de criterios bioquímicos que permiten su identificación de forma específica.

  10. Cultivation of anaerobic and facultatively anaerobic bacteria from spacecraft-associated clean rooms.

    Science.gov (United States)

    Stieglmeier, Michaela; Wirth, Reinhard; Kminek, Gerhard; Moissl-Eichinger, Christine

    2009-06-01

    In the course of this biodiversity study, the cultivable microbial community of European spacecraft-associated clean rooms and the Herschel Space Observatory located therein were analyzed during routine assembly operations. Here, we focused on microorganisms capable of growing without oxygen. Anaerobes play a significant role in planetary protection considerations since extraterrestrial environments like Mars probably do not provide enough oxygen for fully aerobic microbial growth. A broad assortment of anaerobic media was used in our cultivation strategies, which focused on microorganisms with special metabolic skills. The majority of the isolated strains grew on anaerobic, complex, nutrient-rich media. Autotrophic microorganisms or microbes capable of fixing nitrogen were also cultivated. A broad range of facultatively anaerobic bacteria was detected during this study and also, for the first time, some strictly anaerobic bacteria (Clostridium and Propionibacterium) were isolated from spacecraft-associated clean rooms. The multiassay cultivation approach was the basis for the detection of several bacteria that had not been cultivated from these special environments before and also led to the discovery of two novel microbial species of Pseudomonas and Paenibacillus.

  11. Multiple approaches to enhance the cultivability of bacteria associated with the marine sponge Haliclona (gellius) sp

    NARCIS (Netherlands)

    Sipkema, D.; Schippers, K.J.; Maalcke, W.J.; Yang, Y.; Salim, S.; Blanch, H.W.

    2011-01-01

    Three methods were examined to cultivate bacteria associated with the marine sponge Haliclona (gellius) sp.: agar plate cultures, liquid cultures, and floating filter cultures. A variety of oligotrophic media were employed, including media with aqueous and organic sponge extracts, bacterial signal m

  12. Cultivable endophytic bacteria from heavy metal(loid)-tolerant plants.

    Science.gov (United States)

    Román-Ponce, Brenda; Ramos-Garza, Juan; Vásquez-Murrieta, María Soledad; Rivera-Orduña, Flor Nohemí; Chen, Wen Feng; Yan, Jun; Estrada-de Los Santos, Paulina; Wang, En Tao

    2016-12-01

    To evaluate the interactions among endophytes, plants and heavy metal/arsenic contamination, root endophytic bacteria of Prosopis laevigata (Humb and Bonpl. ex Willd) and Sphaeralcea angustifolia grown in a heavy metal(loid)-contaminated zone in San Luis Potosi, Mexico, were isolated and characterized. Greater abundance and species richness were found in Prosopis than in Sphaeralcea and in the nutrient Pb-Zn-rich hill than in the poor nutrient and As-Cu-rich mine tailing. The 25 species identified among the 60 isolates formed three groups in the correspondence analysis, relating to Prosopis/hill (11 species), Prosopis/mine tailing (4 species) and Sphaeralcea/hill (4 species), with six species ungrouped. Most of the isolates showed high or extremely high resistance to arsenic, such as ≥100 mM for As(V) and ≥20 mM for As(III), in mineral medium. These results demonstrated that the abundance and community composition of root endophytic bacteria were strongly affected by the concentration and type of the heavy metals and metalloids (arsenic), as well as the plant species.

  13. Cultivation Techniques of Bacteria-Melon-Rice Cultivation Pattern%菌-瓜-稻耕作模式示范栽培技术

    Institute of Scientific and Technical Information of China (English)

    颜舜杨

    2014-01-01

    In recent year, Bacteria-Melon-Rice Cultivation Pattern was promoted in Jianyang county, which achieved good economic benefits. In this paper, we introduced planting performance and high-yielding cultivation techniques of Bacteria-Melon-Rice cultivation pattern.%近年建阳市进行菌—瓜—稻模式试验示范,取得很好的经济效益。介绍了菌—瓜—稻模式示范的栽培技术。

  14. Cultivation-dependent and cultivation-independent characterisation of hydrocarbon-degrading bacteria in Guaymas Basin sediments

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    Tony eGutierrez

    2015-07-01

    Full Text Available Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP, a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [13C]phenanthrene. The dominant sequences in clone libraries constructed from 13C-enriched bacterial DNA (from phenanthrene enrichments were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled phenanthrene and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity, and used this strain to provide direct evidence of phenanthrene degradation and mineralization. In addition, we isolated Halomonas, Thalassospira and Lutibacterium spp. with demonstrable phenanthrene-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea.

  15. Bacteria associated with compost used for cultivation of Indian edible mushroom Lentinus tuber-regium (Fr.

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    J. Manjunathan,

    2011-01-01

    Full Text Available The bacteria involved in an outdoor single phase composting using sawdust and wheat bran as substrates for cultivation of Lentinus tuber-regium (Fr. Composting was carried out for 15 days. The highestcore and peripheral temperatures were 66 and 45ºC, respectively, while the lowest temperature was 36ºC. The highest number of bacteria in the core and peripheral compost were 5.81x106 and 6.51x106 cfu/ml,respectively. Bacteria isolated and characterized from the fermenting agricultural substrates include Escherichia coli, Pseudomonas aeruginosa, Bacillus polymyxa, Enterobacter aerogenes, Micrococcus roseus, Micrococcus luteus, Citrobacter freundii, Bacillus subtilis, Clostridium perfringens, Bacillus licheniformis, and Bacillus cereus,Proteus mirabilis. The implication of the presence of these bacteria is discussed.

  16. Phylogenetic analysis of cultivable bacteria isolated from Arctic sea-ice

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Phylogenetic analysis based on 16S rDNA of 8 strains of cultivable bacteria isolated from Arctic sea-ice was studied. The results showed that strain BJ1 belonged to genus Planococcus, which was a genus of low mole percent G+C gram-positive bacteria; strain BJ6 belonged to genus Burkholderia of β- proteobacteria and the rest 6 strain all belonged to γ-proteobacteria, of which strain BJ8 was a species of Pseudoalteromonas, strain BJ2-BJ5 and BJ7 were members of genus Psychrobacter. Phylogenetic analysis also indicated that bacteria of genus Psychrobacter of the isolates formed a relatively independent phylogenetic cluster in comparison with other bacteria belonged to genus Psychrobacter.

  17. Cultivation-independent identification of candidate dehalorespiring bacteria in tetrachloroethylene degradation.

    Science.gov (United States)

    Yamasaki, Shouhei; Nomura, Nobuhiko; Nakajima, Toshiaki; Uchiyama, Hiroo

    2012-07-17

    Tetrachloroethylene (PCE) is one of the major pollutants and is degraded by dissimilation by dehalorespiring bacteria. The dehalorespiring bacteria are anaerobic, and most cannot be cultured by conventional agar plating methods. Therefore, to identify the dehalorespiring bacteria that dissimilatively degrade PCE, a cultivation-independent method is required. To achieve accurate and detailed analysis of the bacteria, we developed a novel stable isotope probing (SIP) method. This technique involves 2 steps, namely, a labeling step, in which a labeled carbon source is incorporated into the sample's DNA, and an analysis step, in which the DNA is isolated, fractionated, and analyzed by polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Subsequently, 16S rRNA sequencing and phylogenetic analysis were performed to identify the bacteria. Initially, we examined the effectiveness of this method by using Dehalococcoides ethenogenes 195 consortium as a defined model system. The result indicated the method was able to correctly identify the dehalorespiring bacteria D. ethenogenes 195 from the consortium. Moreover, in an artificially contaminated microcosm experiment, we confirmed that the method was able to identify the indigenous dehalorespiring bacteria Dehalobacter sp. Thus, we concluded that this novel method was a feasible tool to identify dehalorespiring bacteria in natural environments.

  18. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters

    Science.gov (United States)

    Martínez-Rodríguez, Julia del C.; la Mora-Amutio, Marcela De; Plascencia-Correa, Luis A.; Audelo-Regalado, Esmeralda; Guardado, Francisco R.; Hernández-Sánchez, Elías; Peña-Ramírez, Yuri J.; Escalante, Adelfo; Beltrán-García, Miguel J.; Ogura, Tetsuya

    2014-01-01

    Agave tequilana Weber var. ‘Azul’ is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria into eight different taxa that shared high homology with other known sequences. Bacterial endophytes were identified as Acinectobacter sp., A. baumanii, A. bereziniae, Cronobacter sakazakii, Enterobacter hormaechei, Bacillus sp. Klebsiella oxytoca, Pseudomonas sp., Enterococcus casseliflavus, Leuconostoc mesenteroides subsp. mesenteroides and Gluconobacter oxydans. Isolates were confirmed to be plant growth promoting bacteria (PGPB) by their capacities for nitrogen fixation, auxin production, phosphate solubilization, or antagonism against Fusarium oxysporum AC132. E. casseliflavus JM47 and K. oxytoca JM26 secreted the highest concentrations of IAA. The endophyte Acinectobacter sp. JM58 exhibited the maximum values for nitrogen fixation and phosphate solubilization index (PSI). Inhibition of fungi was found in Pseudomonas sp. JM9p and K. oxytoca JM26. Bacterial endophytes show promise for use as bio-inoculants for agave cultivation. Use of endophytes to enhance cultivation of agave may be particularly important for plants produced by micropropagation techniques, where native endophytes may have been lost. PMID:25763038

  19. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters.

    Science.gov (United States)

    Martínez-Rodríguez, Julia del C; De la Mora-Amutio, Marcela; Plascencia-Correa, Luis A; Audelo-Regalado, Esmeralda; Guardado, Francisco R; Hernández-Sánchez, Elías; Peña-Ramírez, Yuri J; Escalante, Adelfo; Beltrán-García, Miguel J; Ogura, Tetsuya

    2014-01-01

    Agave tequilana Weber var. 'Azul' is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria into eight different taxa that shared high homology with other known sequences. Bacterial endophytes were identified as Acinectobacter sp., A. baumanii, A. bereziniae, Cronobacter sakazakii, Enterobacter hormaechei, Bacillus sp. Klebsiella oxytoca, Pseudomonas sp., Enterococcus casseliflavus, Leuconostoc mesenteroides subsp. mesenteroides and Gluconobacter oxydans. Isolates were confirmed to be plant growth promoting bacteria (PGPB) by their capacities for nitrogen fixation, auxin production, phosphate solubilization, or antagonism against Fusarium oxysporum AC132. E. casseliflavus JM47 and K. oxytoca JM26 secreted the highest concentrations of IAA. The endophyte Acinectobacter sp. JM58 exhibited the maximum values for nitrogen fixation and phosphate solubilization index (PSI). Inhibition of fungi was found in Pseudomonas sp. JM9p and K. oxytoca JM26. Bacterial endophytes show promise for use as bio-inoculants for agave cultivation. Use of endophytes to enhance cultivation of agave may be particularly important for plants produced by micropropagation techniques, where native endophytes may have been lost.

  20. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters

    Directory of Open Access Journals (Sweden)

    Julia del C. Martínez-Rodríguez

    2014-12-01

    Full Text Available Agave tequilana Weber var. 'Azul' is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria into eight different taxa that shared high homology with other known sequences. Bacterial endophytes were identified as Acinectobacter sp., A. baumanii, A. bereziniae, Cronobacter sakazakii, Enterobacter hormaechei, Bacillus sp. Klebsiella oxytoca, Pseudomonas sp., Enterococcus casseliflavus, Leuconostoc mesenteroides subsp. mesenteroides and Gluconobacter oxydans. Isolates were confirmed to be plant growth promoting bacteria (PGPB by their capacities for nitrogen fixation, auxin production, phosphate solubilization, or antagonism against Fusarium oxysporum AC132. E. casseliflavus JM47 and K. oxytoca JM26 secreted the highest concentrations of IAA. The endophyte Acinectobacter sp. JM58 exhibited the maximum values for nitrogen fixation and phosphate solubilization index (PSI. Inhibition of fungi was found in Pseudomonas sp. JM9p and K. oxytoca JM26. Bacterial endophytes show promise for use as bio-inoculants for agave cultivation. Use of endophytes to enhance cultivation of agave may be particularly important for plants produced by micropropagation techniques, where native endophytes may have been lost.

  1. Sheep manure vermicompost supplemented with a native diazotrophic bacteria and mycorrhizas for maize cultivation.

    Science.gov (United States)

    Gutiérrez-Miceli, F A; Moguel-Zamudio, B; Abud-Archila, M; Gutiérrez-Oliva, V F; Dendooven, L

    2008-10-01

    An orthogonal experimental design L9 (3(4)) with 10 repetitions was used to investigate the effect of Glomus claroideum (0, 1 or 2g(-1) plant), G. fasciculatum (0, 1 or 2g plant(-1)), native diazotrophic bacteria (0, 10(3) and 10(5) UFC ml(-1)) and sheep manure vermicompost (0%, 5% and 10% v/v) on maize plant growth, N and P in leaves and mycorrhization percent. Vermicompost explained most of the variation found for leaf number, wet weight, stem height, and diameter. Both mycorrhizas increased the plant wet weight but G. fasciculatum the most. Mycorrhization increased the P content, but not the N content. Mycorrhizal colonization increased when diazotrophic bacteria and vermicompost were added. It was found that weight of maize plants cultivated in peat moss amended with vermicompost increased when supplemented with G. fasciculatum and diazotrophic bacteria.

  2. Cultivable gut bacteria of scarabs (Coleoptera: Scarabaeidae) inhibit Bacillus thuringiensis multiplication.

    Science.gov (United States)

    Shan, Yueming; Shu, Changlong; Crickmore, Neil; Liu, Chunqin; Xiang, Wensheng; Song, Fuping; Zhang, Jie

    2014-06-01

    The entomopathogen Bacillus thuringiensis is used to control various pest species of scarab beetle but is not particularly effective. Gut bacteria have diverse ecological and evolutionary effects on their hosts, but whether gut bacteria can protect scarabs from B. thuringiensis infection remains poorly understood. To investigate this, we isolated 32 cultivable gut bacteria from Holotrichia oblita Faldermann, Holotrichia parallela Motschulsky, and Anomala corpulenta Motschulsky, and analyzed their effect on B. thuringiensis multiplication and Cry toxin stability. 16S rDNA analysis indicated that these gut bacteria belong to the Proteobacteria, Actinobacteria, Firmicutes, and Bacteroidetes phyla. A confrontation culture analyses of the 32 isolates against three scarab-specific B. thuringiensis strains showed that the majority of the scarab gut bacteria had antibacterial activity against the B. thuringiensis strains. The Cry toxin stability analysis results showed that while several strains produced proteases capable of processing the scarab-specific toxin Cry8Ea, none were able to completely degrade it. These results suggest that gut bacteria can potentially affect the susceptibility of scarabs to B. thuringiensis and that this should be considered when considering future control measures.

  3. In Vitro Cultivation of 'Unculturable' Oral Bacteria, Facilitated by Community Culture and Media Supplementation with Siderophores.

    Science.gov (United States)

    Vartoukian, Sonia R; Adamowska, Aleksandra; Lawlor, Megan; Moazzez, Rebecca; Dewhirst, Floyd E; Wade, William G

    2016-01-01

    Over a third of oral bacteria are as-yet-uncultivated in-vitro. Siderophores have been previously shown to enable in-vitro growth of previously uncultivated bacteria. The objective of this study was to cultivate novel oral bacteria in siderophore-supplemented culture media. Various compounds with siderophore activity, including pyoverdines-Fe-complex, desferricoprogen and salicylic acid, were found to stimulate the growth of difficult-to-culture strains Prevotella sp. HOT-376 and Fretibacterium fastidiosum. Furthermore, pyrosequencing analysis demonstrated increased proportions of the as-yet-uncultivated phylotypes Dialister sp. HOT-119 and Megasphaera sp. HOT-123 on mixed culture plates supplemented with siderophores. Therefore a culture model was developed, which incorporated 15 μg siderophore (pyoverdines-Fe-complex or desferricoprogen) or 150 μl neat subgingival-plaque suspension into a central well on agar plates that were inoculated with heavily-diluted subgingival-plaque samples from subjects with periodontitis. Colonies showing satellitism were passaged onto fresh plates in co-culture with selected helper strains. Five novel strains, representatives of three previously-uncultivated taxa (Anaerolineae bacterium HOT-439, the first oral taxon from the Chloroflexi phylum to have been cultivated; Bacteroidetes bacterium HOT-365; and Peptostreptococcaceae bacterium HOT-091) were successfully isolated. All novel isolates required helper strains for growth, implying dependence on a biofilm lifestyle. Their characterisation will further our understanding of the human oral microbiome.

  4. Identification of Major Cultivable Aerobic Bacteria in the Oral Cavity of Malaysian Subjects

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    Koshy Philip

    2008-01-01

    Full Text Available Culture dependent and culture independent methods have shown that about 600 species of bacteria inhabit the human oral cavity. While some oral microorganisms have a direct link to dental caries, periodontal disease and halitosis, opportunistic pathogens may be responsible for systemic diseases such as bacterial endocarditis, aspiration pneumonia, osteomyelitis in children, preterm low birth weight, coronary heart disease and cerebral infarction (or stroke. This study employs bacterial 16S rDNA sequences to rapidly identify the major cultivable aerobic bacteria in the oral cavity of Malaysian subjects. The data obtained shows that the oral cavity of healthy volunteers contains a number of potentially pathogenic organisms including Streptococcus pneumoniae and Staphylococcus aureus. The need to profile and characterize these microorganisms using rapid detection methods can go a long way in developing future management strategies in clinical setting to enhance oral health in the Malaysian population.

  5. Cultivation of nitrite-dependent anaerobic methane-oxidizing bacteria: impact of reactor configuration.

    Science.gov (United States)

    Hu, Baolan; He, Zhanfei; Geng, Sha; Cai, Chen; Lou, Liping; Zheng, Ping; Xu, Xinhua

    2014-09-01

    Nitrite-dependent anaerobic methane oxidation (n-damo) is mediated by bacteria that anaerobically oxidize methane coupled with nitrite reduction and is a potential bioprocess for wastewater treatment. In this work, the effect of reactor configuration on n-damo bacterial cultivation was investigated. A magnetically stirred gas lift reactor (MSGLR), a sequencing batch reactor (SBR), and a continuously stirred tank reactor (CSTR) were selected to cultivate the bacteria. Microbial community was monitored by using quantitative PCR, 16S rRNA gene sequencing, pmoA gene sequencing, and fluorescence in situ hybridization (FISH). The effects of substrate inhibition, methane mass transfer, and biomass washout in the three reactors were focused on. The results indicated that the MSGLR had the best performance among the three reactor systems, with the highest total and specific n-damo activities. Its maximum volumetric nitrogen removal rate was up to 76.9 mg N L(-1) day(-1), which was higher than previously reported values (5.1-37.8 mg N L(-1) d(-1)).

  6. Palladium nanoparticles produced by fermentatively cultivated bacteria as catalyst for diatrizoate removal with biogenic hydrogen

    Energy Technology Data Exchange (ETDEWEB)

    Hennebel, T.; Fitts, J.; Nevel, S. V.; Verschuere, S.; De Corte, S.; De Gusseme, B.; Cuvelier, C.; van der Lelie, D.; Boon, N.; Verstraete, W.

    2011-05-17

    A new biological inspired method to produce nanopalladium is the precipitation of Pd on a bacterium, i.e., bio-Pd. This bio-Pd can be applied as catalyst in dehalogenation reactions. However, large amounts of hydrogen are required as electron donor in these reactions resulting in considerable costs. This study demonstrates how bacteria, cultivated under fermentative conditions, can be used to reductively precipitate bio-Pd catalysts and generate the electron donor hydrogen. In this way, one could avoid the costs coupled to hydrogen supply. The catalytic activities of Pd(0) nanoparticles produced by different strains of bacteria (bio-Pd) cultivated under fermentative conditions were compared in terms of their ability to dehalogenate the recalcitrant aqueous pollutants diatrizoate and trichloroethylene. While all of the fermentative bio-Pd preparations followed first order kinetics in the dehalogenation of diatrizoate, the catalytic activity differed systematically according to hydrogen production and starting Pd(II) concentration in solution. Batch reactors with nanoparticles formed by Citrobacter braakii showed the highest diatrizoate dehalogenation activity with first order constants of 0.45 {+-} 0.02 h{sup -1} and 5.58 {+-} 0.6 h{sup -1} in batches with initial concentrations of 10 and 50 mg L{sup -1} Pd, respectively. Nanoparticles on C. braakii, used in a membrane bioreactor treating influent containing 20 mg L{sup -1} diatrizoate, were capable of dehalogenating 22 mg diatrizoate mg{sup -1} Pd over a period of 19 days before bio-Pd catalytic activity was exhausted. This study demonstrates the possibility to use the combination of Pd(II), a carbon source and bacteria under fermentative conditions for the abatement of environmental halogenated contaminants.

  7. DIVERSIDAD DE BACTERIAS CULTIVABLES DE LA COSTA DE CALETA OLIVIA, PATAGONIA, ARGENTINA Diversity Of Cultivable Bacteria From The Coast Of Caleta Olivia, Patagonia , Argentina

    Directory of Open Access Journals (Sweden)

    GRACIELA PUCCI

    Full Text Available Caleta Olivia es una ciudad que posee boyas por donde se exporta el petróleo crudo obtenido de la zona norte de la provincia de Santa Cruz, Argentina. Este trabajo tuvo como objetivo estudiar las posibilidades de utilización microbiana de petróleo crudo y sus derivados e identificar las bacterias cultivables que se encuentran presentes en la costa de Caleta Olivia. La mineralización de hidrocarburos se detectó por la producción de dióxido de carbono. Se tomaron muestras de agua de mar y sedimento intermarial de tres sitios. Se realizaron recuentos bacterianos en los medios de cultivo BBR, BRN, medio mineral con petróleo gas oil y ENDO para bacterias coliformes. Las bacterias se identificaron utilizando el sistema de Sherlock de MIDI. Las mineralizaciones evidenciaron la capacidad existente en los microorganismos para la utilización de hidrocarburos. Los recuentos de coliformes fueron negativos. Se aislaron un total de 403 cepas a las que se les realizó la extracción de ácidos grasos e identificación, de ellas solo 172 fueron identificadas por el sistema. Se distribuyeron en 32 géneros y 50 especies bacterianas. El resto, el sistema no las identificó debido a que no halló cepas similares en la base de datos del sistema. Pseudoalteromonas fue el género que más se aisló. El análisis de componentes principales asoció al verano y al otoño con la mayor biodiversidad de géneros. Se encontraron representantes de los siguientes géneros: Arthrobacter, Dietzia, Acinetobacter, Microbacterium, Micrococcus, Bacillus, Pseudomonas y Pseudoalteromonas. Estos microorganismos son citados en la bibliografía como degradadores de hidrocarburos.The aim of this work was to evaluate the oil utilization and identity of the bacterial strains present in the coast Intertidal sediments and marine water from Caleta Olivia city which were analyzed to determine bacterial counts. Five microcosms were designed for sediments and water sample. The

  8. Contribution of enrichments and resampling for sulfate reducing bacteria diversity assessment by high-throughput cultivation.

    Science.gov (United States)

    Colin, Yannick; Goñi-Urriza, Marisol; Caumette, Pierre; Guyoneaud, Rémy

    2015-03-01

    The development of new high-throughput cultivation methods aims to increase the isolation efficiency as compared to standard techniques that often require enrichment procedures to compensate the low microbial recovery. In the current study, estuarine sulfate-reducing bacteria were isolated using an anaerobic isolation procedure in 384-well microplates. Ninety-nine strains were recovered from initial sediments. Isolates were identified according to their partial 16S rRNA sequences and clustered into 13 phylotypes. Besides, the increase in species richness obtained through enrichments or resampling was investigated. Forty-four enrichment procedures were conducted and shifts in sulfate-reducing bacterial communities were investigated through dsrAB gene fingerprinting. Despite efforts in conducting numerous enrichment conditions only few of them were statistically different from initial sample. The cultural diversity obtained from 3 of the most divergent enrichments, as well as from resampled sediments equally contributed to raise the sulfate-reducing diversity up to 22 phylotypes. Enrichments (selection of metabolism) or resampling (transient populations and micro-heterogeneity) may still be helpful to assess new microbial phylotypes. Nevertheless, all the newly cultivated strains were all representatives of minor Operational Taxonomic Units and could eventually be recovered by maintaining high-throughput isolation effort from the initial sediments.

  9. Impact of mulches and growing season on indicator bacteria survival during lettuce cultivation.

    Science.gov (United States)

    Xu, Aixia; Buchanan, Robert L; Micallef, Shirley A

    2016-05-02

    In fresh produce production, the use of mulches as ground cover to retain moisture and control weeds is a common agricultural practice, but the influence that various mulches have on enteric pathogen survival and dispersal is unknown. The goal of this study was to assess the impact of different mulching methods on the survival of soil and epiphytic fecal indicator bacteria on organically grown lettuce during different growing seasons. Organically managed lettuce, cultivated with various ground covers--polyethylene plastic, corn-based biodegradable plastic, paper and straw mulch--and bare ground as a no-mulch control, was overhead inoculated with manure-contaminated water containing known levels of generic Escherichia coli and Enterococcus spp. Leaves and soil samples were collected at intervals over a two week period on days 0, 1, 3, 5, 7, 10 and 14, and quantitatively assessed for E. coli, fecal coliforms and Enterococcus spp. Data were analyzed using mixed models with repeated measures and an exponential decline with asymptote survival model. Indicator bacterial concentrations in the lettuce phyllosphere decreased over time under all treatments, with more rapid E. coli declines in the fall than in the spring (pplastic mulches in all trials, and higher enterococci levels under straw in fall 2014 (p<0.05). This study demonstrates that mulches used in lettuce production may impact the fate of enteric bacteria in soil or on lettuce, most likely in relation to soil moisture retention, and other weather-related factors, such as temperature and rainfall. The data suggest that the time between exposure to a source of enteric bacteria and harvesting of the crop is season dependent, which has implications for determining best harvest times.

  10. DIVERSIDAD DE BACTERIAS CULTIVABLES DE LA COSTA DE CALETA OLIVIA, PATAGONIA, ARGENTINA

    Directory of Open Access Journals (Sweden)

    GRACIELA PUCCI

    2009-01-01

    Full Text Available Caleta Olivia es una ciudad que posee boyas por donde se exporta el petróleo crudo obtenido de la zona norte de la provincia de Santa Cruz, Argentina. Este trabajo tuvo como objetivo estudiar las posibilidades de utilización microbiana de petróleo crudo y sus derivados e identificar las bacterias cultivables que se encuentran presentes en la costa de Caleta Olivia. La mineralización de hidrocarburos se detectó por la producción de dióxido de carbono. Se tomaron muestras de agua de mar y sedimento intermarial de tres sitios. Se realizaron recuentos bacterianos en los medios de cultivo BBR, BRN, medio mineral con petróleo gas oil y ENDO para bacterias coliformes. Las bacterias se identificaron utilizando el sistema de Sherlock de MIDI. Las mineralizaciones evidenciaron la capacidad existente en los microorganismos para la utilización de hidrocarburos. Los recuentos de coliformes fueron negativos. Se aislaron un total de 403 cepas a las que se les realizó la extracción de ácidos grasos e identificación, de ellas solo 172 fueron identificadas por el sistema. Se distribuyeron en 32 géneros y 50 especies bacterianas. El resto, el sistema no las identificó debido a que no halló cepas similares en la base de datos del sistema. Pseudoalteromonas fue el género que más se aisló. El análisis de componentes principales asoció al verano y al otoño con la mayor biodiversidad de géneros. Se encontraron repre- sentantes de los siguientes géneros: Arthrobacter, Dietzia, Acinetobacter, Microbacterium, Micrococcus, Bacillus, Pseudomonas y Pseudoalteromonas. Estos microorganismos son citados en la bibliografía como degradadores de hidrocarburos.

  11. Cultivation of Hard-To-Culture Subsurface Mercury-Resistant Bacteria and Discovery of New merA Gene Sequences

    DEFF Research Database (Denmark)

    Rasmussen, Lasse Dam; Zawadsky, C.; Binnerup, Svend Jørgen

    2008-01-01

    Mercury-resistant bacteria may be important players in mercury biogeochemistry. To assess the potential for mercury reduction by two subsurface microbial communities, resistant subpopulations and their merA genes were characterized by a combined molecular and cultivation-dependent approach...... was increased up to 2,800 times and numbers of mCFU were similar to the total number of mercury-resistant bacteria in the soils. Denaturing gradient gel electrophoresis analysis of DNA extracted from membranes suggested stimulation of growth of hard-to-culture bacteria during the preincubation. A total of 25...... of the sequences did not result in a match in the BLAST search. The results illustrate the power of integrating advanced cultivation methodology with molecular techniques for the characterization of the diversity of mercury-resistant populations and assessing the potential for mercury reduction in contaminated...

  12. Selection of proteolytic bacteria with ability to inhibit Vibrio harveyi during white shrimp (Litopenaeus vannamei cultivation

    Directory of Open Access Journals (Sweden)

    Suntinanalert, P.

    2007-03-01

    Full Text Available Five isolates of bacteria with high proteolytic activity, isolated from water samples of intensive shrimp ponds in southern Thailand, were selected to test for the ability to control the shrimp pathogen Vibrioharveyi. 70 μl of each culture broth were investigated for their ability to inhibit V. harveyi using an agar well diffusion test but only one isolate W3 gave a reasonable sized inhibition zone of 21.62 mm. This zone wassimilar to that of oxolinic acid (2 μg and sulfamethoxazole (25 μg. The W3 isolate was identified as Pseudomonas sp. Shrimp cultivation in aquaria was conducted to investigate the inhibition of V. harveyi bythe isolate W3. The experiment consisted of a treatment of the shrimp culture with an inoculum of the isolate W3 and V. harveyi (biocontrol set, a positive control set (only inoculation of V. harveyi and a negativecontrol set as without inoculation. No mortality was found in the negative control. Shrimp mortality in the biocontrol set (33% was lower than that in the positive control set (40%; however, it showed no significantdifference (p>0.05. The average numbers of V. harveyi over 12 days of the biocontrol set were lower than those in the positive control set by about 1 log cycle although the numbers were not significantly different(p>0.05. The shrimp growth rate at day 32 of cultivation was in order of the biocontrol treatment (10.17% > the negative control treatment (9.44% > the positive control set (9.28%, but no significant difference (p>0.05 was observed among treatments.

  13. Effect of wastewater-borne bacteria on algal growth and nutrients removal in wastewater-based algae cultivation system.

    Science.gov (United States)

    Ma, Xiaochen; Zhou, Wenguang; Fu, Zongqiang; Cheng, Yanling; Min, Min; Liu, Yuhuan; Zhang, Yunkai; Chen, Paul; Ruan, Roger

    2014-09-01

    Centrate, a type of nutrient-rich municipal wastewater was used to determine the effect of wastewater-borne bacteria on algal growth and nutrients removal efficiency in this study. The characteristics of algal and bacterial growth profiles, wastewater nutrient removal and effect of initial algal inoculums were systematically examined. The results showed that initial algal concentration had apparent effect on bacterial growth, and the presence of bacteria had a significant influence on algal growth pattern, suggesting symbiotic relationship between algae and bacteria at the initial stage of algae cultivation. The maximum algal biomass of 2.01 g/L with 0.1g/L initial algal inoculums concentration can be obtained during algae cultivation in raw centrate medium. The synergistic effect of centrate-borne bacteria and microalgae on algae growth and nutrient removal performance at initial fast growth stage has great potential to be applied to pilot-scale wastewater-based algae wastewater system cultivated in continuous or semi-continuous mode.

  14. Persistent Wolbachia and cultivable bacteria infection in the reproductive and somatic tissues of the mosquito vector Aedes albopictus.

    Directory of Open Access Journals (Sweden)

    Karima Zouache

    Full Text Available BACKGROUND: Commensal and symbiotic microbes have a considerable impact on the behavior of many arthropod hosts, including hematophagous species that transmit pathogens causing infectious diseases to human and animals. Little is known about the bacteria associated with mosquitoes other than the vectorized pathogens. This study investigated Wolbachia and cultivable bacteria that persist through generations in Ae. albopictus organs known to host transmitted arboviruses, such as dengue and chikungunya. METHODOLOGY/PRINCIPAL FINDINGS: We used culturing, diagnostic and quantitative PCR, as well as in situ hybridization, to detect and locate bacteria in whole individual mosquitoes and in dissected tissues. Wolbachia, cultivable bacteria of the genera Acinetobacter, Comamonas, Delftia and Pseudomonas co-occurred and persisted in the bodies of both males and females of Ae. albopictus initially collected in La Réunion during the chikungunya outbreak, and maintained as colonies in insectaries. In dissected tissues, Wolbachia and the cultivable Acinetobacter can be detected in the salivary glands. The other bacteria are commonly found in the gut. Quantitative PCR estimates suggest that Wolbachia densities are highest in ovaries, lower than those of Acinetobacter in the gut, and approximately equal to those of Acinetobacter in the salivary glands. Hybridization using specific fluorescent probes successfully localized Wolbachia in all germ cells, including the oocytes, and in the salivary glands, whereas the Acinetobacter hybridizing signal was mostly located in the foregut and in the anterior midgut. CONCLUSIONS/SIGNIFICANCE: Our results show that Proteobacteria are distributed in the somatic and reproductive tissues of mosquito where transmissible pathogens reside and replicate. This location may portend the coexistence of symbionts and pathogens, and thus the possibility that competition or cooperation phenomena may occur in the mosquito vector Ae

  15. Ecophysiological properties of cultivable heterotrophic bacteria and yeasts dominating in phytocenoses of Galindez Island, maritime Antarctica.

    Science.gov (United States)

    Vasileva-Tonkova, Evgenia; Romanovskaya, Victoria; Gladka, Galina; Gouliamova, Dilnora; Tomova, Iva; Stoilova-Disheva, Margarita; Tashyrev, Oleksandr

    2014-04-01

    Antarctic plants are stable specific microenvironments for microbial colonization that are still less explored. In this study, we investigated cultivable heterotrophic bacteria and yeasts dominating in plant samples collected from different terrestrial biotopes near Ukrainian Antarctic Base on Galindez Island, maritime Antarctica. Phylogenetic analysis revealed affiliation of the bacterial isolates to genera Pseudomonas, Stenotrophomonas, Brevundimonas, Sporosarcina, Dermacoccus, Microbacterium, Rothia and Frondihabitans, and the yeast isolates to genera Rhodosporidium, Cryptococcus, Leucosporidiella, Candida and Exophiala. Some ecophysiological properties of isolated strains were determined that are important in response to different stresses such as psychro- and halotolerance, UV-resistance and production of hydrolytic enzymes. The majority of isolates (88 %) was found to be psychrotolerant; all are halotolerant. Significant differences in survival subsequent to UV-C radiation were observed among the isolates, as measured by culturable counts. For the bacterial isolates, lethal doses in the range 80-600 J m⁻² were determined, and for the yeast isolates--in the range 300-1,000 J m⁻². Dermacoccus profundi U9 and Candida davisiana U6 were found as most UV resistant among the bacterial and yeast isolates, respectively. Producers of caseinase, gelatinase, β-glucosidase, and cellulase were detected. To the best of our knowledge, this is the first report on isolation of UV resistant strain D. profundi, and Frondihabitans strain from Antarctica, and on detection of cellulase activity in Antarctic yeast strain C. davisiana. The results obtained contribute to clarifying adaptation strategies of Antarctic microbiota and its possible role in functional stability of Antarctic biocenoses. Stress tolerant strains were detected that are valuable for ecological and applied studies.

  16. Cultivable bacteria populations associated with leaves of banana and plantain plants and their antagonistic activity against Mycosphaerella fijiensis.

    Science.gov (United States)

    Ceballos, Isabel; Mosquera, Sandra; Angulo, Mónica; Mira, John J; Argel, Luz Edith; Uribe-Velez, Daniel; Romero-Tabarez, Magally; Orduz-Peralta, Sergio; Villegas, Valeska

    2012-10-01

    Mycosphaerella fijiensis is the etiological agent of Black Sigatoka, a fungal disease that affects production of banana and plantain crops in tropical regions. The sizes of cultivable epiphytic and endophytic bacterial populations, aerobic endospore forming bacteria (AEFB), and antagonist bacteria against M. fijiensis isolated from three Musa spp. cultivars from Urabá (Colombia) were studied, in order to find a suitable screening strategy to isolate antagonistic bacteria. Most of the variability found in the epiphytic and endophytic bacterial community sizes among fruit trees was explained by the cultivar differences. We found population sizes ranging from 1.25 × 10(3) to 9.64 × 10(5) CFU/g of fresh leaf and found that 44 % of total cultivable bacteria belong to the AEFB group. We isolated 648 AEFB from three different cultivars and assessed their antagonistic activity against M. fijiensis using the cell-free supernatant obtained from bacterial liquid cultures in three different in vitro assays. Five percent of those bacteria showed higher percent inhibition than the positive control Bacillus subtilis UA321 has (percent inhibition = 84 ± 5) in the screening phase. Therefore, they were selected as antagonistic bacteria against the pathogen. The strains with the highest percentage of antagonism were found in older leaves for the three cultivars, given support to recommend this group of leaves for future samplings. Some of these isolated bacteria affected the mycelium and ascospores morphology of the fungus. They also presented in vitro characteristics related to a successful colonization of the phylloplane such as indolic compounds, surfactant production, and biofilm formation, which makes them possible, potential candidates as biological control agents.

  17. [Effect of ionizing irradiation of low intensity on the viability of Escherichia coli bacteria, cultivated in the salt buffer].

    Science.gov (United States)

    Morozov, I I; Petin, V G

    2007-01-01

    The influence of 60Co gamma-ray irradiation of low intensity (0.35 Gy/min) on the viability of Escherichia coli B/r and Escherichia coli BS-1 bacteria cultivated in salt buffer in concentration of 10(8) cell/ml was investigated. It was shown that under the doses induced the cell killing about 60-75%, the irradiated bacteria, like intact cell, were killed during the incubation process, while after the doses induced the cell killing above 99% of cell population, the bacteria viability of the both strains was increased. The increase reaches a certain value on the 2-5 the days of bacterial incubation in this conditions. The nature of observed phenomenology is vague for the present.

  18. IDENTIFICACION DE PRODUCTOS EXTRACELULARES DE DOS BACTERIAS MARINAS INHIBIDORAS DE VIBRIO PARAHAEMOLYTICUS Y EVALUACION DEL POTENCIAL USO DE ESTOS PRODUCTOS COMO CONTROL DE ESTE PATOGENO

    OpenAIRE

    LEYTON LOBOS, YANETT

    2012-01-01

    La bacteria patógena Vibrio parahaemolyticus es responsable de enfermedades gastroentéricas causadas por la ingesta de organismos marinos, principalmente moluscos contaminados. Debido a esto, en las industrias acuícolas existe un gran interés por aplicar productos bioactivos medioambientalmente inocuos que eliminen bacterias patógenas desde sus cultivos y así, reemplazar a los antibióticos usados por años, los que han generado grandes problemas de contaminación en los ecosistemas marinos. El ...

  19. Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough.

    Science.gov (United States)

    Sun, Qing-lei; Wang, Ming-qing; Sun, Li

    2015-12-01

    In this study, different culture-dependent methods were used to examine the cultivable heterotrophic bacteria in the sediments associated with two deep-sea hydrothermal vents (named HV1 and HV2) located at Iheya Ridge and Iheya North in Okinawa Trough. The two vents differed in morphology, with HV1 exhibiting diffuse flows while HV2 being a black smoker with a chimney-like structure. A total of 213 isolates were identified by near full-length 16S rRNA gene sequence analysis. Of these isolates, 128 were from HV1 and 85 were from HV2. The bacterial community structures were, in large parts, similar between HV1 and HV2. Nevertheless, differences between HV1 and HV2 were observed in one phylum, one class, 4 orders, 10 families, and 20 genera. Bioactivity analysis revealed that 25 isolates belonging to 9 different genera exhibited extracellular protease activities, 21 isolates from 11 genera exhibited extracellular lipase activities, and 13 isolates of 8 genera displayed antimicrobial activities. This is the first observation of a large population of bacteria with extracellular bioactivities existing in deep-sea hydrothermal vents. Taken together, the results of this study provide new insights into the characteristics of the cultivable heterotrophic bacteria in deep-sea hydrothermal ecosystems.

  20. Effects of Some Beneficial Bacteria in Casing Soil on Growth and Yield of Cultivated Mushroom Agaricus bisporus

    Directory of Open Access Journals (Sweden)

    Mehmet Çetin

    2016-03-01

    Full Text Available This research was carried out to determine the interaction between some bacteria naturally existing in casing soil and Agaricus bisporus (Sylvan Hauser A15 hypha in laboratory (in vitro and cultivation (in vivo conditions, and to confirm its effects on mushroom yield. Totally 32 bacteria (3 Gram (+ and 29 Fluorescent Pseudomonads was isolated from casing soil and healthy sporophores. As a result of in vitro experiment carried out to determine the effects of bacteria on mycelium growth of A. bisporus, 24 bacterial isolates were found more effective at the rate of 2 to 115% than control treatment. To determine the effects of bacterium, chosen at the end of in vitro experiments, on mushroom yield in cultivation conditions, three experiments were established in March, May and July in 2008. At the end of experiments, bacterial isolates provided 8 – 40 % increase in total yield. Population density and change in population number related to time was observed during growing period, after the inoculation of bacterial isolates into casing soil. According to the results, Pseudomonas fluorescens (T 4/2 and Ş 8, P.putida (Ş 2/1 and Ş 10 and Bacillus mycoides (T 7/2 bacterial isolates were colonized successfully both in casing soil and sporophores.

  1. Control of Cultivable IAA-Producing Bacteria by the Plant Arabidopsis thaliana and the Earthworm Aporrectodea caliginosa

    Directory of Open Access Journals (Sweden)

    Ruben Puga-Freitas

    2012-01-01

    Full Text Available Some soil microorganisms are involved in the complex interactions with plants and earthworms, through the production of indole acetic acid (IAA which modifies plant growth and development. In a factorial experiment testing the impact of the presence/absence of plants and earthworms on IAA production by cultivable bacteria, we observed that plants were decreasing IAA production of 43%, whereas earthworms were increasing it of 46%. In the presence of both plant and earthworms, IAA production was as low as in the presence of plant control, showing that plants influence on IAA production by microorganisms prevails on earthworm influence. We discuss functional reasons which could explain this result.

  2. Bacterias autótrofas y heterótrofas asociadas a nieve marina lodosa en arrecifes con escorrentía continental

    OpenAIRE

    Henao-Castro, Alejandro; Comba González, Natalia; M. Alvarado Ch, Elvira; Santamaría, Johanna

    2014-01-01

    The density of heterotrophic bacteria is greater than autotrophic in marine snow aggregates influenced by continental runoff. Four coral reef areas at different distances from the Canal del Dique served to evaluate this premise; this canal is the main source of inland resources for the coral reefs of the Nuestra Señora del Rosario archipelago in Cartagena in the Colombian Caribbean. The average density of microorganisms in marine snow aggregates was determined using epifluorescence. The resul...

  3. Daily dynamics of the number and activity of nitrogen-fixing bacteria in fallow and intensely cultivated soils

    Science.gov (United States)

    Emer, N. R.; Semenov, A. M.; Zelenev, V. V.; Zinyakova, N. B.; Kostina, N. V.; Golichenkov, M. V.

    2014-08-01

    The daily dynamics (during 33 days) of the number (colony-forming units (CFU)) of nitrogen-fixing bacteria and of the nitrogen-fixing activity (the acetylene method) were determined in a gray forest soil under a fallow land and under an intensely cultivated field. The daily dynamics of the CFUs determined on the nitrogen-free medium in the samples from both plots had wavelike patterns. The daily values of the actual and potential activities of nitrogen fixation in the samples from the fallow land plot and of the actual activity of nitrogen fixation in the samples from the intensely cultivated soil were low and close to the detection limit. The potential activity of nitrogen fixation in the intensely cultivated soil was significant and also had a wavelike pattern. The harmonic analysis of the daily dynamics of the CFUs and nitrogen fixation showed the statistically significant harmonics of these biological characteristics pointing to the objective and regular character of the wavelike dynamics. The revealed dynamics of the biological characteristics of the soils and the methods of their analysis are important in terms of the comparative study of the biological properties of different soils.

  4. Formation of Guaiacol by Spoilage Bacteria from Vanillic Acid, a Product of Rice Koji Cultivation, in Japanese Sake Brewing.

    Science.gov (United States)

    Ito, Toshihiko; Konno, Mahito; Shimura, Yoichiro; Watanabe, Seiei; Takahashi, Hitoshi; Hashizume, Katsumi

    2016-06-08

    The formation of guaiacol, a potent phenolic off-odor compound in the Japanese sake brewing process, was investigated. Eight rice koji samples were analyzed, and one contained guaiacol and 4-vinylguaiacol (4-VG) at extraordinarily high levels: 374 and 2433 μg/kg dry mass koji, respectively. All samples contained ferulic and vanillic acids at concentrations of mg/kg dry mass koji. Guaiacol forming microorganisms were isolated from four rice koji samples. They were identified as Bacillus subtilis, B. amyloliquefaciens/subtilis, and Staphylococcus gallinarum using 16S rRNA gene sequence. These spoilage bacteria convert vanillic acid to guaiacol and ferulic acid to 4-VG. However, they convert very little ferulic acid or 4-VG to guaiacol. Nine strains of koji fungi tested produced vanillic acid at the mg/kg dry mass koji level after cultivation. These results indicated that spoilage bacteria form guaiacol from vanillic acid, which is a product of koji cultivation in the sake brewing process.

  5. Cultivating High Efficient Bacteria of Degrading Pulping Wastewater by Ultraviolet Mutagenic Technology

    Institute of Scientific and Technical Information of China (English)

    WU Yi-ning; ZHANG Ying; LIU Shi-rui; REN Nan-qi

    2004-01-01

    Instead of pure bacteria, induction mutation of activated sludge by ultraviolet (Uv) was studied and used to treat pulping wastewater by continuous-flow. The result showed the mutagenic activated sludge had remarkable effect and application potential in pulping wastewater treatment. Comparing with common activated sludge, the mutagenic activated sludge was more suitable for lignose decomposition and had high decomposing efficiency.

  6. Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium

    Science.gov (United States)

    Shah, Vega; Chang, Bonnie X; Morris, Robert M

    2017-01-01

    Marine oxygen minimum zones (OMZs) are expanding regions of intense nitrogen cycling. Up to half of the nitrogen available for marine organisms is removed from the ocean in these regions. Metagenomic studies have identified an abundant group of sulfur-oxidizing bacteria (SUP05) with the genetic potential for nitrogen cycling and loss in OMZs. However, SUP05 have defied cultivation and their physiology remains untested. We cultured, sequenced and tested the physiology of an isolate from the SUP05 clade. We describe a facultatively anaerobic sulfur-oxidizing chemolithoautotroph that produces nitrite and consumes ammonium under anaerobic conditions. Genetic evidence that closely related strains are abundant at nitrite maxima in OMZs suggests that sulfur-oxidizing chemoautotrophs from the SUP05 clade are a potential source of nitrite, fueling competing nitrogen removal processes in the ocean. PMID:27434424

  7. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    C. Jeanthon

    2011-07-01

    Full Text Available Aerobic anoxygenic phototrophic (AAP bacteria play significant roles in the bacterioplankton productivity and biogeochemical cycles of the surface ocean. In this study, we applied both cultivation and mRNA-based molecular methods to explore the diversity of AAP bacteria along an oligotrophic gradient in the Mediterranean Sea in early summer 2008. Colony-forming units obtained on three different agar media were screened for the production of bacteriochlorophyll-a (BChl-a, the light-harvesting pigment of AAP bacteria. BChl-a-containing colonies represented a low part of the cultivable fraction. In total, 54 AAP strains were isolated and the phylogenetic analyses based on their 16S rRNA and pufM genes showed that they were all affiliated to the Alphaproteobacteria. The most frequently isolated strains belonged to Citromicrobium bathyomarinum, and Erythrobacter and Roseovarius species. Most other isolates were related to species not reported to produce BChl-a and/or may represent novel taxa. Direct extraction of RNA from seawater samples enabled the analysis of the expression of pufM, the gene coding for the M subunit of the reaction centre complex of aerobic anoxygenic photosynthesis. Clone libraries of pufM gene transcripts revealed that most phylotypes were highly similar to sequences previously recovered from the Mediterranean Sea and a large majority (~94 % was affiliated to the Gammaproteobacteria. The most abundantly detected phylotypes occurred in the western and eastern Mediterranean basins. However, some were exclusively detected in the eastern basin, reflecting the highest diversity of pufM transcripts observed in this ultra-oligotrophic region. To our knowledge, this is the first study to document extensively the diversity of AAP isolates and to unveil the active AAP community in an oligotrophic marine environment. By pointing out the discrepancies

  8. Exploring cultivable Bacteria from the prokaryotic community associated with the carnivorous sponge Asbestopluma hypogea.

    Science.gov (United States)

    Dupont, Samuel; Carre-Mlouka, Alyssa; Domart-Coulon, Isabelle; Vacelet, Jean; Bourguet-Kondracki, Marie-Lise

    2014-04-01

    Combining culture-dependent and independent approaches, we investigated for the first time the cultivable fraction of the prokaryotic community associated with the carnivorous sponge Asbestopluma hypogea. The heterotrophic prokaryotes isolated from this tiny sponge were compared between specimens freshly collected from cave and maintained in aquarium. Overall, 67 isolates obtained in pure culture were phylogenetically affiliated to the bacterial phyla Proteobacteria, Bacteroidetes, Actinobacteria, and Firmicutes. This cultivable diversity was lower than the prokaryotic diversity obtained by previous pyrosequencing study and comparable to that of another Mediterranean demosponge, the filter-feeding Phorbas tenacior. Furthermore, using fluorescence in situ hybridization, we visualized bacterial and archaeal cells, confirming the presence of both prokaryotes in A. hypogea tissue. Approximately 16% of the bacterial isolates tested positive for chitinolytic activity, suggesting potential microbial involvement in the digestion processes of crustacean prey by this carnivorous sponge. Additionally, 6% and 16% of bacterial isolates revealed antimicrobial and antioxidant activities, respectively. One Streptomyces sp. S1CA strain was identified as a promising candidate for the production of antimicrobial and antioxidant secondary metabolites as well as chitinolytic enzymes. Implications in the context of the sponge biology and prey-feeding strategy are discussed.

  9. Antimicrobial activities of novel cultivable bacteria isolated from marine sponge Tedania anhelans

    Institute of Scientific and Technical Information of China (English)

    ZENG Zhen; ZHAO Jing; KE Caihuan; WANG Dexiang

    2013-01-01

    Marine sponge Tedania anhelans distributes throughout the intertidal zone of Fujian,southeastern China,and is a potential source of natural bioactive products.The sponge harbors a large number of bacterial groups that have been identified using various techniques,including fluorescent in situ hybridization (FISH).Fractionation of dissociated sponge allowed isolation of 25 bacterial species.Based on 16S rRNA gene sequencing,phylogenetic analysis attributed most of these eubacteria to a-Proteobacteria,γ-Proteobacteria,Cytophaga/Flavobacterium/Bacteroidetes (CFB group),and the family Bacillaceae of Gram-positive bacteria.In sequence similarity,five putatively novel species were identified with less than 98% similarity to other strains in the NCBI database.Tests for antimicrobial activities were performed against Gram-positive bacteria,Gram-negative bacteria,fungi,antitumor indicators Escherichia coli 343/591 (with DNA repair deficiency),regular E.coli 343/636 (with different DNA repair capacity),and 10 bacterial isolates exhibited inhibitory bioactivities.Among these strains,three isolates were detected involving function gene NRPS-A domains,which were most closely related to the amino acid sequences of linear gramicidin synthetase and pyoverdine synthetase.These results contribute to our knowledge of the microbes associated with marine sponges and further reveal novel bacterial resources for the screening of bioactive marine natural products.

  10. Diversidad de bacterias cultivables de la costa de Caleta Olivia, Patagonia, Argentina

    Directory of Open Access Journals (Sweden)

    pucci graciela natalia

    2009-12-01

    Full Text Available Caleta Olivia es una ciudad que posee boyas de por donde se exporta el petróleo crudo obtenido de la zona norte de la provincia de Santa Cruz –Argentina. Este trabajo tuvo como objetivo estudiar las posibilidades de utilización microbiana de petróleo crudo e identificar las bacterias que se encuentran presentes en la costa. La mineralización de hidrocarburos se siguió por la producción de dióxido de carbono. Se tomaron muestras de agua de mar y sedimento intermarial de tres sitios. Se realizaron recuentos bacterianos en los medios de cultivo BBR, BRN medio mineral con petróleo gas oil y ENDO para bacterias coliformes. Las bacterias se identificaron utilizando el sistema de Sherlock de MIDI. Las mineralizaciones evidenciaron la capacidad existente de los microorganismos para la utilización de hidrocarburos. Los recuentos de coliformes fueron negativos. Se aislaron un total de 403 cepas a las que se les realizó la extracción de ácidos grasos e identificación, de ellas solo 172 fueron identificadas por el sistema. Se distribuyeron en 32 géneros y 50 especies bacterianas. El resto el sistema no las identificó debido a que no halló cepas similares en la base de datos del sistema. Las Pseudoalteromonas fueron el género que más se aisló. El análisis de componentes principales asocio al verano y al otoño con la mayor biodiversidad de géneros. Se encontraron representantes de los siguientes géneros Arthrobacter, Dietzia, Acinetobacter, Microbacterium, Micrococcus, Bacillus, Pseudomonas y Pseudoalteromonas. Estos microorganismos son citados en la bibliografía como degradadores de hidrocarburos.

  11. Temporal Eukarya, Bacteria, and Archaea biodiversity during cultivation of an alkaliphilic algae, Chlorella vulgaris, in an outdoor raceway pond

    Directory of Open Access Journals (Sweden)

    Tisza Ann Szeremy Bell

    2016-01-01

    Full Text Available Algal biofuels and valuable co-products are being produced in both open and closed cultivation systems. Growing algae in open pond systems may be a more economical alternative, but this approach allows environmental microorganisms to colonize the pond and potentially infect or outcompete the algal crop. In this study, we monitored the microbial community of an outdoor, open raceway pond inoculated with a high lipid-producing alkaliphilic alga, Chlorella vulgaris BA050. The strain C. vulgaris BA050 was previously isolated from Soap Lake, Washington, a system characterized by a high pH (approximately 9.8. An outdoor raceway pond (200L was inoculated with C. vulgaris and monitored for ten days and then the culture was transferred to a 2,000L raceway pond and cultivated for an additional six days. Community DNA samples were collected over the 16-day period in conjunction with water chemistry analyses and cell counts. Universal primers for the SSU rRNA gene sequences for Eukarya, Bacteria, and Archaea were used for barcoded pyrosequence determination. The environmental parameters that most closely correlated with C. vulgaris abundance were pH and phosphate. Community analyses indicated that the pond system remained dominated by the Chlorella population (93% of eukaryotic sequences, but was also colonized by other microorganisms. Bacterial sequence diversity increased over time while archaeal sequence diversity declined over the same time period. Using SparCC co-occurrence network analysis, a positive correlation was observed between C. vulgaris and Pseudomonas sp. throughout the experiment, which may suggest a symbiotic relationship between the two organisms. The putative relationship coupled with high pH may have contributed to the success of C. vulgaris. The characterization of the microbial community dynamics of an alkaliphilic open pond system provides significant insight into open pond systems that could be used to control photoautotrophic

  12. Effect of free radicals and cultivation media on radiation sensitivities of escherichia coli and related bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Ito, Hitoshi [Japan Atomic Energy Research Inst., Takasaki, Gunma (Japan). Takasaki Radiation Chemistry Research Establishment

    2000-09-01

    Effects of gamma-irradiation on some strains of Escherichia coli, Salmonella enteritidis and Staphylococcus aureus were investigated in the presence of N{sub 2}, N{sub 2}O and O{sub 2} and with the hydroxyl radical (OH) scavengers glycerol, polyethylene glycerol and formate. Injured cell membrane of bacteria was detected using with MacConkey agar for E. coli and S. enteritidis and 7% NaCl Triptic soy agar for St. aureus instead of Tryptic soy agar for recovery medium. From this study, addition of glycerol significantly reduced the sensitivity in all of strains, and cell membrane was not injured significantly except in radiation sensitive strain E. coli A4-1. When superoxide radicals (O{sub 2}) were generated during irradiation in the presence of formate, injured cell membrane increased significantly in all of strains. However, molecular oxygen (O{sub 2}) and OH radicals also had some effects on the damage of cell membrane. These results suggest that most radiation induced cell lethality was responsible to the cooperative effects of intracellular OH radicals and O{sub 2} on DNA with lessor effect of damage on cell membrane by O{sub 2} radicals, O{sub 2} and OH radicals. On the radiation sensitive strain of E. coli, cell lethality occurred significantly by the injury of cell membrane compared with other strains. (author)

  13. Eliminating aluminum toxicity in an acid sulfate soil for rice cultivation using plant growth promoting bacteria.

    Science.gov (United States)

    Panhwar, Qurban Ali; Naher, Umme Aminun; Radziah, Othman; Shamshuddin, Jusop; Razi, Ismail Mohd

    2015-02-20

    Aluminum toxicity is widely considered as the most important limiting factor for plants growing in acid sulfate soils. A study was conducted in laboratory and in field to ameliorate Al toxicity using plant growth promoting bacteria (PGPB), ground magnesium limestone (GML) and ground basalt. Five-day-old rice seedlings were inoculated by Bacillus sp., Stenotrophomonas maltophila, Burkholderia thailandensis and Burkholderia seminalis and grown for 21 days in Hoagland solution (pH 4.0) at various Al concentrations (0, 50 and 100 μM). Toxicity symptoms in root and leaf were studied using scanning electron microscope. In the field, biofertilizer (PGPB), GML and basalt were applied (4 t·ha-1 each). Results showed that Al severely affected the growth of rice. At high concentrations, the root surface was ruptured, leading to cell collapse; however, no damages were observed in the PGPB inoculated seedlings. After 21 days of inoculation, solution pH increased to >6.0, while the control treatment remained same. Field study showed that the highest rice growth and yield were obtained in the bio-fertilizer and GML treatments. This study showed that Al toxicity was reduced by PGPB via production of organic acids that were able to chelate the Al and the production of polysaccharides that increased solution pH. The release of phytohormones further enhanced rice growth that resulted in yield increase.

  14. Diverse Profiles of AI-1 Type Quorum Sensing Molecules in Cultivable Bacteria from the Mangrove (Kandelia obovata) Rhizosphere Environment

    Science.gov (United States)

    Ma, Zhi P.; Lao, Yong M.; Jin, Hui; Lin, Guang H.; Cai, Zhong H.; Zhou, Jin

    2016-01-01

    Mangrove rhizosphere environment harbors diverse populations of microbes, and some evidence showed that rhizobacteria behavior was regulated by quorum sensing (QS). Investigating the diverse profiles of QS molecules in mangrove ecosystems may shed light on the bacterial roles and lead to a better understanding of the symbiotic interactions between plants and microbes. The aims of the current study focus on identifying AI-1 type QS signals, i.e., acyl homoserine lactones (AHLs), in Kandelia obovata rhizosphere environment. Approximately 1200 rhizobacteria were screened and 184 strains (15.3%) tested were positive. Subsequent 16s rRNA gene sequencing and dereplication analyses identified 24 species from the positive isolates, which were affiliated to three different phyla, including Proteobacteria, Firmicutes, and Actinobacteria. Thin-layer chromatography separation of extracts revealed diverse AHL profiles and detected at least one active compound in the supernatant of these 24 cultivable AHL-producers. The active extracts from these bacterial isolates were further evaluated by ultra performance liquid chromatography-mass spectrometry, and the carbon side chain length ranged from C4 to C14. This is the first report on the diversity of AI-1 type auto-inducers in the mangrove plant K. obovata, and it is imperative to expand our knowledge of plant-bacteria interactions with respect to the maintenance of wetland ecosystem health. PMID:27994584

  15. Cultivating conditions effects on kefiran production by the mixed culture of lactic acid bacteria imbedded within kefir grains.

    Science.gov (United States)

    Zajšek, Katja; Goršek, Andreja; Kolar, Mitja

    2013-08-15

    The influence of fermentation temperature, agitation rate, and additions of carbon sources, nitrogen sources, vitamins and minerals on production of kefiran by kefir grains lactic acid bacteria was studied in a series of experiments. The main aim of the work was to increase the exopolysaccharide (EPS) production where customised milk was used as fermentation medium. It was proved that the controlling of culturing conditions and the modifying of fermentation medium conditions (i.e., carbon, nitrogen, mineral sources and vitamins) can dramatically enhance the production of the EPS. The temperature and agitation rate were critical for kefiran production during the 24 h cultivation of grains; our optimised conditions being 25°C and 80 rpm, respectively. In addition, when optimising the effects of additional nutrition, it was found that 5% (w/v) lactose, 0.1% (w/v) thiamine, and 0.1% (w/v) FeCl3 led to the maximal production of EPS. The results indicate that nutrients can be utilised to improve the production of EPS and that good kefir grains growth does not appear to be a determining factor for a high production yield of EPS.

  16. Diverse Profiles of AI-1 Type Quorum Sensing Molecules in Cultivable Bacteria from the Mangrove (Kandelia obovata Rhizosphere Environment

    Directory of Open Access Journals (Sweden)

    Zhiping Ma

    2016-12-01

    Full Text Available Mangrove rhizosphere environment harbors diverse populations of microbes, and some evidence showed that rhizobacteria behavior was regulated by quorum sensing (QS. Investigating the diverse profiles of QS molecules in mangrove ecosystems may shed light on the bacterial roles and lead to a better understanding of the symbiotic interactions between plants and microbes. The aims of the current study focus on identifying AI-1 type QS signals, i.e. acyl homoserine lactones (AHLs, in Kandelia obovata rhizosphere environment. Approximately 1200 rhizobacteria were screened and 184 strains (15.3% tested were positive. Subsequent 16s rRNA gene sequencing and dereplication analyses identified 24 species from the positive isolates, which were affiliated to three different phyla, including Proteobacteria, Firmicutes and Actinobacteria. Thin-layer chromatography (TLC separation of extracts revealed diverse AHL profiles and detected at least one active compound in the supernatant of these 24 cultivable AHL-producers. The active extracts from these bacterial isolates were further evaluated by ultra performance liquid chromatography-mass spectrometry (UPLC-MS, and the carbon side chain length ranged from C4 to C14. This is the first report on the diversity of AI-1 type auto-inducers in the mangrove plant K. obovata, and it is imperative to expand our knowledge of plant-bacteria interactions with respect to the maintenance of wetland ecosystem health.

  17. Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica

    Science.gov (United States)

    Pinheiro, Guilherme L.; Correa, Raquel F.; Cunha, Raquel S.; Cardoso, Alexander M.; Chaia, Catia; Clementino, Maysa M.; Garcia, Eloi S.; de Souza, Wanderley; Frasés, Susana

    2015-01-01

    The enzymatic hydrolysis of cellulose by cellulases is one of the major limiting steps in the conversion of lignocellulosic biomass to yield bioethanol. To overcome this hindrance, significant efforts are underway to identify novel cellulases. The snail Achatina fulica is a gastropod with high cellulolytic activity, mainly due to the abundance of glycoside hydrolases produced by both the animal and its resident microbiota. In this study, we partially assessed the cellulolytic aerobic bacterial diversity inside the gastrointestinal tract of A. fulica by culture-dependent methods and evaluated the hydrolytic repertoire of the isolates. Forty bacterial isolates were recovered from distinct segments of the snail gut and identified to the genus level by 16S rRNA gene sequence analysis. Additional phenotypic characterization was performed using biochemical tests provided by the Vitek2 identification system. The overall enzymatic repertoire of the isolated strains was investigated by enzymatic plate assays, containing the following substrates: powdered sugarcane bagasse, carboxymethylcellulose (CMC), p-nitrophenyl-β-D-glucopyranoside (pNPG), p-nitrophenyl-β-D-cellobioside (pNPC), 4-methylumbelliferyl-β-D-glucopyranoside (MUG), 4-methylumbelliferyl-β-D-cellobioside (MUC), and 4-methylumbelliferyl-β-D-xylopyranoside (MUX). Our results indicate that the snail A. fulica is an attractive source of cultivable bacteria that showed to be valuable resources for the production of different types of biomass-degrading enzymes. PMID:26347735

  18. Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica

    Directory of Open Access Journals (Sweden)

    Guilherme L. Pinheiro

    2015-08-01

    Full Text Available The enzymatic hydrolysis of cellulose by cellulases is one of the major limiting steps in the conversion of lignocellulosic biomass to yield bioethanol. To overcome this hindrance, significant efforts are underway to identify novel cellulases. The snail Achatina fulica is a gastropod with high cellulolytic activity, mainly due to the abundance of glycoside hydrolases produced by both the animal and its resident microbiota. In this study, we partially assessed the cellulolytic bacterial diversity inside the gastrointestinal tract of A. fulica by culture-dependent methods and evaluated the hydrolytic repertoire of the isolates. Forty bacterial isolates were recovered from distinct segments of the snail gut and identified to the genus level by 16S rRNA gene sequence analysis. Additional phenotypic characterization was performed using biochemical tests provided by the Vitek2 identification system. The overall enzymatic repertoire of the isolated strains was investigated by enzymatic plate assays, containing the following substrates: powdered sugarcane bagasse, carboxymethylcellulose (CMC, p-nitrophenyl-b-D-glucopyranoside (pNPG, p-nitrophenyl-b-D-cellobioside (pNPC, 4-methylumbelliferyl-b-D-glucopyranoside (MUG, 4-methylumbelliferyl-b-D-cellobioside (MUC and 4-methylumbelliferyl-b-D-xylopyranoside (MUX. Our results indicate that the snail Achatina fulica is an attractive source of cultivable bacteria that showed to be valuable resources for the production of different types of biomass-degrading enzymes.

  19. Isolation of cultivable thermophilic lactic acid bacteria from cheeses made with mesophilic starter and molecular comparison with dairy-related Lactobacillus helveticus strains

    DEFF Research Database (Denmark)

    Jensen, Marie Elisabeth Penderup; Ardö, Ylva Margareta; Vogensen, Finn Kvist

    2009-01-01

    Aims: To isolate cultivable thermophilic lactic acid bacteria from cheeses made with mesophilic starter and compare them with dairy-related Lactobacillus helveticus strains using molecular typing methods. Methods and Results: The number of thermophilic bacteria in seven commercial cheeses......-related Lact. helveticus strains indicated that one isolate was a Lact. helveticus. Partial sequencing of 16S rRNA confirmed this, and the remaining four strains were identified as Lactobacillus delbrueckii, Lactobacillus fermentum and Enterococcus faecium. The rep-PCR profile of the isolated Lact. helveticus...

  20. Cellular viability of Saccharomyces cerevisiae cultivated in association with contaminates bacteria of alcoholic fermentation;Viabilidade celular de Saccharomyces cerevisiae cultivada em associacao com bacterias contaminantes da fermentacao alcoolica

    Energy Technology Data Exchange (ETDEWEB)

    Nobre, Thais de Paula

    2005-07-01

    The aim of this work was to study the influence of the bacteria Bacillus and Lactobacillus, as well as their metabolic products, in reduction of cellular viability of Saccharomyces cerevisiae, when in mixed culture of yeast and active and treated bacteria. Also was to evaluated an alternative medium (MCC) for the cultivation of bacteria and yeast, constituted of sugarcane juice diluted to 5 deg Brix and supplemented with yeast extract and peptone. The bacteria Bacillus subtilis, Bacillus coagulans, Bacillus stearothermophilus, Lactobacillus fermentum and Lactobacillus plantarum were cultivated in association with yeast Saccharomyces cerevisiae (strain Y-904) for 72 h on 32 deg C, under agitation. The cellular viability, budding rate and population of S. cerevisiae, the total acidity, volatile acidity and pH of culture were determined from 0, 24, 48 e 72 h of mixed culture. Also were determined the initial and final of microorganism population across the pour plate method, in traditional culture medium (PCA for Bacillus, MRS-agar for Lactobacillus and YEPD-agar for yeast S. cerevisiae) and in medium constituted of sugarcane juice. The bacteria cultures were treated by heat sterilization (120 deg C for 20 minutes), antibacterial agent (Kamoran HJ in concentration 3,0 ppm) or irradiation (radiation gamma, with doses of 5,0 kGy for Lactobacillus and 15,0 kGy for Bacillus). The results of the present research showed that just the culture mediums more acids (with higher concentrations of total and volatile acidity, and smaller values of pH), contaminated with active bacteria L. fermentum and B. subtilis, caused reduction on yeast cellular viability. Except the bacteria B. subtilis treated with radiation, the others bacteria treated by different procedures (heat, radiation e antibacterial) did not cause reduction on yeast cellular viability and population, indicating that the isolated presence of the cellular metabolic of theses bacteria was not enough to reduce the

  1. A genetic discontinuity in root-nodulating bacteria of cultivated pea in the Indian trans-Himalayas.

    Science.gov (United States)

    Rahi, Praveen; Kapoor, Riti; Young, J P W; Gulati, Arvind

    2012-01-01

    Evolutionary relationships of 120 root-nodulating bacteria isolated from the nodules of Pisum sativum cultivated at 22 different locations of the trans-Himalayan valleys of Lahaul and Spiti in the state of Himachal Pradesh of India were studied using 16S rRNA gene PCR-RFLP, ERIC-PCR, sequencing of 16S rRNA, atpD, recA, nodC and nifH genes, carbon-source utilization pattern (BIOLOG™), and whole-cell fatty acid profiling. The results demonstrated that all isolates belonged to Rhizobium leguminosarum symbiovar viciae (Rlv). Isolates from the two valleys were clearly separated on the basis of ERIC fingerprints, carbon-source utilization pattern, and whole-cell fatty acid methyl esters. Phylogenetic analysis of atpD, recA, nodC and nifH genes revealed a common Rlv sublineage in Spiti valley. Lahaul valley isolates were represented by three sequence types of atpD and recA genes, and four sequence types of nodC and nifH genes. Genotypes from the two valleys were completely distinct, except for two Lahaul isolates that shared nodC and nifH sequences with Spiti isolates but were otherwise more similar to other Lahaul isolates. Isolates from the two highest Spiti valley sites (above 4000 m) had a distinctive whole-cell fatty acid profile. Spiti valley isolates are closely related to Rlv sublineages from Xinjiang and Shanxi provinces in China, while Lahaul valley isolates resemble cosmopolitan strains of the western world. The high mountain pass between these valleys represents a boundary between two distinct microbial populations.

  2. How do Bacteria Adapt to the Red Sea? Cultivation and Genomic and Physiological Characterization of Oligotrophic Bacteria of the PS1, OM43, and SAR11 Clades

    KAUST Repository

    Jimenez Infante, Francy M.

    2015-05-01

    Given the high salinity, prevailing annual high temperatures, and ultra-oligotrophic conditions in the Red Sea isolation and characterization of important microbial groups thriving in this environment is important in understanding the ecological significance and metabolic capabilities of these communities. By using a high-­throughput cultivation technique in natural seawater amended with minute amounts of nutrients, members of the rare biosphere (PS1), methylotrophic Betaproteobacteria (OM43), and the ubiquitous and abundant SAR11 group (Pelagibacterales), were isolated in pure culture. Phylogenetic analyses of Red Sea isolates along with comparative genomics with close representatives from disparate provinces revealed ecotypes and genomic differentiation among the groups. Firstly, the PS1 alphaproteobacterial clade was found to be present in very low abundance in several metagenomic datasets form divergent environments. While strain RS24 (Red Sea) harbored genomic islands involved in polymer degradation, IMCC14465 (East (Japan) Sea) contained unique genes for degradation of aromatic compounds. Secondly, methylotrophic OM43 bacteria from the Red Sea (F5, G12 and H7) showed higher similarities with KB13 isolate from Hawaii, forming a ‘H-­RS’ (Hawaii-­Red Sea) cluster separate from HTCC2181 (Oregon isolate). HTCC2181 members were shown to prevail in cold, productive coastal environments and had an nqrA-­F system for energy generation by sodium motive force. On the contrary, H-­RS cluster members may be better adapted to warm and oligotrophic environments, and seem to generate energy by using a proton-­translocating NADH:Quinone oxidoreductase (complex I; nuoA-­N subunits). Moreover, F5, G12, and H7 had unique proteins related to resistance to UV, temperature and salinity, in addition to a heavy metal ‘resistance island’ as adaptive traits to cope with the environmental conditions in the Red Sea. Finally, description of the Red Sea Pelagibacterales

  3. Biodiversity of Dominant Cultivable Endophytic Bacteria Inhabiting Tissues of Six Different Cultivars of Maize (Zea mays L. ssp. mays) Cropped under Field Conditions.

    Science.gov (United States)

    Pisarska, Katarzyna; Pietr, Stanisław Jerzy

    2015-01-01

    Endophytic bacteria (EnB) play a crucial role in plant development. This study was an attempt to isolate and identify dominant cultivable EnB inhabiting young seedlings germinated in vitro and leaves of six maize cultivars grown under field conditions at temperate climate zone with culture-dependent approach. We isolated bacteria from field cropped maize only. Strains were identified based on 16S rRNA gene sequencing. In particular, members of Actinobacteria, Bacteroidetes, Firmicutes and α- and γ-Proteobacteria were found. Species of two genus Pseudomonas and Bacillus were dominant among them. Higher diversity of EnB was found in plants collected from Kobierzyce, where we identified 35 species from 16 genera with 22 species uniquely found at this field. On the contrary, from maize leaves collected at Smolice we identified 24 species representing 10 genera with 10 species uniquely isolated from this field. However, none of species was common for all cultivars at both locations. Among isolated EnB six species only, Pseudomonas clemancea, Pseudomonasfluorescens, Bacillus megaterium, Bacillus simplex, Arthrobacter nicotinovorans and Arthrobacter nitroguajacolicus, were found in aboveground parts of the same cultivar grown on both tested fields. The fact that the same cultivars, sown from the same lots of seeds, under field conditions on two different locations were colonized with noticeably different associations of cultivable EnB suggest that cultivar genotype is an important factor selecting endophytic bacteria from local agro-environment. To our knowledge this is first report about the significant variation of diversity of cultivable endophytic bacteria inhabiting aboveground parts of the same maize cultivars grown at different locations.

  4. Phycospheric Native Bacteria Pelagibaca bermudensis and Stappia sp. Ameliorate Biomass Productivity of Tetraselmis striata (KCTC1432BP) in Co-cultivation System through Mutualistic Interaction

    Science.gov (United States)

    Park, Jungsoo; Park, Bum Soo; Wang, Pengbin; Patidar, Shailesh K.; Kim, Jin Ho; Kim, Sae-Hee; Han, Myung-Soo

    2017-01-01

    Effective sustainable algal cultivation techniques are essential for mass production of the marine microalga Tetraselmis for biofuel and array of co-products. The phycospheric communities affect the microalgal growth and metabolism through various allelochemical and nutrient interactions; hence, their potential to affect the quantity and quality of both biomass and bioproducts is significant. In the present study, we have screened the phycospheric communities of biofuel producing Tetraselmis striata (KCTC1432BP). A total of 26 bacterial strains were isolated and identified from the phycosphere of T. striata mass culture. Then, each bacterial strain was tested in co-cultivation conditions with T. striata for evaluating its growth promoting and inhibitory effects. Among these all strains, two promising strains (Pelagibaca bermudensis KCTC 13073BP and Stappia sp. KCTC 13072BP) were selected because of their maximum growth promoting effects and mutualistic interactions. The growth rate, biomass productivity, lipid contents, and fatty acids were analyzed during their combined growth in O3 media and compared with axenic growth of T. striata. Later, growth promoting mechanisms in the co-cultivation environment were investigated for these promising bacterial strains under replete and limited conditions of nutrients (nitrate, phosphate, and vitamin B12). The growth promoting potential of P. bermudensis was illustrated by the two fold enhancement in biomass productivity. These bacteria are promising for microalgal cultivation without any negative effects on the native seawater bacterial communities, as revealed by next generation sequencing analysis. This study represents, to date, the first report highlighting the role of phycospheric growth promoting bacteria of promising biofuel feedstock T. striata. PMID:28321229

  5. ANALISIS AKTIVITAS ANTIBAKTERI EKSTRAK DAUN MANGROVE Avicennia marina DARI KABUPATEN TRENGGALEK DAN KABUPATEN PASURUAN TERHADAP PERTUMBUHAN Staphylococcus aureus DAN Vibrio alginolyticus

    Directory of Open Access Journals (Sweden)

    Ridha Handriany Danada

    2014-04-01

    and Vibrio alginolyticus. The test results showed phytochemical content of alkaloids, flavonoids and saponins in the extracts of A. marina from both locations. However, the compound Terpenoid and Tannins are found only in stations with certain conditions. The test results of antibacterial activity of the extracts of leaves of A. marina Trenggalek and Pasuruan against S. aureus showed an average yield of clear zone diameter of 4.43 to 5.79 mm and against V. alginolyticus of 4.25 to 5.48 mm. This indicates that A. marina mangrove leaf extract can inhibit the growth of bacteria S. aureus and V. alginolyticus. Differences habitat does not have a significant impact on the ability of inhibition, but the composition of bioactive compounds.Keywords: antibacterial activity, Avicennia marina, Pasuruan, secondary metabolites, Trenggalek

  6. Artificial seed germination and seedling production ofZostera marina L. by salinity manipulation

    Institute of Scientific and Technical Information of China (English)

    LIU Yunlong; ZHANG Xuelei; SONG Wei; WANG Zongling

    2016-01-01

    Vast declines inZostera marina seagrass beds demand effective methods of rehabilitation. In this study, we developed a practical method by reducing salinity to induce seed germination followed with recovering salinity to facilitate seedling production ofZ. marina. The results showed thatZ. marina seeds collected from natural seawater (salinity 30) were induced to germinate at reduced salinities. Percent germination (GR) was higher and mean-time-to-germinate (MTG) was shorter at lower salinities. The highestGR and shortestMTG occurred at salinity 0 (deionized freshwater). After germination in freshwater, seeds could develop into seedlings at salinities 5–30 and continue the growth. Viability or development of germinated seeds was not significantly different during the 40 d of post-germination incubation at salinities 5–15 after 1–20 d of germination in freshwater. However, during the process of translating germinated seeds from salinity 0 and 5 to salinity 30, reducing the gradients of post-germination acclimation facilitated more seeds forming seedlings in less time. On average, after 60 d of static incubation, including 20 d in freshwater for germination followed with immediate shift to salinity 5 and increasing to salinity 30 at increment of 5 every two days until cultivation at constant salinity 30, 33% ofZ. marina seeds produced healthy seedlings. The results indicate that the salinity-manipulation based method of artificial germination and seedling production is practical and effective in supporting rehabilitation ofZ. marina bed.

  7. Microbiological changes and biodiversity of cultivable indigenous bacteria in Sanbao larger yellow croaker (Pseudosciaena crocea), a Chinese salted and fermented seafood.

    Science.gov (United States)

    Zhang, He; Li, Yan; Xu, Kunhua; Wu, Jiajia; Dai, Zhiyuan

    2015-04-01

    Sanbao large yellow croaker is a kind of Chinese salted and fermented seafood processed by adding 50% of salt and fermenting at high temperature [around 30 °C] over 20 d. To get a comprehensive understanding of cultivable microorganism's diversity present in its fermentation, the chemical and microbial properties of this product, were detected initially, followed by identification of bacteria recovered from different fermentation periods using PCR-RFLP and 16S rRNA gene sequencing analysis. In total, 105 indigenous isolates were recovered with 3 different medium and majority of the isolates picked up from both MRS and MSA medium were finally clustered into the genus of Staphylococcus (S.). Among the 90 Staphylococci, S. xylosus, S. saprophyticus, and S. nepalensis were the most prevailing cultivable species recovered throughout the whole production process (70 isolates, 77.8%), while 5 other species, namely, S. aureus, S. vitulinus, S. sciuri, S. equorum, and S. succinus formed a minor fraction (20 isolates, 22.2%) of the Staphylococcus communities. Lactic acid bacteria, Pseudomonas, Proteus, and Bacillus constituted trivial populations in the initial period of the fermentation and then gave the way to the Staphylococcus immediately. High salt concentration used during the processing is like to have a pronounced influence on the microbial populations involved. Data obtained in this work could be referred in control and optimization of the fermentation process and selecting suitable strains for aquatic product fermentation.

  8. Cuantificación de bacterias cultivables mediante el método de “Goteo en Placa por Sellado (o estampado Masivo”

    Directory of Open Access Journals (Sweden)

    Yolanda Elizabeth Morales-García

    2012-08-01

    Full Text Available Título en ingles: Quantification of cultivable bacteria by the “Massive Stamping Drop Plate” method Resumen: Cuando se desea cuantificar el número de bacterias presentes en múltiples muestras, los procedimientos de rutina suelen consumir mucho tiempo. En ese periodo las muestras podrían sufrir modificaciones en su población. En el presente trabajo se evaluó una metodología alternativa para cuantificar bacterias cultivables de forma masiva, rápida y económica en la que se implica el sellado, estampado o impresión de diluciones seriadas de muestras de diversa procedencia. El tiempo requerido para preparar 22 muestras para su sellado en placa es de 15 minutos. El método se basó en realizar diluciones seriadas (base 10 de las muestras líquidas originales contenidas en una placa multipozos con la ayuda de una pipeta multicanal. Después, con un replicador se tomó un volumen (aproximadamente 1,65 µl de muestra de cada pozo, que se inoculó por sellado en un medio de crecimiento gelificado de interés. Las placas se incubaron el tiempo necesario, se contó el número de colonias presentes en la dilución contable y se calculó el número de Unidades Formadoras de Colonia por mililitro (UFC/ml para cada muestra. La metodología se denominó “Goteo por Sellado en Placa Masivo” (GSPM y ha sido aplicada para cuantificar exitosamente bacterias provenientes de diferentes muestras de laboratorio, por ejemplo, de cultivos líquidos, muestras clínicas (como exudados y secreciones y bacterias presentes en la rizósfera de plantas de maíz. Sin embargo, la metodología GSPM podría aplicarse para contabilizar masivamente a bacterias de cualquier otra procedencia. Palabras clave: UFC; goteo en placa; plaqueo; vaciado en placa; GSPM. Abstract: In an attempt to quantify the number of bacteria present in a high number of samples, routine procedures are usually very time-consuming. During this period of time, bacterial population could be

  9. Different bacterial communities associated with the roots and bulk sediment of the seagrass Zostera marina

    DEFF Research Database (Denmark)

    Jensen, Sheila Ingemann; Kühl, Michael; Priemé, Anders

    2007-01-01

    The bacterial community of Zostera marina-inhabited bulk sediment vs. root-associated bacteria was investigated by terminal restriction fragment length polymorphism and sequencing, and the spatial extension of the oxygen loss from roots was determined by oxygen microsensors. Extensive oxygen loss...... was found in the tip region of the youngest roots, and most of the rhizoplane of Z. marina roots was thus anoxic. A significant difference between the bacterial communities associated with the roots and bulk sediment was found. No significant differences were found between differently aged root...

  10. 一种分离培养硫酸盐还原菌的改进方法%A IMPROVED METHOD FOR ISLATION AND CULTIVATION OF SULFATE-REDUCING BACTERIA

    Institute of Scientific and Technical Information of China (English)

    万海清; 苏仕军; 葛长海; 万雪松; 朱家骅

    2003-01-01

    On the base of the characteristics of sulfate-reducing bacteria (SRB) growth and dish cultivated method, a new method for isolation and cultivation of SRB is established. It is dilution spread and repeat dish sandwish cultivated method with the exellence of dilution spread and embeded growth, and it can help separation and identification of SRB. The method has simple operation and less equipment. And using this method, the natural SRB drop was successfully gained, and small agar pieces containing SRB drop were acquired in easiness. The brief SRB transfering operation in strict anaerobic condition was in-deed realized. Fig 1, Ref 7.

  11. Louisiana Marinas and Boat Launches, Geographic NAD83, LOSCO (2004) [marinas_LOSCO_2004

    Data.gov (United States)

    Louisiana Geographic Information Center — The dataset defines the location and supplemental information for marinas and boat launches in southern Louisiana. The boat launch database includes public and...

  12. High cell density cultivation of recombinant yeasts and bacteria under non-pressurized and pressurized conditions in stirred tank bioreactors.

    Science.gov (United States)

    Knoll, Arnd; Bartsch, Stefan; Husemann, Bernward; Engel, Philip; Schroer, Kirsten; Ribeiro, Betina; Stöckmann, Christoph; Seletzky, Juri; Büchs, Jochen

    2007-10-31

    This study demonstrates the applicability of pressurized stirred tank bioreactors for oxygen transfer enhancement in aerobic cultivation processes. The specific power input and the reactor pressure was employed as process variable. As model organism Escherichia coli, Arxula adeninivorans, Saccharomyces cerevisiae and Corynebacterium glutamicum were cultivated to high cell densities. By applying specific power inputs of approx. 48kWm(-3) the oxygen transfer rate of a E. coli culture in the non-pressurized stirred tank bioreactor was lifted up to values of 0.51moll(-1)h(-1). When a reactor pressure up to 10bar was applied, the oxygen transfer rate of a pressurized stirred tank bioreactor was lifted up to values of 0.89moll(-1)h(-1). The non-pressurized stirred tank bioreactor was able to support non-oxygen limited growth of cell densities of more than 40gl(-1) cell dry weight (CDW) of E. coli, whereas the pressurized stirred tank bioreactor was able to support non-oxygen limited growth of cell densities up to 225gl(-1) CDW of A. adeninivorans, 89gl(-1) CDW of S. cerevisiae, 226gl(-1) CDW of C. glutamicum and 110gl(-1) CDW of E. coli. Compared to literature data, some of these cell densities are the highest values ever achieved in high cell density cultivation of microorganisms in stirred tank bioreactors. By comparing the specific power inputs as well as the k(L)a values of both systems, it is demonstrated that only the pressure is a scaleable tool for oxygen transfer enhancement in industrial stirred tank bioreactors. Furthermore, it was shown that increased carbon dioxide partial pressures did not remarkably inhibit the growth of the investigated model organisms.

  13. Oasis desert farming selects environment-specific date palm root endophytic communities and cultivable bacteria that promote resistance to drought

    KAUST Repository

    Cherif, Hanene

    2015-07-21

    Oases are desert-farming agro-ecosystems, where date palm (Phoenix dactyliferaL.) plays a keystone role in offsetting the effects of drought and maintaining a suitable microclimate for agriculture. At present, abundance, diversity and plant growth promotion (PGP) of date palm root-associated bacteria remain unknown. Considering the environmental pressure determined by the water scarcity in the desert environments, we hypothesized that bacteria associated with date palm roots improve plant resistance to drought. Here, the ecology of date palm root endophytes from oases in the Tunisian Sahara was studied with emphasis on their capacity to promote growth under drought. Endophytic communities segregated along a north-south gradient in correlation with geo-climatic parameters. Screening of 120 endophytes indicated that date palm roots select for bacteria with multiple PGP traits. Bacteria rapidly cross-colonized the root tissues of different species of plants, including the original Tunisian date palm cultivar, Saudi Arabian cultivars and Arabidopsis. Selected endophytes significantly increased the biomass of date palms exposed to repeated drought stress periods during a 9-month greenhouse experiment. Overall, results indicate that date palm roots shape endophytic communities that are capable to promote plant growth under drought conditions, thereby contributing an essential ecological service to the entire oasis ecosystem. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  14. Cultivation and qPCR detection of pathogenic and antibiotic resistant bacteria establishment in naive broiler houses

    Science.gov (United States)

    : Conventional commercial broiler production involves the rearing of more than 20,000 broilers in a single confined space, atop bedding material such as pine shavings or rice hulls, for approximately 6.5 weeks. This environment is known for harboring pathogens and antibiotic resistant bacteria, but ...

  15. Oasis desert farming selects environment-specific date palm root endophytic communities and cultivable bacteria that promote resistance to drought.

    Science.gov (United States)

    Cherif, Hanene; Marasco, Ramona; Rolli, Eleonora; Ferjani, Raoudha; Fusi, Marco; Soussi, Asma; Mapelli, Francesca; Blilou, Ikram; Borin, Sara; Boudabous, Abdellatif; Cherif, Ameur; Daffonchio, Daniele; Ouzari, Hadda

    2015-08-01

    Oases are desert-farming agro-ecosystems, where date palm (Phoenix dactylifera L.) plays a keystone role in offsetting the effects of drought and maintaining a suitable microclimate for agriculture. At present, abundance, diversity and plant growth promotion (PGP) of date palm root-associated bacteria remain unknown. Considering the environmental pressure determined by the water scarcity in the desert environments, we hypothesized that bacteria associated with date palm roots improve plant resistance to drought. Here, the ecology of date palm root endophytes from oases in the Tunisian Sahara was studied with emphasis on their capacity to promote growth under drought. Endophytic communities segregated along a north-south gradient in correlation with geo-climatic parameters. Screening of 120 endophytes indicated that date palm roots select for bacteria with multiple PGP traits. Bacteria rapidly cross-colonized the root tissues of different species of plants, including the original Tunisian date palm cultivar, Saudi Arabian cultivars and Arabidopsis. Selected endophytes significantly increased the biomass of date palms exposed to repeated drought stress periods during a 9-month greenhouse experiment. Overall, results indicate that date palm roots shape endophytic communities that are capable to promote plant growth under drought conditions, thereby contributing an essential ecological service to the entire oasis ecosystem.

  16. Diversity of cultivable bacteria involved in the formation of macroscopic microbial colonies (Cave silver on the walls of a cave in Slovenia

    Directory of Open Access Journals (Sweden)

    Blagajana Herzog Velikonja

    2014-01-01

    Full Text Available Karstic caves often support white, yellow, grey or pink microbial colonies that are termed ‘cave silver’ by speleologists. Using various sample pre-treatments and culture media, a wide variety of bacteria associated with these colonies were recovered from a cave in Slovenia, Pajsarjeva jama. Decreasing the inoculum size resulted in significant increases in viable counts, while pre-treatments had the opposite effect with the exception of microwave irradiation. While all growth media yielded viable counts, the maximal counts were observed on a low-nutrient TWA medium. Based on the 16S rRNA gene sequence of OTU representatives, the majority of the 80 isolates examined belonged to Streptomyces (25%, Micrococcus (16% and Rhodococcus (10% Other abundant groups were Pseudomonas (9%, Agrobacterium (8%, Lysobacter (6% and Paenibacillus (5%, while members of genera Microbacterium, Agrococcus, Arthrobacter, Bacillus, Kocuria, Oerskovia, Sphingomonas, Aerococcus, and Bosea represented a minor portion of cultivable diversity encountered. Members of Streptomyces and Agrobacterium were common to all samples. Although these microorganisms readily form colonies under laboratory conditions, they were unrelated to abundant environmental phylotypes recovered from same samples in a previous study. However, the comparative 16S rRNA analysis showed that microorganisms highly related to the ones obtained in this study were cultivated from other subterranean environments indicating that they might represent true microbial cave dwellers.

  17. [The influence of ionizing radiation of high intensity on the viability of Escherichia coli bacteria, cultivated in the salt buffer without nutrient additions].

    Science.gov (United States)

    Morozov, I I; Morozova, G V; Petin, V G

    2005-01-01

    The influence of 60Co gamma-ray radiation of high intensity (85 Gy/min) on the viability of E. coli B/r and E. coli BS-1 bacteria, cultivated in salt buffer with the concentration about 10(8) cells/ml, was studied. It was determined that under the doses, which induce about 80% of death of the cells, the irradiated bacteria, just like the intact cells, die during the incubation processes, while under the doses induced the death of cells above 95%, the cells viability of the both strains increases and reaches the constant value by the byhend 2nd-5th days of incubation in these conditions. In the result of the differences of the reactions of the intact and irradiated with different doses of radiation microorganisms on the incubation during their postradiational period in the phosphate buffer we have the fact of the absence of the dependence of the effect from the dose, or the decreasing of the consequences of the radiation under the increasing of the dose of the radiation. The nature of this phenomenology while stays not understood.

  18. Biodegradação do diclosulam por bactérias isoladas de solos cultivados com soja Diclosulam biodegration by bacteria isolated from soybean cultivated soils

    Directory of Open Access Journals (Sweden)

    N.R. Rodrigues

    2010-06-01

    Full Text Available Este trabalho teve como objetivo avaliar a capacidade de degradação do herbicida diclosulam por bactérias. Essas bactérias foram isoladas de solos procedentes de três importantes regiões de cultivo de soja do Brasil, as quais receberam a aplicação do herbicida diclosulam. Os testes foram conduzidos em shaker, sendo utilizado um meio de cultivo sintético. As características avaliadas foram: massa de glicose e diclosulam consumidos, velocidade de degradação do diclosulam e massa celular produzida. Embora todas elas tenham sido capazes de utilizar o diclosulam, os resultados indicaram que Klebsiella sp. foi mais eficiente e promissora para ser utilizada na biorremediação de áreas contaminadas com esse composto.This work aimed to evaluate diclosulam degradation by ten bacteria strains isolated from soils collected from three important soybean cultivation regions in Brazil. The tests were conducted in a shaker using a synthetic medium. The evaluated parameters were: glucose mass and diclosulam consumed, diclosulam degradation rate, and cell mass produced. Although all the 10 bacteria strains could use diclosulam, the results showed that the bacterium strain Klebsiella sp. was the most efficient and promising for bioremediation of diclosulam-contaminated areas.

  19. A simple strategy for investigating the diversity and hydrocarbon degradation abilities of cultivable bacteria from contaminated soil.

    Science.gov (United States)

    Bučková, Maria; Puškarová, Andrea; Chovanová, Katarína; Kraková, Lucia; Ferianc, Peter; Pangallo, Domenico

    2013-06-01

    The use of indigenous bacterial strains is a valuable bioremediation strategy for cleaning the environment from hydrocarbon pollutants. The isolation and selection of hydrocarbon-degrading bacteria is therefore crucial for obtaining the most promising strains for site decontamination. Two different media, a minimal medium supplemented with a mixture of polycyclic aromatic hydrocarbons and a MS medium supplemented with triphenyltetrazolium chloride, were used for the isolation of bacterial strains from two hydrocarbon contaminated soils and from their enrichment phases. The hydrocarbon degradation abilities of these bacterial isolates were easily and rapidly assessed using the 2,6-dichlorophenol indophenol assay. The diversity of the bacterial communities isolated from these two soil samples and from their enrichment phases was evaluated by the combination of a bacterial clustering method, fluorescence ITS-PCR, and bacterial identification by 16S rRNA sequencing. Different PCR-based assays were performed in order to detect the genes responsible for hydrocarbon degradation. The best hydrocarbon-degrading bacteria, including Arthrobacter sp., Enterobacter sp., Sphingomonas sp., Pseudomonas koreensis, Pseudomonas putida and Pseudomonas plecoglossicida, were isolated directly from the soil samples on minimal medium. The nahAc gene was detected only in 13 Gram-negative isolates and the sequences of nahAc-like genes were obtained from Enterobacter, Stenotrophomonas, Pseudomonas brenneri, Pseudomonas entomophila and P. koreensis strains. The combination of isolation on minimal medium with the 2,6-dichlorophenol indophenol assay was effective in selecting different hydrocarbon-degrading strains from 353 isolates.

  20. Diseño de un medio de cultivo sintético para la obtención de una proteína con actividad antitumoral a partir de una bacteria marina

    OpenAIRE

    Núñez, R.R.; Villaverde, M.J.; Almazán, V.; Pita, A.; Ortiz, E.; Pérez, R. M.

    2002-01-01

    En este trabajo se presenta la capacidad que tiene una bacteria aislada de los sedimentos de la Bahía de la Habana de producir un compuesto antitumoral. Su objetivo fue seleccionar un medio de cultivo donde se sustituyera el agua de mar por componentes sintéticos y se alcanzaran altas concentraciones de proteínas con actividad antitumoral. Los resultados arrojaron que esta cepa crece y produce este compuesto en ausencia de agua de mar y que la glucosa es la fuente preferencial de carbono para...

  1. Patrimonio Natural y Reservas Marinas

    Directory of Open Access Journals (Sweden)

    Raquel de la Cruz Modino

    2004-01-01

    Full Text Available Las reservas marinas intentan preservar ciertas zonas de especial interés biológico de los excesos de la pesca con el fin de asegurar la protección, la regeneración y el desarrollo de los recursos marinos. Con ellas se aspira a regular las diferentes actividades que en estas áreas se llevan a cabo y conjugar los usos turísticos y recreativos que se pueden realizar con la conservación de sus valores naturales. Sin embargo, por norma general, la regulación sobre los usos que pueden desarrollarse en áreas naturales especialmente frágiles como éstas, se restringe a establecer una serie de limitaciones sobre las actividades que son llevadas a cabo en la zona. La implantación de figuras como éstas, dentro de un contexto turístico, puede alentar y promover el desarrollo de actividades recreativas frente a los usos tradicionales, que han podido quedar limitados en el área protegida

  2. Diversidad de bacterias cultivables con capacidad de degradar hidrocarburos de la playa de Caleta Córdova, Argentina

    Directory of Open Access Journals (Sweden)

    Graciela N. Pucci

    2011-05-01

    Full Text Available En el presente trabajo se estudiaron las comunidades bacterianas aisladas de agua de mar y sedimentos intermareales de Caleta Córdova, norte de Comodoro Rivadavia, Argentina. Tres sitios fueron muestreados estacionalmente entre los años 2005 y 2006; el primer sitio fue una playa pública, el segundo sitio cerca de un puerto pesquero y el tercero cerca de una boya de toma de petróleo. Las comunidades bacterianas fueron determinadas en base a las diferencias en la composición de ácidos grasos de membrana, las bacterias fueron identificadas por medio del Sistema Sherlock MIDI, y el potencial de las comunidades para la utilización de hidrocarburos por la mineralización de gasoil, petróleo, kerosene, aceite lubricante y nafta. Las mineralizaciones evidenciaron la capacidad de los microorganismos para la degradación de hidrocarburos en dos de los sitios estudiados. Se aislaron 251 cepas de las que se lograron identificar 124 correspondientes a 24 géneros y 40 especies; la más frecuente fue Pseudoalteromonas.

  3. 33 CFR 80.1118 - Marina Del Rey, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Marina Del Rey, CA. 80.1118 Section 80.1118 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light...

  4. Relevance of Nitrospira for nitrite oxidation in a marine recirculation aquaculture system and physiological features of a Nitrospira marina-like isolate.

    Science.gov (United States)

    Keuter, Sabine; Kruse, Myriam; Lipski, André; Spieck, Eva

    2011-09-01

    In biofilters of recirculation aquaculture systems (RAS), nitrification by lithoautotrophic microorganisms is essential to prevent the cultivated organisms from intoxication with ammonium and nitrite. In moving-bed biofilters nitrifying microorganisms are immobilized together with heterotrophic bacteria in dense biofilms on carrier elements like plastic beads. Analyses of fatty acid profiles of these biofilms from a marine biofilter revealed a high abundance of Nitrospira-related lipid markers (8-12% of total fatty acids). Further results of a labeling experiment with (13) C-bicarbonate in mineral salts medium with 3 mM nitrite confirmed that Nitrospira is the major autotrophic nitrite oxidizer in the biofilter system. According to 16S rRNA gene sequence analyses the nitrite-oxidizing community in the biofilter consisted of at least two different representatives of Nitrospira, one of which could be successfully isolated. The marine isolate 'Ecomares 2.1' belongs to cluster IVa and showed 98.8% 16S rRNA gene sequence similarity to Nitrospira marina, whereas the enrichment 'M1 marine' is only distantly related (94.0% 16S rRNA gene sequence similarity to N. marina). In laboratory experiments, the isolate exhibited remarkable tolerances against high substrate and product concentrations (30 mM nitrite and 80 mM nitrate) as well as ammonium (50 mM). During the isolation process a strong tendency of this strain to develop biofilms became apparent. Thus, Ecomares 2.1 seems to be well adapted to the attached lifestyle in biofilters and the nitrogenous load prevailing in the effluent waters of RAS. Both members of Nitrospira could be detected by PCR-based methods in environmental samples of marine and brackish RAS biofilters and are therefore considered to be characteristic for these engineered ecosystems.

  5. Changes of plasma membrane ATPase activity,membrane potential and transmembrane proton gradient in Kandelia candel and Avicennia marina seedlings with various salinities

    Institute of Scientific and Technical Information of China (English)

    ZHAO Zhong-qiu; ZHENG Hai-lei; ZHU Yong-guan

    2004-01-01

    The salt-secreting mangrove, Avicennia marina, and non-salt-secreting mangrove, Kandelia candel were cultivated in sand with various salinities(0 ‰, 10 ‰, 20 ‰, 30 ‰, 40 ‰) for 60 d. Plasma membrane vesicles of high-purity in leaves and roots of A.marina and K. candel seedlings were obtained by two-phase partitioning. The function of the plasma membranes, the activity of ATPase, membrane potential and transmembrane proton gradient, at various salinities were investigated. The results showed that within a certain range of salinity(A. marina and roots of K. candel: 0-30‰;leaves of K.candel: 0-20‰), the activity of ATPase increased with increasing salinity, while high salinity(above 30‰ or 20‰) inhibited ATPase activity. In comparison with A. marina, K. candel appeared to be more sensitive to salinity. The dynamics of membrane potential and transmembrane proton gradient in leaves and roots of A. marina and K. candel seedlings were similar to that of ATPase. When treated directly by NaCl all the indexes were inhibited markedly: there was a little increase within 0-10‰(K. candel) or 0-20‰(A. marina) followed by sharp declining. It indicated that the structure and function of plasma membrane was damaged severely.

  6. Eelgrass (Zostera marina) tolerance to anoxia

    DEFF Research Database (Denmark)

    Pulido Pérez, Cristina; Borum, Jens

    2010-01-01

    The tolerance of eelgrass (Zostera marina L.) to anoxia was assessed experimentally to evaluate the potential role of short-term anoxia on eelgrass performance. Eelgrass ramets (terminal leaf bundles with rhizomes and roots) were submerged in anoxic seawater for variable periods of time (0.5 to 48...

  7. Sulfide intrusion and detoxification in Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Holmer, Marianne

    2014-01-01

    indicating a possible role of sulfide in the sulfur nutrition beside the detoxification function. Our results suggest different adaptations of Z. marina to reduced sediments and sulfide intrusion ranging from bacterial and chemical reoxidation of sulfide to sulfate to incorporation of sulfide into organic...

  8. Esteróles en esponjas marinas

    Directory of Open Access Journals (Sweden)

    Carmenza Duque

    2009-07-01

    Full Text Available Esta revisión bibliográfica comprende la mayona del trabajo publicado hasta el momento sobre esteróles aislados de esponjas marinas. Estos esteróles comprenden compuestos desde Cig hasta C31 con estructuras convencionales y con estructuras novedosas (núcleo y/o cadena lateral no convencional.

  9. Perspectivas de la biología marina

    OpenAIRE

    Bigatti, G.

    2013-01-01

    La biología marina es una rama de las ciencias del mar de reciente desarrollo en la Argentina (oceáno Atlántico sudoccidental) que está en franco crecimiento. Se muestra un panorama del desarrollo de las diversas disciplinas, como los estudios sobre la biodiversidad marina y de la biología marina y pesquera, así como amenazas a los ambientes marinos y medidas de conservación tomadas. Se incluyen las perspectivas para futuros estudios de biología marina, los beneficios de las iniciativas de di...

  10. Production of L-lactic acid from a mixture of xylose and glucose by co-cultivation of lactic acid bacteria.

    Science.gov (United States)

    Taniguchi, M; Tokunaga, T; Horiuchi, K; Hoshino, K; Sakai, K; Tanaka, T

    2004-12-01

    The production of optically pure lactic acid in a high yield from xylose or a mixture of xylose and glucose, which is a model hydrolysate of lignocellulose, is described. In a single cultivation, Enterococcus casseliflavus produced 38 g/l of lactic acid with an optical purity of 96% enantiomeric excess (ee) and 6.4 g/l of acetic acid from 50 g/l of xylose when MRS medium was used. When a mixture of 50 g/l of xylose and 100 g/l of glucose was used as the carbon source in a cultivation of E. casseliflavus alone, glucose was converted to lactic acid in the early phase of the cultivation but xylose was hardly consumed. In a co-cultivation where E. casseliflavus and Lactobacillus casei specific for glucose were simultaneously inoculated, little or no lactic acid was produced after the glucose was almost consumed. A co-cultivation with two-stage inoculation (in which E. casseliflavus was added at a cultivation time of 40 h after L. casei cells were inoculated) resulted in complete consumption of 50 g/l of xylose and 100 g/l of glucose. In the co-cultivation, 95 g/l of lactic acid with a high optical purity of 96% ee was obtained at 192 h. Such a co-cultivation using two microorganisms specific for each sugar is considered to be one promising cultivation technique for the efficient production of lactic acid from a sugar mixture derived from lignocellulose.

  11. Marina Laikjõe : palm on eestlasele puhkuse sünonüüm / Marina Laikjõe

    Index Scriptorium Estoniae

    Laikjõe, Marina, 1967-

    2003-01-01

    Reisikorraldusfirma Domina World Traveli tegevjuht Marina Laikjõe annab ülevaate eestlaste reisimisharjumustest, populaarsematest sihtkohtadest ning prognoosib võimalikke trende Eesti turismiturul.

  12. Marina Kaljurand : Venemaad ei tohi karta! Siin pole midagi karta! / Marina Kaljurand ; interv. Jaanus Piirsalu

    Index Scriptorium Estoniae

    Kaljurand, Marina, 1962-

    2008-01-01

    Intervjuu kolm aastat Moskvas töötanud Eesti suursaadiku Marina Kaljurannaga, kes vastab küsimustele, mis puudutavad Eesti-Vene suhteid, saadikutööd, diplomaatiat, aprillirahutusi, naiste osakaalu diplomaatide seas ja erilisi suhteid patriarh Aleksius II-ga

  13. Armastus teeb tugevaks / Marina Laikjõe ; interv. Verni Leivak

    Index Scriptorium Estoniae

    Laikjõe, Marina, 1967-

    2008-01-01

    Turismifirma Tez Tour tegevjuht ning reisifirma Travel-In juht Marina Laikjõe vastab küsimustele, mis puudutavad tema tegevust ja karjääri turisminduses, suhteid kolleegidega ning perekonna toetust raske haigusega võitlemise ajal. Kommenteerivad Reet Kivi, Tiit Pärnik. Lisa: Marina Laikjõe

  14. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Marina del Rey Harbor, Calif. 110.111 Section 110.111 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.111 Marina del Rey Harbor, Calif. An area in the main channel within the...

  15. Contaminación marina en el Perú.

    OpenAIRE

    Guillen., Oscar; Ashtu, Victor; Aquino, Rosa

    1980-01-01

    Este informe muestra las principales causas de contaminación marina debido a los desechos domésticos e industriales, hidrocarburos de petroleo a fin de mostrar la situación actual de la contaminación marina.

  16. 33 CFR 80.1124 - Ventura Marina, CA.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Ventura Marina, CA. 80.1124 Section 80.1124 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn...

  17. De serpientes marinas y otros monstruos

    OpenAIRE

    1994-01-01

    A mediados de marzo del corriente año distintos medios informaron que en el paraje Arenas Verdes, cerca de la Iocalidad bonaerense de Necochea, se había avistado una especie de "serpiente marina". Más de treinta personas habrían observado un animal “con cabeza de tortuga sostenida por un larguísimo cuello parecido al de un cisne y con aletas a lo largo iguales a las de los dinosaurios". Para otros testigos, se trataría de un animal con "un lomo enorme... de mas o menos tres metros de largo. T...

  18. La dinámica marina

    OpenAIRE

    2003-01-01

    En este trabajo se realiza una revisión general de los aspectos generales de la dinámica marina, especialmente centrado en playas y la parte más cercana a la costa de la plataforma. Es evidente que la dinámica de erosión, transporte y depósito de sedimentos, jugará un papel fundamental en la removilización de contaminantes. Formas de acumulación más profundas, jugarán un papel fundamental como reservónos de contaminantes. También es importante, ...

  19. Antioxidant and antimicrobial activity of a mangrove plant Avicennia marina (Forsk.)

    Institute of Scientific and Technical Information of China (English)

    Pooja Moteriya; Ashish Dalsaniya; Sumitra Chanda

    2015-01-01

    Objective: To evaluate the antioxidant and antimicrobial potential of different parts (leaf, stem and pneumatophore) of a mangrove plant Avicennia marina (Forsk.) Vierh (Avicenniaceae). Methods: The extraction was done by cold percolation method using solvents of hexane, ethyl acetate, acetone, methanol and water. Total phenol and flavonoid content were measured by Folin-Ciocalteu’s reagent and aluminium chloride colorimetric method respectively. The antioxidant activity was evaluated using antioxidant assays of 2,2-diphenyl-1-picrylhydrazyl free radical scavenging activity, superoxide radical scavenging assay, 2,2’-azino-bis-(3-ethyl) benzothiazoline-6-sulfonic acid, ferric reducing antioxidant power and reducing capacity assessment. The antibacterial activity was done by agar well diffusion method against four Gram-positive, four Gram-negative bacteria and four fungi. Results: Different antioxidant assays showed different levels of activity in different parts and different solvent extracts. Overall, acetone extract of stem showed the best antioxidant activity. The Gram-positive bacteria were more susceptible than Gram-negative bacteria and fungi. Conclusions: The results indicated extract of Avicennia marina can be used as a promising source of natural antioxidant.

  20. Quorum sensing in sourdough Lactobacillus plantarum DC400: induction of plantaricin A (PlnA) under co-cultivation with other lactic acid bacteria and effect of PlnA on bacterial and Caco-2 cells.

    Science.gov (United States)

    Di Cagno, Raffaella; De Angelis, Maria; Calasso, Maria; Vincentini, Olimpia; Vernocchi, Pamela; Ndagijimana, Maurice; De Vincenzi, Massimo; Dessì, Maria Rita; Guerzoni, Maria Elisabetta; Gobbetti, Marco

    2010-06-01

    This work aimed at showing the effect of pheromone plantaricin A (PlnA) by Lactobacillus plantarum DC400 towards other sourdough lactic acid bacteria and the potential of PlnA to protect the function of the human intestinal barrier. Growth and survival of sourdough lactic acid bacteria were differently affected by co-cultivation with L. plantarum DC400. Compared to mono-cultures, Lactobacillus sanfranciscensis DPPMA174 and Pediococcus pentosaceus 2XA3 showed growth inhibition and decreased viability when co-cultured with L. plantarum DC400. L. sanfranciscensis DPPMA174 induced the highest synthesis of PlnA. Survival of strain DPPMA174 only slightly varied by comparing the addition of PlnA to the culture medium and the co-cultivation with L. plantarum DC400. Compared to mono-culture, the proteome of L. sanfranciscensis DPPMA174 grown in co-culture with L. plantarum DC400 showed the variation of expression of 58 proteins (47 over expressed and 11 repressed). Thirty-four of them were also over expressed or repressed during growth of DPPMA174 with PlnA. Fifty-one of the above 58 proteins were identified. They had a central role in stress response, amino acid, energy and nucleotide metabolisms, membrane transport, regulation of transcription, and cell redox homeostasis. PlnA markedly increased the viability of human Caco-2/TC7 cells and the transepithelial electrical resistance.

  1. Thiohalocapsa marina sp. nov., from an Indian marine aquaculture pond.

    Science.gov (United States)

    Anil Kumar, P; Srinivas, T N R; Thiel, V; Tank, M; Sasikala, Ch; Ramana, Ch V; Imhoff, J F

    2009-09-01

    A spherical-shaped, phototrophic, purple sulfur bacterium was isolated in pure culture from anoxic sediment in a marine aquaculture pond near Bheemli (India). Strain JA142T is Gram-negative and non-motile. It has a requirement for NaCl (optimum of 2% and maximum of 6% w/v NaCl). Intracellular photosynthetic membranes are of the vesicular type. In vivo absorption spectra indicate the presence of bacteriochlorophyll a and carotenoids of the okenone series as photosynthetic pigments. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA142T is related to halophilic purple sulfur bacteria of the genera Thiohalocapsa and Halochromatium, with the highest sequence similarity to Thiohalocapsa halophila DSM 6210T (97.5%). Morphological and physiological characteristics differentiate strain JA142T from other species of the genera Halochromatium and Thiohalocapsa. Strain JA142T is sufficiently different from Thiohalocapsa halophila based on 16S rRNA gene sequence analysis and morphological and physiological characteristics to allow the proposal of a novel species, Thiohalocapsa marina sp. nov., with the type strain JA142T (=JCM 14780T=DSM 19078T).

  2. Blue carbon stocks in Baltic Sea eelgrass (Zostera marina) meadows

    DEFF Research Database (Denmark)

    Rohr, Maria Emilia; Bostrom, Christoffer; Canal-Vergés, Paula;

    2016-01-01

    Although seagrasses cover only a minor fraction of the ocean seafloor, their carbon sink capacity accounts for nearly one-fifth of the total oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. We sampled 10 eelgrass (Zostera marina) meadows...... density, porosity and silt content. In addition, our analysis show that the root : shoot ratio of Z. marina explained >12% and the contribution of Z. marina detritus to the sediment surface C-org pool explained >10% of the variation in the C-org stocks. The mean monetary value for the present carbon...

  3. Marina Tsvetaeva, Les Carnets. 1913-1939

    Directory of Open Access Journals (Sweden)

    Katia Vandenborre

    2009-10-01

    Full Text Available Entrevoir le quotidien de Marina Cvetaeva avant son éternité, approcher sa personne avant sa personnalité, tout en remontant aux sources impossibles de sa création, tels sont les défis de la publication de ses Carnets.Ces quinze carnets réunissent en un volume vingt-six ans de notes, esquisses poétiques, extraits de lettres, chroniques du quotidien, listes de courses, réflexions. Ils commencent en 1913, Tsvetaeva étant alors une jeune mère de 21 ans, traversent les années de dénuement et d’ex...

  4. Selection of milk-source Lactic acid bacteria producing antimicrobial peptides and cultivation for antimicrobial activity%产抗菌肽乳源乳酸菌的筛选及定向培养

    Institute of Scientific and Technical Information of China (English)

    乔彬; 高学军; 潘洪宝; 于微; 尹德云

    2012-01-01

    In order to obtain metabolism control methods for high expression of antimicrobial peptides of lactic acid bacteria.In this experiment, Lactobacillus delbrueckii subsp. Bulgaricus etc. seven kinds of lactic acid bacteria were isolated and identified and cultured for antimicrobial activities. Excluding the interference of organic acids and hydrogen peroxide, the high antibacterial activities of these lactic acid bacteria were selected. The fermentation supernatant of these two kinds of lactic acid bacteria lost antimicrobial activity in the presence of trypsin. The fermentation supernatant of Lactobacillus acidophilus and Lactobacillus casei had inhibitory spectrum against Staphylococcus aureus and E.coli. After the series of target cultivation , the antibacterial diameter of Lactobacillus acidophilus was (23.53±0.06)mm, while without the target cultivation Lactobacillus acidophilus antibacterial diameter was (11. 63±0.15)mm, the antibacterial activity rised by 102%. After target cultivation, antibacterial diameter of Lactobacillus casei was (21. 27±0.25)mm, while without target cultivation the antibacterial diameter of Lactobacillus casei was (12. 50±0.10)mm, antimicrobial activity rised by 70.2%.%为了获得乳酸菌高效表达抗菌肽的代谢调控方法,对德氏乳杆菌保加利亚亚种等7种乳酸菌进行了产抗菌肽能力的筛选和定向培养.筛选出具有较高抑菌活性的菌株嗜酸乳杆菌和干酪乳杆菌,它们产生的抑菌物质经排除酸、过氧化氢后,仍具有抑菌活性,然而经蛋白酶处理后其抑菌活性明显下降.结果表明,两种菌发酵上清液对金黄色葡萄球菌和大肠杆菌均有抑制作用.经一系列定向培养嗜酸乳杆菌抑菌直径达到(23.53±0.06)mm,与未经定向培养的抑菌直径(11.63±0.15)mm相比抑菌活性提高了102%;经定向培养的干酪乳杆菌抑菌直径达到(21.27±0.25)mm,与未经定向培养的抑菌直径(12.50±0.10)mm相比抑

  5. Research and Analysis of Cultivate Bacteria in Captive Gibbons Faeces in the Kunming Zoo%昆明动物园圈养长臂猿粪便可培养细菌分析

    Institute of Scientific and Technical Information of China (English)

    李莲; 马国强; 刘丽; 刘安荣; 师婧; 周杰珑; 王秀艳

    2016-01-01

    It took seven captive Gibbons of Kuming Zoo as the research object,adopted a combination of tradi-tional microbiological and molecular biological methods,isolated,identified and analyzed the cultivate bacteria of fresh feces.The results showed that nine strains could identify to spicies among the 15 isolated strains of bacteria, which were belonged to Bacillus methylotrophicus,Enterococcus hirae,Brevibacterium halotolerans and Shigella flex-neri 4 species,respectively.The other six strains could identify to genus,which were belonged to the genus Neisse-ria and Escherichia coli 2 genus,respectively.Which the brevibacterium halotolerans and Escherichia coli were the dominant bacteria.%以昆明动物园7只圈养长臂猿为研究对象,通过传统微生物检测和分子生物学方法相结合,对其新鲜粪便可培养细菌进行分离、鉴定与分析。结果表明:分离得到的15株细菌中,有9株细菌可鉴定到种,分别属于甲基营养型芽孢杆菌、海氏肠球菌、耐盐短杆菌和弗氏志贺菌4个种;有6株细菌可以鉴定到属,分别属于奈瑟菌属和大肠杆菌2个属;其中优势菌为耐盐短杆菌和大肠杆菌。

  6. Bioaccumulation of trace elements by Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    Kandasamy Kathiresan; Kandasamy Saravanakumar; Pandiyan Mullai

    2014-01-01

    Objective: To analyze the concentrations of 12 micro-nutrients (Al, B, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn) in different plant parts of Avicennia marina and its rhizosphere soil of the south east coast of India. Methods: The samples were acid digested, then analyzed by using inductively coupled plasma system (ICP-Optical Emission Spectrophotometer). Results: Levels of metals were found in the decreasing order: Cd>Co>Ni>Pb>B>Cr>Zn>Mg>Mn>Cu>Fe>Al. The soil held more levels of metals than plant parts, but within the permissible limits of concentration. Bark and root accumulated higher levels of trace elements in a magnitude of 10-80 folds than other plant parts. The overall bioaccumulation factor in the sampling sites of Vellar, Pichavaram and Cuddalore was 2.88, 1.42 0.47 respectively. Essential elements accumulate high in mature mangroves forest while non-essential elements accumulate high in the industrially polluted mangroves. Conclusions:The ratio between essential and non-essential elements was found higher in young mangrove forest than that in mature mangrove forest and polluted mangrove areas. Thus, the ratio of accumulation can be used as an index of the growth and pollution status of mangroves.

  7. Bioaccumulation of trace elements by Avicennia marina

    Directory of Open Access Journals (Sweden)

    Kandasamy Kathiresan

    2014-11-01

    Full Text Available Objective: To analyze the concentrations of 12 micro-nutrients (Al, B, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn in different plant parts of Avicennia marina and its rhizosphere soil of the south east coast of India. Methods: The samples were acid digested, then analyzed by using inductively coupled plasma system (ICP-Optical Emission Spectrophotometer. Results: Levels of metals were found in the decreasing order: Cd>Co>Ni>Pb>B >Cr>Zn>Mg>Mn>Cu>Fe>Al. The soil held more levels of metals than plant parts, but within the permissible limits of concentration. Bark and root accumulated higher levels of trace elements in a magnitude of 10-80 folds than other plant parts. The overall bioaccumulation factor in the sampling sites of Vellar, Pichavaram and Cuddalore was 2.88, 1.42 0.47 respectively. Essential elements accumulate high in mature mangroves forest while non-essential elements accumulate high in the industrially polluted mangroves. Conclusions: The ratio between essential and non-essential elements was found higher in young mangrove forest than that in mature mangrove forest and polluted mangrove areas. Thus, the ratio of accumulation can be used as an index of the growth and pollution status of mangroves.

  8. In vitro antibacterial activity and stability of Avicennia marina against urinary tract infection pathogens at different parameters.

    Science.gov (United States)

    Devi, A Sheela; Rajkumar, Johanna

    2013-10-01

    In this study midstream urine samples were collected from urinary tract infected patients to isolate and identify UTI causing bacterial pathogens by biochemical methods. The identified strains were two gram-positive and five gram-negative bacterium. Out of these we have selected one gram-negative (Staphylococcus aureus) and three gram-positive (Escherichia coli, Pseudomonas aeruginosa and Klebsiella pneumoniae) bacteria for current study. The antibacterial effect of aqueous, hexane, chloroform, ethyl acetate and methanol extracts of Avicennia marina against UTI pathogens were studied. Most effective three extracts of A. marina were treated with charcoal. Out of three extracts methanol was confirmed as tremendous to act against bacterial isolates and it was characterized at two different concentrations and compared with chemical based antibiotics. The stability and antimicrobial efficacy of the extract of A. marina in different parameters such as temperature, pH, enzyme, surfactant, organic solvent was determined. In summary, the extract showed an excellent stability and effectiveness to temperature 50 degrees C, pH 4, enzyme treatment using protease, surfactant (EDTA) and organic solvent (formaldehyde).

  9. Diversity of cultivable endophytic bacteria isolated from tobacco%烟草可培养内生细菌的分离及多样性分析

    Institute of Scientific and Technical Information of China (English)

    陈泽斌; 夏振远; 雷丽萍; 陈海如

    2011-01-01

    267 endophytic bacteria of tobacco were isolated from roots, stems and leaves by the method of grinding separation. A preliminary analysis was made on the diversity of the isolates by phenotypic characteristics and molecular classification methods based on partial 16S rDNA sequences, the analytical comparison was also made between them, 267 bacteria isolates were separated with 8 different phenotypic characteristics, and were grouped into 5 clusters and 56 subclusters at the level of 2.15 with numerical classified based on the unweighted pair group method with arithmetic averages algorithm, and they were clustered into 21 molecular groups based on partial 16S rDNA sequences. The results show that there are much more phenotypic types than molecular groups, phenotypic characteristics was not consistent with the results of molecular classification exactly. The result of sequence analysis of the 16S rDNA showed a 98%-99% homology with 21 species in the GenBank. The dominant bacterial groups of tobacco endophytic bacteria belong to Firmicutes, Bacillus genera.%采用稀释平板法,从健康烟草的根、茎、叶组织中分离到267株内生细菌.利用细菌茵落表征性状和16S rRNA序列对这些分离物进行了多样性分析.通过数值分析比较了8个菌落形态表征性状,以类平均连锁聚类法的方式进行聚类分析,在2.15的水平上可分成5个聚类群和56个亚群.16S rDNA序列系统发育分析表明267株分离物可分为21个类群.研究表明同-茵落形态类型的菌株在系统发育树中不一定聚为一类,菌落形态分类与分子生物学方法分类结果不完全一致.经克隆测序分析表明,这267株分离物分别与GenBank中6类细菌中的21个已知种相似性达到98%-99%.其中芽孢杆菌属(Bacillu.s)细菌是烟草可培养内生细菌的优势种群.

  10. Characterization of Carbofuran Degrading Bacteria Obtained from Potato Cultivated Soils with Different Pesticide Application Records / Caracterización de Bacterias Degradadoras de Carbofuran Obtenidas de Suelos Bajo Cultivo de Papa y con Diferente Histor

    Directory of Open Access Journals (Sweden)

    Castellanos Rozo José

    2013-08-01

    Full Text Available Abstract. Eighty-two bacterial isolates with potential Carbofurandegradation activity (Furadan®3SC were obtained from soilscultivated with the potato variety Unica (Solanum tuberosumin Silos, Norte de Santander (Colombia, with different recordsof pesticide application. The bacteria were selected for theirability to grow at 25 °C for 72 h in media containing 200 mgL-1 of analytical Carbofuran as the sole source of carbon and/or nitrogen. The results showed that ten isolates, 12% of those obtained, grew in the culture media. Eight of theses isolates were obtained from soils with a high pesticide exposure (eight years of application, and identified, by macroscopic, microscopic and biochemical characteristics, as Sphingomonas paucimobilis. The other two were obtained from soils with three years and one year of application and were identified as Pseudomonas aeruginosa and Yersinia pseudotuberculosis, respectively. Subsequently, these bacteria were tested for their ability of hydrolytic degradation of Carbofuran; the results show that the pesticide was degraded only by the isolates of Sphingomonas paucimobilis for 72 h. The results obtained in the in vitro tests show the bacterial metabolic capacity for the biodegradation of Carbofuran, highlighting the potential use of the bacteria for future field evaluation tests in places where residues of the pesticide may exist, as an alternative to control the impact that N-methyl carbamate pesticides have on the environment and human health. / Resumen. Ochenta y dos aislamientos bacterianos con actividad potencial de degradación de Carbofuran (Furadan®3SC, fueron obtenidos de suelos, cultivados con papa (Solanum tuberosum variedad Única, del municipio de Silos, Norte de Santander (Colombia con diferente historia de aplicación del plaguicida. Las bacterias fueron seleccionadas por su capacidad para crecer a 25 °C durante 72 h, en medios de cultivo conteniendo 200 mg L-1 de Carbofuran analítico como

  11. Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Holmer, Marianne

    2015-01-01

    Gaseous sulfide intrusion into seagrasses growing in sulfidic sediments causes little or no harm to the plant, indicating the presence of an unknown sulfide tolerance or detoxification mechanism. We assessed such mechanism in the seagrass Zostera marina in the laboratory and in the field with sca......Gaseous sulfide intrusion into seagrasses growing in sulfidic sediments causes little or no harm to the plant, indicating the presence of an unknown sulfide tolerance or detoxification mechanism. We assessed such mechanism in the seagrass Zostera marina in the laboratory and in the field...... with scanning electron microscopy coupled to energy dispersive X-ray spectroscopy, chromatographic and spectrophotometric methods, and stable isotope tracing coupled with a mass balance of sulfur compounds. We found that Z. marina detoxified gaseous sediment-derived sulfide through incorporation and that most...

  12. Tres grandes plataformas marinas Mar del Norte

    Directory of Open Access Journals (Sweden)

    Soulas, R.

    1978-03-01

    Full Text Available This article analyzes the different building stages of three large sea platforms. After studying the structure's main characteristics, preparing scale models and calculating ail the elements, platform construction was carried out in three stages: — Dry-dock construction of the hull base. — Installation in the water and finishing the structure. — Immersion and bridge installation. Finally, the necessary operations to move the platform to its definite location were carried out. The structures are formed by a parallelepiped hull of reinforced concrete, divided into compartments by means of vertical orthogonals panels on top of which 2 or 4 piles are placed to support the bridge.

    En este artículo se analizan las diversas etapas en la realización de tres grandes plataformas marinas. Después de un estudio de las características principales de la estructura, ensayos en modelo reducido y cálculo de todos los elementos, se procede a la construcción de las plataformas en tres fases: — Construcción en seco de la base del casco. — Colocación en el agua y acabado de la estructura. — Inmersión y colocación del puente. Por último, se realizan las operaciones necesarias para llevar la plataforma a su ubicación definitiva. Las estructuras están formadas por un casco paralelepipédico de hormigón armado, dividido en compartimientos mediante tabiques verticales ortogonales y sobre el que se han colocado 2 ó 4 pilas que soportan el puente.

  13. Antioxidant and antimicrobial activity of a mangrove plant Avicennia marina (Forsk. Pooja Moteriya, Ashish Dalsaniya, Sumitra Chanda*

    Directory of Open Access Journals (Sweden)

    Pooja Moteriya

    2015-09-01

    Full Text Available Objective: To evaluate the antioxidant and antimicrobial potential of different parts (leaf, stem and pneumatophore of a mangrove plant Avicennia marina (Forsk. Vierh (Avicenniaceae. Methods: The extraction was done by cold percolation method using solvents of hexane, ethyl acetate, acetone, methanol and water. Total phenol and flavonoid content were measured by Folin-Ciocalteu’s reagent and aluminium chloride colorimetric method respectively. The antioxidant activity was evaluated using antioxidant assays of 2,2-diphenyl-1-picrylhydrazyl free radical scavenging activity, superoxide radical scavenging assay, 2,2’-azino-bis-(3-ethyl benzothiazoline-6-sulfonic acid, ferric reducing antioxidant power and reducing capacity assessment. The antibacterial activity was done by agar well diffusion method against four Gram-positive, four Gram-negative bacteria and four fungi. Results: Different antioxidant assays showed different levels of activity in different parts and different solvent extracts. Overall, acetone extract of stem showed the best antioxidant activity. The Gram-positive bacteria were more susceptible than Gram-negative bacteria and fungi. Conclusions: The results indicated extract of Avicennia marina can be used as a promising source of natural antioxidant.

  14. Cobetia marina CICC10367渗透压冲击下羟基四氢嘧啶的合成及释放%Hydroxyectoine synthesis and release under osmotic shock in Cobetia marina CICC10367

    Institute of Scientific and Technical Information of China (English)

    郎亚军; 任亚男; 柏林; 张苓花

    2009-01-01

    [目的]筛选获得耐受渗透压冲击的羟基四氢嘧啶合成菌株,利用"细菌挤奶"工艺提高羟基四氢嘧啶的产率.[方法]从盐池中分离羟基四氢嘧啶合成菌株,并对其进行形态、生理生化及16s rDNA鉴定.考察了培养基及其Nacl浓度对羟基四氢嘧啶合成的影响,在优化的条件下利用"细菌挤奶"工艺制备羟基四氢嘧啶.[结果]筛选获得的一株羟基四氢嘧啶合成菌株,鉴定为Cobetia marina CICC10367(C.marina CICC10367).NaCl浓度为90 g/L的、谷氨酸单钠为唯一碳氮源的培养基有利于羟基四氢嘧啶合成,最高合成量为694.5 mg/L 6次渗透压冲击的细菌挤奶,羟基四氢嘧啶的总合成量4179.O mg/L,产率597.0 mg/L/d,羟基四氢嘧啶对底物的转化率为80.2 mg/g.[结论]筛选获得的菌株C.marina CICC10367在NaCl诱导下合成羟基四氢嘧啶,该菌株耐受渗透压冲击,利用细菌挤奶工艺显著地提高了该菌株羟基四氢嘧啶的产率和转化率.%[Objective]To obtain hydroxyectoine-producing strain with tolerance to osmotic shock and improve hydroxyectoine productivity by adopting "bacteria milking" process.[Methods]We isolated a strain from salt lake, and then carried out the identifications of morphology, physiological and biochemical characteristics of the strain. We also investigated the effects of the medium and its NaCl concentration on the hydroxyectoine synthesis of this strain. Under optimal condition, hydroxyectoine was produced by adopting "bacteria milking" process.[Results]A hydroxyectoine-producing strain was obtained and identified as Cobetia marina CICC10367 ( C. marina CICC10367) . It could enhance hydroxyeceoine synthesis when the medium adopting monosodium glutamate as the sole source of carbon and nitrogen at 90 g/L NaCl. The highest synthesized hydroxyectoine concentration was 694.5 mg/L in the above described medium. After the "bacteria milking" process of six osmotic shock, the total concentration of

  15. Marina Abramović on kohal / Bianka Marran

    Index Scriptorium Estoniae

    Marran, Bianka

    2010-01-01

    Jugoslaavia kunstniku Marina Abramovići performance'itest. Pikemalt tema teosest "The Artist is Present" New Yorgi Moodsa Kunsti Muuseumis 14. märtsist 31. maini 2010. Koostööst saksa fotograafi ja performance'ikunstniku Ulay'ga (kodanikunimi Frank Uwe Laysiepen)

  16. Characterization of a New Trioxilin and a Sulfoquinovosyl Diacylglycerol with Anti-Inflammatory Properties from the Dinoflagellate Oxyrrhis marina

    Science.gov (United States)

    Yoon, Eun Young; Yang, A. Reum; Park, Jaeyeon; Moon, Seung Joo; Jeong, Eun Ju; Rho, Jung-Rae

    2017-01-01

    Two new compounds—a trioxilin and a sulfoquinovosyl diacylglycerol (SQDG)—were isolated from the methanolic extract of the heterotrophic dinoflagellate Oxyrrhis marina cultivated by feeding on dried yeasts. The trioxilin was identified as (4Z,8E,13Z,16Z,19Z) -7(S),10(S),11(S)-trihydroxydocosapentaenoic acid (1), and the SQDG was identified as (2S)-1-O-hexadecanosy-2-O-docosahexaenoyl-3-O-(6-sulfo-α-d-quinovopyranosyl)-glycerol (2) by a combination of nuclear magnetic resonance (NMR) spectra, mass analyses, and chemical reactions. The two compounds were associated with docosahexaenoic acid, which is a major component of O. marina. The two isolated compounds showed significant nitric oxide inhibitory activity on lipopolysaccharide-induced RAW264.7 cells. Compound 2 showed no cytotoxicity against hepatocarcinoma (HepG2), neuroblastoma (Neuro-2a), and colon cancer (HCT-116) cells, while weak cytotoxicity was observed for compound 1 against Neuro-2a cells. PMID:28264430

  17. Characterization of a New Trioxilin and a Sulfoquinovosyl Diacylglycerol with Anti-Inflammatory Properties from the Dinoflagellate Oxyrrhis marina

    Directory of Open Access Journals (Sweden)

    Eun Young Yoon

    2017-02-01

    Full Text Available Two new compounds—a trioxilin and a sulfoquinovosyl diacylglycerol (SQDG—were isolated from the methanolic extract of the heterotrophic dinoflagellate Oxyrrhis marina cultivated by feeding on dried yeasts. The trioxilin was identified as (4Z,8E,13Z,16Z,19Z -7(S,10(S,11(S-trihydroxydocosapentaenoic acid (1, and the SQDG was identified as (2S-1-O-hexadecanosy-2-O-docosahexaenoyl-3-O-(6-sulfo-α-d-quinovopyranosyl-glycerol (2 by a combination of nuclear magnetic resonance (NMR spectra, mass analyses, and chemical reactions. The two compounds were associated with docosahexaenoic acid, which is a major component of O. marina. The two isolated compounds showed significant nitric oxide inhibitory activity on lipopolysaccharide-induced RAW264.7 cells. Compound 2 showed no cytotoxicity against hepatocarcinoma (HepG2, neuroblastoma (Neuro-2a, and colon cancer (HCT-116 cells, while weak cytotoxicity was observed for compound 1 against Neuro-2a cells.

  18. Cultivation of Marine Sponges.

    Science.gov (United States)

    Osinga; Tramper; Wijffels

    1999-11-01

    There is increasing interest in biotechnological production of marine sponge biomass owing to the discovery of many commercially important secondary metabolites in this group of animals. In this article, different approaches to producing sponge biomass are reviewed, and several factors that possibly influence culture success are evaluated. In situ sponge aquacultures, based on old methods for producing commercial bath sponges, are still the easiest and least expensive way to obtain sponge biomass in bulk. However, success of cultivation with this method strongly depends on the unpredictable and often suboptimal natural environment. Hence, a better-defined production system would be desirable. Some progress has been made with culturing sponges in semicontrolled systems, but these still use unfiltered natural seawater. Cultivation of sponges under completely controlled conditions has remained a problem. When designing an in vitro cultivation method, it is important to determine both qualitatively and quantitatively the nutritional demands of the species that is to be cultured. An adequate supply of food seems to be the key to successful sponge culture. Recently, some progress has been made with sponge cell cultures. The advantage of cell cultures is that they are completely controlled and can easily be manipulated for optimal production of the target metabolites. However, this technique is still in its infancy: a continuous cell line has yet to be established. Axenic cultures of sponge aggregates (primmorphs) may provide an alternative to cell culture. Some sponge metabolites are, in fact, produced by endosymbiotic bacteria or algae that live in the sponge tissue. Only a few of these endosymbionts have been cultivated so far. The biotechnology for the production of sponge metabolites needs further development. Research efforts should be continued to enable commercial exploitation of this valuable natural resource in the near future.

  19. Modelling the growth kinetics of Kocuria marina DAGII as a function of single and binary substrate during batch production of β-Cryptoxanthin.

    Science.gov (United States)

    Mitra, Ruchira; Chaudhuri, Surabhi; Dutta, Debjani

    2017-01-01

    In the present investigation, growth kinetics of Kocuria marina DAGII during batch production of β-Cryptoxanthin (β-CRX) was studied by considering the effect of glucose and maltose as a single and binary substrate. The importance of mixed substrate over single substrate has been emphasised in the present study. Different mathematical models namely, the Logistic model for cell growth, the Logistic mass balance equation for substrate consumption and the Luedeking-Piret model for β-CRX production were successfully implemented. Model-based analyses for the single substrate experiments suggested that the concentrations of glucose and maltose higher than 7.5 and 10.0 g/L, respectively, inhibited the growth and β-CRX production by K. marina DAGII. The Han and Levenspiel model and the Luong product inhibition model accurately described the cell growth in glucose and maltose substrate systems with a R (2) value of 0.9989 and 0.9998, respectively. The effect of glucose and maltose as binary substrate was further investigated. The binary substrate kinetics was well described using the sum-kinetics with interaction parameters model. The results of production kinetics revealed that the presence of binary substrate in the cultivation medium increased the biomass and β-CRX yield significantly. This study is a first time detailed investigation on kinetic behaviours of K. marina DAGII during β-CRX production. The parameters obtained in the study might be helpful for developing strategies for commercial production of β-CRX by K. marina DAGII.

  20. 山苍子(Litsea cubeba)可培养内生细菌的多样性%Phylogenetic diversity of cultivable endophytic bacteria isolated from Litsea cubeba

    Institute of Scientific and Technical Information of China (English)

    游玲; 魏琴; 郭华; 张云

    2012-01-01

    【目的】研究山苍子可培养内生细菌的多样性。【方法】利用添加植物组织浸提液的营养琼脂培养基分离山苍子根、茎、叶及果实中的可培养内生细菌,采用16SrDNA序列鉴定法对分离获得的山苍子可培养内生细菌进行鉴定。同一组织内,对16SrDNA序列及形态完全一样的菌株合并冗余,用Clustalx对分离得到的菌株16SrD-NA进行排序,构建Neighbor-Joining系统进化树,并计算Jaccard指数和多样性指数。【结果】共分离得到52株山苍子可培养内生细菌(根23株、茎8株、叶7株、果实14株),分属于芽孢杆菌属(Bacillus)、类芽孢杆菌属(Paenibacillus)、Paenochrobactrum、普罗威登斯菌属(Providencia)、假单胞菌属(Pseudomonas)、鞘氨醇单胞菌属(Sphingomonas)和Ly-sinibacillus共7个属的16个种,其中芽孢杆菌属细菌40株,与Bacillus tequilensis、解淀粉芽孢杆菌(Bacillus amylolique-faciens)、苏云金芽孢杆菌(Bacillus thuringiensis)3个种最接近的内生细菌占分离细菌株数的69.2%;根及果实中的可培养内生细菌数量及种属均最丰富,其多样性指数高于茎、叶;叶与果实可培养内生细菌的Jaccard指数最高,达0.56,其余均较低。【结论】山苍子可培养内生细菌在植株内部的分布既有种属特异性,又有器官相似性。%【Objective】 The study was done in order to study the diversity of endophytic bacteria in Litsea cubeba.【Method】 We took nutrient agar medium amplified by the water extract of Litsea cubeba for isolation and cultivation,and the endophytic bacteria were identified by their 16S rDNA partial sequences.Redundant isolates were fused in a certain tissues through partial 16S rRNA gene sequences and colony morphology,then 16S rDNA sequences of these strains were clustered by Clustalx,phylogenetic tree was constructed by using Neighbor-Joining method,Jaccard index and biodiversity index were calculated

  1. A New Acylated Iridoid Glucoside from Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    Yan FENG; Xiao Ming LI; Xiao Juan DUAN; Bin Gui WANG

    2006-01-01

    A new acylated iridoid glucoside, namely, 2'-O-(5-phenyl-2E, 4E-pentadienoyl)-mussaenosidic acid, was isolated from the aerial parts of the mangrove plant Avicennia marina.The structure of the new compound was established on the basis of various NMR spectroscopic analyses, including 2D NMR techniques (1H-1H COSY, HMQC, and HMBC) and HR-FAB-MS.This compound displayed moderate antioxidant activity.

  2. Expression and characterization analysis of type 2 metallothionein from grey mangrove species (Avicennia marina) in response to metal stress

    Energy Technology Data Exchange (ETDEWEB)

    Huang Guoyong, E-mail: huang_gyh@sina.com [Key Laboratory of Tropical Marine Environmental Dynamics, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301 (China); State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640 (China); Wang Youshao [Key Laboratory of Tropical Marine Environmental Dynamics, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301 (China)

    2010-08-01

    Metallothioneins (MTs) are a family of low-molecular-weight cysteine-rich proteins and are thought to play possible roles in metal metabolism or detoxification. To evaluate the roles of metallothioneins in metal homeostasis or tolerance in Avicennia marina, a real-time quantitative PCR protocol was developed to directly evaluate the expression of AmMT2 mRNA, when A. marina seedlings were exposed to different concentrations of zinc (Zn), copper (Cu) or lead (Pb) for 3 and 7 d. Real-time quantitative PCR results indicated that the regulation of AmMT2 mRNA expression by Zn, Cu and Pb was strongly dependent on concentration and time of exposure. A significant increase in the transcripts of AmMT2 gene was also found in response to Zn, Cu and Pb, at least under some experimental conditions. When AmMT2 was overexpressed in Escherichia coli BL21 as a carboxy-terminal extension of glutathione-S-transferase (GST), the transgenic bacteria showed an increased tolerance to Zn, Cu, Pb and Cd exposure as compared to control strains. Moreover, GST-AmMT2 was purified from E. coli cells grown in the presence of 400 {mu}M Zn, Cu, Pb or Cd. The purified GST-AmMT2 fusion protein could bind higher levels of all four metals than GST alone. Taken together, these data support the hypothesis that AmMT2 may be involved in processes of metal homeostasis or tolerance in A. marina.

  3. 海岸带沉积物环境中甲烷代谢菌的富集培养及混合菌群分析%Enrichment cultivation of methane metabolic bacteria in the environment of sediments from the coastal zones and analysis of mixed bacteria communities

    Institute of Scientific and Technical Information of China (English)

    于丽波; 姜丽晶; 汤熙翔

    2011-01-01

    结合Hungate无氧分离技术,对海岸带沉积物中甲烷代谢菌进行了富集培养,分别为珠江口的甲烷产生菌和九龙江口的甲烷氧化菌及其他甲基氧化菌.其研究结果表明:在珠江口淇澳岛海岸带沉积物中,甲烷八叠球菌属(Methanosarcina)为优势菌株,分布于沉积物的上、中、下3个层位,并发现了部分序列与不可培养的泉古菌门( Crenarchaeota)的杂色泉古菌(miscellaneous crenarchaeotic group,MCG)的相似度为90% ~99%.在九龙江口的海岸带沉积物环境中,噬甲基菌属(Methylophaga)为优势菌群,在富集产物菌群多样性中占60% ~99%;还有一些相似度较低(为95% ~97%)的菌群,为潜在的新种.%Methane ( CH4 ) is one of the main " greenhouse gases" responsible for global wanning. Most methane in the atmosphere is the result of the interaction between Methanogens and Methanotrophs. Therefore, it is of great significance for both energy and environment to research Methanogens and Methanotrophs. In this study, enrichment and biodiversity analyses were conducted on bacteria related to methane metabolism from the coastal zone sediments. The Methanogens from Qi' ao Island in the Pearl River Estuary, China and the Methanotrophs and other methyl-oxidizing bacteria from the Jiulongjiang River Estuary, China were cultivated. The main experimental methods included the Hungate anaerobic technique for enrichment and isolation as well as a molecular biological technique for biodiversity analysis was made on the enrichment products. The current study indicated that Methanosarcina was the predominant genus identified throughout the three layers of sediments found in the seashore area of Qi' ao Island in Pearl River Estuary. These bacteria could utilize propionate and lactate as substrates in addition to utilizing methanol, H2/CO2, mono-methylamine ( MM A) , double-methyla-mine( DMA) , trimethylamine( TMA) , as previously reported. The uncultured

  4. IDENTIFICATION OF BACTERIA IN LATEX PAINTS

    Directory of Open Access Journals (Sweden)

    Rojas, J.

    2008-01-01

    Full Text Available The bacteria are prokaryote organisms with a high capacity to colonize many types of habits. This research was developed with the object to identify extremophiles bacteria presents in latex paint. The bacteria were cultivated in culture mediums TSA, Blood Agar, Mc Conkey and finally the biochemical proof API-NF® for bacteria's isolation and identification, respectively. Characterization showed bacterial profile of Pasteurella sp. Hypothesis that could be found extremophiles bacteria in latex paint were demonstrated.

  5. Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments.

    Science.gov (United States)

    Riedel, Thomas; Fiebig, Anne; Han, James; Huntemann, Marcel; Spring, Stefan; Petersen, Jörn; Ivanova, Natalia N; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Kyrpides, Nikos C; Klenk, Hans-Peter

    2014-06-15

    Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34(T) together with the genome sequence and annotation of strain DSM 24838(T) and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838(T) was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG).

  6. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments

    Science.gov (United States)

    Riedel, Thomas; Fiebig, Anne; Han, James; Huntemann, Marcel; Spring, Stefan; Petersen, Jörn; Ivanova, Natalia N.; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Kyrpides, Nikos C.; Klenk, Hans-Peter

    2014-01-01

    Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34T together with the genome sequence and annotation of strain DSM 24838T and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838T was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG). PMID:25197468

  7. Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand.

    Science.gov (United States)

    Hosoya, Shoichi; Arunpairojana, Vullapa; Suwannachart, Chatrudee; Kanjana-Opas, Akkharawit; Yokota, Akira

    2006-12-01

    Three strains of gliding bacteria, 24(T), 62 and 71, isolated from a marine sponge and algae from the southern coastline of Thailand, were studied using a polyphasic approach to clarify their taxonomic positions. A phylogenetic analysis based on 16S rRNA gene sequences showed that the three isolates formed a distinct lineage within the family 'Saprospiraceae' of the phylum Bacteroidetes and were related to members of the genus Saprospira. The G+C contents of the isolates were in the range 38-39 mol%. The major respiratory quinone was MK-7. The predominant cellular fatty acids were 20 : 4omega6c (arachidonic acid), 16 : 0 and iso-17 : 0. On the basis of morphological, physiological and chemotaxonomic characteristics, together with DNA-DNA hybridization data and 16S rRNA gene sequences, the isolates represent a novel species of a novel genus, for which the name Aureispira marina gen. nov., sp. nov. is proposed. The type strain of Aureispira marina is 24(T) (=IAM 15389(T)=TISTR 1719(T)).

  8. Effects of salinity and nutrient load and their interaction on Zostera marina

    NARCIS (Netherlands)

    Van Katwijk, M.; Schmitz, G.; Gasseling, A.P.; Van Avesaath, P.H.

    1999-01-01

    Generally, seagrass Zostera marina L. distribution in the Wadden Sea and south-west Netherlands is Limited to waters with low to moderate nutrient concentrations. However, it is known that Z. marina also occurs at high nutrient concentrations when growing in low salinity environments. In this study,

  9. 76 FR 37650 - Safety Zone; 4th of July Festival Berkeley Marina Fireworks Display Berkeley, CA

    Science.gov (United States)

    2011-06-28

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; 4th of July Festival Berkeley Marina Fireworks Display Berkeley, CA AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast... Berkeley Pier, Berkeley, CA in support of the 4th of July Festival Berkeley Marina Fireworks...

  10. 78 FR 29022 - Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA

    Science.gov (United States)

    2013-05-17

    ... SECURITY Coast Guard 33 CFR Part 165 Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA... enforce the safety zone for the Berkeley Marina Fourth of July Fireworks display in the Captain of the... Berkeley Pier in approximate position 37 51'40'' N, 122 19'19'' W (NAD 83) from 9:30 p.m. until 10:15...

  11. The Phenomenon of the Marina Development to Support the European Model of Economic Development

    Directory of Open Access Journals (Sweden)

    Joanna Kizielewicz

    2013-09-01

    Full Text Available The development of marinas on the seas, rivers, lakes and canals of Europe occurs in two different forms: (1 as a private investment project, and (2 as an urban municipal investment. Both forms of investment and development of marinas satisfy the criteria of entrepreneurship, which is important for each global and European economy. The purpose of this research is explanation of the possibilities for development of marinas and their immediate and distant destination which supports the development of the local economy. The scientific and research achievements were applied and, for the purpose of transparency, a case study showing several marinas and the examples of two basic models of development are presented. Structurally, this research consists of two parts, namely (1 a theoretical part, where a definition of nautical tourism and its classification are presented and (2 the development of specific indicators of marinas in Europe are explored.

  12. Blue carbon stocks in Baltic Sea eelgrass (Zostera marina) meadows

    Science.gov (United States)

    Röhr, Maria Emilia; Boström, Christoffer; Canal-Vergés, Paula; Holmer, Marianne

    2016-11-01

    Although seagrasses cover only a minor fraction of the ocean seafloor, their carbon sink capacity accounts for nearly one-fifth of the total oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. We sampled 10 eelgrass (Zostera marina) meadows in Finland and 10 in Denmark to explore seagrass carbon stocks (Corg stock) and carbon accumulation rates (Corg accumulation) in the Baltic Sea area. The study sites represent a gradient from sheltered to exposed locations in both regions to reflect expected minimum and maximum stocks and accumulation. The Corg stock integrated over the top 25 cm of the sediment averaged 627 g C m-2 in Finland, while in Denmark the average Corg stock was over 6 times higher (4324 g C m-2). A conservative estimate of the total organic carbon pool in the regions ranged between 6.98 and 44.9 t C ha-1. Our results suggest that the Finnish eelgrass meadows are minor carbon sinks compared to the Danish meadows, and that majority of the Corg produced in the Finnish meadows is exported. Our analysis further showed that > 40 % of the variation in the Corg stocks was explained by sediment characteristics, i.e. dry density, porosity and silt content. In addition, our analysis show that the root : shoot ratio of Z. marina explained > 12 % and the contribution of Z. marina detritus to the sediment surface Corg pool explained > 10 % of the variation in the Corg stocks. The mean monetary value for the present carbon storage and carbon sink capacity of eelgrass meadows in Finland and Denmark, were 281 and 1809 EUR ha-1, respectively. For a more comprehensive picture of seagrass carbon storage capacity, we conclude that future blue carbon studies should, in a more integrative way, investigate the interactions between sediment biogeochemistry, seascape structure, plant species architecture and the hydrodynamic regime.

  13. Eelgrass (Zostera marina) food web structure in different environmental settings

    DEFF Research Database (Denmark)

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne;

    2016-01-01

    his study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions...... in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and nar- rower leaves, and higher above to below ground biomass ratio compared to the less nutri- ent-enriched and more exposed site. The faunal community...

  14. Exposiciones. Esculturas de Marina Núñez del Prado

    Directory of Open Access Journals (Sweden)

    Eduardo Mendoza Varela

    1961-05-01

    Full Text Available Hace varios años Gabriela Mistral en unas cuantas palabras que han quedado también entre las mejores páginas, expresó lo que significaba la aparición de Marina Núñez del Prado en el arte de Latinoamérica. En efecto, no era solamente profética la voz de la gran poetisa chilena al señalar en la artista boliviana a una de las figuras más nítidas y altas de la plástica continental.

  15. Immune response varies with rate of dispersal in invasive cane toads (Rhinella marina.

    Directory of Open Access Journals (Sweden)

    Gregory P Brown

    Full Text Available What level of immunocompetence should an animal maintain while undertaking long-distance dispersal? Immune function (surveillance and response might be down-regulated during prolonged physical exertion due to energy depletion, and/or to avoid autoimmune reactions arising from damaged tissue. On the other hand, heightened immune vigilance might be favored if the organism encounters novel pathogens as it enters novel environments. We assessed the links between immune defense and long-distance movement in a population of invasive cane toads (Rhinella marina in Australia. Toads were radio-tracked for seven days to measure their activity levels and were then captured and subjected to a suite of immune assays. Toads that moved further showed decreased bacteria-killing ability in their plasma and decreased phagocytic activity in their whole blood, but a heightened skin-swelling response to phytohemagglutinin. Baseline and post-stress corticosterone levels were unrelated to distance moved. Thus, long-distance movement in cane toads is associated with a dampened response in some systems and enhanced response in another. This pattern suggests that sustained activity is accompanied by trade-offs among immune components rather than an overall down or up-regulation. The finding that high mobility is accompanied by modification of the immune system has important implications for animal invasions.

  16. Actividad antibacteriana y antifúngica de extractos de algas marinas venezolanas

    Directory of Open Access Journals (Sweden)

    Nurby Ríos

    2011-07-01

    Full Text Available En este trabajo se evaluaron las propiedades bioactivas antibacterianas y antimicóticas de 33 extractos (etanol, diclorometano, hexano obtenidos de 11 especies de algas marinas recolectadas en las localidades de San Juan de Los Cayos y Chichiriviche, Estado Falcón, Venezuela. La actividad antibiótica y antimicótica de los extractos se evaluó mediante la aparición de halos de inhibición contra bacterias Gram positivas (Staphylococ- cus aureus, Gram negativas (Pseudomona aeruginosa, Klebsiella pneumoniae, Escherichia coli y el hongo Candida albicans. De los 33 extractos ensayados sólo 17 presentaron actividad antibacteriana (5 con etanol, 6 con diclorometano y 6 con hexano, resultando activos 14 frente a las especies Gram(- y 4 contra la especie Gram(+. Las especies algales que mostraron actividad antibacteriana fueron: Acanthophora sp., Bryothamnion triquetrum, Gracilaria sp., Gelidium sp., Caulerpa mexicana, Caulerpa sp., Caulerpa spp., Halimeda incras- sata, Ulva sp., Codium decorticatum, Sargassum sp. Ninguno de los extractos de algas ensayados presentó actividad antimicótica sobre Cándida albicans. Los resultados obtenidos permiten concluir que las algas de la costa occidental de Venezuela, presentan compuestos bioactivos con actividad antibacteriana.

  17. Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Holmer, Marianne; Weckwerth, Wolfram

    2014-01-01

    Environmental metabolomics has become interesting in marine ecological studies. One example is the revealing of new insights in stress response of Zostera marina. This is essential to understand how, at which level and to what extend aquatic plants adapt, tolerate and react to environmental...... stressors. We exposed Z. marina to water column anoxia and assessed the diurnal metabolomic response by GC-TOF-MS based metabolomics identifying 109 known and 217 unknown metabolites. During day time photosynthetic oxygen production prevents severe effects of anoxia on the metabolome (complete set of small...... the applicability of metabolomics to assess environmental stress responses of Zostera marina....

  18. Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Fragner, Lena; Holmer, Marianne

    2015-01-01

    We investigated the response, adaptation and tolerance mechanisms of the temperate seagrass Zostera marina to water column anoxia. We exposed Z. marina to a diurnal light/dark cycle under anoxia and assessed the metabolic response by measuring the metabolome with gas chromatography coupled to mass...... shunt as such mitigation mechanisms that alleviate pyruvate levels and lead to carbon and nitrogen storage during anoxia. This work demonstrates the applicability of metabolomics to assess low oxygen stress responses of Z. marina and allows us to propose an anoxia recovery model....

  19. Rubrivirga marina gen. nov., sp. nov., a member of the family Rhodothermaceae isolated from deep seawater.

    Science.gov (United States)

    Park, Sanghwa; Song, Jaeho; Yoshizawa, Susumu; Choi, Ahyoung; Cho, Jang-Cheon; Kogure, Kazuhiro

    2013-06-01

    Two aerobic, Gram-stain-negative, pale-red-pigmented and rod-shaped bacterial strains, designated SAORIC-26 and SAORIC-28(T), were isolated from seawater (3000 m depth) from the Pacific Ocean. Phylogenetic analysis based on their 16S rRNA gene sequences revealed that the novel isolates could be affiliated with the family Rhodothermaceae of the class Cytophagia. Strains SAORIC-26 and SAORIC-28(T) shared 99.7% pairwise sequence similarity with each other and showed less than 92.6% similarity with other cultivated members of the class Cytophagia. The strains were found to be non-motile, oxidase-positive, catalase-negative and able to hydrolyse gelatin and aesculin. The DNA G+C contents were determined to be 64.8-65.8 mol% and MK-7 was the predominant menaquinone. Summed feature 9 (iso-C17:1ω9c and/or C16:0 10-methyl), summed feature 3 (C16:1ω6c and/or C16:1ω7c) and iso-C15:0 were found to be the major cellular fatty acids. On the basis of this taxonomic study using a polyphasic approach, it was concluded that strains SAORIC-26 and SAORIC-28(T) represent a novel species of a new genus in the family Rhodothermaceae, for which the name Rubrivirga marina gen. nov., sp. nov. is proposed. The type strain of the type species of is SAORIC-28(T) (=KCTC 23867(T)=NBRC 108816(T)). An additional strain of the species is SAORIC-26.

  20. Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm.

    Science.gov (United States)

    Foesel, Bärbel U; Gieseke, Armin; Schwermer, Carsten; Stief, Peter; Koch, Liat; Cytryn, Eddie; de la Torré, José R; van Rijn, Jaap; Minz, Dror; Drake, Harold L; Schramm, Andreas

    2008-02-01

    Zero-discharge marine aquaculture systems are an environmentally friendly alternative to conventional aquaculture. In these systems, water is purified and recycled via microbial biofilters. Here, quantitative data on nitrifier community structure of a trickling filter biofilm associated with a recirculating marine aquaculture system are presented. Repeated rounds of the full-cycle rRNA approach were necessary to optimize DNA extraction and the probe set for FISH to obtain a reliable and comprehensive picture of the ammonia-oxidizing community. Analysis of the ammonia monooxygenase gene (amoA) confirmed the results. The most abundant ammonia-oxidizing bacteria (AOB) were members of the Nitrosomonas sp. Nm143-lineage (6.7% of the bacterial biovolume), followed by Nitrosomonas marina-like AOB (2.2% of the bacterial biovolume). Both were outnumbered by nitrite-oxidizing bacteria of the Nitrospira marina-lineage (15.7% of the bacterial biovolume). Although more than eight other nitrifying populations were detected, including Crenarchaeota closely related to the ammonia-oxidizer 'Nitrosopumilus maritimus', their collective abundance was below 1% of the total biofilm volume; their contribution to nitrification in the biofilter is therefore likely to be negligible.

  1. Classification of cultivated plants.

    NARCIS (Netherlands)

    Brandenburg, W.A.

    1986-01-01

    Agricultural practice demands principles for classification, starting from the basal entity in cultivated plants: the cultivar. In establishing biosystematic relationships between wild, weedy and cultivated plants, the species concept needs re-examination. Combining of botanic classification, based

  2. Population specific salinity tolerance in eelgrass (Zostera marina)

    DEFF Research Database (Denmark)

    Salo, Tiina Elina; Pedersen, Morten Foldager; Boström, Christoffer

    2014-01-01

    Salinity is one of the main factors impacting distribution of marine plants and sub-optimal salinities may result in increased resource use and decreased production.We studied the performance and salinity tolerance of eelgrass (Zostera marina L.) originating from two regions with different ambient...... salinities: a low saline (salinity 6) and a high saline (salinity 20) population. Plants fromboth populationswere exposed to a series of fixed salinities (2, 4, 6, 9, 12.5, 15, 20 and 25) for 5 weeks. Both plant origin and salinity affected plant performance significantly. Plant production decreasedwith...... decreasing salinity in both populations,while mortality increased in lowsalinity only in plants originating from the high saline population. The better performance of the low saline population in the lowest salinities indicates a horizontal shift in salinity tolerance among populationswith different origin...

  3. Marina Caffiero (Hg.: Rubare le anime. Roma: Viella 2008

    Directory of Open Access Journals (Sweden)

    Rita Unfer Lukoschik

    2009-07-01

    Full Text Available In den Akten des päpstlichen Staatsarchivs und der römischen jüdischen Gemeinde finden sich zeitgenössische Zeugnisse für die im päpstlichen Rom vom 16. bis zum 19. Jahrhundert nicht seltene Zwangskonvertierung jüdischer Mädchen und Frauen zum Katholizismus. Eines der wertvollsten Dokumente dieser Konversionspraxis liegt nunmehr in einer kommentierten Neuedition vor: das Tagebuch der 1749 sich erfolgreich der versuchten Zwangskonvertierung widersetzenden 18-jährigen Anna del Monte. In ihrer Einleitung ordnet die Herausgeberin Marina Caffiero dieses außergewöhliche Einzelschicksal in die zeitgleich und parallel laufenden Assimilations- und Emanzipationsprozesse ein, die sich in der mit aufklärerischem Gedankengut ‚infizierten‘ jüdischen Oberschicht Roms im 18. Jahrhundert abzeichneten.Contemporary reports on the forced conversion of Jewish girls and woman to Catholicism, not a rare occurrence in papal Rome from the 16th to the 19th centuries, can be found in the files of the official papal archive and the Roman Jewish community. One of the most valuable documents of this conversion practice has now been published in a new annotation edition: The diary of 18-year-old Anna del Monte, who was able to successfully resist the attempted forced conversion in 1749. In her introduction the editor Marina Caffiero places this extraordinary individual fate within the concurrent and parallel processes of assimilation and emancipation. These emerge in 18th century Rome’s Jewish upper class, which was “infected” with Enlightenment ideas.

  4. Baltoscandali avavad vigurmarss ja Schubert / Marina Steinmo ; interv. Eva Kübar

    Index Scriptorium Estoniae

    Steinmo, Marina

    2008-01-01

    Baltoscandali teatrifestivalil esineva Eesti päritolu Rootsi tantsija ja koreograafi Charlotte Engelkesi klassikalisel muusikal põhinevatest lavastustest "Forellen and Me" ja "Miss Very Wagner" (dramaturg, teksti ja etenduse kontseptsiooni autor on Marina Steinmo)

  5. Eelgrass (Zostera marina) Microsatellite DNA Data; Pacific Coast of North America, 2000-2009

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha...

  6. Iseseisvuse lubatavusest : Okasana Titova "Hamletis" ja Marina Kesleri "Libahundis" RO Estonias / Nele Suisalu

    Index Scriptorium Estoniae

    Suisalu, Nele

    2008-01-01

    Tantsuetendused "Hamlet" - lavastaja ja koreograaf Oksana Titova, muusika autor ja esitaja Taavi Kerkmäe ning "Libahunt" - lavastaja Marina Kesler, Lepo Sumera, Raimo Kangro, Arvo Pärdi ja Lydia Austeri muusikale. (2007. aasta 2. novembri etendusest)

  7. Assessment of Marinas in the Mediterranean and the Position of Turkey

    Directory of Open Access Journals (Sweden)

    Evrim Pinar Genc

    2006-05-01

    Full Text Available The most important organizations for developing and advertisingthe yacht tourism in a country are the marinas.Yachting tourism, being a part of maritime sector tends to playa part in the tourist activities and provides important resourcesfor the general economy.In this study, the developments in yachting tourism are aplainedby considering the cu"ent status of the marinas in theMedite"anean countries. Basic characteristics of different marinasof the Medite"anean countries will be discussed and alsostatistical figures will be given. The yachting routes and the potentialof Turkey will be analyzed by emphasizing operational,infrastructural and service characteristics. The factors thatshould be taken into consideration and the methods used formarina marketing will be explained. By considering strengths,weaknesses, opportunities and threats, a SWOT analysis will bemade for Turkey marinas. Suggestions will be given fur furtherdevelopment of marina management in Turkey.

  8. 77 FR 37604 - Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA

    Science.gov (United States)

    2012-06-22

    ... SECURITY Coast Guard 33 CFR Part 165 Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA... enforce the safety zone for the Berkeley Marina Fourth of July Fireworks display in the Captain of the... Berkeley Pier in position 37 51'40'' N, 122 19'19'' W (NAD 83) from 9:30 p.m. until 10:15 p.m. on July...

  9. Effects of used lubricating oil on two mangroves Aegiceras corniculatum and Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    An outdoor experiment was set up to investigate the effects of used lubricating oil (5 L/m2) on Aegiceras corniculatum Blanco. and Avicennia marina (Forsk) Vierh., two salt-excreting mangroves. A. marina was more sensitive to used lubricating oil than A. corniculatum and canopy-oiling resulted in more direct physical damage and stronger lethal effects than base-oiling. When treated with canopy-oiling, half of A. corniculatum plants survived for the whole treatment time (90 d); but, for A. marina, high mortality (83%) resulted from canopy-oiling within 3 weeks and no plants survived for 80 d. Base-oiling had no lethal effects on A. corniculatum plants even at the termination of this experiment, but 83% of A. marina plants died 80 d after treatment. Forty days after canopy-oiling, 93% of A. corniculatum leaves fell and no live leaves remained on A. marina plants. By the end of the experiment, base-oiling treatment resulted in about 45% of A. corniculatum leaves falling, while all A. marina leaves and buds were burned to die. Lubricating oil resulted in physiological damage to A. corniculatum leaves, including decreases in chlorophyll and carotenoid contents, nitrate reductase, peroxidase and superoxide dismutase activities, and increases in malonaldehyde contents. For both species, oil pollution significantly reduced leaf, root, and total biomass, but did not significantly affect stem biomass. Oil pollution resulted in damage to the xylem vessels of fine roots but not to those of mediate roots.

  10. Complete genome of Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae

    Science.gov (United States)

    Tang, Xianghai; Xu, Kuipeng; Han, Xiaojuan; Mo, Zhaolan; Mao, Yunxiang

    2016-09-01

    Cobetia marina is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of C. marina and the phylogeny of the family Halomonadaceae, we sequenced the entire genome of C. marina JCM 21022T using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences, 72 tRNA genes, and 21 rRNA genes. The C. marina JCM 21022T genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant diff erences between C. marina JCM 21022T and Cobetia amphilecti KMM 296 (formerly named C. marina KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these diff erences, pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested, including Chromohalobacter, Halomonas, Cobetia, Kushneria, Zymobacter, and Halotalea.

  11. Helkesimastix marina n. sp. (Cercozoa: Sainouroidea superfam. n.) a gliding zooflagellate of novel ultrastructure and unusual ciliary behaviour.

    Science.gov (United States)

    Cavalier-Smith, Thomas; Lewis, Rhodri; Chao, Ema E; Oates, Brian; Bass, David

    2009-08-01

    Unlike Helkesimastix faecicola and H. major, Helkesimastix marina is marine, ingests bacteria, is probably also a cannibal, and differs in cell cycle ciliary behaviour. Daughter kinetids have mirror symmetry; pre-division cilia beat asymmetrically. We sequenced its 18S rDNA and studied its ultrastructure to clarify its taxonomy. Helkesimastix (Helkesimastigidae fam. n.) differs unexpectedly radically from cercomonads, lacking their complex microtubular ciliary roots, grouping not with them but with Sainouridae within Pansomonadida. Longitudinal cortical microtubules emanate from a dense apical centrosomal plate, where a striated rhizoplast attaches the nucleus, and two very short subparallel centrioles attach by dense fibres. The marginally more posterior centriole, attached to the centrosomal plate by a dense forked fibre, bears the long 9+2 gliding posterior cilium and a microtubular root; the left-side, nucleus-attached, left centriole bears an immotile ciliary stump with abnormal axoneme of nine disorganized mainly singlet microtubules, unlike the sainourid anterior papilla. Both transitional regions have a proximal lattice, the posterior centriole with slender hub. Sainouroidea superfam. n. (Sainouridae; Helkesimastigidae) have homologous cytoskeletal geometry. Dorsal Golgi dictyosome and posterior microbody are attached to the nuclear envelope, which has slender micro-invaginations and probably a cortical lattice. Bacteria are digested posteriorly in association with numerous mitochondria with flat cristae.

  12. Ecosystem Services of Avicennia marina in the Red Sea

    KAUST Repository

    Almahasheer, Hanan

    2016-12-01

    The Red Sea is an arid environment, without riverine inputs, oligotrophic waters and extreme temperature and salinity. Avicennia marina is the dominant vegetation in the shores of the Red Sea. However, little is known about their distribution, dynamics, and services. Therefore, the aim of this Ph.D. was to obtain the basic information needed to evaluate their role in the coastal ecosystems and quantify their services. With that objective we 1) estimated the past and present distribution of mangroves in the Red Sea, 2) investigated the growth, leave production and floration 3) examined the growth limiting factors 4) measured the nutrients and heavy metal dynamics in the leaves and 5) estimated carbon sequestration. We found an increase of about 12% in the last 41 years, which contrasts with global trends of decrease. The extreme conditions in the Red Sea contributed to limit their growth resulting in stunted trees. Hence, we surveyed Central Red Sea mangroves to estimate their node production with an average of 9.59 node y-1 then converted that number into time to have a plastochrone interval of 38 days. As mangroves are taller in the southern Red Sea where both temperature and nutrients are higher than the Central Red Sea, we assessed nutrient status Avicennia marina propagules and naturally growing leaves to find the leaves low in nutrient concentrations (N < 1.5 %, P < 0.09 %, Fe < 0.06) and that nutrients are reabsorbed before shedding the leaves (69%, 72% and 35% for N, P, and Fe respectively). As a result, we conducted a fertilization experiment (N, P, Fe and combinations) to find that iron additions alone led to significant growth responses. Moreover, we estimated their leaf production and used our previous estimates of both the total cover mangrove in the Red Sea along with plastochrone interval to assess their total nutrients flux per year to be 2414 t N, 139 t P and 98 t Fe. We found them to sequester 34 g m-2 y-1, which imply 4590 tons of carbon

  13. 南京小龙山钾矿区植物根际可培养细菌的遗传多样性分析%Genetic diversity of cultivable bacteria of dominant plants in a potassium mine tailing of Nanjing

    Institute of Scientific and Technical Information of China (English)

    王静; 盛下放; 曹建芳; 张树奎; 张垠; 何琳燕

    2009-01-01

    [Objective] Plant rhizosphere bacteria play an important role in biogeochemical cycles. Microbial diversity of cultivable bacteria from soil-plant-mineral system in a mine tailing was assessed. [Methods] Cultivable bacteria were isolated by plating and screening from plant root, rhizosphere and bulk soils of predominant plants in a mine tailing of Nanjing, Jiangsu Province. Phylogenetic analyse based on 16S rDNA sequence comparisons and amplified rDNA restriction analysis of isolates were investigated. [Results] In total,60 pure cultures were isolated; they could be grouped into 18 different operational taxonomic units (OTU) at the similarity level of 60% . Nineteen bacterial strains belonged to eleven genera (Bhizobium, Pseudomonas, Pantoea, Arthrobacter, Microbacterium, Bacillus, Paenibacillus , Acinetobacter, Sphingomonas, Kocuria, Mitsuaria) of three major phylogenetic groups ( Proteobacteria, Actinobacteria, Firmicutes) . Rhizobium, Pseudomonas and Pantoea were the dominant groups. [ Conclusion] Different cultivable bacteria inhabited in roots and soils of dominant plants in the mine tailing. They might play a certain role in the soil-plant-mineral environment.%[目的]矿区优势植物可培养细菌生物多样性研究将有助于了解植物根际细菌与矿物,植物根系相互作用及对矿物风化和土壤形成的重要影响.[方法]采用纯培养法分离南京小龙山废钾矿区野生植物野塘蒿,千金子和栽培植物甘薯根内与根周围土壤的可培养细菌,通过16S rDNA限制性酶切多态性分析(amplified rDNA restriction analysis,ARDRA)和16S rDNA序列分析研究了可培养细菌的多样性.[结果]分离纯化到60株具不同菌落形态的可培养细菌,在60%相似水平上可分为18个OTU.19株代表菌株分别属于3个门,10个科,11个属.多数菌株属于变形菌门(α-proteobacteria,4株,21.1%;β-proteobacteria,2株,10.5%;γ-proteobaeteria,6株,31.6%).假单胞菌属(Pseudomonas),泛菌属(Pantoea)和

  14. Current European Labyrinthula zosterae are not virulent and modulate seagrass (Zostera marina defense gene expression.

    Directory of Open Access Journals (Sweden)

    Janina Brakel

    Full Text Available Pro- and eukaryotic microbes associated with multi-cellular organisms are receiving increasing attention as a driving factor in ecosystems. Endophytes in plants can change host performance by altering nutrient uptake, secondary metabolite production or defense mechanisms. Recent studies detected widespread prevalence of Labyrinthula zosterae in European Zostera marina meadows, a protist that allegedly caused a massive amphi-Atlantic seagrass die-off event in the 1930's, while showing only limited virulence today. As a limiting factor for pathogenicity, we investigated genotype × genotype interactions of host and pathogen from different regions (10-100 km-scale through reciprocal infection. Although the endophyte rapidly infected Z. marina, we found little evidence that Z. marina was negatively impacted by L. zosterae. Instead Z. marina showed enhanced leaf growth and kept endophyte abundance low. Moreover, we found almost no interaction of protist × eelgrass-origin on different parameters of L. zosterae virulence/Z. marina performance, and also no increase in mortality after experimental infection. In a target gene approach, we identified a significant down-regulation in the expression of 6/11 genes from the defense cascade of Z. marina after real-time quantitative PCR, revealing strong immune modulation of the host's defense by a potential parasite for the first time in a marine plant. Nevertheless, one gene involved in phenol synthesis was strongly up-regulated, indicating that Z. marina plants were probably able to control the level of infection. There was no change in expression in a general stress indicator gene (HSP70. Mean L. zosterae abundances decreased below 10% after 16 days of experimental runtime. We conclude that under non-stress conditions L. zosterae infection in the study region is not associated with substantial virulence.

  15. Eelgrass (Zostera marina Food Web Structure in Different Environmental Settings.

    Directory of Open Access Journals (Sweden)

    Jonas Thormar

    Full Text Available This study compares the structure of eelgrass (Zostera marina L. meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure.

  16. Eelgrass (Zostera marina) Food Web Structure in Different Environmental Settings.

    Science.gov (United States)

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne; Boström, Christoffer; Clausen, Kevin Kuhlmann; Krause-Jensen, Dorte; Olesen, Birgit; Rasmussen, Jonas Ribergaard; Svensson, Carl Johan; Holmer, Marianne

    2016-01-01

    This study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure.

  17. Auditing a flooded quarry prior to marina development

    Science.gov (United States)

    Baillie, Priscilla W.

    1992-07-01

    Development of a marina in a flooded brownstone quarry will require construction of a canal to the Connecticut River through an isthmus separating the two systems. An environmental audit over a 16-month period developed quantitative limnological data required by regulatory agencies. The deep quarry basin, protected by high sandstone walls, became strongly stratified in summer. Development of littoral vegetation in the quarry was prevented by the steep sides of the basin. Unusual characteristics of the manmade quarry basin, compared to most natural lakes in Connecticut, included a mean depth of 14 m, an intense thermocline, and negative heterograde oxygen profiles with metalimnetic minima. Alkalinity, conductivity, and nutrient levels differed significantly between the quarry and the river. Mean chlorophyll a concentrations in the two systems were similar, but the distribution of phytoplankton classes were quite different. The environmental audit, by comparing physical, chemical, and biological characteristics of the quarry to those of the river, allowed prediction of changes in trophic status when the two systems are joined.

  18. Spirulina cultivation in China

    Science.gov (United States)

    Wu, Bo-Tang; Xiang, Wen-Zhou; Zeng, Cheng-Kui

    1998-03-01

    This paper reviews and discusses the development and many problems of Spirulina cultivation in China, points out the advantages and disadvantages of open photobioreactor system, and predicts that seawater Spirulina cultivation will be a new trend to be strengthened and emphasized due to its special physiological characteristics, easier management, lower fertilizer cost, and higher resistance to contaminants and rare pollution of chemicals.

  19. A Summary of Eelgrass (Zostera marina) Reproductive Biology with an Emphasis on Seed Biology and Ecology from the Chesapeake Bay Region

    Science.gov (United States)

    2007-12-01

    features on the bottom such as animal burrows, pits, and mounds, act to shield seeds from flow and prevent their being washed out (Luckenbach and Orth...marina L. seeds. Biologia Marina Mediterranea 7:55-58. Harwell, M. C., and R. J. Orth. 1999. Eelgrass (Zostera marina L.) seed protection for field

  20. Burial of Zostera marina seeds in sediment inhabited by three polychaetes: laboratory and field studies

    DEFF Research Database (Denmark)

    Delefosse, Matthieu; Kristensen, Erik

    2012-01-01

    The large number of seeds produced by eelgrass, Zostera marina, provides this plant with a potential to disperse widely and colonise newareas. After dispersal, seedsmust be buried into sediment for assuring long-term survival, successful germination and safe seedling development. Seedsmay be buried......–3200 ind m −2), Arenicola marina (20–80 ind m−2), and the invasive Marenzelleria viridis (400–1600 ind m −2). The obtained results were subsequently compared with burial rates of seed mimics in experimental field plots (1m2) dominated by the respective polychaetes. High recovery of seeds in the laboratory...... (97–100%) suggested that none of these polychaetes species feed on eelgrass seeds. N. diversicolor transported seeds rapidly (marina and M. viridis buried seeds by depositing their faeces on top of the sediment...

  1. El Instituto Hidrográfico de la Marina

    Directory of Open Access Journals (Sweden)

    Pérez Carrillo de Albornoz, Francisco J.

    2002-10-01

    Full Text Available Not available

    Se expone en este artículo la amplia labor que desarrolla el Instituto Hidrográfico de la Marina (IHM y su participación en múltiples programas y proyectos nacionales e internacionales, representando a España y manteniendo relaciones permanentes de colaboración con diversas Organizaciones, Comisiones y Comités de carácter supranacional. Tras una síntesis histórica del IHM, cuyos orígenes en el Padrón Real de 1508 le otorgan la rimacía mundial como Instituto Hidrográfico, se describen detalladamente las actividades que desarrolla el Instituto en las diferentes áreas de su competencia (Hidrografia, Geodesia y Fotogrametría, Cartografía, Navegación, Oceanografía, destacando el intenso y continuado trabajo que realizan sus buques hidrográficos y el proceso de transformación que se está llevando a cabo para implantar las modernas tecnologías en todos estos campos de actuación. Haciendo honor a la cita de que «Europa aprendió a navegar en libros españoles», se recogen también en este artículo las numerosas publicaciones que continúa editando el Instituto, como responsable que es de mantener actualizada la cartografía náutica y sus correspondientes avisos y ayudas a la navegación, para finalizar con una referencia a la labor docente que desarrolla su Escuela de Hidrografía.

  2. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model.

    Science.gov (United States)

    Furman, Bradley T; Peterson, Bradley J

    2015-01-01

    Ecophysiological stress and physical disturbance are capable of structuring meadows through a combination of direct biomass removal and recruitment limitation; however, predicting these effects at landscape scales has rarely been successful. To model environmental influence on sexual recruitment in perennial Zostera marina, we selected a sub-tidal, light-replete study site with seasonal extremes in temperature and wave energy. During an 8-year observation period, areal coverage increased from 4.8 to 42.7%. Gains were stepwise in pattern, attributable to annual recruitment of patches followed by centrifugal growth and coalescence. Recruitment varied from 13 to 4,894 patches per year. Using a multiple linear regression approach, we examined the association between patch appearance and relative wave energy, atmospheric condition and water temperature. Two models were developed, one appropriate for the dispersal of naked seeds, and another for rafted flowers. Results indicated that both modes of sexual recruitment varied as functions of wind, temperature, rainfall and wave energy, with a regime shift in wind-wave energy corresponding to periods of rapid colonization within our site. Temporal correlations between sexual recruitment and time-lagged climatic summaries highlighted floral induction, seed bank and small patch development as periods of vulnerability. Given global losses in seagrass coverage, regions of recovery and re-colonization will become increasingly important. Lacking landscape-scale process models for seagrass recruitment, temporally explicit statistical approaches presented here could be used to forecast colonization trajectories and to provide managers with real-time estimates of future meadow performance; i.e., when to expect a good year in terms of seagrass expansion. To facilitate use as forecasting tools, we did not use statistical composites or normalized variables as our predictors. This study, therefore, represents a first step toward linking

  3. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model.

    Directory of Open Access Journals (Sweden)

    Bradley T Furman

    Full Text Available Ecophysiological stress and physical disturbance are capable of structuring meadows through a combination of direct biomass removal and recruitment limitation; however, predicting these effects at landscape scales has rarely been successful. To model environmental influence on sexual recruitment in perennial Zostera marina, we selected a sub-tidal, light-replete study site with seasonal extremes in temperature and wave energy. During an 8-year observation period, areal coverage increased from 4.8 to 42.7%. Gains were stepwise in pattern, attributable to annual recruitment of patches followed by centrifugal growth and coalescence. Recruitment varied from 13 to 4,894 patches per year. Using a multiple linear regression approach, we examined the association between patch appearance and relative wave energy, atmospheric condition and water temperature. Two models were developed, one appropriate for the dispersal of naked seeds, and another for rafted flowers. Results indicated that both modes of sexual recruitment varied as functions of wind, temperature, rainfall and wave energy, with a regime shift in wind-wave energy corresponding to periods of rapid colonization within our site. Temporal correlations between sexual recruitment and time-lagged climatic summaries highlighted floral induction, seed bank and small patch development as periods of vulnerability. Given global losses in seagrass coverage, regions of recovery and re-colonization will become increasingly important. Lacking landscape-scale process models for seagrass recruitment, temporally explicit statistical approaches presented here could be used to forecast colonization trajectories and to provide managers with real-time estimates of future meadow performance; i.e., when to expect a good year in terms of seagrass expansion. To facilitate use as forecasting tools, we did not use statistical composites or normalized variables as our predictors. This study, therefore, represents a first

  4. Detection of microbial diversity in endocarditis using cultivation-independent molecular techniques

    DEFF Research Database (Denmark)

    Wolff, Tine Y; Moser, Claus Ernst; Bundgaard, Henning

    2011-01-01

    of cultivation and molecular methods, and for these samples the identified bacteria are known to be frequently involved with IE. Many of the additional bacteria only identified by the molecular methods are not reported as common causes of IE. Conclusions: Application of molecular tools in addition to cultivation...... and all were monomicrobial. Molecular methods showed the presence of DNA from multiple bacterial species in 6 of the samples and indicated a larger variety of bacteria in the different samples than identified by cultivation. For 8 of the patients there was a good correlation between the results...

  5. Functional State Modelling of Cultivation Processes: Dissolved Oxygen Limitation State

    Directory of Open Access Journals (Sweden)

    Olympia Roeva

    2015-04-01

    Full Text Available A new functional state, namely dissolved oxygen limitation state for both bacteria Escherichia coli and yeast Saccharomyces cerevisiae fed-batch cultivation processes is presented in this study. Functional state modelling approach is applied to cultivation processes in order to overcome the main disadvantages of using global process model, namely complex model structure and a big number of model parameters. Alongwith the newly introduced dissolved oxygen limitation state, second acetate production state and first acetate production state are recognized during the fed-batch cultivation of E. coli, while mixed oxidative state and first ethanol production state are recognized during the fed-batch cultivation of S. cerevisiae. For all mentioned above functional states both structural and parameter identification is here performed based on experimental data of E. coli and S. cerevisiae fed-batch cultivations.

  6. Chasing the Intangible: a Conversation on Theatre, Language, and Artistic Migrations with Irish Playwright Marina Carr

    Directory of Open Access Journals (Sweden)

    Valentina Rapetti

    2014-07-01

    Full Text Available Offally born Marina Carr is amongst the most prolific, influential and internationally renowned Irish playwrights of our times. Since her debut on the avant-garde side of the Dublin theatre scene in the late Eighties, she has had  seventeen plays professionally produced, both in and outside Ireland. Her earlier work is influenced by Samuel Beckett’s Absurdist drama, while in her most mature and recent plays she draws on both classical and Irish mythology, Greek tragedies and Shakespeare’s poetics. In this interview, Marina Carr recalls and discusses some pivotal moments of her upbringing and career; she also speaks about language, landscape, dream

  7. New species of Parapharyngodon (Nematoda: Pharyngodonidae) in Rhinella marina (Anura: Bufonidae) from Grenada, West Indies

    Science.gov (United States)

    Bursey, Charles; Drake, Michael; Cole, Rebecca; Sterner, Mauritz; Pinckney, Rhonda; Zieger, Ulrike

    2013-01-01

    Parapharyngodon grenadaensis n. sp. (Nematoda: Pharyngodonidae) from the large intestine of the cane toad, Rhinella marina, is described and illustrated. Parapharyngodon grenadaensis n. sp. is the 48th species assigned to the genus and the 16th species from the Neotropical region. It differs from other species in the genus by possessing 4 pairs of caudal papillae, an echinate anterior cloacal lip, and a blunt spicule of 67–104 μm. This is only the second report of R. marina harboring a species of Parapharyngodon.

  8. Low Diversity Bacterial Community and the Trapping Activity of Metabolites from Cultivable Bacteria Species in the Female Reproductive System of the Oriental Fruit Fly, Bactrocera dorsalis Hendel (Diptera: Tephritidae

    Directory of Open Access Journals (Sweden)

    Hongyu Zhang

    2012-05-01

    Full Text Available Our goal was to identify the bacteria inhabiting the reproductive system of the female oriental fruit fly, Bactrocera dorsalis (Hendel, and evaluate the chemotaxis of B. dorsalis to the metabolites produced by the bacteria. Based on 16S rRNA-based polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE, 18 operational taxonomic units (OTUs were assigned to the five bacterial classes Betaproteobacteria, Alphaproteobacteria, Gammaproteobacteria, Bacilli and Actinobacteria. Nine OTUs were assigned to Gammaproteobacteria, which was the most highly represented class. Enterobacteriaceae constituted the dominant family, and within this family, three genera and five species were identified, including Enterobacter sakazakii, Klebsiella oxytoca, Klebsiella pneumoniae, Raoultella terrigena and Enterobacter amnigenus. In this set, the first two species were the dominant components, and the latter three species were the minor ones. Finally, we found that the metabolites produced by R. terrigena, K. oxytoca and K. pneumoniae were attractive to the B. dorsalis adults, and in field studies, B. dorsalis adults were most attracted to K. oxytoca. Collectively, our results suggest that the female reproductive system plays an important role in the transfer of enterobacteria from the gut to fruit. Our data may prompt the development of a female-targeted population control strategy for this fly.

  9. Screening of Salt-stress, Antioxidant Enzyme, and Antimicrobial Activity of Leave extracts of Mangroves Avicennia marina L. from Hodaidah, Yemen

    Directory of Open Access Journals (Sweden)

    Maher A. Al Maqtari

    2014-05-01

    Full Text Available In the present study the salinity stress, antioxidant enzyme and antimicrobial activities of leaf extract of Avicennia marinawere investigated. As visualized from SDS-PAGE, no differences was found in number of protein band, but the intensities of several protein bands having apparent molecular mass by reduced severely in salt treated samples with enhanced activities of CAT, POX and GPX. Escherichia coli (ATCC8739, Staphylococus aureus (ATCC 6538, and Bacillus subtilis (ATCC6633 and fungus (Candida albicans ATCC 2091, and Aspergillus niger ATCC 16404 were used as the test pathogenic bacteria and fungi, respectively in this study. The Avicennia marina extract possessed antibacterial activity against E. coli, S. aureus, and B. subtilis (12, 6, and 7 mm respectively, with antifungal activity against C. albicans and A. niger (9 and 10 mm.

  10. Study on optimal cultivating bacteria and its biological conditions of anthracene degrading degrading kinetics to anthracene%蒽降解菌T2的最佳培养条件及其对蒽的生物降解动力学研究

    Institute of Scientific and Technical Information of China (English)

    单宝来; 张秀霞; 张剑杰; 赵朝成

    2011-01-01

    A mixed bacteria T2 which used anthracene as the sole carbon source was screened from the long-term petroleum polluted soil. When the inoculation amount of T2, pH, temperature, shaking-bed's speed and the initial concentration of anthracene were 1% , 7, 30℃, 120 r/rain and 100 rag/L, respectively, the degrading rate of T2 to anthracene could reach 56.6% through 5 days' cultivation. The optimal cultivating conditions of strain T2 were obtained through studying the cultivating conditions of T2 , the result showed that when the inoculation amount of T2, pH, temperature and the initial concentration of anthracene were 5% , 6, 35℃ and 40 mg/L, respectively, the strain grew best. In addition, the degrading kinetics experiment of strain T2 to anthracene was carried out, the result showed that the residual concentration of anthracene Y(mg/L) and time t (h) was in line with the equation Y=2. 544 e( -0.00275)t.%从长期被石油污染的土壤中筛选得到一株以蒽为惟一碳源的混合菌T2,在接种量为1%,pH为7,温度为30℃,摇床转速为120r/min,蒽的初始浓度为100mg/L的条件下培养5d后,其对蒽的降解率可以达到56.6%。通过单因素实验和正交实验对菌种T2的培养条件进行研究,得到菌种T2的最佳培养条件为:接种量为5%,pH为6,温度为35℃,蒽的初始浓度为40mg/L时,最适合菌种生长。另外,菌种T2对蒽的降解动力学实验的结果表明,蒽的残留浓度Y(mg/L)与时间t(h)符合方程y=2.544e(-0.00275)t.

  11. 从腐败食品中分离的乳酸菌生物被膜形成的影响因素%Effect of Different Cultivation Conditions on Biofilm Formation of Lactic Acid Bacteria Isolated from Spoiled Food

    Institute of Scientific and Technical Information of China (English)

    谢丽斯; 张宏梅; 刘学禄; 张文艳; 黄宝威; 许佳晶; 郑添信; 刘彦兰

    2011-01-01

    从腐败的蔬菜和肉质食品中分离筛选乳酸菌(LAB),并以其作为研究对象,对乳酸菌生物成膜不同影响因素进行研究.生化分离鉴定乳酸菌,在不同的营养物质浓度及培养条件下,用96孔板法检测乳酸菌成膜.在无外添加物,37℃和42℃的培养温度,pH 4有利于乳酸菌生物膜的形成,低温不利于生物膜的形成.低浓度的NaCl可促进LAB形成生物膜,但高于某浓度,就抑制LAB成膜.不同LAB菌株对不同葡萄糖浓度成膜效果不同,且与温度交互作用.结果表明,腐败食品中乳酸菌具有一定的生物被膜形成能力,控制乳酸菌生物膜的形成对于防治食品的腐败变质具有一定的意义.%To isolate and identify lactic acid bacteria (LAB) from spoiled food and investigate the effect of different factors on biofilm formation. The strains were identified by the biochemistry methods. Biofilm formation was tested by microtiter-plate method under the different nutrient conditions, temperature and pH. The strains' biofilm was detected by microtiter - plate method. 37℃, 42℃ and pH4 suboptimal for growth increased the production of biofilm. Low concentration of sodium chloride enhanced the biofilm formation (BF), but above a certain level, BFs were restrained. Different concentrations of glucose have different effect on strains biofilm formation at different temperatures. BFs were spread widely among lactic acid bacteria from spoiled food. Preventing the formation of BFs has its significance in food preservation.

  12. Marina Kaljurand: hoolimata kõigest oli möödunud aasta ikkagi hea aasta / Marina Kaljurand ; interv. Igor Taro

    Index Scriptorium Estoniae

    Kaljurand, Marina, 1962-

    2008-01-01

    Ilmunud ka: Postimees : na russkom jazõke 3. jaan., lk. 5. Postimehe poolt aasta inimeseks valitud Eesti suursaadik Venemaal vastab küsimustele, mis puudutavad hinnangut 2007. aastale, pronkssõduriga seotud sündmuste üleelamist Moskvas, Venemaa poliitikute suhtumist Eestisse, Eesti-Vene suhteid. Kommenteerivad: Urmas Paet, Tiit Matsulevitš, Toomas Hendrik Ilves. Lisa: Marina Kaljurand; Pronkssõduri-sõda

  13. Analysis of transcriptional regulation and tissue-specific expression of Avicennia marina Plasma Membrane Protein 3 suggests it contributes to Na(+) transport and homoeostasis in A. marina.

    Science.gov (United States)

    Chidambaram, Rajalakshmi; Venkataraman, Gayatri; Parida, Ajay

    2015-07-01

    Plasma membrane proteins (PMP3) play a role in cation homoeostasis. The 5' flanking sequence of stress inducible, Avicennia marina PMP3 (AmPMP3prom) was transcriptionally fused to (a) GUS or (b) GFP-AmPMP3 and analyzed in transgenic tobacco. Tissue-histochemical GUS and GFP:AmPMP3 localization are co-incident under basal and stress conditions. AmPMP3prom directed GUS activity is highest in roots. Basal transcription is conferred by a 388bp segment upstream of the translation start site. A 463bp distal enhancer in the AmPMP3prom confers enhanced expression under salinity in all tissues and also responds to increases in salinity. The effect of a central, stem-specific negative regulatory region is suppressed by the distal enhancer. The A. marina rhizosphere encounters dynamic changes in salinity at the inter-tidal interface. The complex, tissue-specific transcriptional responsiveness of AmPMP3 to salinity appears to have evolved in response to these changes. Under salinity, guard cell and phloem-specific expression of GFP:AmPMP3 is highly enhanced. Mesophyll, trichomes, bundle sheath, parenchymatous cortex and xylem parenchyma also show GFP:AmPMP3 expression. Cis-elements conferring stress, root and vascular-specific expression are enriched in the AmPMP3 promoter. Pronounced vascular-specific AmPMP3 expression suggests a role in salinity induced Na(+) transport, storage, and secretion in A. marina.

  14. Domesticated Cultivation of Sulfate-reducing Bacteria and its Efficiency of Sulfate Removal%硫酸盐还原菌的驯化培养及脱硫性能研究

    Institute of Scientific and Technical Information of China (English)

    李连华; 党志; 李舒衡

    2005-01-01

    采用单因素法及静态实验法研究驯化所得硫酸盐还原菌(sulfate-reducing bacteria,SRB),旨在对影响菌群生长的因素及脱硫性能进行分析和研究.结果显示,该菌群属于中温菌,培养与应用均以35℃为宜;生长环境酸碱度较宽,适宜的初始pH值为7.5左右;可在较高的氯化钠浓度下生存,适宜的浓度范围为10%左右.同时,脱硫实验表明菌的脱硫性能和硫酸根离子的去除率随硫酸根浓度的增加逐渐降低.

  15. In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina)

    Energy Technology Data Exchange (ETDEWEB)

    Huesemann, Michael H.; Hausmann, Tom S.; Fortman, Timothy J.; Thom, Ronald M.; Cullinan, Valerie I.

    2009-10-01

    In view of the fact that there are presently no cost-effective in-situ treatment technologies for contaminated sediments, a 60 week long phytoremediation feasibility study was conducted in seawater-supplied outdoor ponds to determine whether eelgrass (Zostera marina) is capable of removing polynuclear aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) from submerged marine sediments. It was determined that all PAHs and PCBs, independent of the number of aromatic rings and degree of chlorination, respectively, were removed to a much larger extent in planted sediments compared to unplanted controls. After 60 weeks of treatment, the concentration of total PAHs decreased by 73% in planted sediments but only 25% in unplanted controls. Similarly, total PCBs declined by 60% in the presence of plants while none were removed in the unplanted sediment. Overall, PAH and PCB biodegradation was greatest in the sediment layer that contained most of the eelgrass roots. Abiotic desorption tests conducted at week 32 confirmed that the phytoremediation process was not controlled by mass-transfer or bioavailability limitations since all PAHs and PCBs desorbed rapidly and to a large extent from the sediment. PAHs were detected in both roots and shoots, with root and shoot bioaccumulation factors for total PAHs amounting to approximately 3 and 1, respectively, after 60 weeks of phytoremediation treatment. Similarly, the root bioccumulation factor for total PCBs was around 4, while no PCBs were detected in the eelgrass leaves at the end of the experiment. The total mass fraction of PAHs and PCBs absorbed and translocated by plant biomass during the 60 week period was insignificant, amounting to less than 0.5% of the total mass of PAHs and PCBs which was initially present in the sediment. Finally, the number of total heterotrophic bacteria and hydrocarbon degraders was slightly but not statistically significantly greater in planted sediments than in unplanted controls

  16. Negative effects of blue mussel ( Mytilus edulis) presence in eelgrass ( Zostera marina) beds in Flensborg fjord, Denmark

    Science.gov (United States)

    Vinther, Hanne Fogh; Laursen, Jens Sund; Holmer, Marianne

    2008-03-01

    The effect of blue mussel ( Mytilus edulis) presence in eelgrass ( Zostera marina) beds was studied from June 2004 to July 2005 in Flensborg fjord, Denmark. The field experiments were conducted at two stations, one with only Z. marina (Eelgrass station) present and one where M. edulis were present in the Z. marina beds (Mixed station). Zostera marina parameters were measured (growth of leaves, shoot density, leaf length, and nutrient content) in combination with epiphyte cover and sediment parameters (sulphate reduction rates, sediment nutrient fluxes, organic content, C, N and P content) to examine possible positive and negative effects of the mussels on eelgrass performance. The fluxes of ammonium from the sediments were stimulated at all sampling dates at the Mixed station, and possibly stimulated epiphyte growth at this station. Further 15N signals in epiphytes from the Mixed station suggested that excretion products from the mussels were important nitrogen sources at this station. Sulphate reduction rates were enhanced at the Mixed station and also sediment sulphide concentrations increased under mussel influence, which may have resulted in sulphide toxicity and decreased growth of Z. marina at this station. The study indicates that for Z. marina beds in Flensborg Fjord the effects of M. edulis in seagrass beds are primarily negative, and raises the question whether this leads to negative effects on the stability and expansion of Z. marina beds.

  17. Mechanisms of seed dormancy in an annual population of Zostera marina (eelgrass) from the Netherlands)

    NARCIS (Netherlands)

    Harrison, P.G.

    1991-01-01

    Mechanisms of dormancy of seeds from an annual population of the seagrass Zostera marina L. (eelgrass) in the SW Netherlands were investigated in the laboratory. Both physiological dormancy (a requirement for reduced salinity for germination) and physical dormancy (imposed by the seed coat) existed

  18. Monitoring of the booster biocide dichlofluanid in water and marine sediment of Greek marinas

    NARCIS (Netherlands)

    Hamwijk, C.; Schouten, A.; Foekema, E.M.; Ravensberg, J.C.; Collombon, M.T.; Schmidt, K.; Kugler, M.

    2005-01-01

    Dichlofluanid (N-dichlorofluoromethylthio-N′-dimethyl-N- phenylsulphamide) is used as booster biocide in antifouling paints. The occurrence of dichlofluanid and its metabolite DMSA (N′-dimethyl-N-phenyl- sulphamide) was monitored in seawater and marine sediment from three Greek marinas. Seawater and

  19. A Low-Cost Planting Technique for Eelgrass (Zostera marina L.).

    Science.gov (United States)

    1982-12-01

    marina and Halodule wrightii for the Stabilization of Sub- tidal Dredged Material," Annual Report, Beaufort Laboratory, Beaufort, N.C., Oct. 1981. FONSECA... Halodule wrightii and the Physical and Chemical Properties of Sediments in a Coastal Plain Estuary Near Beaufort, North Carolina," M.S. Thesis

  20. Size and estimated age of genets in eelgrass, Zostera marina, assessed with microsatellite markers

    NARCIS (Netherlands)

    Reusch, TBH; Stam, WT; Olsen, JL

    1999-01-01

    We examined the spatial distribution of genotypes in a perennial population of eelgrass, Zostera marina L., at two spatial scales. We mapped and sampled 80 ramets in a subtidal area of 20 x 80 m, and an additional 15 ramets in two 1-m(2) sub-quadrats. Ramets were genotyped for seven polymorphic micr

  1. Temporal and spatial dynamics of ephemeral drift-algae in eelgrass, Zostera marina, beds

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Pedersen, Morten Foldager; Olesen, Birgit

    2013-01-01

    Aggregations of unattached, filamentous macroalgae showed high temporal and spatial dynamics in two shallow and relatively sheltered eelgrass (Zostera marina) beds in Aarhus Bay and Isefjord, Denmark. The changes in algal abundance were followed in permanent plots at 1-3 days intervals during three...

  2. Linking Arenicola marina irrigation behavior to oxygen transport and dynamics in sandy sediments

    DEFF Research Database (Denmark)

    Timmermann, Karen; Banta, Gary T.; Glud, Ronnie Nøhr

    2007-01-01

    In this study we examine how the irrigation behavior of the common lugworm Arenicola marina affects the distribution, transport and dynamics of oxygen in sediments using microelectrodes, planar optodes and diagenetic modeling. The irrigation pattern was characterized by a regular recurring periods...

  3. Comparative-Study on Populations of Zostera-Marina L (Eelgrass) - Experimental Germination and Growth

    NARCIS (Netherlands)

    Van Lent, F.; Verschuure, J.M.

    1995-01-01

    Seeds of both perennial and (semi-)annual populations of Zostera marina L. originating from different habitats in the southwestern Netherlands and Roscoff (Brittany, France) were germinated and grown under identical circumstances to identify possible genotypically based differences in their populati

  4. Biodynamic modelling and the prediction of accumulated trace metal concentrations in the polychaete Arenicola marina

    Energy Technology Data Exchange (ETDEWEB)

    Casado-Martinez, M. Carmen, E-mail: c.casado-martinez@nhm.ac.u [Department of Zoology, The Natural History Museum, Cromwell Rd, London SW7 5BD (United Kingdom); Smith, Brian D. [Department of Zoology, The Natural History Museum, Cromwell Rd, London SW7 5BD (United Kingdom); DelValls, T. Angel [Unesco UNITWIN Wicop Chair, Department of Physical-Chemistry, University of Cadiz, Poligono Industrial Rio San Pedro s/n, C.P. 11510 Puerto Real (Cadiz) (Spain); Luoma, Samuel N. [John Muir Institute of the Environment, University of California at Davis, Davis, CA 95616 (United States); Rainbow, Philip S. [Department of Zoology, The Natural History Museum, Cromwell Rd, London SW7 5BD (United Kingdom)

    2009-10-15

    The use of biodynamic models to understand metal uptake directly from sediments by deposit-feeding organisms still represents a special challenge. In this study, accumulated concentrations of Cd, Zn and Ag predicted by biodynamic modelling in the lugworm Arenicola marina have been compared to measured concentrations in field populations in several UK estuaries. The biodynamic model predicted accumulated field Cd concentrations remarkably accurately, and predicted bioaccumulated Ag concentrations were in the range of those measured in lugworms collected from the field. For Zn the model showed less but still good comparability, accurately predicting Zn bioaccumulation in A. marina at high sediment concentrations but underestimating accumulated Zn in the worms from sites with low and intermediate levels of Zn sediment contamination. Therefore, it appears that the physiological parameters experimentally derived for A. marina are applicable to the conditions encountered in these environments and that the assumptions made in the model are plausible. - Biodynamic modelling predicts accumulated field concentrations of Ag, Cd and Zn in the deposit-feeding polychaete Arenicola marina.

  5. 78 FR 45061 - Safety Zone; Sister Bay Marina Fest Fireworks and Ski Show, Sister Bay, WI

    Science.gov (United States)

    2013-07-26

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Sister Bay Marina Fest Fireworks and Ski... intended to restrict vessels from a portion of Sister Bay due to a fireworks display and ski show. This... with the fireworks display and ski show in Sister Bay on August 31, 2013. DATES: This rule is...

  6. Variation in genetic traits of the lugworm Arenicola marina: temperature related expression of mitochondrial allozymes?

    NARCIS (Netherlands)

    Hummel, H.; Sommer, A.; Bogaards, R.H.; Portner, H.O.

    1997-01-01

    Genetic traits of the lugworm Arenicola marina were determined for 4 Atlantic populations from France to Norway and compared with a population from the sub-arctic White Sea in Russia. Seven loci were analysed using horizontal starch gel electrophoresis. A low heterozygosity (0.09 to 0.17) and a non-

  7. Een studie van de variabiliteit van Spergularia media en Spergularia marina van Nederland

    NARCIS (Netherlands)

    Sterk, Adrianus Anne

    1968-01-01

    In the Netherlands the distinction of the species Spergularia media (L.) C. Presl (Syn.: S.marginata (DC.) Kittel) and Spergularia marina (L.) Grisebach (Syn.: S.salina J. et C. Presl) is not always easy. These taxonomical difficulties gave cause to investigate the variability of these two halophilo

  8. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    NARCIS (Netherlands)

    Olsen, Jeanine; Rouzé, Pierre; Verhelst, Bram; Lin, Yao-Cheng; Bayer, Till; Collen, Jonas; Dattolo, Emanuela; De Paoli, Emanuele; Dittami, Simon; Maumus, Florian; Michel, Gurvan; Kersting, Anna; Lauritano, Chiara; Lohaus, Rolf; Töpel, Mats; Tonon, Thierry; Vanneste, Kevin; Amirebrahimi, Mojgan; Brakel, Janina; Boström, Christoffer; Chovatia, Mansi; Grimwood, Jane; Jenkins, Jerry W; Jueterbock, Alexander; Mraz, Amy; Stam, Wytze T; Tice, Hope; Bornberg-Bauer, Erich; Green, Pamela J; Pearson, Gareth A; Procaccini, Gabriele; Duarte, Carlos M; Schmutz, Jeremy; Reusch, Thorsten B H; Van de Peer, Yves

    2016-01-01

    Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals u

  9. Physiological Responses of Zostera marina and Cymodocea nodosa to Light-Limitation Stress

    Science.gov (United States)

    Silva, João; Barrote, Isabel; Costa, Monya M.; Albano, Sílvia; Santos, Rui

    2013-01-01

    The effects of light-limitation stress were investigated in natural stands of the seagrasses Zostera marina and Cymodocea nodosa in Ria Formosa coastal lagoon, southern Portugal. Three levels of light attenuation were imposed for 3 weeks in two adjacent meadows (2–3 m depth), each dominated by one species. The response of photosynthesis to light was determined with oxygen electrodes. Chlorophylls and carotenoids were determined by high-pressure liquid chromatography (HPLC). Soluble protein, carbohydrates, malondialdehyde and phenol contents were also analysed. Both species showed evident signs of photoacclimation. Their maximum photosynthetic rates were significantly reduced with shading. Ratios between specific light harvesting carotenoids and the epoxidation state of xanthophyll cycle carotenoids revealed significantly higher light harvesting efficiency of C. nodosa, a competitive advantage in a low light environment. The contents of both soluble sugars and starch were considerably lower in Z. marina plants, particularly in the rhizomes, decreasing even further with shading. The different carbohydrate energy storage strategies found between the two species clearly favour C. nodosa's resilience to light deprivation, a condition enhanced by its intrinsic arrangement of the pigment pool. On the other hand, Z. marina revealed a lower tolerance to light reduction, mostly due to a less plastic arrangement of the pigment pool and lower carbohydrate storage. Our findings indicate that Z. marina is close to a light-mediated ecophysiological threshold in Ria Formosa. PMID:24312260

  10. The cane or marine toad, Rhinella marina (Anura, Bufonidae): two genetically and morphologically distinct species.

    Science.gov (United States)

    Acevedo, Aldemar A; Lampo, Margarita; Cipriani, Roberto

    2016-04-18

    Rhinella marina is a Neotropical toad that has been introduced widely worldwide. Its toxic effects to frog-eating predators threaten the native and domestic fauna of some regions where it has been introduced. Despite previous studies suggesting two genetically distinct cryptic species within R. marina, one east and one west of the Andes, its taxonomic status remained unresolved due to the absence of morphological complementary evidence. For the first time, data from two mitochondrial genes (ND3 and CR) and 23 morphometric landmarks are combined to evaluate the taxonomic status of this species. Our results support the hypothesis of two separate evolutionary lineages within R. marina and demonstrate that these lineages have significantly diverged in skull shape. We identified two distinct morphotypes, one eastern and one Andean western, with no overlapping morphospaces. The geographic pattern of genetic variation was consistent with a stable structured population with no evidence of recent demographic or geographic expansions. The concordance between the observed geographic patterns in morphometric and genic traits calls for the recognition of two species under R. marina name.

  11. Atlantic Cod (Gadus morhua benefits from the availability of seagrass (Zostera marina nursery habitat

    Directory of Open Access Journals (Sweden)

    Richard J. Lilley

    2014-12-01

    Full Text Available The Atlantic cod (Gadus morhua is a species of significant economic and historic importance but infamous for its decline. Apart from overfishing, the causes of this decline and its subsequent lack of recovery remain largely unresolved. Indeed, the degree to which specific habitats are important for this species remains unquantified at the scale of North Atlantic. Here, the literature on the role of eelgrass meadows (Zostera marina as valuable nursery habitat for the Atlantic cod is reviewed and synthesized. Evidence is presented on relative densities of Atlantic cod in shallow water environments and in eelgrass meadows in comparison to alternative habitats. In addition, evidence pertaining to the ’viability gains’ attributed to the use of eelgrass meadows as nursery habitat (growth and survival by juvenile Atlantic cod is analyzed. Although juvenile Atlantic cod use of Z. marina is found to be facultative, when possible, available literatures indicates that they may select Z. marina as a nursery habitat where they are found in high density (average of at least 246 ha−1. From their use of Z. marina habitat the juvenile Atlantic cod receives viability benefits from it, improving their chances of reaching maturation. This paper provides strong evidence that eelgrass meadows are of significant importance to contributing to Atlantic cod stocks.

  12. Phylogeographic differentiation versus transcriptomic adaptation to warm temperatures in Zostera marina, a globally important seagrass

    NARCIS (Netherlands)

    Jueterbock, Alexander; Franssen, S. U.; Bergmann, N.; Gu, J.; Coyer, J. A.; Reusch, T. B. H.; Bornberg-Bauer, E.; Olsen, J. L.

    2016-01-01

    Populations distributed across a broad thermal cline are instrumental in addressing adaptation to increasing temperatures under global warming. Using a space-for-time substitution design, we tested for parallel adaptation to warm temperatures along two independent thermal clines in Zostera marina, t

  13. Influence of model selection on the predicted distribution of the seagrass Zostera marina

    Science.gov (United States)

    Downie, Anna-Leena; von Numers, Mikael; Boström, Christoffer

    2013-04-01

    There is an increasing need to model the distribution of species and habitats for effective conservation planning, but there is a paucity of models for the marine environment. We used presence (131) and absence (219) records of the marine angiosperm Zostera marina L. from the archipelago of SW Finland, northern Baltic Sea, to model its distribution in a 5400 km2 area. We used depth, slope, turbidity, wave exposure and distance to sandy shores as environmental predictors, and compared a presence-absence method: generalised additive model (GAM), with a presence only method: maximum entropy (Maxent). Models were validated using semi-independent data sets. Both models performed well and described the niche of Z. marina fairly consistently, although there were differences in the way the models weighted the environmental variables, and consequently the spatial predictions differed somewhat. A notable outcome from the process was that with relatively equal model performance, the area actually predicted in geographical space can vary by twofold. The area predicted as suitable for Z. marina by the ensemble was almost half of that predicted by the GAM model by itself. The ensemble of model predictions increased the model predictive capability marginally and clearly shifted the model towards a more conservative prediction, increasing specificity, but at the same time sacrificing sensitivity. The environmental predictors selected into the final models described the potential distribution of Z. marina well and showed that in the northern Baltic the species occupies a narrow niche, typically thriving in shallow and moderately exposed to exposed locations near sandy shores. We conclude that a prediction based on a combination of model results provides a more realistic estimate of the core area suitable for Z. marina and should be the modelling approach implemented in conservation planning and management.

  14. Chapter F. The Loma Prieta, California, Earthquake of October 17, 1989 - Marina District

    Science.gov (United States)

    O'Rourke, Thomas D.

    1992-01-01

    During the earthquake, a total land area of about 4,300 km2 was shaken with seismic intensities that can cause significant damage to structures. The area of the Marina District of San Francisco is only 4.0 km2--less than 0.1 percent of the area most strongly affected by the earthquake--but its significance with respect to engineering, seismology, and planning far outstrips its proportion of shaken terrain and makes it a centerpiece for lessons learned from the earthquake. The Marina District provides perhaps the most comprehensive case history of seismic effects at a specific site developed for any earthquake. The reports assembled in this chapter, which provide an account of these seismic effects, constitute a unique collection of studies on site, as well as infrastructure and societal, response that cover virtually all aspects of the earthquake, ranging from incoming ground waves to the outgoing airwaves used for emergency communication. The Marina District encompasses the area bounded by San Francisco Bay on the north, the Presidio on the west, and Lombard Street and Van Ness Avenue on the south and east, respectively. Nearly all of the earthquake damage in the Marina District, however, occurred within a considerably smaller area of about 0.75 km2, bounded by San Francisco Bay and Baker, Chestnut, and Buchanan Streets. At least five major aspects of earthquake response in the Marina District are covered by the reports in this chapter: (1) dynamic site response, (2) soil liquefaction, (3) lifeline performance, (4) building performance, and (5) emergency services.

  15. Transcriptome sequencing and analysis of leaf tissue of Avicennia marina using the Illumina platform.

    Directory of Open Access Journals (Sweden)

    Jianzi Huang

    Full Text Available Avicennia marina is a widely distributed mangrove species that thrives in high-salinity habitats. It plays a significant role in supporting coastal ecosystem and holds unique potential for studying molecular mechanisms underlying ecological adaptation. Despite and sometimes because of its numerous merits, this species is facing increasing pressure of exploitation and deforestation. Both study on adaptation mechanisms and conservation efforts necessitate more genomic resources for A. marina. In this study, we used Illumina sequencing of an A. marina foliar cDNA library to generate a transcriptome dataset for gene and marker discovery. We obtained 40 million high-quality reads and assembled them into 91,125 unigenes with a mean length of 463 bp. These unigenes covered most of the publicly available A. marina Sanger ESTs and greatly extended the repertoire of transcripts for this species. A total of 54,497 and 32,637 unigenes were annotated based on homology to sequences in the NCBI non-redundant and the Swiss-prot protein databases, respectively. Both Gene Ontology (GO analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG pathway analysis revealed some transcriptomic signatures of stress adaptation for this halophytic species. We also detected an extraordinary amount of transcripts derived from fungal endophytes and demonstrated the utility of transcriptome sequencing in surveying endophyte diversity without isolating them out of plant tissues. Additionally, we identified 3,423 candidate simple sequence repeats (SSRs from 3,141 unigenes with a density of one SSR locus every 8.25 kb sequence. Our transcriptomic data will provide valuable resources for ecological, genetic and evolutionary studies in A. marina.

  16. Effect of the technology of high cell density cultivation and vacuum freeze-drying on cryotolerance property of lactic acid bacteria%高密度发酵和真空冷冻干燥工艺对乳酸菌抗冷冻性的影响

    Institute of Scientific and Technical Information of China (English)

    刘彩虹; 邵玉宇; 任艳; 孟和毕力格; 张和平

    2013-01-01

    经真空冷冻干燥得到的乳酸菌发酵剂存活率和后期的低温贮藏稳定性与诸多因素相关.本文综述了制备乳酸菌发酵剂过程中高密度发酵和真空冷冻干燥工艺的不同对乳酸菌抗冷冻性的影响,其中高密度发酵过程中的培养基组分、培养温度、发酵恒定pH、中和剂的选择、菌体收获时期和发酵结束后处理以及真空冷冻干燥过程中保护剂的添加、预冷冻处理等是影响乳酸菌抗冷冻性的重要因素.通过对这些相关因素的综述分析,为提高乳酸菌发酵剂的冻干存活率和后期的低温贮藏稳定性提供新的思路,且应用抗冷冻性强、活力高的乳酸菌发酵剂对有效提高乳制品的质量和企业的经济效益意义重大.%The survival rate and low temperature stability of lactic acid bacterial starter obtained by vacuum freeze-drying are governed by several factors. In this paper, the influence of the technology of high cell density cultivation and vacuum freeze-drying on cryotolerance of lactic acid bacteria for use as starters was analyzed. During fermentation, the following factors had a significant effect on the cryosurvival of lactic acid bacteria: culture medium, temperature control, pH stat, the neutralizer used, the harvesting stage of the cell crop, and post-fermentation handling of the concentrated cells. Factors affecting cell viability subjected to lyophilization include the following: cryoprotectants used, conditions used in initial freezing of the cell concentrate, and during vacuum freeze-drying. A good understanding of these factors will provide a reliable technology for preserving high cell density starter. The use of starter bacteria with high cryotolerance and viability can improve the quality of fermented milk products and boost economic benefits to the dairy industry.

  17. Study on Initial Sludge of Bacteria Cultivation and Domestication in the Biological Treatment Sys-tem of Landfill Leachate%垃圾填埋渗滤液生化处理系统中初期菌种污泥培养及驯化研究

    Institute of Scientific and Technical Information of China (English)

    唐中亚; 邓飞飞; 孔为丽; 岳梅

    2014-01-01

    There are limitations in the biochemical treatment of high concentrations leachate. Especially when the biodegradable organic objects in the leachate can not be completely degraded in beginning,So the sludge of bacteria need to be acclimated. The study is based on actual project case. Sludge cultivation techniques and relevant factors in biochemical treatment technology of landfill leachate projects during two months’ debugging step are summed up. The using Sludge which have about 80% water,and choose the low load domestication and cultivation mode.The sludge is cultivated through aerobic digestion before anaer-obic digestion. raw water dilution ratio is controled to 10 times, Internal biochemical reflux reflux ratio is 3,with carbon nitrogen ratio of 5:1,During the cultivating process,denitrification and pH,temperature,al-kalinity, dissolved oxygen and other influencing parameters should be regulated. After debugging, effluent water quality can reach the requirements of subsequent MBR process with NH3-N content of 12~27mg/L, CODcr,58~107mg/L,pH6.8~8.0.%对高浓度渗滤液进行生化处理具有局限性,尤其对在初期无法完全降解渗滤液中难降解的特殊有机物质,需对菌种污泥进行驯化。该研究基于实际工程案例,总结2个月渗滤液生化处理技术工程中初始调试期的污泥培养技术及其影响因素参数控制。菌种污泥含水量80%左右,采用低负荷培养驯化的模式,按照先好氧后厌氧培养的顺序,驯化初期的原水稀释倍数为10倍,生化内回流比为3,控制生化池碳氮比为5∶1,在污泥培养驯化期间注意调控硝化及反硝化池中的pH、温度、碱度、溶解氧等环境影响参数。经过调试后,生化处理系统出水水质为NH3-N 12~27mg/L、CODcr 58~107mg/L、pH 6.8~8.0,出水水质满足后续MRB工艺要求[1]。

  18. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach.

    Science.gov (United States)

    Simões, Marta Filipa; Antunes, André; Ottoni, Cristiane A; Amini, Mohammad Shoaib; Alam, Intikhab; Alzubaidy, Hanin; Mokhtar, Noor-Azlin; Archer, John A C; Bajic, Vladimir B

    2015-10-01

    Covering a quarter of the world's tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%-85%), while Basidiomycota was less abundant (14%-24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  19. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina from the Red Sea — A Metagenomic Approach

    Directory of Open Access Journals (Sweden)

    Marta Filipa Simões

    2015-10-01

    Full Text Available Covering a quarter of the world’s tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%, while Basidiomycota was less abundant (14%–24%, yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  20. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea-A Metagenomic Approach

    Institute of Scientific and Technical Information of China (English)

    Marta Filipa Simoes; Andre Antunes; Cristiane A Ottoni; Mohammad Shoaib Amini; Intikhab Alam; Hanin Alzubaidy; Noor-Azlin Mokhtar; John AC Archer; Vladimir B Bajic

    2015-01-01

    Covering a quarter of the world’s tropical coastlines and being one of the most threat-ened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray man-groves (Avicennia marina) remain poorly characterized, and understanding of their fungal commu-nities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%), while Basidiomycota was less abundant (14%–24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  1. Soil and Rhizosphere Associated Fungi in Grey Mangroves (Avicennia marina) from the Red Sea - A Metagenomic Approach

    KAUST Repository

    Simões, Marta Filipa

    2015-11-05

    Covering a quarter of the world’s tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea grey mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from grey mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%), while Basidiomycota was less abundant (14%–24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the grey mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  2. Pathways of trace metal uptake in the lugworm Arenicola marina

    Energy Technology Data Exchange (ETDEWEB)

    Casado-Martinez, M.C. [Department of Zoology, Natural History Museum, Cromwell Road, London SW7 5BD (United Kingdom)], E-mail: c.casado-martinez@nhm.ac.uk; Smith, B.D. [Department of Zoology, Natural History Museum, Cromwell Road, London SW7 5BD (United Kingdom); Valls, T.A. del [Unesco UNITWIN Wicop Chair, Department of Physical-Chemistry, University of Cadiz, Poligono Industrial Rio San Pedro s/n, C.P. 11510 Puerto Real, Cadiz (Spain); Rainbow, P.S. [Department of Zoology, Natural History Museum, Cromwell Road, London SW7 5BD (United Kingdom)

    2009-04-02

    Radiotracer techniques were used to determine the rates of trace metal (Ag, Cd and Zn) uptake and elimination (33 psu, 10 deg. C) from water and sediment by the deposit-feeding polychaete Arenicola marina, proposed as a test species for estuarine-marine sediments in whole-sediment toxicity tests. Metal uptake rates from solution increase with increasing dissolved metal concentrations, with uptake rate constants ({+-} SE) (l g{sup -1} d{sup -1}) of 1.21 {+-} 0.11 (Ag), 0.026 {+-} 0.002 (Zn) and 0.012 {+-} 0.001 (Cd). Assimilation efficiencies from ingested sediments were measured using a pulse-chase radiotracer feeding technique in two different lugworm populations, one from a commercial supplier (Blyth, Northumberland, UK) and the other a field-collected population from the outer Thames estuary (UK). Assimilation efficiencies ranged from 2 to 20% for Zn, 1 to 6% for Cd and 1 to 9% for Ag for the Northumberland worms, and from 3 to 22% for Zn, 6 to 70% for Cd and 2 to 15% for Ag in the case of the Thames population. Elimination of accumulated metals followed a two-compartment model, with similar efflux rate constants for Zn and Ag and lower rates of elimination of Cd from the slow pool. Efflux rate constants ({+-} SE) of Zn and Ag accumulated from the dissolved phase were 0.037 {+-} 0.002 and 0.033 {+-} 0.006 d{sup -1} whereas Cd was eliminated with an efflux rate constant one order of magnitude lower (0.003 {+-} 0.002 d{sup -1}). When metals were accumulated from ingested sediments, the efflux rate constants for the slow-exchanging compartment were of the same order of magnitude for the three metals, and of the same order of magnitude as those derived after the dissolved exposure for Zn and Ag (0.042 {+-} 0.004 and 0.056 {+-} 0.012 d{sup -1} for Zn and 0.044 {+-} 0.012 and 0.069 {+-} 0.016 d{sup -1} for Ag for the Northumberland and Thames populations, respectively). Cd accumulated from ingested sediments was eliminated with a rate constant not different from the

  3. Big bacteria

    DEFF Research Database (Denmark)

    Schulz, HN; Jørgensen, BB

    2001-01-01

    A small number of prokaryotic species have a unique physiology or ecology related to their development of unusually large size. The biomass of bacteria varies over more than 10 orders of magnitude, from the 0.2 mum wide nanobacteria to the largest cells of the colorless sulfur bacteria......, Thiomargarita namibiensis, with a diameter of 750 mum. All bacteria, including those that swim around in the environment, obtain their food molecules by molecular diffusion. Only the fastest and largest swimmers known, Thiovulum majus, are able to significantly increase their food supply by motility...... and by actively creating an advective flow through the entire population. Diffusion limitation generally restricts the maximal size of prokaryotic cells and provides a selective advantage for mum-sized cells at the normally low substrate concentrations in the environment. The largest heterotrophic bacteria...

  4. Anaerobic bacteria

    Science.gov (United States)

    Brook I, Goldstein EJ. Diseases caused by non-spore forming anaerobic bacteria. In: Goldman L, Schafer AI, eds. Goldman's Cecil Medicine . 25th ed. Philadelphia, PA: Elsevier Saunders; 2015:chap 297. Stedman's Online ...

  5. A comparative evaluation of biological activities and bioactive compounds of the seagrasses Zostera marina and Zostera noltei from southern Portugal.

    Science.gov (United States)

    Custódio, Luísa; Laukaityte, Simona; Engelen, Aschwin H; Rodrigues, Maria João; Pereira, Hugo; Vizetto-Duarte, Catarina; Barreira, Luísa; Rodríguez, Hortensia; Alberício, Fernando; Varela, João

    2016-01-01

    This work assessed the antioxidant potential, acetylcholinesterase (AChE) inhibition and the in vitro cytotoxic activity of extracts of the seagrasses Zostera marina and Zostera noltei collected from southern Portugal. The total phenolic contents (TPCs), the rosmarinic acid (RA) concentration (HPLC/DAD) and the fatty acid (FA) profile (GC/MS) are also described. Z. marina had the highest TPC, radical scavenging activity against DPPH radicals and copper chelating activity. Z. noltei had metal chelation capacity to copper and iron ions. None of the species was able to inhibit AChE. Both seagrasses had high levels of polyunsaturated FAs. Z. marina significantly and selectively reduced the viability of tumorous neuronal cells. Z. noltei was highly toxic for the three cell lines tested and was selective against hepatocarcinoma cells at the concentration of 100 μg/mL. RA was the main compound identified in Z. marina, but not in Z. noltei.

  6. Determining bathymetric distributions of the eelgrass Zostera marina L. in three turbid estuaries of the eastern North Pacific coast

    Science.gov (United States)

    Improved methods for determining bathymetric distributions of dominant intertidal plants throughout their estuarine range are needed. Zostera marina is a seagrass native to estuaries of the northeastern Pacific and many other sectors of the world ocean. The technique described ...

  7. The effect of wind direction and building surroundings on a marina bay in the Black Sea

    Science.gov (United States)

    Katona, Cosmin; Safta, Carmen Anca

    2017-01-01

    The wind effect has usually a major importance in the marina bay. These environmental sites are an interplay between tourist and commercial activities, requiring a high-detailed and definition studies of the dynamic fluid in the harbor. Computational Fluid Dynamics (CFD) has been used elaborately in urban surroundings research. However, most CFD studies were performed for harbors for only a confined number of wind directions and/or without considering the building surroundings effects. This paper presents the results of different simulations based on various wind flows and the CFD simulation of coupled urban wind flow and general wind directions upon a semi-closed area. Thus the importance of wind effects on the evaluation of the marina bay will be pointed out to achieve a safe and secure mooring at the berth and eventually a good potential of renewable energy for an impending green harbor.

  8. Nematode response to metal, PAHs and organic enrichment in tourist marinas of the Mediterranean Sea.

    Science.gov (United States)

    Moreno, M; Albertelli, G; Fabiano, M

    2009-08-01

    The structure of nematode assemblages was investigated in the sediments of two different tourist marinas in the Mediterranean Sea and related to pollution variables. Nematode densities and generic compositions were determined, as were concentrations of heavy metals, PAHs and organic matter. Results showed different assemblages at the two marinas, with a dominance of the genera Paralongicyatholaimus and Daptonema. Significant correlations between nematodes and concentrations of environmental contaminants were found. In particular, Paralongicyatholaimus showed a significant negative correlation with Cu concentrations and was almost absent at the stations where higher Cu concentrations were found. The presence of sensitive/tolerant nematode genera represents a promising tool to identify areas subjected to a higher level of disturbance and to define the correct environmental management strategy for harbors.

  9. Innovación docente en biología marina

    OpenAIRE

    Guerra-García, José Manuel; Espinosa, Free; García-Gómez, J. Carlos

    2011-01-01

    El inicio del grado de Biología en la Universidad de Sevilla restringe a 4 años la duración de la licenciatura y supone la desaparición de la asignatura optativa “Biología Marina”. Por tanto, el futuro del mantenimiento de la línea docente en Biología Marina en la Universidad de Sevilla, dependerá exclusivamente del futuro desarrollo de un máster. Por ello, en la asignatura de Biología Marina (aún vigente los próximos dos cursos) se están implementando, a modo de ensayo previo ...

  10. [Dendrobium officinale stereoscopic cultivation method].

    Science.gov (United States)

    Si, Jin-Ping; Dong, Hong-Xiu; Liao, Xin-Yan; Zhu, Yu-Qiu; Li, Hui

    2014-12-01

    The study is aimed to make the most of available space of Dendrobium officinale cultivation facility, reveal the yield and functional components variation of stereoscopic cultivated D. officinale, and improve quality, yield and efficiency. The agronomic traits and yield variation of stereoscopic cultivated D. officinale were studied by operating field experiment. The content of polysaccharide and extractum were determined by using phenol-sulfuric acid method and 2010 edition of "Chinese Pharmacopoeia" Appendix X A. The results showed that the land utilization of stereoscopic cultivated D. officinale increased 2.74 times, the stems, leaves and their total fresh or dry weight in unit area of stereoscopic cultivated D. officinale were all heavier than those of the ground cultivated ones. There was no significant difference in polysaccharide content between stereoscopic cultivation and ground cultivation. But the extractum content and total content of polysaccharide and extractum were significantly higher than those of the ground cultivated ones. In additional, the polysaccharide content and total content of polysaccharide and extractum from the top two levels of stereoscopic culture matrix were significantly higher than that of the ones from the other levels and ground cultivation. Steroscopic cultivation can effectively improves the utilization of space and yield, while the total content of polysaccharides and extractum were significantly higher than that of the ground cultivated ones. The significant difference in Dendrobium polysaccharides among the plants from different height of stereo- scopic culture matrix may be associated with light factor.

  11. Molluscs as bioindicators of the regression of a Zostera marina bed in southern Spain

    OpenAIRE

    J. Urra; Narros, J. (Jessica); Mateo-Ramírez, A. (Angel); Marina-Ureña, P. (Pablo); M. ANTIT; J.L. RUEDA; Salas, C.

    2016-01-01

    Seagrass beds are experiencing a sharp decline worldwide and, unfortunately, a continued decrease is expected, mainly due to anthropogenic influence, with negative repercussions for coastal biodiversity. One of these declining seagrasses is Zostera marina L. which is the most widespread in the northern hemisphere (North America, Europe and Asia). One of the most recent observed cases of eelgrass decline occurred in the Special Area of Conservation “Acantilados de Maro - Cerro Gordo” (southern...

  12. La Infantería de Marina, una fuerza para el siglo XXI

    Directory of Open Access Journals (Sweden)

    González Muñoz, Francisco

    2002-10-01

    Full Text Available Not available

    Nuestra Infantería de Marina es la más antigua del mundo. Sus orígenes se remontan al Tercio de Ñapóles de 1537, y desde entonces sus fuerzas han mantenido su tradición naval y expedicionaria con una permanente vinculación a la Armada. Tras una referencia histórica a las diferentes campañas en que ha participado la Infantería de Marina, el que fue su Comandante General durante los últimos cuatro años nos introduce en las vicisitudes y proceso de evolución de este Cuerpo como componente esencial de la Fuerza Anfibia de la Flota, destacando su versatilidad y capacidad de respuesta a las exigencias de hoy día para actuar como vanguardia de la proyección del poder naval en los nuevos escenarios estratégicos que se nos presentan. El artículo es una excelente síntesis para quien desee conocer qué.esy cómo opera la Infantería de Marina, cuáles son sus capacidades, medios, organización y estructura, y cómo está adaptándose para afrontar los desafíos del futuro a medio plazo.

  13. Contrasting oxygen dynamics in the freshwater isoetid Lobelia dortmanna and the marine seagrass Zostera marina

    DEFF Research Database (Denmark)

    Sand-Jensen, Kaj; Pedersen, Ole; Binzer, Thomas

    2005-01-01

    of the sediment, and aquatic plants differ in aerenchymal volume and resistance to O2 diffusion through the plant and across leaf and root surfaces. The hypothesis that the freshwater isoetid Lobelia dortmanna and the marine seagrass Zostera marina should display pronounced contrasts in intra-plant O2 dynamics......-water, and the water column in the field. Manipulation of water column O2 in the laboratory was also carried out. KEY RESULTS: It was found that intra-plant transport of O2 between leaf and root tips takes place more readily in L. dortmanna than in Z. marina due to shorter distances and greater cross......-sections of the aerenchyma. The major exchange of O2 across roots of L. dortmanna can be accounted for by small intra-plant resistances to diffusion, larger root than leaf surfaces, and greater radial diffusive resistance of leaves than roots. In contrast, the major O2 exchange across leaves than roots of Z. marina can...

  14. Habitat suitability analysis of eelgrass Zostera marina L. in the subtidal zone of Xiaoheishan Island

    Science.gov (United States)

    Zhou, Jian; Wang, Qixiang; Zhao, Wenxi; Yu, Daode; Guan, Shuguang

    2016-01-01

    We present a GIS-based habitat suitability index (HSI) model to identify suitable areas for Zostera marina L. restoration in the subtidal zone of Xiaoheishan Island. The controlling factors in the model, in order of importance, are Secchi depth, sediment composition, water temperature, salinity, current velocity, water depth and nutrient quality. Specific factor piecewise functions have been used to transform parameter values into normalized quality indexes. The weight of each factor was defined using expert knowledge and the analytic hierarchy process (AHP) method. All of the data thus obtained were interpolated using the inverse distance weighted (IDW) interpolation method to create maps for the entire region. In this study, the analysis of habitat suitability in the subtidal zone of Xiaoheishan Island was conducted for four seasons. According to the GIS-based HSI model, the optimal habitat of Zostera marina L. appears in spring, although habitat remains suitable all year round. On the whole, the optimum site for eelgrass restoration is located in the eastern region, followed by the western and southern regions. We believe that the GIS-based HSI model could be a promising tool to select sites for Zostera marina L. restoration and could also be applicable in other types of habitat evaluation.

  15. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

    Science.gov (United States)

    Alzubaidy, Hanin; Essack, Magbubah; Malas, Tareq B; Bokhari, Ameerah; Motwalli, Olaa; Kamanu, Frederick Kinyua; Jamhor, Suhaiza Ahmad; Mokhtar, Noor Azlin; Antunes, André; Simões, Marta Filipa; Alam, Intikhab; Bougouffa, Salim; Lafi, Feras F; Bajic, Vladimir B; Archer, John A C

    2016-02-01

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in 'metabolism of aromatic compounds', 'mobile genetic elements', 'potassium metabolism' and 'pathways that utilize osmolytes' in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  16. Characterisation of esterases as potential biomarkers of pesticide exposure in the lugworm Arenicola marina (Annelida: Polychaeta)

    Energy Technology Data Exchange (ETDEWEB)

    Hannam, Marie L. [Ecotoxicology and Stress Biology Research Centre, School of Biological Sciences, University of Plymouth, Drake Circus, Plymouth, Devon, PL4 8AA (United Kingdom)], E-mail: marie.hannam@plymouth.ac.uk; Hagger, Josephine A.; Jones, Malcolm B.; Galloway, Tamara S. [Ecotoxicology and Stress Biology Research Centre, School of Biological Sciences, University of Plymouth, Drake Circus, Plymouth, Devon, PL4 8AA (United Kingdom)

    2008-03-15

    Here, we identify and characterise cholinesterase (ChE) and carboxylesterase (CbE) activities in the body tissues of the sediment dwelling worm Arenicola marina. Exposure to the organophosphorus pesticide azamethiphos yielded an in vitro IC{sub 50} of 5 {mu}g l{sup -1} for propionylcholinesterase (PChE). PChE was significantly inhibited in vivo after a 10 day exposure to 100 {mu}g l{sup -1} azamethiphos, equivalent to the recommended aquatic application rate (ANOVA; F = 2.75, P = 0.033). To determine sensitivity to environmental conditions, A. marina were exposed for 10 days to field collected sediments. PChE activity was significantly lower in worms exposed to sediments from an estuary classified to be at high risk from point source pollution by the UK Environment Agency (ANOVA; F = 15.33, P < 0.001). Whilst causality cannot be directly attributed from these latter exposures, they provide an important illustration of the potential utility of esterase activity as a biomarker of environmental quality in this ecologically relevant sentinel species. - This paper provides a preliminary characterisation of esterase enzyme activities in the tissues and body fluids of the sediment dwelling worm Arenicola marina and explores their potential use as biomarkers of organophosphorus pesticide exposure in the marine environment.

  17. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

    KAUST Repository

    Alzubaidy, Hanin S.

    2015-11-10

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in ‘metabolism of aromatic compounds’, ‘mobile genetic elements’, ‘potassium metabolism’ and ‘pathways that utilize osmolytes’ in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  18. Cultivating strategic thinking skills.

    Science.gov (United States)

    Shirey, Maria R

    2012-06-01

    This department highlights change management strategies that may be successful in strategically planning and executing organizational change initiatives. With the goal of presenting practical approaches helpful to nurse leaders advancing organizational change, content includes evidence-based projects, tools, and resources that mobilize and sustain organizational change initiatives. In this article, the author presents an overview of strategic leadership and offers approaches for cultivating strategic thinking skills.

  19. Evanescent cultivation of photosynthetic bacteria on thin waveguides

    Science.gov (United States)

    Pierobon, S. C.; Ooms, M. D.; Sinton, D.

    2014-04-01

    Waveguides with thicknesses similar to biofilms (10-100 µm) provide an opportunity to improve the bioenergy density of biofilm photobioreactors, avoiding the fundamental light- and mass-transport productivity limitations of planktonic photobioreactors. This report investigates the biofilm growth of a mutant of Synechococcus elongatus (PCC 7942) in evanescent light fields that can be scaled over large planar areas. In this study, areas of 7.2 cm2 are illuminated via frustrated total internal reflections on planar waveguides. The resulting photosynthetic biofilm growth showed resilience to surface intensities exceeding photosynthetic limits and a more uniform cell density distribution (1.0 ± 0.3 × 109 mL-1) than predicted from surface light distribution profiles. These results indicate potential for larger area biofilms using the uniform lighting conditions identified. The combination of evanescent illumination with biofilms indicates a modular reactor cell density on the order of 108 mL-1, representing a two orders of magnitude improvement over current facility architectures, with significant potential for further improvement through denser biofilms.

  20. Antifouling activity by sea anemone (Heteractis magnifica and H. aurora extracts against marine biofilm bacteria Actividades antiincrustantes de las extractos de las anémonas marinas Heteractis magnifica y H. aurora frente a biofilm de bacterias marinas

    Directory of Open Access Journals (Sweden)

    Subramanian Bragadeeswaran

    2011-07-01

    Full Text Available Sea anemones (Actiniaria are solitary, ocean-dwelling members of the phylum Cnidaria and the class Anthozoa. In this study, we screened antibacterial activity of two benthic sea anemones (Heteractis magnifica and H. aurora collected from the Mandapam coast of southeast India. Crude extracts of the sea anemone were assayed against seven bacterial biofilms isolated from three different test panels. The crude extract of H. magnifica showed a maximum inhibition zone of 18 mm against Pseudomonas sp. and Escherichia coli and a minimum inhibition zone of 3 mm against Pseudomonas aeruginosa, Micrococcus sp., and Bacillus cerens for methanol, acetone, and DCM extracts, respectively. The butanol extract of H. aurora showed a maximum inhibition zone of 23 mm against Vibrio parahaemolyticus, whereas the methanol extract revealed a minimum inhibition zone of 1 mm against V. parahaemolyticus. The present study revealed that the H. aurora extracts were more effective than those of H. magnifica and that the active compounds from the sea anemone can be used as antifouling compounds.Las anémonas de mar (Actiniaria son solitarias, habitantes oceánicos del phylum Cnidaria y de la clase Anthozoa. En este estudio se determina la actividad antibacteriana de dos anémonas bentónicas Heteractis magnifica y H. aurora recolectadas en la costa de Mandapam, sudeste de India. Los extractos crudos de estas anémonas fueron ensayados frente a siete biofilms bacterianos aislados de tres paneles de control distintos. El extracto crudo de la anémona H. magnifica mostró una zona inhibición máxima de 18 mm contra Psudomonas sp. y Escherichia coli y la zona de inhibición mínima de 3 mm fue encontrada frente a Pseudomonas aeruginosa, Micrococus sp. y Bacillus cerens de extractos de metanol, acetona y DCM respectivamente. El extracto de butanol de la anémona H. magnifica mostró una zona de inhibición máxima de 23 mm frente a Vibrio parahemolyticus, mientras que con el estracto de metanol se observó una zona de inhibición mínima de 1 mm frente a V. parahemolyticus. El presente estudio mostró que los extractos H. aurora son más efectivos que los de H. magnifica y que los compuestos activos de las anémonas de mar pueden ser usados como compuestos anti-incrustantes.

  1. Rhizosphere O2 dynamics in young Zostera marina and Ruppia maritima

    DEFF Research Database (Denmark)

    Jovanovic, Zeljko; Pedersen, Mia Østergaard; Larsen, Morten

    2015-01-01

    Zostera marina and Ruppia maritima often share the same habitat, but R. maritima appears more resistant to environmental stress. We investigated the impact of light intensity and water column O2 concentrations on radial oxygen loss (ROL), in young specimens of Z. marina and R. maritima. Planar...

  2. A tale of two seagrasses: Comparing the science and management of Zostera marina and Zostera japonica in the Pacific Northwest - CERF

    Science.gov (United States)

    On the Pacific coast of North America, at least two congeners of Zostera occur: native Z. marina, and introduced, Z. japonica. Z. marina is protected by State and Federal laws as essential fish habitat. Z. japonica is considered “invasive” and therefore, ecologicall...

  3. Constitution and energetics of photosystem I and photosystem II in the chlorophyll d-dominated cyanobacterium Acaryochloris marina.

    Science.gov (United States)

    Tomo, Tatsuya; Allakhverdiev, Suleyman I; Mimuro, Mamoru

    2011-01-01

    This mini review presents current topics of discussion about photosystem (PS) I and PS II of photosynthesis in the Acaryochloris marina. A. marina is a photosynthetic cyanobacterium in which chlorophyll (Chl) d is the major antenna pigment (>95%). However, Chl a is always present in a few percent. Chl d absorbs light with a wavelength up to 30 nm red-shifted from Chl a. Therefore, the chlorophyll species of the special pair in PS II has been a matter of debate because if Chl d was the special pair component, the overall energetics must be different in A. marina. The history of this field indicates that a purified sample is necessary for the reliable identification and characterization of the special pair. In view of the spectroscopic data and the redox potential of pheophytin, we discuss the nature of special pair constituents and the localization of the enigmatic Chl a.

  4. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    Directory of Open Access Journals (Sweden)

    Ahmad Herison

    2014-04-01

    Full Text Available Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina  becomes important as wave attenuation,  a form of abrasion antidote. Transect-Square and Spot-Check methods were used to determine the existing condition of A.marina mangrove forests. Autocad program, coordinate converter, Google Earth, Google Map, and Arc View were applied in process of making mangrove distribution map. In western of research location exactly at Station 1 and Station 2, the density value of mangrove was 450 and 825 tree ha-1, respectively with  sparse category because they were contaminated by waste and litter. In eastern of research location namely Station 3, Station 4, and Station 5 the mangroves grow well with density value of 650 (sparse, 1,500 (very dense, and 1,200 tree ha-1 (fair, respectively, eventhough the contamination still happened. The mangrove forests around the stations do not function as wave attenuation because there were many waterfront constructions which have replaced the function of mangrove forests to damp the wave. In short, it can be stated that the mangrove's function has changed in a case of wave attenuation. The function of mangrove forests is not determined by mangrove forest density but it is determined by mangrove's free position.Keywords: Avicennia marina, mangrove, wave attenuation, waterfront constructions

  5. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions.

    Science.gov (United States)

    Guo, Zhiling; Zhang, Huan; Liu, Sheng; Lin, Senjie

    2013-10-21

    Heterotrophic dinoflagellates are prevalent protists in marine environments, which play an important role in the carbon cycling and energy flow in the marine planktonic community. Oxyrrhismarina (Dinophyceae), a widespread heterotrophic dinoflagellate, is a model species used for a broad range of ecological, biogeographic, and evolutionary studies. Despite the increasing research effort on this species, there lacks a synthesis of the existing data and a coherent picture of this organism. Here we reviewed the literature to provide an overview of what is known regarding the biology of O. marina, and identify areas where further studies are needed. As an early branch of the dinoflagellate lineage, O. marina shares similarity with typical dinoflagellates in permanent condensed chromosomes, less abundant nucleosome proteins compared to other eukaryotes, multiple gene copies, the occurrence of trans-splicing in nucleus-encoded mRNAs, highly fragmented mitochondrial genome, and disuse of ATG as a start codon for mitochondrial genes. On the other hand, O. marina also exhibits some distinct cytological features (e.g., different flagellar structure, absence of girdle and sulcus or pustules, use of intranuclear spindle in mitosis, presence of nuclear plaque, and absence of birefringent periodic banded chromosomal structure) and genetic features (e.g., a single histone-like DNA-associated protein, cob-cox3 gene fusion, 5' oligo-U cap in the mitochondrial transcripts of protein-coding genes, the absence of mRNA editing, the presence of stop codon in the fused cob-cox3 mRNA produced by post-transcriptional oligoadenylation, and vestigial plastid genes). The best-studied biology of this dinoflagellate is probably the prey and predators types, which include a wide range of organisms. On the other hand, the abundance of this species in the natural waters and its controlling factors, genome organization and gene expression regulation that underlie the unusual cytological and

  6. Antifungal Effect of the Aqueous and Ethanolic Avicennia marina Extracts on Alternaria citri and Penicillium digitatum

    Directory of Open Access Journals (Sweden)

    Behrooz Alizadeh Behbahani

    2016-02-01

    Full Text Available Background Plants have a great potential for producing new drugs of great benefit to mankind. There are many approaches to the search for new biologically active principles in higher plants. Objectives The aim of this study was to determine antifungal effect of the aqueous and ethanolic extracts of Avicennia marina on Penicillium digitatum and Alternaria citri in vitro. Materials and Methods In this experimental study, antimicrobial effects of extract were determined by screening antimicrobial activity and disk agar diffusion test in 20, 40, 60 and 80 mg/mL concentration of the extract against P. digitatum and A. citri. Minimum inhibitory concentration (MIC and minimum fungicidal concentration (MFC were determined by incorporating various concentrations of extracts in Sabouraud dextrose agar (SDA in tubes against P. digitatum and A. citri. The data were analyzed using one way analysis of variance (ANOVA using SPSS-17. Results The results indicate that extracts of A. marina mostly had been effective on P. digitatum and have the least impact on A. citri. The results show that the ethanol extract of mangrove leaf with antimicrobial activity method in 2 mg/mL, were inhibited the growth of P. digitatum and A. citri. In disk agar diffusion test the mentioned extract were shown inhibition effect on pathogen molds growth (P < 0.05. Conclusions Ethanolic extract compared to the aqueous extract was more effective and has a greater inhibition effect. The results of this study showed that the extract of A. marina has antifungal properties that justify their traditional use as medicinal plants.

  7. Photosystem Trap Energies and Spectrally-Dependent Energy-Storage Efficiencies in the Chl d-Utilizing Cyanobacterium, Acaryochloris Marina

    Science.gov (United States)

    Mielke, Steven P.; Kiang, Nancy Y.; Blankenship, Robert E.; Mauzerall, David

    2012-01-01

    Acaryochloris marina is the only species known to utilize chlorophyll (Chl) d as a principal photopigment. The peak absorption wavelength of Chl d is redshifted approx. 40 nm in vivo relative to Chl a, enabling this cyanobacterium to perform oxygenic phototrophy in niche environments enhanced in far-red light. We present measurements of the in vivo energy-storage (E-S) efficiency of photosynthesis in A. marina, obtained using pulsed photoacoustics (PA) over a 90-nm range of excitation wavelengths in the red and far-red. Together with modeling results, these measurements provide the first direct observation of the trap energies of PSI and PSII, and also the photosystem-specific contributions to the total E-S efficiency. We find the maximum observed efficiency in A. marina (40+/-1% at 735 nm) is higher than in the Chl a cyanobacterium Synechococcus leopoliensis (35+/-1% at 690 nm). The efficiency at peak absorption wavelength is also higher in A. marina (36+/-1% at 710 nm vs. 31+/-1% at 670 nm). In both species, the trap efficiencies are approx. 40% (PSI) and approx. 30% (PSII). The PSI trap in A. marina is found to lie at 740+/-5 nm, in agreement with the value inferred from spectroscopic methods. The best fit of the model to the PA data identifies the PSII trap at 723+/-3 nm, supporting the view that the primary electron-donor is Chl d, probably at the accessory (ChlD1) site. A decrease in efficiency beyond the trap wavelength, consistent with uphill energy transfer, is clearly observed and fit by the model. These results demonstrate that the E-S efficiency in A. marina is not thermodynamically limited, suggesting that oxygenic photosynthesis is viable in even redder light environments.

  8. On the cultivation of free-living marine and estuarine nematodes

    Science.gov (United States)

    Moens, T.; Vincx, M.

    1998-06-01

    Although a large body of literature exists on the systematics and ecology of free-living marine and brackish-water nematodes, key questions on the nature and magnitude of interactions between nematodes and other organisms in the benthos remain unanswered. Relatively few authors have investigated live nematodes in food web studies or in experiments dealing with the nematodes’ response to a varying environment. It is mainly for the latter purpose that attempts have been made to maintain, rear and cultivate selected species. This paper describes the methodology used for the maintenance, rearing, and eventual permanent agnotobiotic cultivation of a variety of estuarine nematodes. Spot plates, where small samples of sediment or macrophyte material are inoculated on a sloppy agar layer, have been used for the purpose of maintenance and initial cultivation. Those species that reproduce on spot plates are then selected for monospecific cultivation on agar layers with different nutrient enrichments and with micro-organisms cotransferred from the spot plates as food. Mixtures of bacto and nutrient agar prepared in artificial seawater were specifically suitable for the xenic cultivation of nine bacterivorous and, when supplied with Erdschreiber nutrients, two algivorous/bacterivorous nematode species. Up to three generations of five other nematode species have been reared under laboratory conditions, and several more were kept alive and active for variable periods of time on agar. Generation times observed on spot plates for Adoncholaimus fuscus and Oncholaimus oxyuris were substantially shorter than previously published estimates and suggest a correspondingly higher predatory and scavenging potency for these and related enoplids. A procedure for the long-term storage of nematodes at -80°C with glycerol as a cryoprotectant was successfully used for Diplolaimella dievengatensis, Panagrolaimus sp. 1, and Pellioditis marina, but not for Diplolaimelloides meyli. The authors

  9. Seasonal acclimation in metabolism reduces light requirements of eelgrass (Zostera marina)

    DEFF Research Database (Denmark)

    Stæhr, Peter A.; Borum, Jens

    2011-01-01

    We investigated the ability of eelgrass (Zostera marina) to adjust light requirements to seasonal changes in temperature, light and nutrient conditions through changes in metabolism, pigment and nutrient content. In agreement with expectations we found that rates of respiration and light saturated...... photosynthesis of summer acclimated plants peaked at higher temperatures (5 °C and 2 °C higher, respectively), and were lower than of winter acclimated plants, both at sub- and supra-optimal temperatures. Moreover respiration rates were generally more sensitive to increasing temperatures than photosynthetic...

  10. Biodisponibilidad y especiación de arsénico en las algas marinas

    OpenAIRE

    García Sartal, Cristina

    2013-01-01

    Las algas, desde un punto de vista alimenticio, constituyen una fuente de proteínas, aminoácidos esenciales, vitaminas, lípidos y minerales. Sin embargo, las algas también pueden acumular elementos no esenciales procedentes del agua marina circundante, entre ellos, el arsénico, elemento ampliamente reconocido por su toxicidad. La toxicidad del arsénico depende fundamentalmente de su especiación, resultando más toxicas las especies inorgánicas de arsénico que sus correspondie...

  11. Mecanismos de toxicidad y permeabilidad transepitelial de toxinas marinas y de agua dulce

    OpenAIRE

    Fernández Martínez, Diego Alberto

    2015-01-01

    La presente tesis doctoral aporta datos experimentales que permiten comprender mejor los efectos que las toxinas marinas Palitoxina (PLTX), Ácido Okadaico (OA), Dinofisistoxina 1 y 2 (DTX-1 y DTX-2) y la toxina de agua dulce Cilindrospermopsina (CYN), pueden ejercer sobre la salud humana y animal. Con esta finalidad se investiga la citotoxicidad y las alteraciones citomorfológicas que estos compuestos desencadenan en células intestinales, hepáticas y nerviosas. También se evalú...

  12. Foleyellides rhinellae sp. nov. (Nematoda, Onchocercidae) a new filaria parasitizing Rhinella marina (Anura, Bufonidae) in Mexico.

    Science.gov (United States)

    García-Prieto, Luis; Ruiz-Torres, Nallely; Osorio-Sarabia, David; Merlo-Serna, Aldo

    2014-09-01

    A new nematode species, Foleyellides rhinellae sp. nov. (Onchocercidae), is described from specimens found in the body cavity of the cane toad, Rhinella marina (Linnaeus) (Anura, Bufonidae), in the Laguna de Coyuca, Guerrero, in the Pacific slope of Mexico. The new species differs from the other nine species of Foleyellides by infecting bufonid anurans and by the number and arrangement of caudal papillae. Other distinguishing feature of the new species is the size of the left spicule (0.16-0.23 long), the smallest recorded among the species included in the genus. Foleyellides rhinellae sp. nov. is the second known species of the genus recorded from amphibians of Mexico.

  13. Temporal and spatial dynamics of ephemeral macroalgal communities in eelgrass, Zostera marina, beds

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Pedersen, Morten Foldager; Olesen, Birgit;

    in algal cover was inversely correlated with the cover of eelgrass, Zostera marina, suggesting that algae were retained by the eelgrass leaves. At the larger spatial scale algal cover was less variable and significant changes occurred just a few times during the study periods. Variability was caused either...... by algal growth, as indicated by a steady increase in cover, or by physical forces moving large aggregations of algae into or out of the study area leading to significant changes in cover within few days. Thus, in shallow coastal ecosystems aggregations of ephemeral macroalgae can be highly dynamic, algae...

  14. Effects of filamentous macroalgae mats on growth and survival of eelgrass, Zostera marina, seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Olesen, Birgit; Krause-Jensen, Dorte

    2012-01-01

    A laboratory experiment was conducted to assess the effect of filamentous algae mats on the performance of seedlings of the eelgrass, Zostera marina. The seedlings were covered by three levels (3, 6 and 9 cm) of natural (Chaetomorpha linum) and imitation algae mats and it was hypothesized...... that the effects of the natural algae on seedling growth may be more severe because of the metabolic demands of the algae. Results show that coverage by both C. linum and imitation algae significantly reduced seedling growth and increased allocation of resources to above ground tissues. No clear effects of algae...

  15. Ritos de passagem contemporâneos em Marina Colasanti: passagens e ressurgências

    OpenAIRE

    Faccin, Fernanda Pina dos Reis

    2013-01-01

    Para a presente dissertação selecionaram-se quatro contos do livro O leopardo é um animal delicado, de Marina Colasanti: Menina de vermelho a caminho da Lua ; O leopardo é um animal delicado ; As regras do jogo e Sem que seja de joelhos . Os contos elencados apresentam, em suas narrativas, ritos de passagem que se encontram em contextos distintos, embora compartilhem da mesma dinâmica metamórfica, caracterizada pelas passagens, pois há uma correspondência entre as diversas modalidades de...

  16. Chasing the Intangible: a Conversation on Theatre, Language, and Artistic Migrations with Irish Playwright Marina Carr

    OpenAIRE

    Valentina Rapetti

    2014-01-01

    Offally born Marina Carr is amongst the most prolific, influential and internationally renowned Irish playwrights of our times. Since her debut on the avant-garde side of the Dublin theatre scene in the late Eighties, she has had  seventeen plays professionally produced, both in and outside Ireland. Her earlier work is influenced by Samuel Beckett’s Absurdist drama, while in her most mature and recent plays she draws on both classical and Irish mythology, Greek tragedies and Shakespeare’s poe...

  17. Guía de las especies introducidas marinas y costeras de Colombia.

    OpenAIRE

    2011-01-01

    Este libro tiene como objetivo presentar una lista ilustrada preliminar de las especies identificadas y registradas como exóticas sobre los ambientes marino-costeros de Colombia hasta el momento, o de las cuales se tiene alguna evidencia de su presencia, con el fin de aportar información sobre el estado de la biodiversidad marina colombiana, contribuyendo con información de línea base que servirá para la elaboración de planes de contingencia ante posibles amenazas. Así mismo, ofrece una lista...

  18. Recent advances in periodontal microbiology: An update on cultivation techniques

    Directory of Open Access Journals (Sweden)

    Kishore G Bhat

    2014-01-01

    Full Text Available Microbial members of the subgingival plaque community play a major role in the initiation and progression of periodontal diseases. Majority of these bacteria are anaerobic in nature and several anaerobic systems have been used for their cultivation. Among them anaerobic jars are the most popular and are routinely used for the detection of periodontal pathogens from clinical samples. Despite best efforts, a significant portion of oral microbes have not yet been cultivated and several hypotheses have been put forth to explain this anomaly. This has led to renewed efforts to cultivate the oral bacteria so far identified only by their molecular signatures resulting in improvisation of existing culture techniques and devising novel methods of isolation. Several devices have been used on environmental samples successfully: One method called "minitrap" has been successfully adapted to oral cavity and has shown great promise in isolation of not yet cultivated oral bacterial species. These newer techniques are sure to shed more light on the role of microbes in the etiology of periodontal diseases.

  19. Morphological characterization of Eustrongylides sp. larvae (Nematoda, Dioctophymatoidea) parasite of Rhinella marina (Amphibia: Bufonidae) from Eastern Amazonia.

    Science.gov (United States)

    Melo, Francisco Tiago de Vasconcelos; Melo, Caroline do Socorro Barros; Nascimento, Luciana de Cássia Silva do; Giese, Elane Guerreiro; Furtado, Adriano Penha; Santos, Jeannie Nascimento Dos

    2016-06-07

    Absctract Eustrongylides spp. nematodes have birds as final hosts and uses other vertebrates as intermediate/paratenic host (fish, amphibians and reptiles) and have zoonotic potential. In amphibians, the larvae may be located in the subcutaneous tissues, liver and mesentery, between the muscle fibres, especially in the lower limbs. Rhinella marina, which is widely observed in Brazil, has exhibited complex diversity in its helminth fauna, reflecting the unique habitat of the Amazon biome. For the first time, this study describes the morphological aspects of third-stage larvae of Eustrongylides sp. in Rhinella marina from Santa Cruz do Ararí, Marajó Archipelago, Eastern Amazonia, using light and scanning electron microscopy.

  20. 红树林秋茄、桐花树、白骨壤混交生长效果研究%Study on the Growth Effect of Mangrove Kandelia candel,Aegiceras corniculatum and Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    陈世勇

    2014-01-01

    The cultivation of Kandelia candel,Aegiceras corniculatum and Avicennia marina in the beach, through the management of 11a,to investigate and analyze the volume growth,the Mangrove Kandelia can-del,Aegiceras corniculatum,Avicennia marina trees. The results show that:Kandelia candel,Aegiceras cornic-ulatum,Avicennia marina,mixed forest tree growth,than Kandelia candel,Aegiceras corniculatum,Avicennia marina,pure forest growth effect is good. Mixed forest trees tree height,DBH,height under branch,crown,re-spectively than those of pure forest grown trees tall and 7.69%,7.5%,11.11%,2.17%,11.41%,6.67% in di-ameter,branch 2.01%,tall 10.95%,8.57%,5%,10.53%,13.50% crown. Kandelia candel,Aegiceras cornicula-tum,Avicennia marina in the shallow water,tree growth,than the tide in forest growth effect is good,the prop roots,plate-like roots,absorb water pollutants can be strong,salts,row to plants in vitro through photo-synthesis,can go to nitrogen and phosphorus and other pollutants,purification of sea environment,anti wave support the waves,coastal erosion,to protect the ecological environment effect.%在海滩涂上栽培秋茄、桐花树、白骨壤,经过11a的经营管理,对红树林秋茄、桐花树、白骨壤林木的生长量进行调查分析。结果表明:红树林秋茄、桐花树、白骨壤混交林的林木生长,均比秋茄、桐花树、白骨壤纯林的林木生长效果好。混交林生长的林木树高、胸径、枝下高、树冠,分别比纯林林木生长的树木高大7.69%、7.5%、11.11%,胸径粗2.17%、11.41%、6.67%,枝下高大2.01%、10.95%、8.57%,冠幅大5.00%、10.53%、13.50%。红树林秋茄、桐花树、白骨壤林木在浅潮位生长,比中潮位林木生长效果好,支柱根大、板状根系发达,吸收海水污染物强,能将盐类物质通过叶片光合作用排到植物体外,可去氮和磷等污染物,净化海边环境,防浪护堤,防止海岸侵蚀,起到保护生态环境作用。

  1. Antibacterial activity of some medicinal mangroves against antibiotic resistant pathogenic bacteria

    Directory of Open Access Journals (Sweden)

    Abeysinghe P

    2010-01-01

    Full Text Available The antibacterial activity of the leaves and bark of mangrove plants, Avicennia marina, A. officinalis, Bruguiera sexangula, Exoecaria agallocha, Lumnitzera racemosa, and Rhizophora apiculata was evaluated against antibiotic resistant pathogenic bacteria, Staphylococcus aureus and Proteus sp. Soxhlet extracts of petroleum ether, ethyl acetate, ethanol and water were prepared and evaluated the antibacterial activity using agar diffusion method. Most of the plant extracts showed promising antibacterial activity against both bacterial species. However, higher antibacterial activity was observed for Staphylococcus aureus than Proteus sp. The highest antibacterial activity was shown by ethyl acetate of mature leaf extracts of E. agallocha for Staphylococcus aureus. All ethyl acetate extracts showed higher inhibition against S. aureus while some extracts of chloroform, ethyl acetate and ethanol gave inhibition against Proteus sp. None of the petroleum ether and aqueous extracts showed inhibition against Proteus sp. All fresh plant materials did also show more antibacterial activity against both bacterial strains than did dried plant extracts. Antibacterial activity of fresh and dried plant materials reduced for both bacterial strains with time after extraction. Since L. racemosa and A. marina gave the best inhibition for bacterial species, they were used for further investigations. Charcoal treated plant extracts of L. racemosa and A. marina were able to inhibit both bacterial strains more than those of untreated plant extracts. Phytochemical screening of mature leaf, bark of L. racemosa and leaf extracts of A. marina has been carried out and revealed that leaf and bark contained alkaloids, steroids, triterpenoids and flavonoids. None of the above extracts indicate the presence of saponins and cardiac glycosides. Separated bands of extracts by TLC analysis showed antibacterial activity against S. aureus.

  2. Plant growth and cultivation.

    Science.gov (United States)

    Podar, Dorina

    2013-01-01

    There is a variety of methods used for growing plants indoor for laboratory research. In most cases plant research requires germination and growth of plants. Often, people have adapted plant cultivation protocols to the conditions and materials at hand in their own laboratory and growth facilities. Here I will provide a guide for growing some of the most frequently used plant species for research, i.e., Arabidopsis thaliana, barley (Hordeum vulgare) and rice (Oryza sativa). However, the methods presented can be used for other plant species as well, especially if they are related to the above-mentioned species. The presented methods include growing plants in soil, hydroponics, and in vitro on plates. This guide is intended as a starting point for those who are just beginning to work on any of the above-mentioned plant species. Methods presented are to be taken as suggestive and modification can be made according to the conditions existing in the host laboratory.

  3. Glass bead cultivation of fungi

    DEFF Research Database (Denmark)

    Droce, Aida; Sørensen, Jens Laurids; Giese, H.

    2013-01-01

    Production of bioactive compounds and enzymes from filamentous fungi is highly dependent on cultivation conditions. Here we present an easy way to cultivate filamentous fungi on glass beads that allow complete control of nutrient supply. Secondary metabolite production in Fusarium graminearum and...

  4. Micrometeorological principles of protected cultivation

    Science.gov (United States)

    Protected cultivation is a broad term commonly used among producers of specialty crops. Techniques can range from complex fixed structures to field site selection, to straightforward cultural practices in the field. This introduction to the ASHS workshop "Protected cultivation for fruit crops" consi...

  5. Rhizosphere Bacteria

    Directory of Open Access Journals (Sweden)

    N.V. Feoktistova

    2016-06-01

    Full Text Available The review deals with the analysis of modern literature data on rhizosphere bacteria and their role in plant life. The structure of rhizosphere has been characterized. The role of plants as the centers of formation of microbial communities has been shown. Data on the main groups of microorganisms inhabiting the rhizosphere have been provided. The associative relationship between rhizobacteria and partner plants has been investigated. The modern concept of holobiont defined as the whole host plant organism and microorganisms associated with it has been reviewed. The role of rhizobacteria in the processes of nitrogen fixation has been discussed in detail. The mechanisms of direct stimulation of plant growth by biosynthesis of phytohormones, improvement of phosphorus and nitrogen nutrition, increase in resistance to stress, and stimulation mediated by antagonism against pathogenic microorganisms have been analyzed. The criteria for selection of rhizobacteria for practical purposes have been discussed.

  6. Phenology and Growth dynamics of Avicennia marina in the Central Red Sea

    Science.gov (United States)

    Almahasheer, Hanan; Duarte, Carlos M.; Irigoien, Xabier

    2016-11-01

    The formation of nodes, stem elongation and the phenology of stunted Avicennia marina was examined in the Central Red Sea, where Avicennia marina is at the limit of its distribution range and submitted to extremely arid conditions with salinity above 38 psu and water temperature as high as 35° C. The annual node production was rather uniform among locations averaging 9.59 node y‑1, which resulted in a plastocron interval, the interval in between production of two consecutive nodes along a stem, of 38 days. However, the internodal length varied significantly between locations, resulting in growth differences possibly reflecting the environmental conditions of locations. The reproductive cycle lasted for approximately 12 months, and was characterized by peak flowering and propagule development in November and January. These phenological observations provide a starting point for research and restoration programs on the ecology of mangroves in the Central Red Sea, while the plastochrone index reported here would allow calculations of the growth and production of the species from simple morphological measurements.

  7. Effects of microplastic on fitness and PCB bioaccumulation by the lugworm Arenicola marina (L.).

    Science.gov (United States)

    Besseling, Ellen; Wegner, Anna; Foekema, Edwin M; van den Heuvel-Greve, Martine J; Koelmans, Albert A

    2013-01-02

    It has been speculated that marine microplastics may cause negative effects on benthic marine organisms and increase bioaccumulation of persistent organic pollutants (POPs). Here, we provide the first controlled study of plastic effects on benthic organisms including transfer of POPs. The effects of polystyrene (PS) microplastic on survival, activity, and bodyweight, as well as the transfer of 19 polychlorinated biphenyls (PCBs), were assessed in bioassays with Arenicola marina (L.). PS was pre-equilibrated in natively contaminated sediment. A positive relation was observed between microplastic concentration in the sediment and both uptake of plastic particles and weight loss by A. marina. Furthermore, a reduction in feeding activity was observed at a PS dose of 7.4% dry weight. A low PS dose of 0.074% increased bioaccumulation of PCBs by a factor of 1.1-3.6, an effect that was significant for ΣPCBs and several individual congeners. At higher doses, bioaccumulation decreased compared to the low dose, which however, was only significant for PCB105. PS had statistically significant effects on the organisms' fitness and bioaccumulation, but the magnitude of the effects was not high. This may be different for sites with different plastic concentrations, or plastics with a higher affinity for POPs.

  8. Microplastics are taken up by mussels (Mytilus edulis) and lugworms (Arenicola marina) living in natural habitats.

    Science.gov (United States)

    Van Cauwenberghe, Lisbeth; Claessens, Michiel; Vandegehuchte, Michiel B; Janssen, Colin R

    2015-04-01

    We studied the uptake of microplastics under field conditions. At six locations along the French-Belgian-Dutch coastline we collected two species of marine invertebrates representing different feeding strategies: the blue mussel Mytilus edulis (filter feeder) and the lugworm Arenicola marina (deposit feeder). Additional laboratory experiments were performed to assess possible (adverse) effects of ingestion and translocation of microplastics on the energy metabolism (cellular energy allocation) of these species. Microplastics were present in all organisms collected in the field: on average 0.2 ± 0.3 microplastics g(-1) (M. edulis) and 1.2 ± 2.8 particles g(-1) (A. marina). In a proof of principle laboratory experiment, mussels and lugworms exposed to high concentrations of polystyrene microspheres (110 particles mL(-1) seawater and 110 particles g(-1) sediment, respectively) showed no significant adverse effect on the organisms' overall energy budget. The results are discussed in the context of possible risks as a result of the possible transfer of adsorbed contaminants.

  9. Bohemia as the Homeland of the Soul in the Letters of Marina Tsvetaeva to Anna Teskova

    Directory of Open Access Journals (Sweden)

    Massimo Tria

    2014-03-01

    Full Text Available The article examines the letters sent by Marina Tsvetaeva to the translator and public figure Anna Teskova, who was one of the few poet’s Czech intimate friends, whom she met during her stay in Czechoslovakia (1922-1925. In the first part of the paper the Author focuses on the echoes of Prague and its culture in this specific correspondence, trying to ascertain to which extent Marina Tsvetaeva was acquainted with the cultural world she lived in: the lack of knowledge of the Czech language and the limited relationships with Prague intellectuals didn’t allow her to get a deep insight of the Czech cultural milieu. The textual analysis of the letters, though, on the basis of key concepts as “родной”, “родина”, “честь”, confirms the presence of a persistent feeling of Prague-homesickness in Tsvetaeva’s psycho- logical world, which brought her to develop an alternative model of Homeland, substitute to her native Russia and to Germany, which disappointed her after the rise of the Nazi Regime. Through this unique correspondence (including the first part of her Verses dedicated to Bohemia we gain the certainty that Tsvetaeva discovered in Prague and in the Czech lands an idealized model of a pacific, beautiful and faithful Homeland.

  10. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    KAUST Repository

    Olsen, Jeanine L.

    2016-01-27

    Seagrasses colonized the sea1 on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet2. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes3, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae4 and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming5, 6, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants7.

  11. Nutrient Dynamics in an Avicennia marina (Forsk. Vierh., Mangrove Forest in Vamleshwar, Gujarat, India

    Directory of Open Access Journals (Sweden)

    Isaiah Nirmal KUMAR

    2011-03-01

    Full Text Available The study was carried out to determine the nutrient budget of plants, sediments and nutrient dynamics in an Avicennia marina (Forsk. Vierh., dominated forest in Vamleshwar near Narmada estuary, West Coast of Gujarat for a period of one year from November 2008 to October 2009. The average tree height of the mangrove is 1.5 to 2 m without much vertical stratification. Allometric methodology was used to measure the biomass, and yield a figure of 86.47 t ha-1 and the litter fall rate amounted to 2.9 t ha-1. Nutrient stocks of N, P and K in this mangrove were 137.05, 14.38 and 241.29 kg ha-1, with an annual accumulation of 55.74, 12.38 and 83.94 kg ha-1, and an annual return of 51.30, 10.83 and 13.52 kg ha-1, respectively, in the form of litter. The annual uptake for N, P and K were 61.04, 14.28 and 97.46 kg ha-1, and turnover rates of N, P and K were estimated at 3, 6 and 14 years, respectively, for the study period. Flow coefficients, which reveal the dynamic processes of nutrients between mangrove plants and sediments, are also explained. The present study concluded that the A. marina dominated mangrove plantation is more efficient in nutrient use and conservation.

  12. Phenology and Growth dynamics of Avicennia marina in the Central Red Sea

    KAUST Repository

    Almahasheer, Hanan

    2016-11-28

    The formation of nodes, stem elongation and the phenology of stunted Avicennia marina was examined in the Central Red Sea, where Avicennia marina is at the limit of its distribution range and submitted to extremely arid conditions with salinity above 38 psu and water temperature as high as 35° C. The annual node production was rather uniform among locations averaging 9.59 node y−1, which resulted in a plastocron interval, the interval in between production of two consecutive nodes along a stem, of 38 days. However, the internodal length varied significantly between locations, resulting in growth differences possibly reflecting the environmental conditions of locations. The reproductive cycle lasted for approximately 12 months, and was characterized by peak flowering and propagule development in November and January. These phenological observations provide a starting point for research and restoration programs on the ecology of mangroves in the Central Red Sea, while the plastochrone index reported here would allow calculations of the growth and production of the species from simple morphological measurements.

  13. EVALUACIÓN DE ACTITUDES FRENTE AL USO DE LAS TORTUGAS MARINAS EN PLAYA GANDOCA

    Directory of Open Access Journals (Sweden)

    M Malaver

    2008-01-01

    Full Text Available en el refugio nacional de vida silvestre Gandoca-Manzanillo, Costa rica, se creó en 1986 un programa para la protección y conservación de la población anidadora de tortugas marinas. Esta evaluación buscaba identificar los aspectos que predisponen a la población a actuar de una forma determinada utilizando el modelo metodológico denominado teoría de facetas; este modelo parte de una frase mapa que enmarca la hipótesis, y con la cual se elaboró el cuestionario de evaluación que se aplicó a 106 habitantes de la comunidad de Gandoca, lo que corresponde al 40% del total de pobladores según el instituto nacional de estadística y Censos (2000. en general, los resultados mostraron que la actitud de la población de Gandoca hacia el uso que se le debe dar a las tortugas marinas se basa en el elemento emocional, donde el turismo tiene gran aceptación, y donde existe en limitada medida la responsabilidad de las acciones hacia el objeto de la actitud.

  14. Understanding the Ecoydrology of Mangroves: A Simple SPAC Model for Avicennia Marina

    Science.gov (United States)

    Perri, Saverio; Viola, Francesco; Valerio Noto, Leonardo; Molini, Annalisa

    2015-04-01

    Mangroves represent one of the most carbon-rich ecosystems in the Tropics, noticeably impacting ecosystem services and the economy of these regions. Whether the ability of mangroves to exclude and tolerate salt has been extensively investigated in the literature - both from the structural and functional point of view - their eco-hydrological characteristics remains largely understudied, despite the crucial link with productivity, efficient carbon storage and fluxes. In this contribution we develop a "first-order" Soil Plant Atmosphere Continuum model for Avicennia Marina, a mangrove able to adapt to hyper-arid intertidal zones and characterized by complex morphological and eco-physiological traits. Among mangroves, Avicennia marina is one of the most tolerant to salinity and arid climatic conditions. Our model, based on a simple macroscopic approach, takes into account the specific characteristics of the mangrove ecosystem and in particular, the salinity of the water in the soil and the levels of salt stress to which the plant may be subjected. Mangrove transpiration is hence obtained by solving the plant and leaf water balance and the leaf energy balance, taking explicitly into account the role of osmotic water potential and salinity in governing plant resistance to water fluxes. The SPAC model of Avicennia is hence tested against experimental data obtained from the literature, showing the reliability and effectiveness of this minimalist model in reproducing observed transpiration fluxes. Finally, sensitivity analysis is used to assess whether uncertainty on the adopted parameters could lead to significant errors in the transpiration assessment.

  15. Biosynthesis of silver nanoparticles from mangrove plant (Avicennia marina) extract and their potential mosquito larvicidal property.

    Science.gov (United States)

    Balakrishnan, Srinivasan; Srinivasan, Muthukumarasamy; Mohanraj, Jeyaraj

    2016-09-01

    To identify the larvicidal activities of silver nanoparticles synthesised with Avicennia marina leaf extract against the larvae of Aedes aegypti and Anopheleus stephensi, in vitro larvicidal activities such as LC50 and LC90 were assessed. Further, characterisation such as UV and FTIR analysis were carried out for the synthesised silver nanoparticles. The LC50 value of the synthesised silver nanoparticles was identified as 4.374 and 7.406 mg/L for An. stephensi and Ae. aegypti larvae respectively. Further, the LC90 values are also identified as 4.928 and 9.865 mg/L for An. stephensi and Ae. aegypti species respectively. The synthesised silver nanoparticles have maximum absorption at 420 nm with the average size of 60-95 nm. The FTIR data showed prominent peaks in (3940.57, 3929.00, 3803.63, 3712.97, 2918.30, 2231.64, 1610.50, 1377.17, 1257.59, 1041.59, 1041.56, 775.38, 667.37 and 503.21) different ranges. The biosynthesis of silver nanoparticles with leaf aqueous extract of A. marina provides potential source for the larvicidal activity against mosquito borne diseases. The present study proved the mosquitocidal properties of silver nanoparticles synthesised from mangroves of Vellar estuary. This is an ideal eco-friendly approach for the vector control programs.

  16. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

    Science.gov (United States)

    Olsen, Jeanine L; Rouzé, Pierre; Verhelst, Bram; Lin, Yao-Cheng; Bayer, Till; Collen, Jonas; Dattolo, Emanuela; De Paoli, Emanuele; Dittami, Simon; Maumus, Florian; Michel, Gurvan; Kersting, Anna; Lauritano, Chiara; Lohaus, Rolf; Töpel, Mats; Tonon, Thierry; Vanneste, Kevin; Amirebrahimi, Mojgan; Brakel, Janina; Boström, Christoffer; Chovatia, Mansi; Grimwood, Jane; Jenkins, Jerry W; Jueterbock, Alexander; Mraz, Amy; Stam, Wytze T; Tice, Hope; Bornberg-Bauer, Erich; Green, Pamela J; Pearson, Gareth A; Procaccini, Gabriele; Duarte, Carlos M; Schmutz, Jeremy; Reusch, Thorsten B H; Van de Peer, Yves

    2016-02-18

    Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants.

  17. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    Directory of Open Access Journals (Sweden)

    Ahmad Herison

    2014-04-01

    Full Text Available Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina becomes important as wave attenuation, a form of abrasion antidote. Transect-Square and Spot-Check methods were used to determine the existing condition of A.marina mangrove forests. Autocad program, coordinate converter, Google Earth, Google Map, and Arc View were applied in process of making mangrove distribution map. In western of research location exactly at Station 1 and Station 2, the density value of mangrove was 450 and 825 tree ha-1, respectively with sparse category because they were contaminated by waste and litter. In eastern of research location namely Station 3, Station 4, and Station 5 the mangroves grow well with density value of 650 (sparse, 1,500 (very dense, and 1,200 tree ha-1 (fair, respectively, eventhough the contamination still happened. The mangrove forests around the stations do not function as wave attenuation because there were many waterfront constructions which have replaced the function of mangrove forests to damp the wave. In short, it can be stated that the mangrove's function has changed in a case of wave attenuation. The function of mangrove forests is not determined by mangrove forest density but it is determined by mangrove's free position.

  18. Endotoxin Structures in the Psychrophiles Psychromonas marina and Psychrobacter cryohalolentis Contain Distinctive Acyl Features

    Directory of Open Access Journals (Sweden)

    Charles R. Sweet

    2014-07-01

    Full Text Available Lipid A is the essential component of endotoxin (Gram-negative lipopolysaccharide, a potent immunostimulatory compound. As the outer surface of the outer membrane, the details of lipid A structure are crucial not only to bacterial pathogenesis but also to membrane integrity. This work characterizes the structure of lipid A in two psychrophiles, Psychromonas marina and Psychrobacter cryohalolentis, and also two mesophiles to which they are related using MALDI-TOF MS and fatty acid methyl ester (FAME GC-MS. P. marina lipid A is strikingly similar to that of Escherichia coli in organization and total acyl size, but incorporates an unusual doubly unsaturated tetradecadienoyl acyl residue. P. cryohalolentis also shows structural organization similar to a closely related mesophile, Acinetobacter baumannii, however it has generally shorter acyl constituents and shows many acyl variants differing by single methylene (-CH2- units, a characteristic it shares with the one previously reported psychrotolerant lipid A structure. This work is the first detailed structural characterization of lipid A from an obligate psychrophile and the second from a psychrotolerant species. It reveals distinctive structural features of psychrophilic lipid A in comparison to that of related mesophiles which suggest constitutive adaptations to maintain outer membrane fluidity in cold environments.

  19. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

    Energy Technology Data Exchange (ETDEWEB)

    Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

    2012-01-01

    Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

  20. Cepas nativas del bacterioneuston marino y su actividad inhibitoria de bacterias ictiopatógenas

    Directory of Open Access Journals (Sweden)

    Jorge León

    2014-06-01

    Full Text Available En la literatura científica, las bacterias marinas han sido consideradas con frecuencia como productores de sustancias antibacterianas. En este estudio, se investigó el potencial de actividad antibiótica in vitro de cepas nativas de bacterioneuston marino aisladas de las pozas intermareales de Montemar, Bahía de Valparaiso, Chile. Se aislaron 71 cepas neustónicas antagonistas a Staphylococcus aureus ATCC 11632. Veinticinco de ellas, productoras de sustancias fuertemente inhibitorias, fueron evaluadas por su antagonismo frente a una colección de 15 bacterias ictiopatógenas. Aplicando métodos clásicos para bacterias marinas, se caracterizaron fenotípicamente orientados a la identificación. Los resultados de antibiosis indican que la totalidad cle las ictiopatógenas en prueba son susceptibles a la actividad inhibitoria de las cepas neustónicas, siendo V anguillarum NCMB 2133, V ordalii 84/2559 y V tubiashii EX1 las más sensibles. Entre las cepas aisladas del neuston se identificaron miembros de los géneros Vibrio spp. (28%, Flavobacterium spp. (12%, Alteromonas-Marinomonas (12%, Pseudomonas spp (8% y Micrococcus spp, (4%. Nueve cepas (36% no fueron identificadas. Los resultados de actividades inhibitorias frente a ictiopatógenos sugieren que dichas cepas o sus productos pudieran ser útiles en actividades de cultivos intensivos de maricultura de peces, moluscos y crustáceos.

  1. The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria

    DEFF Research Database (Denmark)

    Burmølle, Mette; Johnsen, Kaare; Abu Al-Soud, Waleed Mohamad Abdel F

    2009-01-01

    Traditional methods for bacterial cultivation recover only a small fraction of bacteria from all sorts of natural environments, and attempts have been made to improve the bacterial culturability. Here we describe the development of a cultivation method, based on the embedment of pure bacterial cu...

  2. Sæsontilpasninger i stofsikftet reducerer lyskravet hos ålegræs (Zostera marina)

    DEFF Research Database (Denmark)

    Stæhr, Peter A.; Borum, Jens

    for kuldetilpassede vinterplanter i februar (36% højere Q10-værdier). Disse ændringer blev fulgt af en nedsættelse i bladenes klorofyl (35%) og kvælstof (60%) indhold fra februar til august. Lyskompensationspunktet (EC) hvor Z. marina lige akkurat kan opretholde en positive kulstof balance, steg eksponentielt med...

  3. Comparative-Study on Populations of Zostera-Marina L (Eelgrass) - in-Situ Nitrogen Enrichment and Light Manipulation

    NARCIS (Netherlands)

    Van Lent, F.; Verschuure, J.M.; Van Veghel, M.L.J.

    1995-01-01

    The combined effects of light and nitrogen availability on population dynamical characteristics (e.g. growth rate, biomass, density, flowering) of a perennial and semi-annual population of Zostera marina L. were experimentally studied in two non-tidal lagoons (Grevelingen and Veerse Meer). Light red

  4. Fine-scale spatial distribution of the common lugworm Arenicola marina, and effects of intertidal clam fishing

    Science.gov (United States)

    Boldina, Inna; Beninger, Peter G.

    2014-04-01

    Despite its ubiquity and its role as an ecosystem engineer on temperate intertidal mudflats, little is known of the spatial ecology of the lugworm Arenicola marina. We estimated lugworm densities and analyzed the spatial distribution of A. marina on a French Atlantic mudflat subjected to long-term clam digging activities, and compared these to a nearby pristine reference mudflat, using a combination of geostatistical techniques: point-pattern analysis, autocorrelation, and wavelet analysis. Lugworm densities were an order of magnitude greater at the reference site. Although A. marina showed an aggregative spatial distribution at both sites, the characteristics and intensity of aggregation differed markedly between sites. The reference site showed an inhibition process (regular distribution) at distances marina was clearly aggregated at both sites; however, the autocorrelation strength was much weaker at the impacted site. In addition, the non-impacted site presented multi-scale spatial distribution, which was not evident at the impacted site. The differences observed between the spatial distributions of the fishing-impacted vs. the non-impacted site reflect similar findings for other components of these two mudflat ecosystems, suggesting common community-level responses to prolonged mechanical perturbation: a decrease in naturally-occurring aggregation. This change may have consequences for basic biological characteristics such as reproduction, recruitment, growth, and feeding.

  5. Significance of salinity and silicon levels for growth of a formerly estuarine eelgrass (Zostera marina) population (Lake Grevelingen, the Netherlands)

    NARCIS (Netherlands)

    Kamermans, P.; Hemminga, M.A.; De Jong, D.J.

    1999-01-01

    Since the early 1980s, the eelgrass, Zostera marina L., population in the saline Lake Gevelingen, The Netherlands, is rapidly declining. An earlier study, in which long-term data on eelgrass coverage in this former estuary were correlated with several environmental variables, showed only one signifi

  6. APPARENT LACK OF VESICULAR-ARBUSCULAR MYCORRHIZA (VAM) IN SEAGRASSES ZOSTERA MARINA L. AND THALASSIA TESTUDIUM BANKS EX KONIG

    Science.gov (United States)

    We examined two populations of Zostera marina L. and one of Thalassia testudinum Banks ex Konig for presence of vesicular-arbuscular mycorrhiza (VAM). None of these plants showed any VAM colonization. In addition, we were unable to find any literature references on the presence o...

  7. A tale of two seagrasses: Comparing the science and management of Zostera marina and Zostera japonica in the Pacific Northwest

    Science.gov (United States)

    On the Pacific coast of North America, at least two congeners of Zostera occur: native Zostera marina, and introduced, Z. japonica. Z. japonica is considered “invasive” and therefore, ecologically and economically harmful by some, while others consider it benign or perhaps benef...

  8. Feeding by the heterotrophic dinoflagellate Oxyrrhis marina on the red-tide raphidophyte Heterosigma akashiwo: a potential biological method to control red tides using mass-cultured grazers.

    Science.gov (United States)

    Jeong, Hae Jin; Kim, Jae Seong; Yoo, Yeong Du; Kim, Seong Taek; Kim, Tae Hoon; Park, Myung Gil; Lee, Chang Hoon; Seong, Kyeong Ah; Kang, Nam Seon; Shim, Jae Hyung

    2003-01-01

    As part of the development of a method to control the outbreak and persistence of red tides using mass-cultured heterotrophic protist grazers, we measured the growth and ingestion rates of cultured Oxyrrhis marina (a heterotrophic dinoflagellate) on cultured Heterosigma akashiwo (a raphidophyte) in bottles in the laboratory and in mesocosms (ca. 60 liter) in nature, and those of the cultured grazer on natural populations of the red-tide organism in mesocosms set up in nature. In the bottle incubation, specific growth rates of O. marina increased rapidly with increasing concentration of cultured prey up to ca. 950 ng C ml(-1) (equivalent to 9,500 cells ml(-1)), but were saturated at higher concentrations. Maximum specific growth rate (mumax), KGR (prey concentration sustaining 0.5 mumax) and threshold prey concentration of O. marina on H. akashiwo were 1.43 d(-1), 104 ng C ml(-1), and 8.0 ng C ml(-1), respectively. Maximum ingestion and clearance rates of O. marina were 1.27 ng C grazer(-1) d(-1) and 0.3 microl grazer(-1) h(-1), respectively. Cultured O. marina grew well effectively reducing cultured and natural populations of H. akashiwo down to a very low concentration within 3 d in the mesocosms. The growth and ingestion rates of cultured O. marina on natural populations of H. akashiwo in the mesocosms were 39% and 40%, respectively, of those calculated based on the results from the bottle incubation in the laboratory, while growth and ingestion rates of cultured O. marina on cultured H. akashiwo in the mesocosms were 55% and 36%, respectively. Calculated grazing impact by O. marina on natural populations of H. akashiwo suggests that O. marina cultured on a large scale could be used for controlling red tides by H. akashiwo near aquaculture farms that are located in small ponds, lagoons, semi-enclosed bays, and large land-aqua tanks to which fresh seawater should be frequently supplied.

  9. The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae: response to salinity examined by 454 sequencing

    Directory of Open Access Journals (Sweden)

    Montagnes David JS

    2011-10-01

    Full Text Available Abstract Background The heterotrophic dinoflagellate Oxyrrhis marina is increasingly studied in experimental, ecological and evolutionary contexts. Its basal phylogenetic position within the dinoflagellates make O. marina useful for understanding the origin of numerous unusual features of the dinoflagellate lineage; its broad distribution has lent O. marina to the study of protist biogeography; and nutritive flexibility and eurytopy have made it a common lab rat for the investigation of physiological responses of marine heterotrophic flagellates. Nevertheless, genome-scale resources for O. marina are scarce. Here we present a 454-based transcriptome survey for this organism. In addition, we assess sequence read abundance, as a proxy for gene expression, in response to salinity, an environmental factor potentially important in determining O. marina spatial distributions. Results Sequencing generated ~57 Mbp of data which assembled into 7, 398 contigs. Approximately 24% of contigs were nominally identified by BLAST. A further clustering of contigs (at ≥ 90% identity revealed 164 transcript variant clusters, the largest of which (Phosphoribosylaminoimidazole-succinocarboxamide synthase was composed of 28 variants displaying predominately synonymous variation. In a genomic context, a sample of 5 different genes were demonstrated to occur as tandem repeats, separated by short (~200-340 bp inter-genic regions. For HSP90 several intergenic variants were detected suggesting a potentially complex genomic arrangement. In response to salinity, analysis of 454 read abundance highlighted 9 and 20 genes over or under expressed at 50 PSU, respectively. However, 454 read abundance and subsequent qPCR validation did not correlate well - suggesting that measures of gene expression via ad hoc analysis of sequence read abundance require careful interpretation. Conclusion Here we indicate that tandem gene arrangements and the occurrence of multiple transcribed

  10. Fruit protected cultivation in China

    Institute of Scientific and Technical Information of China (English)

    Gao Huajun; Wang Saoming; Wang Jiaxi

    2003-01-01

    Protected fruit cultivation in China has developed very quickly from the early 1990s, and now it is animportant branch in fruit cultivation. A brief review including fruit species, developing history, growing area, output, anddistribution in the whole country is made in the paper. Characteristics of the dominant kinds of greenhouse,environmental control methods, and standards of temperature, humidity, light and CO2 for different fruit species arepresented. Information on varieties, growing benefits, special management practices and other aspects of the main fruitspecies used for protected cultivation are also presented.

  11. Isolation and Cultivation of Anaerobes

    DEFF Research Database (Denmark)

    Aragao Börner, Rosa

    2016-01-01

    Anaerobic microorganisms play important roles in different biotechnological processes. Their complex metabolism and special cultivation requirements have led to less isolated representatives in comparison to their aerobic counterparts.In view of that, the isolation and cultivation of anaerobic...... microorganisms is still a promising venture, and conventional methodologies as well as considerations and modifications are presented here. An insight into new methodologies and devices as well as a discussion on future perspectives for the cultivation of anaerobes may open the prospects of the exploitation...

  12. Examination of bacteriological status of surface fresh waters using direct and cultivation methods

    Directory of Open Access Journals (Sweden)

    Petrović Olga V.

    2011-01-01

    Full Text Available The number of bacteria in surface waters reflects the current state of waters and their trophicity, and it is the first parameter that is affected by the anthropogenic contamination. Traditionally, quantification of bacteria in waters is performed using the cultivation methods. However, all these methods detect only cultivable bacteria; the results depend on the incubation conditions, and the results are obtained after several days. These deficiencies are solved by using direct methods. This work is the first bacteriological examination of the reservoir Ćelije and its tributaries by using a direct method of quantification. Total of 343 samples of water from the reservoir and its tributaries were processed. In each sample, the count of aerobic mesophilic bacteria was determined using cultivation method was involving involved inoculation of samples on high-nutrient PCA medium and on low-nutrient R2A medium, and incubation for 7 days at room temperature. The total number of bacteria was determined by epifluorescence microscopy technique after filtration of samples previously stained with acridine orange. Using the cultivation methods, the highest number of bacteria was recorded in the river of Blatašnica on R2A medium (56,535 CFU/ml, and lowest in the basin Vodozahvat on PCA medium (1,364 CFU/ml. According to the results from R2A, water belonged to the class of water of poorer quality compared to the results from the PCA. The results obtained by the direct method were correlated with cultivation methods. The significantly highest number of bacteria was obtained by epifluorescence microscopy, and the lowest on PCA medium. If the application of direct method for some reason is not possible, the real results of bacteriological state of surface waters can be obtained by inoculation of samples on R2A medium with adequate incubation conditions.

  13. La marina de guerra de la Corona de Castilla en la Baja Edad Media. Desde sus orígenes hasta el reinado de Enrique IV

    OpenAIRE

    García de Castro, Francisco Javier

    2012-01-01

    Nuestro estudio trazar las líneas históricas esenciales de la Marina de Guerra de Castilla desde sus inicios en el siglo XIII hasta finales del reinado de Enrique IV, cuando la llegada al trono de los Reyes Católicos abre una nueva etapa en el devenir de los reinos hispánicos. La tesis se estructura en siete apartados fundamentales: 1. Remotos orígenes previos a la creación de la Marina de Guerra. 2. El Almirantazgo, institución de referencia jurídica y económica de la Marina de Ca...

  14. Laboratory Culture of Oxyrrhis marina Dujardin%海洋尖尾藻的室内培养

    Institute of Scientific and Technical Information of China (English)

    安鑫龙; 李雪梅; 宫春光

    2012-01-01

    [目的]研究海洋尖尾藻(Oxrhis marina Dujardin)室内培养的可行性,为其生理生态特性及其赤潮形成机理的研究奠定基础.[方法]在实验室培养海洋尖尾藻,饵料藻为蛋白核小球藻(Chlorella pyrenoidosa)、湛江等鞭金藻(Isochrysis zhangjiangensis)、亚心形扁藻(Platymonas subcordiformis)和绿色巴夫藻(Pavlova viridis).[结果]在实验室条件下,除高密度的蛋白核小球藻和湛江等鞭金藻外,以亚心形扁藻和绿色巴夫藻作为饵料时海洋尖尾藻均能良好地生长和繁殖.[结论]该研究为海洋尖尾藻的室内培养解决了饵料问题,实现了海洋尖尾藻室内的长期培养.%[ Objective ] The research aimed to study the feasibility of laboratory culture of O. Marina Dujardin, to lay foundation for study of its physiological and ecological characteristics and formation mechanism of red tide. [ Method ] Food algae were Chlorella pyrenoidosa, Isochry-sis zhangjiangensis, Platymonas subcordiformis and Pavlova viridis. [ Result] Under the laboratory culture conditions, except of highly dense C. Pyrenoidosa and I. Zhangjiangensis, when P. Subcordiformis and P. Viridis were used as food algae, O. Marina Dujardin could develop and breed well. [ Conclusion ] The study can solve the problem of shortage of food algae when O. Marina Dujardin was cultured in laboratory, realizing the long-term culture of O. Marina Dujardin indoor.

  15. Substratum interfacial energetic effects on the attachment of marine bacteria

    Science.gov (United States)

    Ista, Linnea Kathryn

    Biofilms represent an ancient, ubiquitous and influential form of life on earth. Biofilm formation is initiated by attachment of bacterial cells from an aqueous suspension onto a suitable attachment substratum. While in certain, well studied cases initial attachment and subsequent biofilm formation is mediated by specific ligand-receptor pairs on the bacteria and attachment substratum, in the open environment, including the ocean, it is assumed to be non-specific and mediated by processes similar to those that drive adsorption of colloids at the water-solid interface. Colloidal principles are studied to determine the molecular and physicochemical interactions involved in the attachment of the model marine bacterium, Cobetia marina to model self-assembled monolayer surfaces. In the simplest application of colloidal principles the wettability of attachment substrata, as measured by the advancing contact angle of water (theta AW) on the surface, is frequently used as an approximation for the surface tension. We demonstrate the applicability of this approach for attachment of C. marina and algal zoospores and extend it to the development of a means to control attachment and release of microorganisms by altering and tuning surface thetaAW. In many cases, however, thetaAW does not capture all the information necessary to model attachment of bacteria to attachment substrata; SAMs with similar thetaAW attach different number of bacteria. More advanced colloidal models of initial bacterial attachment have evolved over the last several decades, with the emergence of the model proposed by van Oss, Chaudhury and Good (VCG) as preeminent. The VCG model enables calculation of interfacial tensions by dividing these into two major interactions thought to be important at biointerfaces: apolar, Lifshitz-van der Waals and polar, Lewis acid-base (including hydrogen bonding) interactions. These interfacial tensions are combined to yield DeltaGadh, the free energy associated with

  16. Aves Marinas

    OpenAIRE

    Sobrado-López, A.

    2012-01-01

    De forma amena y profusamente ilustrada se hace la historia de la evolución de las aves, anatomía, diversidad, migración y amenazas a la vida de este grupo zoológico. Se identifican los tratados y las convenciones que las protegen, así como qué cada persona puede hacer para ayudar. A través de los Sabías qué... resume lo más importante, curioso y atractivo de cada tópico abordado.

  17. Ancient bacteria show evidence of DNA repair

    DEFF Research Database (Denmark)

    Johnson, Sarah Stewart; Hebsgaard, Martin B; Christensen, Torben R

    2007-01-01

    Recent claims of cultivable ancient bacteria within sealed environments highlight our limited understanding of the mechanisms behind long-term cell survival. It remains unclear how dormancy, a favored explanation for extended cellular persistence, can cope with spontaneous genomic decay over......-term survival of bacteria sealed in frozen conditions for up to one million years. Our results show evidence of bacterial survival in samples up to half a million years in age, making this the oldest independently authenticated DNA to date obtained from viable cells. Additionally, we find strong evidence...... that this long-term survival is closely tied to cellular metabolic activity and DNA repair that over time proves to be superior to dormancy as a mechanism in sustaining bacteria viability....

  18. Photosynthetic carbon fixation pathways in Zostera marina and three Florida seagrasses

    Energy Technology Data Exchange (ETDEWEB)

    Beer, S.; Wetzel, R.G.

    1982-06-01

    The photosynthetic carbon fixation pathways of four seagrass species, Zostera marina L. from Alaska and Thalassia testudinum Banks ex Konig, Syringodium filiforme Kutz. and Halodule wrightii Aschers. from the Gulf of Mexico, were investigated with a /sup 14/C pulse-chase technique. All species were found to be principally of the C/sub 3/ type. However, Thalassia and Halodule had higher initial incorporation rates into organic acids than is typical for terrestrial C/sub 3/ plants. Of 11 seagrass species investigated thus far for C/sub 3/ or C/sub 4/ metabolism using this technique, 10 were found to be principally of the C/sub 3/ type while only one exhibited C/sub 4/ metabolism.

  19. Sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China

    Science.gov (United States)

    Li, Ruili; Chai, Minwei; Guo, Meixian; Qiu, Guo Yu

    2016-08-01

    To investigate the rate of sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China, sediment cores were analyzed. The results showed that Hg concentrations were much higher at all depths compared to the background level. A high correlation between Hg and total organic carbon (TOC) indicated their similar anthropogenic origin. Sedimentation rate was estimated to be 1.38 cm a-1 by 210Pb geochronology. The increase in the mass sediment accumulation rates was rapid (range: 0.5-0.94 g cm-2 a-1), and the Hg fluxes ranged between 76 and 116 ng cm-2 a-1 during the last three decades. The reduction in both Hg concentrations and flux during the last decade may be due to the adoption of contamination control policies. Our results support the notion that the Hg fluxes determined from the sediment cores reveal the effects of anthropogenic influences from the areas around Deep Bay.

  20. Rezension zu: Marina Caffiero (Hg.: Rubare le anime. Roma: Viella 2008

    Directory of Open Access Journals (Sweden)

    Rita Unfer Lukoschik

    2009-07-01

    Full Text Available In den Akten des päpstlichen Staatsarchivs und der römischen jüdischen Gemeinde finden sich zeitgenössische Zeugnisse für die im päpstlichen Rom vom 16. bis zum 19. Jahrhundert nicht seltene Zwangskonvertierung jüdischer Mädchen und Frauen zum Katholizismus. Eines der wertvollsten Dokumente dieser Konversionspraxis liegt nunmehr in einer kommentierten Neuedition vor: das Tagebuch der 1749 sich erfolgreich der versuchten Zwangskonvertierung widersetzenden 18-jährigen Anna del Monte. In ihrer Einleitung ordnet die Herausgeberin Marina Caffiero dieses außergewöhliche Einzelschicksal in die zeitgleich und parallel laufenden Assimilations- und Emanzipationsprozesse ein, die sich in der mit aufklärerischem Gedankengut ‚infizierten‘ jüdischen Oberschicht Roms im 18. Jahrhundert abzeichneten.

  1. Synergistic effects of altered salinity and temperature on estuarine eelgrass (Zostera marina) seedlings and clonal shoots

    DEFF Research Database (Denmark)

    Salo, Tiina Elina; Pedersen, Morten Foldager

    2014-01-01

    Salinity and temperature are among the most important factors determining eelgrass distribution and performance. Plants in estuarine environments experience large variations in both on a seasonal basis and exceptionally warm summers have caused massive die-backs of eelgrass in many areas. We...... investigated experimentally how different combinations of salinity and temperature affect the physiological performance of adult eelgrass (Zostera marina) shoots and seedlings. Plants were exposed to different combinations of salinity (salinity 5, 12.5 and 20) and temperature (15, 20 and 25 °C) in a 5-week...... aquarium experiment. Plants responded in general negatively to decreasing salinity and increasing temperature and the combination of high temperature and low salinity resulted in markedly higher mortality rates and lower leaf production when compared to plants held at more optimal combinations of salinity...

  2. Photovoltaic DER System Could Save USPS $25,000 per Year in Marina del Rey, California

    Energy Technology Data Exchange (ETDEWEB)

    2002-11-01

    In numerous projects, government agencies are demonstrating the economic and environmental value of using distributed energy resources (DER) to provide reliable electricity for Federal facilities. These projects also show how renewable DER systems such as photovoltaics (PV) can be effectively integrated into utility power grids to provide added power during peak demand periods in populous regions and states. This four-page case study describes a recent project in which the United States Postal Service (USPS) worked with the U.S. Department of Energy (DOE) Federal Energy Management Program (FEMP), a national laboratory, the local utility, and a private company to install a PV DER system at the USPS Marina Processing and Distribution Center in Inglewood, California. This system is expected to shave 10% off the facility's 1.2-megawatt peak power demand and save more $25,000 per year in utility costs.

  3. A trap for in situ cultivation of filamentous actinobacteria

    Science.gov (United States)

    Gavrish, Ekaterina; Bollmann, Annette; Epstein, Slava; Lewis, Kim

    2008-01-01

    The approach of growing microorganisms in situ, or in a simulated natural environment is appealing, and different versions of it have been described by several groups. The major difficulties with these approaches are that they are not selective for actinomycetes – a group of gram-positive bacteria well known as a rich source of antibiotics. In order to efficiently access actinomycetes, a trap for specifically capturing and cultivating these microorganisms in situ has been developed, based on the ability of these bacteria to form hyphae and penetrate solid environments. The trap is formed by two semi-permeable membranes (0.2 – 0.6 μm pore-size bottom membrane and 0.03 μm pore-size top membrane) glued to a plastic washer with sterile agar or gellan gum inside. The trap is placed on top of soil, and filamentous microorganisms selectively penetrate into the device and form colonies. Decreasing the size of the pores of the lower membrane to 0.2 μm restricted penetration of fungi. The trap produced more filamentous actinobacteria, and a higher variety of them, as compared to a conventional Petri dish cultivation from the same soil sample. Importantly, the trap cultivation resulted in the isolation of unusual and rare actinomycetes. PMID:18255181

  4. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones

    Science.gov (United States)

    Park, Sang Rul; Kim, Sangil; Kim, Young Kyun; Kang, Chang-Keun; Lee, Kun-Seop

    2016-01-01

    Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax) and minimum saturation irradiance (Ek) of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α) and maximum quantum yield (Fv/Fm) were higher in subtidal plants. The intertidal plants also had significantly greater Stern–Volmer non-photochemical quenching (NPQ) than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´) in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones. PMID:27227327

  5. Sport and Tourism: a potentially conflictual relationship. The case of Marinas in Tenerife

    Directory of Open Access Journals (Sweden)

    Manuel Eduardo González Ramallal

    2010-01-01

    Full Text Available El artículo se centra en los conflictos que pueden surgir en el ámbito del deporte y el turismo partiendo del estudio de un caso centrado en dos puertos deportivos de la isla de Tenerife (España. A través de una aproximación cualitativa, se analizó el discurso de los participantes en siete actividades deportivas marinas diferentes. Frente a la tradicional visión optimista en torno a la relación entre deporte y turismo, los resultados de la investigación muestran que pueden surgir conflictos si ésta no se gestiona adecuadamente. Los conflictos pueden darse a tres niveles. En primer lugar, a nivel de práctica deportiva, donde los problemas pueden surgir entre las diferentes actividades deportivas que se dan en torno a los puertos deportivos. En segundo lugar, entre los diferentes grupos sociales que usan los puertos deportivos. En tercer lugar, a nivel turístico, los conflictos pueden surgir entre el modelo de desarrollo turístico y el uso que se le da a las marinas como espacios deportivos. El artículo concluye enfatizando las cuestiones clave a considerar para gestionar adecuadamente la relación deporte y turismo, tales como las de la imagen de marca asociada tanto a los deportes como a los destinos turísticos, así como los grupos sociales que habitualmente practican un deporte o visitan un destino.

  6. Antibacterial potential of biosynthesised silver nanoparticles using Avicennia marina mangrove plant

    Science.gov (United States)

    Gnanadesigan, M.; Anand, M.; Ravikumar, S.; Maruthupandy, M.; Syed Ali, M.; Vijayakumar, V.; Kumaraguru, A. K.

    2012-06-01

    The present study was aimed to identify the antibacterial potential of biosynthesised silver nanoparticles using different plant parts (leaves, bark and root) of Avicenna marina mangrove plant. Of the selected three different parts, the leaf extract showed the maximum synthesis of silver nanoparticles. The in vitro antibacterial assay (100 μg disk-1 concentration) showed the results of maximum zone of inhibition with the E. coli (18.40 ± 0.97 mm), and minimum (10.87 ± 1.33 mm) zone of inhibition with S. aureus but the concentrations of MIC and MBC values ranged between 6.25 and 50.0 μg ml-1 between the selected bacterial strains. The FTIR results of most potent leaf extract-synthesized silver nanoparticles showed the prominent peaks (620.967; 1,061.02; 1,116.58; 1,187.94; 1,280.50; 1,353.79; 1,384.64; 1,598.50; 1,629.56; 2,854.14 and 2,927.42) in different ranges. Further, the results of XRD analysis showed the 2 θ intense values (38.11 and 70.57) within the ranges of Bragg's reflection. In addition, the AFM analysis showed the results of particle sizes (71-110 nm), particle roughness (11.8 nm), maximum height of the particle roughness (111.8 nm), and average maximum height of the particle roughness (57.5 nm). It can be concluded from the present findings that, the biosynthesis of silver nanoparticles from the leaf extract of A. marina can be used as potential antibacterial agents.

  7. 瑞典沿岸水域濒临消失的大叶藻(Zostera Marina,L.)%Vanishing Seagrass (Zostera marina, L.) in Swedish Coastal Waters

    Institute of Scientific and Technical Information of China (English)

    Susanne Baden; Martin Gullstr(o)m; Bengt Lundén; Leif Pihl; Rutger Rosenberg

    2003-01-01

    在瑞典斯卡格拉克海峡沿岸,大叶藻(Zostera marina)是一种生长在浅水软海底上的优势显花植物.大叶藻场是许多甲壳动物和鱼类,不管是洄游种或是稳定种的重要群落生境.在20世纪80年代期间,作为海岸带管理的基础,对瑞典西海岸有大叶藻生长的沿岸浅水区的资源进行了调查.在这次研究中我们再次考察了斯卡格拉克海峡200km沿岸的5个沿海地区中的2000hm2大叶藻场.资源调查的方法(水下测量镜)与80年代的一样,但通过使用全球定位系统(GPS)增加了绘图的精确度.这次研究的结果表明,在10~15年的时间里,大叶藻的区域延伸面积减少了58%,且地区变化很大.大叶藻的减少主要限于大叶藻场的浅水部分.本文探讨了原因和生态后果.

  8. Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.).

    Science.gov (United States)

    Zhang, Qianqian; Táborský, Petr; Silberman, Jeffrey D; Pánek, Tomáš; Čepička, Ivan; Simpson, Alastair G B

    2015-09-01

    Trimastigids are free-living, anaerobic protists that are closely related to the symbiotic oxymonads, forming together the taxon Preaxostyla (Excavata: Metamonada). We isolated fourteen new strains morphologically corresponding to two species assigned to Trimastix (until now the only genus of trimastigids), Trimastix marina and Trimastix pyriformis. Unexpectedly, marine strains of Trimastix marina branch separately from freshwater strains of this morphospecies in SSU rRNA gene trees, and instead form the sister group of all other Preaxostyla. This position is confirmed by three-gene phylogenies. Ultrastructural examination of a marine isolate of Trimastix marina demonstrates a combination of trimastigid-like features (e.g. preaxostyle-like I fibre) and ancestral characters (e.g. absence of thickened flagellar vane margins), consistent with inclusion of marine T. marina within Preaxostyla, but also supporting its distinctiveness from 'freshwater T. marina' and its deep-branching position within Preaxostyla. Since these results indicate paraphyly of Trimastix as currently understood, we transfer the other better-studied trimastigids to Paratrimastix n. gen. and Paratrimastigidae n. fam. The freshwater form previously identified as T. marina is described as Paratrimastix eleionoma n. sp., and Trimastix pyriformis becomes Paratrimastix pyriformis n. comb. Because of its phylogenetic position, 'true' Trimastix is potentially important for understanding the evolution of mitochondrion-related organelles in metamonads.

  9. Application of ozonated piggery wastewater for cultivation of oil-rich Chlorella pyrenoidosa.

    Science.gov (United States)

    Gan, Ke; Mou, Xiaoqing; Xu, Yan; Wang, Haiying

    2014-11-01

    Ozonated and autoclaved piggery wastewaters were compared for cultivation of oil-rich Chlorella pyrenoidosa by measuring nutrient removal from the medium and growth rate and lipid production of the microalgae. The removal rates of chemical oxygen demand, NH4(+)-N, total nitrogen and total phosphorus by C. pyrenoidosa were not influenced by both sterilisation methods. The specific growth rate and biomass of C. pyrenoidosa were determined by analysing the chlorophyll concentration for eliminating the disturbance of bacteria growth in culture system. Bacteria raised from the residue in the ozonated medium achieved 30% of the total microorganisms at the end of cultivation. They reduced the growth of C. pyrenoidosa by 10.4%, but contributed to a faster decline of the nutrient content on the first day. Lipid production and fatty acid profile did not change markedly in both sterilisation methods. The results suggest that ozonation is acceptable for piggery wastewater treatment for C. pyrenoidosa cultivation.

  10. Isolation, cultivation, and in vitro susceptibility testing of Borrelia burgdorferi sensu lato: A review

    Directory of Open Access Journals (Sweden)

    Veinović Gorana

    2013-01-01

    Full Text Available Lyme borreliosis is the most common vector-borne disease in the northern hemisphere. The agents of Lyme borreliosis are borrelia, bacteria of the family Spirochaetaceae, which are grouped in Borrelia burgdorferi sensu lato species complex. Borreliae are fastidious, slow-growing and biochemically inactive bacteria that need special attention and optimal conditions for cultivation. The isolation of Borrelia from clinical material and their cultivation is a time-consuming and demanding procedure. Cultivation lasts from 9 up to 12 weeks, which is much longer than is necessary to grow most other human bacterial pathogens. Although B. burgdorferi sensu lato is susceptible to a wide range of antimicrobial agents in vitro, up to now the susceptibility of individual Borrelia species to antibiotics is defined only partially. [Projekat Ministarstva nauke Republike Srbije, br. 175011

  11. Isolation of cultivable microorganisms from Polish notes and coins.

    Science.gov (United States)

    Kalita, Michal; Palusińska-Szysz, Marta; Turska-Szewczuk, Anna; Wdowiak-Wróbel, Sylwia; Urbanik-Sypniewska, Teresa

    2013-01-01

    The potential role of currency in the spread of pathogenic microflora has been evaluated in many countries. In this study Polish paper notes and the coins in general circulation were assayed for the presence of cultivable bacteria and fungi. Bacterial isolates identification was based on cultural and biochemical characters and by comparison of the 16S rRNA gene sequence. Fungal isolates were recognized with biochemical and morphological criteria. Coagulase-negative staphylococci, (43.6% of the total bacterial count) including Staphylococcus saprophyticus, S. epidermidis, and S. hominis, and Enteroccus spp. (30.8% of the total bacterial count), i.e. E.faecalis, E.faecium and E. durans, were the most numerous bacterial contamination. Penicillium spp., and Aspergillus spp. were the most frequently detected moulds whereas Candida spp. was the most frequent yeast isolated from currency. A visible dependence between the banknote denomination, the physical condition of paper currency, and the number of bacteria and fungi was found. The overall count of bacteria isolated from currency was thousand-fold higher than that of fungal isolates. The total amount of bacteria and fungi recovered from the coins was approximately 2.7-fold lower than that isolated from the notes. In summary, the Polish currency notes were found to be contaminated mainly with commensal bacteria and fungi while the opportunistic pathogenic microorganisms Escherichia coli, Pseudomonas stutzeri and C. albicans were detected at a low frequency.

  12. [Marina de Vasconcellos and the social sciences in Rio de Janeiro: a study of the social circles].

    Science.gov (United States)

    Ribeiro, Adelia Maria Miglievich

    2008-06-01

    An investigation of the career of one of the "founding mothers" of the social sciences in Rio de Janeiro, Marina de Vasconcellos, successor of Arthur Ramos, is one way of understanding how anthropology was established in Rio de Janeiro. Conflicts and alliances, continuities and discontinuities, lie behind the pioneering Brazilian Society of Anthropology and Ethnology and the Institute of Social Sciences, both at Faculdade Nacional de Filosofia. Marina de Vasconcellos' professional life bore the marks of the clash between different schools of thought regarding anthropology at a time when university courses were being introduced. As a professor, she was committed to educating new professionals, and in 1968, she was steadfast in the struggle for university autonomy. The study leads to a reflection upon the criteria for success in academia, countering the view that this depends entirely on the publication of books and articles.

  13. Phytophthora gemini sp. nov., a new species isolated from the halophilic plant Zostera marina in the Netherlands.

    Science.gov (United States)

    Man in 't Veld, Willem A; Rosendahl, Karin C H M; Brouwer, Henk; de Cock, Arthur W A M

    2011-08-01

    Eight strains belonging to the Oomycete genus Phytophthora were isolated from Zostera marina (seagrass) in The Netherlands over the past 25 y. Based on morphology, isozymes, temperature-growth relationships and ITS sequences, these strains were found to belong to two different Phytophthora species. Five strains, four of them isolated from rotting seeds and one isolated from decaying plants, could not be assigned to a known species and hence belong to a new species for which we propose the name Phytophthora gemini sp. nov. Three strains were isolated from decaying plants and were identified as Phytophthora inundata, thereby expanding the known habitat range of this species from fresh to brackish-saline areas. The possible role of both Phytophthora species in the decline of Z. marina in The Netherlands and the evolutionary significance of the presence of Phytophthora species in marine environments are discussed.

  14. Effects of algae-mat thickness on survival and growth of eelgrass (Zostera marina) seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Olesen, Birgit

    A major bottle-neck for eelgrass (Zostera marina) re-colonization is seedling survival and patch establishment as mortality rates among the young seedlings are high even in areas where light conditions and physical exposure should support survival. Since little is known about the reasons for the ......A major bottle-neck for eelgrass (Zostera marina) re-colonization is seedling survival and patch establishment as mortality rates among the young seedlings are high even in areas where light conditions and physical exposure should support survival. Since little is known about the reasons....... For eelgrass even short periods of water column anoxia may have severe implications for growth and survival. In addition, excessive covering by macroalgal mats decrease the available light at leaf surface and may hamper the diffusive movement of oxygen, inorganic carbon and nutrients to and from the shoot thus...

  15. Isolation of antibacterials from the mangrove, Avicennia marina and their activity against multi drug resistant Staphylococcus aureus

    Institute of Scientific and Technical Information of China (English)

    N.B.Dhayanithi; T. T. Ajith Kumar; R. Ganesha Murthy; K. Kathiresan

    2012-01-01

    Objective: leaf extract of A. marina was tested on the growth of clinically isolated multi-drug resistant Staphylococcus aureus and its bioactive compounds were attempted. Method: Clinical strain of Staphylococcus aureus, were isolated from sputum, pus and blood of different patients and 22 strains were screened for antibiotic susceptibility. Avicennia marina was extracted in different solvents and antibacterial assay was carried out using Kirby-Bauer’s disk diffusion method. Crude methanol extract of the mangrove was loaded on a silica gel column and eluted with chloroform and methanol (9:1 to 1:9) followed by ethyl acetate and methanol (9:1 to 1:9). Based on in vitro assay, the 12th fraction was subjected for minimum inhibitory concentration (MIC). The active fraction was analysed by using a Clarus 500 Perkin Elmer gas chromatography. Result: Based on the antibiotic susceptibility test, six strains (RMSA 6, RMSA12, RMSA16, RMSA18, RMSA19 and RMSA21) were resistance against methicillin, vancomycin and ciprofloxacin. The results indicated that the methanolic leaf extract showed the highest antibacterial activity against all the tested strains RMSA 6 (16mm), RMSA12 (15 mm), RMSA16 (13 mm), RMSA18 (10 mm), RMSA19 (17 mm) and RMSA21 (16 mm). The MIC of the partially purified extract showed potential results against all the multidrug resistant strains however, the lowest concentration was recorded against RMSA 6, RMSA19 and RMSA21 strain. In the GC-MS results, 5 bioactive compounds were identified from the partially purified extract of A.marina. Conclusion:The methanolic extract of A. marina has the more potential candidate to inhibit against multidrug resistant S. aureus.

  16. Análisis preliminar de la estructura primaria y secundaria del ARNtTrp en tortugas marinas

    Directory of Open Access Journals (Sweden)

    Harvey Infante-Rojas

    2015-06-01

    Full Text Available Actualmente existen siete especies de tortugas marinas, todas amenazadas o en riesgo inminente de extinción. Los estudios con ADN mitocondrial han permitido hacer acercamientos sobre filogenia, evolución, rutas migratorias y centros de dispersión, además para la identificación de polimorfismos y haplotipos, siendo base para planes de manejo y conservación. El presente estudio representa la primera descripción comparada de la estructura primaria y secundaria del ARNtTrp mitocondrial en tortugas marinas. Se realizó un alineamiento múltiple de 26 secuencias del gen que codifica para el ARNtTrp y se propuso la estructura secundaria utilizando el programa ARWEN. Se identificaron potenciales interacciones terciarias por homología comparada con el ARNtTrp de mamíferos. Los resultados mostraron una secuencia consenso de 76 bases con siete regiones conservadas que representan el 76 % de la molécula. Se identificaron polimorfismos que representan tres haplotipos para C. caretta, dos para C. mydas y uno para cada una de las demás especies. Las estructuras secundarias mostraron cambios nucleotídicos puntuales para cada especie y también mostraron que el tallo aceptor, el brazo TψC y el bucle anticodón son motivos conservados en el ARNtTrp de las tortugas marinas. Se encontró un enlace no canónico tipo A-A en el tallo DHU que podría considerarse característico de tortugas marinas. Además, se obtuvo una estructura secundaria consenso en donde se identificaron las siete regiones conservadas, seis posibles interacciones terciarias y el bucle DHU como región variable.

  17. High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine

    Science.gov (United States)

    Castro, Daniel B.A.; Pereira, Letícia Bianca; Silva, Marcus Vinícius M. e; Silva, Bárbara P. da; Palermo, Bruna Rafaella Z.; Carlos, Camila; Belgini, Daiane R.B.; Limache, Elmer Erasmo G.; Lacerda, Gileno V. Jr; Nery, Mariana B.P.; Gomes, Milene B.; Souza, Salatiel S. de; Silva, Thiago M. da; Rodrigues, Viviane D.; Paulino, Luciana C.; Vicentini, Renato; Ferraz, Lúcio F.C.; Ottoboni, Laura M.M.

    2015-01-01

    An actinobacterial strain, designated SO9-6, was isolated from a copper iron sulfide mineral. The organism is Gram-positive, facultatively anaerobic, and coccoid. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Kocuria. Here, we report the first draft genome sequence of Kocuria marina SO9-6 under accession JROM00000000 (http://www.ncbi.nlm.nih.gov/nuccore/725823918), which provides insights for heavy metal bioremediation and production of compounds of biotechnological interest. PMID:26484219

  18. Friday Harbor Marina Expansion Study--San Juan Island, Washington: Final Detailed Project Report and Environmental Assessment.

    Science.gov (United States)

    1981-04-01

    Commnercial Charter Boat Benefits 4-8 f. Average Annual Benefits 4-8 g. Average Annual Costs 4-9 h. Economic Justification 4-9 4.23 Enviromental Effects...Appendixes Appendix A - Study Coordination and Public Involvement Appendix B - Economic and Social Evaluation Appendix C - Engineering Design and Cost...additional moorages and protection for an expanded marina. In analyzing and evaluating these alternatives, legal, financial, policy, social, economic

  19. Structure, Aboveground Biomass, and Soil Characterization of Avicennia marina in Eastern Mangrove Lagoon National Park, Abu Dhabi

    Science.gov (United States)

    Alsumaiti, Tareefa Saad Sultan

    Mangrove forests are national treasures of the United Arab Emirates (UAE) and other arid countries with limited forested areas. Mangroves form a crucial part of the coastal ecosystem and provide numerous benefits to society, economy, and especially the environment. Mangrove trees, specifically Avicennia marina, are studied in their native habitat in order to characterize their population structure, aboveground biomass, and soil properties. This study focused on Eastern Mangrove Lagoon National Park in Abu Dhabi, which was the first mangrove protected area to be designated in UAE. In situ measurements were collected to estimate Avicennia marina status, mortality rate (%), height (m), crown spread (m), stem number, diameter at breast height (cm), basal area (m), and aboveground biomass (t ha-1 ). Small-footprint aerial light detection and ranging (LIDAR) data acquired by UAE were processed to characterize mangrove canopy height and aboveground biomass density. This included extraction of LIDAR-derived height percentile statistics, segmentation of the forest into structurally homogenous units, and development of regression relationships between in situ reference and remote sensing data using a machine learning approach. An in situ soil survey was conducted to examine the soils' physical and chemical properties, fertility status, and organic matter. The data of soil survey were used to create soil maps to evaluate key characteristics of soils, and their influence on Avicennia marina in Eastern Mangrove Lagoon National Park. The results of this study provide new insights into Avicennia marina canopy population, structure, aboveground biomass, and soil properties in Abu Dhabi, as data in such arid environments is lacking. This valuable information can help in managing and preserving this unique ecosystem.

  20. DMTB: the magnetotactic bacteria database

    Science.gov (United States)

    Pan, Y.; Lin, W.

    2012-12-01

    Magnetotactic bacteria (MTB) are of interest in biogeomagnetism, rock magnetism, microbiology, biomineralization, and advanced magnetic materials because of their ability to synthesize highly ordered intracellular nano-sized magnetic minerals, magnetite or greigite. Great strides for MTB studies have been made in the past few decades. More than 600 articles concerning MTB have been published. These rapidly growing data are stimulating cross disciplinary studies in such field as biogeomagnetism. We have compiled the first online database for MTB, i.e., Database of Magnestotactic Bacteria (DMTB, http://database.biomnsl.com). It contains useful information of 16S rRNA gene sequences, oligonucleotides, and magnetic properties of MTB, and corresponding ecological metadata of sampling sites. The 16S rRNA gene sequences are collected from the GenBank database, while all other data are collected from the scientific literature. Rock magnetic properties for both uncultivated and cultivated MTB species are also included. In the DMTB database, data are accessible through four main interfaces: Site Sort, Phylo Sort, Oligonucleotides, and Magnetic Properties. References in each entry serve as links to specific pages within public databases. The online comprehensive DMTB will provide a very useful data resource for researchers from various disciplines, e.g., microbiology, rock magnetism and paleomagnetism, biogeomagnetism, magnetic material sciences and others.

  1. Effects of conventional and biodegradable microplastics on a marine ecosystem engineer (Arenicola marina) and sediment nutrient cycling.

    Science.gov (United States)

    Green, Dannielle Senga; Boots, Bas; Sigwart, Julia; Jiang, Shan; Rocha, Carlos

    2016-01-01

    Effects of microplastic pollution on benthic organisms and ecosystem services provided by sedimentary habitats are largely unknown. An outdoor mesocosm experiment was done to realistically assess the effects of three different types of microplastic pollution (one biodegradable type; polylactic acid and two conventional types; polyethylene and polyvinylchloride) at increasing concentrations (0.02, 0.2 and 2% of wet sediment weight) on the health and biological activity of lugworms, Arenicola marina (Linnaeus, 1758), and on nitrogen cycling and primary productivity of the sediment they inhabit. After 31 days, A. marina produced less casts in sediments containing microplastics. Metabolic rates of A. marina increased, while microalgal biomass decreased at high concentrations, compared to sediments with low concentrations or without microplastics. Responses were strongest to polyvinylchloride, emphasising that different materials may have differential effects. Each material needs to be carefully evaluated in order to assess their risks as microplastic pollution. Overall, both conventional and biodegradable microplastics in sandy sediments can affect the health and behaviour of lugworms and directly or indirectly reduce primary productivity of these habitats.

  2. Texture and composition of the Rosa Marina beach sands (Adriatic coast, southern Italy: a sedimentological/ecological approach

    Directory of Open Access Journals (Sweden)

    Moretti Massimo

    2016-06-01

    Full Text Available Beach sands from the Rosa Marina locality (Adriatic coast, southern Italy were analysed mainly microscopically in order to trace the source areas of their lithoclastic and bioclastic components. The main cropping out sedimentary units were also studied with the objective to identify the potential source areas of lithoclasts. This allowed to establish how the various rock units contribute to the formation of beach sands. The analysis of the bioclastic components allows to estimate the actual role of organisms regarding the supply of this material to the beach. Identification of taxa that are present in the beach sands as shell fragments or other remains was carried out at the genus or family level. Ecological investigation of the same beach and the recognition of sub-environments (mainly distinguished on the basis of the nature of the substrate and of the water depth was the key topic that allowed to establish the actual source areas of bioclasts in the Rosa Marina beach sands. The sedimentological analysis (including a physical study of the beach and the calculation of some statistical parameters concerning the grain-size curves shows that the Rosa Marina beach is nowadays subject to erosion.

  3. Bioaccumulation and distribution of metals in sediments and Avicenna marina tissues in the Hara Biosphere Reserve, Iran.

    Science.gov (United States)

    Nowrouzi, Mohsen; Pourkhabbaz, Alireza; Rezaei, Mohammadreza

    2012-10-01

    The metal pollution in Sediments and Avicenna marina tissues in the Hara Biosphere Reserve was monitored for Lead (Pb), Cadmium (Cd), and Nickel (Ni) with atomic absorption spectrometer. The results showed that the mean concentration of Pb, Cd, and Ni in the water and sediments were much higher than the recommended threshold limits in the most stations, also the highest means of Pb, Cd, and Ni were observed in Avicenna roots and it were 25.26 ± 4.86, 2.17 ± 0.74, and 26.72 ± 6.17 (μg g(-1)) respectively. Calculating BCF (bioconcentration factor) index illustrates that A. marina accumulates Pb, Cd, and Ni 1.62, 1.52 and 0.73 times greater than sediment levels respectively, So it can show that A. marina may be employed as a biological indicator exposure of Cd, Pb, and Ni with temporal monitoring, also the factories were main sources of metals contamination in the Hara Biosphere Reserve.

  4. [Effects of stereoscopic cultivation on soil microorganism, enzyme activity and the agronomic characters of Panax notoginseng].

    Science.gov (United States)

    Liao, Pei-ran; Cui, Xiu-ming; Lan, Lei; Chen, Wei-dong; Wang, Cheng-xiao; Yang, Xiao-yan; Liu, Da-hui; Yang, Ye

    2015-08-01

    Compartments of soil microorganism and enzymes between stereoscopic cultivation (three storeys) and field cultivation (CK) of Panax notoginseng were carried out, and the effects on P. notoginseng agronomic characters were also studied. Results show that concentration of soil microorganism of stereoscopic cultivation was lower than field cultivation; the activity of soil urea enzyme, saccharase and neutral phosphatase increased from lower storey to upper storey; the activity of soil urea enzyme and saccharase of lower and upper storeys were significantly lower than CK; agronomic characters of stereoscopic cultivated P. notoginsengin were inferior to field cultivation, the middle storey with the best agronomic characters among the three storeys. The correlation analysis showed that fungi, actinomycetes and neutral phosphatase were significantly correlated with P. notoginseng agronomic characters; concentration of soil fungi and bacteria were significantly correlated with the soil relative water content; actinomycete and neutral phosphatase were significantly correlated with soil pH and relative water content, respectively; the activities of soil urea enzyme and saccharase were significantly correlated with the soil daily maximum temperature difference. Inconclusion, The current research shows that the imbalance of soil microorganism and the acutely changing of soil enzyme activity were the main reasons that caused the agronomic characters of stereoscopic cultivated P. notoginseng were worse than field cultivation. Thus improves the concentration of soil microorganism and enzyme activity near to field soil by improving the structure of stereoscopic cultivation is very important. And it was the direction which we are endeavoring that built better soil ecological environment for P. notoginseng of stereoscopic cultivation.

  5. Cultivation and uses of cucurbits

    Science.gov (United States)

    Cultivated cucurbits have spread through trade and exploration from their respective Old and New World centers of origin to the six arable continents and are important in local, regional and world trade. Cucumber (Cucumis sativus L.), melon (Cucumis melo L.), pumpkin, squash and gourd (Cucurbita spp...

  6. Cultivating archives: meanings and identities

    NARCIS (Netherlands)

    E. Ketelaar

    2012-01-01

    By cultivating archives through successive activations, people and communities define their identities. In these activations, the meanings of archives are constructed and reconstructed. Archives are not a static artifact imbued with the record creator’s voice alone, but a dynamic process involving a

  7. The MARINA model (Model to Assess River Inputs of Nutrients to seAs): Model description and results for China.

    Science.gov (United States)

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-08-15

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for China of the Global NEWS-2 (Nutrient Export from WaterSheds) model with an improved approach for nutrient losses from animal production and population. We use the model to quantify dissolved inorganic and organic nitrogen (N) and phosphorus (P) export by six large rivers draining into the Bohai Gulf (Yellow, Hai, Liao), Yellow Sea (Yangtze, Huai) and South China Sea (Pearl) in 1970, 2000 and 2050. We addressed uncertainties in the MARINA Nutrient model. Between 1970 and 2000 river export of dissolved N and P increased by a factor of 2-8 depending on sea and nutrient form. Thus, the risk for coastal eutrophication increased. Direct losses of manure to rivers contribute to 60-78% of nutrient inputs to the Bohai Gulf and 20-74% of nutrient inputs to the other seas in 2000. Sewage is an important source of dissolved inorganic P, and synthetic fertilizers of dissolved inorganic N. Over half of the nutrients exported by the Yangtze and Pearl rivers originated from human activities in downstream and middlestream sub-basins. The Yellow River exported up to 70% of dissolved inorganic N and P from downstream sub-basins and of dissolved organic N and P from middlestream sub-basins. Rivers draining into the Bohai Gulf are drier, and thus transport fewer nutrients. For the future we calculate further increases in river export of nutrients. The MARINA Nutrient model quantifies the main sources of coastal water pollution for sub-basins. This information can contribute to formulation of

  8. Fungal cultivation on glass-beads

    DEFF Research Database (Denmark)

    Droce, Aida; Sørensen, Jens Laurids; Giese, Henriette;

    Transcription of various bioactive compounds and enzymes are dependent on fungal cultivation method. In this study we cultivate Fusarium graminearum and Fusarium solani on glass-beads with liquid media in petri dishes as an easy and inexpensive cultivation method, that resembles in secondary meta...... metabolite production to agar-cultivation but with an easier and more pure RNA-extraction of total fungal mycelia....

  9. Bleach vs. Bacteria

    Science.gov (United States)

    ... Articles | Inside Life Science Home Page Bleach vs. Bacteria By Sharon Reynolds Posted April 2, 2014 Your ... hypochlorous acid to help kill invading microbes, including bacteria. Researchers funded by the National Institutes of Health ...

  10. Distribution and identification of proteolytic Bacillus spp. in paddy field soil under rice cultivation.

    Science.gov (United States)

    Watanabe, K; Hayano, K

    1993-07-01

    Proteolytic bacteria in paddy field soils under rice cultivation were characterized and enumerated using azocoll agar plates. Bacillus spp. were the proteolytic bacteria that were most frequently present, comprising 59% of the isolates. They were always the numerically dominant proteolytic bacteria isolated from three kinds of fertilizer treatments (yearly application of rice-straw compost and chemical fertilizer, yearly application of chemical fertilizer, and no fertilizer application) and at three different stages of rice development (vegetative growth stage, maximal tillering stage, and harvest stage). Of the 411 proteolytic bacteria isolated, 124 isolates had stronger proteolytic activity than others on the basis of gelatin liquefaction tests and most of them were Bacillus spp. (100% in 1989 and 92.4% in 1991). Bacillus subtilis and Bacillus cereus were the main bacteria of this group and Bacillus mycoides, Bacillus licheniformis, and Bacillus megaterium were also present. We conclude that these Bacillus spp. are the primary source of soil protease in these paddy fields.

  11. Bacteria and lignin degradation

    Institute of Scientific and Technical Information of China (English)

    Jing LI; Hongli YUAN; Jinshui YANG

    2009-01-01

    Lignin is both the most abundant aromatic (phenolic) polymer and the second most abundant raw material.It is degraded and modified by bacteria in the natural world,and bacteria seem to play a leading role in decomposing lignin in aquatic ecosystems.Lignin-degrading bacteria approach the polymer by mechanisms such as tunneling,erosion,and cavitation.With the advantages of immense environmental adaptability and biochemical versatility,bacteria deserve to be studied for their ligninolytic potential.

  12. On the Cultivation of Intensive Reading Skills

    Institute of Scientific and Technical Information of China (English)

    杨雪琴

    2008-01-01

    This paper concerns the importance of the cultivation of reading skills,the characteristics of intensive reading and how to cultivate the intensive reading skills.Since the focus of this papre is how to cultivate the intensive reading skills,we make a systematic exposition from three points: word study,grammar patterns and text.

  13. Composición Esterólica de la Esponja Marina Xestospongia Muta

    Directory of Open Access Journals (Sweden)

    Carmenza Duque

    2009-10-01

    Full Text Available De la esponja marina Xestospongia muta recolectada en la bahía de Santa Marta, Caribe Colombiano, se aislaron por Cromatografía en Columna (CC sobre Silica gel, eluyendo con Benceno: Acetato de Etilo 10:2, dos fracciones esteróiicas; XMl (Rf = 0,28,Si02/Benceno; AcOEt 10:2 y XM2 (Rf = 0,24,SiO2/Benceno : AcOEt 10:2, Los esteróles presentes en estas dos fracciones fueron sometidos a Cromatografía Liquida de Alta Eficiencia (CLAE preparativa y analizados por Cromatografía de Gases (CG y Cromatografía de Gases acoplada en Espectometrla de Masas (CG-EM, Catorce esteróles fueron separados y 13 idenficados. La mayoría de ellos fueron 3n-0H-A^-Esteróles (Aproximadamente el 87% de los esteróles totales incluyendo al (24R + 24S-5,28-Estigmastadien-3i3-24-diol, mezclaepimérica por primera vez asi reportada en la naturaleza. El porcentaje restante correspondió a Estañóles y a un 6,2% de compuestos sin identificar.

  14. Policy plans and management measures to restore eelgrass (Zostera marina L.) in the Dutch Wadden Sea

    Science.gov (United States)

    de Jonge, V. N.; de Jong, D. J.; van Katwijk, M. M.

    2000-07-01

    The Dutch Wadden Sea has been changed dramatically over the last centuries by human activities like land reclamation and different forms of fishery. This has, amongst other things, led to changes in the number of biological communities. One of the changes was the near extinction of eelgrass (Zostera marina L.) in the Dutch Wadden Sea. The deterioration of the area led to policy plans in the late 1980s that aimed at restoring the original natural communities of which the eelgrass community was one. This paper presents a restoration strategy which contains a selection procedure for suitable transplantation sites. The selection procedure is based on factors such as sediment composition, exposure time, current velocity and wave action. These were combined in a GIS-based map integrating these factors. One important action in the restoration process is to increase the number of freshwater discharge points to meet the requirements of the brackish water community in general and the growing conditions for eelgrass in particular.

  15. An ultrastructural study of spermatogenesis and sperm morula breakdown in Arenicola marina (L.) (Annelida: Polychaeta)

    Science.gov (United States)

    Pacey, A. A.; Bentley, M. G.

    1992-06-01

    Spermatogenesis in the lugworm Arenicola marina, in common with other members of Arenicolidae, occurs in the coelomic fluid and results in the formation of discs of mature spermatozoa known as a morulae. Within a morula, individual spermatozoa are connected by a common mass of cytoplasm called the cytophore and therefore make up a syncitium. Immediately prior to spawning, and in response to an endocrine substance known as “Sperm Maturation Factor” (SMF), the structure of the sperm morulae breaks down and free spermatozoa are liberated. These are subsequently spawned from the body cavity. The investigation described here uses transmission electron microscopy to investigate the ultrastructural changes, which accompany spermatogenesis and the breakdown of sperm morulae in response to SMF in vitro. The study demonstrates that the cytophore appears to have a key role both during spermatogenesis and during sperm morula breakdown. The ultrastructure of sperm morulae and of mature spermatozoa is described. The structure of spermatozoa is shown to be primitive with a single flagellum which appears to be coiled at its distal end. The phagocytosis of free spermatozoa by coelomocytes is also described and it is suggested that these may play a role in the resorption of unspawned gametes in vivo.

  16. Conservation of eelgrass (Zostera marina genetic diversity in a mesocosm-based restoration experiment.

    Directory of Open Access Journals (Sweden)

    Brian S Ort

    Full Text Available Eelgrass (Zostera marina forms the foundation of an important shallow coastal community in protected estuaries and bays. Widespread population declines have stimulated restoration efforts, but these have often overlooked the importance of maintaining the evolutionary potential of restored populations by minimizing the reduction in genetic diversity that typically accompanies restoration. In an experiment simulating a small-scale restoration, we tested the effectiveness of a buoy-deployed seeding technique to maintain genetic diversity comparable to the seed source populations. Seeds from three extant source populations in San Francisco Bay were introduced into eighteen flow-through baywater mesocosms. Following seedling establishment, we used seven polymorphic microsatellite loci to compare genetic diversity indices from 128 shoots to those found in the source populations. Importantly, allelic richness and expected heterozygosity were not significantly reduced in the mesocosms, which also preserved the strong population differentiation present among source populations. However, the inbreeding coefficient F IS was elevated in two of the three sets of mesocosms when they were grouped according to their source population. This is probably a Wahlund effect from confining all half-siblings within each spathe to a single mesocosm, elevating F IS when the mesocosms were considered together. The conservation of most alleles and preservation of expected heterozygosity suggests that this seeding technique is an improvement over whole-shoot transplantation in the conservation of genetic diversity in eelgrass restoration efforts.

  17. Com'è profondo il mare Gli uominiche lo misurano, l'Istituto Idrografico della Marina

    Directory of Open Access Journals (Sweden)

    Alessandro Nobili

    2014-03-01

    Full Text Available Measuring sea depths: the Italian hydrographic InstituteSince 1873 the Italian Hydrographic Institute (Istituto Idrografico della Marina - IIM has been involved in sea depth measuring in order to improve safety of navigation. The main mission of the institute is to provide hydrographic services for waters of Italian national responsibility required by the International Convention for the Safety of Life at Sea (SOLAS. This role requires the coordination and determination of policy and standards which covers both hydrographic surveying and charting, as well as contributing tothe coordination, exchange and standards related to geospatial data in general. IIM’s traditions and methods take their origins from the pioneers of hydrography; in this paper the author briefl y describes the main stages in IIM’s history, passing throught scientifi c and international activities and concludine with challenges and prospects of digital era.

  18. Copper treatment during storage reduces Phytophthora and Halophytophthora infection of Zostera marina seeds used for restoration

    Science.gov (United States)

    Govers, Laura L.; van der Zee, Els M.; Meffert, Johan P.; van Rijswick, Patricia C. J.; Man in ‘t Veld, Willem A.; Heusinkveld, Jannes H. T.; van der Heide, Tjisse

    2017-01-01

    Restoration is increasingly considered an essential tool to halt and reverse the rapid decline of vital coastal ecosystems dominated by habitat-forming foundation species such as seagrasses. However, two recently discovered pathogens of marine plants, Phytophthora gemini and Halophytophthora sp. Zostera, can seriously hamper restoration efforts by dramatically reducing seed germination. Here, we report on a novel method that strongly reduces Phytophthora and Halophytophthora infection of eelgrass (Zostera marina) seeds. Seeds were stored in seawater with three different copper sulphate concentrations (0.0, 0.2, 2.0 ppm) crossed with three salinities (0.5, 10.0, 25.0 ppt). Next to reducing seed germination, infection significantly affected cotyledon colour: 90% of the germinated infected seeds displayed a brown cotyledon upon germination that did not continue development into the seedling stage, in contrast to only 13% of the germinated non-infected seeds. Copper successfully reduced infection up to 86% and the 0.2 ppm copper sulphate treatment was just as successful as the 2.0 ppm treatment. Infection was completely eliminated at low salinities, but green seed germination was also dramatically lowered by 10 times. We conclude that copper sulphate treatment is a suitable treatment for disinfecting Phytophthora or Halophytophthora infected eelgrass seeds, thereby potentially enhancing seed-based restoration success. PMID:28225072

  19. Antimicrobial activity of Avicennia marina extracts ethanol, methanol & glycerin against Penicillium digitatum (citrus green mold

    Directory of Open Access Journals (Sweden)

    Behrooz Alizadeh Behbahani

    2013-01-01

    Full Text Available Finding natural antimicrobial compound with minimum side effects on health the is important because of microorganisms are more antibiotics resistance. Avicenniaceae family is a member of true mangrove plants which has one genus, 11 species and several sub species. Avicennia marina (Forssk. Vierh is the most current species among these plants in Iranian mangrove forest. In this study, mangrove leaves were dried in shadow and appropriate condition. After extraction with ethanol 96 degree, methanol 96 degree and 20% glycerin antimicrobial effect of extract were determined by "screening antimicrobial activity" and "disk agar diffusion test" in 20, 40, 60 and 80 Percent concentration of the extract against Penicillium digitatum. The results showed that mangrove leaf extract in screening antimicrobial activity method in 2000 μg/ml, were inhibited Penicillium digitatum of growth. In "disk agar diffusion test, mangrove extract, in 20, 40, 60 and 80 Percent concentration, the mentioned extract were shown inhibition effect on mold pathogen growth. Ethanol 96 degree extract was more effective than methanol 96 degree and 20% glycerin extract as antimicrobial against on Penicillium digitatum (p Results showed extract of mangrove can be used as natural antimicrobial in food products.

  20. Assessing establishment success of Zostera marina transplants through measurements of shoot morphology and growth

    Science.gov (United States)

    Li, Wen-Tao; Kim, Jong-Hyeob; Park, Jung-Im; Lee, Kun-Seop

    2010-07-01

    Since significant seagrass declines have been reported worldwide, numerous seagrass restoration projects through transplantation have been attempted in recent decades. In this study, Zostera marina shoots were transplanted into Jindong Bay on the southern coast of Korea in November 2006 to assess establishment success of the transplants to a new transplant environment. Shoot density, individual shoot weight, productivity, and morphological characteristics of transplants and reference plants in the vicinity of the planting site were monitored monthly for 13 months. Although shoot size of transplants was smaller than that of reference plants at the start of transplantation, individual shoot weight, leaf width, shoot height, and rhizome diameter of transplants increased rapidly, reaching even higher values than those of reference plants 5 months after transplantation. These results suggest that eelgrass transplants established morphologically 5 months after transplantation. Shoot productivity of transplants was lower than that of reference population during the first 5-6 months following transplantation, but became higher than that of reference population 6 months after transplantation. The higher transplant productivity was likely due to the lower shoot density at the transplant site than that at the reference population. Rapid changes in shoot morphology and growth of transplants indicated that eelgrass transplants had great morphological plasticity and established successfully in the new environment within 5-6 months. In addition to survival rates of transplants, monitoring of shoot morphology and growth appeared to be an effective approach for accurate assessment of the establishment success of eelgrass transplant.

  1. Caracterización parcial y espectro antimicrobiano de substancias inhibitorias producidas por Alteromonas marinas

    Directory of Open Access Journals (Sweden)

    Jorge León

    2014-06-01

    Full Text Available Se caracterizan parcialmente substancias inhibitorias producidas por cepas marinas del género Alteromonas spp. Pruebas de precipitación de extractos crudos de sobrenadantes de las cepas N22.C y N11.6 con concentraciones saturantes de sulfato de amonio y filtrados en columnas de Sephadex G-25 muestran la producción de substancias inhibitorias (SI de naturaleza proteinácea. Otros ensayos de caracterización revelan que dichas substancias tienen un amplio espectro de actividad antibiótica frente a cepas de colección patógenas de peces, moluscos y crustáceos. Asimismo, muestran a las SI como termosensibles a 90oC en 45 min y con capacidad de mantener estabilidad inhibitoria dentro, del rango de pH de 3,0 a 9,0 hasta por 15 min. La actividad antibiótica de las substancias frente a Vibrio anguillarum NCMB 2133, V. anguillarum ATCC 19264 y Aeromonas salmonicida 67,79 fueron comparativamente equivalentes a 30 ppm del antibiótico oxitetraciclina (OTC.

  2. Influence of Temperature and Salinity on Germination of Eelgrass (Zostera marina L.) Seeds

    Institute of Scientific and Technical Information of China (English)

    PAN Jinhua; YANG Guanpin; JIANG Xin; LI Xiaojie; CONG Yizhou; ZHANG Zhuangzhi; LI Zhiling; ZHOU Weili; HAN Houwei; LUO Shiju

    2011-01-01

    Seagrass restoration as part of ocean ecosystem protection has been launched for many years all over the world, but intensive research on this subject in China has just begun in recent years. Seed broadcasting has been widely accepted as the most potentially useful method for seagrass restoration over large areas. We examined the influence of key environmental factors on seed germination to help promote eelgrass bed restoration. Under anoxic conditions, the influence of temperature and salinity on the germination rate of eelgrass (Zostera marina L.) seeds was examined at different combinations of four temperatures (4, 9, 14, and 24℃) and nine salinities (5 to 45, increment of 5). The effect of significant interaction of temperature and salinity on germination rate was observed (ANOVA)(P<0.001). The highest germination rate (83.3 ±3.5)% was reached in 8 weeks at 14℃ and salinity 5. Higher temperature significantly increased the germination rate at salinity 5 (P<0.001) during the whole observation period except for 24℃,while lower salinity significantly increased the germination rate at 14℃ (P<0.001). Although significant interaction was found between temperature and salinity (P<0.001), the influence of salinity was stronger than that of temperature for the germination of eelgrass seeds. These results provide useful information for the propagation of artificial seedlings for seagrass restoration in China.

  3. Petróleo, seguridad ambiental y exploración petrolera marina en Colombia

    Directory of Open Access Journals (Sweden)

    Avellaneda Cusaría, Alfonso

    2005-01-01

    Full Text Available Este artículo reseña un siglo de las actividades petroleras en Colombia, sus consecuencias en los territorios indígenas, así como los riesgos ambientales y para la salud, destacando por -otra parte- el papel que han asumido algunas compañías para controlar esos riesgos. Se discute las implicaciones sociales y ambientales, directas e indirectas, de las distintas fases de las actividades petroleras en la parte continental del país, y sus relaciones históricas con los procesos de violencia donde ha habido explotación petrolera desde el siglo XX. Finalmente, se abre una discusión sobre la nueva política petrolera del Estado colombiano, con la exploración costa fuera y la ausencia de control ambiental para proteger los ecosistemas que subyacen la licitación de áreas para los próximos años, sin asumir el derecho internacional en la protección marina.

  4. Coating of Sulfonic Silica onto Magnetite from Marina Beach Iron sand, Semarang, Indonesia

    Science.gov (United States)

    Azmiyawati, C.; Suyati, L.; Taslimah; Anggraeni, R. D.

    2017-02-01

    The mineral iron oxide is the main component of sand iron that are abundant in nature. Mineral iron oxide not yet widely applied into more useful products. The main component of iron ore is magnetite. Magnetite can be used as a basic ingredient in the manufacture of magnetite-modified silica adsorbent sulfonate. In this research, the adsorbent made from sulfonic functionalized silica-coated magnetic particle has been successfully produced, with the magnetite was obtained from iron sand at Marina Beach, Semarang Indonesia. This adsorbent was then used as a metal ion preconcentration media. From the research that it was found that the sulfonic has been bound to the silica marked by the emergence of element S on EDX. Whilst, the evidence that silica has coated on the magnetite could be seen from the SEM images which showed the morphology of sulfonic functionalized silica-coated magnetic particles were larger than the sulfonic functionalized silica without magnetite. From the DSC results showed that the addition of magnetite on sulfonic functionalized silica did not change the heat resistance of the sulfonic functionalized silica. Based on the XRD patterns show that magnetite sulfonate silica was formed.

  5. Larger body size at metamorphosis enhances survival, growth and performance of young cane toads (Rhinella marina.

    Directory of Open Access Journals (Sweden)

    Elisa Cabrera-Guzmán

    Full Text Available Body size at metamorphosis is a key trait in species (such as many anurans with biphasic life-histories. Experimental studies have shown that metamorph size is highly plastic, depending upon larval density and environmental conditions (e.g. temperature, food supply, water quality, chemical cues from conspecifics, predators and competitors. To test the hypothesis that this developmental plasticity is adaptive, or to determine if inducing plasticity can be used to control an invasive species, we need to know whether or not a metamorphosing anuran's body size influences its subsequent viability. For logistical reasons, there are few data on this topic under field conditions. We studied cane toads (Rhinella marina within their invasive Australian range. Metamorph body size is highly plastic in this species, and our laboratory studies showed that larger metamorphs had better locomotor performance (both on land and in the water, and were more adept at catching and consuming prey. In mark-recapture trials in outdoor enclosures, larger body size enhanced metamorph survival and growth rate under some seasonal conditions. Larger metamorphs maintained their size advantage over smaller siblings for at least a month. Our data support the critical but rarely-tested assumption that all else being equal, larger body size at metamorphosis is likely to enhance an individual's long term viability. Thus, manipulations to reduce body size at metamorphosis in cane toads may help to reduce the ecological impact of this invasive species.

  6. Co-cultivation--a powerful emerging tool for enhancing the chemical diversity of microorganisms.

    Science.gov (United States)

    Marmann, Andreas; Aly, Amal H; Lin, Wenhan; Wang, Bingui; Proksch, Peter

    2014-02-17

    Marine-derived bacteria and fungi are promising sources of novel bioactive compounds that are important for drug discovery programs. However, as encountered in terrestrial microorganisms there is a high rate of redundancy that results in the frequent re-discovery of known compounds. Apparently only a part of the biosynthetic genes that are harbored by fungi and bacteria are transcribed under routine laboratory conditions which involve cultivation of axenic microbial strains. Many biosynthetic genes remain silent and are not expressed in vitro thereby seriously limiting the chemical diversity of microbial compounds that can be obtained through fermentation. In contrast to this, co-cultivation (also called mixed fermentation) of two or more different microorganisms tries to mimic the ecological situation where microorganisms always co-exist within complex microbial communities. The competition or antagonism experienced during co-cultivation is shown to lead to a significantly enhanced production of constitutively present compounds and/or to an accumulation of cryptic compounds that are not detected in axenic cultures of the producing strain. This review highlights the power of co-cultivation for increasing the chemical diversity of bacteria and fungi drawing on published studies from the marine and from the terrestrial habitat alike.

  7. Proteome of Gluconacetobacter diazotrophicus co-cultivated with sugarcane plantlets.

    Science.gov (United States)

    dos Santos, Marise Fonseca; Muniz de Pádua, Vânia Lúcia; de Matos Nogueira, Eduardo; Hemerly, Adriana Silva; Domont, Gilberto Barbosa

    2010-03-10

    Gluconacetobacter diazotrophicus is a micro-aerobic bacterium able to fix atmospheric nitrogen in endophytic mode. A proteomic approach was used to analyze proteins differentially expressed in the presence and absence of sugarcane plantlets. Two-dimensional gel electrophoresis (2-DE) showed 42 spots with altered levels of expression. Analysis of these spots by matrix-assisted laser desorption ionization time-of-flight in tandem (MALDI-TOF-TOF) identified 38 proteins. Differentially expressed proteins were associated with carbohydrate and energy metabolism, folding, sorting and degradation processes, and transcription and translation. Among proteins expressed in co-cultivated bacteria, four belong to membrane systems; others, like a transcription elongation factor (GreA), a 60 kDa chaperonin (GroEL), and an outer membrane lipoprotein (Omp16) have also been described in other plant-bacteria associations, indicating a common protein expression pattern as a result of symbiosis. A high protein content of 60kDa chaperonin isoforms was detected as non-differentially expressed proteins of the bacteria proteome. These results allow the assessment of the physiological significance of specific proteins to G. diazotrophicus metabolism and to the pathways involved in bacteria-host endophytic interaction.

  8. Use of diluted urine for cultivation of Chlorella vulgaris.

    Science.gov (United States)

    Jaatinen, Sanna; Lakaniemi, Aino-Maija; Rintala, Jukka

    2016-01-01

    Our aim was to study the biomass growth of microalga Chlorella vulgaris using diluted human urine as a sole nutrient source. Batch cultivations (21 days) were conducted in five different urine dilutions (1:25-1:300), in 1:100-diluted urine as such and with added trace elements, and as a reference, in artificial growth medium. The highest biomass density was obtained in 1:100-diluted urine with and without additional trace elements (0.73 and 0.60 g L(-1), respectively). Similar biomass growth trends and densities were obtained with 1:25- and 1:300-diluted urine (0.52 vs. 0.48 gVSS L(-1)) indicating that urine at dilution 1:25 can be used to cultivate microalgal based biomass. Interestingly, even 1:300-diluted urine contained sufficiently nutrients and trace elements to support biomass growth. Biomass production was similar despite pH-variation from < 5 to 9 in different incubations indicating robustness of the biomass growth. Ammonium formation did not inhibit overall biomass growth. At the beginning of cultivation, the majority of the biomass consisted of living algal cells, while towards the end, their share decreased and the estimated share of bacteria and cell debris increased.

  9. Intracellular Bacteria in Protozoa

    Science.gov (United States)

    Görtz, Hans-Dieter; Brigge, Theo

    Intracellular bacteria in humans are typically detrimental, and such infections are regarded by the patients as accidental and abnormal. In protozoa it seems obvious that many bacteria have coevolved with their hosts and are well adapted to the intracellular way of life. Manifold interactions between hosts and intracellular bacteria are found, and examples of antibacterial resistance of unknown mechanisms are observed. The wide diversity of intracellular bacteria in protozoa has become particularly obvious since they have begun to be classified by molecular techniques. Some of the bacteria are closely related to pathogens; others are responsible for the production of toxins.

  10. Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants

    DEFF Research Database (Denmark)

    Currie, Cameron R; Poulsen, Michael; Mendenhall, John;

    2006-01-01

    Attine ants engage in a quadripartite symbiosis with fungi they cultivate for food, specialized garden parasites, and parasite-inhibiting bacteria. Molecular phylogenetic evidence supports an ancient host-pathogen association between the ant-cultivar mutualism and the garden parasite. Here we sho...... in other ant genera that do not grow fungus, indicate that the bacteria have an ancient and coevolved association with the ants, their fungal cultivar, and the garden parasite.......Attine ants engage in a quadripartite symbiosis with fungi they cultivate for food, specialized garden parasites, and parasite-inhibiting bacteria. Molecular phylogenetic evidence supports an ancient host-pathogen association between the ant-cultivar mutualism and the garden parasite. Here we show...... that ants rear the antibiotic-producing bacteria in elaborate cuticular crypts, supported by unique exocrine glands, and that these structures have been highly modified across the ants' evolutionary history. This specialized structural evolution, together with the absence of these bacteria and modifications...

  11. Phylogenetic diversity and phenotypic characterization of cultivable bacterioplankton isolated from polar oceans

    Institute of Scientific and Technical Information of China (English)

    ZENG Yinxin; LI Huirong; YU Yong; CHEN Bo; ZHENG Tianling

    2007-01-01

    A set of 27 marine planktonic bacteria isolated from the polar regions was characterized by 16S rDNA sequencing and physiological and biochemical testing. More than half of these bacteria were positive for caseinase, gelatinase and β-glucosidase, and could utilize glucose, maltose or malic acid as carbon source for cell growth. Twelve isolates expressed nitrate reduction activities. Except for one antarctic isolate BSw10175 belonging to Actinobacteria phylum, these isolates were classified as γ-Proteobacteria, suggesting that γ-Proteobacteria dominated in cultivable marine bacterioplankton at both poles. Genus Pseudoalteromonas was the predominant group in the Chukchi Sea and the Bering Sea, and genus Shewanella dominated in cultivable bacterioplankton in the Prydz Bay. With sequence similarities above 97%, genus Psychrobacter was found at both poles. These 27 isolates were psychrotolerant, and significant 16S rDNA sequence similarities were found not only between arctic and antarctic marine bacteria ( > 99% ),but also between polar marine bacteria and bacteria from other aquatic environments ( ≥98.8% ) , including temperate ocean,deep sea, pond and lake, suggesting that in the polar oceans less temperature-sensitive bacteria may be cosmopolitan and have a bipolar, even global, distribution at the species level.

  12. Optimization of isolation and cultivation of bacterial endophytes through addition of plant extract to nutrient media.

    Science.gov (United States)

    Eevers, N; Gielen, M; Sánchez-López, A; Jaspers, S; White, J C; Vangronsveld, J; Weyens, N

    2015-07-01

    Many endophytes have beneficial effects on plants and can be exploited in biotechnological applications. Studies hypothesize that only 0.001-1% of all plant-associated bacteria are cultivable. Moreover, even after successful isolations, many endophytic bacteria often show reduced regrowth capacity. This research aimed to optimize isolation processes and culturing these bacteria afterwards. We compared several minimal and complex media in a screening. Beside the media themselves, two gelling agents and adding plant extract to media were investigated to enhance the number and diversity of endophytes as well as the growth capacity when regrown after isolation. In this work, 869 medium delivered the highest numbers of cultivable bacteria, as well as the highest diversity. When comparing gelling agents, no differences were observed in the numbers of bacteria. Adding plant extract to the media lead to a slight increase in diversity. However, when adding plant extract to improve the regrowth capacity, sharp increases of viable bacteria occurred in both rich and minimal media.

  13. Application of Hazard Analysis and Critical Control Points (HACCP) to the Cultivation Line of Mushroom and Other Cultivated Edible Fungi.

    Science.gov (United States)

    Pardo, José E; de Figueirêdo, Vinícius Reis; Alvarez-Ortí, Manuel; Zied, Diego C; Peñaranda, Jesús A; Dias, Eustáquio Souza; Pardo-Giménez, Arturo

    2013-09-01

    The Hazard analysis and critical control points (HACCP) is a preventive system which seeks to ensure food safety and security. It allows product protection and correction of errors, improves the costs derived from quality defects and reduces the final overcontrol. In this paper, the system is applied to the line of cultivation of mushrooms and other edible cultivated fungi. From all stages of the process, only the reception of covering materials (stage 1) and compost (stage 3), the pre-fruiting and induction (step 6) and the harvest (stage 7) have been considered as critical control point (CCP). The main hazards found were the presence of unauthorized phytosanitary products or above the permitted dose (stages 6 and 7), and the presence of pathogenic bacteria (stages 1 and 3) and/or heavy metals (stage 3). The implementation of this knowledge will allow the self-control of their productions based on the system HACCP to any plant dedicated to mushroom or other edible fungi cultivation.

  14. Vegetación marina en la elaboración de bloques multinutritivos para la alimentación de rumiantes

    OpenAIRE

    Arturo F. Castellanos Ruelas; Félix Cauich Huchim; Luis A. Chel Guerrero; J. Gabriel Rosado Rubio

    2010-01-01

    El objetivo del presente trabajo fue evaluar el efecto de la incorporación de vegetación marina, melaza, urea e hidróxido de calcio (CaOH) en un bloque multinutritivo (BM) sobre su valor nutricio y su dureza. Se colectó vegetación marina que llegó en arribazón a las costas de Yucatán. Este material se lavó con agua dulce y se deshidrató al sol. Se elaboraron BM incorporando un 9.5 % de vegetación marina, además de cascarilla de soya, maíz molido, melaza, ortofosfato de calcio, sal común, ácid...

  15. Changes in Organic, Inorganic contents, Carbon Nitrogen ratio in decomposing Avicennia marina and Rhizophora mucronata leaves on tidal mudf lats in Hajambro creek, Indus delta, Pakistan

    Directory of Open Access Journals (Sweden)

    Zafar Farooqui

    2014-01-01

    Full Text Available Leaf decomposition of Avicennia marina (Forskal Vierh in Denkschr and Rhizophora mucronata (Poiret was studied in situ using litterbag s in Hajambro creek, Indus delta. A single exponential model was presented, which best described the rate of decomposition for both the species. The rate of decomposition was species specific, A. marina leaves decomposed slower than the R. mucronata (p<0.001. The time in days required for 50% loss of the initial dry mass (t1/2 was 49.55 days for the A. marina and 44.43 days in case of R. mucronata. The organic content in the leaves was high initially but decresed gradually during decomposition, which is negatively correlated with inorganic contents. This study will help in the management and conservation of mangrove ecosystem of Hajambro creek, Indus delta, Pakistan.

  16. Comparison of Paraffin and Diesel Oil as Cultivation Medium Supplements for Preparing a Hydrocarbon-Degrading Bacterial Biomass

    Directory of Open Access Journals (Sweden)

    Dokukins Eduards

    2016-05-01

    Full Text Available The effect of liquid paraffin and diesel oil as nutrient amendments for hydrocarbon-degrading bacteria was compared. Different parameters were analyzed - optical density of bacterial suspension, oxygen consumption by biomass, morphology of bacteria, etc. In some experiments the paraffin was more preferable for microorganisms, but in other tests the results for both substances were similar. The influence of the comparable substances strongly depends on cultivation conditions.

  17. Polypropylene Bundle Attached Multilayered Stigeoclonium Biofilms Cultivated in Untreated Sewage Generate High Biomass and Lipid Productivity.

    Science.gov (United States)

    Kim, Byung-Hyuk; Kim, Dong-Ho; Choi, Jung-Woon; Kang, Zion; Cho, Dae-Hyun; Kim, Ji-Young; Oh, Hee-Mock; Kim, Hee-Sik

    2015-09-01

    The potential of microalgae biofuel has not been realized because of the low productivity and high costs associated with the current cultivation systems. In this study, a new low-cost and transparent attachment material was tested for cultivation of a filamentous algal strain, Stigeoclonium sp., isolated from wastewater. Initially, the different materials tested for Stigeoclonium cultivation in untreated wastewater were nylon mesh, polyethylene mesh, polypropylene bundle (PB), polycarbonate plate, and viscose rayon. Among the materials tested, PB led to a firm attachment, high biomass (53.22 g/m(2), dry cell weight), and total lipid yield (5.8 g/m(2)) with no perceivable change in FAME profile. The Stigeoclonium-dominated biofilm consisted of bacteria and extracellular polysaccharide, which helped in biofilm formation and for effective wastewater treatment (viz., removal efficiency of total nitrogen and total phosphorus corresponded to ~38% and ~90%, respectively). PB also demonstrated high yields under multilayered cultivation in a single reactor treating wastewater. Hence, this system has several advantages over traditional suspended and attached systems, with possibility of increasing areal productivity three times using Stigeoclonium sp. Therefore, multilayered attached growth algal cultivation systems seem to be the future cultivation model for large-scale biodiesel production and wastewater treatment.

  18. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina

    Science.gov (United States)

    2015-01-01

    Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU) possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide-reaching effects on

  19. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina.

    Directory of Open Access Journals (Sweden)

    Stacey DeAmicis

    Full Text Available Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide

  20. Elective culture of bacteria used in bioleaching on pyrrhotite

    Institute of Scientific and Technical Information of China (English)

    邱冠周; 覃文庆; 蓝卓越; 黎维中

    2003-01-01

    Elective culture of bacteria on pyrrhotite was researched, and the selected bacteria were tested on bi-oleaching of marmatite and zinc sulfide ore. The results show that the microorganism cultured on pyrrhotite with va-rious S/Fe ratios is a mixed culture of thiobacillus ferrooxidans and thiobacillus thiooxidans, of which the integral ac-tivity and the oxidation capability of Fe2+ and S are enhanced. With the high Fe and low S content of pyrrhotite, the oxida-tion capacity of ferrous ion is improved; on the contrary, the oxidation capacity of sulfur is advanced. The bioleaching ca-pacity of bacteria cultured on marmatite is better than that of the bacteria cultivated by conventional methods.

  1. Improving Former Shifted Cultivation Land Using Wetland Cultivation in Kapuas District, Central Kalimantan

    Directory of Open Access Journals (Sweden)

    Wahyudi Wahyudi

    2013-11-01

    Full Text Available Degraded forest area in Kalimantan could be caused by shifted cultivation activity that be conducted by local peoples in the surrounding forest areas. Efforts to improve the former shifted cultivation area (non productive land is developing the settled cultivation by use of irrigation system, better paddy seed, land processing, fertilizing, spraying pesticide, weeding, and better acces to the market. Local peoples, especially in Kalimantan, has been depended their food on the shifted cultivation pattern since the long time ago. This tradition could cause forest damage, forest fire, forest degradation, deforestation, and lose out of children education because they were following shifted cultivation activity although its space is very far from their home. This research was aimed to improve former shifted cultivation lands using wetland cultivation in order to improve land productivity and to support food security in the local community. This research was administratively located in Tanjung Rendan Village, Kapuas Hulu Sub-Ddistrict, Kapuas District, Central Kalimantan Province, Indonesia. Data of rice yield from settled cultivation and shifted cultivation were got from 15 households that was taking by random at 2010 to 2011. Homogeneity test, analysis of variants, and least significant different (LSD test using SPSS 15.0 for Windows. Result of this research showed that paddy yield at settled cultivation was significantly different and better than shifted cultivation at 0.05 level. LSD test also indicated that all paddy yields from settled cultivation were significantly different compare to shifted cultivation at the 0.05 level. The community in Tanjung Rendan Villages preferred settled cultivation than shifted cultivation, especially due to higher paddy production. Profit for settled cultivation was IDR10.95 million ha-1, meanwhile profit for shifted cultivation was just IDR 2.81 million ha-1 only. Settled cultivation pattern could to improve

  2. Differential Responses of Soil Microbial Community to Four-Decade Long Grazing and Cultivation in a Semi-Arid Grassland

    Directory of Open Access Journals (Sweden)

    Yating He

    2017-01-01

    Full Text Available Grazing and cultivation are two important management practices worldwide that can cause significant soil organic carbon (SOC losses. However, it remains elusive how soil microbes have responded to soil carbon changes under these two practices. Based on a four-decade long field experiment, this study investigated the effects of grazing and cultivation on SOC stocks and microbial properties in the semi-arid grasslands of China. We hypothesize that grazing and cultivation would deplete SOC and depress microbial activities under both practices. However, our hypotheses were only partially supported. As compared with the adjacent indigenous grasslands, SOC and microbial biomass carbon (MBC were decreased by 20% or more under grazing and cultivation, which is consistent with the reduction of fungi abundance by 40% and 71%, respectively. The abundance of bacteria and actinomycetes was decreased under grazing but increased under cultivation, which likely enhanced microbial diversity in cultivation. Invertase activity decreased under the two treatments, while urease activity increased under grazing. These results suggest that nitrogen fertilizer input during cultivation may preferentially favor bacterial growth, in spite of SOC loss, due to rapid decomposition, while overgrazing may deteriorate the nitrogen supply to belowground microbes, thus stimulating the microbial production of nitrogen acquisition enzymes. This decade-long study demonstrated differential soil microbial responses under grazing and cultivation and has important applications for better management practices in the grassland ecosystem.

  3. Análisis preliminar de la estructura primaria y secundaria del ARNtTrp en tortugas marinas

    OpenAIRE

    Harvey Infante-Rojas; Javier Hernández-Fernández

    2015-01-01

    Actualmente existen siete especies de tortugas marinas, todas amenazadas o en riesgo inminente de extinción. Los estudios con ADN mitocondrial han permitido hacer acercamientos sobre filogenia, evolución, rutas migratorias y centros de dispersión, además para la identificación de polimorfismos y haplotipos, siendo base para planes de manejo y conservación. El presente estudio representa la primera descripción comparada de la estructura primaria y secundaria del ARNtTrp mitocondrial en tortuga...

  4. Estudio de viabilidad de una infraestructura marina para monitorizar las interacciones entre las actividades industriales y el medio ambiente

    OpenAIRE

    Mánuel González, Àlvar

    2012-01-01

    El objeto de este proyecto es definir, diseñar y construir una instalación marina prototipo capaz de monitorizar las interacciones entre las actividades industriales y el medio ambiente. Con tal fin se propone instalar en el mar un equipamiento de adquisición de parámetros ambientales. El equipamiento de adquisición, como el resto de sistemas que sustentan la infraestructura, tales como el sistema de alimentación, comunicación y control, se encontrarán soportados por un sistema de flotació...

  5. Contribución al estudio químico de tres especies de algas marinas peruanas

    OpenAIRE

    Acha de la Cruz, Otilia

    1995-01-01

    En el presente trabajo de Investigación, se hicieron estudios químicos en tres especies de algas marinas peruanas. En la especie Macrocystis piryfera se hicieron estudios de compuestos orgánicos e inorgánicos. Respecto a los compuestos inorgánicos, se determinó un gran contenido de minerales, (esta especie es un suplemento ideal para fertilizantes en la agricultura). Respecto a los compuestos orgánicos se hizo un estudio con variación estacional del contenido del ácido algínico, mani...

  6. Effects of filamentous macroalgae on growth and survival of eelgrass, Zostera marina, seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Krause-Jensen, Dorte; Olesen, Birgit

    Seedling survival and patch establishment is a major bottle-neck for eelgrass (Zostera marina) re-colonization as mortality rates among the young seedlings are high, even in areas where conditions should support survival. We here focus on the potential negative effects of drifting macroalgal mats...... of oxygen and sulphide and their diurnal variations in the mats were measured using microelectrodes. Seedling growth rates declined 99 % from controls to the high C. linum cover treatment and 55 % to the high imitation algae treatment. But due to high water flow rates anoxic conditions failed to develop...

  7. COMPORTAMIENTO ESTACIONAL DE LA CAPA DE MEZCLA MARINA EN LA REGIÓN NORTE DEL GOLFO DE CALIFORNIA

    OpenAIRE

    Emilio Palacios Hernández; Laura Carrillo B.

    2016-01-01

    Se realiza l a descripción de la profundidad de la capa de mezcla marina superficial (PCM) en la Región Norte del Golfo de California (RNGC), utilizando datos hidrográficos obtenidos en 17 cruceros oceanográficos desde 1971 hasta 1996. La profundidad de la capa se estima directament e de los perfiles de densidad . El promedio de distribución espacial muestra un máximo bien definido en la salida del canal de Ballenas y un mínimo en las costas de Sonora y de Baja ...

  8. El papel del voluntariado en la conservación de tortugas marinas en la península de Guanahacabibes, Cuba

    OpenAIRE

    Azanza Ricardo, Julia; Ibarra Martín, Maria Elena; Cobián Rojas, Dorka

    2014-01-01

    El presente artículo está encaminado a caracterizar las etapas de trabajo del proyecto universitario destinado a la conservación de las tortugas marinas en Cuba como una iniciativa para combinar la investigación y los esfuerzos de conservación, así como destacar el papel de los colaboradores voluntarios en estas tareas. El “Proyecto Universitario para el Estudio y Conservación de las tortugas marinas en Cuba”, que se inició en el año 1998, se ha desarrollado en tres etapas con un papel cada v...

  9. Análisis de la biodiversidad de algas marinas situadas entre Uaymitún y Chuburná, Yucatán

    OpenAIRE

    I. Sánchez-Molina; J. González-Ceballos; C. Zetina-Moguel; R. Casanova-Cetz

    2007-01-01

    Las algas marinas participan en los equilibrios físico-químicos, el ciclo del carbono y sustentan tramas alimenticias de ambientes costeros. A pesar de su importancia los estudios realizados de este grupo de organismos en Yucatán son escasos. El objetivo de este trabajo es contribuir al conocimiento de la biodiversidad de algas marinas en la zona costera de Yucatán, comprendida entre Uaymitún y Chuburná, con la finalidad de fundamentar estudios de ingeniería ambiental. Se hicieron recorridos ...

  10. Análisis y diseño de una intranet para la Marina de Guerra del Perú

    OpenAIRE

    Alvarez Herrera, Cesar Manuel

    2000-01-01

    La Marina de Guerra del Perú tiene como misión garantizar la independencia, soberanía e integridad territorial, contribuyendo al desarrollo económico y social del país. Dada la naturaleza de sus funciones, esta Institución cuenta con dependencias en Lima, Callao y en provincias. Un elemento necesario en la toma de decisiones es la obtención de información en el lugar adecuado y tiempo oportuno. Para el cumplimiento de su misión la Marina cuenta con una red de comunicaciones a nivel naciona...

  11. Consumo de algas marinas: su influencia en el valor nutritivo de la dieta y en diversos parámetros fisiológicos

    OpenAIRE

    Millán Lence, Rosendo

    2016-01-01

    En general, las algas marinas son una buena fuente de fibra al mismo tiempo que proporcionan vitaminas, minerales y nutracéuticos de interés para la alimentación humana. Por ello, en este estudio se analiza cómo influye la ingesta de las algas marinas Porphyra purpurea, Undaria pinnatifida, Himanthalia elongata, Ulva rigida y Codium tomentosum en la calidad nutritiva del alimento y en diversos parámetros hemáticos. Debido a que las enzimas implicadas en los procesos digestivos se adaptan a la...

  12. Valoración económica del buceo como estrategia de uso sostenible de la biodiversidad marina, Archipielago de San Andres y Providencia, Caribe Colombiano.

    OpenAIRE

    James Cruz. Johannie L.; Márquez Calle Germán

    2011-01-01

    El buceo es un uso alternativo y no consuntivo de la biodiversidad marina que, debidamente practicado, tiene bajo impacto ambiental, estimula la conservación de los arrecifes y es una opción económica para habitantes de áreas arrecifales o con potencial para el buceo. El archipiélago de San Andrés, Providencia y Santa Catalina, declarado por UNESCO Reserva Mundial de la Biosfera Seafl ower, con 65.000 km2 de Áreas Marinas Protegidas y un extenso complejo arrecifal coralino, tiene condiciones ...

  13. Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers

    Directory of Open Access Journals (Sweden)

    Schneider Horacio

    2011-09-01

    Full Text Available Abstract Background The classical perspective that interspecific hybridization in animals is rare has been changing due to a growing list of empirical examples showing the occurrence of gene flow between closely related species. Using sequence data from cyt b mitochondrial gene and three intron nuclear genes (RPL9, c-myc, and RPL3 we investigated patterns of nucleotide polymorphism and divergence between two closely related toad species R. marina and R. schneideri. By comparing levels of differentiation at nuclear and mtDNA levels we were able to describe patterns of introgression and infer the history of hybridization between these species. Results All nuclear loci are essentially concordant in revealing two well differentiated groups of haplotypes, corresponding to the morphologically-defined species R. marina and R. schneideri. Mitochondrial DNA analysis also revealed two well-differentiated groups of haplotypes but, in stark contrast with the nuclear genealogies, all R. schneideri sequences are clustered with sequences of R. marina from the right Amazon bank (RAB, while R. marina sequences from the left Amazon bank (LAB are monophyletic. An Isolation-with-Migration (IM analysis using nuclear data showed that R. marina and R. schneideri diverged at ≈ 1.69 Myr (early Pleistocene, while R. marina populations from LAB and RAB diverged at ≈ 0.33 Myr (middle Pleistocene. This time of divergence is not consistent with the split between LAB and RAB populations obtained with mtDNA data (≈ 1.59 Myr, which is notably similar to the estimate obtained with nuclear genes between R. marina and R. schneideri. Coalescent simulations of mtDNA phylogeny under the speciation history inferred from nuclear genes rejected the hypothesis of incomplete lineage sorting to explain the conflicting signal between mtDNA and nuclear-based phylogenies. Conclusions The cytonuclear discordance seems to reflect the occurrence of interspecific hybridization between these

  14. Genomics of Probiotic Bacteria

    Science.gov (United States)

    O'Flaherty, Sarah; Goh, Yong Jun; Klaenhammer, Todd R.

    Probiotic bacteria from the Lactobacillus and Bifidobacterium species belong to the Firmicutes and the Actinobacteria phylum, respectively. Lactobacilli are members of the lactic acid bacteria (LAB) group, a broadly defined family of microorganisms that ferment various hexoses into primarily lactic acid. Lactobacilli are typically low G + C gram-positive species which are phylogenetically diverse, with over 100 species documented to date. Bifidobacteria are heterofermentative, high G + C content bacteria with about 30 species of bifidobacteria described to date.

  15. Hydroponic cultivation of soybean for Bioregenerative Life Support Systems (BLSSs)

    Science.gov (United States)

    De Pascale, Stefania; De Micco, Veronica; Aronne, Giovanna; Paradiso, Roberta

    evaluate the adaptation of soybean plants to hydroponics under controlled environment, as well as the plant response to changing cultural parameters, in order to identify the best cultivation protocol for BLSSs. The optimisation of growth conditions in hydroponics has been pursued being aware that environmental factors acting at sub-optimal levels may also increase the sensitivity of plants to space factors. The influence of the following parameters on plant growth and yield was also studied: - the hydroponic system: sole liquid solution (Nutrient Film Technique, NFT) vs solid substrate (rockwool); - the source of nitrogen in the nutrient solution: nitrate fertilizers vs urea; - the root symbiosis with atmospheric nitrogen-fixing bacteria: absence or presence of Bradyrhizobium japonicum; - the influence of microbes in the rhizosphere: inoculation with a mix containing mycorrhizal and trichoderma species, and beneficial bacteria vs a non-inoculated control. All the treatments were evaluated in terms of agronomic traits (e.g. plant size and seed production), physiological traits (gas exchange, nutrient uptake), chemical composition of seeds and their products, and technical parameters such as resource use efficiency and non-edible biomass production (waste).

  16. Influence of natural substrates and co-occurring marine bacteria on the production of secondary metabolites by Photobacterium halotolerans

    DEFF Research Database (Denmark)

    Månsson, Maria; Giobergia, Sonia; Møller, Kirsten A.

    Genome sequences reveal that our current standard laboratory conditions only support a fraction of the potential secondary metabolism in bacteria. Thus, we must rethink cultivation, detection, and isolation strategies for bacterial secondary metabolites in order to explore the huge, so far unchar...... uncharacterized chemical potential of these organisms. We are currently investigating the use of natural substrates and co-cultures with commensal bacteria to elicit or alter production of antibacterial compounds in marine bacteria....

  17. Hybrid origins of cultivated potatoes.

    Science.gov (United States)

    Rodríguez, Flor; Ghislain, Marc; Clausen, Andrea M; Jansky, Shelley H; Spooner, David M

    2010-10-01

    Solanum section Petota is taxonomically difficult, partly because of interspecific hybridization at both the diploid and polyploid levels. The taxonomy of cultivated potatoes is particularly controversial. Using DNA sequence data of the waxy gene, we here infer relationships among the four species of cultivated potatoes accepted in the latest taxonomic treatment (S. ajanhuiri, S. curtilobum, S. juzepczukii and S. tuberosum, the latter divided into the Andigenum and Chilotanum Cultivar Groups). The data support prior ideas of hybrid origins of S. ajanhuiri from the S. tuberosum Andigenum Group (2x = S. stenotomum) × S. megistacrolobum; S. juzepczukii from the S. tuberosum Andigenum Group (2x = S. stenotomum) × S. acaule; and S. curtilobum from the S. tuberosum Andigenum Group (4x = S. tuberosum subsp. andigenum) × S. juzepczukii. For the tetraploid cultivar-groups of S. tuberosum, hybrid origins are suggested entirely within much more closely related species, except for two of three examined accessions of the S. tuberosum Chilotanum Group that appear to have hybridized with the wild species S. maglia. Hybrid origins of the crop/weed species S. sucrense are more difficult to support and S. vernei is not supported as a wild species progenitor of the S. tuberosum Andigenum Group.

  18. NETS FOR PEACH PROTECTED CULTIVATION

    Directory of Open Access Journals (Sweden)

    Evelia Schettini

    2012-06-01

    Full Text Available The aim of this paper was to investigate the radiometric properties of coloured nets used to protect a peach cultivation. The modifications of the solar spectral distribution, mainly in the R and FR wavelength band, influence plant photomorphogenesis by means of the phytochrome and cryptochrome. The phytochrome response is characterized in terms of radiation rate in the red wavelengths (R, 600-700 nm to that in the farred radiation (FR, 700-800 nm, i.e. the R/FR ratio. The effects of the blue radiation (B, 400-500 nm is investigated by the ratio between the blue radiation and the far-red radiation, i.e. the B/FR ratio. A BLUE net, a RED net, a YELLOW net, a PEARL net, a GREY net and a NEUTRAL net were tested in Bari (Italy, latitude 41° 05’ N. Peach trees were located in pots inside the greenhouses and in open field. The growth of the trees cultivated in open field was lower in comparison to the growth of the trees grown under the nets. The RED, PEARL, YELLOW and GREY nets increased the growth of the trees more than the other nets. The nets positively influenced the fruit characteristics, such as fruit weight and flesh firmness.

  19. O tecer e o trajar: metáforas do empoderamento feminino em dois contos de Marina Colasanti

    Directory of Open Access Journals (Sweden)

    Enedir Silva Santos

    2015-12-01

    Full Text Available Os contos de Marina Colasanti transitam entre o real e o fantástico alinhavando ações que conduzem as relações humanas e seus dilemas. Suas narrativas curtas são retiradas das experiências diárias para suscitar reflexões muito mais abrangentes, pois são entrelaçados de palavras e situações que desvelam o cotidiano e o comportamento exigido da mulher. A partir da análise dos contos “A moça tecelã”, do livro Doze reis e a moça no labirinto do vento (1982, e “Plano matrimonial”, de Contos do amor rasgado (1982, evidenciamos de que forma a autora constrói, metaforicamente, na tessitura narrativa a roupa masculina e o trabalho da tecelã para refletir acerca do empoderamento da mulher. Os contos têm em comum a relação heterossexual das protagonistas intermediada pelos trajes masculinos, que se revestem de simbologia e revelam, no contexto literário, a explanação do lugar social da mulher e do homem, visto como uma das linhas que alinhavam a vivência humana. Desse modo, Marina Colasanti tece na trama discursiva as redes de significações reveladoras do fazer e do ser feminino.

  20. Phylogeny of Heterokonta: Incisomonas marina, a uniciliate gliding opalozoan related to Solenicola (Nanomonadea), and evidence that Actinophryida evolved from raphidophytes.

    Science.gov (United States)

    Cavalier-Smith, Thomas; Scoble, Josephine Margaret

    2013-08-01

    Environmental rDNA sequencing has revealed many novel heterokont clades of unknown morphology. We describe a new marine heterotrophic heterokont flagellate, Incisomonas marina, which most unusually lacks an anterior cilium. It glides and swims with its cilium trailing behind, but is predominantly sedentary on the substratum, with or without a cilium. 18S rDNA sequence phylogeny groups Incisomonas strongly within clade MAST-3; with others it forms a robust sister clade to Solenicola, here grouped with it as new order Uniciliatida, placed within new class Nanomonadea encompassing MAST-3. Our comprehensive maximum likelihood heterokont phylogeny shows Nanomonadea as sister to MAST-12 plus Opalinata within Opalozoa, and that Actinophryida are not Opalozoa (previously suggested by distance trees), but highly modified raphidomonads, arguably related to Heliorapha (formerly Ciliophrys) azurina gen., comb. n. We discuss evolution of Actinophryida from photosynthetic raphidophytes. Clades MAST-4,6-11 form one early-branching bigyran clade. Olisthodiscus weakly groups with Hypogyristea not Raphidomonadea. Phylogenetic analysis shows that MAST-13 is all Bicosoeca. Some gliding uniciliates similar to Incisomonas marina seem to have been misclassified: therefore we establish Incisomonas devorata comb. n. for Rigidomastix devoratum, revise the genus Rigidomastix, transfer Clautriavia parva to Kiitoksia. We make 17 new familes (13 heterokont (three algal), two cercozoan, two amoebozoan).

  1. The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska

    Science.gov (United States)

    Talbot, Sandra; Sage, Kevin; Rearick, Jolene; Fowler, Megan C.; Muñiz-Salazar, Raquel; Baibak, Bethany; Wyllie-Echeverria, Sandy; Cabello-Pasini, Alehandro; Ward, David H.

    2016-01-01

    Eelgrass (Zostera marina) populations occupying coastal waters of Alaska are separated by a peninsula and island archipelago into two Large Marine Ecosystems (LMEs). From populations in both LMEs, we characterize genetic diversity, population structure, and polarity in gene flow using nuclear microsatellite fragment and chloroplast and nuclear sequence data. An inverse relationship between genetic diversity and latitude was observed (heterozygosity: R2 = 0.738, P < 0.001; allelic richness: R2 = 0.327, P = 0.047), as was significant genetic partitioning across most sampling sites (θ = 0.302, P < 0.0001). Variance in allele frequency was significantly partitioned by region only in cases when a population geographically in the Gulf of Alaska LME (Kinzarof Lagoon) was instead included with populations in the Eastern Bering Sea LME (θp = 0.128–0.172; P < 0.003), suggesting gene flow between the two LMEs in this region. Gene flow among locales was rarely symmetrical, with notable exceptions generally following net coastal ocean current direction. Genetic data failed to support recent proposals that multiple Zostera species (i.e. Z. japonica and Z. angustifolia) are codistributed with Z. marina in Alaska. Comparative analyses also failed to support the hypothesis that eelgrass populations in the North Atlantic derived from eelgrass retained in northeastern Pacific Last Glacial Maximum refugia. These data suggest northeastern Pacific populations are derived from populations expanding northward from temperate populations following climate amelioration at the terminus of the last Pleistocene glaciation.

  2. Survey of helminths, ectoparasites, and chytrid fungus of an introduced population of cane toads, Rhinella marina (Anura: Bufonidae), from Grenada

    Science.gov (United States)

    Drake, Michael C.; Zieger, Ulrike; Groszkowski, Andrew; Gallardo, Bruce; Sages, Patti; Reavis, Roslyn; Faircloth, Leslie; Jacobson, Krystin; Lonce, Nicholas; Pinckney, Rhonda D.; Cole, Rebecca Ann

    2014-01-01

    One hundred specimens of Rhinella marina, (Anura: Bufonidae) collected in St. George's parish, Grenada, from September 2010 to August 2011, were examined for the presence of ectoparasites and helminths. Ninety-five (95%) were parasitized by 1 or more parasite species. Nine species of parasites were found: 1 digenean, 2 acanthocephalans, 4 nematodes, 1 arthropod and 1 pentastome. The endoparasites represented 98.9% of the total number of parasite specimens collected. Grenada represents a new locality record for Mesocoelium monas, Raillietiella frenatus, Pseudoacanthacephalus sp., Aplectana sp., Physocephalus sp., Acanthacephala cystacanth, and Physalopteridae larvae. The digenean M. monas occurred with the highest prevalence of 82%, contrasting many studies of R. marina where nematodes dominate the parasite infracommunity. Female toads were found to have a significantly higher prevalence of Amblyomma dissimile than male toads. Only 2 parasites exhibited a significant difference between wet and dry season with Parapharyngodon grenadensis prevalence highest in the wet season and A. dissimile prevalence highest during the dry season. Additionally, A. dissimilewas significantly more abundant during the dry season.

  3. How honey kills bacteria

    NARCIS (Netherlands)

    P.H.S. Kwakman; A.A. te Velde; L. de Boer; D. Speijer; C.M.J.E. Vandenbroucke-Grauls; S.A.J. Zaat

    2010-01-01

    With the rise in prevalence of antibiotic-resistant bacteria, honey is increasingly valued for its antibacterial activity. To characterize all bactericidal factors in a medical-grade honey, we used a novel approach of successive neutralization of individual honey bactericidal factors. All bacteria t

  4. Metallization of bacteria cells

    Institute of Scientific and Technical Information of China (English)

    黎向锋; 李雅芹; 蔡军; 张德远

    2003-01-01

    Bacteria cells with different standard shapes are well suited for use as templates for the fabrication of magnetic and electrically conductive microstructures. In this paper, metallization of bacteria cells is demonstrated by an electroless deposition technique of nickel-phosphorus initiated by colloid palladium-tin catalyst on the surfaces of Citeromyces matritensis and Bacillus cereus. The activated and metallized bacteria cells have been characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM) and X-ray diffraction analysis (XRD). Results showed that both Citeromyces matritensis and Bacillus cereus had no deformation in shape after metallization; the metallized films deposited on the surfaces of bacteria cells are homogeneous in thickness and noncrystalline in phase structure. The kinetics of colloid palladium-tin solution and electroless plating on bacteria cells is discussed.

  5. Parental material and cultivation determine soil bacterial community structure and fertility.

    Science.gov (United States)

    Sun, Li; Gao, Jusheng; Huang, Ting; Kendall, Joshua R A; Shen, Qirong; Zhang, Ruifu

    2015-01-01

    Microbes are the key components of the soil environment, playing important roles during soil development. Soil parent material provides the foundation elements that comprise the basic nutritional environment for the development of microbial community. After 30 years artificial maturation of cultivation, the soil developments of three different parental materials were evaluated and bacterial community compositions were investigated using the high-throughput sequencing approach. Thirty years of cultivation increased the soil fertility and soil microbial biomass, richness and diversity, greatly changed the soil bacterial communities, the proportion of phylum Actinobacteria decreased significantly, while the relative abundances of the phyla Acidobacteria, Chloroflexi, Gemmatimonadetes, Armatimonadetes and Nitrospira were significantly increased. Soil bacterial communities of parental materials were separated with the cultivated ones, and comparisons of different soil types, granite soil and quaternary red clay soil were similar and different with purple sandy shale soil in both parental materials and cultivated treatments. Bacterial community variations in the three soil types were affected by different factors, and their alteration patterns in the soil development also varied with soil type. Soil properties (except total potassium) had a significant effect on the soil bacterial communities in all three soil types and a close relationship with abundant bacterial phyla. The amounts of nitrogen-fixing bacteria as well as the abundances of the nifH gene in all cultivated soils were higher than those in the parental materials; Burkholderia and Rhizobacte were enriched significantly with long-term cultivation. The results suggested that crop system would not deplete the nutrients of soil parental materials in early stage of soil maturation, instead it increased soil fertility and changed bacterial community, specially enriched the nitrogen-fixing bacteria to accumulate

  6. Comparison of Cultivable Acetic Acid Bacterial Microbiota in Organic and Conventional Apple Cider Vinegar

    OpenAIRE

    2016-01-01

    Organic apple cider vinegar is produced from apples that go through very restricted treatment in orchard. During the first stage of the process, the sugars from apples are fermented by yeasts to cider. The produced ethanol is used as a substrate by acetic acid bacteria in a second separated bioprocess. In both, the organic and conventional apple cider vinegars the ethanol oxidation to acetic acid is initiated by native microbiota that survived alcohol fermentation. We compared the cultivable ...

  7. MAPPING INTERTIDAL EELGRASS (ZOSTERA MARINA L.) IN THREE COASTAL ESTUARIES OF THE PACIFIC NORTHWEST USA USING FALSE-COLOUR NEAR-INFRARED AERIAL PHOTOGRAPHY

    Science.gov (United States)

    This study describes a hybrid technique of digitally classifying aerial photography used for mapping the intertidal habitat of eelgrass (Zostera marina L.) in Pacific Northwest USA estuaries. The large tidal range (2-3 m) in this region exposes most of this seagrass community at ...

  8. New evidence for habitat-specific selection in Wadden Sea Zostera marina populations revealed by genome scanning using SNP and microsatellite markers

    NARCIS (Netherlands)

    Oetjen, Katharina; Ferber, Steven; Dankert, Ilka; Reusch, Thorsten B. H.

    2010-01-01

    Eelgrass Zostera marina is an ecosystem-engineering species of outstanding importance for coastal soft sediment habitats that lives in widely diverging habitats. Our first goal was to detect divergent selection and habitat adaptation at the molecular genetic level; hence, we compared three pairs of

  9. Quest for minor but key chlorophyll molecules in photosynthetic reaction centers - unusual pigment composition in the reaction centers of the chlorophyll d-dominated cyanobacterium Acaryochloris marina.

    Science.gov (United States)

    Akiyama, Machiko; Miyashita, Hideaki; Kise, Hideo; Watanabe, Tadashi; Mimuro, Mamoru; Miyachi, Shigetoh; Kobayashi, Masami

    2002-01-01

    A short overview, based on our own findings, is given of the minor pigments that function as key components in photosynthesis. Recently, we found the presence of chlorophyll a, chlorophyll d' and pheophytin a as minor pigments in the chlorophyll d-dominated cyanobacterium Acaryochloris marina.

  10. Free and Bound Fatty-Acids and Hydroxy Fatty-Acids in the Living and Decomposing Eelgrass Zostera-Marina L

    NARCIS (Netherlands)

    De Leeuw, J.; Rijpstra, W.I.C.; Nienhuis, P.H.

    1995-01-01

    Very early diagenetic processes of free, esterified and amide or glycosidically bound fatty acids and hydroxy fatty acids present in well documented samples of living and decomposing eelgrass (Zostera marina L.) were investigated. Free and esterified fatty acids decreased significantly over a period

  11. Comparison of non-indigenous dwarf eelgrass (Zostera japonica) and native eelgrass (Z. marina) distributions in a northeast Pacific estuary: 1997-2014

    Science.gov (United States)

    This study addressed the following question: In a coastal estuary of the northeastern Pacific Ocean with a relatively large areal extent of the native eelgrass Zostera marina, is an expanding distribution of the non-indigenous dwarf eelgrass Z. japonica accompanied by a measurab...

  12. DESICCATION IS A LIMITING FACTOR FOR EELGRASS (ZOSTERA MARINA L.) DISTRIBUTION IN THE INTERTIDAL ZONE OF A NORTHEASTERN P{ACIFIC (USA) ESTUARY

    Science.gov (United States)

    Intertidal irradiance, temperature, and aerial exposure were measured for two years in intertidal Zostera marina beds located in Yaquina Bay (Newport, OR, USA). These physical data were correlated with plant growth and other metrics measured at intervals during the study. Pho...

  13. Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA

    Energy Technology Data Exchange (ETDEWEB)

    Thom, Ronald M.; Southard, Susan L.; Borde, Amy B.

    2014-11-01

    Using laboratory experiments on temperature and leaf metabolism, and field data sets from Washington, between 1991 and 2013, we developed lines of evidence showing that variations in water temperature, mean sea level, and desiccation stress appear to drive spatial and temporal variations in eelgrass (Zostera marina).

  14. Diversity and phylogeny of the ectoine biosynthesis genes in aerobic, moderately halophilic methylotrophic bacteria.

    Science.gov (United States)

    Reshetnikov, Alexander S; Khmelenina, Valentina N; Mustakhimov, Ildar I; Kalyuzhnaya, Marina; Lidstrom, Mary; Trotsenko, Yuri A

    2011-11-01

    The genes of ectoine biosynthesis pathway were identified in six species of aerobic, slightly halophilic bacteria utilizing methane, methanol or methylamine. Two types of ectoine gene cluster organization were revealed in the methylotrophs. The gene cluster ectABC coding for diaminobutyric acid (DABA) acetyltransferase (EctA), DABA aminotransferase (EctB) and ectoine synthase (EctC) was found in methanotrophs Methylobacter marinus 7C and Methylomicrobium kenyense AMO1(T). In methanotroph Methylomicrobium alcaliphilum ML1, methanol-utilizers Methylophaga thalassica 33146(T) , Methylophaga alcalica M8 and methylamine-utilizer Methylarcula marina h1(T), the genes forming the ectABC-ask operon are preceded by ectR, encoding a putative transcriptional regulatory protein EctR. Phylogenetic relationships of the Ect proteins do not correlate with phylogenetic affiliation of the strains, thus implying that the ability of methylotrophs to produce ectoine is most likely the result of a horizontal transfer event.

  15. Diversity and phosphate solubilization by bacteria isolated from Laki Island coastal ecosystem

    OpenAIRE

    SRI WIDAWATI

    2011-01-01

    Widawati S (2011) Diversity and phosphate solubilization by bacteria isolated from Laki Island coastal ecosystem. Biodiversitas 12: 17-21. Soil, water, sand, and plant rhizosphere samples collected from coastal ecosystem of Laki Island-Jakarta were screened for phosphate solubilizing bacteria (PSB). While the population was dependent on the cultivation media and the sample type, the highest bacterial population was observed in the rhizosphere of Ipomea aquatica. The PSB strains isolated from ...

  16. Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells.

    Science.gov (United States)

    Dorantes-Aranda, Juan José; Nichols, Peter D; David Waite, Trevor; Hallegraeff, Gustaaf M

    2013-04-01

    Lipid profiles of three strains (Mexico, Australia, Japan) of Chattonella marina (Subrahmanyan) Hara et Chihara were studied under defined growth (phosphate, light, and growth phase) and harvest (intact and ruptured cells) conditions. Triacylglycerol levels were always 51% of total lipids). The major fatty acids in C. marina were palmitic (16:0), eicosapentaenoic (EPA, 20:5ω3), octadecatetraenoic (18:4ω3), myristic (14:0), and palmitoleic (16:1ω7c) acids. Higher levels of EPA were found in ruptured cells (21.4-29.4%) compared to intact cells (8.5-25.3%). In general, Japanese N-118 C. marina was the highest producer of EPA (14.3-29.4%), and Mexican CMCV-1 the lowest producer (7.9-27.1%). Algal cultures, free fatty acids from C. marina, and the two aldehydes 2E,4E-decadienal and 2E,4E-heptadienal (suspected fatty acid-derived products) were tested against the rainbow trout fish gill cell line RTgill-W1. The configuration of fatty acids plays an important role in ichthyotoxicity. Free fatty acid fractions, obtained by base saponification of total lipids from C. marina showed a potent toxicity toward gill cells (median lethal concentration, LC50 (at 1 h) of 0.44 μg · mL(-1) in light conditions, with a complete loss of viability at >3.2 μg · mL(-1) ). Live cultures of Mexican C. marina were less toxic than Japanese and Australian strains. This difference could be related to differing EPA content, superoxide anion production, and cell fragility. The aldehydes 2E,4E-decadienal and 2E,4E-heptadienal also showed high impact on gill cell viability, with LC50 (at 1 h) of 0.34 and 0.36 μg · mL(-1) , respectively. Superoxide anion production was highest in Australian strain CMPL01, followed by Japanese N-118 and Mexican CMCV-1 strains. Ruptured cells showed higher production of superoxide anion compared to intact cells (e.g., 19 vs. 9.5 pmol · cell(-1)  · hr(-1) for CMPL01, respectively). Our results indicate that C. marina is more ichthyotoxic

  17. Analysis on pathogenic bacteria cultivation and medicine sensitivity in 530 cases of child impetigo infected in Tangxia area in Gongguan city%东莞塘厦地区530例儿童脓疱疮病原菌培养及药敏分析

    Institute of Scientific and Technical Information of China (English)

    杨凤娥; 谢国烈; 满洁; 陈伟俊; 陈艳清

    2012-01-01

    Objective To understand the pathogenic bacteria distribution and drug sensitivity in children infected with impetigo in Tangxia area of Gongguan city.Method The pustular liquid of 530 cases was taken for bacterial culture,and the drug resistance was analyzed in 528 separated strains.Results The pathogenic bacteria had staphylococcus aureus 504 strains (95.09%),the hemolytic streptococcus 14 strains (2.64%),the bowel coccus 3 strains (0.56%),the Pan-resistant acinetobacter baumannii 2 strains (0.38%),the Klebsiella pneumonia 2 strains (0.38%),the staphylococcus epidermidis 1 strain (0.18%),the proteus mirabilis 2 strains (0.38%).The test results of drug sensitive of 504 strains of staphylococcus aureus showed the drug resistance of staphyloccus aureus to penicillin,erythromycin and clindamycin was higher,which were 96.8%,89.1% and 53.5% respectively,those of other antibiotics were low.Other resistant pathogens were not high.Conclusion In Tangxia area of Gongguan city,the main pathogenic bacteria of children infected with impetigo is staphylococcus aureus,which has higher drug resistance to penicillin,erythromycin and clindamycin,it is already not suitable in this region in the treatment for impetigo caused by staphylococcus aureus infection.%目的 了解东莞塘厦地区儿童脓疱疮的病原菌分布及药物敏感性结果.方法 对530例脓疱疮患儿的脓疱液做细菌培养,并对分离出的528株病原菌进行耐药性分析.结果 分离出金黄色葡萄球菌504株(95.09%)、A群溶血性链球菌14株(2.64%)、肠球菌3株(0.56%)、鲍曼不动杆菌2株(0.38%)、肺炎克雷白杆菌2株(0.38%)、奇异变形杆菌2株(0.38%)、表皮葡萄球菌1株(0.18%).对504株金黄色葡萄球菌进行药敏试验结果显示,金黄色葡萄球菌对青霉素、红霉素、克林霉素耐药率较高,分别为96.8%、89.1%、53.5%,对其他抗生素耐药率较低.其他病原菌耐药率都不高.结论 东莞

  18. Modern, sustainable, protected greenhouse cultivation in Algeria

    NARCIS (Netherlands)

    Os, van E.A.; Speetjens, S.L.; Ruijs, M.N.A.; Bruins, M.A.; Sapounas, A.

    2012-01-01

    The goal of the project was to analyse the structure and technology level of protected cultivation in Algeria, which were followed by recommendations for improvements (technical, cultivation and economic aspects) of existing and newly built greenhouses. Further, in discussion with Dutch and Algerian

  19. My Understanding on Cultivation of Autonomous Learning

    Institute of Scientific and Technical Information of China (English)

    张金玉

    2007-01-01

    Autonomous learning has been popular in western education system for some time, this article aims to analyze the connotation and the necessity of cultivating learner autonomy, and then offer some strategies about the cultivation of learner autonomy from a chinese perspective.

  20. Biogeografía marina de Chile continental Marine biogeography of continental Chile

    Directory of Open Access Journals (Sweden)

    PATRICIO A. CAMUS

    2001-09-01

    Full Text Available Por casi un siglo, varios autores han analizado los patrones de distribución de la fauna y flora marina del Pacífico de Sudamérica y de la costa de Chile en particular, con el propósito de establecer el número de las unidades biogeográficas presentes. Si bien los patrones generales actuales son relativamente bien conocidos, la mayoría de los estudios se ha enfocado en las discontinuidades distribucionales y en propuestas de clasificación más que en los factores y procesos dinámicos que han formado las unidades espaciales identificadas. Aun en el caso de las clasificaciones, las conclusiones publicadas se basan principalmente en el análisis de uno o pocos grupos seleccionados, y presentan diferencias importantes en los criterios de selección de los grupos, el número de especies involucrado y la metodología usada. Por otra parte, las discrepancias entre estudios específicos tienden a obscurecer un fenómeno relevante y de mayor escala como es la dinámica de las biotas, uno de los aspectos biogeográficos menos conocidos en Chile. En tal contexto, este trabajo presenta una revisión de literatura sobre la biogeografía marina de Chile y sus aspectos asociados, con los siguientes objetivos: (a resumir las características oceanográficas, climáticas y geomorfológicas de la costa continental de Chile; (b discutir 27 clasificaciones biogeográficas publicadas para la costa chilena, analizando los criterios y procedimientos usados por los autores, sus conclusiones principales, y la concordancia entre los estudios; (c evaluar los procesos dispersivos y vicariantes asociados a los desplazamientos y modificaciones de las biotas de la región, en función de los antecedentes disponibles sobre las condiciones existentes y los principales eventos ocurridos durante los períodos Terciario y Cuaternario; y (d proponer un escenario de cambio biogeográfico basado en determinantes históricas y su influencia en la formación, carácter y din

  1. Antibiotics from predatory bacteria

    Directory of Open Access Journals (Sweden)

    Juliane Korp

    2016-03-01

    Full Text Available Bacteria, which prey on other microorganisms, are commonly found in the environment. While some of these organisms act as solitary hunters, others band together in large consortia before they attack their prey. Anecdotal reports suggest that bacteria practicing such a wolfpack strategy utilize antibiotics as predatory weapons. Consistent with this hypothesis, genome sequencing revealed that these micropredators possess impressive capacities for natural product biosynthesis. Here, we will present the results from recent chemical investigations of this bacterial group, compare the biosynthetic potential with that of non-predatory bacteria and discuss the link between predation and secondary metabolism.

  2. 海洋尖尾藻培养液的基本特征%Basic Features of the Culture Medium of Oxyrrhis marina

    Institute of Scientific and Technical Information of China (English)

    安鑫龙; 李雪梅; 李亚宁

    2012-01-01

    [目的]研究海洋尖尾藻培养液的基本特征.[方法]以亚心形扁藻(Platymoras subcordiformis)和米氏凯伦藻(Karernia mikimotoi)作为海洋尖尾藻(Oxyrrhis marina)的饵料进行室内静置培养.[结果]海洋尖尾藻静王培养过程中培养液颜色发生变化,先由饵料藻培养液的颜色变为淡粉红色至粉红色,最终变为无色.海洋尖尾藻培养过程中瓶底首先出现少量沉淀物,随着培养时间延长,沉淀物上附着的饵料藻开始逐渐增多然后慢慢减少直至消失.[结论]该研究获得了海洋尖尾藻培养液的基本牲征,为海洋尖尾藻生态学研究提供了参考.%[ Objective ] To study the basic features of the culture medium of Oxyrrhis marina. [ Method ] The Oxyrrhis marina was indoor cultured with the baits of Platymonas subcordiformis and Karenia mikimotoi. [Result] During the static culture process, the color of the culture medium of Oxyrrhis marina changed firstly from light pink to pink and finally to colorless. Some precipitate appeared at the bottle bottom, with the extending culture time, the bait algae attached to the precipitate gradually increased, then decreased and finally disappeared. [ Conclusion] The study provides references for the screening of the culture medium of Oxyrrhis marina and realizes its long-term culture.

  3. Probing control of fed-batch cultivations: analysis and tuning

    DEFF Research Database (Denmark)

    Åkesson, Mats Fredrik; Hagander, P.; Axelsson, J.P.

    2001-01-01

    Production of various proteins can today be made using genetically modified Escherichia coli bacteria. In cultivations of E. coli it is important to avoid accumulation of the by- product acetate. Formation of acetate occurs when the specific glucose uptake exceeds a critical value and can...... be avoided by a proper feeding strategy. A difficulty is that the critical glucose uptake often is poorly known and even time varying. We here analyze an approach for control of glucose feeding that enables feeding at the critical glucose uptake without prior information. The key idea is to superimpose...... a probing signal to the feed rate in order to obtain information used to determine if the feed rate should be increased or decreased. The main contribution of this paper is to derive guidelines for tuning of the probing controller. A sufficient condition for stability is presented. By introducing...

  4. Microalgal cultivation and utilization in sustainable energy production

    Energy Technology Data Exchange (ETDEWEB)

    Lakaniemi, A.-M.

    2012-07-01

    Microalgae are a promising feedstock for biofuel and bioenergy production due to their high photosynthetic efficiencies, high growth rates and no need for external organic carbon supply. However, microalgal biomass cultivation for energy production purposes is still rare in commercial scale. Further research and development is needed to make microalgal derived energy sustainable and economically competitive. This work investigated cultivation of fresh water microalga Chlorella vulgaris and marine microalga Dunaliella tertiolecta and their utilization in production of hydrogen, methane, electricity, butanol and bio-oil after bulk harvesting the biomass. Growth of the two microalgae was studied in five different photobioreactor (PBR) configurations especially concentrating on the quantification and characterization of heterotrophic bacteria in non-axenic microalgal cultivations and microalgal utilization of different nitrogen sources. Anaerobic cultures used for the energy conversion processes were enriched from a mesophilic municipal sewage digester separately for production of H{sub 2}, CH{sub 4} and electricity from the two microalgal species. After culture enrichment, energy conversion yields of microalgal biomass to the different energy carriers were compared. In summary, this study demonstrated that both C. vulgaris and D. tertiolecta can be used for production of Hv(2), CHv(4), electricity, butanol and lipids. Based on this study C. vulgaris is more suitable for bioenergy production than D. tertiolecta. Depending on cellular lipid content, lipid utilization for bio-oil production and anaerobic digestion were the most potent means of converting C. vulgaris biomass to energy. The study also revealed diverse microbial communities in non-axenic microalgal photobioreactor cultures and in anaerobic consortia converting microalgal biomass to energy carriers

  5. Bacterial community analysis of Tatsoi cultivated by hydroponics.

    Science.gov (United States)

    Koo, Ok K; Kim, Hun; Kim, Hyun J; Baker, Christopher A; Ricke, Steven C

    2016-07-02

    Tatsoi (Brassica narinosa) is a popular Asian salad green that is mostly consumed as a source of fresh produce. The purpose of this study was to assess the microbial diversity of Tatsoi cultivated in a hydroponic system and of its ecosystem. Tatsoi leaves, nutrient solution, and perlite/earth samples from a trickle feed system (TFS) and an ebb-and-flow system (EFS) were collected and their microbial communities were analyzed by pyrosequencing analysis. The results showed that most bacteria in the leaves from the TFS contained genus Sporosarcina (99.6%), while Rhizobium (60.4%) was dominant in the leaves from the EFS. Genus Paucibacter (18.21%) and Pelomonas (12.37%) were the most abundant microbiota in the nutrient solution samples of the TFS. In the EFS, the nutrient solution samples contained mostly genus Rhodococcus and Acinetobacter. Potential microbial transfer between the leaves and the ecosystem was observed in the EFS, while samples in the TFS were found to share only one species between the leaves, nutrient solution, and earth. Together, these results show that the bacterial populations in Tatsoi and in its ecosystem are highly diverse based on the cultivation system.

  6. Microalgal Cultivation in Secondary Effluent: Recent Developments and Future Work

    Directory of Open Access Journals (Sweden)

    Junping Lv

    2017-01-01

    Full Text Available Eutrophication of water catchments and the greenhouse effect are major challenges in developing the global economy in the near future. Secondary effluents, containing high amounts of nitrogen and phosphorus, need further treatment before being discharged into receiving water bodies. At the same time, new environmentally friendly energy sources need to be developed. Integrating microalgal cultivation for the production of biodiesel feedstock with the treatment of secondary effluent is one way of addressing both issues. This article provides a comprehensive review of the latest progress in microalgal cultivation in secondary effluent to remove pollutants and accumulate lipids. Researchers have discovered that microalgae remove nitrogen and phosphorus effectively from secondary effluent, accumulating biomass and lipids in the process. Immobilization of appropriate microalgae, and establishing a consortium of microalgae and/or bacteria, were both found to be feasible ways to enhance pollutant removal and lipid production. Demonstrations of pilot-scale microalgal cultures in secondary effluent have also taken place. However there is still much work to be done in improving pollutants removal, biomass production, and lipid accumulation in secondary effluent. This includes screening microalgae, constructing the consortium, making use of flue gas and nitrogen, developing technologies related to microalgal harvesting, and using lipid-extracted algal residues (LEA.

  7. [Darwin and bacteria].

    Science.gov (United States)

    Ledermann D, Walter

    2009-02-01

    As in 2009 the scientific world celebrates two hundreds years from the birthday of Charles Darwin and one hundred and fifty from the publication of The Origin of Species, an analysis of his complete work is performed, looking for any mention of bacteria. But it seems that the great naturahst never took knowledge about its existence, something rather improbable in a time when the discovery of bacteria shook the medical world, or he deliberately ignored them, not finding a place for such microscopic beings into his theory of evolution. But the bacteria badly affected his familiar life, killing scarlet fever one of his children and worsening to death the evolution of tuberculosis of his favourite Annie. Darwin himself could suffer the sickness of Chagas, whose etiological agent has a similar level to bacteria in the scale of evolution.

  8. Rezension von: Karl Lenz, Marina Adler: Geschlechterverhältnisse. Einführung in die sozialwissenschaftliche Geschlechterforschung Band 1. Weinheim u.a.: Juventa Verlag 2010. — Karl Lenz, Marina Adler: Geschlechterbeziehungen. Weinheim u.a.: Juventa Verlag 2011.

    Directory of Open Access Journals (Sweden)

    Heike Kahlert

    2012-03-01

    Full Text Available Karl Lenz und Marina Adler orientieren sich in ihrem zweibändigen Lehrbuch zur sozialwissenschaftlichen Geschlechterforschung an der etablierten Unterscheidung zwischen Makro- und Mikrosoziologie. Im ersten Band werden theoretische Perspektiven der Geschlechterforschung und unterschiedliche Zusammenhänge zu Kultur nachgezeichnet sowie zentrale Themenfelder einer Sozialstrukturanalyse der Geschlechterordnung fokussiert, nämlich Recht, Politik, Bildung und Arbeit. Im zweiten Band stehen neben der Sozialisation ausgewählte Erträge der mikrosoziologischen Geschlechterforschung im Zentrum, nämlich Körper, Sexualität, persönliche Beziehungen, Devianz und Gewalt. In dieser überfälligen, informativen, sorgfältig recherchierten, aber auch vergleichsweise traditionellen und empirisch orientierten Einführung wird die Geschlechterforschung zwar in einer breiteren Diversity-Forschung verortet, das Verhältnis von Diversität und Geschlecht leider aber nicht reflektiert.

  9. Innovación docente en las asignaturas de Biología Marina y Zoología Marina: aprendizaje basado en problemas y trabajo en pequeños grupos

    OpenAIRE

    Guerra García, José Manuel; Corzo Toscano, Juan; Espinosa Torre, Free; García Gómez, José Carlos

    2012-01-01

    El inicio del grado de Biología en la Universidad de Sevilla modifica sustancialmente la organización de los estudios universitarios, pasando de licenciatura de 5 años a grado de 4 años. Ello supone la desaparición de la asignatura optativa “Biología Marina” y la de libre configuración “Zoología Marina”. Por tanto, el futuro del mantenimiento de la línea docente en Biología Marina en la Universidad de Sevilla dependerá del desarrollo de un máster. De este modo, en la asignat...

  10. Cultivation-dependent analysis of the microbial diversity associated with the seagrass meadows in Xincun Bay, South China Sea.

    Science.gov (United States)

    Jiang, Yu-Feng; Ling, Juan; Wang, You-Shao; Chen, Biao; Zhang, Yan-Ying; Dong, Jun-De

    2015-10-01

    Microbial communities have largely existed in the seagrass meadows. A total of 496 strains of the bacteria in the seagrass meadows, which belonged to 50 genera, were obtained by the plate cultivation method from three sites of Xincun Bay, South China Sea. The results showed that Bacillales and Vibrionales accounted for the highest proportions of organisms in all communities. The diversity of the bacteria in the sediment was higher than that associated with seagrass. Thalassia hemperichii possessed the highest abundance of bacteria, followed by Enhalus acoroides and Cymodocea rotundata. Robust seasonal dynamics in microbial community composition were also observed. It was found that microbial activities were closely tied to the growth stage of the seagrass. The microbial distribution was the lowest in site 3. The abundance of the bacteria was linked to the interactions between bacteria and plants, the condition of plant and even the coastal water quality and the nutrition level in the sediment.

  11. Lipopolysaccharides in diazotrophic bacteria.

    Science.gov (United States)

    Serrato, Rodrigo V

    2014-01-01

    Biological nitrogen fixation (BNF) is a process in which the atmospheric nitrogen (N2) is transformed into ammonia (NH3) by a select group of nitrogen-fixing organisms, or diazotrophic bacteria. In order to furnish the biologically useful nitrogen to plants, these bacteria must be in constant molecular communication with their host plants. Some of these molecular plant-microbe interactions are very specific, resulting in a symbiotic relationship between the diazotroph and the host. Others are found between associative diazotrophs and plants, resulting in plant infection and colonization of internal tissues. Independent of the type of ecological interaction, glycans, and glycoconjugates produced by these bacteria play an important role in the molecular communication prior and during colonization. Even though exopolysaccharides (EPS) and lipochitooligosaccharides (LCO) produced by diazotrophic bacteria and released onto the environment have their importance in the microbe-plant interaction, it is the lipopolysaccharides (LPS), anchored on the external membrane of these bacteria, that mediates the direct contact of the diazotroph with the host cells. These molecules are extremely variable among the several species of nitrogen fixing-bacteria, and there are evidences of the mechanisms of infection being closely related to their structure.

  12. Lipopolysaccharides in diazotrophic bacteria

    Directory of Open Access Journals (Sweden)

    Rodrigo Vassoler Serrato

    2014-09-01

    Full Text Available Biological nitrogen fixation is a process in which the atmospheric nitrogen (N2 is transformed into ammonia (NH3 by a select group of nitrogen-fixing organisms, or diazotrophic bacteria. In order to furnish the biologically useful nitrogen to plants, these bacteria must be in constant molecular communication with their host plants. Some of these molecular plant-microbe interactions are very specific, resulting in a symbiotic relationship between the diazotroph and the host. Others are found between associative diazotrophs and plants, resulting in plant infection and colonization of internal tissues. Independent of the type of ecological interaction, glycans and glycoconjugates produced by these bacteria play an important role in the molecular communication prior and during colonization. Even though exopolysaccharides (EPS and lipochitooligosaccharides (LCO produced by diazotrophic bacteria and released onto the environment have their importance in the microbe-plant interaction, it is the lipopolysaccharides (LPS, anchored on the external membrane of these bacteria, that mediates the direct contact of the diazotroph with the host cells. These molecules are extremely variable among the several species of nitrogen fixing-bacteria, and there are evidences of the mechanisms of infection being closely related to their structure.

  13. Antimicrobial and antifouling activities achieved by extracts of seaweeds from Gulf of California, Mexico Actividades antimicrobiana y anti-incrustante obtenidas de los extractos de algas marinas del Golfo de California, México

    Directory of Open Access Journals (Sweden)

    Ruth Noemí Águila-Ramírez

    2012-04-01

    Full Text Available Six species of common seaweed extracts were tested in laboratory assays: Dictyota flabellata, Padina concrescens, Laurencia johnstonii, Gymnogongrus martinensis, Ulva lactuca and Codium fragile for potential industrial applications through evaluation of the antibacterial activity against pathogenic bacteria (5 strains and the antifouling potency against the growth of key species of marine colonisers (7 bacteria, 5 fungi and 11 microalgae. The organic extract of L. johnstonii, U. lactuca and D. flabellata have bacterial antibiosis. The ethereal extracts were more active in comparison with buthanol extracts against the bacterial strain Staphylococcus aureus. The best antifouling results were obtained with U. lactuca and L. johnstonii(0.1-1 μg ml-1 against all strains tested. C.fragile exhibited significant antifouling activity with minimum inhibitory concentration (MIC between 1-10 μg ml-1 against marine microalgae Rhodosorus magnei, Neorhodella cyanea and Prymnesium calathiferum.Se analizaron seis especies de macroalgas comunes del Golfo de California: Dictyota flabellata, Padina concrescens, Laurencia johnstonii, Gymnogongrus martinensis, Ulva lactuca y Codium fragile para determinar su potencial aplicación industrial, a través de la evaluación de la actividad antibacteriana frente a bacterias patógenas (5 cepas, y el potencial anti-incrustante como inhibidores de crecimiento de especies colonizadoras en ambientes marinos (7 bacterias, 5 hongos y 11 microalgas. Los extractos orgánicos de L. johnstonii, U. lactuca y D. flabellata presentaron antibiosis bacteriana. Los extractos etéreos fueron más activos en comparación con los extractos de butanol frente a la cepa bacteriana Staphylococcus aureus. Los mejores resultados de actividad anti-incrustante se obtuvieron con U. lactuca y L. johnstonii (0.1-1 μg ml-1 frente a todas las cepas probadas. C. fragile mostró una significativa actividad anti-incrustante, presentando una concentraci

  14. ANÁLISIS ESPECTRAL DE OLAS MARINAS: MODELOS UNIVARIADOS // SPECTRAL ANALYSIS OF WAVE SEA: UNIVARIATE MODELS

    Directory of Open Access Journals (Sweden)

    Nestor Escudero Mora

    2015-12-01

    Full Text Available El análisis espectral, es el proceso técnico de la descomposición de una señal compleja en partes más simples. Muchos procesos físicos se describen mejor como una suma de muchas componentes de frecuencias individuales, alternativamente una señal puede dividirse en segmentos cortos y el análisis del espectro puede aplicarse a estos segmentos individuales. Desde el punto de vista del estudio de olas marinas, el espectro juega un rol fundamental y es interpretado como la energía presente en la serie de tiempo durante el periodo. Este estudio se basa en el análisis del espectro asociado a datos del mar del Norte en el ano de 1999 en la plataforma North Alwyn almacenados en la Universidad Heriot-Watt de Edimburgo, separados en periodos de 20 minutos, el total a estudiar son 244 periodos. Para ello, se determinó que existe información que no aporta al problema, representa ruido y es el 3% de la energía, la cual no fue tomada para el estudio. Se dividió el espectro en 12 subintervalos y se ajustaron modelos autorregresivos bajo el esquema de Box-Jenskin and Reinsel, estudiados estos hasta encontrar la mejor aproximación posible para cada subintervalo mediante las propiedades estadísticas obtenidas por cada modelo, junto con los pronósticos respectivos. // ABSTRACT: Spectral analysis is the technical process of a complex signal decomposition into simpler parts. Many physical processes are better described as a sum of many individual frequency components; alternatively a signal can be divided into short segments and the spectrum analysis can be applied to these individual segments. From the point of view of the study of Waves Sea, the spectrum plays a vital role and it is interpreted as the energy in the time series during the period. This study is based on analysis of the spectrum associated to data from the North Sea in the year of 1999, taken in North Alwyn platform, stored in the Heriot-Watt University in Edinburgh, separated in

  15. [Stimulating effect of triphenylmethane series dyes on growth of Escherichia coli bacteria].

    Science.gov (United States)

    Bagramian, K A; Panosian, G A; Trchunian, A A

    1998-01-01

    The stimulating effect of a dye of the triphenylmethane group (fast green) applied at low concentrations (10(-4)%) in the presence of toluene on the specific growth rate of bacteria was found. The cell size did not change during batch cultivation. However, the cell dry weight and zeta-potential increased sharply.

  16. Sulfate-reducing bacteria and their activities in cyanobacterial mats of Solar Lake (Sinai, Egypt)

    DEFF Research Database (Denmark)

    Teske, A.; Ramsing, NB; Habicht, K.

    1998-01-01

    The sulfate-reducing bacteria within the surface layer of the hypersaline cyanobacterial mat of Solar Lake (Sinai, Egypt) were investigated with combined microbiological, molecular, and biogeochemical approaches. The diurnally oxic surface layer contained between 10(6) and 10(7) cultivable sulfat...

  17. Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

    DEFF Research Database (Denmark)

    Breum Andersen, Sandra; Yek, Sze Huei; Nash, David R.;

    2015-01-01

    Background: The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend gardens...

  18. Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

    DEFF Research Database (Denmark)

    Breum Andersen, Sandra; Yek, Sze Huei; Nash, David R.;

    2015-01-01

    Background: The obligate mutualism between fungus-growing ants and microbial symbionts offers excellent opportunities to study the specificity and stability of multi-species interactions. In addition to cultivating fungus gardens, these ants have domesticated actinomycete bacteria to defend garde...

  19. High mortality of Zostera marina under high temperature regimes but minor effects of the invasive macroalgae Gracilaria vermiculophylla

    DEFF Research Database (Denmark)

    Höffle, Hannes; Thomsen, M.S.; Holmer, M.

    2011-01-01

    The present study tested for density-dependent effects of the invasive drift macroalgae Gracilaria vermiculophylla (Ohmi) Papenfuss on growth and survival of the native eelgrass, Zostera marina L., under different temperature levels. Three weeks laboratory experiments were conducted in Odense......, Denmark, combining three algae densities (control, low 1.9 kg WW m2, high 4.5 kg WW m2) with typical Danish summer temperatures (18 C) and elevated temperatures (21 C and 27 C). There was a significant effect of temperature on shoot survival with on average 68% mortality in the high temperature treatment...... but almost no mortality at the two lower temperatures. The higher mortality was probably caused by high sulphide levels in the sediment pore water (0.6 mmol l1 at 18 C compared to 3.7 mmol l1 at 27 C). Above-ground growth of the surviving shoots was also significantly affected by temperature, with leaf...

  20. Preservar, demolir, construir ou ocupar a creche Ninho Jardim Condessa Marina R. Crespi: de todos os riscos, o risco

    Directory of Open Access Journals (Sweden)

    Verônica Sales Pereira

    2016-04-01

    Full Text Available Resumo Este artigo aborda a interrelação entre o patrimônio cultural industrial e o território urbano através dos processos de patrimonialização e de ocupação pela população sem-teto da creche Ninho Jardim Condessa Marina R. Crespi, no bairro da Mooca, em São Paulo. Analisaremos esses processos à luz da problematização das noções de risco, perda, demolição e mercado desenvolvidas por J. R. Gonçalves, entendendo-as como o avesso do patrimônio cultural, bem como de sua vinculação aos processos de gentrificação urbana. Para este fim, baseamo-nos na análise de documentos e na realização de entrevistas qualitativas.

  1. EL IMPACTO DE LA AGRICULTURA INTENSIVA EN EL USO TURÍSTICO DE LAS PLAYAS DE MARINA DE COPE (MURCIA

    Directory of Open Access Journals (Sweden)

    F. Belmonte Serrato

    2011-01-01

    Full Text Available El desarrollo de la agricultura intensiva y, especialmente, la ocupación agrícola de los fondos de las ramblas, ha ocasionado un desequilibrio sedimentario en las playas de Marina de COPE. Los retrocesos de la línea de costa oscilan entre 16 y 68 m y la disminución de la superficie se estima en un 50% de la correspondiente a 1956. Esto, ha reducido su capacidad de carga potencial que, para una intensidad de uso de 25 m2/usuario, ha pasado de 4.400 usuarios potenciales por día a 2.200. Lo que implica, para los meses de uso de estas playas, julio y agosto, una pérdida de capacidad de 130.000 usuarios.

  2. The impact of lactic acid bacteria on sourdough fermentation

    Directory of Open Access Journals (Sweden)

    Savić Dragiša S.

    2005-01-01

    Full Text Available The baking of sourdough breads represents one of the oldest biotechnological processes. Despite traditionality, sourdough bread has great potential because of its benefits. Sourdough is a mixture of flour and water that is dominated by a complex microflora composed of yeasts and lactic acid bacteria that are crucial in the preparation of bread dough. Lactic acid bacteria cause acidification by producing lactic acid that increases the shelf life of bread by preventing the growth of undesirable microorganisms and affects the nutritional value of bread by increasing the availability of minerals. In addition to these advantages, the use of sourdough fermentation also improves dough machinability, breadcrumb structure and the characteristic flavour of bread. Lactic acid bacteria in sourdough fermentation are well known representing both homofermentative and heterofermentative bacteria. They may originate from selected natural contaminants in the flour or from a starter culture containing one or more known species of lactic acid bacteria. Sourdough can be cultivated in bakeries or obtained from commercial suppliers. However, many bakeries in Europe still use spontaneously fermented sourdoughs, which have been kept metabolically active for decades by the addition of flour and water at regular intervals. The impact of lactic acid bacteria on sourdough fermentation and their influence on dough and bread quality was discussed on the basis of research and literature data.

  3. Consumers' risk elimination in fuel supply chain. The Attica's Marinas yacht fuelling case study

    Energy Technology Data Exchange (ETDEWEB)

    Liapis, Nikolaos [ELINOIL-HELLENIC PETROLEUM COMPANY, S.A., Kifisia (Greece); Zannikos, Fanourios [National Technical Univ. of Athens (Greece). Lab. of Fuels Technology and Lubricants

    2013-06-01

    Oil products distribution system is a complicated supply chain and includes a lot of uncertainties. A limited but quite interesting part of this system is yachting supply in marinas. Yachts usually are equipped with high efficiency and big horsepower modem engines; sea travelling is risky itself so fuel quality contributes significant in safety; many of the yachts are chartered for hired cruises and so operators have the right to purchase tax-free marine diesel, which creates conditions for smuggling and adulteration. All above create a great need for quality control in these fuels, as Greek oil companies do not apply at the moment Total Quality Management (TQM) for securing both quality specifications and quantity paid by the end user. In this research project the Laboratory of Fuel Technology and Lubricants of NTUA collected samples and analysed fuels delivered by tank trucks to yachts in six marinas in the district of Attica. These fuels were marketed by ELINOIL SA, a medium size oil distribution company, operating in Greece. ELINOIL has a market share of 6% of the Greek fuel market but is a market leader in yachting supply in Attica, having more than 50% of the specific market. Problems concerning fuel quality were analysed, direct or indirect causes were tracked, recorded and analysed, always in comparison with data from other Quality Control procedures applied from the company. A specially developed database was updated with facts and figures from incidents and quality issues covering this activity of the company during this period. The project, as it was targeted, detected the quality problems of the specific supply chain and ended to suggestions concerning the building of Quality Assurance System in yachting fuel supply. (orig.)

  4. Molecular mechanisms that underlie the sexual stimulant actions of Avicennia marina (Forssk.) Vierh. and Crocus sativus L.

    Science.gov (United States)

    Al-Rehaily, Adnan Jathlan; Alhowiriny, Tawfeq Abdullah; El-Tahir, Kamal Eh; Al-Taweel, Areej Mohammad; Perveen, Shagufta

    2015-01-01

    The effects of extracts and sub-fractions of Avicennia marina, Crocus sativus and sildenafil on the sexual behavior of male rats and their effects on the intracavernosal pressure (I.CV), intracavernosal cyclic GMP and dihydrotestosterone plasma level were examined. The sexual behavior was followed for four hours using infra-red video cameras to quantify the effects on various male sexual behaviors. The results revealed that the active sub-fraction in case of A. marina was the hexane fraction of the chloroform extracts (C/H) whereas that of C. sativus was the hexane fraction of the alcoholic extract (A/H). (C/H), (A/H) and sildenafil significantly increased the total sexual stimulation index from 53.8±2.7 (control) to 406±7.8, 225±4 and 401±30.1, respectively (P<0.001, N=6). They significantly increased the index of successful mounting and ejaculation from 2.6±0.5 (control) to 40±2.7, 21±2.3 and 18±1.7, respectively (P<0.01, N=6). They significantly increased the cyclic GMP level from 0.94±0.07 (control) to 3.1±0.13, 1.59±0.11 and 3.66±0.19 ng/mg wet tissue, respectively (P<0.05, N=7). They did not affect dihydrotestosterone plasma level. (C/H), (A/H) and sildenafil increased the (I.CV) pressure by 4.8±0.3, 1.4±0.8 and 4.2±0.9 mmHg. The (C/H) seemed to be more active than sildenafil and twice active than (A/H). Both extracts and sildenafil acted via an increase in cyclic GMP.

  5. Aerobic scope and cardiovascular oxygen transport is not compromised at high temperatures in the toad Rhinella marina.

    Science.gov (United States)

    Overgaard, Johannes; Andersen, Jonas L; Findsen, Anders; Pedersen, Pil B M; Hansen, Kasper; Ozolina, Karlina; Wang, Tobias

    2012-10-15

    Numerous recent studies convincingly correlate the upper thermal tolerance limit of aquatic ectothermic animals to reduced aerobic scope, and ascribe the decline in aerobic scope to failure of the cardiovascular system at high temperatures. In the present study we investigate whether this 'aerobic scope model' applies to an air-breathing and semi-terrestrial vertebrate Rhinella marina (formerly Bufo marinus). To quantify aerobic scope, we measured resting and maximal rate of oxygen consumption at temperatures ranging from 10 to 40°C. To include potential effects of acclimation, three groups of toads were acclimated chronically at 20, 25 and 30°C, respectively. The absolute difference between resting and maximal rate of oxygen consumption increased progressively with temperature and there was no significant decrease in aerobic scope, even at temperature immediately below the lethal limit (41-42°C). Haematological and cardiorespiratory variables were measured at rest and immediately after maximal activity at benign (30°C) and critically high (40°C) temperatures. Within this temperature interval, both resting and active heart rate increased, and there was no indication of respiratory failure, judged from high arterial oxygen saturation, P(O2) and [Hb(O2)]. With the exception of elevated resting metabolic rate for cold-acclimated toads, we found few differences in the thermal responses between acclimation groups with regard to the cardiometabolic parameters. In conclusion, we found no evidence for temperature-induced cardiorespiratory failure in R. marina, indicating that maintenance of aerobic scope and oxygen transport is unrelated to the upper thermal limit of this air-breathing semi-terrestrial vertebrate.

  6. Population genetic structure of eelgrass (Zostera marina) on the Korean coast: Current status and conservation implications for future management

    Science.gov (United States)

    Kim, Jae Hwan; Kang, Ji Hyoun; Jang, Ji Eun; Choi, Sun Kyeong; Kim, Min Ji; Park, Sang Rul; Lee, Hyuk Je

    2017-01-01

    Seagrasses provide numerous ecosystem services for coastal and estuarine environments, such as nursery functions, erosion protection, pollution filtration, and carbon sequestration. Zostera marina (common name “eelgrass”) is one of the seagrass bed-forming species distributed widely in the northern hemisphere, including the Korean Peninsula. Recently, however, there has been a drastic decline in the population size of Z. marina worldwide, including Korea. We examined the current population genetic status of this species on the southern coast of Korea by estimating the levels of genetic diversity and genetic structure of 10 geographic populations using eight nuclear microsatellite markers. The level of genetic diversity was found to be significantly lower for populations on Jeju Island [mean allelic richness (AR) = 1.92, clonal diversity (R) = 0.51], which is located approximately 155 km off the southernmost region of the Korean Peninsula, than for those in the South Sea (mean AR = 2.69, R = 0.82), which is on the southern coast of the mainland. South Korean eelgrass populations were substantially genetically divergent from one another (FST = 0.061–0.573), suggesting that limited contemporary gene flow has been taking place among populations. We also found weak but detectable temporal variation in genetic structure within a site over 10 years. In additional depth comparisons, statistically significant genetic differentiation was observed between shallow (or middle) and deep zones in two of three sites tested. Depleted genetic diversity, small effective population sizes (Ne) and limited connectivity for populations on Jeju Island indicate that these populations may be vulnerable to local extinction under changing environmental conditions, especially given that Jeju Island is one of the fastest warming regions around the world. Overall, our work will inform conservation and restoration efforts, including transplantation for eelgrass populations at the southern

  7. Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon

    Science.gov (United States)

    Bessa-Silva, Adam Rick; Vallinoto, Marcelo; Sodré, Davidson; da Cunha, Divino Bruno; Hadad, Dante; Asp, Nils Edvin; Sampaio, Iracilda; Schneider, Horacio; Sequeira, Fernando

    2016-01-01

    The Amazonian coast has several unique geological characteristics resulting from the interaction between drainage pattern of the Amazon River and the Atlantic Ocean. It is one of the most extensive and sedimentologically dynamic regions of the world, with a large number of continental islands mostly formed less than 10,000 years ago. The natural distribution of the cane toad (Rhinella marina), one of the world’s most successful invasive species, in this complex Amazonian system provides an intriguing model for the investigation of the effects of isolation or the combined effects of isolation and habitat dynamic changes on patterns of genetic variability and population differentiation. We used nine fast-evolving microsatellite loci to contrast patterns of genetic variability in six coastal (three mainlands and three islands) populations of the cane toad near the mouth of the Amazon River. Results from Bayesian multilocus clustering approach and Discriminant Analyses of Principal Component were congruent in showing that each island population was genetically differentiated from the mainland populations. All FST values obtained from all pairwise comparisons were significant, ranging from 0.048 to 0.186. Estimates of both recent and historical gene flow were not significantly different from zero across all population pairs, except the two mainland populations inhabiting continuous habitats. Patterns of population differentiation, with a high level of population substructure and absence/restricted gene flow, suggested that island populations of R. marina are likely isolated since the Holocene sea-level rise. However, considering the similar levels of genetic variability found in both island and mainland populations, it is reliable to assume that they were also isolated for longer periods. Given the genetic uniqueness of each cane toad population, together with the high natural vulnerability of the coastal regions and intense human pressures, we suggest that these

  8. FACILITIES PLANNING WORKSHOP FOR BLASTING SUPPORT THE ACTIVITY OF DEVELOPMENT AND REPAIR SHIP IN PT. JASA MARINA INDAH UNIT II

    Directory of Open Access Journals (Sweden)

    Samuel Samuel

    2012-07-01

    Full Text Available Blasting in the process of planning the workshop production of new building and ship repair to play a role in providing blasting and paint on the block that will be of erection. As a result of blasting workshop facilities that do not have resulted in low production capacity that can be achieved by this workshop, namely three block ships per month. Capacity blasting and paint shop in this low resulted in low productivity process stage (stage the previous workshops which of course result in a decrease in vessel productivity in general.                 In penelitiaan aims to plan for blasting and paint shop facility which has been adjusted to the planned production capacity of PT. JASA MARINA INDAH II units.                 In this study it - thing to note is to understand the data - the data field for research conducted in terms of both technical and economic terms, with the blasting and paint shop facilities on the construction or repair of ships that have been planned, then the effectiveness of the work and production flow at. Jasa Marina Indah II units can be known.                 Based on the analysis and calculation of both technical and economical it can be identified by the workshop on the process of blasting Blasting efficiency is obtained for 2.55 hours, at 10.16 hours during the painting process, while economical in terms of labor costs can be reduced blasting cost is Rp.930000    for          paint       and         Rp.1.23million

  9. The MARINA Risk Assessment Strategy: A Flexible Strategy for Efficient Information Collection and Risk Assessment of Nanomaterials

    Directory of Open Access Journals (Sweden)

    Peter M. J. Bos

    2015-11-01

    Full Text Available An engineered nanomaterial (ENM may actually consist of a population of primary particles, aggregates and agglomerates of various sizes. Furthermore, their physico-chemical characteristics may change during the various life-cycle stages. It will probably not be feasible to test all varieties of all ENMs for possible health and environmental risks. There is therefore a need to further develop the approaches for risk assessment of ENMs. Within the EU FP7 project Managing Risks of Nanoparticles (MARINA a two-phase risk assessment strategy has been developed. In Phase 1 (Problem framing a base set of information is considered, relevant exposure scenarios (RESs are identified and the scope for Phase 2 (Risk assessment is established. The relevance of an RES is indicated by information on exposure, fate/kinetics and/or hazard; these three domains are included as separate pillars that contain specific tools. Phase 2 consists of an iterative process of risk characterization, identification of data needs and integrated collection and evaluation of data on the three domains, until sufficient information is obtained to conclude on possible risks in a RES. Only data are generated that are considered to be needed for the purpose of risk assessment. A fourth pillar, risk characterization, is defined and it contains risk assessment tools. This strategy describes a flexible and efficient approach for data collection and risk assessment which is essential to ensure safety of ENMs. Further developments are needed to provide guidance and make the MARINA Risk Assessment Strategy operational. Case studies will be needed to refine the strategy.

  10. The fecal bacteria

    Science.gov (United States)

    Sadowsky, Michael J.; Whitman, Richard L.

    2011-01-01

    The Fecal Bacteria offers a balanced, integrated discussion of fecal bacteria and their presence and ecology in the intestinal tract of mammals, in the environment, and in the food supply. This volume covers their use in examining and assessing water quality in order to offer protection from illnesses related to swimming in or ingesting contaminated water, in addition to discussing their use in engineering considerations of water quality, modeling, monitoring, and regulations. Fecal bacteria are additionally used as indicators of contamination of ready-to-eat foods and fresh produce. The intestinal environment, the microbial community structure of the gut microbiota, and the physiology and genomics of this broad group of microorganisms are explored in the book. With contributions from an internationally recognized group of experts, the book integrates medicine, public health, environmental, and microbiological topics in order to provide a unique, holistic understanding of fecal bacteria. Moreover, it shows how the latest basic science and applied research findings are helping to solve problems and develop effective management strategies. For example, readers will discover how the latest tools and molecular approaches have led to our current understanding of fecal bacteria and enabled us to improve human health and water quality. The Fecal Bacteria is recommended for microbiologists, clinicians, animal scientists, engineers, environmental scientists, food safety experts, water quality managers, and students. It will help them better understand fecal bacteria and use their knowledge to protect human and environmental health. They can also apply many of the techniques and molecular tools discussed in this book to the study of a broad range of microorganisms in a variety of habitats.

  11. Effects of Hydrogen Sulfide (H2S) on Z. marina seedlings, seed germination and shoot density from 2013-01-16 to 2015-09-11 (NCEI Accession 0156588)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Multiple experiments were conducted to determine the effects hydrogen sulfide had on seedlings and seed germination in the seagrass Zostera marina. One study...

  12. The experimental studies of influence of hydrogen sulfide on species of eelgrass (Zostera japonica and Zostera marina) in Padilla Bay, coastal waters of southeast Alaska conducted from 2013-06-01 to 2013-09-30 (NCEI Accession 0137907)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two species of eelgrass can be found in Padilla Bay, Washington (Zostera japonica and Zostera marina) and act as a bioindicators of ecosystem health. Many factors...

  13. Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria

    NARCIS (Netherlands)

    Harmsen, HJM; Gibson, GR; Elfferich, P; Raangs, GC; Wildeboer-Veloo, ACM; Argaiz, A; Roberfroid, MB; Welling, GW

    2000-01-01

    Conventional cultivation and fluorescence in situ hybridization (FISH) using 16S rRNA-based probes were compared for the enumeration of human colonic bacteria. Groups of common intestinal anaerobic bacteria were enumerated in slurries prepared From fecal samples of three healthy volunteers. To intro

  14. Growth of Dunaliella tertiolecta and associated bacteria in photobioreactors.

    Science.gov (United States)

    Lakaniemi, Aino-Maija; Intihar, Veera M; Tuovinen, Olli H; Puhakka, Jaakko A

    2012-09-01

    The aim of this study was to test three flat-plate photobioreactor configurations for cultivation of marine green alga Dunaliella tertiolecta under non-axenic growth conditions and to characterize and quantify the associated bacteria. The photobioreactor cultivations were conducted using tap water-based media. Static mixers intended to enhance mixing and light utilization did not generally increase algal growth at the low light intensities used. The maximum biomass concentration (measured as volatile suspended solids) and maximum specific growth rate achieved in the flat plate with no mixer were 2.9 g l⁻¹ and 1.3 day⁻¹, respectively. Based on quantitative polymerase chain reaction, bacterial growth followed the growth of D. tertiolecta. Based on 16S rDNA amplification and denaturing gradient gel electrophoresis profiling, heterotrophic bacteria in the D. tertiolecta cultures mainly originated from the non-axenic algal inocula, and tap water heterotrophs were not enriched in high chloride media (3 % salinity). Bacterial communities were relatively stable and reproducible in all flat-plate cultivations and were dominated by Gammaproteobacteria, Flavobacteria, and Alphaproteobacteria.

  15. Cultivation of Pathogenic and Opportunistic Free-Living Amebas

    Science.gov (United States)

    Schuster, Frederick L.

    2002-01-01

    Free-living amebas are widely distributed in soil and water, particularly members of the genera Acanthamoeba and Naegleria. Since the early 1960s, they have been recognized as opportunistic human pathogens, capable of causing infections of the central nervous system (CNS) in both immunocompetent and immunocompromised hosts. Naegleria is the causal agent of a fulminant CNS condition, primary amebic meningoencephalitis; Acanthamoeba is responsible for a more chronic and insidious infection of the CNS termed granulomatous amebic encephalitis, as well as amebic keratitis. Balamuthia sp. has been recognized in the past decade as another ameba implicated in CNS infections. Cultivation of these organisms in vitro provides the basis for a better understanding of the biology of these amebas, as well as an important means of isolating and identifying them from clinical samples. Naegleria and Acanthamoeba can be cultured axenically in cell-free media or on tissue culture cells as feeder layers and in cultures with bacteria as a food source. Balamuthia, which has yet to be isolated from the environment, will not grow on bacteria. Instead, it requires tissue culture cells as feeder layers or an enriched cell-free medium. The recent identification of another ameba, Sappinia diploidea, suggests that other free-living forms may also be involved as causal agents of human infections. PMID:12097243

  16. PRODUCCIÓN DE ENZIMAS EXTRACELLARES POR BACTERIAS AISLADAS DE INVERTEBRADOS MARINOS

    Directory of Open Access Journals (Sweden)

    Jorge León

    2014-06-01

    Full Text Available Con el fin de seleccionar las bacterias marinas con la capacidad de producir enzimas extracelulares ( CEE , se analizaron muestras de Argopecten purpuratus y Crassostrea gigas en el cultivo , así como de otros invertebrados interticlal y bentónicos. La selección de cepas de la CEE de productores se llevó a cabo en Agar Marino ( MA con la adición del sustrato relevante ( almidón , caseína , Tween - 80 , lecitina , ADN y gelatina . La CEE evaluación cepas productoras se llevó a cabo en 102 aislamientos . Los resultados muestran que las bacterias asociadas TOA . purpuratusand C. gigashave las mejores actividades multienzimáticos ; Sin embargo , Semimytilus algosus, Tetrapigus niger y Thais chocolata también son fuentes importantes de productores de bacterias de la CEE. La actividad multienzimático cualitativa en MA ( zonas claras u opacas alrededor de las colonias en mm de diámetro varió de 6 a > 16 mm . La frecuencia de la producción multienzimático fue caseinase 62,74 % , entre esterasa 57,84 % , 52,94 % de la amilasa , la gelatinasa 38,23 % , 33,3 % DNAsa , agarasa 5,43 % y 90,0 % lecitinasa . Los resultados sugieren la posibilidad de usar cepas nativas para fines biotecnológicos

  17. Advancing gut microbiome research using cultivation

    DEFF Research Database (Denmark)

    Sommer, Morten OA

    2015-01-01

    Culture-independent approaches have driven the field of microbiome research and illuminated intricate relationships between the gut microbiota and human health. However, definitively associating phenotypes to specific strains or elucidating physiological interactions is challenging for metagenomic...... approaches. Recently a number of new approaches to gut microbiota cultivation have emerged through the integration of high-throughput phylogenetic mapping and new simplified cultivation methods. These methodologies are described along with their potential use within microbiome research. Deployment of novel...... cultivation approaches should enable improved studies of xenobiotic tolerance and modification phenotypes and allow a drastic expansion of the gut microbiota reference genome catalogues. Furthermore, the new cultivation methods should facilitate systematic studies of the causal relationship between...

  18. How to Cultivate the Student's Cultural Awareness

    Institute of Scientific and Technical Information of China (English)

    tian xiu ying

    2008-01-01

    Language and culture are inseparable and cultural awareness must be integrated with language teaching. How to cultivate the learners' cultural awareness is an important issue that we have to carry out in teaching practice in China.

  19. Obtención de una mezcla de proteínas con actividad antitumoral a partir de una bacteria marina

    OpenAIRE

    Vivian Almazán; Roberto Núñez; Mario Villaverde; Rita M. Pérez

    2006-01-01

    Las sustancias de origen marino han sido utilizadas por el hombre desde hace millones de años, sin embargo, su aislamiento, caracterizaci ón química y farmacológica, así como, el interés clínico por ellas han sidos estudiados hace tan solo cinco décadas. Cuba ha incrementado gradualmente las investigaciones relacionadas con la búsqueda de compuestos con actividad antitumoral. En el Departamento de Microbiología Aplicada del Centro de Bioproductos Marinos se aisló una cepa de origen marino con...

  20. Biodiversity and phylogenetic analysis of culturable bacteria indigenous to Khewra salt mine of Pakistan and their industrial importance Biodiversidade e análise filogenética de bactérias cultiváveis indígenas da mina de sal Khewra, Paquistão e sua importância industrial

    Directory of Open Access Journals (Sweden)

    Nasrin Akhtar

    2008-03-01

    Full Text Available Culturable bacterial biodiversity and industrial importance of the isolates indigenous to Khewra salt mine, Pakistan was assessed. PCR Amplification of 16S rDNA of isolates was carried out by using universal primers FD1 and rP1and products were sequenced commercially. These gene sequences were compared with other gene sequences in the GenBank databases to find the closely related sequences. The alignment of these sequences with sequences available from GenBank database was carried out to construct a phylogenetic tree for these bacteria. These genes were deposited to GenBank and accession numbers were obtained. Most of the isolates belonged to different species of genus Bacillus, sharing 92-99% 16S rDNA identity with the respective type strain. Other isolates had close similarities with Escherichia coli, Staphylococcus arlettae and Staphylococcus gallinarum with 97%, 98% and 99% 16S rDNA similarity respectively. The abilities of isolates to produce industrial enzymes (amylase, carboxymethylcellulase, xylanase, cellulase and protease were checked. All isolates were tested against starch, carboxymethylcellulose (CMC, xylane, cellulose, and casein degradation in plate assays. BPT-5, 11,18,19 and 25 indicated the production of copious amounts of carbohydrates and protein degrading enzymes. Based on this study it can be concluded that Khewra salt mine is populated with diverse bacterial groups, which are potential source of industrial enzymes for commercial applications.Avaliou-se a biodiversidade e a importância industrial de bactérias indígenas da mina de sal Khewra, Paquistão. Efetuou-se a amplificação do 16S rDNA dos isolados por PCR empregando-se os iniciadores universais FD1 e rP1, e os produtos foram seqüenciados comercialmente. Essas seqüências de genes foram comparadas com outras seqüências disponíveis no GenBank a fim de encontrar seqüências relacionadas, construindo-se uma árvore filogenética para essas bactérias. Os genes

  1. Anaerobic bacteria in otitis media.

    Science.gov (United States)

    Fulghum, R S; Daniel, H J; Yarborough, J G

    1977-01-01

    Anaerobic bacteria, Peptostrepotococcus intermedius and Propionibacterium acnes, were found in mixed culture specimens from four to ten tested cases of chronic secretory otitis media. These anaerobic bacteria were in a mixed infection flora with aerobic bacteria most often Staphylococcus epidermidis and Cornybacterium sp. which do not fit any established species. The findings of anaerobic bacteria in otitis media is consistent with the sporadic report of the involvement of anaerobic bacteria in otitis media in the literature since 1898.

  2. Prospect of Tea Cultivation & Processing in Pakistan

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    HistoryIn 1958, a farmer brought some tea seeds and plants from Bangladesh (then east Pakistan), and successfully cultivated them in district Mansehra. At that time, Pakistan was self-sufficient in tea that was produced in East Pakistan. After the separation (in 1971) of East Pakistan, Pakistan diverted attention to initial work on tea production. The Pakistan Agricultural Research Council (PARC) took over the charge of tea cultivation in 1976-77 and launched a project in 1980.

  3. Differential Responses of Nitrifier and Denitrifier to Dicyandiamide in Short-and Long-Term Intensive Vegetable Cultivation Soils

    Institute of Scientific and Technical Information of China (English)

    LIU Yi; YANG Yang; QIN Hong-ling; ZHU Yi-jun; WEI Wen-xue

    2014-01-01

    Nitriifcation inhibitors, such as dicyandiamide (DCD), have been shown to decrease leaching from urea- and ammonium-based fertilizers in agricultural soils. The effect of nitriifcation inhibitors on nitriifer and denitriifer in short-and long-term intensive vegetable cultivation soils was poorly understood. In this study, the pot trial was conducted to investigate the differential responses of nitriifer (amoA-containing bacteria) and denitriifer (nirK-containing bacteria) to DCD in short-(soil S) and long-term (soil L) intensive vegetable cultivation soils. Quantitative polymerase chain reaction (qPCR) and terminal restriction fragment length polymorphism (T-RFLP) were employed to detect the abundance and composition of amoA-and nirK-containing communities. The results indicated that application of DCD led to a consistently higher NH4+-N concentration during the whole incubation in soil L, while it was quickly decreased in soil S after 21 days. Furthermore, DCD induced more severe decrease of the abundance of amoA-containing bacteria in soil L than in soil S. However, the abundance of the nirK-containing community was not signiifcantly affected by DCD in both soils. Long-term vegetable cultivation resulted in a super-dominant amoA-containing bacteria group and less divergence in soil L compared with soil S, and DCD did not cause obvious shifts of the composition of ammonia-oxidising bacteria (AOB). On the contrary, both amoA-and nirK-containing bacterial compositions were inlfuenced by DCD in soil S. The results suggested that long-term intensive vegetable cultivation with heavy nitrogen fertilization resulted in signiifcant shifts of AOB community, and this community was sensitive to DCD, but denitriifers were not clearly affected by DCD.

  4. Implementing sponge physiological and genomic information to enhance the diversity of its culturable associated bacteria.

    Science.gov (United States)

    Lavy, Adi; Keren, Ray; Haber, Markus; Schwartz, Inbar; Ilan, Micha

    2014-02-01

    In recent years new approaches have emerged for culturing marine environmental bacteria. They include the use of novel culture media, sometimes with very low-nutrient content, and a variety of growth conditions such as temperature, oxygen levels, and different atmospheric pressures. These approaches have largely been neglected when it came to the cultivation of sponge-associated bacteria. Here, we used physiological and environmental conditions to reflect the environment of sponge-associated bacteria along with genomic data of the prominent sponge symbiont Candidatus Poribacteria sp. WGA-4E, to cultivate bacteria from the Red Sea sponge Theonella swinhoei. Designing culturing conditions to fit the metabolic needs of major bacterial taxa present in the sponge, through a combined use of diverse culture media compositions with aerobic and microaerophilic states, and addition of antibiotics, yielded higher diversity of the cultured bacteria and led to the isolation of novel sponge-associated and sponge-specific bacteria. In this work, 59 OTUs of six phyla were isolated. Of these, 22 have no close type strains at the species level (bacteria species, and some are probably new genera and even families.

  5. Effects of shifting cultivation on biological and biochemical characteris-tics of soil microorganisms in Khagrachari hill district, Bangladesh

    Institute of Scientific and Technical Information of China (English)

    Sohag Miah; S.M. Sirajul Haque; Wahida Sumi; Mohammad Mosharraf Hossain

    2014-01-01

    We collected soil samples from two representative sites at Aatmile of Khagarachari hill district in Chittagong Hill Tracts. One of the sites was under shifting cultivation and the other an adjacent 13-year old teak plantation. Both sites were in the same physiographic condition and same aspect with parable soil type, which enabled us to measure the effects of shifting cultivation on soil micro-flora. We studied soil phys-ico-chemical properties and the biochemical and biological properties of soil microbes. Moisture and organic matter content as well as fungi and bacterial populations, both in surface and subsurface soils, were signifi-cantly (p≤0.001) lower in shifting cultivated soils compared to soils not under shifting cultivation, i.e. the teak plantation site. The most abundant bacteria in surface (0-10 cm) and sub-surface (10-20 cm) soils under shifting cultivation were Pseudomonas diminuta and Shigella, respec-tively, while in corresponding soil layers of teak plantation, predominant microbes were Bacillus firmus (0-10 cm) and Xanthomonas (10-20 cm). The microbial population differences cannot be explained by soil texture differences because of the textural similarity in soils from the two sites but could be related to the significantly lower moisture and organic mat-ter contents in soils under shifting cultivation.

  6. Feasibility Study on Soilless Cultivation of Organic Ginseng

    Institute of Scientific and Technical Information of China (English)

    Yuji JIN; Hongyan ZHAO; Xiangguo LI; Renzhe PIAO

    2015-01-01

    Based on the present situation and problems concerning ginseng cultivation as well as soilless cultivation features,we analyze the growth indicators and input-output ratio of different ginseng cultivation patterns,and conform that the soilless cultivation technology for organic ginseng is feasible. And this technology provides theoretical basis and technological feasibility for the sustainable development of ginseng industry.

  7. STUDY ON ADHERENCE ABILITY OF PERIODONTAL PATHOGENS AND CARIOGENIC BACTERIA TO HYDROXYAPATITE DISKS

    Institute of Scientific and Technical Information of China (English)

    WANG Min-feng; LI De-yi; LI Zong-lin

    2006-01-01

    Objective To study the adherence activity of six representative periodontopathic and cariogenic bacteria to hydroxyapatite disks. Methods Six periodontopathic and cariogenic bacteria of P. gingivalis, A.actinomycetemcomitans, F. nucleatum, S. sanguis, A. viscosus and S. mutans were cultured in modified MD-300 chemostat according to total fifteen experimental groups of single-specie and each pair of periodontal pathogens and cariogenic bacteria, respectively. After 1h attached live bacteria on removable hydroxyapatite disks was analyzed by culture technologies to evaluate the adherence level. Results The adherence activity of periodontopathic and cariogenic bacteria to HA was in the following order: S. sanguis > A. viscosus > S. mutans > A. actinomycetemcomitans > F. nucleatum > P. gingivalis. The number of periodontopathic bacteria to HA was enhanced by S.sanguis and A. viscosus, respectively. When mix-cultivated with S. mutans, the colonization of P. gingivalis was reduced significantly( P<0.001 ). Periodontopathic bacteria had no effect on the adherence activity of S. mutans and A. viscosus, except S. sanguis. Conclusion It was showed that the adherence activity of periodontal pathogens was weaker than that of cariogenic bacteria and emphasized the importance of bacterial adherence in determining the level of bacterial colonization on tooth surfaces. It was suggested that periodontopathic bacteria can utilize initial colonizers to become those predominant bacteria in periodontal ecosystem, which maybe have close relation to the periodontopathic mechanism.

  8. The effects of a new therapeutic triclosan/copolymer/sodium-fluoride dentifrice on oral bacteria, including odorigenic species.

    Science.gov (United States)

    Furgang, David; Sreenivasan, Prem K; Zhang, Yun Po; Fine, Daniel H; Cummins, Diane

    2003-09-01

    This investigation examined the in vitro and ex vivo antimicrobial effects of a new dentifrice, Colgate Total Advanced Fresh, formulated with triclosan/copolymer/sodium fluoride, on oral bacteria, including those odorigenic bacteria implicated in bad breath. The effects of Colgate Total Advanced Fresh were compared to commercially available fluoride dentifrices that served as controls. Three experimental approaches were undertaken for these studies. In the first approach, the dentifrice formulations were tested in vitro against 13 species of oral bacteria implicated in bad breath. The second approach examined the antimicrobial activity derived from dentifrice that was adsorbed to and released from hydroxyapatite disks. In this approach, dentifrice-treated hydroxyapatite disks were immersed in a suspension of bacteria, and reduction in bacterial viability from the release of bioactive agents from hydroxyapatite was determined. The third approach examined the effect of treating bacteria immediately after their removal from the oral cavity of 11 adult human volunteers. This ex vivo study examined the viability of cultivable oral bacteria after dentifrice treatment for 2 minutes. Antimicrobial effects were determined by plating Colgate Total Advanced Fresh and control-dentifrice-treated samples on enriched media (for all cultivable oral bacteria) and indicator media (for hydrogen-sulfide-producing organisms), respectively. Results indicated that the antimicrobial effects of Colgate Total Advanced Fresh were significantly greater than either of the other dentifrices for all 13 oral odorigenic bacterial strains tested in vitro (P Colgate Total Advanced Fresh-treated hydroxyapatite disks were significantly more active in reducing bacterial growth than the other dentifrices tested (P oral bacteria with Colgate Total Advanced Fresh demonstrated a 90.9% reduction of all oral cultivable bacteria and a 91.5% reduction of oral bacteria producing hydrogen sulfide compared with

  9. Mycophagous soil bacteria

    NARCIS (Netherlands)

    Rudnick, M.B.

    2015-01-01

    Abstract

    Soil microorganisms evolved several strategies to compete for limited nutrients in soil. Bacteria of the genus Collimonas developed a way to exploit fungi as a source of organic nutrients. This strategy has been termed “mycophagy&r

  10. Antibiotic-Resistant Bacteria.

    Science.gov (United States)

    Longenecker, Nevin E.; Oppenheimer, Dan

    1982-01-01

    A study conducted by high school advanced bacteriology students appears to confirm the hypothesis that the incremental administration of antibiotics on several species of bacteria (Escherichia coli, Staphylococcus epidermis, Bacillus sublitus, Bacillus megaterium) will allow for the development of antibiotic-resistant strains. (PEB)

  11. Bacteria-surface interactions.

    Science.gov (United States)

    Tuson, Hannah H; Weibel, Douglas B

    2013-05-14

    The interaction of bacteria with surfaces has important implications in a range of areas, including bioenergy, biofouling, biofilm formation, and the infection of plants and animals. Many of the interactions of bacteria with surfaces produce changes in the expression of genes that influence cell morphology and behavior, including genes essential for motility and surface attachment. Despite the attention that these phenotypes have garnered, the bacterial systems used for sensing and responding to surfaces are still not well understood. An understanding of these mechanisms will guide the development of new classes of materials that inhibit and promote cell growth, and complement studies of the physiology of bacteria in contact with surfaces. Recent studies from a range of fields in science and engineering are poised to guide future investigations in this area. This review summarizes recent studies on bacteria-surface interactions, discusses mechanisms of surface sensing and consequences of cell attachment, provides an overview of surfaces that have been used in bacterial studies, and highlights unanswered questions in this field.

  12. Isolation of bacteria from ectomycorrhizae of Tuber aestivum Vittad

    Directory of Open Access Journals (Sweden)

    Milana Gryndler

    2013-12-01

    Full Text Available Fifteen different cultivation media were used to isolate bacteria with the idea to obtain taxa specifically associated with ectomycorrhizae of Tuber aestivum. Ectomycorrhizae were collected at the sampling points previously analyzed for bacterial molecular diversity. We isolated 183 bacterial strains and identified them on the basis of the partial sequence of 16S rDNA. Out of these isolates, only 4 corresponded to operational taxonomic units significantly associated with T. aestivum ectomycorrhizae in previous molecular study. Preliminary study of the effect of 12 selected isolates on growth of T. aestivum mycelium showed no stimulation and one isolate induced the damage of hyphae. Different isolation strategy has to be developed to increase the probability of cultivation of potentially important components of T. aestivum mycorrhizosphere.

  13. Turismo versus pesca artesanal. A propósito de la reserva marina de la isla de La Graciosa y los islotes del norte de Lanzarote

    Directory of Open Access Journals (Sweden)

    Gloria Cabrera Socorro

    2004-01-01

    Full Text Available La Reserva Marina de La Graciosa y los Islotes del Norte de Lanzarote (RMLGINL se creó en 1995 y, desde entonces, las actividades pesqueras de la población local y su cultura del mar han ido decreciendo progresivamente mientras que las actividades turísticas siguen emergiendo como la panacea en una pequeña isla, como La Graciosa, con no más de 600 habitantes. En este artículo tratamos de analizar cómo estos dos procesos están relacionados y qué papel está jugando la reserva marina en este caso. Usamos no sólo información cualitativa de los pescadores locales y de sus grupos domésticos, sino también cuantitativa contrastando algunos parámetros concretos como el número de pescadores y los barcos de pesca activos, los negocios relacionados con el sector servicios (restaurantes, apartamentos, etc., antes y después de implementación de la reserva marina. En este sentido, un importante elemento es la percepción de esta institución desde la población local, y la evolución de su actitud a favor o en contra. Estos procesos están relacionados con el diseño institucional de las reservas marinas en las Islas Canarias, en donde la participación de las poblaciones pesqueras locales está severamente limitada.

  14. Effects of the polychaetes Arenicola marina and Nereis diversicolor on microbial pyrene mineralization

    DEFF Research Database (Denmark)

    Timmermann, Karen; Banta, Gary T.; Johnsen, Anders R.;

    2008-01-01

    The effects of 2 polychaetes, Nereis diversicolor and Arenicola marina, on the microbial mineralization of the organic contaminant pyrene, a polycyclic aromatic hydrocarbon (PAH), were followed over 44 d. We also examined whether the effect of the polychaetes was caused by enhanced oxygen supply,...... by the increased oxygen supply due to burrow construction and irrigation. In contrast, these worms decreased pyrene bioavailability and, hence, counteracted to some extent the stimulating effect of irrigation....

  15. Spatial analysis on the critical habitats of bottlenose dolphins (Tursiops truncatus) and humpback whales (Megaptera novaeangliae) in Golfo Dulce, Costa Rica: Considerations for a marina construction project

    OpenAIRE

    Herra-Miranda, David; Pacheco-Polanco, Juan Diego; Oviedo, Lenin; Iñíguez, Miguel

    2015-01-01

    Golfo Dulce harbors an important resident population of inshore bottlenose dolphins (T. truncatus) and migrating humpback whales (M. novaeangliae, Northern and Southern Pacific populations). The present study offers a detailed spatial analysis of the utilization distribution of bottlenose dolphins (2005-2014: n= 407) and humpback whales (2010-2014: n= 167), assessing the potential impacts due to coastal development by a marina project overlapping their critical habitats. Records yielding spat...

  16. Comparación ontogénica de la frecuencia de muda en Rhinella marina (Anura, Bufonidae Ontogenetic comparison of the molting frequency in Rhinella marina (Anura: Bufonidae

    Directory of Open Access Journals (Sweden)

    Teófila M. Triana

    2013-03-01

    Full Text Available La muda es un proceso de renovación de la capa externa de la epidermis (estrato corneo de los anfibios, la cual suministra protección contra daños, patógenos y pérdida de agua. Este trabajo evalúa la frecuencia de muda entre juveniles y adultos de Rhinella marina (Linnaeus, 1758 y la tasa de ocurrencia entre el día y la noche. Para esto, se realizaron dos observaciones diarias (7 am y 7 pm, entre Octubre de 2011 y Marzo de 2012, a tres grupos de individuos clasificados según su tamaño longitud rostro-cloaca, como adultos (promedio=80 mm, juveniles medianos (promedio=19 mm y juveniles pequeños (promedio=13 mm. Estos animales fueron colocados en terrarios en el laboratorio y marcados en el dorso a través de un punto hecho con un corrector de tinta. La muda se determinó por la pérdida total de la marca y una coloración brillante en el dorso. Se encontró una diferencia significativa (Kruskal-Wallis, H=19.84, pMolting is a process of constant renewal of the outer layer of epidermis (stratum corneum in amphibians, which provides a barrier against injury, pathogens and evaporative water loss. This paper evaluates the molting frequency between juveniles and adults of Rhinella marina (Linnaeus, 1758 and between the night and day time. Two daily observations, at 7 am and 7 pm, were made between October 2011 and March 2012 to three groups of individuals, classified by their size, snout vent length, as adults (mean=80 mm, medium juveniles (mean=19 mm and small juveniles (mean=13 mm. The animals were placed in terrariums in the laboratory and marked on their back with a spot of correction fluid. The molting was determined by the total loss of the mark and a bright color on the dorsal skin. We found a significant difference (Kruskal-Wallis, H=19.84, p<0.0001 in the molting frequency among the three groups: adults=7.5 days, medium juveniles=5.4 days, and small juveniles=5.3 days. Also, between the number of molting frogs during the night and day

  17. Red tides caused by Exuviaella cordata and Exuviaella marina%卵甲藻Exuviaella cordata 和Exuviaella marina赤潮的初步研究

    Institute of Scientific and Technical Information of China (English)

    周遵春; 闫喜武; 庞军辉; 马志强; 薛克; 雷善敏

    2001-01-01

    Red tides caused by Exuviaella cordata and biology of Exuviaella marina (the first occurrence in shrimp ponds of Qingdui Fisheries Coorporation of Zhuanghe) were described. The reason why red tide occurred and its harmful effects were evaluated. The conformation characteristic, ecological habits of Exuviaella cordata and Exuviaella marina was briefly described. Three species of raft-cultured shellfishes collected at red tides in Dalian Wan Bay were tested for the shellfish poison.%报道了由心形卵甲藻(Exuviaella cordata)和海洋卵甲藻(Exuviaella marina)引发的赤潮(前者于1991年发生在庄河青堆水产公司虾池中,后者于1999年7月发生在大连湾)。并对赤潮发生的原因、危害进行了分析,对引发赤潮藻类的形态和生活习性进行了描述,对大连湾赤潮区养殖的3种贝类进行了贝毒检测。

  18. Black truffle cultivation: a global reality

    Directory of Open Access Journals (Sweden)

    Santiago Reyna

    2014-08-01

    Full Text Available Aim of study: In recent decades the cultivation of the black truffle Tuber melanosporum has expanded across all the Mediterranean-climate regions, but also to other regions outside the European standard for the species. We aim to describe the current extent of T. melanosporum cultivation.Area of study: Tuber melanosporum plantations in Europe, the Mediterranean basin, Australia, New Zealand, China, America and South Africa.Material and Methods: The socioeconomic impact of T. melanosporum cultivation, the way in which the current situation has been achieved and the knowledge needed for its progress are reviewed.Research highlights: T. melanosporum has been successfully cultivated in several countries outside its natural area, but many practices are still empirical and thus yields cannot be guaranteed. The recent advances in molecular techniques and genome science are helping to overcome some of the difficulties traditionally constraining truffle research. The role of truffles as a transitional element between agricultural and forestry activities makes its cultivation a paradigm of sustainable rural development.Keywords: Tuber melanosporum; Europe; Australia; New Zealand; Chile; USA.

  19. Alternative substrates for higher mushrooms mycelia cultivation

    Directory of Open Access Journals (Sweden)

    TETIANA KRUPODOROVA

    2015-12-01

    Full Text Available Cultivation of 29 species of higher mushroom mycelia on alternative substrates – wastes of Ukrainian oil-fat industry, has been investigated. The amount of mushroom mycelia obtaining on 12 investigated substrates varied significantly, from 1.0 g/L to 22.9 g/L on the 14th day of cultivation. The superficial cultivation adopted in this study allows for easy to choose appropriate medium (substrate for mycelia production. Alternative substrates (compared to glucose-peptone-yeast medium were selected for all studied species, from soybean cake – most suitable for the mycelial growth of 24 species, to walnut cake − suitable only for 2 species. The utilization of substrates has been evaluated by biological efficiency. The best index of biological efficiency varied from 19.0% to 41.6% depending on the mushroom species. It was established high biological efficiency of mycelia cultivation on substrates: wheat seed cake – Pleurotus djamor, Lyophyllum shimeji, Crinipellis schevczenkovi, Phellinus igniarius, Spongipellis litschaueri; oat seed cake – Ganoderma applanatum and G. lucidum; soybean cake – Hohenbuehelia myxotricha, Trametes versicolor, Morchella esculenta, Cordyceps sinensis, C. militaris, and Agrocybe aegerita; rape seed cake – Auriporia aurea; camelina seed cake – Fomes fomentarius. The cultivation of these species are perspective as a biotechnological process of agricultural wastes converted into mycelia, which could be used in different forms of products with therapeutic action: powder or tablets nutraceuticals or ingredients for functional foods.

  20. Prospects for Sorghum cultivation in Poland

    Directory of Open Access Journals (Sweden)

    Roman Prażak

    2016-06-01

    Full Text Available The article presents the origin and cultivation history of sorghum (Sorghum spp., its biology, requirements, cultivation techniques, and utilization. Sorghum is a cereal of the Poaceae. It is one of the most important crop plants grown in warmer parts of the world. Sorghum comes from Africa and therefore has very high heat requirements. In comparison with other crop plants, it is characterized by more efficient nutrient and water utilization. Sorghum grain is used to produce porridge, flour, syrup, sugar, ethanol, vegetable oil, starch, wax, paints, and animal fodder (the grain and entire plant. Sorghum straw is used to produce fibres, paper, and building materials. Sorghum has high energy value and can be an excellent source of renewable energy. It is easy to cultivate, with low soil and nutrient requirements. Due to its content of allelopathic compounds, it inhibits weed growth and has a phytosanitary effect. It is also resistant to disease and pests. It is a short-day plant, and in Polish climate conditions, it does not form sufficiently mature seeds, but produces a very high yield of green matter that can be used for fodder. Cultivation of sorghum during periodic water shortages may be an alternative solution for obtaining fodder when maize cultivation is unreliable.

  1. Levoglucosan-assimilating bacteria was isolated from levoglucosan treated soil suspension

    Energy Technology Data Exchange (ETDEWEB)

    Xie, H.J. [Shandong Univ., Jinan (China). Environment Research Inst.; Chinese Academy of Sciencess, Beijing (China). Dept. of Environmental Biotechnology, Research Center for Eco-Environmental Sciences; Zhuang, X.L.; Bai, Z.H.; Zhang, H.X. [Chinese Academy of Sciencess, Beijing (China). Dept. of Environmental Biotechnology, Research Center for Eco-Environmental Sciences

    2008-07-01

    Levoglucosan (LG) is emitted into the environment only during the combustion of wood and cigarettes. As such, it is a useful tracer for wood smoke in the atmosphere. It also has potential use as a fermentative carbon and energy resource in the fermentation industry. Depending on the initial cellulose content of woody feedstocks, the yield of LG may range from 38 to 58 per cent. This study examined whether the LG-assimilating bacterium could be isolated or not under LG treatment. The study also addressed the impact of the LG on the genetic diversity and the diversity of the cultivable fraction of the bacterial community in soil suspension. Genetic diversity was analyzed by Polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) fingerprinting. The changes in diversity were monitored by two different methods following a 90 day incubation period for 20 mg of LG per mL of soil suspension. The cultivable heterotrophic diversity was investigated by colony morphology on solid 1/5 lactobacillus medium. The results of the cultivable heterotrophic diversity and genetic diversity showed that there was an obvious decrease in diversity, and the amount of levoglucosan-assimilating bacteria also decreased. The application of LG had an obvious impact on Bacillus spp and Marinibacillus spp. Through cultivable analysis, five levoglucosan-assimilating bacteria were isolated from an LG treated soil suspension. Phylogenetic analysis of 16S rRNA gene sequences revealed that levoglucosan-assimilating bacteria belong to Bacillus and Marinibacillus. 2 refs., 2 tabs., 3 figs.

  2. Antibacterial activity of marine and black band disease cyanobacteria against coral-associated bacteria.

    Science.gov (United States)

    Gantar, Miroslav; Kaczmarsky, Longin T; Stanić, Dina; Miller, Aaron W; Richardson, Laurie L

    2011-01-01

    Black band disease (BBD) of corals is a cyanobacteria-dominated polymicrobial disease that contains diverse populations of heterotrophic bacteria. It is one of the most destructive of coral diseases and is found globally on tropical and sub-tropical reefs. We assessed ten strains of BBD cyanobacteria, and ten strains of cyanobacteria isolated from other marine sources, for their antibacterial effect on growth of heterotrophic bacteria isolated from BBD, from the surface mucopolysaccharide layer (SML) of healthy corals, and three known bacterial coral pathogens. Assays were conducted using two methods: co-cultivation of cyanobacterial and bacterial isolates, and exposure of test bacteria to (hydrophilic and lipophilic) cyanobacterial cell extracts. During co-cultivation, 15 of the 20 cyanobacterial strains tested had antibacterial activity against at least one of the test bacterial strains. Inhibition was significantly higher for BBD cyanobacteria when compared to other marine cyanobacteria. Lipophilic extracts were more active than co-cultivation (extracts of 18 of the 20 strains were active) while hydrophilic extracts had very limited activity. In some cases co-cultivation resulted in stimulation of BBD and SML bacterial growth. Our results suggest that BBD cyanobacteria are involved in structuring the complex polymicrobial BBD microbial community by production of antimicrobial compounds.

  3. Bioactive and Structural Metabolites of Pseudomonas and Burkholderia Species Causal Agents of Cultivated Mushrooms Diseases1

    Science.gov (United States)

    Andolfi, Anna; Cimmino, Alessio; Cantore, Pietro Lo; Iacobellis, Nicola Sante; Evidente, Antonio

    2008-01-01

    Pseudomonas tolaasii, P. reactans and Burkholderia gladioli pv. agaricicola, are responsible of diseases on some species of cultivated mushrooms. The main bioactive metabolites produced by both Pseudomonas strains are the lipodepsipeptides (LDPs) tolaasin I and II and the so called White Line Inducing Principle (WLIP), respectively, LDPs which have been extensively studied for their role in the disease process and for their biological properties. In particular, their antimicrobial activity and the alteration of biological and model membranes (red blood cell and liposomes) was established. In the case of tolaasin I interaction with membranes was also related to the tridimensional structure in solution as determined by NMR combined with molecular dynamic calculation techniques. Recently, five news minor tolaasins, tolaasins A–E, were isolated from the culture filtrates of P. tolaasii and their chemical structure was determined by extensive use of NMR and MS spectroscopy. Furthermore, their antimicrobial activity was evaluated on target micro-organisms (fungi—including the cultivated mushrooms Agaricus bisporus, Lentinus edodes, and Pleurotus spp.—chromista, yeast and bacteria). The Gram positive bacteria resulted the most sensible and a significant structure-activity relationships was apparent. The isolation and structure determination of bioactive metabolites produced by B. gladioli pv. agaricicola are still in progress but preliminary results indicate their peptide nature. Furthermore, the exopolysaccharide (EPS) from the culture filtrates of B. gladioli pv. agaricicola, as well as the O-chain and lipid A, from the lipopolysaccharide (LPS) of the three bacteria, were isolated and the structures determined. PMID:19787100

  4. Bioactive and structural metabolites of pseudomonas and burkholderia species causal agents of cultivated mushrooms diseases.

    Science.gov (United States)

    Andolfi, Anna; Cimmino, Alessio; Cantore, Pietro Lo; Iacobellis, Nicola Sante; Evidente, Antonio

    2008-05-09

    Pseudomonas tolaasii, P. reactans and Burkholderia gladioli pv. agaricicola, are responsible of diseases on some species of cultivated mushrooms. The main bioactive metabolites produced by both Pseudomonas strains are the lipodepsipeptides (LDPs) tolaasin I and II and the so called White Line Inducing Principle (WLIP), respectively, LDPs which have been extensively studied for their role in the disease process and for their biological properties. In particular, their antimicrobial activity and the alteration of biological and model membranes (red blood cell and liposomes) was established. In the case of tolaasin I interaction with membranes was also related to the tridimensional structure in solution as determined by NMR combined with molecular dynamic calculation techniques. Recently, five news minor tolaasins, tolaasins A-E, were isolated from the culture filtrates of P. tolaasii and their chemical structure was determined by extensive use of NMR and MS spectroscopy. Furthermore, their antimicrobial activity was evaluated on target micro-organisms (fungi-including the cultivated mushrooms Agaricus bisporus, Lentinus edodes, and Pleurotus spp.-chromista, yeast and bacteria). The Gram positive bacteria resulted the most sensible and a significant structure-activity relationships was apparent. The isolation and structure determination of bioactive metabolites produced by B. gladioli pv. agaricicola are still in progress but preliminary results indicate their peptide nature. Furthermore, the exopolysaccharide (EPS) from the culture filtrates of B. gladioli pv. agaricicola, as well as the O-chain and lipid A, from the lipopolysaccharide (LPS) of the three bacteria, were isolated and the structures determined.

  5. INFLUENCE OF CULTIVATION CONDITIONS ON ANTIMICROBIAL PROPERTIES OF Nocardia vaccinii ІMV B-7405 SURFACTANTS

    Directory of Open Access Journals (Sweden)

    Т. P.

    2016-02-01

    Full Text Available The aim of the work was investigation of antimicrobial effect of Nocardia vaccinii ІMV B-7405 surfactants, synthesized in various culture conditions, against phytopathogenic bacteria of genera Pseudomonas, Xanthomonas, and Pectobacterium. The antimicrobial properties of surfactant were determined in suspension culture by Koch method and also by index of the minimum inhibitory concentration. Surfactants were extracted from supernatant of cultural liquid using mixture of chloroform and methanol (2: 1. It has been established that antimicrobial properties of surfactants depend on the nature of the carbon source in the medium (refined vegetable oil, as well as waste oil after frying potatoes and meat, glycerol, the duration of the cultivation (5 and 7 days, the degree of purification of the surfactants (the supernatant of cultural liquid, purified surfactants solution and the test culture type. The highest antimicrobial activity was exhibited by purified surfactants solutions synthesized by microorganisms on the waste oil after potato frying (decreased survival of pathogenic bacteria by 50–95%, and surfactants formed within 7 days of strain B-7405 ІMV cultivation on all test substrates (minimum inhibitory concentration 7–40 µg/mL, which is several times lower than the surfactant, synthesized for 5 days. These data are promising for the development of ecologically friendly biopreparations for the regulation of the number of phytopathogenic bacteria.

  6. La corrosión en atmósferas marinas. Efecto de la distancia a la costa

    Directory of Open Access Journals (Sweden)

    Chico, B.

    1998-05-01

    Full Text Available In marine atmospheres the deposition of saline particles on the surface of metals intensifies the metallic corrosion process. However, quantitative information about the effect of atmospheric salinity on metallic corrosion is very scarce. This paper reports the relationship between salinity and metallic corrosion, where a clear linear relation (r = 0.97 has been found for a broad interval of salinities (4-500 mg Cl-/m2d, as well as the relationship between salinity (or metallic corrosion and distance from the coast. A hyperbolic function seems to be established between both variables; there is an exponential drop in salinity (or corrosion as shoreline distance increases tending towards an asymptotic value. The study has been based on information obtained from field research conducted at a marine atmosphere in Tarragona (Spain and data compiled from the literature.

    En las atmósferas marinas, el depósito de partículas salinas sobre la superficie de los metales, acelera el proceso de corrosión metálica. Sin embargo, es muy escasa la información cuantitativa acerca del efecto de la salinidad atmosférica sobre la corrosión metálica. Este trabajo presenta la relación existente entre salinidad y corrosión metálica, encontrándose una clara relación lineal (r = 0,97 para un amplio intervalo de salinidades (4-500 mg Cl-/m2d, así como la relación existente entre salinidad (o corrosión metálica y distancia a la costa. Aquí, parece establecerse una función hiperbólica entre ambas variables, existiendo un decrecimiento exponencial de la salinidad (o corrosión a medida que aumenta la distancia a la costa, tendiendo hacia un valor asintótico. Este estudio analiza la información obtenida en una zona de experimentación ubicada en una atmósfera marina en Tarragona (España junto con datos recopilados de la literatura.

  7. COVE, MARINA, and the Future of On-Board Processing (OBP) Platforms for CubeSat Science Missions

    Science.gov (United States)

    Pingree, P.; Bekker, D. L.; Bryk, M.; DeLucca, J.; Franklin, B.; Hancock, B.; Klesh, A. T.; Meehan, C.; Meshkaty, N.; Nichols, J.; Peay, C.; Rider, D. M.; Werne, T.; Wu, Y.

    2012-12-01

    The CubeSat On-board processing Validation Experiment (COVE), JPL's first CubeSat payload launched on October 28, 2011, features the Xilinx Virtex-5QV Single event Immune Reconfigurable FPGA (SIRF). The technology demonstration mission was to validate the SIRF device running an on-board processing (OBP) algorithm developed to reduce the data set by 2-orders of magnitude for the Multi-angle SpectroPolarimetric Imager (MSPI), an instrument under development at JPL (PI: D. Diner). COVE has a single data interface to the CubeSat flight computer that is used to transfer a static image taken from the CubeSat camera and store it to local memory where the FPGA then reads it to run the algorithm on it. In the next generation COVE design, called MARINA, developed for the GRIFEX CubeSat project, the OBP board is extended, using rigid-flex PCB technology, to provide an interface to a JPL-developed Read-Out Integrated Circuit (ROIC) hybridized to a detector developed by Raytheon. In this configuration the focal plane array (FPA) data can be streamed directly to the FPGA for data processing or for storage to local memory. The MARINA rigid-flex PCB design is integrated with a commercial camera lens to create a 1U instrument payload for integration with a CubeSat under development by the University of Michigan and planned for launch in 2014. In the GRIFEX technology demonstration, the limited on-board storage capacity is filled by high-rate FPA data in less than a second. The system is also limited by the CubeSat downlink data rate and several ground station passes are required to transmit this limited amount of data. While this system is sufficient to validate the ROIC technology on-orbit, the system cannot be operated in a way to perform continuous science observations due to the on-board storage and data downlink constraints. In order to advance the current platform to support sustained science observations, more on-board storage is needed. Radiation tolerant memory

  8. Ensifer, Phyllobacterium and Rhizobium species occupy nodules of Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a Canadian site without a history of cultivation

    Science.gov (United States)

    Phage resistant and susceptible bacteria from nodules of alfalfa and sweet clover grown at a site without a known history of cultivation, were identified as Ensifer, Rhizobium and Phyllobacterium species based on sequence analysis of ribosomal (16S and 23S rRNA)and protein encoding (atpD and recA) g...

  9. Is Your ATM Dispensing Bacteria?

    Science.gov (United States)

    ... news/fullstory_162067.html Is Your ATM Dispensing Bacteria? Study in New York City found most of ... keypads in New York City were covered in bacteria, researchers reported, with most of the microbes coming ...

  10. MICROFLORA CULTIVABLE Y ENDOMICORRIZAS OBTENIDAS EN HOJARASCA DE BOSQUE (PÁRAMO GUERRERO FINCA PUENTE DE TIERRA ZIPAQUIRÁ, COLOMBIA Cultivable Microflora and Endomycorrhizas Obtained in Litter Forest (Paramo Guerrero Finca Puente de Tierra Zipaquirá, Colombia

    Directory of Open Access Journals (Sweden)

    ELEONORA BERNAL

    2006-06-01

    Full Text Available Se realizó el recuento de microorganismos cultivables (bacterias y hongos, microorganismos celulolíticos y endomicorrizas presentes en la hojarasca de bosque (finca Puente de Tierra en el páramo Guerrero, Colombia. Los microorganismos aislados con mayor frecuencia pertenecían a los géneros Staphylococcus, Bacillus, Pseudomonas, Micrococcus, Penicillium, Rhodotorula y se aisló una cepa de Cladosporium sp. en un medio selectivo con carboximetil celulosa. Así mismo, se encontraron ocho morfotipos de endomicorrizas, entre los cuales predominaron especies de Glomus y Acaulospora. Este estudio contribuye con el conocimiento de la microbiota cultivable de hojarasca, que ha sido poco explorada en ecosistemas de páramo.The count of cultivable microorganisms (bacteria and fungi, cellulolytic microorganisms and endomycorrhizas present in litter forest (property Puente de Tierra in the Guerrero’s moor, Colombia was made. The most frequently isolated microorganisms belonged to the Staphylococcus, Bacillus, Pseudomonas, Micrococcus, Penicillium and Rhodotorula genus and Cladosporium sp., which is a cellulolytic microorganism, was isolated in carboxymethyl cellulose agar. In addition eight morphotypes of endomycorrhizas were found, species of Glomus and Acaulospora predominated among them. This study contributes with the knowledge of the cultivable microorganisms of litter that have been little explored in moor ecosystems.

  11. Genomics of oral bacteria.

    Science.gov (United States)

    Duncan, Margaret J

    2003-01-01

    Advances in bacterial genetics came with the discovery of the genetic code, followed by the development of recombinant DNA technologies. Now the field is undergoing a new revolution because of investigators' ability to sequence and assemble complete bacterial genomes. Over 200 genome projects have been completed or are in progress, and the oral microbiology research community has benefited through projects for oral bacteria and their non-oral-pathogen relatives. This review describes features of several oral bacterial genomes, and emphasizes the themes of species relationships, comparative genomics, and lateral gene transfer. Genomics is having a broad impact on basic research in microbial pathogenesis, and will lead to new approaches in clinical research and therapeutics. The oral microbiota is a unique community especially suited for new challenges to sequence the metagenomes of microbial consortia, and the genomes of uncultivable bacteria.

  12. Manufacture of Probiotic Bacteria

    Science.gov (United States)

    Muller, J. A.; Ross, R. P.; Fitzgerald, G. F.; Stanton, C.

    Lactic acid bacteria (LAB) have been used for many years as natural biopreservatives in fermented foods. A small group of LAB are also believed to have beneficial health effects on the host, so called probiotic bacteria. Probiotics have emerged from the niche industry from Asia into European and American markets. Functional foods are one of the fastest growing markets today, with estimated growth to 20 billion dollars worldwide by 2010 (GIA, 2008). The increasing demand for probiotics and the new food markets where probiotics are introduced, challenges the industry to produce high quantities of probiotic cultures in a viable and stable form. Dried concentrated probiotic cultures are the most convenient form for incorporation into functional foods, given the ease of storage, handling and transport, especially for shelf-stable functional products. This chapter will discuss various aspects of the challenges associated with the manufacturing of probiotic cultures.

  13. Exopolysaccharides from Marine Bacteria

    Institute of Scientific and Technical Information of China (English)

    CHI Zhenming; FANG Yan

    2005-01-01

    Microbial polysaccharides represent a class of important products of growing interest for many sectors of industry. In recent years, there has been a growing interest in isolating new exopolysaccharides (EPSs)-producing bacteria from marine environments, particularly from various extreme marine environments. Many new marine microbial EPSs with novel chemical compositions, properties and structures have been found to have potential applications in fields such as adhesives,textiles, pharmaceuticals and medicine for anti-cancer, food additives, oil recovery and metal removal in mining and industrial waste treatments, etc This paper gives a brief summary of the information about the EPSs produced by marine bacteria,including their chemical compositions, properties and structures, together with their potential applications in industry.

  14. Significance of anaerobes and oral bacteria in community-acquired pneumonia.

    Directory of Open Access Journals (Sweden)

    Kei Yamasaki

    Full Text Available BACKGROUND: Molecular biological modalities with better detection rates have been applied to identify the bacteria causing infectious diseases. Approximately 10-48% of bacterial pathogens causing community-acquired pneumonia are not identified using conventional cultivation methods. This study evaluated the bacteriological causes of community-acquired pneumonia using a cultivation-independent clone library analysis of the 16S ribosomal RNA gene of bronchoalveolar lavage specimens, and compared the results with those of conventional cultivation methods. METHODS: Patients with community-acquired pneumonia were enrolled based on their clinical and radiological findings. Bronchoalveolar lavage specimens were collected from pulmonary pathological lesions using bronchoscopy and evaluated by both a culture-independent molecular method and conventional cultivation methods. For the culture-independent molecular method, approximately 600 base pairs of 16S ribosomal RNA genes were amplified using polymerase chain reaction with universal primers, followed by the construction of clone libraries. The nucleotide sequences of 96 clones randomly chosen for each specimen were determined, and bacterial homology was searched. Conventional cultivation methods, including anaerobic cultures, were also performed using the same specimens. RESULTS: In addition to known common pathogens of community-acquired pneumonia [Streptococcus pneumoniae (18.8%, Haemophilus influenzae (18.8%, Mycoplasma pneumoniae (17.2%], molecular analysis of specimens from 64 patients with community-acquired pneumonia showed relatively higher rates of anaerobes (15.6% and oral bacteria (15.6% than previous reports. CONCLUSION: Our findings suggest that anaerobes and oral bacteria are more frequently detected in patients with community-acquired pneumonia than previously believed. It is possible that these bacteria may play more important roles in community-acquired pneumonia.

  15. Cable Bacteria in Freshwater Sediments

    OpenAIRE

    Risgaard-Petersen, Nils; Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

    2015-01-01

    In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the fre...

  16. Zeolites as possible biofortifiers in Maitake cultivation

    Directory of Open Access Journals (Sweden)

    Vunduk Jovana

    2014-01-01

    Full Text Available The levels of Ni, Cu and Mg in Grifola frondosa (also known as Maitake mushroom fruit body produced on zeolite Minazel Plus (MG-supplemented substrate were measured with inductively coupled plasma optical emission spectrometry (ICP-OES. Two different concentrations of MG were added to the substrate for mushroom cultivation. Levels of selected metals were measured in cultivated dry carpophores. The content of Ni increased in fruit bodies produced on supplemented substrate, while in case of Cu, a pronounced decrease was observed. When two different concentrations of MG were implemented, the Mg level showed both positive and negative trend, depending on the applied concentration of zeolite. MG in a concentration of 1% showed the strongest influence on the observed elements in the cultivated fruiting body of Maitake mushroom. [Projekat Ministarstva nauke Republike Srbije, br. 46010

  17. Cultivation of EFL Learners’Intercultural Competence

    Institute of Scientific and Technical Information of China (English)

    夏晨

    2012-01-01

      Nowadays, educators from home and abroad believe that learning a foreign language means learning a great deal of the foreign civilization and culture. And the utmost goal of language teaching is to cultivate EFL learners’communicative competence, but not merely the linguistic knowledge. Thus, teaching a foreign language is more than teaching new words, expressions and grammar rules, but should also incorporate the target culture elements into language knowledge. In order to improve EFL learners’English proficiency, teachers must make efforts to cultivate EFL learners’intercultural competence and promote their sensibility and adaptability to the differences between Chinese culture and the Western culture. Only by doing so, can EFL learners communicate with native speakers appropriately and smoothly. This pa-per proposes some effective teaching techniques and methods that can be applied in English classroom to cultivate Chinese EFL learners’in-tercultural competence.

  18. Application of photobioreactors to cultivation of microalgae

    Institute of Scientific and Technical Information of China (English)

    陈雷; 王光玉

    2003-01-01

    An overview of photobioreactors now in use for production of microalgae world wide is presented, andthe application of photobioreactors to the cultivation of microalgae is discussed in detail. It is pointed out thathigh cell density and industrial production of microalgae can be achieved using many kinds of closed photobiore-actors including fermentor, tubular and flat plate photobioreactors, and the cultivation of Spirulina, Chlorella,Dunaliella tertiolecta and Porphyridium cruentrim by photobioreactors can achieve higher and steadier produc-tivity than the cultivation of microalgae by an open air system. More and more researches indicate that tubularand flat plate photobioreactors are the development trend for photobioreactors with bubbles and air lift stirrers,and high bright light-emitting diodes are the most economic light source with great potential for future develop-ment of photobioreactors. Photobioreactors can also be used for the production of high-value metabolite ( EPA orDHA) using some microalgae species for energy development and environment protection.

  19. Multiple outcomes of cultivation in the Sahel

    DEFF Research Database (Denmark)

    Rasmussen, Laura Vang; Reenberg, Anette

    2015-01-01

    A default assumption about the Sahel is that farmers consider food provision for the family as the sole reason for cultivation. The degree to which this ‘cultivation for food’ assumption has been embedded in the scientific literature on land use changes is signified by the fact that hardly any...... of agriculture in the Global North, the study explores agricultural transitions in two villages in Burkina Faso. The analysis reveals that several household types exist, and one cannot assume that food provision is and always has been the main cultivation outcome. On the contrary, it was found that households...... argues that researchers and policy-makers must face the reality of new agricultural transitional pathways in the Global South....

  20. Long term cultivation of larger benthic Foraminifera

    Science.gov (United States)

    Wöger, Julia; Eder, Wolfgang; Kinoshita, Shunichi; Antonino, Briguglio; Carles, Ferrandes-Cañadell; Hohenegger, Johann

    2015-04-01

    Benthic Foraminifera are used in a variety of applications employing numerous different methods, i.e. ecological monitoring, studying the effects of ocean acidification, reconstructing palaeo-bathymetry or investigating palaeo-salinity and palaeo-temperature to name only a few. To refine our understanding of ecological influences on larger benthic foraminiferal biology and to review inferences from field observations, culture experiments have become an indispensable tool. While culture experiments on smaller benthic foraminifera have become increasingly frequent in the past century, reports of the cultivation of symbiont bearing larger Foraminifera are rare. Generally, cultivation experiments can be divided into two groups: Culturing of populations and cultivation of single specimens allowing individual investigation. The latter differ form the former by several restrictions resulting from the need to limit individual motility without abridging microenvironmental conditions in the Foraminiferans artificial habitat, necessary to enable the individual to development as unfettered as possible. In this study we present first experiences and preliminary results of the long-term cultivation of larger benthic Foraminifera conducted at the 'Tropical Biosphere Research Station Sesoko Island, University of the Ryukyus', Japan, trying to reproduce natural conditions as closely as possible. Individuals of three species of larger benthic Foraminifera (Heterostegina depressa, Palaeonummulites venosus and Operculina complanata) have been cultured since April 2014. At the time of the general assembly the cultivation experiments will have been going on for more than one year, with the aim to investigate growth rates, longevities and reproduction strategies for comparison with results statistically inferred from application of the of the 'natural laboratory' method. The most important factor influencing foraminiferal health and development was found to be light intensity and light

  1. Cellulase and xylanase productions by isolated Amazon Bacillus strains using soybean industrial residue based solid-state cultivation

    Directory of Open Access Journals (Sweden)

    Heck Júlio X.

    2002-01-01

    Full Text Available In Brazil, a large amount of a fibrous residue is generated as result of soybean (Glycine max protein production. This material, which is rich in hemicellulose and cellulose, can be used in solid state cultivations for the production of valuable metabolites and enzymes. In this work, we studied the bioconversion of this residue by bacteria strains isolated from water and soil collected in the Amazon region. Five strains among 87 isolated bacteria selected for their ability to produce either celullases or xylanases were cultivated on the aforementioned residue. From strain BL62, identified as Bacillus subtilis, it was obtained a preparation showing the highest specific cellulase activity, 1.08 UI/mg protein within 24 hours of growth. Concerning xylanase, the isolate BL53, also identified as Bacillus subtilis, showed the highest specific activity for this enzyme, 5.19 UI/mg protein within 72 hours of cultivation. It has also been observed the production of proteases that were associated with the loss of cellulase and xylanase activities. These results indicated that the selected microorganisms, and the cultivation process, have great biotechnological potential.

  2. Phenylhydrazines in the cultivated mushroom (Agaricus bisporus)

    DEFF Research Database (Denmark)

    Andersson, H. C.; Gry, Jørn

    2004-01-01

    to provide data for the evaluation of whether the consumption of the cultivated mushroom constitutes a human risk. The present report summarises the Nordic seminar which had the aim to present Nordic studies and to promote exchange of information between chemists and toxicologists in the field of Agaricus...... bisporus research. American, English and Czech researchers gave an up-to-date overview on the cultivated mushroom and its hydrazines and reviewed their ongoing research. Finally, Nordic researchers summarised their chemical and toxicological studies on behalf of the Nordic Project Group on Phenylhydrazines...

  3. In vitro cultivation of Maritrema novaezealandensis (Microphallidae)

    DEFF Research Database (Denmark)

    Fredensborg, Brian Lund; Poulin, R

    2005-01-01

    and Halicarcinus whitei, were incubated in either: (1) 0.85% saline solution, (2) the commercial cell culture medium, NCTC-109, (3) NCTC-109 supplemented with 20%, or (4) NCTC-109 supplemented with 40% chicken serum. Furthermore, excysted metacercariae were cultured for 5 days in each of the three media: NCTC-109...... cultured in media with a supplement of chicken serum and reached a maximum after 2 days of cultivation. Growth, however, did not occur after the first day of cultivation in any of the three media....

  4. Population Dynamic of Dendronephthya sp.-Associated Bacteria in Natural and Artificial Habitats

    Directory of Open Access Journals (Sweden)

    SUSAN SOKA

    2011-06-01

    Full Text Available Dendronephthya sp. is a soft coral that has huge distribution starting from Indopacific, Tonga, Solomon Islands to Great Barrier Reef in Australia. However, this soft corals survive only in short period after cultivation in artificial habitat (aquarium. Recent study showed that the soft coral Dendronephtya sp. has an association or symbiotic relationship with several bacteria, commonly known as coral associated bacteria (CAB. In this study, we compared the population dynamic of Dendronephthya sp.-associated bacteria in natural and artificial habitat, resulting different bacterial community profiles using terminal restriction fragment length polymorphism (T-RFLP analysis of bacterial community DNA. There were 15 main classes of bacterial population identified along with uncultured microorganism, uncultured organism, uncultured bacteria and unidentified organism. Members of Actinobacteria, Arthrobacteria, Chlorobia, Caldilineae, -proteobacteria and Proteobacteria were predicted to give contributions in the survival ability of both Dendronephthya sp. The cultivation of soft corals after 2 weeks in artificial habitat increases bacterial population similarity on 2 different samples by 10%. Bacterial population similarity in artificial habitat would increase along with the longer cultivation time of soft corals.

  5. Lanfrediella amphicirrus gen. nov. sp. nov. Nematotaeniidae (Cestoda: Cyclophyllidea, a tapeworm parasite of Rhinella marina (Linnaeus, 1758 (Amphibia: Bufonidae

    Directory of Open Access Journals (Sweden)

    Francisco Tiago de Vasconcelos Melo

    2011-09-01

    Full Text Available The family Nematotaeniidae, tapeworms commonly found in the small intestines of amphibians and reptiles, includes 27 recognised species distributed among four genera: Bitegmen Jones, Cylindrotaenia Jewell, Distoichometra Dickey and Nematotaenia Lühe. The taxonomy of these cestodes is poorly defined, due in part to the difficulties of observing many anatomical traits. This study presents and describes a new genus and species of nematotaeniid parasite found in cane toads (Rhinella marina from eastern Brazilian Amazonia. The cestodes were collected during the necropsy of 20 hosts captured in the urban area of Belém, Pará. The specimens were fixed and processed for light microscopy, scanning electron microscopy (SEM and three-dimensional (3D reconstruction. Samples were also collected for molecular analyses. The specimens presented a cylindrical body, two testes and paruterine organs. However, they could not be allocated to any of the four existing nematotaeniid genera due to the presence of two each of dorsal compact medullary testes, cirri, cirrus pouches, genital pores, ovaries and vitelline glands per mature segment. Lanfrediella amphicirrus gen. nov. sp. nov. is the first nematotaeniid studied using Historesin analysis, SEM and 3D reconstruction, and it is the second taxon for which molecular data have been deposited in GenBank.

  6. Establishing a baseline for regional scale monitoring of eelgrass (Zostera marina) habitat on the lower Alaska Peninsula

    Science.gov (United States)

    Hogrefe, Kyle R.; Ward, David H.; Donnelly, Tyrone F.; Dau, Niels

    2014-01-01

    Seagrass meadows, one of the world’s most widespread and productive ecosystems, provide a wide range of services with real economic value. Worldwide declines in the distribution and abundance of seagrasses and increased threats to coastal ecosystems from climate change have prompted a need to acquire baseline data for monitoring and protecting these important habitats. We assessed the distribution and abundance of eelgrass (Zostera marina) along nearly 1200 km of shoreline on the lower Alaska Peninsula, a region of expansive eelgrass meadows whose status and trends are poorly understood. We demonstrate the effectiveness of a multi-scale approach by using Landsat satellite imagery to map the total areal extent of eelgrass while integrating field survey data to improve map accuracy and describe the physical and biological condition of the meadows. Innovative use of proven methods and processing tools was used to address challenges inherent to remote sensing in high latitude, coastal environments. Eelgrass was estimated to cover ~31,000 ha, 91% of submerged aquatic vegetation on the lower Alaska Peninsula, nearly doubling the known spatial extent of eelgrass in the region. Mapping accuracy was 80%–90% for eelgrass distribution at locations containing adequate field survey data for error analysis.

  7. Spergularia marina induces glucagon-like peptide-1 secretion in NCI-H716 cells through bile acid receptor activation.

    Science.gov (United States)

    Kim, Kyong; Lee, Yu Mi; Rhyu, Mee-Ra; Kim, Hye Young

    2014-11-01

    Spergularia marina Griseb. (SM) is a halophyte that grows in mud flats. The aerial portions of SM have been eaten as vegetables and traditionally used to prevent chronic diseases in Korea. However, there has been no scientific report that demonstrates the pharmacological effects of SM. Glucagon-like peptide-1 (GLP-1) is important for the maintenance of glucose and energy homeostasis through acting as a signal in peripheral and neural systems. To discover a functional food for regulating glucose and energy homeostasis, we evaluated the effect of an aqueous ethanolic extract (AEE) of SM on GLP-1 release from enteroendocrine NCI-H716 cells. In addition, we explored the Takeda G-protein-coupled receptor 5 (TGR5) agonist activity of AEE-SM in Chinese hamster ovary (CHO)-K1 cells transiently transfected with human TGR5. As a result, treatment of NCI-H716 cells with AEE-SM increased GLP-1 secretion and intracellular Ca(2+) and cyclic AMP (cAMP) levels in a dose-dependent manner. Transfection of NCI-H716 cells with TGR5-specific small interference RNA inhibited AEE-SM-induced GLP-1 secretion and the increase in Ca(2+) and cAMP levels. Moreover, AEE-SM showed that the TGR5 agonist activity in CHO-K1 cells transiently transfected with TGR5. The results suggest that AEE-SM might be a candidate for a functional food to regulate glucose and energy homeostasis.

  8. Niveles de plomo y cadmio en agua marina y lapas (Patella vulgata L. de la Ría de Vigo

    Directory of Open Access Journals (Sweden)

    M. Pérez López

    2003-01-01

    Full Text Available El empleo de seres vivos para monitorizar la contaminación por metales pesados en los ecosistemas acuáticos es de extremo interés en el campo de la ecotoxicología. En el presente estudio se han recogido muestras de agua marina y de lapas (Patella vulgata L. de distintos puntos de la Ría de Vigo, con la intención de determinar en ellos los niveles de plomo y cadmio, por medio de una técnica de voltamperometría. Los resultados obtenidos mostraron una relación estrecha entre los niveles hallados en las muestras de agua, y los encontrados en los moluscos, sobre todo los correspondientes a los tejidos blandos de lapas, relacionándose directamente a un incremento en la contaminación medioambiental. La concentración fue más elevada en los tejidos blandos que en la valva, especialmente en el caso del Cd (incremento aproximado de 93.6 veces. Los niveles de contaminación metálica fueron mayores en los animales recogidos en la zona interior de la Ría, salvo en el caso del cadmio presente en los tejidos blandos, donde la concentración máxima (5.62 ppm correspondió con muestras próximas al mar abierto

  9. Actividad antibacteriana de extractos etanólicos de macroalgas marinas de la costa central del Perú

    Directory of Open Access Journals (Sweden)

    Claudio Magallanes

    2013-06-01

    Full Text Available Se evaluó la actividad antibacteriana de extractos etanólicos de 12 especies de macroalgas marinas. Los extractos fueron obtenidos de acuerdo al protocolo modificado de Vlachos et al. (1996. Cada extracto se enfrentó contra 5 cepas bacterianas de origen clínico y 6 no clínico perteneciente a los géneros Staphylococcus, Enterococcus, Pseudomonas, Escherichia, Salmonella, Aeromonas y Vibrio. De 12 especies de algas ensayadas solamente 5 (Grateloupia doryphora, Ahnfeltiopsis durvillaei, Prionitis decipiens, Petalonia fascia y Bryopsis plumosa presentaron algún efecto antibacteriano. Asimismo, de 11 cepas bacterianas probadas solamente las cepas clínicas Staphylococcus aureus ATCC 25923 y Enterococcus faecalis ATCC 29212 y la cepa no clínica Staphylococcus aureus ATCC 6633 fueron sensibles a los extractos algales. El extracto etanólico de B. plumosa presentó el mayor efecto antibacteriano contra las dos cepas de S. aureus, manifestándose en el mayor tamaño de sus halos de inhibición, mientras que el extracto de P. fascia mostró mayor espectro antibacteriano, inhibiendo a las 3 cepas mencionadas.

  10. Experimental weed control of Najas marina ssp. intermedia and Elodea nuttallii in lakes using biodegradable jute matting

    Directory of Open Access Journals (Sweden)

    Markus A. Hoffmann

    2013-10-01

    Full Text Available The use of jute matting in managing the invasive aquatic macrophyte species Elodea nuttallii (Planch. H. St. John and Najas marina ssp. intermedia (Wolfg. ex Gorski Casper (Najas intermedia was studied in laboratory experiments and field trials. Four German lakes with predominant population of Najas intermedia or Elodea nuttalli were chosen for the experiment and areas between 150 and 300 m² were covered with jute textile. The effect of the matting on the growth of invasive and non-invasive macrophytes was determined through comparison with control transects. Biodegradable jute matting successfully suppressed the invasive macrophyte Najas intermedia and significantly reduced the growth of Elodea nuttalli in lakes. The results indicate that the capability of the matting to inhibit the growth of Elodea nuttallii and Najas intermedia depends on the mesh size of the jute weaving and that environmental conditions can affect its efficiency. Various indigenous species like Charales or Potamogeton pusillus L. were able to grow through the jute fabric and populate the treated areas. Until the end of the vegetation period, none of the invasive species were able to penetrate the covering and establish a stable population; in fact, in the subsequent year the jute matting affected only the spread of Najas intermedia. Jute matting proved to be an easy-to-use and cheap method to control the growth of Elodea nuttallii and Najas intermedia.

  11. Establishing a Baseline for Regional Scale Monitoring of Eelgrass (Zostera marina Habitat on the Lower Alaska Peninsula

    Directory of Open Access Journals (Sweden)

    Kyle R. Hogrefe

    2014-12-01

    Full Text Available Seagrass meadows, one of the world’s most widespread and productive ecosystems, provide a wide range of services with real economic value. Worldwide declines in the distribution and abundance of seagrasses and increased threats to coastal ecosystems from climate change have prompted a need to acquire baseline data for monitoring and protecting these important habitats. We assessed the distribution and abundance of eelgrass (Zostera marina along nearly 1200 km of shoreline on the lower Alaska Peninsula, a region of expansive eelgrass meadows whose status and trends are poorly understood. We demonstrate the effectiveness of a multi-scale approach by using Landsat satellite imagery to map the total areal extent of eelgrass while integrating field survey data to improve map accuracy and describe the physical and biological condition of the meadows. Innovative use of proven methods and processing tools was used to address challenges inherent to remote sensing in high latitude, coastal environments. Eelgrass was estimated to cover ~31,000 ha, 91% of submerged aquatic vegetation on the lower Alaska Peninsula, nearly doubling the known spatial extent of eelgrass in the region. Mapping accuracy was 80%–90% for eelgrass distribution at locations containing adequate field survey data for error analysis.

  12. Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems.

    Science.gov (United States)

    Arrojado, Cátia; Pereira, Carla; Tomé, João P C; Faustino, Maria A F; Neves, Maria G P M S; Tomé, Augusto C; Cavaleiro, José A S; Cunha, Angela; Calado, Ricardo; Gomes, Newton C M; Almeida, Adelaide

    2011-10-01

    Aquaculture activities are increasing worldwide, stimulated by the progressive reduction of natural fish stocks in the oceans. However, these activities also suffer heavy production and financial losses resulting from fish infections caused by microbial pathogens, including multidrug resistant bacteria. Therefore, strategies to control fish infections are urgently needed, in order to make aquaculture industry more sustainable. Antimicrobial photodynamic therapy (aPDT) has emerged as an alternative to treat diseases and prevent the development of antibiotic resistance by pathogenic bacteria. The aim of this work was to evaluate the applicability of aPDT to inactivate pathogenic fish bacteria. To reach this objective a cationic porphyrin Tri-Py(+)-Me-PF was tested against nine pathogenic bacteria isolated from a semi-intensive aquaculture system and against the cultivable bacteria of the aquaculture system. The ecological impact of aPDT in the aquatic environment was also tested on the natural bacterial community, using the overall bacterial community structure and the cultivable bacteria as indicators. Photodynamic inactivation of bacterial isolates and of cultivable bacteria was assessed counting the number of colonies. The impact of aPDT in the overall bacterial community structure of the aquaculture water was evaluated by denaturing gel gradient electrophoresis (DGGE). The results showed that, in the presence of Tri-Py(+)-Me-PF, the growth of bacterial isolates was inhibited, resulting in a decrease of ≈7-8 log after 60-270 min of irradiation. Cultivable bacteria were also considerably affected, showing decreases up to the detection limit (≈2 log decrease on cell survival), but the inactivation rate varied significantly with the sampling period. The DGGE fingerprint analyses revealed changes in the bacterial community structure caused by the combination of aPDT and light. The results indicate that aPDT can be regarded as a new approach to control fish

  13. Cultivation of oyster mushrooms on cassava waste

    NARCIS (Netherlands)

    Sonnenberg, A.S.M.; Baars, J.J.P.; Obodai, M.; Asagbra, A.

    2015-01-01

    Cassava is a major food crop for approximately 700 million people, especially in African countries. A large quantity of waste is produced during processing of cassava, mainly consisting of tuber peels. Although previous research has shown that these peels can be an ingredient for substrate to cultiv

  14. Hatchery cultivation of the common cockle (

    NARCIS (Netherlands)

    Pronker, A.E.; Peene, F.; Donner, S.; Wijnhoven, S.; Geijsen, P.; Bossier, P.; Nevejan, N.M.

    2015-01-01

    This study describes for the first time the cultivation of Cerastoderma edule on a commercial scale. A protocol to grow F2 generation cockles was developed, which led to fine-tuning experiments for broodstock conditioning and spat growth.Broodstock animals were conditioned with die

  15. Isolation and cultivation of Walsby's square archaeon

    NARCIS (Netherlands)

    Bolhuis, H; Poele, EMT; Rodriguez-Valera, F

    2004-01-01

    In 1980, A. E. Walsby described a square halophilic archaeon. This archaeon is of specific interest because of its unique shape and its abundance in hypersaline ecosystems, which suggests an important ecophysiological role. Ever since its discovery, the isolation and cultivation of 'Walsby's square

  16. [Cultivation of pathogenic free-living amoebae].

    Science.gov (United States)

    Peng, Heng; Zhu, Huai-Min

    2009-08-01

    The isolation and culture of pathogenic free-living amoebae are useful in the diagnosis and research. This review focuses on the methods of isolation and cultivation of pathogenic free-living amoebae, including sample treatment, culture conditions, passage culture, pathogen detection, and maintenance.

  17. Cultivating Technological Innovation in the Mind

    Directory of Open Access Journals (Sweden)

    PROF ANYATA BENEDICT U.(Ph.D

    2015-11-01

    Full Text Available Cultivating innovation in the mind is imperative to successfully move technology to the next level. Technology is growing rapidly in developed countries and has almost reached its peak. Developing countries and continents like Africa on the other hand are now seen as a breeding ground to explore in technological innovation. Researchers and entrepreneurs are shifting base to Africa where they can achieve maximum profit resulting from under development of the continent. Reefs, city and web are used to explain the best way to cultivate innovation. The city and web are such engines of new innovation because both environments are powerfully suited for the creation, diffusion and adoption of good ideas. The seven keys of cultivating innovation include tropical humidity, illiteracy, poor power surge of electronic use for research, good concept of the liquid networks, slow hunches, serendipity, acceptance of error in cultivating innovation, Exaptation, coffee breaks, application of programming interface and the use of quadrant as a tool. These keys are recommended to be put to use by every individual who has the mindset of driving technological innovation to the next level.

  18. Cultivation Theory and Research: A Conceptual Critique.

    Science.gov (United States)

    Potter, W. James

    1993-01-01

    Presents a critical analysis of how cultivation (long-term formation of perceptions and beliefs about the world as a result of exposure to media) has been conceptualized in theory and research. Analyses the construct of television exposure. Suggests revisions for conceptualizing the existing theory and extending it. (RS)

  19. Brotes germinados y bacterias

    OpenAIRE

    García Olmedo, Francisco

    2011-01-01

    Ante la confusión y el revuelo asociados al último incidente causado por una cepa de la bacteria Escherichia coli (E. coli) en Alemania, tal vez no esté de más esta carta para recordar y actualizar escritos míos anteriores aparecidos en Revista de Libros sobre los riesgos alimentarios en general y sobre los peligros de dicho microorganismo en particular. 1 . Aunque es cierto que la proporción de cepas peligrosas de E. coli es quizás inferior a la de delincuentes entre los humanos, exi...

  20. Deforestation and cultivation mobilize mercury from topsoil.

    Science.gov (United States)

    Gamby, Rebecca L; Hammerschmidt, Chad R; Costello, David M; Lamborg, Carl H; Runkle, James R

    2015-11-01

    Terrestrial biomass and soils are a primary global reservoir of mercury (Hg) derived from natural and anthropogenic sources; however, relatively little is known about the fate and stability of Hg in the surface soil reservoir and its susceptibility to change as a result of deforestation and cultivation. In southwest Ohio, we measured Hg concentrations in soils of deciduous old- and new-growth forests, as well as fallow grassland and agricultural soils that had once been forested to examine how, over decadal to century time scales, man-made deforestation and cultivation influence Hg mobility from temperate surface soils. Mercury concentrations in surficial soils were significantly greater in the old-growth than new-growth forest, and both forest soils had greater Hg concentrations than cultivated and fallow fields. Differences in Hg:lead ratios between old-growth forest and agricultural topsoils suggest that about half of the Hg lost from deforested and cultivated Ohio soils may have been volatilized and the other half eroded. The estimated mobilization potential of Hg as a result of deforestation was 4.1 mg m(-2), which was proportional to mobilization potentials measured at multiple locations in the Amazon relative to concentrations in forested surface soils. Based on this relationship and an estimate of the global average of Hg concentrations in forested soils, we approximate that about 550 M mol of Hg has been mobilized globally from soil as a result of deforestation during the past two centuries. This estimate is comparable to, if not greater than, the amount of anthropogenic Hg hypothesized by others to have been sequestered by the soil reservoir since Industrialization. Our results suggest that deforestation and soil cultivation are significant anthropogenic processes that exacerbate Hg mobilization from soil and its cycling in the environment.

  1. Antibacterial and bioiflm inhibitory activities of bacteria associated with polychaetes

    Institute of Scientific and Technical Information of China (English)

    Sathianeson Satheesh; Nadarajan Viju

    2015-01-01

    Objective:To study the antibacterial and antibiofilm activities expressed by epibiotic bacteria associated with the polychaetes Platynereis dumerilii and Syllis sp. Methods:A total of 32 cultivable bacterial strains were isolated from the two polychaete species. The crude extracts were tested for antibacterial activity and biofilm inhibitory activity against pathogenic and biofilm-forming bacterial strains. Extracts of the strains which showed strong activity were analyzed by thin-layer chromatography (TLC) and the bacterial strains were identified based on 16S rRNA gene sequencing. Results:Extracts of 13 bacterial strains showed inhibitory activity against pathogenic and biofilm-forming bacteria. The crude extracts also affected the synthesis of extracellular polymeric substances and cell surface hydrophobicity of the Alteromonas sp. isolated from marine biofilm. The adhesion of Alteromonas sp. on glass surface showed significant variation between surface-associated bacterial crude extract treatment and control groups. Among the 13 bacteria, two strains PA8 and PA19 were further analyzed for bioactive fractions. Thin-layer chromatography indicated the presence of a single active fraction in the crude extract of both the bacterial strains. The epibiotic bacterial strains P8 and P19 were identified as Exiguobacterium sp. and Actinobacterium sp. respectively based on 16S rRNA gene sequencing. Conclusions:The present study indicates that bacteria associated with marine invertebrates inhabiting the coastal waters could be used as a potential source for the isolation of bioactive metabolites.

  2. Antibacterial and biofilm inhibitory activities of bacteria associated with polychaetes

    Directory of Open Access Journals (Sweden)

    Chellamnadar Vaikundavasagom Sunjaiy Shankar

    2015-06-01

    Full Text Available Objective: To study the antibacterial and antibiofilm activities expressed by epibiotic bacteria associated with the polychaetes Platynereis dumerilii and Syllis sp. Methods: A total of 32 cultivable bacterial strains were isolated from the two polychaete species. The crude extracts were tested for antibacterial activity and biofilm inhibitory activity against pathogenic and biofilm-forming bacterial strains. Extracts of the strains which showed strong activity were analyzed by thin-layer chromatography (TLC and the bacterial strains were identified based on 16S rRNA gene sequencing. Results: Extracts of 13 bacterial strains showed inhibitory activity against pathogenic and biofilm-forming bacteria. The crude extracts also affected the synthesis of extracellular polymeric substances and cell surface hydrophobicity of the Alteromonas sp. isolated from marine biofilm. The adhesion of Alteromonas sp. on glass surface showed significant variation between surface-associated bacterial crude extract treatment and control groups. Among the 13 bacteria, two strains PA8 and PA19 were further analyzed for bioactive fractions. Thinlayer chromatography indicated the presence of a single active fraction in the crude extract of both the bacterial strains. The epibiotic bacterial strains P8 and P19 were identified as Exiguobacterium sp. and Actinobacterium sp. respectively based on 16S rRNA gene sequencing. Conclusions: The present study indicates that bacteria associated with marine invertebrates inhabiting the coastal waters could be used as a potential source for the isolation of bioactive metabolites.

  3. Beneficial bacteria inhibit cachexia.

    Science.gov (United States)

    Varian, Bernard J; Goureshetti, Sravya; Poutahidis, Theofilos; Lakritz, Jessica R; Levkovich, Tatiana; Kwok, Caitlin; Teliousis, Konstantinos; Ibrahim, Yassin M; Mirabal, Sheyla; Erdman, Susan E

    2016-03-15

    Muscle wasting, known as cachexia, is a debilitating condition associated with chronic inflammation such as during cancer. Beneficial microbes have been shown to optimize systemic inflammatory tone during good health; however, interactions between microbes and host immunity in the context of cachexia are incompletely understood. Here we use mouse models to test roles for bacteria in muscle wasting syndromes. We find that feeding of a human commensal microbe, Lactobacillus reuteri, to mice is sufficient to lower systemic indices of inflammation and inhibit cachexia. Further, the microbial muscle-building phenomenon extends to normal aging as wild type animals exhibited increased growth hormone levels and up-regulation of transcription factor Forkhead Box N1 [FoxN1] associated with thymus gland retention and longevity. Interestingly, mice with a defective FoxN1 gene (athymic nude) fail to inhibit sarcopenia after L. reuteri therapy, indicating a FoxN1-mediated mechanism. In conclusion, symbiotic bacteria may serve to stimulate FoxN1 and thymic functions that regulate inflammation, offering possible alternatives for cachexia prevention and novel insights into roles for microbiota in mammalian ontogeny and phylogeny.

  4. Chemical communication in bacteria

    Science.gov (United States)

    Suravajhala, Srinivasa Sandeep; Saini, Deepak; Nott, Prabhu

    Luminescence in Vibrio fischeri is a model for quorum-sensing-gene-regulation in bacteria. We study luminescence response of V. fischeri to both internal and external cues at the single cell and population level. Experiments with ES114, a wild-type strain, and ainS mutant show that luminescence induction in cultures is not always proportional to cell-density and there is always a basal level of luminescence. At any given concentration of the exogenously added signals, C6-HSL and C8-HSL, luminescence per cell reaches a maximum during the exponential phase and decreases thereafter. We hypothesize that (1) C6-HSL production and LuxR activity are not proportional to cell-density, and (2) there is a shift in equilibrium from C6-HSL to C8-HSL during the later stages of growth of the culture. RT-PCR analysis of luxI and luxR shows that the expression of these genes is maximum corresponding to the highest level of luminescence. The shift in equilibrium is shown by studying competitive binding of C6-HSL and C8-HSL to LuxR. We argue that luminescence is a unicellular behaviour, and an intensive property like per cell luminescence is more important than gross luminescence of the population in understanding response of bacteria to chemical signalling. Funding from the Department of Science and Technology, India is acknowledged.

  5. Nitrogen-fixing bacteria in Eucalyptus globulus plantations.

    Science.gov (United States)

    da Silva, Marliane de Cássia Soares; Paula, Thiago de Almeida; Moreira, Bruno Coutinho; Carolino, Manuela; Cruz, Cristina; Bazzolli, Denise Mara Soares; Silva, Cynthia Canedo; Kasuya, Maria Catarina Megumi

    2014-01-01

    Eucalypt cultivation is an important economic activity worldwide. In Portugal, Eucalyptus globulus plantations account for one-third of the total forested area. The nutritional requirements of this crop have been well studied, and nitrogen (N) is one of the most important elements required for vegetal growth. N dynamics in soils are influenced by microorganisms, such as diazotrophic bacteria (DB) that are responsible for biological nitrogen fixation (BNF), so the aim of this study was to evaluate and identity the main groups of DB in E. globulus plantations. Samples of soil and root systems were collected in winter and summer from three different Portuguese regions (Penafiel, Gavião and Odemira). We observed that DB communities were affected by season, N fertilization and moisture. Furthermore Bradyrhizobium and Burkholderia were the most prevalent genera in these three regions. This is the first study describing the dynamic of these bacteria in E. globulus plantations, and these data will likely contribute to a better understanding of the nutritional requirements of eucalypt cultivation and associated organic matter turnover.

  6. Nitrogen-fixing bacteria in Eucalyptus globulus plantations.

    Directory of Open Access Journals (Sweden)

    Marliane de Cássia Soares da Silva

    Full Text Available Eucalypt cultivation is an important economic activity worldwide. In Portugal, Eucalyptus globulus plantations account for one-third of the total forested area. The nutritional requirements of this crop have been well studied, and nitrogen (N is one of the most important elements required for vegetal growth. N dynamics in soils are influenced by microorganisms, such as diazotrophic bacteria (DB that are responsible for biological nitrogen fixation (BNF, so the aim of this study was to evaluate and identity the main groups of DB in E. globulus plantations. Samples of soil and root systems were collected in winter and summer from three different Portuguese regions (Penafiel, Gavião and Odemira. We observed that DB communities were affected by season, N fertilization and moisture. Furthermore Bradyrhizobium and Burkholderia were the most prevalent genera in these three regions. This is the first study describing the dynamic of these bacteria in E. globulus plantations, and these data will likely contribute to a better understanding of the nutritional requirements of eucalypt cultivation and associated organic matter turnover.

  7. Fungi and bacteria involved in desert varnish formation

    Science.gov (United States)

    Taylor-George, S.; Palmer, F.; Staley, J. T.; Curtiss, B.; Adams, J. B.; Borns, D. J.

    1983-01-01

    Desert varnish is a coating of ferromanganese oxides and clays that develops on rock surfaces in arid to semi-arid regions. Active respiration but not photosynthesis was detected on varnished rock surfaces from the Sonoran Desert. Light microscopy, scanning electron microscopy (SEM) and transmission electron microscopy (TEM) observations, and cultivation experiments indicate that both fungi, primarily dematiaceous hyphomycetes, and bacteria are found on and within desert varnish coatings from the arid regions studied. Some fungi grow as microcolonial fungi (MCF) on rocks, and microscopic observations suggest MCF become incorporated in the varnish coating. SEM-EDAX (energy dispersive X-ray systems) analyses indicate the MCF contain 3 of the characteristic elements of varnish: iron, aluminum, and silicon. In some locations, MCF are also enriched in manganese relative to the rock substratum. Furthermore, some of the dematiaceous hyphomycetes that have been cultivated are able to oxidize manganese under laboratory conditions. It is possible that manganese-oxidizing bacteria, which are found in varnish, also play an important role in varnish formation.

  8. Nitrogen-Fixing Bacteria in Eucalyptus globulus Plantations

    Science.gov (United States)

    da Silva, Marliane de Cássia Soares; Paula, Thiago de Almeida; Moreira, Bruno Coutinho; Carolino, Manuela; Cruz, Cristina; Bazzolli, Denise Mara Soares; Silva, Cynthia Canedo; Kasuya, Maria Catarina Megumi

    2014-01-01

    Eucalypt cultivation is an important economic activity worldwide. In Portugal, Eucalyptus globulus plantations account for one-third of the total forested area. The nutritional requirements of this crop have been well studied, and nitrogen (N) is one of the most important elements required for vegetal growth. N dynamics in soils are influenced by microorganisms, such as diazotrophic bacteria (DB) that are responsible for biological nitrogen fixation (BNF), so the aim of this study was to evaluate and identity the main groups of DB in E. globulus plantations. Samples of soil and root systems were collected in winter and summer from three different Portuguese regions (Penafiel, Gavião and Odemira). We observed that DB communities were affected by season, N fertilization and moisture. Furthermore Bradyrhizobium and Burkholderia were the most prevalent genera in these three regions. This is the first study describing the dynamic of these bacteria in E. globulus plantations, and these data will likely contribute to a better understanding of the nutritional requirements of eucalypt cultivation and associated organic matter turnover. PMID:25340502

  9. Isolation and Characterisation of Diazotrophic Bacteria from Rhizosphere of Different Rice Cultivars of South Assam, India

    Directory of Open Access Journals (Sweden)

    FOLGUNI LASKAR

    2013-04-01

    Full Text Available Free living heterotrophic bacteria were isolated from the rhizosphere of 10 local and cultivated varieties of rice grown in Karimganj district of South Assam. Among the 25 isolates, 11 isolates withplant growth promoting activity were identified based on phenotypic and 16S rDNA sequence analysis. The strains were identified as Shingomonasazotifigens, Pseudomonas putida, Stenotrophomonasmaltophila,Acinetobacterradioresistance, Alkaligenesfaecalis, Enterobactercloaceae subsp. dissolvens, Pantoeaagglomerans, Klebsiellapneumoneae, Achromobacterxyloxidans, Herbispirillumrubrisubalbicans and Herbispirillum sp . The efficient strains are isolated from the local varieties of rice plant. The isolate KR-23 ( Sphingomonasazotifigens was a novel bacteria reported for the first time as nitrogen fixing bacteria from India. The nitrogen fixing ability along with IAA production, ACC deaminase activity and P-solubilisation by the bacteria has shown their potential for plant-growth-promoting rhizobacteria. KR-6( Stenotrophomonasmaltophila and KR-7( Herbispirillumrubrisubalbicans have been reported earlier as plant pathogensbut theyhave shown a high potential for nitrogen fixing and auxin producing activity in the present study

  10. Interactions between hyphosphere-associated bacteria and the fungus Cladosporium herbarum on aquatic leaf litter.

    Science.gov (United States)

    Baschien, Christiane; Rode, Georg; Böckelmann, Uta; Götz, Peter; Szewzyk, Ulrich

    2009-10-01

    We investigated microbial interactions of aquatic bacteria associated with hyphae (the hyphosphere) of freshwater fungi on leaf litter. Bacteria were isolated directly from the hyphae of fungi from sedimented leaves of a small stream in the National Park "Lower Oder," Germany. To investigate interactions, bacteria and fungi were pairwise co-cultivated on leaf-extract medium and in microcosms loaded with leaves. The performance of fungi and bacteria was monitored by measuring growth, enzyme production, and respiration of mono- and co-cultures. Growth inhibition of the fungus Cladosporium herbarum by Ralstonia pickettii was detected on leaf extract agar plates. In microcosms, the presence of Chryseobacterium sp. lowered the exocellulase, endocellulase, and cellobiase activity of the fungus. Additionally, the conversion of leaf material into microbial biomass was retarded in co-cultures. The respiration of the fungus was uninfluenced by the presence of the bacterium.

  11. The Origin of Flooded Rice Cultivation

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Rice cultivation has long been considered to have originated from seeding of annual types of wild ricesomewhere in subtropics, tropics or in the Yangtze River basin. That idea, however, contains a fatally weak point, when we consider the tremendous difficulty for primitive human to seed any cereal crop in the warm and humid climate, where weed thrives all year round. Instead of the accepted theory, we have to see a reality that vegetative propagation of edible plants is a dominant form of agriculture in such regions. The possibility is discussed that Job's tears and rice, two cereal crops unique to the region, might have been developed via vegetative propagation to obtain materials for medicine or herb tea in backyard gardens prior to cereal production. This idea is supported by the fact that rice in temperate regions is still perennial in its growth habit and that such backyard gardens with transplanted taro can still be seen from Yunnan Province of China to Laos. Thanks to detailed survey of wild rice throughout China for 1970-1980, it is now confirmed that a set of clones of wild rice exist in shallow swamps in Jiangxi Province, an area with severe winter cold. In early summer ancient farmers may have divided the sprouting buds and spread them by transplanting into flooded shallow marsh. Such way of propagation might have faster improved less productive rice through a better genetic potential for response to human interference than quick fixation in seed propagation, because vegetative parts are heterogeneous. Obviously, such a primitive manner of rice cultivation did include the essential parts of rice farming, i.e., nursery bed, transplanting in flooded field of shallow marsh like. Transfer from the primitive nursery to true nursery by seed may have later allowed rice cultivation to be extended to northern regions. In thus devised flooded cultivation there were a series of unique advantages, i.e.; continuous cropping of rice in a same plot, no soil erosion

  12. [Studies on rapid detection of food-borne pathogenic bacteria by nucleic acid testing and related technology].

    Science.gov (United States)

    Cao, Wei; Wang, Mingzhong; Wang, Xiaoying; Liu, Xiumei

    2008-03-01

    The traditional methods of bacteria isolation, cultivation and identification are time-consuming, which can't meet the needs of the control and prevention of food-borne diseases. Recently, various kinds of rapid methods for food-borne pathogenic bacteria detection have emerged with the prompt development of nucleic acid testing technology. The application studies on polymerase chain reaction and the techniques derived from it, nucleic acid isothermal amplification, oligonucleotide microarray, immunomagnetic separation and DNA biosensing on food-borne pathogenic bacteria including Salmonella, Staphylococcus aureus and Enterohemorrhagic Escherchia coli, etc. were reviewed.

  13. Anaerobic bacteria in the gut of terrestrial isopod Crustacean Porcellio scaber.

    Science.gov (United States)

    Kostanjsek, R; Lapanje, A; Rupnik, M; Strus, J; Drobne, D; Avgustin, G

    2004-01-01

    Anaerobic bacteria from Porcellio scaber hindgut were identified and, subsequently, isolated using molecular approach. Phylogenetic affiliation of bacteria associated with the hindgut wall was determined by analysis of bacterial 16S rRNA gene sequences which were retrieved directly from washed hindguts of P. scaber. Sequences from bacteria related to obligate anaerobic bacteria from genera Bacteroides and Enterococcus were retrieved, as well as sequences from 'A1 subcluster' of the wall-less mollicutes. Bacteria from the genus Desulfotomaculum were isolated from gut wall and cultivated under anaerobic conditions. In contrast to previous reports which suggested the absence of anaerobic bacteria in the isopod digestive system due to short retention time of the food in the tube-like hindgut, frequent renewal of the gut cuticle during the moulting process, and unsuccessful attempts to isolate anaerobic bacteria from this environment our results indicate the presence of resident anaerobic bacteria in the gut of P. scaber, in spite of apparently unsuitable, i.e. predominantly oxic, conditions.

  14. Influence of Chicken Manure Fertilization on Antibiotic-Resistant Bacteria in Soil and the Endophytic Bacteria of Pakchoi.

    Science.gov (United States)

    Yang, Qingxiang; Zhang, Hao; Guo, Yuhui; Tian, Tiantian

    2016-01-01

    Animal manure is commonly used as fertilizer for agricultural crops worldwide, even though it is believed to contribute to the spread of antibiotic resistance from animal intestines to the soil environment. However, it is unclear whether and how there is any impact of manure fertilization on populations and community structure of antibiotic-resistant endophytic bacteria (AREB) in plant tissues. To investigate the effect of manure and organic fertilizer on endophytic bacterial communities, pot experiments were performed with pakchoi grown with the following treatments: (1) non-treated; (2) chicken manure-treated and (3) organic fertilizer-treated. Manure or organic fertilizer significantly increased the abundances of total cultivable endophytic bacteria (TCEB) and AREB in pakchoi, and the effect of chicken manure was greater than that of organic fertilizer. Further, 16S rDNA sequencing and the phylogenetic analysis indicated that chicken manure or organic fertilizer application increased the populations of multiple antibiotic-resistant bacteria (MARB) in soil and multiple antibiotic-resistant endophytic bacteria (MAREB) in pakchoi. The identical multiple antibiotic-resistant bacterial populations detected in chicken manure, manure- or organic fertilizer-amended soil and the vegetable endophytic system were Brevundimonas diminuta, Brachybacterium sp. and Bordetella sp., suggesting that MARB from manure could enter and colonize the vegetable tissues through manure fertilization. The fact that some human pathogens with multiple antibiotic resistance were detected in harvested vegetables after growing in manure-amended soil demonstrated a potential threat to human health.

  15. Acute toxicity of Chattonella Marina on Artemia Sinica%海洋卡盾藻对卤虫的急性毒性效应

    Institute of Scientific and Technical Information of China (English)

    徐艳红; 江涛; 沈萍萍; 王锐; 吴霓; 江天久

    2012-01-01

    研究了海洋卡盾藻在不同生长阶段和不同密度下对卤虫的急性毒性效应.结果表明,海洋卡盾藻的含藻培养液和除藻过滤液均对卤虫有致死作用,且前者毒性大于后者.对数生长初期的海洋卡盾藻含藻培养液的毒性作用最强,卤虫暴露在3.0×104 cells/mL藻液48h后,死亡率达到83%;对数生长后期海洋卡盾藻含藻培养液也具有较强的毒性,48 h卤虫死亡率为73%;衰亡期含藻培养液毒性最弱,48 h卤虫死亡率为33%.海洋卡盾藻含藻培养液和除藻过滤液(对数生长期,10 d)的浓度对数与卤虫的死亡机率单位呈线性关系,含藻培养液对卤虫24h半致死浓度(LD50)为1.92×104cells/mL,而除藻过滤液对卤虫的24 h LD50为3.34×104cells/mL.卤虫在海洋卡盾藻含藻培养液中的暴露时间(48 h内)与死亡率呈线性相关关系,在藻密度为3.75×104cells/mL时,海洋卡盾藻含藻培养液对卤虫的半致死时间(LT50)为17.3 h.%The acute toxicity of Chattonella marina at different growth phases and concentrations on Artemia Sinica was investigated in the present study. The results showed that the maximum toxicity of C. marina on A. salina appeared at the early stage of logarithmic phase, and the death rate of A. sinica reached 83% after 48 h when it was exposed to the algae cell suspension at density of 3. 0 x 104 cells/ mL. The lowest toxicity of C. marina on A. sinica appeared in the decline phase with death rate of 33% . Interestingly, the filtered cell-free cultures of Chattonella marina were also toxic to A. sinica, but less toxic than the cell-suspended cultures. The probit mortality of A. salina was closely correlated to the log dose of cell-suspended and cell-free culture of C. marina (10 d). The 24 - h LD50 of the cell suspension and cell-free culture of C. marina was 1. 92 x 10 and 3. 34 x 10 cells/mL, respectively. The probit mortality of A. salina was also correlated with time and the LT50 of A. salina

  16. Immunomodulatory properties of probiotic bacteria

    DEFF Research Database (Denmark)

    Fink, Lisbeth Nielsen

    2007-01-01

    Certain lactic acid bacteria (LAB) are part of the commensal intestinal flora and considered beneficial for health, as they compete with pathogens for adhesion sites in the intestine and ferment otherwise indigestible compounds. Another important property of these so-called probiotic bacteria...... with bacteria, and the cytokine pattern induced by specific bacteria resembled the pattern induced in MoDC, except for TNF-alpha and IL-6, which were induced in response to different bacteria in blood DC/monocytes and monocyte-derived DC. Autologous NK cells produced IFN-gamma when cultured with blood DC......, monocytes and monocyte-derived DC and IL-12-inducing bacteria, whereas only DC induced IFN-gamma production in allogeneic T cells. In vitro-generated DC is a commonly used model of tissue DC, but they differ in certain aspects from intestinal DC, which are in direct contact with the intestinal microbiota...

  17. Cable Bacteria in Freshwater Sediments

    DEFF Research Database (Denmark)

    Risgaard-Petersen, Nils; Kristiansen, Michael; Frederiksen, Rasmus

    2015-01-01

    In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable...... bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures...... marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary...

  18. Identification of light-harvesting chlorophyll a/b-binding protein genes of Zostera marina L. and their expression under different environmental conditions

    Science.gov (United States)

    Kong, Fanna; Zhou, Yang; Sun, Peipei; Cao, Min; Li, Hong; Mao, Yunxiang

    2016-02-01

    Photosynthesis includes the collection of light and the transfer of solar energy using light-harvesting chlorophyll a/b-binding (LHC) proteins. In high plants, the LHC gene family includes LHCA and LHCB sub-families, which encode proteins constituting the light-harvesting complex of photosystems I and II. Zostera marina L. is a monocotyledonous angiosperm and inhabits submerged marine environments rather than land environments. We characterized the Lhca and Lhcb gene families of Z. marina from the expressed sequence tags (EST) database. In total, 13 unigenes were annotated as ZmLhc, 6 in Lhca family and 7 in ZmLhcb family. ZmLHCA and ZmLHCB contained the conservative LHC motifs and amino acid residues binding chlorophyll. The average similarity among mature ZmLHCA and ZmLHCB was 48.91% and 48.66%, respectively, which indicated a high degree of divergence within ZmLHChc gene family. The reconstructed phylogenetic tree showed that the tree topology and phylogenetic relationship were similar to those reported in other high plants, suggesting that the Lhc genes were highly conservative and the classification of ZmLhc genes was consistent with the evolutionary position of Z. marina. Real-time reverse transcription (RT) PCR analysis showed that different members of ZmLhca and ZmLhcb responded to a stress in different expression patterns. Salinity, temperature, light intensity and light quality may affect the expression of most ZmLhca and ZmLhcb genes. Inorganic carbon concentration and acidity had no obvious effect on ZmLhca and ZmLhcb gene expression, except for ZmLhca6.

  19. The role of O2 as an electron acceptor alternative to CO2 in photosynthesis of the common marine angiosperm Zostera marina L.

    Science.gov (United States)

    Buapet, Pimchanok; Björk, Mats

    2016-07-01

    This study investigates the role of O2 as an electron acceptor alternative to CO2 in photosynthesis of the common marine angiosperm Zostera marina L. Electron transport rates (ETRs) and non-photochemical quenching (NPQ) of Z. marina were measured under saturating irradiance in synthetic seawater containing 2.2 mM DIC and no DIC with different O2 levels (air-equilibrated levels, 3 % of air equilibrium and restored air-equilibrated levels). Lowering O2 did not affect ETR when DIC was provided, while it caused a decrease in ETR and an increase in NPQ in DIC-free media, indicating that O2 acted as an alternative electron acceptor under low DIC. The ETR and NPQ as a function of irradiance were subsequently assessed in synthetic seawater containing (1) 2.2 mM DIC, air-equilibrated O2; (2) saturating CO2, no O2; and (3) no DIC, air-equilibrated O2. These treatments were combined with glycolaldehyde pre-incubation. Glycolaldehyde caused a marked decrease in ETR in DIC-free medium, indicating significant electron flow supported by photorespiration. Combining glycolaldehyde with O2 depletion completely suppressed ETR suggesting the operation of the Mehler reaction, a possibility supported by the photosynthesis-dependent superoxide production. However, no notable effect of suppressing the Mehler reaction on NPQ was observed. It is concluded that during DIC-limiting conditions, such as those frequently occurring in the habitats of Z. marina, captured light energy exceeds what is utilised for the assimilation of available carbon, and photorespiration is a major alternative electron acceptor, while the contribution of the Mehler reaction is minor.

  20. 18O labeling of chlorophyll d in Acaryochloris marina reveals that chlorophyll a and molecular oxygen are precursors.

    Science.gov (United States)

    Schliep, Martin; Crossett, Ben; Willows, Robert D; Chen, Min

    2010-09-10

    The cyanobacterium Acaryochloris marina was cultured in the presence of either H(2)(18)O or (18)O(2), and the newly synthesized chlorophylls (Chl a and Chl d) were isolated using high performance liquid chromatography and analyzed by mass spectroscopy. In the presence of H(2)(18)O, newly synthesized Chl a and d, both incorporated up to four isotopic (18)O atoms. Time course H(2)(18)O labeling experiments showed incorporation of isotopic (18)O atoms originating from H(2)(18)O into Chl a, with over 90% of Chl a (18)O-labeled at 48 h. The incorporation of isotopic (18)O atoms into Chl d upon incubation in H(2)(18)O was slower compared with Chl a with approximately 50% (18)O-labeled Chl d at 115 h. The rapid turnover of newly synthesized Chl a suggested that Chl a is the direct biosynthetic precursor of Chl d. In the presence of (18)O(2) gas, one isotopic (18)O atom was incorporated into Chl a with approximately the same kinetic incorporation rate observed in the H(2)(18)O labeling experiment, reaching over 90% labeling intensity at 48 h. The incorporation of two isotopic (18)O atoms derived from molecular oxygen ((18)O(2)) was observed in the extracted Chl d, and the percentage of double isotopic (18)O-labeled Chl d increased in parallel with the decrease of non-isotopic-labeled Chl d. This clearly indicated that the oxygen atom in the C3(1)-formyl group of Chl d is derived from dioxygen via an oxygenase-type reaction mechanism.