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Sample records for bacterias marinas cultivables

  1. Actividades desarrolladas en la colección de bacterias marinas

    OpenAIRE

    Morales, M; Ortiz, E.; Villaverde, M.; V Caballero; Fonseca, E. L.; Núñez, R.

    2006-01-01

    En la Colección de Bacterias Marinas se conservan aislamientos procedentes de diferentes regiones del archipiélago cubano. Aquí se desarrollan actividades de investigación y servicios, entre las primeras se encuentran los estudios para la conservación de las cepas a mediano y largo plazo, la determinación taxonómica de sus componentes, la evaluación de bioactividades con aplicación en la industria médico-farmacéutica y en el saneamiento ambiental y la actualización de la base de datos asociad...

  2. Superóxido dismutasa y catalasa en bacterias bioluminiscentes marinas

    OpenAIRE

    González-Lama, Z.; Díez-del-Pino, A.

    2001-01-01

    Han sido estudiadas la catalasa y la superóxido dismutasa (SOD) de bacterias bioluminiscentes marinas. Hemos encontrado varios isoenzimas de catalasa y un isoenzima de superóxido dismutasa y se ha observado que a menor luminiscencia los niveles de catalasa son mayores. Una variante de Photobacterium phosphoreum var. K (cepa mutante que carece de bioluminiscencia) mostró los máximos niveles de catalasa. Hay dos tipos de catalasas en esta estirpe, una de pI 7,2 que es inhibida por el 3-amino, 1...

  3. Proteasas extracelulares producidas por bacterias marinas aisladas de aguas contaminadas con efluentes pesqueros

    OpenAIRE

    Tito Sánchez; Jorge León; Juan Woolcott; Katherine Arauco

    2013-01-01

    Un total de 26 cepas de bacterias marinas con actividad proteolítica fueron aisladas de agua de mar contaminadas con efluentes pesqueros; las mismas que se evaluaron en base al crecimiento y formación de halos de actividad en Agar Marino suplementados con caseína al 1%, pH 8,0 e incubados a 25 ºC por 72 h. Cinco cepas, seleccionadas por presentar los mejores halos de actividad fueron evaluadas a su vez por su crecimiento y producción de proteasas a diferentes concentraciones de NaCl, rangos d...

  4. Proteasas extracelulares producidas por bacterias marinas aisladas de aguas contaminadas con efluentes pesqueros

    Directory of Open Access Journals (Sweden)

    Tito Sánchez

    2013-06-01

    Full Text Available Un total de 26 cepas de bacterias marinas con actividad proteolítica fueron aisladas de agua de mar contaminadas con efluentes pesqueros; las mismas que se evaluaron en base al crecimiento y formación de halos de actividad en Agar Marino suplementados con caseína al 1%, pH 8,0 e incubados a 25 ºC por 72 h. Cinco cepas, seleccionadas por presentar los mejores halos de actividad fueron evaluadas a su vez por su crecimiento y producción de proteasas a diferentes concentraciones de NaCl, rangos de temperatura y pH; siendo consideradas finalmente como bacterias halotolerantes, psicrotróficas y alcalófilas moderadas. Estas cepas también fueron evaluadas por su actividad proteolítica específica sobre la caseína, siendo la cepa CM48 (Pseudomonas sp. la que presentó la mejor actividad específica (17,38 U/mg a las 72 horas, y seguidas por las cepas CM45 (Alcaligenes sp. (12,09 U/mg y tres cepas de Aeromonas sp. (CM43, CM44 y CM46 con valores de 12,02; 10,07 y 10,10 U/mg respectivamente.

  5. Bacterias marinas productoras de compuestos antibacterianos aisladas a partir de invertebrados intermareales Marine bacteria producing antibacterial compounds Isolated from inter-tidal invertebrates

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    Jorge León

    2010-06-01

    Full Text Available Se realizó actividades prospectivas de muestreo de invertebrados intermareales en la Bahía de Ancón (Lima - Perú con el objetivo de seleccionar bacterias marinas productoras de sustancias antimicrobianas. El estudio comprendió el aislamiento de bacterias en agar marino, pruebas de susceptibilidad antimicrobiana in vitro y observaciones de microscopía electrónica. Se reporta el aislamiento, caracterización fenotípica y propiedades antimicrobianas de diez cepas de bacterias marinas que incluyen a los géneros Vibrio, Pseudomonas y Flavobacterium y del orden Actinomycetal que inhiben a patógenos de humanos. Los resultados indicarían que los invertebrados marinos serían fuentes de bacterias productoras de sustancias antibióticas.Prospective sampling activities of intertidal invertebrates in the Ancon Bay (Lima, Peru were done in order to select marine bacteria producing antimicrobial substances. The study included the isolation of bacteria in marine agar, in vitro antimicrobial susceptibility testing and electronic microscopic observations. We report the isolation, phenotypical characterization and antimicrobial properties of 10 strains of marine bacteria including the genus Vibrio, Pseudomonas, and Flavobacterium, and the order Actinomycetae that inhibit human pathogens. The results indicate that the marine invertebrates would be sources of bacteria producing antibiotic substances.

  6. Rhizosphere of Avicennia marina (Forsk.) Vierh. as a landmark for polythene degrading bacteria.

    Science.gov (United States)

    Shahnawaz, Mohd; Sangale, Manisha K; Ade, Avinash B

    2016-07-01

    Due to high durability, cheap cost, and ease of manufacture, 311 million tons of plastic-based products are manufactured around the globe per annum. The slow/least rate of plastic degradation leads to generation of million tons of plastic waste per annum, which is of great environmental concern. Of the total plastic waste generated, polythene shared about 64 %. Various methods are available in the literature to tackle with the plastic waste, and biodegradation is considered as the most accepted, eco-friendly, and cost-effective method of polythene waste disposal. In the present study, an attempt has been made to isolate, screen, and characterize the most efficient polythene degrading bacteria by using rhizosphere soil of Avicennia marina as a landmark. From 12 localities along the west coast of India, a total of 123 bacterial isolates were recorded. Maximum percent weight loss (% WL; 21.87 ± 6.37 %) was recorded with VASB14 at pH 3.5 after 2 months of shaking at room temperature. Maximum percent weight gain (13.87 ± 3.6 %) was reported with MANGB5 at pH 7. Maximum percent loss in tensile strength (% loss in TS; 87.50 ± 4.8 %) was documented with VASB1 at pH 9.5. The results based on the % loss in TS were only reproducible. Further, the level of degradation was confirmed by scanning electron microscopic (SEM) and Fourier transform infrared spectroscopy (FTIR) analysis. In SEM analysis, scions/crakes were found on the surface of the degraded polythene, and mass of bacterial cell was also recorded on the weight-gained polythene strips. Maximum reduction in carbonyl index (4.14 %) was recorded in untreated polythene strip with Lysinibacillus fusiformis strain VASB14/WL. Based on 16S ribosomal RNA (rRNA) gene sequence homology, the most efficient polythene degrading bacteria were identified as L. fusiformis strainVASB14/WL and Bacillus cereus strain VASB1/TS. PMID:27072028

  7. Presencia de bacterias asociadas a nieve marina en arrecifes influenciados por escorrentía continental del Caribe colombiano: primer acercamiento

    OpenAIRE

    Hernán Alejandro Henao-Castro; Elvira M. Alvarado Ch; Laura C. Rodríguez; Johanna Santamaría

    2015-01-01

    Parte del deterioro de los arrecifes de coral se atribuye al efecto del aporte de agua dulce cargada de nutrientes y sedimentos finos. Estas condiciones favorecen la formación de nieve marina lodosa que transporta gran carga de bacterias que pueden ser patógenos de corales. Por lo anterior, se estudió la presencia de bacterias asociadas a nieve marina lodosa en una zona arrecifal del Caribe colombiano en un gradiente de distancia a la desembocadura del canal del Dique (Cartagena). Por medio d...

  8. Cultivable bacteria isolated from apple trees cultivated under different crop systems: Diversity and antagonistic activity against Colletotrichum gloeosporioides

    OpenAIRE

    dos Passos, João Frederico M.; Pedro B. da Costa; Costa, Murilo D.; Zaffari, Gilmar R.; Gilberto Nava; José Itamar Boneti; de Oliveira, Andréia Mara R.; Passaglia, Luciane M. P.

    2014-01-01

    This study evaluated the diversity of cultivable plant growth-promoting (PGP) bacteria associated with apple trees cultivated under different crop management systems and their antagonistic ability against Colletotrichum gloeosporioides. Samples of roots and rhizospheric soil from apple trees cultivated in organic and conventional orchards in southern Brazil were collected, together with soil samples from an area never used for agriculture (native field). Bacteria were identified at the genus ...

  9. Fungi and Bacteria in or on Leaves of Eelgrass (Zostera marina L.) from Chesapeake Bay †

    OpenAIRE

    Newell, Steven Y.

    1981-01-01

    Samples of green and brown leaves of eelgrass (Zostera marina L.) were incubated in seawater without an additional carbon source. Parallel leaf samples were used for acridine orange bacterial counting and water-soluble aniline blue estimation of fungal biovolume. The incubations produced no evidence that there is an eelgrass counterpart for the chytridialean symbiont which is very common in turtlegrass (Thalassia testudinum König). Sterile mycelium (i.e., living mycelium without identifiable ...

  10. Genotypic diversity among rhizospheric bacteria of three legumes assessed by cultivation-dependent and cultivation-independent techniques.

    Science.gov (United States)

    Pongsilp, Neelawan; Nimnoi, Pongrawee; Lumyong, Saisamorn

    2012-02-01

    The genotypic diversity of rhizospheric bacteria of 3 legumes including Vigna radiata, Arachis hypogaea and Acacia mangium was compared by using cultivation-dependent and cultivation-independent methods. For cultivation-dependent method, Random amplified polymorphic DNA (RAPD) profiles revealed that the bacterial genetic diversity of V. radiata and A. mangium rhizospheres was higher than that of A. hypogaea rhizosphere. For cultivation-independent method, Denaturing gradient gel electrophoresis (DGGE) profiles of PCR-amplified 16S rRNA genes revealed the difference in bacterial community and diversity of rhizospheres collected from 3 legumes. The ribotype richness which indicates species diversity, was highest in V. radiata rhizosphere, followed by A. hypogaea and A. mangium rhizospheres, respectively. Three kinds of media were used to cultivate different target groups of bacteria. The result indicates that the communities of cultivable bacteria in 3 rhizospheres recovered from nutrient agar (NA) medium were mostly different from each other, while Bradyrhizobium selective medium (BJSM) and nitrogen-free medium shaped the communities of cultivable bacteria. Nine isolates grown on BJSM were identified by 16S rRNA gene sequence analysis. These isolates were very closely related (with 96% to 99% identities) to either one of the three groups including Cupriavidus-Ralstonia group, Bacillus group and Bradyrhizobium-Bosea-Afipia group. The rhizospheres were also examined for their enzymatic patterns. Of 19 enzymes tested, 3 rhizospheres were distinguishable by the presence or the absence of leucine acrylamidase and acid phosphatase. The selected cultivable bacteria recovered from NA varied in their abilities to produce indole-acetic acid and ammnonia. The resistance to 10 antibiotics was indistinguishable among bacteria isolated from different rhizospheres. PMID:22806857

  11. Bacterias marinas nativas degradadoras de compuestos orgánicos persistentes en Colombia.

    OpenAIRE

    Gómez García, Marta Liliana; Vivas Aguas, Lizbeth Janet; Ruiz R., Rubén Alberto; Reyes D., Viviana Rocío; Hurtado, Claudia Alexandra

    2006-01-01

    Este documento menciona de manera concisa algunas de las técnicas de biorremediación con las que se puede lograr la biodegradación de un contaminante, describiendo brevemente las características de las bacterias, su morfología y técnicas de aislamiento e identificación, explicando el impacto de los hidrocarburos y plaguicidas sobre el mar y presentando un panorama de la biorremediación en Colombia.

  12. Presencia de bacterias asociadas a nieve marina en arrecifes influenciados por escorrentía continental del Caribe colombiano: primer acercamiento

    Directory of Open Access Journals (Sweden)

    Hernán Alejandro Henao-Castro

    2015-06-01

    Full Text Available Parte del deterioro de los arrecifes de coral se atribuye al efecto del aporte de agua dulce cargada de nutrientes y sedimentos finos. Estas condiciones favorecen la formación de nieve marina lodosa que transporta gran carga de bacterias que pueden ser patógenos de corales. Por lo anterior, se estudió la presencia de bacterias asociadas a nieve marina lodosa en una zona arrecifal del Caribe colombiano en un gradiente de distancia a la desembocadura del canal del Dique (Cartagena. Por medio de técnicas moleculares PCR-DGGE, se registró baja riqueza, con bandas representativas de siete bacterias diferentes. El número de especies varió según el sitio, pero no hubo relación con la cercanía a la fuente de escorrentía. Como estudio pionero, sirve como punto de partida para estudios en arrecifes del Caribe colombiano impactados por escorrentía.

  13. Marina Facilities

    OpenAIRE

    2014-01-01

    The CIRPAS main facility and headquarters are at Marina Municipal Airport (formerly Fritchie Field, Fort Ord) in Marina, California. CIRPAS has a 30,000 sq. ft. maintenance hanger there, which houses staff offices, an instrument and calibration laboratory, maintenance and payload integration shops, conference rooms, and flight planning and operations control center.

  14. Cultivable bacteria isolated from apple trees cultivated under different crop systems: Diversity and antagonistic activity against Colletotrichum gloeosporioides.

    Science.gov (United States)

    Dos Passos, João Frederico M; da Costa, Pedro B; Costa, Murilo D; Zaffari, Gilmar R; Nava, Gilberto; Boneti, José Itamar; de Oliveira, Andréia Mara R; Passaglia, Luciane M P

    2014-09-01

    This study evaluated the diversity of cultivable plant growth-promoting (PGP) bacteria associated with apple trees cultivated under different crop management systems and their antagonistic ability against Colletotrichum gloeosporioides. Samples of roots and rhizospheric soil from apple trees cultivated in organic and conventional orchards in southern Brazil were collected, together with soil samples from an area never used for agriculture (native field). Bacteria were identified at the genus level by PCR-RFLP and partial sequencing of the 16S rRNA, and were evaluated for some PGP abilities. The most abundant bacterial genera identified were Enterobacter (27.7%), Pseudomonas (18.7%), Burkholderia (13.7%), and Rahnella (12.3%). Sixty-nine isolates presented some antagonist activity against C. gloeosporioides. In a greenhouse experiment, five days after exposure to C. gloeosporioides, an average of 30% of the leaf area of plants inoculated with isolate 89 (identified as Burkholderia sp.) were infected, whereas 60 to 73% of the leaf area of untreated plants was affected by fungal attack. Our results allowed us to infer how anthropogenic activity is affecting the bacterial communities in soil associated with apple tree crop systems, and to obtain an isolate that was able to delay the emergence of an important disease for this culture. PMID:25249780

  15. Cultivable bacteria isolated from apple trees cultivated under different crop systems: Diversity and antagonistic activity against Colletotrichum gloeosporioides

    Directory of Open Access Journals (Sweden)

    João Frederico M. dos Passos

    2014-09-01

    Full Text Available This study evaluated the diversity of cultivable plant growth-promoting (PGP bacteria associated with apple trees cultivated under different crop management systems and their antagonistic ability against Colletotrichum gloeosporioides. Samples of roots and rhizospheric soil from apple trees cultivated in organic and conventional orchards in southern Brazil were collected, together with soil samples from an area never used for agriculture (native field. Bacteria were identified at the genus level by PCR-RFLP and partial sequencing of the 16S rRNA, and were evaluated for some PGP abilities. The most abundant bacterial genera identified were Enterobacter (27.7%, Pseudomonas (18.7%, Burkholderia (13.7%, and Rahnella (12.3%. Sixty-nine isolates presented some antagonist activity against C. gloeosporioides. In a greenhouse experiment, five days after exposure to C. gloeosporioides, an average of 30% of the leaf area of plants inoculated with isolate 89 (identified as Burkholderia sp. were infected, whereas 60 to 73% of the leaf area of untreated plants was affected by fungal attack. Our results allowed us to infer how anthropogenic activity is affecting the bacterial communities in soil associated with apple tree crop systems, and to obtain an isolate that was able to delay the emergence of an important disease for this culture.

  16. Cultivation of Flavobacteria and other in situ abundant bacteria from the North Sea

    OpenAIRE

    Hahnke, Richard

    2013-01-01

    The isolation and cultivation of heterotrophic marine bacteria opens possibilities to study their physiology and genomes with respect to their function in the marine environment. In the pelagic marine realm bacteria remineralize more than half of the photosynthetically produced biomass, and thus play an important role in the biogeochemical cycling of elements. Flavobacteria are abundant of up to 30% in the North Sea. In previous studies marine Gammaproteobacteria, Alphaproteobacteria and Acti...

  17. Distribution of Brown Blotch Bacteria in Wild and Cultivated Species of Basidiomycetes

    OpenAIRE

    Bessette, Alan E.

    1984-01-01

    Wild and cultivated Basidiomycetes species were cultured to determine the distribution of bacteria causing brown blotch disease of Agaricus bisporus. Colonies from each basidiocarp were screened for brown blotch organisms by the white line and host pathogenicity tests. Isolates causing brown blotch were identified as Pseudomonas tolaasi and an Arthrobacter species.

  18. Bacteria associated with compost used for cultivation of Indian edible mushroom Lentinus tuber-regium (Fr.)

    OpenAIRE

    J. Manjunathan,; V. Kaviyarasan

    2011-01-01

    The bacteria involved in an outdoor single phase composting using sawdust and wheat bran as substrates for cultivation of Lentinus tuber-regium (Fr). Composting was carried out for 15 days. The highestcore and peripheral temperatures were 66 and 45ºC, respectively, while the lowest temperature was 36ºC. The highest number of bacteria in the core and peripheral compost were 5.81x106 and 6.51x106 cfu/ml,respectively. Bacteria isolated and characterized from the fermenting agricultural substrate...

  19. Cultivation Techniques of Bacteria-Melon-Rice Cultivation Pattern%菌-瓜-稻耕作模式示范栽培技术

    Institute of Scientific and Technical Information of China (English)

    颜舜杨

    2014-01-01

    In recent year, Bacteria-Melon-Rice Cultivation Pattern was promoted in Jianyang county, which achieved good economic benefits. In this paper, we introduced planting performance and high-yielding cultivation techniques of Bacteria-Melon-Rice cultivation pattern.%近年建阳市进行菌—瓜—稻模式试验示范,取得很好的经济效益。介绍了菌—瓜—稻模式示范的栽培技术。

  20. Cultivation-dependent and cultivation-independent characterisation of hydrocarbon-degrading bacteria in Guaymas Basin sediments

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    Tony eGutierrez

    2015-07-01

    Full Text Available Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP, a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [13C]phenanthrene. The dominant sequences in clone libraries constructed from 13C-enriched bacterial DNA (from phenanthrene enrichments were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled phenanthrene and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity, and used this strain to provide direct evidence of phenanthrene degradation and mineralization. In addition, we isolated Halomonas, Thalassospira and Lutibacterium spp. with demonstrable phenanthrene-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea.

  1. Cultivation-dependent and cultivation-independent characterization of hydrocarbon-degrading bacteria in Guaymas Basin sediments.

    Science.gov (United States)

    Gutierrez, Tony; Biddle, Jennifer F; Teske, Andreas; Aitken, Michael D

    2015-01-01

    Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP), a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH)-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [(13)C]-phenanthrene (PHE). The dominant sequences in clone libraries constructed from (13)C-enriched bacterial DNA (from PHE enrichments) were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled PHE and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity), and used this strain to provide direct evidence of PHE degradation and mineralization. In addition, we isolated Halomonas, Thalassospira, and Lutibacterium sp. with demonstrable PHE-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea. PMID:26217326

  2. Cellular viability of Saccharomyces cerevisiae cultivated in association with contaminates bacteria of alcoholic fermentation

    International Nuclear Information System (INIS)

    The aim of this work was to study the influence of the bacteria Bacillus and Lactobacillus, as well as their metabolic products, in reduction of cellular viability of Saccharomyces cerevisiae, when in mixed culture of yeast and active and treated bacteria. Also was to evaluated an alternative medium (MCC) for the cultivation of bacteria and yeast, constituted of sugarcane juice diluted to 5 deg Brix and supplemented with yeast extract and peptone. The bacteria Bacillus subtilis, Bacillus coagulans, Bacillus stearothermophilus, Lactobacillus fermentum and Lactobacillus plantarum were cultivated in association with yeast Saccharomyces cerevisiae (strain Y-904) for 72 h on 32 deg C, under agitation. The cellular viability, budding rate and population of S. cerevisiae, the total acidity, volatile acidity and pH of culture were determined from 0, 24, 48 e 72 h of mixed culture. Also were determined the initial and final of microorganism population across the pour plate method, in traditional culture medium (PCA for Bacillus, MRS-agar for Lactobacillus and YEPD-agar for yeast S. cerevisiae) and in medium constituted of sugarcane juice. The bacteria cultures were treated by heat sterilization (120 deg C for 20 minutes), antibacterial agent (Kamoran HJ in concentration 3,0 ppm) or irradiation (radiation gamma, with doses of 5,0 kGy for Lactobacillus and 15,0 kGy for Bacillus). The results of the present research showed that just the culture mediums more acids (with higher concentrations of total and volatile acidity, and smaller values of pH), contaminated with active bacteria L. fermentum and B. subtilis, caused reduction on yeast cellular viability. Except the bacteria B. subtilis treated with radiation, the others bacteria treated by different procedures (heat, radiation e antibacterial) did not cause reduction on yeast cellular viability and population, indicating that the isolated presence of the cellular metabolic of theses bacteria was not enough to reduce the

  3. Phylogenetic analysis of cultivable bacteria isolated from Arctic sea-ice

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Phylogenetic analysis based on 16S rDNA of 8 strains of cultivable bacteria isolated from Arctic sea-ice was studied. The results showed that strain BJ1 belonged to genus Planococcus, which was a genus of low mole percent G+C gram-positive bacteria; strain BJ6 belonged to genus Burkholderia of β- proteobacteria and the rest 6 strain all belonged to γ-proteobacteria, of which strain BJ8 was a species of Pseudoalteromonas, strain BJ2-BJ5 and BJ7 were members of genus Psychrobacter. Phylogenetic analysis also indicated that bacteria of genus Psychrobacter of the isolates formed a relatively independent phylogenetic cluster in comparison with other bacteria belonged to genus Psychrobacter.

  4. Bacteria associated with compost used for cultivation of Indian edible mushroom Lentinus tuber-regium (Fr.

    Directory of Open Access Journals (Sweden)

    J. Manjunathan,

    2011-01-01

    Full Text Available The bacteria involved in an outdoor single phase composting using sawdust and wheat bran as substrates for cultivation of Lentinus tuber-regium (Fr. Composting was carried out for 15 days. The highestcore and peripheral temperatures were 66 and 45ºC, respectively, while the lowest temperature was 36ºC. The highest number of bacteria in the core and peripheral compost were 5.81x106 and 6.51x106 cfu/ml,respectively. Bacteria isolated and characterized from the fermenting agricultural substrates include Escherichia coli, Pseudomonas aeruginosa, Bacillus polymyxa, Enterobacter aerogenes, Micrococcus roseus, Micrococcus luteus, Citrobacter freundii, Bacillus subtilis, Clostridium perfringens, Bacillus licheniformis, and Bacillus cereus,Proteus mirabilis. The implication of the presence of these bacteria is discussed.

  5. Cultivation of methanotrophic bacteria in opposing gradients of methane and oxygen

    OpenAIRE

    Bussmann, Ingeborg; Rahalkar, Monali; Schink, Bernhard

    2006-01-01

    In sediments, methane-oxidizing bacteria live in opposing gradients of methane and oxygen. In such a gradient system, the fluxes of methane and oxygen are controlled by diffusion and consumption rates, and the rate-limiting substrate is maintained at a minimum concentration at the layer of consumption. Opposing gradients of methane and oxygen were mimicked in a specific cultivation set-up in which growth of methanotrophic bacteria occurred as a sharp band at either c. 5 or 20mm below the air-...

  6. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters

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    Julia del C. Martínez-Rodríguez

    2014-12-01

    Full Text Available Agave tequilana Weber var. 'Azul' is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria into eight different taxa that shared high homology with other known sequences. Bacterial endophytes were identified as Acinectobacter sp., A. baumanii, A. bereziniae, Cronobacter sakazakii, Enterobacter hormaechei, Bacillus sp. Klebsiella oxytoca, Pseudomonas sp., Enterococcus casseliflavus, Leuconostoc mesenteroides subsp. mesenteroides and Gluconobacter oxydans. Isolates were confirmed to be plant growth promoting bacteria (PGPB by their capacities for nitrogen fixation, auxin production, phosphate solubilization, or antagonism against Fusarium oxysporum AC132. E. casseliflavus JM47 and K. oxytoca JM26 secreted the highest concentrations of IAA. The endophyte Acinectobacter sp. JM58 exhibited the maximum values for nitrogen fixation and phosphate solubilization index (PSI. Inhibition of fungi was found in Pseudomonas sp. JM9p and K. oxytoca JM26. Bacterial endophytes show promise for use as bio-inoculants for agave cultivation. Use of endophytes to enhance cultivation of agave may be particularly important for plants produced by micropropagation techniques, where native endophytes may have been lost.

  7. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters

    Science.gov (United States)

    Martínez-Rodríguez, Julia del C.; la Mora-Amutio, Marcela De; Plascencia-Correa, Luis A.; Audelo-Regalado, Esmeralda; Guardado, Francisco R.; Hernández-Sánchez, Elías; Peña-Ramírez, Yuri J.; Escalante, Adelfo; Beltrán-García, Miguel J.; Ogura, Tetsuya

    2014-01-01

    Agave tequilana Weber var. ‘Azul’ is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria into eight different taxa that shared high homology with other known sequences. Bacterial endophytes were identified as Acinectobacter sp., A. baumanii, A. bereziniae, Cronobacter sakazakii, Enterobacter hormaechei, Bacillus sp. Klebsiella oxytoca, Pseudomonas sp., Enterococcus casseliflavus, Leuconostoc mesenteroides subsp. mesenteroides and Gluconobacter oxydans. Isolates were confirmed to be plant growth promoting bacteria (PGPB) by their capacities for nitrogen fixation, auxin production, phosphate solubilization, or antagonism against Fusarium oxysporum AC132. E. casseliflavus JM47 and K. oxytoca JM26 secreted the highest concentrations of IAA. The endophyte Acinectobacter sp. JM58 exhibited the maximum values for nitrogen fixation and phosphate solubilization index (PSI). Inhibition of fungi was found in Pseudomonas sp. JM9p and K. oxytoca JM26. Bacterial endophytes show promise for use as bio-inoculants for agave cultivation. Use of endophytes to enhance cultivation of agave may be particularly important for plants produced by micropropagation techniques, where native endophytes may have been lost. PMID:25763038

  8. Preferential cultivation of type II methanotrophic bacteria from littoral sediments (Lake Constance)

    OpenAIRE

    Bussmann, Ingeborg; Pester, Michael; Brune, Andreas; Schink, Bernhard

    2004-01-01

    Most widely used medium for cultivation of methanotrophic bacteria from various environments is that proposed in 1970 by Whittenbury. In order to adapt and optimize medium for culturing of methanotrophs from freshwater sediment, media with varying concentrations of substrates, phosphate, nitrate, and other mineral salts were used to enumerate methanotrophs by the most probable number method. High concentrations (s1 mM) of magnesium and sulfate, and high concentrations of nitrate (s500 WM) sig...

  9. Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

    OpenAIRE

    Knief, Claudia

    2015-01-01

    Methane-oxidizing bacteria are characterized by their capability to grow on methane as sole source of carbon and energy. Cultivation-dependent and -independent methods have revealed that this functional guild of bacteria comprises a substantial diversity of organisms. In particular the use of cultivation-independent methods targeting a subunit of the particulate methane monooxygenase (pmoA) as functional marker for the detection of aerobic methanotrophs has resulted in thousands of sequences ...

  10. Fate of antibiotic resistant cultivable heterotrophic bacteria and antibiotic resistance genes in wastewater treatment processes.

    Science.gov (United States)

    Zhang, Songhe; Han, Bing; Gu, Ju; Wang, Chao; Wang, Peifang; Ma, Yanyan; Cao, Jiashun; He, Zhenli

    2015-09-01

    Antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) are emerging contaminants of environmental concern. Heterotrophic bacteria in activated sludge have an important role in wastewater treatment plants (WWTPs). However, the fate of cultivable heterotrophic ARB and ARGs in WWPTs process remains unclear. In the present study, we investigated the antibiotic-resistant phenotypes of cultivable heterotrophic bacteria from influent and effluent water of three WWTPs and analysed thirteen ARGs in ARB and in activated sludge from anoxic, anaerobic and aerobic compartments. From each influent or effluent sample of the three plants, 200 isolates were randomly tested for susceptibility to 12 antibiotics. In these samples, between 5% and 64% isolates showed resistance to >9 antibiotics and the proportion of >9-drug-resistant bacteria was lower in isolates from effluent than from influent. Eighteen genera were identified in 188 isolates from influent (n=94) and effluent (n=94) of one WWTP. Six genera (Aeromonas, Bacillus, Lysinibacillus, Microbacterium, Providencia, and Staphylococcus) were detected in both influent and effluent samples. Gram-negative and -positive isolates dominated in influent and effluent, respectively. The 13 tetracycline-, sulphonamide-, streptomycin- and β-lactam-resistance genes were detected at a higher frequency in ARB from influent than from effluent, except for sulA and CTX-M, while in general, the abundances of ARGs in activated sludge from two of the three plants were higher in aerobic compartments than in anoxic ones, indicating abundant ARGs exit in the excess sledges and/or in uncultivable bacteria. These findings may be useful for elucidating the effect of WWTP on ARB and ARGs. PMID:25950407

  11. Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria

    DEFF Research Database (Denmark)

    Rettedal, Elizabeth; Gumpert, Heidi; Sommer, Morten

    2014-01-01

    The human gut microbiota is linked to a variety of human health issues and implicated in antibiotic resistance gene dissemination. Most of these associations rely on culture-independent methods, since it is commonly believed that gut microbiota cannot be easily or sufficiently cultured. Here, we...... microbiota. Based on the phenotypic mapping, we tailor antibiotic combinations to specifically select for previously uncultivated bacteria. Utilizing this method we cultivate and sequence the genomes of four isolates, one of which apparently belongs to the genus Oscillibacter; uncultivated Oscillibacter...

  12. In Vitro Cultivation of ‘Unculturable’ Oral Bacteria, Facilitated by Community Culture and Media Supplementation with Siderophores

    OpenAIRE

    Vartoukian, Sonia Rebecca; Adamowska, Aleksandra; Lawlor, M.; Moazzez, Rebecca; Dewhirst, Floyd E.; Wade, William Geoffrey

    2016-01-01

    Over a third of oral bacteria are as-yet-uncultivated in-vitro. Siderophores have been previously shown to enable in-vitro growth of previously uncultivated bacteria. The objective of this study was to cultivate novel oral bacteria in siderophore-supplemented culture media. Various compounds with siderophore activity, including pyoverdines-Fe-complex, desferricoprogen and salicylic acid, were found to stimulate the growth of difficult-to-culture strains Prevotella sp. HOT-376 and Fretibacteri...

  13. Analysis of rhizosphere bacteria of rice cultivated in Andosol lowland and upland fields using molecular biological methods

    OpenAIRE

    DOI, Tetsuya; Hagiwara, Yusuke; Abe, Jun; Morita, Shigenori

    2007-01-01

    Bacteria in the rhizosphere influence plant growth and interact with plant roots. Microscopy and culture method have been used for studies of microorganisms of the rhizosphere, but these methods are insufficient for evaluation because most rhizosphere bacteria are viable but non-culturable (VBNC). Bacteria in the rhizosphere of rice cultivated in Andosol lowland and upland fields were analyzed in this study using PCR-DGGE and FISH, in combination with modified pretreatments. Results show that...

  14. Identification of Major Cultivable Aerobic Bacteria in the Oral Cavity of Malaysian Subjects

    Directory of Open Access Journals (Sweden)

    Koshy Philip

    2008-01-01

    Full Text Available Culture dependent and culture independent methods have shown that about 600 species of bacteria inhabit the human oral cavity. While some oral microorganisms have a direct link to dental caries, periodontal disease and halitosis, opportunistic pathogens may be responsible for systemic diseases such as bacterial endocarditis, aspiration pneumonia, osteomyelitis in children, preterm low birth weight, coronary heart disease and cerebral infarction (or stroke. This study employs bacterial 16S rDNA sequences to rapidly identify the major cultivable aerobic bacteria in the oral cavity of Malaysian subjects. The data obtained shows that the oral cavity of healthy volunteers contains a number of potentially pathogenic organisms including Streptococcus pneumoniae and Staphylococcus aureus. The need to profile and characterize these microorganisms using rapid detection methods can go a long way in developing future management strategies in clinical setting to enhance oral health in the Malaysian population.

  15. Diversity and habitat preferences of cultivated and uncultivated aerobic methanotrophic bacteria evaluated based on pmoA as molecular marker

    Directory of Open Access Journals (Sweden)

    Claudia eKnief

    2015-12-01

    Full Text Available Methane-oxidizing bacteria are characterized by their capability to grow on methane as sole source of carbon and energy. Cultivation-dependent and –independent methods have revealed that this functional guild of bacteria comprises a substantial diversity of organisms. In particular the use of cultivation-independent methods targeting a subunit of the particulate methane monooxygenase (pmoA as functional marker for the detection of aerobic methanotrophs has resulted in thousands of sequences representing unknown methanotrophic bacteria. This limits data interpretation due to restricted information about these uncultured methanotrophs. A few groups of uncultivated methanotrophs are assumed to play important roles in methane oxidation in specific habitats, while the biology behind other sequence clusters remains still largely unknown. The discovery of evolutionary related monooxygenases in non-methanotrophic bacteria and of pmoA paralogs in methanotrophs requires that sequence clusters of uncultivated organisms have to be interpreted with care. This review article describes the present diversity of cultivated and uncultivated aerobic methanotrophic bacteria based on pmoA gene sequence diversity. It summarizes current knowledge about cultivated and major clusters of uncultivated methanotrophic bacteria and evaluates habitat specificity of these bacteria at different levels of taxonomic resolution. Habitat specificity exists for diverse lineages and at different taxonomic levels. Methanotrophic genera such as Methylocystis and Methylocaldum are identified as generalists, but they harbor habitat specific methanotrophs at species level. This finding implies that future studies should consider these diverging preferences at different taxonomic levels when analyzing methanotrophic communities.

  16. Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

    Science.gov (United States)

    Knief, Claudia

    2015-01-01

    Methane-oxidizing bacteria are characterized by their capability to grow on methane as sole source of carbon and energy. Cultivation-dependent and -independent methods have revealed that this functional guild of bacteria comprises a substantial diversity of organisms. In particular the use of cultivation-independent methods targeting a subunit of the particulate methane monooxygenase (pmoA) as functional marker for the detection of aerobic methanotrophs has resulted in thousands of sequences representing “unknown methanotrophic bacteria.” This limits data interpretation due to restricted information about these uncultured methanotrophs. A few groups of uncultivated methanotrophs are assumed to play important roles in methane oxidation in specific habitats, while the biology behind other sequence clusters remains still largely unknown. The discovery of evolutionary related monooxygenases in non-methanotrophic bacteria and of pmoA paralogs in methanotrophs requires that sequence clusters of uncultivated organisms have to be interpreted with care. This review article describes the present diversity of cultivated and uncultivated aerobic methanotrophic bacteria based on pmoA gene sequence diversity. It summarizes current knowledge about cultivated and major clusters of uncultivated methanotrophic bacteria and evaluates habitat specificity of these bacteria at different levels of taxonomic resolution. Habitat specificity exists for diverse lineages and at different taxonomic levels. Methanotrophic genera such as Methylocystis and Methylocaldum are identified as generalists, but they harbor habitat specific methanotrophs at species level. This finding implies that future studies should consider these diverging preferences at different taxonomic levels when analyzing methanotrophic communities. PMID:26696968

  17. Functional abilities of cultivable plant growth promoting bacteria associated with wheat (Triticum aestivum L.) crops.

    Science.gov (United States)

    Moreira, Fernanda da S; Costa, Pedro B da; Souza, Rocheli de; Beneduzi, Anelise; Lisboa, Bruno B; Vargas, Luciano K; Passaglia, Luciane M P

    2016-03-01

    In the pursuit of sustainable agriculture, bioinoculants usage as providers of a crop's needs is a method to limit environmental damage. In this study, a collection of cultivable putative plant growth promoting (PGP) bacteria associated with wheat crops was obtained and this bacterial sample was characterized in relation to the functional diversity of certain PGP features. The isolates were obtained through classical cultivation methods, identified by partial 16S rRNA gene sequencing and characterized for PGP traits of interest. Functional diversity characterization was performed using Categorical Principal Component Analysis (CatPCA) and Multiple Correspondence Analysis (MCA). The most abundant genera found among the 346 isolates were Pseudomonas, Burkholderia, and Enterobacter. Occurrence of PGP traits was affected by genus, niche, and sampling site. A large number of genera grouped together with the ability to produce indolic compounds; phosphate solubilization and siderophores production formed a second group related to fewer genera, in which the genus Burkholderia has a great importance. The results obtained may help future studies aiming prospection of putative plant growth promoting bacteria regarding the desired organism and PGP trait. PMID:27007904

  18. Functional abilities of cultivable plant growth promoting bacteria associated with wheat (Triticum aestivum L. crops

    Directory of Open Access Journals (Sweden)

    Fernanda da S. Moreira

    2016-03-01

    Full Text Available Abstract In the pursuit of sustainable agriculture, bioinoculants usage as providers of a crop's needs is a method to limit environmental damage. In this study, a collection of cultivable putative plant growth promoting (PGP bacteria associated with wheat crops was obtained and this bacterial sample was characterized in relation to the functional diversity of certain PGP features. The isolates were obtained through classical cultivation methods, identified by partial 16S rRNA gene sequencing and characterized for PGP traits of interest. Functional diversity characterization was performed using Categorical Principal Component Analysis (CatPCA and Multiple Correspondence Analysis (MCA. The most abundant genera found among the 346 isolates were Pseudomonas, Burkholderia, and Enterobacter. Occurrence of PGP traits was affected by genus, niche, and sampling site. A large number of genera grouped together with the ability to produce indolic compounds; phosphate solubilization and siderophores production formed a second group related to fewer genera, in which the genus Burkholderia has a great importance. The results obtained may help future studies aiming prospection of putative plant growth promoting bacteria regarding the desired organism and PGP trait.

  19. DIVERSIDAD DE BACTERIAS CULTIVABLES DE LA COSTA DE CALETA OLIVIA, PATAGONIA, ARGENTINA Diversity Of Cultivable Bacteria From The Coast Of Caleta Olivia, Patagonia , Argentina

    Directory of Open Access Journals (Sweden)

    GRACIELA PUCCI

    Full Text Available Caleta Olivia es una ciudad que posee boyas por donde se exporta el petróleo crudo obtenido de la zona norte de la provincia de Santa Cruz, Argentina. Este trabajo tuvo como objetivo estudiar las posibilidades de utilización microbiana de petróleo crudo y sus derivados e identificar las bacterias cultivables que se encuentran presentes en la costa de Caleta Olivia. La mineralización de hidrocarburos se detectó por la producción de dióxido de carbono. Se tomaron muestras de agua de mar y sedimento intermarial de tres sitios. Se realizaron recuentos bacterianos en los medios de cultivo BBR, BRN, medio mineral con petróleo gas oil y ENDO para bacterias coliformes. Las bacterias se identificaron utilizando el sistema de Sherlock de MIDI. Las mineralizaciones evidenciaron la capacidad existente en los microorganismos para la utilización de hidrocarburos. Los recuentos de coliformes fueron negativos. Se aislaron un total de 403 cepas a las que se les realizó la extracción de ácidos grasos e identificación, de ellas solo 172 fueron identificadas por el sistema. Se distribuyeron en 32 géneros y 50 especies bacterianas. El resto, el sistema no las identificó debido a que no halló cepas similares en la base de datos del sistema. Pseudoalteromonas fue el género que más se aisló. El análisis de componentes principales asoció al verano y al otoño con la mayor biodiversidad de géneros. Se encontraron representantes de los siguientes géneros: Arthrobacter, Dietzia, Acinetobacter, Microbacterium, Micrococcus, Bacillus, Pseudomonas y Pseudoalteromonas. Estos microorganismos son citados en la bibliografía como degradadores de hidrocarburos.The aim of this work was to evaluate the oil utilization and identity of the bacterial strains present in the coast Intertidal sediments and marine water from Caleta Olivia city which were analyzed to determine bacterial counts. Five microcosms were designed for sediments and water sample. The

  20. OBTAINING OF PROTEIC BIOMASS BY CULTIVATION OF LACTIC ACID BACTERIA ON GRAPE MARC DIFFUSION SOLUTION

    Directory of Open Access Journals (Sweden)

    Marian BUTU

    2013-08-01

    Full Text Available In this article are presented the researches made in order to obtain protein biomass with the aid of lactic bacteria grown on an economically medium, achieved by using secondary products from the winery: marc and wine yeast. Therefore, there were cultivated two strains of Lactobacillus sp. on five different growth medium. The protein biosynthesis and evolution of lactic fermentation were monitored by determining the optical density (OD of the culture at a wavelength λ = 600 nm and by counting the colony forming units (CFU by serial dilutions and seeding on plates and by determination of lactic acid obtained. The results showed that the fermentation medium represented by diffusion solution of the marc, enriched with peptone is economically profitable compared to other culture media containing peptone, yeast extract, glucose, minerals, amino acids and vitamins presented in the literature.

  1. Diversity of Cultivable Methane-Oxidizing Bacteria in Microsites of a Rice Paddy Field: Investigation by Cultivation Method and Fluorescence in situ Hybridization (FISH)

    OpenAIRE

    Dianou, Dayéri; Ueno, Chihoko; Ogiso, Takuya; Kimura, Makoto; Asakawa, Susumu

    2012-01-01

    The diversity of cultivable methane-oxidizing bacteria (MOB) in the rice paddy field ecosystem was investigated by combined culture-dependent and fluorescence in situ hybridization (FISH) techniques. Seven microsites of a Japanese rice paddy field were the focus of the study: floodwater, surface soil, bulk soil, rhizosphere soil, root, basal stem of rice plant, and rice stumps of previous harvest. Based on pmoA gene analysis and transmission electron microscopy (TEM), four type I, and nine ty...

  2. Impacts of intensive shrimp cultivation on bacteria in the nitrogen cycle and physicochemical properties of sediments

    Directory of Open Access Journals (Sweden)

    Duangporn Kantachote

    2007-01-01

    Full Text Available Bacterial numbers involved in the nitrogen cycle and some physicochemical properties in sediments of 4 intensive shrimp ponds, that had been cultivated continuously for 3 and 5 years, were studied between November 2004 to February 2005. The parameters were monitored as follows:, pH, electrical conductivity, organic matter, total Kjeldahl nitrogen (TKN, C/N ratio, ammonium, nitrite, and nitrate. The only significant differences (p 5-10 cm for both types of pond. Total numbers were in the order of heterotrophic plate count > azotobacteraceae > ammonifiers > denitrifiers > ammonium oxidizing bacteria > nitrite oxidizing bacteria.No significant difference was found between each bacterial group in the 2 levels of sediments from each sample set. In pond sediments from both sets of ponds organic matter was highly correlated with TKN (r = 0.783, p < 0.05,r = 0.883, p < 0.01 indicating that ammonia release and the increase pH in the sediments was to some extent determined by the deposit of organic matter.

  3. Impact of mulches and growing season on indicator bacteria survival during lettuce cultivation.

    Science.gov (United States)

    Xu, Aixia; Buchanan, Robert L; Micallef, Shirley A

    2016-05-01

    In fresh produce production, the use of mulches as ground cover to retain moisture and control weeds is a common agricultural practice, but the influence that various mulches have on enteric pathogen survival and dispersal is unknown. The goal of this study was to assess the impact of different mulching methods on the survival of soil and epiphytic fecal indicator bacteria on organically grown lettuce during different growing seasons. Organically managed lettuce, cultivated with various ground covers - polyethylene plastic, corn-based biodegradable plastic, paper and straw mulch - and bare ground as a no-mulch control, was overhead inoculated with manure-contaminated water containing known levels of generic Escherichia coli and Enterococcus spp. Leaves and soil samples were collected at intervals over a two week period on days 0, 1, 3, 5, 7, 10 and 14, and quantitatively assessed for E. coli, fecal coliforms and Enterococcus spp. Data were analyzed using mixed models with repeated measures and an exponential decline with asymptote survival model. Indicator bacterial concentrations in the lettuce phyllosphere decreased over time under all treatments, with more rapid E. coli declines in the fall than in the spring (pmodel gave very good fits for the progression of E. coli concentrations in the phyllosphere over time (R(2)=0.88±0.12). In the spring season, decline rates of E. coli counts were faster (2013 p=0.18; 2014 psoil compared to lettuce phyllosphere, and mulch type was a factor for fecal coliform levels (pstudy demonstrates that mulches used in lettuce production may impact the fate of enteric bacteria in soil or on lettuce, most likely in relation to soil moisture retention, and other weather-related factors, such as temperature and rainfall. The data suggest that the time between exposure to a source of enteric bacteria and harvesting of the crop is season dependent, which has implications for determining best harvest times. PMID:26938806

  4. Selection of proteolytic bacteria with ability to inhibit Vibrio harveyi during white shrimp (Litopenaeus vannamei cultivation

    Directory of Open Access Journals (Sweden)

    Suntinanalert, P.

    2007-03-01

    Full Text Available Five isolates of bacteria with high proteolytic activity, isolated from water samples of intensive shrimp ponds in southern Thailand, were selected to test for the ability to control the shrimp pathogen Vibrioharveyi. 70 μl of each culture broth were investigated for their ability to inhibit V. harveyi using an agar well diffusion test but only one isolate W3 gave a reasonable sized inhibition zone of 21.62 mm. This zone wassimilar to that of oxolinic acid (2 μg and sulfamethoxazole (25 μg. The W3 isolate was identified as Pseudomonas sp. Shrimp cultivation in aquaria was conducted to investigate the inhibition of V. harveyi bythe isolate W3. The experiment consisted of a treatment of the shrimp culture with an inoculum of the isolate W3 and V. harveyi (biocontrol set, a positive control set (only inoculation of V. harveyi and a negativecontrol set as without inoculation. No mortality was found in the negative control. Shrimp mortality in the biocontrol set (33% was lower than that in the positive control set (40%; however, it showed no significantdifference (p>0.05. The average numbers of V. harveyi over 12 days of the biocontrol set were lower than those in the positive control set by about 1 log cycle although the numbers were not significantly different(p>0.05. The shrimp growth rate at day 32 of cultivation was in order of the biocontrol treatment (10.17% > the negative control treatment (9.44% > the positive control set (9.28%, but no significant difference (p>0.05 was observed among treatments.

  5. The cultivable surface microbiota of the brown alga Ascophyllum nodosum is enriched in macroalgal-polysaccharide-degrading bacteria

    Directory of Open Access Journals (Sweden)

    Marjolaine Martin

    2015-12-01

    Full Text Available Bacteria degrading algal polysaccharides are key players in the global carbon cycle and in algal biomass recycling. Yet the water column, which has been studied largely by metagenomic approaches, is poor in such bacteria and their algal-polysaccharide-degrading enzymes. Even more surprisingly, the few published studies on seaweed-associated microbiomes have revealed low abundances of such bacteria and their specific enzymes. However, as macroalgal cell-wall polysaccharides do not accumulate in nature, these bacteria and their unique polysaccharidases must not be that uncommon. We, therefore, looked at the polysaccharide-degrading activity of the cultivable bacterial subpopulation associated with Ascophyllum nodosum. From A. nodosum triplicates, 324 bacteria were isolated and taxonomically identified. Out of these isolates, 78 (~25% were found to act on at least one tested algal polysaccharide (agar, ι- or κ-carrageenan, or alginate. The isolates active on algal-polysaccharides belong to 11 genera: Cellulophaga, Maribacter, Algibacter, and Zobellia in the class Flavobacteriia (41 and Pseudoalteromonas, Vibrio, Cobetia, Shewanella, Colwellia, Marinomonas, and Paraglaceciola in the class Gammaproteobacteria (37. A major part represents likely novel species. Different proportions of bacterial phyla and classes were observed between the isolated cultivable subpopulation and the total microbial community previously identified on other brown algae. Here, Bacteroidetes and Gammaproteobacteria were found to be the most abundant and some phyla (as Planctomycetes and Cyanobacteria frequently encountered on brown algae weren’t identified. At a lower taxonomic level, twelve genera, well-known to be associated with algae (with the exception for Colwellia, were consistently found on all three A. nosodum samples. Even more interesting, 9 of the 11 above mentioned genera containing polysaccharolytic isolates were predominant in this common core. The

  6. Effect of wastewater-borne bacteria on algal growth and nutrients removal in wastewater-based algae cultivation system.

    Science.gov (United States)

    Ma, Xiaochen; Zhou, Wenguang; Fu, Zongqiang; Cheng, Yanling; Min, Min; Liu, Yuhuan; Zhang, Yunkai; Chen, Paul; Ruan, Roger

    2014-09-01

    Centrate, a type of nutrient-rich municipal wastewater was used to determine the effect of wastewater-borne bacteria on algal growth and nutrients removal efficiency in this study. The characteristics of algal and bacterial growth profiles, wastewater nutrient removal and effect of initial algal inoculums were systematically examined. The results showed that initial algal concentration had apparent effect on bacterial growth, and the presence of bacteria had a significant influence on algal growth pattern, suggesting symbiotic relationship between algae and bacteria at the initial stage of algae cultivation. The maximum algal biomass of 2.01 g/L with 0.1g/L initial algal inoculums concentration can be obtained during algae cultivation in raw centrate medium. The synergistic effect of centrate-borne bacteria and microalgae on algae growth and nutrient removal performance at initial fast growth stage has great potential to be applied to pilot-scale wastewater-based algae wastewater system cultivated in continuous or semi-continuous mode. PMID:24968106

  7. Solubility of methane in water and in a medium for the cultivation of methanotrophs bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Serra, Maria Celeste C. [Centro de Quimica Estrutural, IST, Av. Rovisco Pais, 1096 Lisbon (Portugal) and Centro de Investigacao em Engenharia Quimica e Biotecnologia, ISEL, Av. Conselheiro Emidio Navarro, 1950-062 Lisbon (Portugal)]. E-mail: mcserra@deq.isel.ipl.pt; Pessoa, F.L.P. [DEQ/EQ/UFRJ CT, Bl E, Sl 209, Ilha do Fundao, Rio de Janeiro 21949/900 (Brazil)]. E-mail: fernando.pessoa@pesquisador.cnpq.br; Palavra, A.M.F. [Centro de Quimica Estrutural, IST, Av. Rovisco Pais, 1096 Lisbon (Portugal)]. E-mail: amfpalavra@popsrv.ist.utl.pt

    2006-12-15

    Solubility of methane in water and in an aqueous growth medium for the cultivation of methanotrophs bacteria was determined over the temperature range 293.15 to 323.15 K and at atmospheric pressure. The measurements were carried out in a Ben-Naim/Baer type apparatus with a precision of about {+-}0.3%. The experimental results were determined using accurate thermodynamic relations. The mole fractions of the dissolved gas at the gas partial pressure of 101.325 kPa, the Henry coefficients at the water vapour pressure and the Ostwald coefficients at infinite dilution were obtained. A comparison between the solubility of methane in water and those observed in fermentation medium over the temperature range of 298.15 to 308.15 K has shown that this gas is about {+-}2.3% more soluble in water. The temperature dependence of the mole fractions of methane was also determined using the Clarke-Glew-Weiss equation and the thermodynamic quantities, Gibbs energy, enthalpy and entropy changes, associated with the dissolution process were calculated. Furthermore, the experimental Henry coefficients for methane in water are compared with those calculated by the scaled particle theory. The estimated Henry coefficients are about {+-}4% lower than the experimental ones.

  8. Solubility of methane in water and in a medium for the cultivation of methanotrophs bacteria

    International Nuclear Information System (INIS)

    Solubility of methane in water and in an aqueous growth medium for the cultivation of methanotrophs bacteria was determined over the temperature range 293.15 to 323.15 K and at atmospheric pressure. The measurements were carried out in a Ben-Naim/Baer type apparatus with a precision of about ±0.3%. The experimental results were determined using accurate thermodynamic relations. The mole fractions of the dissolved gas at the gas partial pressure of 101.325 kPa, the Henry coefficients at the water vapour pressure and the Ostwald coefficients at infinite dilution were obtained. A comparison between the solubility of methane in water and those observed in fermentation medium over the temperature range of 298.15 to 308.15 K has shown that this gas is about ±2.3% more soluble in water. The temperature dependence of the mole fractions of methane was also determined using the Clarke-Glew-Weiss equation and the thermodynamic quantities, Gibbs energy, enthalpy and entropy changes, associated with the dissolution process were calculated. Furthermore, the experimental Henry coefficients for methane in water are compared with those calculated by the scaled particle theory. The estimated Henry coefficients are about ±4% lower than the experimental ones

  9. Persistent Wolbachia and cultivable bacteria infection in the reproductive and somatic tissues of the mosquito vector Aedes albopictus.

    Directory of Open Access Journals (Sweden)

    Karima Zouache

    Full Text Available BACKGROUND: Commensal and symbiotic microbes have a considerable impact on the behavior of many arthropod hosts, including hematophagous species that transmit pathogens causing infectious diseases to human and animals. Little is known about the bacteria associated with mosquitoes other than the vectorized pathogens. This study investigated Wolbachia and cultivable bacteria that persist through generations in Ae. albopictus organs known to host transmitted arboviruses, such as dengue and chikungunya. METHODOLOGY/PRINCIPAL FINDINGS: We used culturing, diagnostic and quantitative PCR, as well as in situ hybridization, to detect and locate bacteria in whole individual mosquitoes and in dissected tissues. Wolbachia, cultivable bacteria of the genera Acinetobacter, Comamonas, Delftia and Pseudomonas co-occurred and persisted in the bodies of both males and females of Ae. albopictus initially collected in La Réunion during the chikungunya outbreak, and maintained as colonies in insectaries. In dissected tissues, Wolbachia and the cultivable Acinetobacter can be detected in the salivary glands. The other bacteria are commonly found in the gut. Quantitative PCR estimates suggest that Wolbachia densities are highest in ovaries, lower than those of Acinetobacter in the gut, and approximately equal to those of Acinetobacter in the salivary glands. Hybridization using specific fluorescent probes successfully localized Wolbachia in all germ cells, including the oocytes, and in the salivary glands, whereas the Acinetobacter hybridizing signal was mostly located in the foregut and in the anterior midgut. CONCLUSIONS/SIGNIFICANCE: Our results show that Proteobacteria are distributed in the somatic and reproductive tissues of mosquito where transmissible pathogens reside and replicate. This location may portend the coexistence of symbionts and pathogens, and thus the possibility that competition or cooperation phenomena may occur in the mosquito vector Ae

  10. The Dikkowita Marina Project

    NARCIS (Netherlands)

    Broekman, E.G.; Buckers, M.D.; Rest, M.H.; Ligthart, D.

    2016-01-01

    The large fishery harbour of Dikkowita faces some problems with respect to revenues and conflicts between the users. To create a higher revenue and to avoid these conflicts, a marina will be implemented. This report discusses the different aspects implementing a marina in the harbour of Dikkowita.

  11. Removal of radioactivity and safe vegetables cultivation from highly radioactivity polluted soil in Fukushima using photosynthetic bacteria

    International Nuclear Information System (INIS)

    The soil pollution caused by radioactive substances released from the accident of TEPCO Fukushima Daiichi Nuclear Power Station has been still serious interference against agricultural reconstruction. This study used the soil contaminated with high radioactivity (13,602∼87,181 Bq/kg) in Namie Town, Fukushima Prefecture, and performed decontamination using photosynthetic bacteria in a simple outdoor practical test using a 60 L container. Using the soil after decontamination, the authors cultivated vegetables such as komatsuna (Japanese mustard spinach), and bok choy, the results of which are reported. As photosynthetic bacteria, Rhodobacter shaerodes SSI species was used. This paper describes the cultivation method of bacteria, preparation method of immobilization grain, decontamination method, and cultivation method of vegetables. As a result of the experiment, the decontamination efficient of the soil was between 59.5 to 73.3%, and cultured vegetables passed the edible reference value (edible criteria for infants: 50 Bq/kg FW), which was the success of the experiment. (A.O.)

  12. Cultivable bacteria populations associated with leaves of banana and plantain plants and their antagonistic activity against Mycosphaerella fijiensis.

    Science.gov (United States)

    Ceballos, Isabel; Mosquera, Sandra; Angulo, Mónica; Mira, John J; Argel, Luz Edith; Uribe-Velez, Daniel; Romero-Tabarez, Magally; Orduz-Peralta, Sergio; Villegas, Valeska

    2012-10-01

    Mycosphaerella fijiensis is the etiological agent of Black Sigatoka, a fungal disease that affects production of banana and plantain crops in tropical regions. The sizes of cultivable epiphytic and endophytic bacterial populations, aerobic endospore forming bacteria (AEFB), and antagonist bacteria against M. fijiensis isolated from three Musa spp. cultivars from Urabá (Colombia) were studied, in order to find a suitable screening strategy to isolate antagonistic bacteria. Most of the variability found in the epiphytic and endophytic bacterial community sizes among fruit trees was explained by the cultivar differences. We found population sizes ranging from 1.25 × 10(3) to 9.64 × 10(5) CFU/g of fresh leaf and found that 44 % of total cultivable bacteria belong to the AEFB group. We isolated 648 AEFB from three different cultivars and assessed their antagonistic activity against M. fijiensis using the cell-free supernatant obtained from bacterial liquid cultures in three different in vitro assays. Five percent of those bacteria showed higher percent inhibition than the positive control Bacillus subtilis UA321 has (percent inhibition = 84 ± 5) in the screening phase. Therefore, they were selected as antagonistic bacteria against the pathogen. The strains with the highest percentage of antagonism were found in older leaves for the three cultivars, given support to recommend this group of leaves for future samplings. Some of these isolated bacteria affected the mycelium and ascospores morphology of the fungus. They also presented in vitro characteristics related to a successful colonization of the phylloplane such as indolic compounds, surfactant production, and biofilm formation, which makes them possible, potential candidates as biological control agents. PMID:22562105

  13. Cultivable endophytic bacteria from leaf bases of Agave tequilana and their role as plant growth promoters

    OpenAIRE

    Julia del C. Martínez-Rodríguez; Marcela De la Mora-Amutio; Plascencia-Correa, Luis A.; Esmeralda Audelo-Regalado; Francisco R. Guardado; Elías Hernández-Sánchez; Peña-Ramírez, Yuri J.; Adelfo Escalante; Miguel J. Beltrán-García; Tetsuya Ogura

    2015-01-01

    Agave tequilana Weber var. 'Azul' is grown for the production of tequila, inulin and syrup. Diverse bacteria inhabit plant tissues and play a crucial role for plant health and growth. In this study culturable endophytic bacteria were extracted from leaf bases of 100 healthy Agave tequilana plants. In plant tissue bacteria occurred at mean population densities of 3 million CFU/g of fresh plant tissue. Three hundred endophytic strains were isolated and 16s rDNA sequences grouped the bacteria in...

  14. Effects of Some Beneficial Bacteria in Casing Soil on Growth and Yield of Cultivated Mushroom Agaricus bisporus

    Directory of Open Access Journals (Sweden)

    Mehmet Çetin

    2016-03-01

    Full Text Available This research was carried out to determine the interaction between some bacteria naturally existing in casing soil and Agaricus bisporus (Sylvan Hauser A15 hypha in laboratory (in vitro and cultivation (in vivo conditions, and to confirm its effects on mushroom yield. Totally 32 bacteria (3 Gram (+ and 29 Fluorescent Pseudomonads was isolated from casing soil and healthy sporophores. As a result of in vitro experiment carried out to determine the effects of bacteria on mycelium growth of A. bisporus, 24 bacterial isolates were found more effective at the rate of 2 to 115% than control treatment. To determine the effects of bacterium, chosen at the end of in vitro experiments, on mushroom yield in cultivation conditions, three experiments were established in March, May and July in 2008. At the end of experiments, bacterial isolates provided 8 – 40 % increase in total yield. Population density and change in population number related to time was observed during growing period, after the inoculation of bacterial isolates into casing soil. According to the results, Pseudomonas fluorescens (T 4/2 and Ş 8, P.putida (Ş 2/1 and Ş 10 and Bacillus mycoides (T 7/2 bacterial isolates were colonized successfully both in casing soil and sporophores.

  15. Isolation of cultivable thermophilic lactic acid bacteria from cheeses made with mesophilic starter and molecular comparison with dairy-related Lactobacillus helveticus strains

    DEFF Research Database (Denmark)

    Jensen, Marie Elisabeth Penderup; Ardö, Ylva Margareta; Vogensen, Finn Kvist

    2009-01-01

    Aims: To isolate cultivable thermophilic lactic acid bacteria from cheeses made with mesophilic starter and compare them with dairy-related Lactobacillus helveticus strains using molecular typing methods. Methods and Results: The number of thermophilic bacteria in seven commercial cheeses...... was identical to the rep-PCR profile of the Lact. helveticus adjunct culture used in the specific cheese, but their pulsed field gel electrophoresis profiles differed slightly. Conclusion: It was possible to isolate cultivable thermophilic bacteria from ripened cheeses manufactured with mesophilic...... starter and thermophilic adjunct cultures by using an enumeration step. Significance and Impact of the Study: Isolation of cultivable thermophilic bacteria from ripened cheeses made with mesophilic starters offers an original source for new dairy-relevant cultures....

  16. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea

    Science.gov (United States)

    Jeanthon, C.; Boeuf, D.; Dahan, O.; Le Gall, F.; Garczarek, L.; Bendif, E. M.; Lehours, A.-C.

    2011-07-01

    Aerobic anoxygenic phototrophic (AAP) bacteria play significant roles in the bacterioplankton productivity and biogeochemical cycles of the surface ocean. In this study, we applied both cultivation and mRNA-based molecular methods to explore the diversity of AAP bacteria along an oligotrophic gradient in the Mediterranean Sea in early summer 2008. Colony-forming units obtained on three different agar media were screened for the production of bacteriochlorophyll-a (BChl-a), the light-harvesting pigment of AAP bacteria. BChl-a-containing colonies represented a low part of the cultivable fraction. In total, 54 AAP strains were isolated and the phylogenetic analyses based on their 16S rRNA and pufM genes showed that they were all affiliated to the Alphaproteobacteria. The most frequently isolated strains belonged to Citromicrobium bathyomarinum, and Erythrobacter and Roseovarius species. Most other isolates were related to species not reported to produce BChl-a and/or may represent novel taxa. Direct extraction of RNA from seawater samples enabled the analysis of the expression of pufM, the gene coding for the M subunit of the reaction centre complex of aerobic anoxygenic photosynthesis. Clone libraries of pufM gene transcripts revealed that most phylotypes were highly similar to sequences previously recovered from the Mediterranean Sea and a large majority (~94 %) was affiliated to the Gammaproteobacteria. The most abundantly detected phylotypes occurred in the western and eastern Mediterranean basins. However, some were exclusively detected in the eastern basin, reflecting the highest diversity of pufM transcripts observed in this ultra-oligotrophic region. To our knowledge, this is the first study to document extensively the diversity of AAP isolates and to unveil the active AAP community in an oligotrophic marine environment. By pointing out the discrepancies between culture-based and molecular methods, this study highlights the existing gaps in the understanding

  17. A disposable picolitre bioreactor for cultivation and investigation of industrially relevant bacteria on the single cell level.

    Science.gov (United States)

    Grünberger, Alexander; Paczia, Nicole; Probst, Christopher; Schendzielorz, Georg; Eggeling, Lothar; Noack, Stephan; Wiechert, Wolfgang; Kohlheyer, Dietrich

    2012-05-01

    In the continuously growing field of industrial biotechnology the scale-up from lab to industrial scale is still a major hurdle to develop competitive bioprocesses. During scale-up the productivity of single cells might be affected by bioreactor inhomogeneity and population heterogeneity. Currently, these complex interactions are difficult to investigate. In this report, design, fabrication and operation of a disposable picolitre cultivation system is described, in which environmental conditions can be well controlled on a short time scale and bacterial microcolony growth experiments can be observed by time-lapse microscopy. Three exemplary investigations will be discussed emphasizing the applicability and versatility of the device. Growth and analysis of industrially relevant bacteria with single cell resolution (in particular Escherichia coli and Corynebacterium glutamicum) starting from one single mother cell to densely packed cultures is demonstrated. Applying the picolitre bioreactor, 1.5-fold increased growth rates of C. glutamicum wild type cells were observed compared to typical 1 litre lab-scale batch cultivation. Moreover, the device was used to analyse and quantify the morphological changes of an industrially relevant l-lysine producer C. glutamicum after artificially inducing starvation conditions. Instead of a one week lab-scale experiment, only 1 h was sufficient to reveal the same information. Furthermore, time lapse microscopy during 24 h picolitre cultivation of an arginine producing strain containing a genetically encoded fluorescence sensor disclosed time dependent single cell productivity and growth, which was not possible with conventional methods. PMID:22511122

  18. Optimal Media for Use in Air Sampling To Detect Cultivable Bacteria and Fungi in the Pharmacy

    OpenAIRE

    Weissfeld, Alice S.; Joseph, Riya Augustin; Le, Theresa V.; Trevino, Ernest A.; Schaeffer, M. Frances; Vance, Paula H.

    2013-01-01

    Current guidelines for air sampling for bacteria and fungi in compounding pharmacies require the use of a medium for each type of organism. U.S. Pharmacopeia (USP) chapter (http://www.pbm.va.gov/linksotherresources/docs/USP797PharmaceuticalCompoundingSterileCompounding.pdf) calls for tryptic soy agar with polysorbate and lecithin (TSApl) for bacteria and malt extract agar (MEA) for fungi. In contrast, the Controlled Environment Testing Association (CETA), the professional organization for in...

  19. Cultivable Alginate Lyase-Excreting Bacteria Associated with the Arctic Brown Alga Laminaria

    Directory of Open Access Journals (Sweden)

    Yu-Zhong Zhang

    2012-11-01

    Full Text Available Although some alginate lyases have been isolated from marine bacteria, alginate lyases-excreting bacteria from the Arctic alga have not yet been investigated. Here, the diversity of the bacteria associated with the brown alga Laminaria from the Arctic Ocean was investigated for the first time. Sixty five strains belonging to nine genera were recovered from six Laminaria samples, in which Psychrobacter (33/65, Psychromonas (10/65 and Polaribacter (8/65 were the predominant groups. Moreover, 21 alginate lyase-excreting strains were further screened from these Laminaria-associated bacteria. These alginate lyase-excreting strains belong to five genera. Psychromonas (8/21, Psedoalteromonas (6/21 and Polaribacter (4/21 are the predominant genera, and Psychrobacter, Winogradskyella, Psychromonas and Polaribacter were first found to produce alginate lyases. The optimal temperatures for the growth and algiante lyase production of many strains were as low as 10–20 °C, indicating that they are psychrophilic bacteria. The alginate lyases produced by 11 strains showed the highest activity at 20–30 °C, indicating that these enzymes are cold-adapted enzymes. Some strians showed high levels of extracellular alginate lyase activity around 200 U/mL. These results suggest that these algiante lyase-excreting bacteria from the Arctic alga are good materials for studying bacterial cold-adapted alginate lyases.

  20. Primeros registros de bacterias marinas heterótrofas y hongos aislados de los arrecifes que bordean la plataforma SW de Cuba.

    OpenAIRE

    Miravet, M. E.; Enríquez, D.; Lugioyo, G.M.; Delgado, Y.; R. Núñez; Cabrera, H.; Martí, J.

    2003-01-01

    Se registran por primera vez para los arrecifes de la plataforma SW cubana, la presencia de 5 géneros y 16 especies de bacterias heterótrofas aeróbicas y 15 géneros de hongos, de los cuales, 7 se identificaron hasta especie. Los géneros Bacillus sp. (bacteria) y Aspergillus sp. (hongo) resultaron los más cosmopolitas de todos los géneros encontrados, predominando en las aguas y sedimentos de todos los arrecifes estudiados. Del total de cepas aisladas la mayor diversidad de géne...

  1. Cultivation of Fastidious Bacteria by Viability Staining and Micromanipulation in a Soil Substrate Membrane System▿

    OpenAIRE

    Ferrari, B. C.; Gillings, M. R.

    2009-01-01

    Soil substrate membrane systems allow for microcultivation of fastidious soil bacteria as mixed microbial communities. We isolated established microcolonies from these membranes by using fluorescence viability staining and micromanipulation. This approach facilitated the recovery of diverse, novel isolates, including the recalcitrant bacterium Leifsonia xyli, a plant pathogen that has never been isolated outside the host.

  2. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    C. Jeanthon

    2011-05-01

    Full Text Available Aerobic anoxygenic phototrophic (AAP bacteria play significant roles in the bacterioplankton productivity and biogeochemical cycles of the surface ocean. In this study, we applied both cultivation and mRNA-based molecular methods to explore the diversity of AAP bacteria along an oligotrophic gradient in the Mediterranean Sea in early summer 2008. Colony-forming units obtained on three different agar media were screened for the production of bacteriochlorophyll-a (BChl-a, the light-harvesting pigment of AAP bacteria. BChl-a-containing colonies represented a low part of the cultivable fraction. In total, 52 AAP strains were isolated and the phylogenetic analyses based on their 16S rRNA and pufM genes showed that they were all affiliated to the Alphaproteobacteria. The most frequently isolated strains belonged to Citromicrobium bathyomarinum, and Erythrobacter and Roseovarius species. Most other isolates were related to species not reported to produce BChl-a and/or may represent novel taxa. Direct extraction of RNA from seawater samples enabled the analysis of the expression of pufM, the gene coding for the M subunit of the reaction centre complex of aerobic anoxygenic photosynthesis. Clone libraries of pufM gene transcripts revealed that most phylotypes were highly similar to sequences previously recovered from the Mediterranean Sea and a large majority (~94% was affiliated with the Gammaproteobacteria. The most abundantly detected phylotypes occurred in the western and eastern Mediterranean basins. However, some were exclusively detected in the eastern basin, reflecting the highest diversity of pufM transcripts observed in this ultra-oligotrophic region. To our knowledge, this is the first study to document extensively the diversity of AAP isolates and to unveil the active AAP community in an oligotrophic marine environment. By pointing out the

  3. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    C. Jeanthon

    2011-07-01

    Full Text Available Aerobic anoxygenic phototrophic (AAP bacteria play significant roles in the bacterioplankton productivity and biogeochemical cycles of the surface ocean. In this study, we applied both cultivation and mRNA-based molecular methods to explore the diversity of AAP bacteria along an oligotrophic gradient in the Mediterranean Sea in early summer 2008. Colony-forming units obtained on three different agar media were screened for the production of bacteriochlorophyll-a (BChl-a, the light-harvesting pigment of AAP bacteria. BChl-a-containing colonies represented a low part of the cultivable fraction. In total, 54 AAP strains were isolated and the phylogenetic analyses based on their 16S rRNA and pufM genes showed that they were all affiliated to the Alphaproteobacteria. The most frequently isolated strains belonged to Citromicrobium bathyomarinum, and Erythrobacter and Roseovarius species. Most other isolates were related to species not reported to produce BChl-a and/or may represent novel taxa. Direct extraction of RNA from seawater samples enabled the analysis of the expression of pufM, the gene coding for the M subunit of the reaction centre complex of aerobic anoxygenic photosynthesis. Clone libraries of pufM gene transcripts revealed that most phylotypes were highly similar to sequences previously recovered from the Mediterranean Sea and a large majority (~94 % was affiliated to the Gammaproteobacteria. The most abundantly detected phylotypes occurred in the western and eastern Mediterranean basins. However, some were exclusively detected in the eastern basin, reflecting the highest diversity of pufM transcripts observed in this ultra-oligotrophic region. To our knowledge, this is the first study to document extensively the diversity of AAP isolates and to unveil the active AAP community in an oligotrophic marine environment. By pointing out the discrepancies

  4. Antimicrobial activities of novel cultivable bacteria isolated from marine sponge Tedania anhelans

    Institute of Scientific and Technical Information of China (English)

    ZENG Zhen; ZHAO Jing; KE Caihuan; WANG Dexiang

    2013-01-01

    Marine sponge Tedania anhelans distributes throughout the intertidal zone of Fujian,southeastern China,and is a potential source of natural bioactive products.The sponge harbors a large number of bacterial groups that have been identified using various techniques,including fluorescent in situ hybridization (FISH).Fractionation of dissociated sponge allowed isolation of 25 bacterial species.Based on 16S rRNA gene sequencing,phylogenetic analysis attributed most of these eubacteria to a-Proteobacteria,γ-Proteobacteria,Cytophaga/Flavobacterium/Bacteroidetes (CFB group),and the family Bacillaceae of Gram-positive bacteria.In sequence similarity,five putatively novel species were identified with less than 98% similarity to other strains in the NCBI database.Tests for antimicrobial activities were performed against Gram-positive bacteria,Gram-negative bacteria,fungi,antitumor indicators Escherichia coli 343/591 (with DNA repair deficiency),regular E.coli 343/636 (with different DNA repair capacity),and 10 bacterial isolates exhibited inhibitory bioactivities.Among these strains,three isolates were detected involving function gene NRPS-A domains,which were most closely related to the amino acid sequences of linear gramicidin synthetase and pyoverdine synthetase.These results contribute to our knowledge of the microbes associated with marine sponges and further reveal novel bacterial resources for the screening of bioactive marine natural products.

  5. Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, noncultured, vacuolate sulfur bacteria.

    Science.gov (United States)

    Ahmad, Azeem; Kalanetra, Karen M; Nelson, Douglas C

    2006-06-01

    Within the last 10 years, numerous SSU rRNA sequences have been collected from natural populations of conspicuous, vacuolate, colorless sulfur bacteria, which form a phylogenetically cohesive cluster (large-vacuolate sulfur bacteria clade) in the gamma-Proteobacteria. Currently, this clade is composed of four named or de facto genera: all known Thioploca and Thiomargarita strains, all vacuolate Beggiatoa strains, and several strains of vacuolate, attached filaments, which bear a superficial similarity to Thiothrix. Some of these vacuolate bacteria accumulate nitrate for respiratory purposes. This clade encompasses the largest known prokaryotic cells (Thiomargarita namibiensis) and several strains that are important in the global marine sulfur cycle. Here, we report additional sequences from five pure culture strains of Beggiatoa spp., including the only two cultured marine strains (nonvacuolate), which firmly establish the root of this vacuolate clade. Each of several diverse metabolic motifs, including obligate and facultative chemolithoautotrophy, probable mixotrophy, and seemingly strict organoheterotrophy, is represented in at least one of the nonvacuolate strains that root the vacuolate clade. Because the genus designation Beggiatoa is interspersed throughout the vacuolate clade along with other recognized or de facto genera, the need for taxonomic revision is clear. PMID:16788728

  6. Actividad antagónica entre bacterias epibióticas aisladas de esponjas marinas del Caribe colombiano y su relación con la macroepibiosis

    OpenAIRE

    Mora-Cristancho, J.; Zea, S.; Gil-Agudelo, D.

    2009-01-01

    Las superficies sumerigdas en el mar son densamente colonizadas por bacterias y sus interacciones, tales como la inhibición del crecimiento, son importantes para determinar el desarollo de comunidades bactarinas, como también de posteriores etapas de las macroepibiosis. Para determinar el potencial de interacción entre bactarias de las biopelículas de esponjas, se realizaron ensayos de actividad de inhibición in vitro de crecimiento entre cepas bacterianas aisladas de superficies con diferent...

  7. Temporal Eukarya, Bacteria, and Archaea biodiversity during cultivation of an alkaliphilic algae, Chlorella vulgaris, in an outdoor raceway pond

    Directory of Open Access Journals (Sweden)

    Tisza Ann Szeremy Bell

    2016-01-01

    Full Text Available Algal biofuels and valuable co-products are being produced in both open and closed cultivation systems. Growing algae in open pond systems may be a more economical alternative, but this approach allows environmental microorganisms to colonize the pond and potentially infect or outcompete the algal crop. In this study, we monitored the microbial community of an outdoor, open raceway pond inoculated with a high lipid-producing alkaliphilic alga, Chlorella vulgaris BA050. The strain C. vulgaris BA050 was previously isolated from Soap Lake, Washington, a system characterized by a high pH (approximately 9.8. An outdoor raceway pond (200L was inoculated with C. vulgaris and monitored for ten days and then the culture was transferred to a 2,000L raceway pond and cultivated for an additional six days. Community DNA samples were collected over the 16-day period in conjunction with water chemistry analyses and cell counts. Universal primers for the SSU rRNA gene sequences for Eukarya, Bacteria, and Archaea were used for barcoded pyrosequence determination. The environmental parameters that most closely correlated with C. vulgaris abundance were pH and phosphate. Community analyses indicated that the pond system remained dominated by the Chlorella population (93% of eukaryotic sequences, but was also colonized by other microorganisms. Bacterial sequence diversity increased over time while archaeal sequence diversity declined over the same time period. Using SparCC co-occurrence network analysis, a positive correlation was observed between C. vulgaris and Pseudomonas sp. throughout the experiment, which may suggest a symbiotic relationship between the two organisms. The putative relationship coupled with high pH may have contributed to the success of C. vulgaris. The characterization of the microbial community dynamics of an alkaliphilic open pond system provides significant insight into open pond systems that could be used to control photoautotrophic

  8. Making soy sauce from defatted soybean meal without the mejus process by submerged cultivation using thermophilic bacteria.

    Science.gov (United States)

    Hur, Jeong Min; Park, Doo Hyun

    2015-08-01

    The diversity of thermophilic bacteria was not significantly altered while growing in a defatted soybean meal (DFSM) slurry at 60 °C for 10, 20, and 30 days. Five species of thermophilic bacteria, which belong to the genera Aeribacillus (temperature gradient gel electrophoresis [TGGE] band no. 1), Saccharococcus (TGGE band no. 2), Geobacillus (TGGE band no. 3), Bacillus (TGGE band no. 4), and Anoxybacillus (TGGE band no. 5), were detected in the fermenting DFSM slurry. The cell-free culture fluid obtained from the fermenting DFSM slurry on day 14 hydrolyzed starch and soy protein at 60 °C but not at 30 °C. Soy sauce (test soy sauce) was prepared from the fermented DFSM slurry after a 30 day cultivation at 60 °C and a 60 day ripening at 45 °C. Free amino acid (AA) and organic acid contents in the soy sauce increased in proportion to the fermentation period, whereas ammonium decreased proportionally. Mg and Ca contained in the soy sauce decreased proportionally during fermentation and were lower than those in the non-fermented DFSM extract (control). Spectral absorbance of soy sauce prepared from the fermented DFSM slurry was maximal at 430 nm and increased slightly in proportion to the fermentation period. The aroma and flavor of the test soy sauce were significantly different from those of traditional Korean soy sauce. Conclusively, soy sauce may be prepared directly from the fermented DFSM slurry without meju-preparing process and fermentation period may be a factor for control of soy sauce quality. PMID:26243923

  9. Solid and liquid media for isolating and cultivating acidophilic and acid-tolerant sulfate-reducing bacteria.

    Science.gov (United States)

    Ňancucheo, Ivan; Rowe, Owen F; Hedrich, Sabrina; Johnson, D Barrie

    2016-05-01

    Growth media have been developed to facilitate the enrichment and isolation of acidophilic and acid-tolerant sulfate-reducing bacteria (aSRB) from environmental and industrial samples, and to allow their cultivation in vitro The main features of the 'standard' solid and liquid devised media are as follows: (i) use of glycerol rather than an aliphatic acid as electron donor; (ii) inclusion of stoichiometric concentrations of zinc ions to both buffer pH and to convert potentially harmful hydrogen sulphide produced by the aSRB to insoluble zinc sulphide; (iii) inclusion of Acidocella aromatica (an heterotrophic acidophile that does not metabolize glycerol or yeast extract) in the gel underlayer of double layered (overlay) solid media, to remove acetic acid produced by aSRB that incompletely oxidize glycerol and also aliphatic acids (mostly pyruvic) released by acid hydrolysis of the gelling agent used (agarose). Colonies of aSRB are readily distinguished from those of other anaerobes due to their deposition and accumulation of metal sulphide precipitates. Data presented illustrate the effectiveness of the overlay solid media described for isolating aSRB from acidic anaerobic sediments and low pH sulfidogenic bioreactors. PMID:27036143

  10. Cellular viability of Saccharomyces cerevisiae cultivated in association with contaminates bacteria of alcoholic fermentation;Viabilidade celular de Saccharomyces cerevisiae cultivada em associacao com bacterias contaminantes da fermentacao alcoolica

    Energy Technology Data Exchange (ETDEWEB)

    Nobre, Thais de Paula

    2005-07-01

    The aim of this work was to study the influence of the bacteria Bacillus and Lactobacillus, as well as their metabolic products, in reduction of cellular viability of Saccharomyces cerevisiae, when in mixed culture of yeast and active and treated bacteria. Also was to evaluated an alternative medium (MCC) for the cultivation of bacteria and yeast, constituted of sugarcane juice diluted to 5 deg Brix and supplemented with yeast extract and peptone. The bacteria Bacillus subtilis, Bacillus coagulans, Bacillus stearothermophilus, Lactobacillus fermentum and Lactobacillus plantarum were cultivated in association with yeast Saccharomyces cerevisiae (strain Y-904) for 72 h on 32 deg C, under agitation. The cellular viability, budding rate and population of S. cerevisiae, the total acidity, volatile acidity and pH of culture were determined from 0, 24, 48 e 72 h of mixed culture. Also were determined the initial and final of microorganism population across the pour plate method, in traditional culture medium (PCA for Bacillus, MRS-agar for Lactobacillus and YEPD-agar for yeast S. cerevisiae) and in medium constituted of sugarcane juice. The bacteria cultures were treated by heat sterilization (120 deg C for 20 minutes), antibacterial agent (Kamoran HJ in concentration 3,0 ppm) or irradiation (radiation gamma, with doses of 5,0 kGy for Lactobacillus and 15,0 kGy for Bacillus). The results of the present research showed that just the culture mediums more acids (with higher concentrations of total and volatile acidity, and smaller values of pH), contaminated with active bacteria L. fermentum and B. subtilis, caused reduction on yeast cellular viability. Except the bacteria B. subtilis treated with radiation, the others bacteria treated by different procedures (heat, radiation e antibacterial) did not cause reduction on yeast cellular viability and population, indicating that the isolated presence of the cellular metabolic of theses bacteria was not enough to reduce the

  11. Optimal Cultivation Time for Yeast and Lactic Acid Bacteria in Fermented Milk and Effects of Fermented Soybean Meal on Rumen Degradability Using Nylon Bag Technique

    Science.gov (United States)

    Polyorach, S.; Poungchompu, O.; Wanapat, M.; Kang, S.; Cherdthong, A.

    2016-01-01

    The objectives of this study were to determine an optimal cultivation time for populations of yeast and lactic acid bacteria (LAB) co-cultured in fermented milk and effects of soybean meal fermented milk (SBMFM) supplementation on rumen degradability in beef cattle using nylon bag technique. The study on an optimal cultivation time for yeast and LAB growth in fermented milk was determined at 0, 4, 8, 24, 48, 72, and 96 h post-cultivation. After fermenting for 4 days, an optimal cultivation time of yeast and LAB in fermented milk was selected and used for making the SBMFM product to study nylon bag technique. Two ruminal fistulated beef cattle (410±10 kg) were used to study on the effect of SBMFM supplementation (0%, 3%, and 5% of total concentrate substrate) on rumen degradability using in situ method at incubation times of 0, 2, 4, 6, 12, 24, 48, and 72 h according to a Completely randomized design. The results revealed that the highest yeast and LAB population culture in fermented milk was found at 72 h-post cultivation. From in situ study, the soluble fractions at time zero (a), potential degradability (a+b) and effective degradability of dry matter (EDDM) linearly (pcultivation and supplementation of SBMFM at 5% of total concentrate substrate could improve rumen degradability of beef cattle. However, further research on effect of SBMFM on rumen ecology and production performance in meat and milk should be conducted using in vivo both digestion and feeding trials. PMID:26954119

  12. How do Bacteria Adapt to the Red Sea? Cultivation and Genomic and Physiological Characterization of Oligotrophic Bacteria of the PS1, OM43, and SAR11 Clades

    KAUST Repository

    Jimenez Infante, Francy M.

    2015-05-01

    Given the high salinity, prevailing annual high temperatures, and ultra-oligotrophic conditions in the Red Sea isolation and characterization of important microbial groups thriving in this environment is important in understanding the ecological significance and metabolic capabilities of these communities. By using a high-­throughput cultivation technique in natural seawater amended with minute amounts of nutrients, members of the rare biosphere (PS1), methylotrophic Betaproteobacteria (OM43), and the ubiquitous and abundant SAR11 group (Pelagibacterales), were isolated in pure culture. Phylogenetic analyses of Red Sea isolates along with comparative genomics with close representatives from disparate provinces revealed ecotypes and genomic differentiation among the groups. Firstly, the PS1 alphaproteobacterial clade was found to be present in very low abundance in several metagenomic datasets form divergent environments. While strain RS24 (Red Sea) harbored genomic islands involved in polymer degradation, IMCC14465 (East (Japan) Sea) contained unique genes for degradation of aromatic compounds. Secondly, methylotrophic OM43 bacteria from the Red Sea (F5, G12 and H7) showed higher similarities with KB13 isolate from Hawaii, forming a ‘H-­RS’ (Hawaii-­Red Sea) cluster separate from HTCC2181 (Oregon isolate). HTCC2181 members were shown to prevail in cold, productive coastal environments and had an nqrA-­F system for energy generation by sodium motive force. On the contrary, H-­RS cluster members may be better adapted to warm and oligotrophic environments, and seem to generate energy by using a proton-­translocating NADH:Quinone oxidoreductase (complex I; nuoA-­N subunits). Moreover, F5, G12, and H7 had unique proteins related to resistance to UV, temperature and salinity, in addition to a heavy metal ‘resistance island’ as adaptive traits to cope with the environmental conditions in the Red Sea. Finally, description of the Red Sea Pelagibacterales

  13. Biodiversity of Dominant Cultivable Endophytic Bacteria Inhabiting Tissues of Six Different Cultivars of Maize (Zea mays L. ssp. mays) Cropped under Field Conditions.

    Science.gov (United States)

    Pisarska, Katarzyna; Pietr, Stanisław Jerzy

    2015-01-01

    Endophytic bacteria (EnB) play a crucial role in plant development. This study was an attempt to isolate and identify dominant cultivable EnB inhabiting young seedlings germinated in vitro and leaves of six maize cultivars grown under field conditions at temperate climate zone with culture-dependent approach. We isolated bacteria from field cropped maize only. Strains were identified based on 16S rRNA gene sequencing. In particular, members of Actinobacteria, Bacteroidetes, Firmicutes and α- and γ-Proteobacteria were found. Species of two genus Pseudomonas and Bacillus were dominant among them. Higher diversity of EnB was found in plants collected from Kobierzyce, where we identified 35 species from 16 genera with 22 species uniquely found at this field. On the contrary, from maize leaves collected at Smolice we identified 24 species representing 10 genera with 10 species uniquely isolated from this field. However, none of species was common for all cultivars at both locations. Among isolated EnB six species only, Pseudomonas clemancea, Pseudomonasfluorescens, Bacillus megaterium, Bacillus simplex, Arthrobacter nicotinovorans and Arthrobacter nitroguajacolicus, were found in aboveground parts of the same cultivar grown on both tested fields. The fact that the same cultivars, sown from the same lots of seeds, under field conditions on two different locations were colonized with noticeably different associations of cultivable EnB suggest that cultivar genotype is an important factor selecting endophytic bacteria from local agro-environment. To our knowledge this is first report about the significant variation of diversity of cultivable endophytic bacteria inhabiting aboveground parts of the same maize cultivars grown at different locations. PMID:26373177

  14. Microbiological changes and biodiversity of cultivable indigenous bacteria in Sanbao larger yellow croaker (Pseudosciaena crocea), a Chinese salted and fermented seafood.

    Science.gov (United States)

    Zhang, He; Li, Yan; Xu, Kunhua; Wu, Jiajia; Dai, Zhiyuan

    2015-04-01

    Sanbao large yellow croaker is a kind of Chinese salted and fermented seafood processed by adding 50% of salt and fermenting at high temperature [around 30 °C] over 20 d. To get a comprehensive understanding of cultivable microorganism's diversity present in its fermentation, the chemical and microbial properties of this product, were detected initially, followed by identification of bacteria recovered from different fermentation periods using PCR-RFLP and 16S rRNA gene sequencing analysis. In total, 105 indigenous isolates were recovered with 3 different medium and majority of the isolates picked up from both MRS and MSA medium were finally clustered into the genus of Staphylococcus (S.). Among the 90 Staphylococci, S. xylosus, S. saprophyticus, and S. nepalensis were the most prevailing cultivable species recovered throughout the whole production process (70 isolates, 77.8%), while 5 other species, namely, S. aureus, S. vitulinus, S. sciuri, S. equorum, and S. succinus formed a minor fraction (20 isolates, 22.2%) of the Staphylococcus communities. Lactic acid bacteria, Pseudomonas, Proteus, and Bacillus constituted trivial populations in the initial period of the fermentation and then gave the way to the Staphylococcus immediately. High salt concentration used during the processing is like to have a pronounced influence on the microbial populations involved. Data obtained in this work could be referred in control and optimization of the fermentation process and selecting suitable strains for aquatic product fermentation. PMID:25874648

  15. Cuantificación de bacterias cultivables mediante el método de “Goteo en Placa por Sellado (o estampado Masivo”

    Directory of Open Access Journals (Sweden)

    Yolanda Elizabeth Morales-García

    2012-08-01

    Full Text Available Título en ingles: Quantification of cultivable bacteria by the “Massive Stamping Drop Plate” method Resumen: Cuando se desea cuantificar el número de bacterias presentes en múltiples muestras, los procedimientos de rutina suelen consumir mucho tiempo. En ese periodo las muestras podrían sufrir modificaciones en su población. En el presente trabajo se evaluó una metodología alternativa para cuantificar bacterias cultivables de forma masiva, rápida y económica en la que se implica el sellado, estampado o impresión de diluciones seriadas de muestras de diversa procedencia. El tiempo requerido para preparar 22 muestras para su sellado en placa es de 15 minutos. El método se basó en realizar diluciones seriadas (base 10 de las muestras líquidas originales contenidas en una placa multipozos con la ayuda de una pipeta multicanal. Después, con un replicador se tomó un volumen (aproximadamente 1,65 µl de muestra de cada pozo, que se inoculó por sellado en un medio de crecimiento gelificado de interés. Las placas se incubaron el tiempo necesario, se contó el número de colonias presentes en la dilución contable y se calculó el número de Unidades Formadoras de Colonia por mililitro (UFC/ml para cada muestra. La metodología se denominó “Goteo por Sellado en Placa Masivo” (GSPM y ha sido aplicada para cuantificar exitosamente bacterias provenientes de diferentes muestras de laboratorio, por ejemplo, de cultivos líquidos, muestras clínicas (como exudados y secreciones y bacterias presentes en la rizósfera de plantas de maíz. Sin embargo, la metodología GSPM podría aplicarse para contabilizar masivamente a bacterias de cualquier otra procedencia. Palabras clave: UFC; goteo en placa; plaqueo; vaciado en placa; GSPM. Abstract: In an attempt to quantify the number of bacteria present in a high number of samples, routine procedures are usually very time-consuming. During this period of time, bacterial population could be

  16. A disposable picolitre bioreactor for cultivation and investigation of industrially relevant bacteria on the single cell level

    OpenAIRE

    Grünberger, A.; Paczia, N.; Probst, C.; Schendzielorz, G.; Eggeling, L; S. Noack; Wiechert, W.; Kohlheyer, D.

    2012-01-01

    In the continuously growing field of industrial biotechnology the scale-up from lab to industrial scale is still a major hurdle to develop competitive bioprocesses. During scale-up the productivity of single cells might be affected by bioreactor inhomogeneity and population heterogeneity. Currently, these complex interactions are difficult to investigate. In this report, design, fabrication and operation of a disposable picolitre cultivation system is described, in which environmental conditi...

  17. Temporal Eukarya, Bacteria, and Archaea biodiversity during cultivation of an alkaliphilic algae, Chlorella vulgaris, in an outdoor raceway pond

    OpenAIRE

    Tisza Ann Szeremy Bell; Bharath ePrithiviraj; Wahlen, Brad D.; Matthew W Fields; Peyton, Brent M.

    2016-01-01

    Algal biofuels and valuable co-products are being produced in both open and closed cultivation systems. Growing algae in open pond systems may be a more economical alternative, but this approach allows environmental microorganisms to colonize the pond and potentially infect or outcompete the algal crop. In this study, we monitored the microbial community of an outdoor, open raceway pond inoculated with a high lipid-producing alkaliphilic alga, Chlorella vulgaris BA050. The strain C. vulgari...

  18. 一种分离培养硫酸盐还原菌的改进方法%A IMPROVED METHOD FOR ISLATION AND CULTIVATION OF SULFATE-REDUCING BACTERIA

    Institute of Scientific and Technical Information of China (English)

    万海清; 苏仕军; 葛长海; 万雪松; 朱家骅

    2003-01-01

    On the base of the characteristics of sulfate-reducing bacteria (SRB) growth and dish cultivated method, a new method for isolation and cultivation of SRB is established. It is dilution spread and repeat dish sandwish cultivated method with the exellence of dilution spread and embeded growth, and it can help separation and identification of SRB. The method has simple operation and less equipment. And using this method, the natural SRB drop was successfully gained, and small agar pieces containing SRB drop were acquired in easiness. The brief SRB transfering operation in strict anaerobic condition was in-deed realized. Fig 1, Ref 7.

  19. Oasis desert farming selects environment-specific date palm root endophytic communities and cultivable bacteria that promote resistance to drought

    KAUST Repository

    Cherif, Hanene

    2015-07-21

    Oases are desert-farming agro-ecosystems, where date palm (Phoenix dactyliferaL.) plays a keystone role in offsetting the effects of drought and maintaining a suitable microclimate for agriculture. At present, abundance, diversity and plant growth promotion (PGP) of date palm root-associated bacteria remain unknown. Considering the environmental pressure determined by the water scarcity in the desert environments, we hypothesized that bacteria associated with date palm roots improve plant resistance to drought. Here, the ecology of date palm root endophytes from oases in the Tunisian Sahara was studied with emphasis on their capacity to promote growth under drought. Endophytic communities segregated along a north-south gradient in correlation with geo-climatic parameters. Screening of 120 endophytes indicated that date palm roots select for bacteria with multiple PGP traits. Bacteria rapidly cross-colonized the root tissues of different species of plants, including the original Tunisian date palm cultivar, Saudi Arabian cultivars and Arabidopsis. Selected endophytes significantly increased the biomass of date palms exposed to repeated drought stress periods during a 9-month greenhouse experiment. Overall, results indicate that date palm roots shape endophytic communities that are capable to promote plant growth under drought conditions, thereby contributing an essential ecological service to the entire oasis ecosystem. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  20. Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere

    NARCIS (Netherlands)

    da Rocha, Ulisses Nunes; Andreote, Fernando Dini; de Azevedo, Joao Lucio; van Elsas, Jan Dirk; van Overbeek, Leo S.; Andreoti, F.D.

    2010-01-01

    The role of dominant bacterial groups in the plant rhizosphere, e.g., those belonging to the phyla Acidobacteria and Verrucomicrobia, has, so far, not been elucidated, and this is mainly due to the lack of culturable representatives. This study aimed to isolate hitherto-uncultured bacteria from the

  1. The Cultivation of Antagonistic Bacteria in Irradiated Sludge for Biological Control of Soft Rot Erwinias : Screening of Antagonistic Bacteria for biological Control of Soft Rot Erwinias

    International Nuclear Information System (INIS)

    Pure cultures of 57 bacterial isolates for antagonistic activity screening were isolated from three areas of soft rot infested vegetable soil and 58 isolates were obtained from commercial seed compost and seed compost product of Division of Soil and Water Conservation, Department of Land Development. A total of 115 bacterial isolates were evaluated for antagonizing activity against Erwinia carotovora subsp. atroceptica in vitro. Out of them, 18 isolates were antagonists by showing zone of inhibition ranging from 1 to 17 mm by diameter. Most of antagonistic bacteria were identified as Bacillus spp. whereas only one isolate was Pseudomonas vesicularis

  2. Artificial seed germination and seedling production ofZostera marina L. by salinity manipulation

    Institute of Scientific and Technical Information of China (English)

    LIU Yunlong; ZHANG Xuelei; SONG Wei; WANG Zongling

    2016-01-01

    Vast declines inZostera marina seagrass beds demand effective methods of rehabilitation. In this study, we developed a practical method by reducing salinity to induce seed germination followed with recovering salinity to facilitate seedling production ofZ. marina. The results showed thatZ. marina seeds collected from natural seawater (salinity 30) were induced to germinate at reduced salinities. Percent germination (GR) was higher and mean-time-to-germinate (MTG) was shorter at lower salinities. The highestGR and shortestMTG occurred at salinity 0 (deionized freshwater). After germination in freshwater, seeds could develop into seedlings at salinities 5–30 and continue the growth. Viability or development of germinated seeds was not significantly different during the 40 d of post-germination incubation at salinities 5–15 after 1–20 d of germination in freshwater. However, during the process of translating germinated seeds from salinity 0 and 5 to salinity 30, reducing the gradients of post-germination acclimation facilitated more seeds forming seedlings in less time. On average, after 60 d of static incubation, including 20 d in freshwater for germination followed with immediate shift to salinity 5 and increasing to salinity 30 at increment of 5 every two days until cultivation at constant salinity 30, 33% ofZ. marina seeds produced healthy seedlings. The results indicate that the salinity-manipulation based method of artificial germination and seedling production is practical and effective in supporting rehabilitation ofZ. marina bed.

  3. Molecular and cultivation-dependent analysis of metal-reducing bacteria implicated in arsenic mobilisation in south-east asian aquifers

    International Nuclear Information System (INIS)

    The reduction of sorbed As(V) to the potentially more mobile As(III) by As-respiring anaerobic bacteria has been implicated in the mobilisation of the toxic metalloid in aquifer sediments in SE Asia. However, there is currently only a limited amount of information on the identity of the organisms that can respire As(V) in these sediment systems. Here experiments are described that have targeted As(V)-respiring bacteria using cultivation-independent molecular techniques, and also more traditional microbiological approaches that have used growth media highly selective for organisms that can grow using arsenate as the sole electron acceptor supplied for anaerobic growth. The molecular techniques used have initially targeted DNA from microcosms displaying maximal rates of arsenate reduction, both with and without added electron donor. More recent studies from the authors' laboratory have used stable isotope probing techniques, targeting DNA from the active microbial fraction in microcosms labelled with [13C]acetate supplied as an electron donor for arsenate reduction. Phylogenetic analyses using a highly conserved genetic marker (the 16S rRNA gene) have suggested the involvement of Sulfurospirillum and Geobacter species in arsenate-respiration, and this has been supported further by complimentary experiments using more traditional microbiological techniques. Additional research required to clarify the role of these organisms in the mobilisation of As in situ are discussed

  4. Cultivation-Dependant Assessment, Diversity, and Ecology of Haloalkaliphilic Bacteria in Arid Saline Systems of Southern Tunisia

    OpenAIRE

    Darine El Hidri; Amel Guesmi; Afef Najjari; Hanen Cherif; Besma Ettoumi; Chadlia Hamdi; Abdellatif Boudabous; Ameur Cherif

    2013-01-01

    Haloalkaliphiles are polyextremophiles adapted to grow at high salt concentrations and alkaline pH values. In this work, we isolated 122 haloalkaliphilic bacteria upon enrichments of 23 samples from 5 distinct saline systems of southern Tunisia, growing optimally in media with 10% salt and at pH 10. The collection was classified into 44 groups based on the amplification of the 16S–23S rRNA internal transcribed spacers (ITS-PCR). Phylogenetic analysis and sequencing of the 16S rRNA genes allow...

  5. Cultivation-Dependant Assessment, Diversity, and Ecology of Haloalkaliphilic Bacteria in Arid Saline Systems of Southern Tunisia

    Directory of Open Access Journals (Sweden)

    Darine El Hidri

    2013-01-01

    Full Text Available Haloalkaliphiles are polyextremophiles adapted to grow at high salt concentrations and alkaline pH values. In this work, we isolated 122 haloalkaliphilic bacteria upon enrichments of 23 samples from 5 distinct saline systems of southern Tunisia, growing optimally in media with 10% salt and at pH 10. The collection was classified into 44 groups based on the amplification of the 16S–23S rRNA internal transcribed spacers (ITS-PCR. Phylogenetic analysis and sequencing of the 16S rRNA genes allowed the identification of 13 genera and 20 distinct species. Three gram-positive isolates showing between 95 and 96% of 16S rRNA sequence homology with Bacillus saliphilus could represent new species or genus. Beside the difference in bacterial diversity between the studied sites, several species ecological niches correlations were demonstrated such as Oceanobacillus in salt crust, Nesterenkonia in sand, and Salinicoccus in the rhizosphere of the desert plant Salicornia. The collection was further evaluated for the production of extracellular enzymes. Activity tests showed that gram-positive bacteria were mostly active, particularly for protease, lipase, DNase, and amylase production. Our overall results demonstrate the huge phenotypic and phylogenetic diversity of haloalkaliphiles in saline systems of southern Tunisia which represent a valuable source of new lineages and metabolites.

  6. Enrichment and cultivation of a sulfide-oxidizing bacteria consortium for its deploying in full-scale biogas desulfurization

    International Nuclear Information System (INIS)

    Operational experiences and strategies to get suitable chemolithoautotrophic sulfide-oxidizing biomass from activated sludge wastewater treatment plant for its deploying in a full-scale biogas desulfurization plant are described. An economic nutrient source was applied to foster microbial selection and rapid growth. Respirometry was implemented on full-scale installations to monitor the ability of the specialized bacteria consortium to oxidize reduced sulfur i.e. H2S. During the deployment in the full-scale desulfurization reactor, intermittent sulfide feed from biogas scrubbing was performed to accelerate the startup the desulfurization process. - Highlights: • A simple method for reaching high amounts of specialized sulfide-oxidizing bacterial consortium from activated sludge was developed. • The full-scale desulfurization process can be continuously monitored by respirometry allowing fast decision making if problems arise. • The dissolved sulfide concentration was estimated with an empirical correlation between measurements of ORP, dissolved oxygen and pH

  7. Variación espacial y estacional de grupos funcionales de bacterias cultivables del suelo de un bosque tropical seco en México

    Directory of Open Access Journals (Sweden)

    Noé Manuel Montaño

    2013-03-01

    Full Text Available Los bosques tropicales secos tienen una amplia heterogeneidad ambiental y por lo tanto se podría esperar una variación temporal y espacial en la abundancia y tipo de grupos bacterianos activos. Se evaluó, durante dos años consecutivos, el efecto de la estacionalidad de la lluvia sobre algunos grupos bacterianos cultivables y nutrimentos del suelo en dos posiciones topográficas (crestas vs laderas en el bosque tropical seco, Chamela Jalisco, México. La hipótesis fue que la variación temporal y espacial de la disponibilidad de recursos afectaría la abundancia de los grupos bacterianos funcionales (heterótrofas totales, celulolíticas, solubilizadores de fosfatos y nitrificantes del suelo. En las crestas, el suelo fue más orgánico y con mayor concentración de nutrimentos totales y C orgánico lábil que en la ladera, registrando más bacterias heterótrofas y solubilizadoras de fosfato. En ambas posiciones topográficas la concentración de C y nutrimentos, así como el número de bacterias heterótrofas y solubilizadoras de P, decrecieron de la estación seca a la lluviosa en ambos años. En contraste, las bacterias nitrificantes fueron mayores en el suelo de la ladera, y al igual que las celulolíticas, tuvieron un patrón estacional opuesto a las bacterias heterótrofas, asociado a la disminución del C lábil y de la calidad de la materia orgánica. En conclusión, se sugiere que el relieve, la estacionalidad y la variación inter-anual de la lluvia regulan interactivamente la relación entre el C disponible y la estructura de las comunidades bacterianas del suelo en el bosque tropical seco de Chamela.

  8. Endophytic Cultivable Bacteria of the Metal Bioaccumulator Spartina maritima Improve Plant Growth but Not Metal Uptake in Polluted Marshes Soils

    Science.gov (United States)

    Mesa, Jennifer; Mateos-Naranjo, Enrique; Caviedes, Miguel A.; Redondo-Gómez, Susana; Pajuelo, Eloisa; Rodríguez-Llorente, Ignacio D.

    2015-01-01

    Endophytic bacterial population was isolated from Spartina maritima tissues, a heavy metal bioaccumulator cordgrass growing in the estuaries of Tinto, Odiel, and Piedras River (south west Spain), one of the most polluted areas in the world. Strains were identified and ability to tolerate salt and heavy metals along with plant growth promoting and enzymatic properties were analyzed. A high proportion of these bacteria were resistant toward one or several heavy metals and metalloids including As, Cu, and Zn, the most abundant in plant tissues and soil. These strains also exhibited multiple enzymatic properties as amylase, cellulase, chitinase, protease and lipase, as well as plant growth promoting properties, including nitrogen fixation, phosphates solubilization, and production of indole-3-acetic acid (IAA), siderophores and 1-aminocyclopropane-1-carboxylate (ACC) deaminase. The best performing strains (Micrococcus yunnanensis SMJ12, Vibrio sagamiensis SMJ18, and Salinicola peritrichatus SMJ30) were selected and tested as a consortium by inoculating S. maritima wild plantlets in greenhouse conditions along with wild polluted soil. After 30 days, bacterial inoculation improved plant photosynthetic traits and favored intrinsic water use efficiency. However, far from stimulating plant metal uptake, endophytic inoculation lessened metal accumulation in above and belowground tissues. These results suggest that inoculation of S. maritima with indigenous metal-resistant endophytes could mean a useful approach in order to accelerate both adaption and growth of this indigenous cordgrass in polluted estuaries in restorative operations, but may not be suitable for rhizoaccumulation purposes. PMID:26733985

  9. Diversidad de bacterias cultivables con capacidad de degradar hidrocarburos de la playa de Caleta Córdova, Argentina

    Directory of Open Access Journals (Sweden)

    Graciela N. Pucci

    2011-05-01

    Full Text Available En el presente trabajo se estudiaron las comunidades bacterianas aisladas de agua de mar y sedimentos intermareales de Caleta Córdova, norte de Comodoro Rivadavia, Argentina. Tres sitios fueron muestreados estacionalmente entre los años 2005 y 2006; el primer sitio fue una playa pública, el segundo sitio cerca de un puerto pesquero y el tercero cerca de una boya de toma de petróleo. Las comunidades bacterianas fueron determinadas en base a las diferencias en la composición de ácidos grasos de membrana, las bacterias fueron identificadas por medio del Sistema Sherlock MIDI, y el potencial de las comunidades para la utilización de hidrocarburos por la mineralización de gasoil, petróleo, kerosene, aceite lubricante y nafta. Las mineralizaciones evidenciaron la capacidad de los microorganismos para la degradación de hidrocarburos en dos de los sitios estudiados. Se aislaron 251 cepas de las que se lograron identificar 124 correspondientes a 24 géneros y 40 especies; la más frecuente fue Pseudoalteromonas.

  10. Louisiana Marinas and Boat Launches, Geographic NAD83, LOSCO (2004) [marinas_LOSCO_2004

    Data.gov (United States)

    Louisiana Geographic Information Center — The dataset defines the location and supplemental information for marinas and boat launches in southern Louisiana. The boat launch database includes public and...

  11. Posveshtshenije Teatru / Marina Printseva ; interv. Eteri Kekelidze

    Index Scriptorium Estoniae

    Printseva, Marina

    2008-01-01

    Peterburi kunstniku Marina Printseva unikaalses tehnikas tekstiilpiltide (tikand, aplikatsioon, maal) näitus "Kui kaunis on see maailm!" Tallinnas hotell "Vana Viru" fuajees. Kuraator Olga Ljubaskina. Kunstnikuga tema loomingust

  12. Capítulo 6. La marina

    OpenAIRE

    Riviale, Pascal

    2015-01-01

    La marina francesa desempeñó, a todo lo largo del siglo xix, un considerable papel en la investigación arqueológica en el Perú. A tal punto que conviene consagrar a esta institución un capítulo entero para tratar de las diferentes facetas de su aporte científico. La participación de la Marina en la recolección de datos, exigida por el desarrollo de las ciencias —naturales y humanas—, fue hecha posible, desde luego, gracias a su presencia efectiva en todos los mares del mundo, ya fuese, como v...

  13. Changes of plasma membrane ATPase activity,membrane potential and transmembrane proton gradient in Kandelia candel and Avicennia marina seedlings with various salinities

    Institute of Scientific and Technical Information of China (English)

    ZHAO Zhong-qiu; ZHENG Hai-lei; ZHU Yong-guan

    2004-01-01

    The salt-secreting mangrove, Avicennia marina, and non-salt-secreting mangrove, Kandelia candel were cultivated in sand with various salinities(0 ‰, 10 ‰, 20 ‰, 30 ‰, 40 ‰) for 60 d. Plasma membrane vesicles of high-purity in leaves and roots of A.marina and K. candel seedlings were obtained by two-phase partitioning. The function of the plasma membranes, the activity of ATPase, membrane potential and transmembrane proton gradient, at various salinities were investigated. The results showed that within a certain range of salinity(A. marina and roots of K. candel: 0-30‰;leaves of K.candel: 0-20‰), the activity of ATPase increased with increasing salinity, while high salinity(above 30‰ or 20‰) inhibited ATPase activity. In comparison with A. marina, K. candel appeared to be more sensitive to salinity. The dynamics of membrane potential and transmembrane proton gradient in leaves and roots of A. marina and K. candel seedlings were similar to that of ATPase. When treated directly by NaCl all the indexes were inhibited markedly: there was a little increase within 0-10‰(K. candel) or 0-20‰(A. marina) followed by sharp declining. It indicated that the structure and function of plasma membrane was damaged severely.

  14. Saint Marina: the protectress of nephrology.

    Science.gov (United States)

    Eftychiadis, A C; Marketos, S G

    1999-01-01

    Saint virgin and martyr Marina (Margarita) of Antioch in Pisidia (255-270) is recognized as the patron saint of kidney sufferers and the protectress of nephrology. Beginning in the 13th century she heals in particular patients suffering from nephropathies, pregnant women having a difficult childbirth, barren women and sickly children. She protects the patients from every side effect and complication. Saint Marina is represented in hagiography as a victor, defeating the dragon satan, holding a hammer or a cross and wearing a belt around her back in the area of kidneys. According to writers, artists and sculptors the belt is the perceivable means of Saint Marina for the miraculous recovery from and healing of kidney diseases. Therefore, kidney sufferers and pregnant women put belts upon her relics for blessing and then wore them. From the Middle Ages and Renaissance and up to the contemporary period Saint Marina (Margarita) was considered the patron saint of kidney sufferers. Justifiably she is recognized by the modern medical world as the protectress of nephrology. PMID:10213803

  15. Eelgrass (Zostera marina) tolerance to anoxia

    DEFF Research Database (Denmark)

    Pulido Pérez, Cristina; Borum, Jens

    The tolerance of eelgrass (Zostera marina L.) to anoxia was assessed experimentally to evaluate the potential role of short-term anoxia on eelgrass performance. Eelgrass ramets (terminal leaf bundles with rhizomes and roots) were submerged in anoxic seawater for variable periods of time (0.5 to 48...

  16. Antibacterial activity of extracts from Zostera marina against pathogens of Apostichopus japonicus skin ulceration disease

    Science.gov (United States)

    Liu, Yang; Jiang, Guoliang; Wu, Zhiqiang

    2010-03-01

    The purpose of this study was to investigate the antibacterial activity of extracts from Zostera marina against the pathogens of Apostichopus japonicus skin ulceration disease. When 95% ethanol (v/v) solvent was used to extract Zostera marina at 50°C, aqueous extract (ZA) showed obvious bacteriostatic effects on the tested bacterial strains (inhibition halo diameters between 8.23 mm and 13.62 mm), whereas the ethyl acetate extract (ZE) was almost inactive. The minimal inhibitory concentration (MIC) of ZA against four pathogens were homogeneous at 12.8 g L-1. ZA components were analyzed by thin layer chromatography (TLC) assay and six fractions were obtained. In another study, the six fractions showed inhibitory effects against the tested bacteria while their functions seemed to counteract the ZA activity.

  17. Underwater SLAM in a marina environment

    OpenAIRE

    Ribas Romagós, David; Ridao Rodríguez, Pere; Tardós, Juan Domingo; Neira Parra, José

    2007-01-01

    This paper describes a navigation system for autonomous underwater vehicles (AUVs) in partially structured environments, such as dams, harbors, marinas or marine platforms. A mechanical scanning imaging sonar is used to obtain information about the location of planar structures present in such environments. A modified version of the Hough transform has been developed to extract line features, together with their uncertainty, from the continuous sonar dataflow. The information obtained is inco...

  18. Legal aspects of marina development and operation

    OpenAIRE

    Dromgoole, Sarah; Gaskell, Nicholas; Grant, Malcolm

    1993-01-01

    There is in Britain no co-ordinated legal framework regulating river and coastal zone management and use. This chapter attempts to establish an outline structure, drawing together the provisions relating to the planning, building and operation of marinas. There are problems arising from the distinct jurisdictional boundaries affecting land, foreshore, harbours, seabed, rivers and estuaries, each of which has its own structure of land ownership and is subject to different systems of regulat...

  19. Marina Laikjõe : palm on eestlasele puhkuse sünonüüm / Marina Laikjõe

    Index Scriptorium Estoniae

    Laikjõe, Marina, 1967-

    2003-01-01

    Reisikorraldusfirma Domina World Traveli tegevjuht Marina Laikjõe annab ülevaate eestlaste reisimisharjumustest, populaarsematest sihtkohtadest ning prognoosib võimalikke trende Eesti turismiturul.

  20. Actividad antibacteriana y antifúngica de extractos de algas marinas venezolanas

    OpenAIRE

    Nurby Ríos; Gerardo Medina; José Jiménez; Carlos Yánez; Maria Y. García; Maria L. Di Bernardo; Maria Gualtieri

    2011-01-01

    En este trabajo se evaluaron las propiedades bioactivas antibacterianas y antimicóticas de 33 extractos (etanol, diclorometano, hexano) obtenidos de 11 especies de algas marinas recolectadas en las localidades de San Juan de Los Cayos y Chichiriviche, Estado Falcón, Venezuela. La actividad antibiótica y antimicótica de los extractos se evaluó mediante la aparición de halos de inhibición contra bacterias Gram positivas (Staphylococ- cus aureus), Gram negativas (Pseudomona aeruginosa, Klebsiell...

  1. Antioxidant and antimicrobial activity of a mangrove plant Avicennia marina (Forsk.)

    Institute of Scientific and Technical Information of China (English)

    Pooja Moteriya; Ashish Dalsaniya; Sumitra Chanda

    2015-01-01

    Objective: To evaluate the antioxidant and antimicrobial potential of different parts (leaf, stem and pneumatophore) of a mangrove plant Avicennia marina (Forsk.) Vierh (Avicenniaceae). Methods: The extraction was done by cold percolation method using solvents of hexane, ethyl acetate, acetone, methanol and water. Total phenol and flavonoid content were measured by Folin-Ciocalteu’s reagent and aluminium chloride colorimetric method respectively. The antioxidant activity was evaluated using antioxidant assays of 2,2-diphenyl-1-picrylhydrazyl free radical scavenging activity, superoxide radical scavenging assay, 2,2’-azino-bis-(3-ethyl) benzothiazoline-6-sulfonic acid, ferric reducing antioxidant power and reducing capacity assessment. The antibacterial activity was done by agar well diffusion method against four Gram-positive, four Gram-negative bacteria and four fungi. Results: Different antioxidant assays showed different levels of activity in different parts and different solvent extracts. Overall, acetone extract of stem showed the best antioxidant activity. The Gram-positive bacteria were more susceptible than Gram-negative bacteria and fungi. Conclusions: The results indicated extract of Avicennia marina can be used as a promising source of natural antioxidant.

  2. Contaminación marina en el Perú.

    OpenAIRE

    Guillen., Oscar; Ashtu, Victor; Aquino, Rosa

    1980-01-01

    Este informe muestra las principales causas de contaminación marina debido a los desechos domésticos e industriales, hidrocarburos de petroleo a fin de mostrar la situación actual de la contaminación marina.

  3. Armastus teeb tugevaks / Marina Laikjõe ; interv. Verni Leivak

    Index Scriptorium Estoniae

    Laikjõe, Marina, 1967-

    2008-01-01

    Turismifirma Tez Tour tegevjuht ning reisifirma Travel-In juht Marina Laikjõe vastab küsimustele, mis puudutavad tema tegevust ja karjääri turisminduses, suhteid kolleegidega ning perekonna toetust raske haigusega võitlemise ajal. Kommenteerivad Reet Kivi, Tiit Pärnik. Lisa: Marina Laikjõe

  4. Desarrollo de sistemas de alerta y de métodos de identificación y detección de toxinas marinas

    OpenAIRE

    Rodríguez Louro, Paula

    2012-01-01

    Las toxinas marinas son productos secundarios con actividad tóxica, originados por el metabolismo de algunas especies de microalgas fitoplanctónicas (dinoflagelados, diatomeas y cianobacterias) y también ciertas bacterias. Las toxinas son concentradas preferentemente por la filtración de los bivalvos y encontradas en moluscos, peces, crustáceos y en diversos animales acuáticos como consecuencia de su distribución en la cadena alimentaria marina. El incremento en la frecuencia de las florac...

  5. Marina Kaljurand : Venemaad ei tohi karta! Siin pole midagi karta! / Marina Kaljurand ; interv. Jaanus Piirsalu

    Index Scriptorium Estoniae

    Kaljurand, Marina, 1962-

    2008-01-01

    Intervjuu kolm aastat Moskvas töötanud Eesti suursaadiku Marina Kaljurannaga, kes vastab küsimustele, mis puudutavad Eesti-Vene suhteid, saadikutööd, diplomaatiat, aprillirahutusi, naiste osakaalu diplomaatide seas ja erilisi suhteid patriarh Aleksius II-ga

  6. Isolation of plant-growth-promoting and metal-resistant cultivable bacteria from Arthrocnemum macrostachyum in the Odiel marshes with potential use in phytoremediation.

    Science.gov (United States)

    Navarro-Torre, S; Mateos-Naranjo, E; Caviedes, M A; Pajuelo, E; Rodríguez-Llorente, I D

    2016-09-15

    Arthrocnemum macrostachyum is a halophyte naturally growing in southwest coasts of Spain that can tolerate and accumulate heavy metals. A total of 48 bacteria (30 endophytes and 18 from the rhizosphere) were isolated from A. macrostachyum growing in the Odiel River marshes, an ecosystem with high levels of contamination. All the isolates exhibited plant-growth-promoting (PGP) properties and most of them were multiresistant to heavy metals. Although the presence of heavy metals reduced the capability of the isolates to exhibit PGP properties, several strains were able to maintain their properties or even enhance them in the presence of concrete metals. Two bacterial consortia with the best-performing endophytic or rhizospheric strains were selected for further experiments. Bacterial inoculation accelerated germination of A. macrostachyum seeds in both the absence and presence of heavy metals. These results suggest that inoculation of A. macrostachyum with the selected bacteria could ameliorate plant establishment and growth in contaminated marshes. PMID:27349383

  7. La dinámica marina

    OpenAIRE

    Torres Pérez-Hidalgo, Trinidad José de

    2003-01-01

    En este trabajo se realiza una revisión general de los aspectos generales de la dinámica marina, especialmente centrado en playas y la parte más cercana a la costa de la plataforma. Es evidente que la dinámica de erosión, transporte y depósito de sedimentos, jugará un papel fundamental en la removilización de contaminantes. Formas de acumulación más profundas, jugarán un papel fundamental como reservónos de contaminantes. También es importante, ...

  8. Marina Martín Garcia

    OpenAIRE

    De Blaeij, T.; Van Manen, T.R.W.; Van Mechelen, J.; Pijpers, R.; Pleijter, G.; Rubke, T.

    2011-01-01

    Isla Martín Garcia is founded on a rock outcrop in the Río de la Plata which is a natural protected area between Argentina and Uruguay. Due to the extension of the runway at the local airport, wetlands between Isla Timoteo Domínguez and Isla Martín Garcia developed during the last decades. The bay, where the old port was located, was loaded with sediment. After the waters between the two islands sedimented, Isla Hércules is formed and a channel is created. For the location of the marina, thre...

  9. Bioaccumulation of trace elements by Avicennia marina

    OpenAIRE

    Kandasamy Kathiresan; Kandasamy Saravanakumar; Pandiyan Mullai

    2014-01-01

    Objective: To analyze the concentrations of 12 micro-nutrients (Al, B, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn) in different plant parts of Avicennia marina and its rhizosphere soil of the south east coast of India. Methods: The samples were acid digested, then analyzed by using inductively coupled plasma system (ICP-Optical Emission Spectrophotometer). Results: Levels of metals were found in the decreasing order: Cd>Co>Ni>Pb>B >Cr>Zn>Mg>Mn>Cu>Fe>Al. The soil held m...

  10. Nuevos registros de clorofitas marinas para Cuba

    OpenAIRE

    A. Moreira; Fujii, M.T.; Suárez, A. M.; Wynne, M.J.

    2013-01-01

    A partir de muestras colectadas en la bahía de Cienfuegos y de Santa Lucía (Pinar del Río), se identificaron dos nuevos registros de macroalgas marinas (clorofitas) para Cuba: Cladophora blomquistii C. Hoek y Udotea fibrosa D. S. Littler & M. M. Littler. C. blomquistii se registra por primera vez para la región del Caribe ya que se había consignado solo para lagunas costeras de la Florida, y la parte noreste del golfo de México. Se ofrecen además comentarios sobre la taxonomía, ...

  11. Jenis-Jenis Bakteri Yang Berasosiasi Pada Proses Dekomposisi Serasah Daun Avicennia. Marina (Forsk) Vierh Setelah Aplikasi Fungi Aspergillus SP., Curvularia SP., Penicillium SP. Pada Beberapa Tingkat Salinitas Di Desa Sicanang Belawan

    OpenAIRE

    Wahyuni, Ika

    2011-01-01

    The research on The Variety of Bacteria which Asociated on the Decomposition Process of Avicennia marina Leaf Litter After Aplicated Aspergillus sp., Curvularia sp., and Penicillium sp. in the some Salinity Level had a purpose to know the diversity of bacteria. The research had done at Microbiology Laboratory of FMIPA USU Medan and at the mangrove area of Sicanang-Belawan did began at december 2009 until june 2010. The results of the research indicated that totally 24 species of bacteria whic...

  12. Characterization of Carbofuran Degrading Bacteria Obtained from Potato Cultivated Soils with Different Pesticide Application Records / Caracterización de Bacterias Degradadoras de Carbofuran Obtenidas de Suelos Bajo Cultivo de Papa y con Diferente Histor

    Directory of Open Access Journals (Sweden)

    Castellanos Rozo José

    2013-08-01

    Full Text Available Abstract. Eighty-two bacterial isolates with potential Carbofurandegradation activity (Furadan®3SC were obtained from soilscultivated with the potato variety Unica (Solanum tuberosumin Silos, Norte de Santander (Colombia, with different recordsof pesticide application. The bacteria were selected for theirability to grow at 25 °C for 72 h in media containing 200 mgL-1 of analytical Carbofuran as the sole source of carbon and/or nitrogen. The results showed that ten isolates, 12% of those obtained, grew in the culture media. Eight of theses isolates were obtained from soils with a high pesticide exposure (eight years of application, and identified, by macroscopic, microscopic and biochemical characteristics, as Sphingomonas paucimobilis. The other two were obtained from soils with three years and one year of application and were identified as Pseudomonas aeruginosa and Yersinia pseudotuberculosis, respectively. Subsequently, these bacteria were tested for their ability of hydrolytic degradation of Carbofuran; the results show that the pesticide was degraded only by the isolates of Sphingomonas paucimobilis for 72 h. The results obtained in the in vitro tests show the bacterial metabolic capacity for the biodegradation of Carbofuran, highlighting the potential use of the bacteria for future field evaluation tests in places where residues of the pesticide may exist, as an alternative to control the impact that N-methyl carbamate pesticides have on the environment and human health. / Resumen. Ochenta y dos aislamientos bacterianos con actividad potencial de degradación de Carbofuran (Furadan®3SC, fueron obtenidos de suelos, cultivados con papa (Solanum tuberosum variedad Única, del municipio de Silos, Norte de Santander (Colombia con diferente historia de aplicación del plaguicida. Las bacterias fueron seleccionadas por su capacidad para crecer a 25 °C durante 72 h, en medios de cultivo conteniendo 200 mg L-1 de Carbofuran analítico como

  13. St Marina and Satan: A Syriac dialogue poem

    OpenAIRE

    Brock, Sebastian P.

    2008-01-01

    Syriac authors took over and adapted the ancient Mesopotamian genre of precedence dispute, transforming it into a dispute or dialogue, with theological overtones, which is normally between biblical characters. A small number of these dialogue poems concern saints, rather than biblical characters, and it is one of these, where the protagonists are St Marina and Satan, which is re-published here in a critical edition, together with three soghyatha which concern the life of St Marina. All are ta...

  14. Vegetative characteristics of Avicennia marina on the artificial inlet

    OpenAIRE

    AKBAR GHASEMI; HAMID JALILVAND; SOHEIL MOHAJERI-BORAZJANI

    2012-01-01

    The purpose of this project is attempt to ecological development of Avicennia marina in hyper saline condition. During 2001 and 2002 a restoration mangrove project " planting A. marina in artificial inlet in Bushehr Province, Iran" was carried out in Agriculture &Natural resources research center of Bushehr province in Sabkha lands. Some the vegetative characteristics of such as height, diameter and crown diameter in two aspects were recorded in 2012. To investigate physico-chemical propertie...

  15. Bioaccumulation of trace elements by Avicennia marina

    Directory of Open Access Journals (Sweden)

    Kandasamy Kathiresan

    2014-11-01

    Full Text Available Objective: To analyze the concentrations of 12 micro-nutrients (Al, B, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn in different plant parts of Avicennia marina and its rhizosphere soil of the south east coast of India. Methods: The samples were acid digested, then analyzed by using inductively coupled plasma system (ICP-Optical Emission Spectrophotometer. Results: Levels of metals were found in the decreasing order: Cd>Co>Ni>Pb>B >Cr>Zn>Mg>Mn>Cu>Fe>Al. The soil held more levels of metals than plant parts, but within the permissible limits of concentration. Bark and root accumulated higher levels of trace elements in a magnitude of 10-80 folds than other plant parts. The overall bioaccumulation factor in the sampling sites of Vellar, Pichavaram and Cuddalore was 2.88, 1.42 0.47 respectively. Essential elements accumulate high in mature mangroves forest while non-essential elements accumulate high in the industrially polluted mangroves. Conclusions: The ratio between essential and non-essential elements was found higher in young mangrove forest than that in mature mangrove forest and polluted mangrove areas. Thus, the ratio of accumulation can be used as an index of the growth and pollution status of mangroves.

  16. Bioaccumulation of trace elements by Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    Kandasamy Kathiresan; Kandasamy Saravanakumar; Pandiyan Mullai

    2014-01-01

    Objective: To analyze the concentrations of 12 micro-nutrients (Al, B, Cd, Co, Cr, Cu, Fe, Mg, Mn, Ni, Pb, and Zn) in different plant parts of Avicennia marina and its rhizosphere soil of the south east coast of India. Methods: The samples were acid digested, then analyzed by using inductively coupled plasma system (ICP-Optical Emission Spectrophotometer). Results: Levels of metals were found in the decreasing order: Cd>Co>Ni>Pb>B>Cr>Zn>Mg>Mn>Cu>Fe>Al. The soil held more levels of metals than plant parts, but within the permissible limits of concentration. Bark and root accumulated higher levels of trace elements in a magnitude of 10-80 folds than other plant parts. The overall bioaccumulation factor in the sampling sites of Vellar, Pichavaram and Cuddalore was 2.88, 1.42 0.47 respectively. Essential elements accumulate high in mature mangroves forest while non-essential elements accumulate high in the industrially polluted mangroves. Conclusions:The ratio between essential and non-essential elements was found higher in young mangrove forest than that in mature mangrove forest and polluted mangrove areas. Thus, the ratio of accumulation can be used as an index of the growth and pollution status of mangroves.

  17. Tres grandes plataformas marinas Mar del Norte

    Directory of Open Access Journals (Sweden)

    Soulas, R.

    1978-03-01

    Full Text Available This article analyzes the different building stages of three large sea platforms. After studying the structure's main characteristics, preparing scale models and calculating ail the elements, platform construction was carried out in three stages: — Dry-dock construction of the hull base. — Installation in the water and finishing the structure. — Immersion and bridge installation. Finally, the necessary operations to move the platform to its definite location were carried out. The structures are formed by a parallelepiped hull of reinforced concrete, divided into compartments by means of vertical orthogonals panels on top of which 2 or 4 piles are placed to support the bridge.

    En este artículo se analizan las diversas etapas en la realización de tres grandes plataformas marinas. Después de un estudio de las características principales de la estructura, ensayos en modelo reducido y cálculo de todos los elementos, se procede a la construcción de las plataformas en tres fases: — Construcción en seco de la base del casco. — Colocación en el agua y acabado de la estructura. — Inmersión y colocación del puente. Por último, se realizan las operaciones necesarias para llevar la plataforma a su ubicación definitiva. Las estructuras están formadas por un casco paralelepipédico de hormigón armado, dividido en compartimientos mediante tabiques verticales ortogonales y sobre el que se han colocado 2 ó 4 pilas que soportan el puente.

  18. Calidad del agua en marinas pequeñas

    OpenAIRE

    Fuentes Mariles, Óscar Arturo; Osnaya Romero, Javier; Magaña Melgoza, Pedro A.

    1997-01-01

    Se describe un método para calcular la concentración de un contaminante o bien la concentración de oxígeno disuelto (OD) y la demanda bioquímica de oxígeno (DBO) para una marina donde existe un mezclado completo de las sustancias en sus aguas. Los resultados del método permiten analizar la calidad del agua, revisar el tamaño de la marina, evaluar las consecuencias de la descarga de un contaminante, estimar la magnitud de bombeos para reducir la concentración de contaminantes, etc. También se ...

  19. IDENTIFICATION OF BACTERIA IN LATEX PAINTS

    Directory of Open Access Journals (Sweden)

    Rojas, J.

    2008-01-01

    Full Text Available The bacteria are prokaryote organisms with a high capacity to colonize many types of habits. This research was developed with the object to identify extremophiles bacteria presents in latex paint. The bacteria were cultivated in culture mediums TSA, Blood Agar, Mc Conkey and finally the biochemical proof API-NF® for bacteria's isolation and identification, respectively. Characterization showed bacterial profile of Pasteurella sp. Hypothesis that could be found extremophiles bacteria in latex paint were demonstrated.

  20. Susceptibility of fish to Chattonella marina is determined by its tolerance to hypoxia.

    Science.gov (United States)

    Shen, Min; Xu, Jingliang; Chan, Alice K Y; Au, Doris W T

    2011-01-01

    The harmful alga Chattonella marina has caused massive fish kills and economic losses worldwide. However, the fish kill mechanisms by C. marina have not been identified. The present study has confirmed that a significant elevation of blood osmolality is the universal response in moribund fish exposed to C. marina and the possible reasons leading to contradictory reports were identified. Both osmotic distress and respiratory impairment are important mechanisms leading to fish kill by C. marina. The susceptibility of marine fish to C. marina appears to be inversely related to their tolerance to hypoxia, with the hypoxia intolerant goldlined seabream being the most susceptible, and the hypoxia tolerant green grouper being the most tolerant to C. marina. Further studies in the marine medaka (Oryzias melastigma) showed that fish susceptibility to C. marina is directly related to susceptibility of the fish to hypoxia, but not related to its tolerance to hypersalinity stress. PMID:21704342

  1. Rumen bacteria

    International Nuclear Information System (INIS)

    The rumen is the most extensively studied gut community and is characterized by its high population density, wide diversity and complexity of interactions. This complex, mixed microbial culture is comprised of prokaryote organisms including methane-producing archaebacteria, eukaryote organisms, such as ciliate and flagellate protozoa, anaerobic phycomycete fungi and bacteriophage. Bacteria are predominant (up to 1011 viable cells per g comprising 200 species) but a variety of ciliate protozoa occur widely (104-106/g distributed over 25 genera). The anaerobic fungi are also widely distributed (zoospore population densities of 102-104/g distributed over 5 genera). The occurrence of bacteriophage is well documented (107-109 particles/g). This section focuses primarily on the widely used methods for the cultivation and the enumeration of rumen microbes, especially bacteria, which grow under anaerobic conditions. Methods that can be used to measure hydrolytic enzymes (cellulases, xylanases, amylases and proteinases) are also described, along with cell harvesting and fractionation procedures. Brief reference is also made to fungi and protozoa, but detailed explanations for culturing and enumerating these microbes is presented in Chapters 2.4 and 2.5

  2. Marina Abramović on kohal / Bianka Marran

    Index Scriptorium Estoniae

    Marran, Bianka

    2010-01-01

    Jugoslaavia kunstniku Marina Abramovići performance'itest. Pikemalt tema teosest "The Artist is Present" New Yorgi Moodsa Kunsti Muuseumis 14. märtsist 31. maini 2010. Koostööst saksa fotograafi ja performance'ikunstniku Ulay'ga (kodanikunimi Frank Uwe Laysiepen)

  3. Rapid increase in copper concentrations in a new marina, San Diego Bay.

    Science.gov (United States)

    Biggs, Trent W; D'Anna, Heather

    2012-03-01

    Concentrations of copper in water rose rapidly following the introduction of boats to a new marina in San Diego Bay. Two months after the marina reached half its capacity, a majority of water samples exceeded chronic and acute criteria for dissolved copper, and copper concentrations in several samples exceeded the highest concentrations observed in another marina that has been listed as an impaired water body. A box model suggested that a small fraction of the leached copper was sequestered in sediment. Copper concentrations in water entering the marina from the bay was more than half the chronic concentration limit, so only 50% of marina boat capacity could be accommodated without exceeding the chronic criterion more than 50% of the time. Copper concentrations in water may increase rapidly following boat introduction in small marinas, but could return to pre-introduction levels by controlling boat numbers or reducing use of copper-based paints. PMID:22245437

  4. Expression and characterization analysis of type 2 metallothionein from grey mangrove species (Avicennia marina) in response to metal stress

    Energy Technology Data Exchange (ETDEWEB)

    Huang Guoyong, E-mail: huang_gyh@sina.com [Key Laboratory of Tropical Marine Environmental Dynamics, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301 (China); State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640 (China); Wang Youshao [Key Laboratory of Tropical Marine Environmental Dynamics, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301 (China)

    2010-08-01

    Metallothioneins (MTs) are a family of low-molecular-weight cysteine-rich proteins and are thought to play possible roles in metal metabolism or detoxification. To evaluate the roles of metallothioneins in metal homeostasis or tolerance in Avicennia marina, a real-time quantitative PCR protocol was developed to directly evaluate the expression of AmMT2 mRNA, when A. marina seedlings were exposed to different concentrations of zinc (Zn), copper (Cu) or lead (Pb) for 3 and 7 d. Real-time quantitative PCR results indicated that the regulation of AmMT2 mRNA expression by Zn, Cu and Pb was strongly dependent on concentration and time of exposure. A significant increase in the transcripts of AmMT2 gene was also found in response to Zn, Cu and Pb, at least under some experimental conditions. When AmMT2 was overexpressed in Escherichia coli BL21 as a carboxy-terminal extension of glutathione-S-transferase (GST), the transgenic bacteria showed an increased tolerance to Zn, Cu, Pb and Cd exposure as compared to control strains. Moreover, GST-AmMT2 was purified from E. coli cells grown in the presence of 400 {mu}M Zn, Cu, Pb or Cd. The purified GST-AmMT2 fusion protein could bind higher levels of all four metals than GST alone. Taken together, these data support the hypothesis that AmMT2 may be involved in processes of metal homeostasis or tolerance in A. marina.

  5. The MARINA model (Model to Assess River Inputs of Nutrients to seAs)

    OpenAIRE

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-01-01

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for...

  6. Who is Oxyrrhis marina? Morphological and phylogenetic studies on an unusual dinoflagellate

    OpenAIRE

    Lowe, Christopher D; Keeling, Patrick J.; Martin, Laura E.; Watts, Phill C; Montagnes, David

    2010-01-01

    Abstract Oxyrrhis marina is a well studied and common protist, used model to a range of ecological processes. Further, as a result of unusual cytological and genetic features, Oxyrrhis is increasingly a target for the study of evolutionary development within the Alveolata. However, morphological and phylogenetic data suggest that O. marina represents multiple species. As different research groups employ different O. marina isolates, the context in which comparisons between isola...

  7. Auto toxicity of avicennia marina (forsk.) vierh in pakistan

    International Nuclear Information System (INIS)

    During field survey it was observed that despite the presence of full sunlight mangrove forests show gaps or small number of stunted seedlings. These observations leaded to consider evaluation of autotoxicity of A.marina, therefore a glasshouse experiment was conducted to observe the possible allelopathic effects of leaf and pneumatophore extracts of Avicennia marina on its own seedling survival and growth. Two different types of soil with a total of five treatments of leaves and pneumatophores were used including control amid five replicates. The results showed that the extracts from Avicennia leaves and pneumatophores had inhibitory effects on it's own growth. The leaf extracts showed stronger allelopathic effects than pneumatophore extracts on root length and dry weight while pneumatophore extracts had greater allelopathic effects on shoot height. Therefore, it may also be concluded that besides shade, allelopathy may be responsible for lack of Avicennia seedlings under its own mother plant. (author)

  8. IDENTIFICATION OF BACTERIA IN LATEX PAINTS

    OpenAIRE

    Rojas, J

    2008-01-01

    The bacteria are prokaryote organisms with a high capacity to colonize many types of habits. This research was developed with the object to identify extremophiles bacteria presents in latex paint. The bacteria were cultivated in culture mediums TSA, Blood Agar, Mc Conkey and finally the biochemical proof API-NF® for bacteria's isolation and identification, respectively. Characterization showed bacterial profile of Pasteurella sp. Hypothesis that could be found extremophiles bac...

  9. Conjuring Life: Magic in the Poetics of Marina Tsvetaeva

    OpenAIRE

    Lane, Tora

    2013-01-01

    This article discusses the notion of magic in the poetics of Marina Tsvetaeva (1892–1941) against the backdrop of romanticism and Russian modernism. Magic is related to the poet’s explorations of folklore, and also to Romantic, symbolist and futurist invocations of it. Concepts of magic are central to Tsvetaeva’s poetics; she considers conjuration to be a property of language that facilitates contact with the demonic, elemental and natural aspects of the world. These elemental ...

  10. Blue carbon stocks in Baltic Sea eelgrass (Zostera marina) meadows

    OpenAIRE

    Röhr, Maria Emilia; Boström, Christoffer; Canal-Vergés, Paula; Holmer, Marianne

    2016-01-01

    Although seagrasses cover only a minor fraction of the ocean seafloor, their carbon sink capacity account for nearly one-fifth of the oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. We sampled 10 eelgrass (Zostera marina) meadows in Finland and 10 in Denmark to explore the seagrass carbon stocks (Corg stock) and the carbon accumulation (Corg accumulation) in the Baltic Sea area. The study sites represent a gradient from sheltered to ex...

  11. The protozoa dinoflagellate Oxyrrhis marina contains selenoproteins and the relevant translation apparatus

    International Nuclear Information System (INIS)

    In the phylogenetic tree, selenoproteins and the corresponding translation machinery are found in Archaea, Eubacteria, and animals, but not in fungi and higher plants. As very little is known about Protozoa, we searched for the presence of selenoproteins in the primitive dinoflagellate Oxyrrhis marina, belonging to the Protoctista kingdom. Four selenoproteins could be obtained from O. marina cells cultured in the presence of 75Se. Using O. marina or bovine liver cytosolic extracts, we could serylate and selenylate in vitro total O. marina tRNAs. Moreover, the existence of a tRNASec could be deduced from in vivo experiments. Lastly, an anti-serum against the specialized mammalian translation elongation factor mSelB reacted with a protein of 48-kDa molecular mass. Altogether, our data showed that O. marina contains selenoproteins and suggests that the corresponding translation machinery is related to that found in animals

  12. The Phenomenon of the Marina Development to Support the European Model of Economic Development

    Directory of Open Access Journals (Sweden)

    Joanna Kizielewicz

    2013-09-01

    Full Text Available The development of marinas on the seas, rivers, lakes and canals of Europe occurs in two different forms: (1 as a private investment project, and (2 as an urban municipal investment. Both forms of investment and development of marinas satisfy the criteria of entrepreneurship, which is important for each global and European economy. The purpose of this research is explanation of the possibilities for development of marinas and their immediate and distant destination which supports the development of the local economy. The scientific and research achievements were applied and, for the purpose of transparency, a case study showing several marinas and the examples of two basic models of development are presented. Structurally, this research consists of two parts, namely (1 a theoretical part, where a definition of nautical tourism and its classification are presented and (2 the development of specific indicators of marinas in Europe are explored.

  13. El Instituto Hidrográfico de la Marina

    OpenAIRE

    Pérez Carrillo de Albornoz, Francisco J.

    2002-01-01

    Not available

    Se expone en este artículo la amplia labor que desarrolla el Instituto Hidrográfico de la Marina (IHM) y su participación en múltiples programas y proyectos nacionales e internacionales, representando a España y manteniendo relaciones permanentes de colaboración con diversas Organizaciones, Comisiones y Comités de carácter supranacional. Tras una síntesis histórica del IHM, cuyos orígenes en el Padrón Real de 1508 le otorgan la rimacía mundial como Instit...

  14. Digital.CSIC en el Instituto de Investigaciones Marinas

    OpenAIRE

    Rodríguez de Diego, María

    2014-01-01

    Desde el año 2008 la biblioteca del Instituto de Investigaciones Marinas (IIM) ha realizado diversas actividades para dar a conocer el repositorio institucional entre los investigadores del centro, animándoles a enviar sus trabajos una vez publicados. Las ventajas innegables que proporciona el acceso abierto a los resultados de investigación, por su inmediatez y el aumento de la visibilidad y del impacto, así como la eliminación de las barreras económicas que dificultan el acceso a la informa...

  15. Actividad antibacteriana y antifúngica de extractos de algas marinas venezolanas

    Directory of Open Access Journals (Sweden)

    Nurby Ríos

    2011-07-01

    Full Text Available En este trabajo se evaluaron las propiedades bioactivas antibacterianas y antimicóticas de 33 extractos (etanol, diclorometano, hexano obtenidos de 11 especies de algas marinas recolectadas en las localidades de San Juan de Los Cayos y Chichiriviche, Estado Falcón, Venezuela. La actividad antibiótica y antimicótica de los extractos se evaluó mediante la aparición de halos de inhibición contra bacterias Gram positivas (Staphylococ- cus aureus, Gram negativas (Pseudomona aeruginosa, Klebsiella pneumoniae, Escherichia coli y el hongo Candida albicans. De los 33 extractos ensayados sólo 17 presentaron actividad antibacteriana (5 con etanol, 6 con diclorometano y 6 con hexano, resultando activos 14 frente a las especies Gram(- y 4 contra la especie Gram(+. Las especies algales que mostraron actividad antibacteriana fueron: Acanthophora sp., Bryothamnion triquetrum, Gracilaria sp., Gelidium sp., Caulerpa mexicana, Caulerpa sp., Caulerpa spp., Halimeda incras- sata, Ulva sp., Codium decorticatum, Sargassum sp. Ninguno de los extractos de algas ensayados presentó actividad antimicótica sobre Cándida albicans. Los resultados obtenidos permiten concluir que las algas de la costa occidental de Venezuela, presentan compuestos bioactivos con actividad antibacteriana.

  16. Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria.

    Science.gov (United States)

    Wang, Jingyu; Pan, Xueru; Han, Yi; Guo, Daosen; Guo, Qunqun; Li, Ronggui

    2012-12-01

    Pine wilt disease (PWD), a destructive disease for pine trees, is caused by the pine wood nematode (PWN), Bursaphelenchus xylophilus and additional bacteria. In this study, extracts of Zostera marina showed a high nematicidal activity against PWN and some of the bacteria that it carries. Light yellow crystals were obtained from extracts of Z. marina through solvent extraction, followed by chromatography on AB-8 resin and crystallization. The NMR and HPLC analysis showed that the isolated compound was rosmarinic acid (RosA). RosA showed effective nematicidal activity, of which the LC₅₀ (50% lethal concentration) to PWN at 24 h, 48 h and 72 h was 1.18 mg/g, 1.05 mg/g and 0.95 mg/g, respectively. To get a high yield rate of RosA from Z. marina, single factor experiments and an L₉ (3⁴) orthogonal experiment were performed. This extraction process involved 70% ethanol for 3 h at 40 °C. The extraction dosage was 1:50 (w/v). The highest yield of RosA from Zostera was 3.13 mg/g DW (dried weight). The crude extracts of Zostera marina (10 mg/mL) and RosA (1 mg/mL) also showed inhibitory effects to some bacterial strains carried by PWN: Klebsiella sp., Stenotrophomonas maltophilia, Streptomyces sp. and Pantoea agglomerans. The results of these studies provide clues for preparing pesticide to control PWD from Z. marina. PMID:23201594

  17. Antifouling biocides in water and sediments from California marinas.

    Science.gov (United States)

    Sapozhnikova, Yelena; Wirth, Edward; Schiff, Kenneth; Fulton, Michael

    2013-04-15

    Irgarol 1051 is a common antifouling biocide and is highly toxic to non-target plant species at low ng/L concentrations. We measured up to 254 ng/L Irgarol in water and up to 9 ng/g dry weight Irgarol in sediments from Southern California recreational marinas. Irgarol's metabolite, M1, concentrations were up to 62 ng/L in water and 5 ng/g dry weight in sediments. Another antifouling biocide, diuron, reached up to 68 ng/L in water and 4 ng/g dry weight in sediments. The maximum Irgarol concentrations in water were greater than the Irgarol concentration recommended as the plant toxicity benchmark (136 ng/L), suggesting that Irgarol concentrations may be high enough to cause changes in phytoplankton communities in the sampled marinas. Irgarol concentrations measured in sediments were greater than calculated Environmental Risk Limits (ERLs) for Irgarol in sediments (1.4 ng/g). Antifouling pesticide accumulation in sediments may present a potential undetermined risk for benthic organisms. PMID:23453818

  18. Vegetative characteristics of Avicennia marina on the artificial inlet

    Directory of Open Access Journals (Sweden)

    AKBAR GHASEMI

    2012-10-01

    Full Text Available The purpose of this project is attempt to ecological development of Avicennia marina in hyper saline condition. During 2001 and 2002 a restoration mangrove project " planting A. marina in artificial inlet in Bushehr Province, Iran" was carried out in Agriculture &Natural resources research center of Bushehr province in Sabkha lands. Some the vegetative characteristics of such as height, diameter and crown diameter in two aspects were recorded in 2012. To investigate physico-chemical properties of soil were taken in inside and outside of inlet and were analyzed: salinity, soil acidity, potassium, phosphorus, nitrogen, texture of soil were measured. Both of treatments were analyzed by T test in SAS Software. The result showed that a different significant between inside and outside of Inlet in soil acidity, electrical conductivity, potassium content and sand and clay percent. But were not different significant in N and P. After ten years halophyte plants such as: Salicornia herbacea and Halocnemum strobilaceum and animals such as: mudskippers were observed into this area. Site conditions have an influence on the growth of seedling, which shows a different growth in the outside and inside of artificial inlets.

  19. Sulfide Intrusion and Detoxification in the Seagrass Zostera marina.

    Directory of Open Access Journals (Sweden)

    Harald Hasler-Sheetal

    Full Text Available Gaseous sulfide intrusion into seagrasses growing in sulfidic sediments causes little or no harm to the plant, indicating the presence of an unknown sulfide tolerance or detoxification mechanism. We assessed such mechanism in the seagrass Zostera marina in the laboratory and in the field with scanning electron microscopy coupled to energy dispersive X-ray spectroscopy, chromatographic and spectrophotometric methods, and stable isotope tracing coupled with a mass balance of sulfur compounds. We found that Z. marina detoxified gaseous sediment-derived sulfide through incorporation and that most of the detoxification occurred in underground tissues, where sulfide intrusion was greatest. Elemental sulfur was a major detoxification compound, precipitating on the inner wall of the aerenchyma of underground tissues. Sulfide was metabolized into thiols and entered the plant sulfur metabolism as well as being stored as sulfate throughout the plant. We conclude that avoidance of sulfide exposure by reoxidation of sulfide in the rhizosphere or aerenchyma and tolerance of sulfide intrusion by incorporation of sulfur in the plant are likely major survival strategies of seagrasses in sulfidic sediments.

  20. Influence of neighboring plants on shading stress resistance and recovery of eelgrass, Zostera marina L.

    Directory of Open Access Journals (Sweden)

    Camilla Gustafsson

    Full Text Available Stressful environments may enhance the occurrence of facilitative interspecific interactions between plants. In several regions, Zostera marina occurs in mixed assemblages. However, the potential effects of plant diversity on stress responses and stability properties of Z. marina are poorly understood. We investigated the resistance and recovery of Z. marina subjected to shading (1 mo in a field experiment lasting 2.5 mo. We shaded Z. marina planted in mono- and polycultures (Potamogeton perfoliatus, P. pectinatus, P. filiformis in a factorial design (Shading×Richness at 2 m depth. We estimated the resistance and recovery of Z. marina by measuring four response variables. Polyculture Z. marina lost proportionally less biomass than monocultures, thus having a greater resistance to shading. In contrast, after a 1 mo recovery period, monocultures exhibited higher biomass gain, and a faster recovery than polycultures. Our results suggest that plant species richness enhances the resistance of Z. marina through facilitative mechanisms, while the faster recovery in monocultures is possibly due to interspecific competition. Our results highlight the need of a much better understanding of the effects of interspecific interactions on ecosystem processes in mixed seagrass meadows, and the preservation of diverse plant assemblages to maintain ecosystem functioning.

  1. Comparison between cultivated and total bacterial communities associated with Cucurbita pepo using cultivation-dependent techniques and 454 pyrosequencing.

    Science.gov (United States)

    Eevers, N; Beckers, B; Op de Beeck, M; White, J C; Vangronsveld, J; Weyens, N

    2016-02-01

    Endophytic bacteria often have beneficial effects on their host plants that can be exploited for bioremediation applications but, according to the literature, only 0.001-1% of all endophytic microbes should be cultivable. This study compared the cultivated endophytic communities of the roots and shoots of Cucurbita pepo with the total endophytic communities as determined by cultivation-dependent techniques and 454 pyrosequencing. The ten most abundant taxa of the total communities aligned well with the cultivated taxa; however, the abundance of these taxa in the two communities differed greatly. Enterobacter showed very low presence in the total communities, whereas they were dominantly present in the cultivated communities. Although Rhizobium dominated in total root and shoot communities, it was poorly cultivable and even then only in growth media containing plant extract. Since endophytes likely contribute to plant-growth promotion, cultivated bacterial strains were tested for their plant-growth promoting capabilities, and the results were correlated with their abundance in the total community. Bacillus and Pseudomonas showed promising results when considering cultivability, abundance in the total community and plant-growth promoting capability. This study demonstrated that, although a limited number of bacterial genera were cultivable, current cultivation-dependent techniques may be sufficient for further isolation and inoculation experiments that aim to improve phytoremediation efficiency. PMID:26656884

  2. Seagrasses are negatively affected by organic matter loading and Arenicola marina activity in a laboratory experiment.

    Science.gov (United States)

    Govers, Laura L; Pieck, Timon; Bouma, Tjeerd J; Suykerbuyk, Wouter; Smolders, Alfons J P; van Katwijk, Marieke M

    2014-06-01

    When two ecosystem engineers share the same natural environment, the outcome of their interaction will be unclear if they have contrasting habitat-modifying effects (e.g., sediment stabilization vs. sediment destabilization). The outcome of the interaction may depend on local environmental conditions such as season or sediment type, which may affect the extent and type of habitat modification by the ecosystem engineers involved. We mechanistically studied the interaction between the sediment-stabilizing seagrass Zostera noltii and the bioturbating and sediment-destabilizing lugworm Arenicola marina, which sometimes co-occur for prolonged periods. We investigated (1) if the negative sediment destabilization effect of A. marina on Z. noltii might be counteracted by positive biogeochemical effects of bioirrigation (burrow flushing) by A. marina in sulfide-rich sediments, and (2) if previously observed nutrient release by A. marina bioirrigation could affect seagrasses. We tested the individual and combined effects of A. marina presence and high porewater sulfide concentrations (induced by organic matter addition) on seagrass biomass in a full factorial lab experiment. Contrary to our expectations, we did not find an effect of A. marina on porewater sulfide concentrations. A. marina activities affected the seagrass physically as well as by pumping nutrients, mainly ammonium and phosphate, from the porewater to the surface water, which promoted epiphyte growth on seagrass leaves in our experimental set-up. We conclude that A. marina bioirrigation did not alleviate sulfide stress to seagrasses. Instead, we found synergistic negative effects of the presence of A. marina and high sediment sulfide levels on seagrass biomass. PMID:24633960

  3. Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm.

    Science.gov (United States)

    Foesel, Bärbel U; Gieseke, Armin; Schwermer, Carsten; Stief, Peter; Koch, Liat; Cytryn, Eddie; de la Torré, José R; van Rijn, Jaap; Minz, Dror; Drake, Harold L; Schramm, Andreas

    2008-02-01

    Zero-discharge marine aquaculture systems are an environmentally friendly alternative to conventional aquaculture. In these systems, water is purified and recycled via microbial biofilters. Here, quantitative data on nitrifier community structure of a trickling filter biofilm associated with a recirculating marine aquaculture system are presented. Repeated rounds of the full-cycle rRNA approach were necessary to optimize DNA extraction and the probe set for FISH to obtain a reliable and comprehensive picture of the ammonia-oxidizing community. Analysis of the ammonia monooxygenase gene (amoA) confirmed the results. The most abundant ammonia-oxidizing bacteria (AOB) were members of the Nitrosomonas sp. Nm143-lineage (6.7% of the bacterial biovolume), followed by Nitrosomonas marina-like AOB (2.2% of the bacterial biovolume). Both were outnumbered by nitrite-oxidizing bacteria of the Nitrospira marina-lineage (15.7% of the bacterial biovolume). Although more than eight other nitrifying populations were detected, including Crenarchaeota closely related to the ammonia-oxidizer 'Nitrosopumilus maritimus', their collective abundance was below 1% of the total biofilm volume; their contribution to nitrification in the biofilter is therefore likely to be negligible. PMID:18093145

  4. Spirulina cultivation in China

    Science.gov (United States)

    Wu, Bo-Tang; Xiang, Wen-Zhou; Zeng, Cheng-Kui

    1998-03-01

    This paper reviews and discusses the development and many problems of Spirulina cultivation in China, points out the advantages and disadvantages of open photobioreactor system, and predicts that seawater Spirulina cultivation will be a new trend to be strengthened and emphasized due to its special physiological characteristics, easier management, lower fertilizer cost, and higher resistance to contaminants and rare pollution of chemicals.

  5. Functional State Modelling of Cultivation Processes: Dissolved Oxygen Limitation State

    Directory of Open Access Journals (Sweden)

    Olympia Roeva

    2015-04-01

    Full Text Available A new functional state, namely dissolved oxygen limitation state for both bacteria Escherichia coli and yeast Saccharomyces cerevisiae fed-batch cultivation processes is presented in this study. Functional state modelling approach is applied to cultivation processes in order to overcome the main disadvantages of using global process model, namely complex model structure and a big number of model parameters. Alongwith the newly introduced dissolved oxygen limitation state, second acetate production state and first acetate production state are recognized during the fed-batch cultivation of E. coli, while mixed oxidative state and first ethanol production state are recognized during the fed-batch cultivation of S. cerevisiae. For all mentioned above functional states both structural and parameter identification is here performed based on experimental data of E. coli and S. cerevisiae fed-batch cultivations.

  6. Effect of Temperature and Nutrient Manipulations on eelgrass Zostera marina L. from the Pacific Northwest, USA

    Science.gov (United States)

    Global climate change will have a large impact on the three predominate drivers of estuarine seagrass productivity, temperature, light and nutrients. I experimentally evaluate the response of Pacific Northwest Z. marina to interactive effects of temperature and nutrient conditio...

  7. JMarinas: a simple tool for the environmentally sound management of small marinas.

    Science.gov (United States)

    Mensa, J A; Vassallo, P; Fabiano, M

    2011-01-01

    A novel index for the preliminary evaluation of the distribution of pollutants in the harbor environment (Small Marinas Pollution Risk) is proposed. An associated Environmental Decision Support System (JMarinas) has been developed which implements the Multiple Attribute Decision Making theory (MADM) and uses the harbor's map as geographical support for computations. The MADM matrix is built considering various attributes of the marina and is calculated using both qualitative and quantitative data. Jmarinas has been applied to two small marinas along the Ligurian coast (Marina degli Aregai and Portosole) during the winter and summer seasons. Results show good spatial and temporal resolution and are in agreement with observations. For further quantitative assessment of performance, we refer to Irene et al. (2010). PMID:20833466

  8. Baltoscandali avavad vigurmarss ja Schubert / Marina Steinmo ; interv. Eva Kübar

    Index Scriptorium Estoniae

    Steinmo, Marina

    2008-01-01

    Baltoscandali teatrifestivalil esineva Eesti päritolu Rootsi tantsija ja koreograafi Charlotte Engelkesi klassikalisel muusikal põhinevatest lavastustest "Forellen and Me" ja "Miss Very Wagner" (dramaturg, teksti ja etenduse kontseptsiooni autor on Marina Steinmo)

  9. Eelgrass (Zostera marina) Microsatellite DNA Data; Pacific Coast of North America, 2000-2009

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha...

  10. Variación espacial y estacional de grupos funcionales de bacterias cultivables del suelo de un bosque tropical seco en México Spatial and seasonal variation of soil culturable-bacterial functional groups in a Mexican tropical dry forest

    Directory of Open Access Journals (Sweden)

    Noé Manuel Montaño

    2013-03-01

    Full Text Available Los bosques tropicales secos tienen una amplia heterogeneidad ambiental y por lo tanto se podría esperar una variación temporal y espacial en la abundancia y tipo de grupos bacterianos activos. Se evaluó, durante dos años consecutivos, el efecto de la estacionalidad de la lluvia sobre algunos grupos bacterianos cultivables y nutrimentos del suelo en dos posiciones topográficas (crestas vs laderas en el bosque tropical seco, Chamela Jalisco, México. La hipótesis fue que la variación temporal y espacial de la disponibilidad de recursos afectaría la abundancia de los grupos bacterianos funcionales (heterótrofas totales, celulolíticas, solubilizadores de fosfatos y nitrificantes del suelo. En las crestas, el suelo fue más orgánico y con mayor concentración de nutrimentos totales y C orgánico lábil que en la ladera, registrando más bacterias heterótrofas y solubilizadoras de fosfato. En ambas posiciones topográficas la concentración de C y nutrimentos, así como el número de bacterias heterótrofas y solubilizadoras de P, decrecieron de la estación seca a la lluviosa en ambos años. En contraste, las bacterias nitrificantes fueron mayores en el suelo de la ladera, y al igual que las celulolíticas, tuvieron un patrón estacional opuesto a las bacterias heterótrofas, asociado a la disminución del C lábil y de la calidad de la materia orgánica. En conclusión, se sugiere que el relieve, la estacionalidad y la variación inter-anual de la lluvia regulan interactivamente la relación entre el C disponible y la estructura de las comunidades bacterianas del suelo en el bosque tropical seco de Chamela.Microbial biomass and activity in soils are frequently studied in tropical dry forests, but scarce information is available about the relationships between functional bacterial groups and soil fertility, where relief interacts with rainfall seasonality. The culturable-bacterial groups and nutrients were studied during two consecutive

  11. 乳酸菌高密度培养及其在产品中保持高密度的研究%Research on high cell density cultivation and survival of lactic acid bacteria in products

    Institute of Scientific and Technical Information of China (English)

    李秋琴; 王世杰; 陆淳; 于景华

    2011-01-01

    High cell density cultivations (HCDC) oflactobacillus are very important as LAB not simply as starter but also as probiotics ingredient to add to beverage or other dairy product, and keeping the LAB survival by certain measures is also more important.This article focuses on the current knowledge of HCDC of LAB and some measures to keep the probiotics activity in the products.%制备高密度菌数含量的活性乳酸菌饮料和高活性乳酸菌制剂的一个重要前提是实现乳酸菌高密度培养,另则是采取一定的方法保持产品保质期内乳酸菌的活性与数量.综述了国内外不同乳酸菌高密度培养的技术和现状,以及如何防止产品益生菌活力下降的措施.

  12. Marina Caffiero (Hg.: Rubare le anime. Roma: Viella 2008

    Directory of Open Access Journals (Sweden)

    Rita Unfer Lukoschik

    2009-07-01

    Full Text Available In den Akten des päpstlichen Staatsarchivs und der römischen jüdischen Gemeinde finden sich zeitgenössische Zeugnisse für die im päpstlichen Rom vom 16. bis zum 19. Jahrhundert nicht seltene Zwangskonvertierung jüdischer Mädchen und Frauen zum Katholizismus. Eines der wertvollsten Dokumente dieser Konversionspraxis liegt nunmehr in einer kommentierten Neuedition vor: das Tagebuch der 1749 sich erfolgreich der versuchten Zwangskonvertierung widersetzenden 18-jährigen Anna del Monte. In ihrer Einleitung ordnet die Herausgeberin Marina Caffiero dieses außergewöhliche Einzelschicksal in die zeitgleich und parallel laufenden Assimilations- und Emanzipationsprozesse ein, die sich in der mit aufklärerischem Gedankengut ‚infizierten‘ jüdischen Oberschicht Roms im 18. Jahrhundert abzeichneten.Contemporary reports on the forced conversion of Jewish girls and woman to Catholicism, not a rare occurrence in papal Rome from the 16th to the 19th centuries, can be found in the files of the official papal archive and the Roman Jewish community. One of the most valuable documents of this conversion practice has now been published in a new annotation edition: The diary of 18-year-old Anna del Monte, who was able to successfully resist the attempted forced conversion in 1749. In her introduction the editor Marina Caffiero places this extraordinary individual fate within the concurrent and parallel processes of assimilation and emancipation. These emerge in 18th century Rome’s Jewish upper class, which was “infected” with Enlightenment ideas.

  13. Low Diversity Bacterial Community and the Trapping Activity of Metabolites from Cultivable Bacteria Species in the Female Reproductive System of the Oriental Fruit Fly, Bactrocera dorsalis Hendel (Diptera: Tephritidae

    Directory of Open Access Journals (Sweden)

    Hongyu Zhang

    2012-05-01

    Full Text Available Our goal was to identify the bacteria inhabiting the reproductive system of the female oriental fruit fly, Bactrocera dorsalis (Hendel, and evaluate the chemotaxis of B. dorsalis to the metabolites produced by the bacteria. Based on 16S rRNA-based polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE, 18 operational taxonomic units (OTUs were assigned to the five bacterial classes Betaproteobacteria, Alphaproteobacteria, Gammaproteobacteria, Bacilli and Actinobacteria. Nine OTUs were assigned to Gammaproteobacteria, which was the most highly represented class. Enterobacteriaceae constituted the dominant family, and within this family, three genera and five species were identified, including Enterobacter sakazakii, Klebsiella oxytoca, Klebsiella pneumoniae, Raoultella terrigena and Enterobacter amnigenus. In this set, the first two species were the dominant components, and the latter three species were the minor ones. Finally, we found that the metabolites produced by R. terrigena, K. oxytoca and K. pneumoniae were attractive to the B. dorsalis adults, and in field studies, B. dorsalis adults were most attracted to K. oxytoca. Collectively, our results suggest that the female reproductive system plays an important role in the transfer of enterobacteria from the gut to fruit. Our data may prompt the development of a female-targeted population control strategy for this fly.

  14. Effects of used lubricating oil on two mangroves Aegiceras corniculatum and Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    An outdoor experiment was set up to investigate the effects of used lubricating oil (5 L/m2) on Aegiceras corniculatum Blanco. and Avicennia marina (Forsk) Vierh., two salt-excreting mangroves. A. marina was more sensitive to used lubricating oil than A. corniculatum and canopy-oiling resulted in more direct physical damage and stronger lethal effects than base-oiling. When treated with canopy-oiling, half of A. corniculatum plants survived for the whole treatment time (90 d); but, for A. marina, high mortality (83%) resulted from canopy-oiling within 3 weeks and no plants survived for 80 d. Base-oiling had no lethal effects on A. corniculatum plants even at the termination of this experiment, but 83% of A. marina plants died 80 d after treatment. Forty days after canopy-oiling, 93% of A. corniculatum leaves fell and no live leaves remained on A. marina plants. By the end of the experiment, base-oiling treatment resulted in about 45% of A. corniculatum leaves falling, while all A. marina leaves and buds were burned to die. Lubricating oil resulted in physiological damage to A. corniculatum leaves, including decreases in chlorophyll and carotenoid contents, nitrate reductase, peroxidase and superoxide dismutase activities, and increases in malonaldehyde contents. For both species, oil pollution significantly reduced leaf, root, and total biomass, but did not significantly affect stem biomass. Oil pollution resulted in damage to the xylem vessels of fine roots but not to those of mediate roots.

  15. Metabolism of pyrene by the polychaetes Nereis diversicolor and Arenicola marina.

    Science.gov (United States)

    Christensen, Mette; Andersen, Ole; Banta, Gary T

    2002-07-01

    Absorption and elimination of [(14)C-4,5,9,10]pyrene and production of water-insoluble and water-soluble pyrene metabolites by the polychaetes Nereis diversicolor and Arenicola marina were studied. Both polychaete species were capable of rapidly accumulating and eliminating pyrene. Steady state concentrations of pyrene were established in both polychaete species within 5 days of exposure to contaminated sediments, with A. marina having 5-10 times higher bioaccumulation factors than N. diversicolor. Both water-soluble and water-insoluble metabolites were detected in tissues of N. diversicolor and A. marina. After transferring worms to uncontaminated sediment, about 50% of the body burden of parent pyrene was excreted within 1.5 days, with elimination in A. marina being faster than in N. diversicolor. The only identified water-insoluble metabolite produced by N. diversicolor was 1-hydroxypyrene. Pyrene metabolites were present in A. marina, but could not be identified. Long- and short-term absorption experiments showed an increasing production of water-soluble metabolites over time in the lugworm, which strongly suggests the presence of a PAH metabolising system in A. marina. PMID:12062152

  16. 从腐败食品中分离的乳酸菌生物被膜形成的影响因素%Effect of Different Cultivation Conditions on Biofilm Formation of Lactic Acid Bacteria Isolated from Spoiled Food

    Institute of Scientific and Technical Information of China (English)

    谢丽斯; 张宏梅; 刘学禄; 张文艳; 黄宝威; 许佳晶; 郑添信; 刘彦兰

    2011-01-01

    从腐败的蔬菜和肉质食品中分离筛选乳酸菌(LAB),并以其作为研究对象,对乳酸菌生物成膜不同影响因素进行研究.生化分离鉴定乳酸菌,在不同的营养物质浓度及培养条件下,用96孔板法检测乳酸菌成膜.在无外添加物,37℃和42℃的培养温度,pH 4有利于乳酸菌生物膜的形成,低温不利于生物膜的形成.低浓度的NaCl可促进LAB形成生物膜,但高于某浓度,就抑制LAB成膜.不同LAB菌株对不同葡萄糖浓度成膜效果不同,且与温度交互作用.结果表明,腐败食品中乳酸菌具有一定的生物被膜形成能力,控制乳酸菌生物膜的形成对于防治食品的腐败变质具有一定的意义.%To isolate and identify lactic acid bacteria (LAB) from spoiled food and investigate the effect of different factors on biofilm formation. The strains were identified by the biochemistry methods. Biofilm formation was tested by microtiter-plate method under the different nutrient conditions, temperature and pH. The strains' biofilm was detected by microtiter - plate method. 37℃, 42℃ and pH4 suboptimal for growth increased the production of biofilm. Low concentration of sodium chloride enhanced the biofilm formation (BF), but above a certain level, BFs were restrained. Different concentrations of glucose have different effect on strains biofilm formation at different temperatures. BFs were spread widely among lactic acid bacteria from spoiled food. Preventing the formation of BFs has its significance in food preservation.

  17. Methanotrophic bacteria.

    OpenAIRE

    Hanson, R S; Hanson, T. E.

    1996-01-01

    Methane-utilizing bacteria (methanotrophs) are a diverse group of gram-negative bacteria that are related to other members of the Proteobacteria. These bacteria are classified into three groups based on the pathways used for assimilation of formaldehyde, the major source of cell carbon, and other physiological and morphological features. The type I and type X methanotrophs are found within the gamma subdivision of the Proteobacteria and employ the ribulose monophosphate pathway for formaldehy...

  18. Nitric oxide removal by wastewater bacteria in a biotrickling filter

    OpenAIRE

    Niu, Hejingying; 牛何晶英.

    2013-01-01

    Nitric oxide (NO) is one of the most important air pollutants in atmosphere mainly emitted from combustion exhaust gas. In this research, a biotrickling filter was designed and operated to remove this pollutant from an air stream using bacteria extracted from the sewage sludge of a municipal sewage-treatment plant. The bacteria were cultured and enriched by either petri dish’s cultivation or liquid cultivation. The adsorption capacity of the ceramic material, which was used as the packing ma...

  19. Probing control of fed-batch cultivations: analysis and tuning

    DEFF Research Database (Denmark)

    Åkesson, Mats Fredrik; Hagander, P.; Axelsson, J.P.

    2001-01-01

    Production of various proteins can today be made using genetically modified Escherichia coli bacteria. In cultivations of E. coli it is important to avoid accumulation of the by- product acetate. Formation of acetate occurs when the specific glucose uptake exceeds a critical value and can be avoi...

  20. Eelgrass (Zostera marina) Food Web Structure in Different Environmental Settings.

    Science.gov (United States)

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne; Boström, Christoffer; Clausen, Kevin Kuhlmann; Krause-Jensen, Dorte; Olesen, Birgit; Rasmussen, Jonas Ribergaard; Svensson, Carl Johan; Holmer, Marianne

    2016-01-01

    This study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure. PMID:26752412

  1. Eelgrass (Zostera marina Food Web Structure in Different Environmental Settings.

    Directory of Open Access Journals (Sweden)

    Jonas Thormar

    Full Text Available This study compares the structure of eelgrass (Zostera marina L. meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure.

  2. Antifouling paint booster biocides (Irgarol 1051 and diuron) in marinas and ports of Bushehr, Persian Gulf.

    Science.gov (United States)

    Saleh, Abolfazl; Molaei, Saeideh; Sheijooni Fumani, Neda; Abedi, Ehsan

    2016-04-15

    In the present study, antifouling paint booster biocides, Irgarol 1051 and diuron were measured in ports and marinas of Bushehr, Iran. Results showed that in seawater samples taken from ports and marinas, Irgarol was found at the range of less than LOD to 63.4ngL(-1) and diuron was found to be at the range of less than LOD to 29.1ngL(-1) (in Jalali marina). 3,4-dichloroaniline (3,4-DCA), as a degradation product of diuron, was also analyzed and its maximum concentration was 390ngL(-1). Results for analysis of Irgarol 1051 in sediments showed a maximum concentration of 35.4ngg(-1) dry weight in Bandargah marina. A comparison between the results of this study and those of other published works showed that Irgarol and diuron pollutions in ports and marinas of Bushehr located in the Persian Gulf were less than the average of reports from other parts of the world. PMID:26917092

  3. The radiological exposure of the population of the European Community from radioactivity in North European marine waters Project 'Marina'

    International Nuclear Information System (INIS)

    Project Marina was set up by the Commission of the European Communities in 1985 to look at the radiological impact of radionuclides, both natural and anthropogenic, in northern European marine waters. This paper is a summary of project Marina's work and its conclusions

  4. Big bacteria

    DEFF Research Database (Denmark)

    Schulz, HN; Jørgensen, BB

    2001-01-01

    A small number of prokaryotic species have a unique physiology or ecology related to their development of unusually large size. The biomass of bacteria varies over more than 10 orders of magnitude, from the 0.2 mum wide nanobacteria to the largest cells of the colorless sulfur bacteria......, Thiomargarita namibiensis, with a diameter of 750 mum. All bacteria, including those that swim around in the environment, obtain their food molecules by molecular diffusion. Only the fastest and largest swimmers known, Thiovulum majus, are able to significantly increase their food supply by motility and by...... actively creating an advective flow through the entire population. Diffusion limitation generally restricts the maximal size of prokaryotic cells and provides a selective advantage for mum-sized cells at the normally low substrate concentrations in the environment. The largest heterotrophic bacteria, the...

  5. Anaerobic bacteria

    Science.gov (United States)

    Brook I, Goldstein EJ. Diseases caused by non-spore forming anaerobic bacteria. In: Goldman L, Schafer AI, eds. Goldman's Cecil Medicine . 25th ed. Philadelphia, PA: Elsevier Saunders; 2015:chap 297. Stedman's Online ...

  6. Do small marinas drive habitat specific impacts? A case study from Mediterranean Sea.

    Science.gov (United States)

    Di Franco, Antonio; Graziano, Mariagrazia; Franzitta, Giulio; Felline, Serena; Chemello, Renato; Milazzo, Marco

    2011-05-01

    Many human activities add new structures to the marine landscape. Despite the fact that human structures cause some inevitable impacts, surprisingly little information exists on the effects of marina on natural marine assemblages. The aim of this paper is to assess habitat-specific response of benthic sessile organisms of rocky shores in relation to the presence of a small marina. Sampling was carried out at three coastal habitats (midshore, lowshore and subtidal) by means of visual censuses adopting an after-control-impact (ACI) experimental design. It appears that the marina affects the structure and composition of benthic communities of both the midshore and the lowshore. Little effect was evident on shallow subtidal assemblage structure. The results of the present study clearly show habitat-specific responses of coastal benthic assemblages to the presence of infrastructure. PMID:21421247

  7. Effects of the polychaetes Arenicola marina and Nereis diversicolor on microbial pyrene mineralization

    DEFF Research Database (Denmark)

    Timmermann, Karen; Banta, Gary T.; Johnsen, Anders R.;

    2008-01-01

    mineralization potential in bulk (reduced and presumably anoxic) sediment was significantly lower than for surface and burrow sediments. However, when the bulk sediments were oxidized, mineralization rates increased rapidly. Collectively, these data indicate that oxygen availability controlled pyrene......The effects of 2 polychaetes, Nereis diversicolor and Arenicola marina, on the microbial mineralization of the organic contaminant pyrene, a polycyclic aromatic hydrocarbon (PAH), were followed over 44 d. We also examined whether the effect of the polychaetes was caused by enhanced oxygen supply......, altered pyrene bioavailability and/or a changed abundance or activity of pyrenedegrading bacteria. The presence of polychaetes enhanced microbial pyrene mineralization by 180 to 200% compared with defaunated sediment. Collectively, the replicates of the different treatments showed that mineralization...

  8. Screening of Salt-stress, Antioxidant Enzyme, and Antimicrobial Activity of Leave extracts of Mangroves Avicennia marina L. from Hodaidah, Yemen

    Directory of Open Access Journals (Sweden)

    Maher A. Al Maqtari

    2014-05-01

    Full Text Available In the present study the salinity stress, antioxidant enzyme and antimicrobial activities of leaf extract of Avicennia marinawere investigated. As visualized from SDS-PAGE, no differences was found in number of protein band, but the intensities of several protein bands having apparent molecular mass by reduced severely in salt treated samples with enhanced activities of CAT, POX and GPX. Escherichia coli (ATCC8739, Staphylococus aureus (ATCC 6538, and Bacillus subtilis (ATCC6633 and fungus (Candida albicans ATCC 2091, and Aspergillus niger ATCC 16404 were used as the test pathogenic bacteria and fungi, respectively in this study. The Avicennia marina extract possessed antibacterial activity against E. coli, S. aureus, and B. subtilis (12, 6, and 7 mm respectively, with antifungal activity against C. albicans and A. niger (9 and 10 mm.

  9. El Instituto Hidrográfico de la Marina

    Directory of Open Access Journals (Sweden)

    Pérez Carrillo de Albornoz, Francisco J.

    2002-10-01

    Full Text Available Not available

    Se expone en este artículo la amplia labor que desarrolla el Instituto Hidrográfico de la Marina (IHM y su participación en múltiples programas y proyectos nacionales e internacionales, representando a España y manteniendo relaciones permanentes de colaboración con diversas Organizaciones, Comisiones y Comités de carácter supranacional. Tras una síntesis histórica del IHM, cuyos orígenes en el Padrón Real de 1508 le otorgan la rimacía mundial como Instituto Hidrográfico, se describen detalladamente las actividades que desarrolla el Instituto en las diferentes áreas de su competencia (Hidrografia, Geodesia y Fotogrametría, Cartografía, Navegación, Oceanografía, destacando el intenso y continuado trabajo que realizan sus buques hidrográficos y el proceso de transformación que se está llevando a cabo para implantar las modernas tecnologías en todos estos campos de actuación. Haciendo honor a la cita de que «Europa aprendió a navegar en libros españoles», se recogen también en este artículo las numerosas publicaciones que continúa editando el Instituto, como responsable que es de mantener actualizada la cartografía náutica y sus correspondientes avisos y ayudas a la navegación, para finalizar con una referencia a la labor docente que desarrolla su Escuela de Hidrografía.

  10. New species of Parapharyngodon (Nematoda: Pharyngodonidae) in Rhinella marina (Anura: Bufonidae) from Grenada, West Indies

    Science.gov (United States)

    Bursey, Charles; Drake, Michael; Cole, Rebecca; Sterner, Mauritz, III; Pinckney, Rhonda; Zieger, Ulrike

    2013-01-01

    Parapharyngodon grenadaensis n. sp. (Nematoda: Pharyngodonidae) from the large intestine of the cane toad, Rhinella marina, is described and illustrated. Parapharyngodon grenadaensis n. sp. is the 48th species assigned to the genus and the 16th species from the Neotropical region. It differs from other species in the genus by possessing 4 pairs of caudal papillae, an echinate anterior cloacal lip, and a blunt spicule of 67–104 μm. This is only the second report of R. marina harboring a species of Parapharyngodon.

  11. Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Fragner, Lena; Holmer, Marianne;

    2015-01-01

    We investigated the response, adaptation and tolerance mechanisms of the temperate seagrass Zostera marina to water column anoxia. We exposed Z. marina to a diurnal light/dark cycle under anoxia and assessed the metabolic response by measuring the metabolome with gas chromatography coupled to mass...... in lactate and pyruvate and an increase in alanine, GABA and succinate. This reprogramming of the metabolome after 21 h under anoxia indicates a possible mitigation mechanism to avoid the toxic effects of anoxia. A pathway enrichment analysis proposes the alanine shunt, the GABA shunt and the 2...

  12. Nuovi dati e argomenti per Ostia tardoantica dal Progetto Ostia Marina

    OpenAIRE

    David, Massimiliano; Carinci, Mauro; Graziano, Stella Maria; Togni, Stefano; Pellegrino, Angelo; Turci, Marcello

    2014-01-01

    Nuove ricerche condotte dal Dipartimento di Storia, Culture e Civiltà dell’Università di Bologna nell’ambito del « Progetto Ostia Marina » sono attualmente in corso nel quartiere fuori porta Marina dell'antica città costiera di Roma, un settore extraurbano che sta rivelando un notevole potenziale informativo. È stato per ora possibile documentare diversi momenti della vita della città (I-VI sec. d.C.), così come i tempi di abbandono e di decomposizione del tessuto urbano (VII-XVIII sec.). Il ...

  13. Evaluación del Potencial Bioactivo de las Esponjas Marinas Myrmekioderma gyroderma y Topsentia ophiraphidites

    OpenAIRE

    Blandón García, Lina Marcela

    2012-01-01

    A partir de las esponjas marinas se han obtenido gran cantidad de sustancias con potencial antitumoral. En este estudio se realizó la evaluación de la actividad citotóxica, de fracciones de las esponjas marinas Topsentia ophiraphidites y Myrmekioderma gyroderma en dos líneas celulares (Jurkat y CHO). Sólo la fracción T4 de Topsentia ophiraphidites presentó actividad citotóxica, por lo que se le realizaron ensayos posteriores de genotoxicidad y efectos sobre el ciclo celular, resultando crónic...

  14. Chasing the Intangible: a Conversation on Theatre, Language, and Artistic Migrations with Irish Playwright Marina Carr

    Directory of Open Access Journals (Sweden)

    Valentina Rapetti

    2014-07-01

    Full Text Available Offally born Marina Carr is amongst the most prolific, influential and internationally renowned Irish playwrights of our times. Since her debut on the avant-garde side of the Dublin theatre scene in the late Eighties, she has had  seventeen plays professionally produced, both in and outside Ireland. Her earlier work is influenced by Samuel Beckett’s Absurdist drama, while in her most mature and recent plays she draws on both classical and Irish mythology, Greek tragedies and Shakespeare’s poetics. In this interview, Marina Carr recalls and discusses some pivotal moments of her upbringing and career; she also speaks about language, landscape, dream

  15. ASOCIACIONES ENTRE AVES MARINAS Y SOTALIA GUIANENSIS EN EL SUR DEL GOLFO DE VENEZUELA

    OpenAIRE

    NÍNIVE ESPINOZA-RODRÍGUEZ; JOANMYRA CARRASQUERO; KAREEN DE TURRIS-MORALES; GABRIELA DELGADO-ORTEGA; HÉCTOR BARRIOS-GARRIDO

    2015-01-01

    Las asociaciones entre aves marinas y mamíferos marinos es un evento común en todos los mares y océanos del mundo. Muchos autores han denominado estas asociaciones como relaciones comensalistas, oportunistas o parasitarias, según el efecto que dicha interacción resulte sobre una o ambas especies relacionadas. Con la finalidad de describir la existencia de agrupaciones entre Sotalia guianensis y aves marinas en la porción sur del Golfo de Venezuela, desde junio 2011 a junio 2012 se realizaron ...

  16. Marina Kaljurand: hoolimata kõigest oli möödunud aasta ikkagi hea aasta / Marina Kaljurand ; interv. Igor Taro

    Index Scriptorium Estoniae

    Kaljurand, Marina, 1962-

    2008-01-01

    Ilmunud ka: Postimees : na russkom jazõke 3. jaan., lk. 5. Postimehe poolt aasta inimeseks valitud Eesti suursaadik Venemaal vastab küsimustele, mis puudutavad hinnangut 2007. aastale, pronkssõduriga seotud sündmuste üleelamist Moskvas, Venemaa poliitikute suhtumist Eestisse, Eesti-Vene suhteid. Kommenteerivad: Urmas Paet, Tiit Matsulevitš, Toomas Hendrik Ilves. Lisa: Marina Kaljurand; Pronkssõduri-sõda

  17. Continuous Cultivation of Photosynthetic Bacteria for Fatty Acids Production

    DEFF Research Database (Denmark)

    Kim, Dong-Hoon; Lee, Ji-Hye; Hwang, Yuhoon; Kang, Seoktae; Kim, Mi-Sun

    2013-01-01

    d, cell concentration continuously increased from 0.97 g dcw/L to 2.05 g dcw/L as lactate concentration increased from 30 mM to 60 mM. At 70 mM, however, cell concentration fluctuated with incomplete substrate degradation. By installing a membrane unit to CFSTR, a stable performance was observed...

  18. Macroalgae as feedstock for cultivation of marine bacteria

    OpenAIRE

    França, Lucas Vagueiro de

    2015-01-01

    Alginate, laminarin and mannitol amount up to 60% of dry weight in brown macroalgae. The presence of alginate and laminarin-degrading enzymes and mannitol metabolic machinery have been confirmed by Matís, a partner in European BlueGenics project. Thus, in a biorefinery perspective, R. marinus can potentially perform the saccharification and fermentation of brown macroalgae carbohydrates to yield commercial valuable biocompounds, as thermostable enzymes and glycosidic carotenoids. Rhodothermus...

  19. Evanescent cultivation of photosynthetic bacteria on thin waveguides

    International Nuclear Information System (INIS)

    Waveguides with thicknesses similar to biofilms (10–100 µm) provide an opportunity to improve the bioenergy density of biofilm photobioreactors, avoiding the fundamental light- and mass-transport productivity limitations of planktonic photobioreactors. This report investigates the biofilm growth of a mutant of Synechococcus elongatus (PCC 7942) in evanescent light fields that can be scaled over large planar areas. In this study, areas of 7.2 cm2 are illuminated via frustrated total internal reflections on planar waveguides. The resulting photosynthetic biofilm growth showed resilience to surface intensities exceeding photosynthetic limits and a more uniform cell density distribution (1.0 ± 0.3 × 109 mL−1) than predicted from surface light distribution profiles. These results indicate potential for larger area biofilms using the uniform lighting conditions identified. The combination of evanescent illumination with biofilms indicates a modular reactor cell density on the order of 108 mL−1, representing a two orders of magnitude improvement over current facility architectures, with significant potential for further improvement through denser biofilms. (paper)

  20. Physiological responses of Zostera marina and Cymodocea nodosa to light-limitation stress.

    Directory of Open Access Journals (Sweden)

    João Silva

    Full Text Available The effects of light-limitation stress were investigated in natural stands of the seagrasses Zostera marina and Cymodocea nodosa in Ria Formosa coastal lagoon, southern Portugal. Three levels of light attenuation were imposed for 3 weeks in two adjacent meadows (2-3 m depth, each dominated by one species. The response of photosynthesis to light was determined with oxygen electrodes. Chlorophylls and carotenoids were determined by high-pressure liquid chromatography (HPLC. Soluble protein, carbohydrates, malondialdehyde and phenol contents were also analysed. Both species showed evident signs of photoacclimation. Their maximum photosynthetic rates were significantly reduced with shading. Ratios between specific light harvesting carotenoids and the epoxidation state of xanthophyll cycle carotenoids revealed significantly higher light harvesting efficiency of C. nodosa, a competitive advantage in a low light environment. The contents of both soluble sugars and starch were considerably lower in Z. marina plants, particularly in the rhizomes, decreasing even further with shading. The different carbohydrate energy storage strategies found between the two species clearly favour C. nodosa's resilience to light deprivation, a condition enhanced by its intrinsic arrangement of the pigment pool. On the other hand, Z. marina revealed a lower tolerance to light reduction, mostly due to a less plastic arrangement of the pigment pool and lower carbohydrate storage. Our findings indicate that Z. marina is close to a light-mediated ecophysiological threshold in Ria Formosa.

  1. Possibilities for restoration of Zostera marina beds in the Dutch Wadden Sea

    NARCIS (Netherlands)

    Katwijk, Margaretha Maria van

    2000-01-01

    The Wadden Sea lost its economically valuable seagrass (Zostera marina) beds during the 1930s. The beds never recovered and only sparse beds remain around mean sea level. As the conditions in the Dutch Wadden Sea have improved since the late 1980s (improved water quality, local prohibition of fisher

  2. Biochemical characterization of the eelgrass Zostera marina at its southern distribution limit in the North Pacific

    Science.gov (United States)

    Cabello-Pasini, Alejandro; Munoz-Salazar, R.; Ward, D.H.

    2004-01-01

    The eelgrass Zostera marina L. is distributed along the Baja California Peninsula (Mexico) where it is exposed to a wide range of irradiances and temperatures that could promote changes in its biochemical composition. Consequently, the objective of this study was to characterize the variations in the levels of chlorophyll, carbohydrates, proteins, fiber, ash and calories in the shoots of Z. marina from the north (San Quintin) and south (Ojo de Liebre and San Ignacio lagoons) of the peninsula. Temperature in the southern lagoons was 5-6??C higher than in the northern lagoon; likewise, in situ irradiance was two-fold greater in the south than in the north. As a result of the lower irradiance levels, the concentration of chlorophyll in the shoots of Z. marina was twice as high (1.7 mg gWW-1) in the northern lagoon than in the southern ones (0.8 mg gWW-1). Similar to chlorophyll levels, the concentration of soluble carbohydrates in the shoots was greater in the northern lagoon than in the southern ones, suggesting that the high levels of chlorophyll are enough to compensate for the low irradiance levels and to maintain a positive carbon balance at San Quintin. On the other hand, the levels of proteins in the shoots from the north of the peninsula were slightly lower than those from the southern populations. In general, these results suggest that the different environmental conditions to which Z. marina is exposed along the peninsula impact its biochemical composition.

  3. Diurnal effects of anoxia on the metabolome of the seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Holmer, Marianne; Weckwerth, Wolfram;

    2014-01-01

    Environmental metabolomics has become interesting in marine ecological studies. One example is the revealing of new insights in stress response of Zostera marina. This is essential to understand how, at which level and to what extend aquatic plants adapt, tolerate and react to environmental stres...

  4. Biodynamic modelling and the prediction of accumulated trace metal concentrations in the polychaete Arenicola marina

    International Nuclear Information System (INIS)

    The use of biodynamic models to understand metal uptake directly from sediments by deposit-feeding organisms still represents a special challenge. In this study, accumulated concentrations of Cd, Zn and Ag predicted by biodynamic modelling in the lugworm Arenicola marina have been compared to measured concentrations in field populations in several UK estuaries. The biodynamic model predicted accumulated field Cd concentrations remarkably accurately, and predicted bioaccumulated Ag concentrations were in the range of those measured in lugworms collected from the field. For Zn the model showed less but still good comparability, accurately predicting Zn bioaccumulation in A. marina at high sediment concentrations but underestimating accumulated Zn in the worms from sites with low and intermediate levels of Zn sediment contamination. Therefore, it appears that the physiological parameters experimentally derived for A. marina are applicable to the conditions encountered in these environments and that the assumptions made in the model are plausible. - Biodynamic modelling predicts accumulated field concentrations of Ag, Cd and Zn in the deposit-feeding polychaete Arenicola marina.

  5. Atlantic Cod (Gadus morhua benefits from the availability of seagrass (Zostera marina nursery habitat

    Directory of Open Access Journals (Sweden)

    Richard J. Lilley

    2014-12-01

    Full Text Available The Atlantic cod (Gadus morhua is a species of significant economic and historic importance but infamous for its decline. Apart from overfishing, the causes of this decline and its subsequent lack of recovery remain largely unresolved. Indeed, the degree to which specific habitats are important for this species remains unquantified at the scale of North Atlantic. Here, the literature on the role of eelgrass meadows (Zostera marina as valuable nursery habitat for the Atlantic cod is reviewed and synthesized. Evidence is presented on relative densities of Atlantic cod in shallow water environments and in eelgrass meadows in comparison to alternative habitats. In addition, evidence pertaining to the ’viability gains’ attributed to the use of eelgrass meadows as nursery habitat (growth and survival by juvenile Atlantic cod is analyzed. Although juvenile Atlantic cod use of Z. marina is found to be facultative, when possible, available literatures indicates that they may select Z. marina as a nursery habitat where they are found in high density (average of at least 246 ha−1. From their use of Z. marina habitat the juvenile Atlantic cod receives viability benefits from it, improving their chances of reaching maturation. This paper provides strong evidence that eelgrass meadows are of significant importance to contributing to Atlantic cod stocks.

  6. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Science.gov (United States)

    2010-04-01

    ...; (c) Available fresh water facilities for tank flushing; (d) Check valve and positive cut-off or other... 18 Conservation of Power and Water Resources 2 2010-04-01 2010-04-01 false Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources...

  7. Rosmarinic Acid from Eelgrass Shows Nematicidal and Antibacterial Activities against Pine Wood Nematode and Its Carrying Bacteria

    Directory of Open Access Journals (Sweden)

    Qunqun Guo

    2012-11-01

    Full Text Available Pine wilt disease (PWD, a destructive disease for pine trees, is caused by the pine wood nematode (PWN, Bursaphelenchus xylophilus and additional bacteria. In this study, extracts of Zostera marina showed a high nematicidal activity against PWN and some of the bacteria that it carries. Light yellow crystals were obtained from extracts of Z. marina through solvent extraction, followed by chromatography on AB-8 resin and crystallization. The NMR and HPLC analysis showed that the isolated compound was rosmarinic acid (RosA. RosA showed effective nematicidal activity, of which the LC50 (50% lethal concentration to PWN at 24 h, 48 h and 72 h was 1.18 mg/g, 1.05 mg/g and 0.95 mg/g, respectively. To get a high yield rate of RosA from Z. marina, single factor experiments and an L9 (34 orthogonal experiment were performed. This extraction process involved 70% ethanol for 3 h at 40 °C. The extraction dosage was 1:50 (w/v. The highest yield of RosA from Zostera was 3.13 mg/g DW (dried weight. The crude extracts of Zostera marina (10 mg/mL and RosA (1 mg/mL also showed inhibitory effects to some bacterial strains carried by PWN: Klebsiella sp., Stenotrophomonas maltophilia, Streptomyces sp. and Pantoea agglomerans. The results of these studies provide clues for preparing pesticide to control PWD from Z. marina.

  8. Soil and Rhizosphere Associated Fungi in Grey Mangroves (Avicennia marina) from the Red Sea - A Metagenomic Approach

    KAUST Repository

    Simões, Marta Filipa

    2015-11-05

    Covering a quarter of the world’s tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea grey mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from grey mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%), while Basidiomycota was less abundant (14%–24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the grey mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  9. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina from the Red Sea — A Metagenomic Approach

    Directory of Open Access Journals (Sweden)

    Marta Filipa Simões

    2015-10-01

    Full Text Available Covering a quarter of the world’s tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%, while Basidiomycota was less abundant (14%–24%, yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  10. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach.

    Science.gov (United States)

    Simões, Marta Filipa; Antunes, André; Ottoni, Cristiane A; Amini, Mohammad Shoaib; Alam, Intikhab; Alzubaidy, Hanin; Mokhtar, Noor-Azlin; Archer, John A C; Bajic, Vladimir B

    2015-10-01

    Covering a quarter of the world's tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%-85%), while Basidiomycota was less abundant (14%-24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported. PMID:26549842

  11. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea-A Metagenomic Approach

    Institute of Scientific and Technical Information of China (English)

    Marta Filipa Simoes; Andre Antunes; Cristiane A Ottoni; Mohammad Shoaib Amini; Intikhab Alam; Hanin Alzubaidy; Noor-Azlin Mokhtar; John AC Archer; Vladimir B Bajic

    2015-01-01

    Covering a quarter of the world’s tropical coastlines and being one of the most threat-ened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray man-groves (Avicennia marina) remain poorly characterized, and understanding of their fungal commu-nities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%), while Basidiomycota was less abundant (14%–24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  12. Transcriptome sequencing and analysis of leaf tissue of Avicennia marina using the Illumina platform.

    Directory of Open Access Journals (Sweden)

    Jianzi Huang

    Full Text Available Avicennia marina is a widely distributed mangrove species that thrives in high-salinity habitats. It plays a significant role in supporting coastal ecosystem and holds unique potential for studying molecular mechanisms underlying ecological adaptation. Despite and sometimes because of its numerous merits, this species is facing increasing pressure of exploitation and deforestation. Both study on adaptation mechanisms and conservation efforts necessitate more genomic resources for A. marina. In this study, we used Illumina sequencing of an A. marina foliar cDNA library to generate a transcriptome dataset for gene and marker discovery. We obtained 40 million high-quality reads and assembled them into 91,125 unigenes with a mean length of 463 bp. These unigenes covered most of the publicly available A. marina Sanger ESTs and greatly extended the repertoire of transcripts for this species. A total of 54,497 and 32,637 unigenes were annotated based on homology to sequences in the NCBI non-redundant and the Swiss-prot protein databases, respectively. Both Gene Ontology (GO analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG pathway analysis revealed some transcriptomic signatures of stress adaptation for this halophytic species. We also detected an extraordinary amount of transcripts derived from fungal endophytes and demonstrated the utility of transcriptome sequencing in surveying endophyte diversity without isolating them out of plant tissues. Additionally, we identified 3,423 candidate simple sequence repeats (SSRs from 3,141 unigenes with a density of one SSR locus every 8.25 kb sequence. Our transcriptomic data will provide valuable resources for ecological, genetic and evolutionary studies in A. marina.

  13. Influence of model selection on the predicted distribution of the seagrass Zostera marina

    Science.gov (United States)

    Downie, Anna-Leena; von Numers, Mikael; Boström, Christoffer

    2013-04-01

    There is an increasing need to model the distribution of species and habitats for effective conservation planning, but there is a paucity of models for the marine environment. We used presence (131) and absence (219) records of the marine angiosperm Zostera marina L. from the archipelago of SW Finland, northern Baltic Sea, to model its distribution in a 5400 km2 area. We used depth, slope, turbidity, wave exposure and distance to sandy shores as environmental predictors, and compared a presence-absence method: generalised additive model (GAM), with a presence only method: maximum entropy (Maxent). Models were validated using semi-independent data sets. Both models performed well and described the niche of Z. marina fairly consistently, although there were differences in the way the models weighted the environmental variables, and consequently the spatial predictions differed somewhat. A notable outcome from the process was that with relatively equal model performance, the area actually predicted in geographical space can vary by twofold. The area predicted as suitable for Z. marina by the ensemble was almost half of that predicted by the GAM model by itself. The ensemble of model predictions increased the model predictive capability marginally and clearly shifted the model towards a more conservative prediction, increasing specificity, but at the same time sacrificing sensitivity. The environmental predictors selected into the final models described the potential distribution of Z. marina well and showed that in the northern Baltic the species occupies a narrow niche, typically thriving in shallow and moderately exposed to exposed locations near sandy shores. We conclude that a prediction based on a combination of model results provides a more realistic estimate of the core area suitable for Z. marina and should be the modelling approach implemented in conservation planning and management.

  14. Mushroom Cultivation in South Korea

    OpenAIRE

    Mustafa Kemal Soylu; Mingu Kang

    2016-01-01

    Mushroom cultivation in South Korea is increasing fast last decades. Mushroom cultivation of South Korea is 173577 tones and South Korea gains 800 million dollars income annually. Different kind of mushroom species are cultivated and 31% enoki mushroom (Flammulina velutipes), 26% king oyster (Pleurotus eryngii), 26% oyster mushroom (Pleurotus ostreatus), 13% white buton mushroom (Agaricus bisporus) and 4% rest of the total mushroom Lentinula edodes, Ganoderma lucidum, Phellinus vb. are produc...

  15. Approaches for diversity analysis of cultivable and non-cultivable bacteria in real soil

    Czech Academy of Sciences Publication Activity Database

    Štursa, P.; Uhlík, Ondřej; Kurzawová, V.; Koubek, J.; Ionescu, M.; Strohalm, M.; Lovecka, P.; Macek, Tomáš; Macková, M.

    2009-01-01

    Roč. 55, č. 9 (2009), s. 389-396. ISSN 1214-1178 Institutional research plan: CEZ:AV0Z40550506 Keywords : PCB * contaminated soil * rhizoremediation * SIP Subject RIV: EI - Biotechnology ; Bionics Impact factor: 0.697, year: 2009

  16. DNA evolution in cultivated plants

    Directory of Open Access Journals (Sweden)

    A. LAZANYI

    1987-08-01

    Full Text Available In long cultivated plant species - such as wheat, barley, bean, soya, tomato - during their microevolution from wild to modern cultivated species, the genome size has increased by 200 - 300 %. Presumably the newly acquired DNA of the cultivated species consists both of no coding, repetitive DNA and of new copies of the polygenesis that control the culture-characters. It seems, that in cultivated plants the genetic bases of the gigas-character and of the allometric-growth of the plant organs useful for man, are the amplified polygenesis, which control these characters.

  17. Enterococcus growth on eelgrass (Zostera marina); implications for water quality.

    Science.gov (United States)

    Ferguson, Donna M; Weisberg, Stephen B; Hagedorn, Charles; De Leon, Kristine; Mofidi, Vida; Wolfe, Julia; Zimmerman, May; Jay, Jennifer A

    2016-04-01

    Enterococci are fecal indicator bacteria used to monitor fecal pollution of recreational waters. When enterococci levels exceed health standards, fecal pollution is assumed as the cause. Enterococci growing on plants limit their usefulness as fecal indicator bacteria. Here we examined enterococcal growth on eelgrass in Mission Bay, CA where enterococci levels have exceeded water quality thresholds. A total of 69 eelgrass samples were collected from six sites, shaken to remove enterococci attached to plant surfaces and the eluant filtered onto culture media. Isolates were then identified to species using biochemical methods, and DNA typing by pulsed-field gel electrophoresis was done to assess clonality of strains. Enterococci concentrations among eelgrass ranged from 8 to 14 000 CFU g(-1) dry weight. The most predominant enterococcal species found were Enterococcus casseliflavus and E. hirae followed by E. faecalis. Cluster analysis indicated a high level of clonality among isolates across all species, with clonal isolates consistently associated with individual eelgrass samples. Finding high densities of E. casseliflavus, E. hirae and E. faecalis on eelgrass that included clonal strains indicates the capability of enterococcal growth on eelgrass. Amplification of enterococci on eelgrass presents challenges for regulatory agencies that interpret elevated levels of these bacteria as an indication of fecal pollution. PMID:26976844

  18. Brown: A Taxonomic Analysis of Avian Faunal Remains from Three Sites in Marina Del Rey, Los Angeles County, California

    OpenAIRE

    Fenenga, Gerrit L

    1990-01-01

    A Taxonomic Analysis of Avian Faunal Remains from Three Sites in Marina Del Rey. Los Angeles County, California Joan C. Brown. Coyote Press Archives of California Prehistory No. 30, vii + 71 pp., 8 tables, appendix, 1989, $6.20 (paper).

  19. Growth responses of the mangrove Avicennia marina to salinity: development and function of shoot hydraulic systems require saline conditions

    OpenAIRE

    Hoa T. Nguyen; Stanton, Daniel E.; Schmitz, Nele; Farquhar, Graham D.; Ball, Marilyn C.

    2015-01-01

    Background and Aims Halophytic eudicots are characterized by enhanced growth under saline conditions. This study combines physiological and anatomical analyses to identify processes underlying growth responses of the mangrove Avicennia marina to salinities ranging from fresh- to seawater conditions.

  20. Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina.

    Science.gov (United States)

    Alexiev, Alexandra; Krusor, Megan L; Jospin, Guillaume; Lang, Jenna M; Eisen, Jonathan A; Coil, David A

    2016-01-01

    Here, we present the draft genome sequences for Pseudoalteromonas sp. strain UCD-33C and Pseudoalteromonas lipolytica UCD-48B. Pseudoalteromonas sp. UCD-33C was isolated from Zostera marina roots and P. lipolytica UCD-48B from Z. marina leaf blades, both collected in Woods Hole, MA. These assemblies contain 4,479,285 bp and 4,592,435 bp, respectively. PMID:26893412

  1. Glass bead cultivation of fungi

    DEFF Research Database (Denmark)

    Droce, Aida; Sørensen, Jens Laurids; Giese, H.;

    2013-01-01

    Production of bioactive compounds and enzymes from filamentous fungi is highly dependent on cultivation conditions. Here we present an easy way to cultivate filamentous fungi on glass beads that allow complete control of nutrient supply. Secondary metabolite production in Fusarium graminearum...

  2. Effects of light intensities and photoperiods on growth and proteolytic activity in purple non-sulfur marine bacterium, Afifella marina strain ME (KC205142)

    OpenAIRE

    Sujjat Al-Azad; Tan Kar Soon; Julian Ransangan

    2013-01-01

    Afifella marina strain ME (KC205142), a purple non-sulfur bacterium was isolated from mangrove habitats of Sabah. The effects of light intensities and photoperiods on proteolytic activity in Afifella marina strain ME (KC205142) were investigated. Secretion of proteolytic enzymes in Afifella marina was preliminarily assessed by skim milk agarose media. Subsequently, light intensities, such as, dark, 1000, 1500, 2000, 2500, 3000, 3500, 4000, 4500 and 5000 lux were used to ev...

  3. Rhizosphere O2 dynamics in young Zostera marina and Ruppia maritima

    DEFF Research Database (Denmark)

    Jovanovic, Zeljko; Pedersen, Mia Østergaard; Larsen, Morten;

    2015-01-01

    Zostera marina and Ruppia maritima often share the same habitat, but R. maritima appears more resistant to environmental stress. We investigated the impact of light intensity and water column O2 concentrations on radial oxygen loss (ROL), in young specimens of Z. marina and R. maritima. Planar op...... ability of R. maritima to maintain higher ROL than Z. marina could be an important feature defining its potential for colonizing and maintaining growth in eutrophic sediments....

  4. Contrasting oxygen dynamics in the freshwater isoetid Lobelia dortmanna and the marine seagrass Zostera marina

    DEFF Research Database (Denmark)

    Sand-Jensen, Kaj; Pedersen, Ole; Binzer, Thomas;

    2005-01-01

    the sediment, and aquatic plants differ in aerenchymal volume and resistance to O2 diffusion through the plant and across leaf and root surfaces. The hypothesis that the freshwater isoetid Lobelia dortmanna and the marine seagrass Zostera marina should display pronounced contrasts in intra-plant O2......-sections of the aerenchyma. The major exchange of O2 across roots of L. dortmanna can be accounted for by small intra-plant resistances to diffusion, larger root than leaf surfaces, and greater radial diffusive resistance of leaves than roots. In contrast, the major O2 exchange across leaves than roots of Z...... photosynthetic O2 from roots and low O2 consumption of sediments means that sediment, aerenchyma and water are important O2 sources for respiration during the following night, while Z. marina relies on the water column as the sole source of O2 because its sediments are anoxic. These differences between L...

  5. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    OpenAIRE

    Ahmad Herison; Fredinan Yulianda,; Cecep Kusmana; I Wayan Nurjaya; Luky Adrianto

    2014-01-01

    Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina  becomes important as wave attenuation,  a form of abrasion antidote. Transect-Square and Spot-Check methods were us...

  6. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    OpenAIRE

    Ahmad Herison; Fredinan Yulianda,; Cecep Kusmana; I Wayan Nurjaya; Luky Adrianto

    2014-01-01

    Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina becomes important as wave attenuation, a form of abrasion antidote. Transect-Square and Spot-Check methods were us...

  7. Aesthetic experience in performance art : Marina Abramović the artist is present

    OpenAIRE

    Kırmızı, Defne

    2013-01-01

    This thesis explores the possibility of an embodied, corporeal and transforming aesthetic experience that performance art may reveal. The artistic practice of Marina Abramović, who witnessed and pioneered the paradigm shifts in the performance art sphere, will be examined in conjunction with the performative turn and affective turn that art has been going through. In addition to a comprehensive overview of the former academic studies done on Abramović’s body of work, her latest...

  8. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions

    Directory of Open Access Journals (Sweden)

    Sheng Liu

    2013-10-01

    Full Text Available Heterotrophic dinoflagellates are prevalent protists in marine environments, which play an important role in the carbon cycling and energy flow in the marine planktonic community. Oxyrrhis marina (Dinophyceae, a widespread heterotrophic dinoflagellate, is a model species used for a broad range of ecological, biogeographic, and evolutionary studies. Despite the increasing research effort on this species, there lacks a synthesis of the existing data and a coherent picture of this organism. Here we reviewed the literature to provide an overview of what is known regarding the biology of O. marina, and identify areas where further studies are needed. As an early branch of the dinoflagellate lineage, O. marina shares similarity with typical dinoflagellates in permanent condensed chromosomes, less abundant nucleosome proteins compared to other eukaryotes, multiple gene copies, the occurrence of trans-splicing in nucleus-encoded mRNAs, highly fragmented mitochondrial genome, and disuse of ATG as a start codon for mitochondrial genes. On the other hand, O. marina also exhibits some distinct cytological features (e.g., different flagellar structure, absence of girdle and sulcus or pustules, use of intranuclear spindle in mitosis, presence of nuclear plaque, and absence of birefringent periodic banded chromosomal structure and genetic features (e.g., a single histone-like DNA-associated protein, cob-cox3 gene fusion, 5′ oligo-U cap in the mitochondrial transcripts of protein-coding genes, the absence of mRNA editing, the presence of stop codon in the fused cob-cox3 mRNA produced by post-transcriptional oligoadenylation, and vestigial plastid genes. The best-studied biology of this dinoflagellate is probably the prey and predators types, which include a wide range of organisms. On the other hand, the abundance of this species in the natural waters and its controlling factors, genome organization and gene expression regulation that underlie the unusual

  9. Possibilities for restoration of Zostera marina beds in the Dutch Wadden Sea

    OpenAIRE

    Katwijk, Margaretha Maria van

    2000-01-01

    The Wadden Sea lost its economically valuable seagrass (Zostera marina) beds during the 1930s. The beds never recovered and only sparse beds remain around mean sea level. As the conditions in the Dutch Wadden Sea have improved since the late 1980s (improved water quality, local prohibition of fisheries activities), the University of Nijmegen and Rijkswaterstaat have initiated investigations on the possibilities for restoration of the beds. In this study, it was concluded that potential Zoster...

  10. Oxygen and capacity limited thermal tolerance of the lugworm Arenicola marina: A seasonal comparison

    OpenAIRE

    Schröer, Mareike; Saphörster, Julia; Bock, Christian; Pörtner, Hans-Otto

    2011-01-01

    Lugworms Arenicola marina were collected from Arcachon Bay in two summers and winters of consecutive years. The worms were acclimated to different temperatures (5 and 10 °C for winter animals and 15 °C for summer animals). Each group was investigated over an experimental temperature range concerning its optimum in exercise performance, acute growth rate as well as respiration and ventilation activities to reveal seasonal acclimatisation effects, potential inter-annual differences ...

  11. Four New Jacaranone Analogs from the Fruits of a Beibu Gulf Mangrove Avicennia marina

    Directory of Open Access Journals (Sweden)

    Xiang-Xi Yi

    2014-04-01

    Full Text Available Four new jacaranone analogs, marinoids F–I (1–4, were isolated from the fruits of a Beibu Gulf mangrove Avicennia marina. The structures were elucidated based on analysis of spectroscopic data. Marinoids F and G are shown to be diastereoisomers of chlorocornoside, a new halogen containing marine secondary metabolite. The antioxidant activity of the isolates was evaluated using a cellular antioxidant assay, and 4 showed good antioxidant activity (EC50 = 26 μM.

  12. Effects on cellular energy allocation and total oxyradical capacity in contamination exposed Arenicola marina

    OpenAIRE

    2009-01-01

    Sediment in Frierfjord, Southern Norway is polluted by heavy metals, PAH, PCB, dibenzo-p-dioxins and dibenzofurans. Levels of toxicity in sediment cannot be determined through chemical analyses alone due to biological, chemical and physical interactions with the sediment and biota. This study aimed to assess toxicity through exposure of Arenicola marina to the sediment. Sub-lethal effects in oxidative stress resistance (total oxyradical scavenging capacity- TOSC) and alterations to the energy...

  13. Assessing the Crop Growing Period According to the Climate Change Forecasts for Marina Baixa (SE Spain)

    OpenAIRE

    Herrera, Mario; Moutahir, Hassane; González, Carlos Alberto; Chirino Miranda, Esteban; Bellot Abad, Juan Francisco

    2015-01-01

    The present work aims to assess the likely effects of climate change on the length of growing period (LGP) of crops in Marina Baixa (SE, Spain). LGP can be assessed by a balance between preci- pitation and reference evapotranspiration. Less rainfall and an increased evapotranspiration, forecast by Global Climate Models (GCMs), are considered as a high risk for agriculture. This area is located in a semiarid climate region where water is a very limited resource. It is a typical example of area...

  14. Endotoxin Structures in the Psychrophiles Psychromonas marina and Psychrobacter cryohalolentis Contain Distinctive Acyl Features

    OpenAIRE

    Charles R. Sweet; Alpuche, Giancarlo M.; Corinne A. Landis; Sandman, Benjamin C.

    2014-01-01

    Lipid A is the essential component of endotoxin (Gram-negative lipopolysaccharide), a potent immunostimulatory compound. As the outer surface of the outer membrane, the details of lipid A structure are crucial not only to bacterial pathogenesis but also to membrane integrity. This work characterizes the structure of lipid A in two psychrophiles, Psychromonas marina and Psychrobacter cryohalolentis, and also two mesophiles to which they are related using MALDI-TOF MS and fatty acid methyl este...

  15. Use of passive samplers in pollution monitoring: a numerical approach for marinas.

    Science.gov (United States)

    Yılmaz, A; Karacık, B; Henkelmann, B; Pfister, G; Schramm, K-W; Yakan, S D; Barlas, B; Okay, O S

    2014-12-01

    Triolein-containing semipermeable membrane devices (SPMDs) and butyl rubber (BR) based sorbents were employed as passive samplers in 14 coastal stations of Turkey including shipyards and marinas to characterize time-integrated levels of polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) and their relationship to potential pollution sources. Passive samplers of SPMDs and BR sorbents were deployed for 30days in the spring of 2012. The maximum concentrations of total PAH and PCB compounds sequestered by SPMDs were 3338 ng g(-1) SPMD and 4247 pg g(-1) SPMD. (END)-I and DDT-related compounds were dominant OCP compounds for most of the sites in passive samplers. Total PAH concentrations in SPMDs were found 1.2 to 8 times higher than the concentrations in BRs. However, BR sorbents were able to sample some PAHs which could not be sampled by SPMDs. The concentrations of PCBs and OCPs in BRs were similar or higher than SPMDs. SPMD-data were used to estimate the average ambient water concentrations of the contaminants. Two existing theoretical approaches have been used to derive the concentrations of hydrophobic pollutants in the ambient waters. The results were found very similar and range from 7318 to 183864 pg L(-1) for PAHs, from 2 to 186 pg L(-1) for PCBs, and from 98 to 848 pg L(-1) for OCPs. Furthermore, a simple numerical model was designed to estimate the boat-related water concentrations in marinas by using the seawater data supplied by SPMDs. The model was mainly built on the water concentration and the capacities of a particular marina and then applied to two sites in the second marina. A good correlation was found between the model outputs and SPMD-water data. PMID:25108068

  16. Characterisation of esterases as potential biomarkers of pesticide exposure in the lugworm Arenicola marina (Annelida: Polychaeta)

    International Nuclear Information System (INIS)

    Here, we identify and characterise cholinesterase (ChE) and carboxylesterase (CbE) activities in the body tissues of the sediment dwelling worm Arenicola marina. Exposure to the organophosphorus pesticide azamethiphos yielded an in vitro IC50 of 5 μg l-1 for propionylcholinesterase (PChE). PChE was significantly inhibited in vivo after a 10 day exposure to 100 μg l-1 azamethiphos, equivalent to the recommended aquatic application rate (ANOVA; F = 2.75, P = 0.033). To determine sensitivity to environmental conditions, A. marina were exposed for 10 days to field collected sediments. PChE activity was significantly lower in worms exposed to sediments from an estuary classified to be at high risk from point source pollution by the UK Environment Agency (ANOVA; F = 15.33, P < 0.001). Whilst causality cannot be directly attributed from these latter exposures, they provide an important illustration of the potential utility of esterase activity as a biomarker of environmental quality in this ecologically relevant sentinel species. - This paper provides a preliminary characterisation of esterase enzyme activities in the tissues and body fluids of the sediment dwelling worm Arenicola marina and explores their potential use as biomarkers of organophosphorus pesticide exposure in the marine environment

  17. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

    KAUST Repository

    Alzubaidy, Hanin

    2015-11-10

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in ‘metabolism of aromatic compounds’, ‘mobile genetic elements’, ‘potassium metabolism’ and ‘pathways that utilize osmolytes’ in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  18. Habitat suitability analysis of eelgrass Zostera marina L. in the subtidal zone of Xiaoheishan Island

    Science.gov (United States)

    Zhou, Jian; Wang, Qixiang; Zhao, Wenxi; Yu, Daode; Guan, Shuguang

    2016-01-01

    We present a GIS-based habitat suitability index (HSI) model to identify suitable areas for Zostera marina L. restoration in the subtidal zone of Xiaoheishan Island. The controlling factors in the model, in order of importance, are Secchi depth, sediment composition, water temperature, salinity, current velocity, water depth and nutrient quality. Specific factor piecewise functions have been used to transform parameter values into normalized quality indexes. The weight of each factor was defined using expert knowledge and the analytic hierarchy process (AHP) method. All of the data thus obtained were interpolated using the inverse distance weighted (IDW) interpolation method to create maps for the entire region. In this study, the analysis of habitat suitability in the subtidal zone of Xiaoheishan Island was conducted for four seasons. According to the GIS-based HSI model, the optimal habitat of Zostera marina L. appears in spring, although habitat remains suitable all year round. On the whole, the optimum site for eelgrass restoration is located in the eastern region, followed by the western and southern regions. We believe that the GIS-based HSI model could be a promising tool to select sites for Zostera marina L. restoration and could also be applicable in other types of habitat evaluation.

  19. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

    Science.gov (United States)

    Alzubaidy, Hanin; Essack, Magbubah; Malas, Tareq B; Bokhari, Ameerah; Motwalli, Olaa; Kamanu, Frederick Kinyua; Jamhor, Suhaiza Ahmad; Mokhtar, Noor Azlin; Antunes, André; Simões, Marta Filipa; Alam, Intikhab; Bougouffa, Salim; Lafi, Feras F; Bajic, Vladimir B; Archer, John A C

    2016-02-01

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in 'metabolism of aromatic compounds', 'mobile genetic elements', 'potassium metabolism' and 'pathways that utilize osmolytes' in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea. PMID:26475934

  20. The cryptofauna of Zostera marina (L.): Abundance, biomass and population dynamics

    Science.gov (United States)

    Pihl Baden, Susanne

    Cryptofauna (epifauna passing a 2-mm but retained on a 0.2-mm mesh sieve) of Zostera marina on the Swedish west coast (58°N, 11°E) is dominated by crustaceans, mainly detritivorous tube-building amphipods and harpacticoids. Abundance and biomass of amphipods in two relatively unpolluted Z. marina beds were higher than any data from the literature, with maximum abundance of 80·10 3 ind·m -2 and 1 g AFDW·m -2 bottom. This is at least partly due to the small mesh size used in this investigation. The recruitment of the crustaceans started in late June and was continuous through the rest of the season, whereas the recruitment of the molluscs peaked in late June and July. In a Z. marina bed (Rixö) located 2 km from an oil refinery, the seasonal abundance of amphipods was 15% of the abundance in the other beds, whereas the remaining fauna had about the same density. In Rixö the percentage of female amphipod with empty brood pouches increased during the season. It is suggested that low abundances and fecundity of amphipods in Rixö could result from oil pollution.

  1. A Zostera marina manganese superoxide dismutase gene involved in the responses to temperature stress.

    Science.gov (United States)

    Liu, Jiao; Tang, Xuexi; Wang, You; Zang, Yu; Zhou, Bin

    2016-01-10

    Superoxide dismutase (SOD) is an essential enzyme playing a pivotal role in the protection mechanism against oxidative stress by reducing superoxide radicals. In the present study, the full-length cDNA sequence of manganese superoxide dismutase was identified from Zostera marina (ZmMnSOD) via raid amplification of cDNA ends (RACE) technique and expressed sequence tags (ESTs) analysis. The open reading frame (ORF) encoded a polypeptide of 254 amino acid residues, which shared 69%-77% similarity with previous identified SODs. Analysis of the deduced amino acid revealed conserved features, including functional domains, signature motifs and metal binding sites. Phylogenetic analysis revealed that ZmMnSOD was closer to the SODs from angiosperm than those from other organisms. The mRNA expression level of ZmMnSOD at different temperatures was investigated using real-time PCR and it was significantly up-regulated from 5°C to 15°C, and then dramatically down-regulated. The recombinant ZmMnSOD protein was purified and exhibited Mn(2+) ions dependency specific enzymatic activity and strong antioxidant activity over a wide temperature range. All these results indicate that ZmMnSOD is an authentic member of the plant SOD family and may play important roles in minimizing the effect of oxidative damage in Z. marina against temperature stress and affect the adaptability of Z. marina to global warming. PMID:26410038

  2. Contribución al estudio de las bacterias halofílicas en el mar ecuatoriano

    OpenAIRE

    Villamar, F.

    1987-01-01

    Durante los meses de marzo y abril de 1976, se realizó el estudio de las bacterias marinas en el mar ecuatoriano, las cuales sobrepasan densidades de 10 Bact./ml en el área océanica. Al mismo tiempo frente a las costas del Ecuador disminuyen estos valores entre 500 y 2.500 Bact./ml., excepto en el área del Golfo de Guayaquil, donde se encontró bacterias de origen continental en un gran parche de 106 bact./ml. de acuerdo al diagnóstico bioquímico diferencial, se trata de Bacilos Grammegativos ...

  3. Algunos digéneos de Rhinella marina (Anura: Bufonidae en Colombia Some digeneans of Rhinella marina (Anura: Bufonidae in Colombia

    Directory of Open Access Journals (Sweden)

    Mauricio Bechara

    2010-04-01

    Full Text Available Se estudiaron 40 sapos Rhinella marina Linnaeus, 1758 (24 machos y 16 hembras del Valle de Aburrá, Antioquia, Colombia, 8 de los cuales se encontraron parasitados por 2 especies de digéneos: Pseudosonsinotrema chabaudi (Caballero y Caballero, 1969 Sullivan, 1974 (Pleurogenidae (primer registro para Colombia y para el hospedero y Mesocoelium monas (Rudolphi, 1819 Freitas, 1958 (Brachycoeliidae, previamente registrado para este país. De las 2 especies de helmintos recolectadas, la que alcanzó los mayores niveles de prevalencia (40% y abundancia media (14.7 fue P. chabaudi en San Antonio de Prado, y la intensidad promedio más elevada fue para M. monas, en los sapos de Barbosa (46.7.Eight of 40 Rhinella marina Linnaeus, 1758 (24 males and 16 females from Aburrá Valley, Antioquia, Colombia, were infected with 2 digenea species: Pseudosonsinotrema chabaudi (Caballero y Caballero, 1969 Sullivan, 1974 (Pleurogenidae, which represents new host and country records, and Mesocoelium monas (Rudolphi, 1819 Freitas, 1958 (Brachycoeliidae, which was previously reported for the country. Pseudosonsinotrema chabaudi in San Antonio de Prado reached the highest prevalence levels (40% and mean abundance (14.7, whereas the highest mean intensity was recorded for M. monas in cane toads from Barbosa (46.7.

  4. De novo assembly and characterization of the transcriptome of seagrass Zostera marina using Illumina paired-end sequencing.

    Directory of Open Access Journals (Sweden)

    Fanna Kong

    Full Text Available BACKGROUND: The seagrass Zostera marina is a monocotyledonous angiosperm belonging to a polyphyletic group of plants that can live submerged in marine habitats. Zostera marina L. is one of the most common seagrasses and is considered a cornerstone of marine plant molecular ecology research and comparative studies. However, the mechanisms underlying its adaptation to the marine environment still remain poorly understood due to limited transcriptomic and genomic data. PRINCIPAL FINDINGS: Here we explored the transcriptome of Z. marina leaves under different environmental conditions using Illumina paired-end sequencing. Approximately 55 million sequencing reads were obtained, representing 58,457 transcripts that correspond to 24,216 unigenes. A total of 14,389 (59.41% unigenes were annotated by blast searches against the NCBI non-redundant protein database. 45.18% and 46.91% of the unigenes had significant similarity with proteins in the Swiss-Prot database and Pfam database, respectively. Among these, 13,897 unigenes were assigned to 57 Gene Ontology (GO terms and 4,745 unigenes were identified and mapped to 233 pathways via functional annotation against the Kyoto Encyclopedia of Genes and Genomes pathway database (KEGG. We compared the orthologous gene family of the Z. marina transcriptome to Oryza sativa and Pyropia yezoensis and 11,667 orthologous gene families are specific to Z. marina. Furthermore, we identified the photoreceptors sensing red/far-red light and blue light. Also, we identified a large number of genes that are involved in ion transporters and channels including Na+ efflux, K+ uptake, Cl- channels, and H+ pumping. CONCLUSIONS: Our study contains an extensive sequencing and gene-annotation analysis of Z. marina. This information represents a genetic resource for the discovery of genes related to light sensing and salt tolerance in this species. Our transcriptome can be further utilized in future studies on molecular adaptation to

  5. Fruit protected cultivation in China

    Institute of Scientific and Technical Information of China (English)

    Gao Huajun; Wang Saoming; Wang Jiaxi

    2003-01-01

    Protected fruit cultivation in China has developed very quickly from the early 1990s, and now it is animportant branch in fruit cultivation. A brief review including fruit species, developing history, growing area, output, anddistribution in the whole country is made in the paper. Characteristics of the dominant kinds of greenhouse,environmental control methods, and standards of temperature, humidity, light and CO2 for different fruit species arepresented. Information on varieties, growing benefits, special management practices and other aspects of the main fruitspecies used for protected cultivation are also presented.

  6. Antifouling activity by sea anemone (Heteractis magnifica and H. aurora extracts against marine biofilm bacteria Actividades antiincrustantes de las extractos de las anémonas marinas Heteractis magnifica y H. aurora frente a biofilm de bacterias marinas

    Directory of Open Access Journals (Sweden)

    Subramanian Bragadeeswaran

    2011-07-01

    Full Text Available Sea anemones (Actiniaria are solitary, ocean-dwelling members of the phylum Cnidaria and the class Anthozoa. In this study, we screened antibacterial activity of two benthic sea anemones (Heteractis magnifica and H. aurora collected from the Mandapam coast of southeast India. Crude extracts of the sea anemone were assayed against seven bacterial biofilms isolated from three different test panels. The crude extract of H. magnifica showed a maximum inhibition zone of 18 mm against Pseudomonas sp. and Escherichia coli and a minimum inhibition zone of 3 mm against Pseudomonas aeruginosa, Micrococcus sp., and Bacillus cerens for methanol, acetone, and DCM extracts, respectively. The butanol extract of H. aurora showed a maximum inhibition zone of 23 mm against Vibrio parahaemolyticus, whereas the methanol extract revealed a minimum inhibition zone of 1 mm against V. parahaemolyticus. The present study revealed that the H. aurora extracts were more effective than those of H. magnifica and that the active compounds from the sea anemone can be used as antifouling compounds.Las anémonas de mar (Actiniaria son solitarias, habitantes oceánicos del phylum Cnidaria y de la clase Anthozoa. En este estudio se determina la actividad antibacteriana de dos anémonas bentónicas Heteractis magnifica y H. aurora recolectadas en la costa de Mandapam, sudeste de India. Los extractos crudos de estas anémonas fueron ensayados frente a siete biofilms bacterianos aislados de tres paneles de control distintos. El extracto crudo de la anémona H. magnifica mostró una zona inhibición máxima de 18 mm contra Psudomonas sp. y Escherichia coli y la zona de inhibición mínima de 3 mm fue encontrada frente a Pseudomonas aeruginosa, Micrococus sp. y Bacillus cerens de extractos de metanol, acetona y DCM respectivamente. El extracto de butanol de la anémona H. magnifica mostró una zona de inhibición máxima de 23 mm frente a Vibrio parahemolyticus, mientras que con el estracto de metanol se observó una zona de inhibición mínima de 1 mm frente a V. parahemolyticus. El presente estudio mostró que los extractos H. aurora son más efectivos que los de H. magnifica y que los compuestos activos de las anémonas de mar pueden ser usados como compuestos anti-incrustantes.

  7. Antifouling activity of symbiotic bacteria from sponge Aplysina gerardogreeni

    OpenAIRE

    Aguila-Ramirez, Ruth Noemi; Hernandez-Guerrero, Claudia Judith; Gonzalez-Acosta, Barbara; Id-Daoud, Ghezlane; Hewitt, Samantha; Pope, Josephine; Hellio, Claire

    2014-01-01

    A key area in marine antifoulant research is the discovery of new environmentally friendly solutions that prevent biofilm formation and associated biocorrosion. Taking into consideration the natural mechanisms of marine organisms to protect against epibiosis, new biomimetic solutions can be utilised against biofouling, and marine bacteria are promising agents. Therefore, the goal of this study was to identify cultivable bacteria with antifouling (AF) activity associated with the sponge Aplysi...

  8. Aggregative Behavior of Bacteria Isolated from Canine Dental Plaque

    OpenAIRE

    Elliott, D. R.; Wilson, M; Buckley, C. M. F.; Spratt, D. A.

    2006-01-01

    Interbacterial adhesion of bacteria isolated from canine dental plaque was assessed by performing a visual coaggregation assay. Using conditions mimicking those likely to be encountered in vivo, the entire cultivable plaque microbiota from a single dog was assessed, and eight (6.7%) unique coaggregation interactions were detected for 120 crosses. Transmission electron microscopy was used to visualize several of the bacteria in isolation and as coaggregates, which revealed surface structures t...

  9. Antibacterial activity of some medicinal mangroves against antibiotic resistant pathogenic bacteria

    Directory of Open Access Journals (Sweden)

    Abeysinghe P

    2010-01-01

    Full Text Available The antibacterial activity of the leaves and bark of mangrove plants, Avicennia marina, A. officinalis, Bruguiera sexangula, Exoecaria agallocha, Lumnitzera racemosa, and Rhizophora apiculata was evaluated against antibiotic resistant pathogenic bacteria, Staphylococcus aureus and Proteus sp. Soxhlet extracts of petroleum ether, ethyl acetate, ethanol and water were prepared and evaluated the antibacterial activity using agar diffusion method. Most of the plant extracts showed promising antibacterial activity against both bacterial species. However, higher antibacterial activity was observed for Staphylococcus aureus than Proteus sp. The highest antibacterial activity was shown by ethyl acetate of mature leaf extracts of E. agallocha for Staphylococcus aureus. All ethyl acetate extracts showed higher inhibition against S. aureus while some extracts of chloroform, ethyl acetate and ethanol gave inhibition against Proteus sp. None of the petroleum ether and aqueous extracts showed inhibition against Proteus sp. All fresh plant materials did also show more antibacterial activity against both bacterial strains than did dried plant extracts. Antibacterial activity of fresh and dried plant materials reduced for both bacterial strains with time after extraction. Since L. racemosa and A. marina gave the best inhibition for bacterial species, they were used for further investigations. Charcoal treated plant extracts of L. racemosa and A. marina were able to inhibit both bacterial strains more than those of untreated plant extracts. Phytochemical screening of mature leaf, bark of L. racemosa and leaf extracts of A. marina has been carried out and revealed that leaf and bark contained alkaloids, steroids, triterpenoids and flavonoids. None of the above extracts indicate the presence of saponins and cardiac glycosides. Separated bands of extracts by TLC analysis showed antibacterial activity against S. aureus.

  10. Silicon alleviates cadmium toxicity in Avicennia marina (Forsk.) Vierh. seedlings in relation to root anatomy and radial oxygen loss

    International Nuclear Information System (INIS)

    Highlights: • The inhibition of growth of Avicennia marina due to Cd was alleviated by Si. • Si prompted the development of the apoplastic barrier in the roots. • Si increased the amount of ROL and the degree of Mn plaque. -- Abstract: The effects of Si on growth, the anatomy of the roots, radial oxygen loss (ROL) and Fe/Mn plaque on the root surface were investigated in Avicennia marina (Forsk.) Vierh. seedlings under Cd stress. Si prompted the growth of seedlings and reduced the Cd concentration in the root, stem and leaf of A. marina. Si prompted the development of the apoplastic barrier in the roots, which may be related to the reduction of Cd uptake. The higher amount of ROL and Mn plaque on the root surface due to Si were also related to the promotion of Cd tolerance in A. marina seedlings. Therefore, it is concluded that the alteration of the anatomy of the roots, the increase of ROL and Mn plaque of A. marina seedlings play an important role in alleviation of Cd toxicity due to Si

  11. Advantage Provided by Iron for Escherichia coli Growth and Cultivability in Drinking Water

    Science.gov (United States)

    Appenzeller, Brice M. R.; Yañez, Carolina; Jorand, Frederic; Block, Jean-Claude

    2005-01-01

    The presence of iron, used both as a nutrient and as an electron acceptor, was demonstrated to give an advantage to Escherichia coli bacteria in drinking water. Slight additions of ferrous sulfate to water with initial low iron concentrations led to a significant increase in the number of E. coli bacteria. The presence of ferric oxide in water under anaerobic conditions increased bacterial cultivability. PMID:16151163

  12. Cepas nativas del bacterioneuston marino y su actividad inhibitoria de bacterias ictiopatógenas

    Directory of Open Access Journals (Sweden)

    Jorge León

    2014-06-01

    Full Text Available En la literatura científica, las bacterias marinas han sido consideradas con frecuencia como productores de sustancias antibacterianas. En este estudio, se investigó el potencial de actividad antibiótica in vitro de cepas nativas de bacterioneuston marino aisladas de las pozas intermareales de Montemar, Bahía de Valparaiso, Chile. Se aislaron 71 cepas neustónicas antagonistas a Staphylococcus aureus ATCC 11632. Veinticinco de ellas, productoras de sustancias fuertemente inhibitorias, fueron evaluadas por su antagonismo frente a una colección de 15 bacterias ictiopatógenas. Aplicando métodos clásicos para bacterias marinas, se caracterizaron fenotípicamente orientados a la identificación. Los resultados de antibiosis indican que la totalidad cle las ictiopatógenas en prueba son susceptibles a la actividad inhibitoria de las cepas neustónicas, siendo V anguillarum NCMB 2133, V ordalii 84/2559 y V tubiashii EX1 las más sensibles. Entre las cepas aisladas del neuston se identificaron miembros de los géneros Vibrio spp. (28%, Flavobacterium spp. (12%, Alteromonas-Marinomonas (12%, Pseudomonas spp (8% y Micrococcus spp, (4%. Nueve cepas (36% no fueron identificadas. Los resultados de actividades inhibitorias frente a ictiopatógenos sugieren que dichas cepas o sus productos pudieran ser útiles en actividades de cultivos intensivos de maricultura de peces, moluscos y crustáceos.

  13. Identification and characterization of a chitin-binding protein purified from coelomic fluid of the lugworm Arenicola marina defining a novel protein sequence family

    DEFF Research Database (Denmark)

    Vitashenkova, Nina; Moeller, Jesper Bonnet; Leth-Larsen, Rikke; Schlosser, Anders; Lund, Kit Peiter; Tornøe, Ida; Vitved, Lars; Hansen, Søren; Willis, Anthony; Kharazova, Alexandra D; Skjødt, Karsten; Sorensen, Grith Lykke; Holmskov, Uffe

    2012-01-01

    We have isolated a novel type of lectin named Arenicola marina lectin-1 (AML-1) from the lugworm Arenicola marina. The lectin was purified from the coelomic fluid by affinity chromatography on a GlcNAc-derivatized column and eluted with GlcNAc. On SDS-PAGE, AML-1 showed an apparent molecular mass...

  14. Current status and ecological roles of Zostera marina after recovery from large-scale reclamation in the Nakdong River estuary, Korea

    Science.gov (United States)

    Park, Sang Rul; Kim, Jong-Hyeob; Kang, Chang-Keun; An, Soonmo; Chung, Ik Kyo; Kim, Jeong Ha; Lee, Kun-Seop

    2009-01-01

    Large Zostera marina meadows (covering 13.6 km 2) existed in the Nakdong River estuary on the south coast of Korea until the mid-1980s, but these Z. marina beds nearly disappeared due to reclamation of adjacent mud flats for the construction of a port and industrial complex during the late 1980s. Partial recovery of Z. marina meadows occurred recently, and Z. marina coverage of about 0.3 km 2 was observed in this estuary. In this study, shoot morphology, density, biomass, productivity, and tissue nutrient content were measured to evaluate the current status of the Z. marina meadows by comparing these data to those for persistent seagrass meadows in similar geographical areas. Additionally, we examined the ecological roles of Z. marina in this estuary after recovery from the large-scale disturbance. Shoot density (151 shoots m -2) and total biomass (141 g DW m -2) in the estuary were similar to those reported from other Z. marina meadows in Korea. Annual leaf production (1726 g DW m -2 y -1) was higher than generally observed for Z. marina in other geographical areas. These results imply that the existing Z. marina meadows in this estuary have adjusted to local environmental conditions that changed after large-scale reclamation. Estimated annual whole plant carbon (C) and nitrogen (N) incorporations based on shoot production and tissue C and N content were 810.0 g C m -2 y -1 and 59.7 g N m -2 y -1, respectively. These values were equivalent to 2.4 × 10 5 kg C y -1 and 1.8 × 10 4 kg N y -1 for all Z. marina beds in the Nakdong River estuary. This high C and N incorporation into Z. marina tissues suggests that existing Z. marina meadows play important roles in C and N cycles in this estuary. Although the currently existing Z. marina beds in this estuary are persisting and play an important ecological role, anthropogenic factors that cause seagrass declines still affect the estuary. Thus, effective management and monitoring of Z. marina beds and environmental

  15. Back To Bacteria.

    Science.gov (United States)

    Flannery, Maura C.

    1997-01-01

    Explores new research about bacteria. Discusses bacterial genomes, archaea, unusual environments, evolution, pathogens, bacterial movement, biofilms, bacteria in the body, and a bacterial obsession. Contains 29 references. (JRH)

  16. Exposure of Cucurbita pepo to DDE-contamination alters the endophytic community: A cultivation dependent vs a cultivation independent approach.

    Science.gov (United States)

    Eevers, N; Hawthorne, J R; White, J C; Vangronsveld, J; Weyens, N

    2016-02-01

    2,2-bis(p-chlorophenyl)-1,1-dichloro-ethylene (DDE) is the most abundant and persistent degradation product of the pesticide 2,2-bis(p-chlorophenyl)-1,1,1-trichloroethane (DDT) and is encountered in contaminated soils worldwide. Both DDE and DDT are classified as Persistent Organic Pollutants (POPs) due to their high hydrophobicity and potential for bioaccumulation and biomagnification in the food chain. Zucchini (Cucurbita pepo ssp. pepo) has been shown to accumulate high concentrations of DDE and other POPs and has been proposed as a phytoremediation tool for contaminated soils. The endophytic bacteria associated with this plant may play an important role in the remedial process. Therefore, this research focuses on changes in endophytic bacterial communities caused by the exposure of C. pepo to DDE. The total bacterial community was investigated using cultivation-independent 454 pyrosequencing, while the cultivable community was identified using cultivation-dependent isolation procedures. For both procedures, increasing numbers of endophytic bacteria, as well as higher diversities of genera were observed when plants were exposed to DDE. Several bacterial genera such as Stenotrophomonas sp. and Sphingomonas sp. showed higher abundance when DDE was present, while, for example Pseudomonas sp. showed a significantly lower abundance in the presence of DDE. These findings suggest tolerance of different bacterial strains to DDE, which might be incorporated in further investigations to optimize phytoremediation with the possible use of DDE-degrading endophytes. PMID:26683261

  17. 红树林秋茄、桐花树、白骨壤混交生长效果研究%Study on the Growth Effect of Mangrove Kandelia candel,Aegiceras corniculatum and Avicennia marina

    Institute of Scientific and Technical Information of China (English)

    陈世勇

    2014-01-01

    在海滩涂上栽培秋茄、桐花树、白骨壤,经过11a的经营管理,对红树林秋茄、桐花树、白骨壤林木的生长量进行调查分析。结果表明:红树林秋茄、桐花树、白骨壤混交林的林木生长,均比秋茄、桐花树、白骨壤纯林的林木生长效果好。混交林生长的林木树高、胸径、枝下高、树冠,分别比纯林林木生长的树木高大7.69%、7.5%、11.11%,胸径粗2.17%、11.41%、6.67%,枝下高大2.01%、10.95%、8.57%,冠幅大5.00%、10.53%、13.50%。红树林秋茄、桐花树、白骨壤林木在浅潮位生长,比中潮位林木生长效果好,支柱根大、板状根系发达,吸收海水污染物强,能将盐类物质通过叶片光合作用排到植物体外,可去氮和磷等污染物,净化海边环境,防浪护堤,防止海岸侵蚀,起到保护生态环境作用。%The cultivation of Kandelia candel,Aegiceras corniculatum and Avicennia marina in the beach, through the management of 11a,to investigate and analyze the volume growth,the Mangrove Kandelia can-del,Aegiceras corniculatum,Avicennia marina trees. The results show that:Kandelia candel,Aegiceras cornic-ulatum,Avicennia marina,mixed forest tree growth,than Kandelia candel,Aegiceras corniculatum,Avicennia marina,pure forest growth effect is good. Mixed forest trees tree height,DBH,height under branch,crown,re-spectively than those of pure forest grown trees tall and 7.69%,7.5%,11.11%,2.17%,11.41%,6.67% in di-ameter,branch 2.01%,tall 10.95%,8.57%,5%,10.53%,13.50% crown. Kandelia candel,Aegiceras cornicula-tum,Avicennia marina in the shallow water,tree growth,than the tide in forest growth effect is good,the prop roots,plate-like roots,absorb water pollutants can be strong,salts,row to plants in vitro through photo-synthesis,can go to nitrogen and phosphorus and other pollutants,purification of sea environment,anti wave support the waves,coastal erosion,to protect the ecological environment

  18. 红树白骨壤幼苗对水中重金属的吸附性能研究%Removal of Heavy Metal Ions with Avicennia marina Seedling

    Institute of Scientific and Technical Information of China (English)

    王一兵; 柯珂; 陈奕君; 张荣灿; 雷富

    2015-01-01

    Objective]The absorption capabilities of Cu,Pb,Zn and Cd by Avicennia marina seedling were investigated to reduce the severe pollution in the offshore marine areas of Guangxi.[Methods]The Avicennia marina seedlings were obtained from the hypocotyls planted in sands with hoagland’s fluid,and then were cultured in hoagland’s fluid with dif-ferent concentrations of heavy metals.After 35 day’s cultivation,the contents of heavy met-als in Avicennia marina seedlings were determined by microwave digestion and atomic ab-sorption spectrometry.[Results]The increase of heavy metals concentration in the culture fluids led to the increase of heavy metals in the seedlings.The highest amount of heavy met-al is 980.78 μg/g of Cu,1623.03 μg/g of Pb,446.21 μg/g of Zn and 69.41 μg/g of Cd,re-spectively.The amounts of heavy metals in different part of seedlings is root > stem >leaf.This result meant that the heavy metal contents mainly were accumulated in root.The transport capability for different kind of heavy metals in the root and stem of seedlings were different.The transportation from easy to diffi-cult in seedling is Zn> Cu> Cd> Pb.[Conclu-sion]The Avicennia marina seedlings showed good absorption capabilities to 4 kinds of heavy metals in aqueous solution,especially to Pb and Cu.The Avicennia marina is a pro-spective plant for restoring the heavy metal pollution in estuary and offshore marine areas.%【目的】针对广西近岸海域重金属污染越来越严重的问题,研究红树白骨壤幼苗对水中重金属(Cu,Pb, Zn,Cd)的吸附去除性能。【方法】红树白骨壤幼苗采用砂培法由胚轴栽培而得,配制不同浓度混合重金属培养液对红树白骨壤幼苗胁迫培养35 d 后采用原子吸收光谱法测定其体内的重金属含量。【结果】随着培养液中重金属浓度的升高,红树白骨壤幼苗体内的重金属含量也逐渐增加,最高含量分别达到 Cu 980.78μg/g, Pb 1623.03

  19. Nutrient and caloric dynamics in Avicennia marina leaves at different developmental and decay stages in Zhangjiang River Estuary, China

    Science.gov (United States)

    Zhou, Hai-Chao; Wei, Shu-Dong; Zeng, Qi; Zhang, Li-Hua; Tam, Nora Fung-yee; Lin, Yi-Ming

    2010-03-01

    Avicennia marina is a typical mangrove species in the subtropical coastlines of China. The main objective of this study was to assess nutrient and caloric dynamics in A. marina leaves at different developmental and decay stages. Decomposition studies using litter bags suggested that the time required for the loss of half of the initial dry weight ( t50) was 19 days. The extracts of A. marina leaves contained non-tannin phenolics and tannin phenolics (hydrolysable tannin), but no condensed tannin. Non-tannin phenolics and tannin phenolics contents did not differ significantly from each other at various developmental stages, but decreased rapidly during leaf decomposition. Avicennia marina leaves had high N levels, and both N and P concentrations decreased significantly during senescence. During decomposition, N concentration of the leaf litter increased gradually but the phosphorus concentration showed a decrease in the first week, and both N and P remained the same towards the end of the experiment. The gross caloric value (GCV) of mature leaves was significantly higher than those of young and senescent leaves, while ash-free caloric value (AFCV) did not change significantly during leaf development and senescence. During leaf decomposition, both GCV and AFCV increased gradually and remained the same at late stages. In subtropical Zhangjiang River Estuary, high N levels and lack of condensed tannins in A. marina leaves were responsible for the fast rate of decay. Non-tannin phenolics and tannin phenolics had no great effect on rate of decay. Nitrogen resorption during leaf senescence, and high litter decomposition followed by nitrogen immobilization are the important nutrient conservation strategy for A. marina.

  20. Photosystem Trap Energies and Spectrally-Dependent Energy-Storage Efficiencies in the Chl d-Utilizing Cyanobacterium, Acaryochloris Marina

    Science.gov (United States)

    Mielke, Steven P.; Kiang, Nancy Y.; Blankenship, Robert E.; Mauzerall, David

    2012-01-01

    Acaryochloris marina is the only species known to utilize chlorophyll (Chl) d as a principal photopigment. The peak absorption wavelength of Chl d is redshifted approx. 40 nm in vivo relative to Chl a, enabling this cyanobacterium to perform oxygenic phototrophy in niche environments enhanced in far-red light. We present measurements of the in vivo energy-storage (E-S) efficiency of photosynthesis in A. marina, obtained using pulsed photoacoustics (PA) over a 90-nm range of excitation wavelengths in the red and far-red. Together with modeling results, these measurements provide the first direct observation of the trap energies of PSI and PSII, and also the photosystem-specific contributions to the total E-S efficiency. We find the maximum observed efficiency in A. marina (40+/-1% at 735 nm) is higher than in the Chl a cyanobacterium Synechococcus leopoliensis (35+/-1% at 690 nm). The efficiency at peak absorption wavelength is also higher in A. marina (36+/-1% at 710 nm vs. 31+/-1% at 670 nm). In both species, the trap efficiencies are approx. 40% (PSI) and approx. 30% (PSII). The PSI trap in A. marina is found to lie at 740+/-5 nm, in agreement with the value inferred from spectroscopic methods. The best fit of the model to the PA data identifies the PSII trap at 723+/-3 nm, supporting the view that the primary electron-donor is Chl d, probably at the accessory (ChlD1) site. A decrease in efficiency beyond the trap wavelength, consistent with uphill energy transfer, is clearly observed and fit by the model. These results demonstrate that the E-S efficiency in A. marina is not thermodynamically limited, suggesting that oxygenic photosynthesis is viable in even redder light environments.

  1. Heavy metal contamination in sediments and mangroves from the coast of Red Sea: Avicennia marina as potential metal bioaccumulator.

    Science.gov (United States)

    Usman, Adel R A; Alkredaa, Raed S; Al-Wabel, M I

    2013-11-01

    The aim of this study was to investigate the concentrations and pollution status of heavy metals (Cu, Cd, Ni, Pb, Zn and Cr) in the mangrove surface sediments from the Farasan Island, Coast of Red Sea, Saudi Arabia. The ability of mangroves (Avicennia marina) to accumulate and translocate heavy metal within their different compartments was also investigated. Five sampling sites were chosen for collection of sediments and different compartments (leaf, branch and root) of A. marina. The results showed that the maximum and average concentrations of Cd, Cu and Pb in the studied area exceeded their world average concentration of shale. Additionally, only the maximum concentration of Zn exceeded its world average shale concentration. Based on the quality guidelines of sediment (SQGs), the collected sediment samples were in moderate to heavy rate for Cu, non-polluted to heavy rate for Pb and Zn, and non-polluted to moderate rate for Cr and Ni. The average metal concentrations of A. marina in the studied area were observed in the order Cu (256.0-356.6mgkg(-1))>Zn (29.5-36.8mgkg(-1))>Cr (8.15-14.9mgkg(-1))>Ni (1.37-4.02mgkg(-1))>Cd (not detectable-1.04mgkg(-1))>Pb (not detectable). Based on bio-concentration factors (BCF), their most obtained values were considered too high (>1), suggesting that A. marina can be considered as a high-efficient plant for bioaccumulation of heavy metals. Among all metals, Cu and Cr were highly bio-accumulated in different parts of A. marina. In terms of heavy metal contamination control via phyto-extraction, our findings suggest also that A. marina may be classified as potential accumulator for Cu in aboveground parts, as indicated by higher metal accumulation in the leaves combined with bio-concentration factor (BCF) and translocation factor (TF) values >1. PMID:24011858

  2. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    Directory of Open Access Journals (Sweden)

    Ahmad Herison

    2014-04-01

    Full Text Available Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina  becomes important as wave attenuation,  a form of abrasion antidote. Transect-Square and Spot-Check methods were used to determine the existing condition of A.marina mangrove forests. Autocad program, coordinate converter, Google Earth, Google Map, and Arc View were applied in process of making mangrove distribution map. In western of research location exactly at Station 1 and Station 2, the density value of mangrove was 450 and 825 tree ha-1, respectively with  sparse category because they were contaminated by waste and litter. In eastern of research location namely Station 3, Station 4, and Station 5 the mangroves grow well with density value of 650 (sparse, 1,500 (very dense, and 1,200 tree ha-1 (fair, respectively, eventhough the contamination still happened. The mangrove forests around the stations do not function as wave attenuation because there were many waterfront constructions which have replaced the function of mangrove forests to damp the wave. In short, it can be stated that the mangrove's function has changed in a case of wave attenuation. The function of mangrove forests is not determined by mangrove forest density but it is determined by mangrove's free position.Keywords: Avicennia marina, mangrove, wave attenuation, waterfront constructions

  3. Algas marinas bentónicas de la Isla Gorgona, costa pacífica colombiana

    OpenAIRE

    Mónica Murillo Muñoz; Enrique Javier Peña Salamanca

    2014-01-01

    Se presenta el listado de las algas marinas bénticas del Parque Nacional Natural Isla Gorgona, el inventario corresponde a la flora algal asociada a los diferentes ambientes marinos de la isla, a saber: arrecifes coralinos y fondos blandos. El monitoreo de las comunidades de algas se llevó a cabo entre octubre de 2010 y mayo de 2011, se realizó una estimación de abundancia y cobertura para lo cual se establecieron transeptos paralelos a la línea de costa y se evaluó el porcentaje de cobertura...

  4. Deposition, Decomposition. Losing the Body Sublime: Marina Abramović between Performance and Performativity

    OpenAIRE

    Capasso, Angelo

    2015-01-01

    Marina Abramović is the artist par excellence whose work can be identified with Performance Art. Abramović began performing in the heyday of Performance Art, the seventies. She continued performing during the crisis years of performance art in the eighties, then brought new ideas to it when it resurfaced internationally at the beginning of the nineties in different forms. Starting from her first Museum retrospective at MoMA The Artist is Present (2010), and the institution of the The Mari...

  5. Transformaciones demográficas y paisajísticas en la Marina Baixa

    OpenAIRE

    Quereda Sala, José

    1986-01-01

    En este trabajo se pone de manifiesto la espectacular transformación demográfica y paisajística operada en la Marina Baixa a partir de 1960. El factor decisivo ha sido un colosal desarrollo turístico que ha duplicado la población (120.000 hbts.) en las últimas décadas y determinado una zonificación del espacio comarcal a partir de la conurbación surgida a lo largo de los 66 Km. de costa.

  6. Viabilitat d'una plataforma de generació marina amb aerogeneradors i boies

    OpenAIRE

    Vives Uyà, Francesc

    2013-01-01

    El present Treball Fi de Grau pretén avaluar la viabilitat d’implementar una plataforma de generació marina formada per turbines eòliques i boies marines amb l’objectiu de captar l’energia de les onades situada a la costa basca, ja que és un dels indrets on hi ha un major recurs eòlic i undimotriu. El Treball Fi de Grau inclou una primera secció de teoria que proporciona els coneixements suficients per implementar una plataforma d’aquestes característiques. A la segona part ...

  7. El diario Convicción: entre Massera y la Marina

    OpenAIRE

    Borrelli, Marcelo Hernán

    2008-01-01

    El diario Convicción (1978-1983) nació vinculado a la Marina argentina y al proyecto político del almirante Emilio Eduardo Massera, jefe máximo del arma durante los dos primeros años del autodenominado Proceso de Reorganización Nacional. Esta situación dio lugar a un emprendimiento periodístico original, que formaba parte de lo que podría denominarse “la prensa del Proceso”, a diferencia de los medios tradicionales, que deben ser abordados desde su propia historia, dando cuenta de su comporta...

  8. Composición Esterólica de la Esponja Marina Xestospongia Muta

    OpenAIRE

    Carmenza Duque; Alejandro Martínez; Gustavo Peñuela

    2009-01-01

    De la esponja marina Xestospongia muta recolectada en la bahía de Santa Marta, Caribe Colombiano, se aislaron por Cromatografía en Columna (CC) sobre Silica gel, eluyendo con Benceno: Acetato de Etilo 10:2, dos fracciones esteróiicas; XMl (Rf = 0,28,Si02/Benceno; AcOEt 10:2) y XM2 (Rf = 0,24,SiO2/Benceno : AcOEt 10:2), Los esteróles presentes en estas dos fracciones fueron sometidos a Cromatografía Liquida de Alta Eficiencia (CLAE) preparativa y analizados por Cromatografía de Gases (CG) y Cr...

  9. Utjecaj propil galata i ekstrakta ružmarina na oksidacijsku stabilnost smjese biljnih ulja

    OpenAIRE

    Moslavac, T.; Pozderović, A.; Pichler, Anita; Volmut, Katica

    2010-01-01

    U ovom radu istraživan je utjecaj sintetskog antioksidansa propil galata (0,01 %) i prirodnog ekstrakta ružmarina Oxy´Less®CS (0,1 %) i StabilEnhance®OSR (0,1 %) na oksidacijsku stabilnost smjese suncokretovog ulja i ostalih vrsta biljnih ulja (50:50). Istraživana je smjesa suncokretovog ulja (50 %) i ostalih vrsta biljnih ulja (50 %): sojino ulje, ulje kukuruzne klice, repičino ulje i ulje koštica grožđa. Oksidacijska stabilnost različitih smjesa biljnih ulja, sa i bez dodanog sintetskog i p...

  10. Posibilidades de cultivo de nuevas especies marinas en el área mediterránea

    OpenAIRE

    Fernández Aldana, Juan Manuel

    2015-01-01

    La acuicultura, el cultivo y cría de animales y plantas acuáticas, representa en la actualidad una fuente esencial de proteína animal y vegetal altamente saludable y nutritiva, proporcionando un sistema de vida y de ingresos en todo el mundo. La acuicultura además de ser un motor para el desarrollo social y económico de las áreas costeras marinas y fluviales mundiales, supone en muchas regiones subdesarrolladas una garantía de alimento de alta calidad y es clave en la seguridad alimentaria de...

  11. Inhibitory Activity of Avicennia marina, a Medicinal Plant in Persian Folk Medicine, against HIV and HSV

    OpenAIRE

    Namazi, Rahele; Zabihollahi, Rezvan; Behbahani, Mandana; Rezaei, Abbas

    2013-01-01

    Avicennia marina (Avicenniaceae) is a species of mangrove tree used for treatment of small pox lesions in Persian folk medicine. The antiviral activity of methanol, ethanol, water, chloroform and n-hexane extracts was evaluated against HIV-1 and HSV. Methanol extract had the highest antiviral activity and the most polar fraction of this extract (fraction D) inhibited HSV with TI and SI values of 57.1 and 133; however, it showed mild activity against HIV with SI value of 6.25 (fraction 3). The...

  12. New Antioxidative Secondary Metabolites from the Fruits of a Beibu Gulf Mangrove, Avicennia marina

    Directory of Open Access Journals (Sweden)

    Cheng-Hai Gao

    2014-07-01

    Full Text Available Further chemical investigation of the fruits of the mangrove, Avicennia marina, afforded three new phenylethyl glycosides, marinoids J–L (1–3, and a new cinnamoyl glycoside, marinoid M (4. The structures of isolates were elucidated on the basis of extensive spectroscopic analysis and by comparison of the data with those of related secondary metabolites. The antioxidant activity of the isolates was evaluated using the cellular antioxidant assay (CAA, and compounds 1–4 showed antioxidant activities, with EC50 values ranging from 23.0 ± 0.71 μM to 247.8 ± 2.47 μM.

  13. Genetic diversity in three populations of Avicennia marina along the eastcoast of India by RAPD markers.

    Science.gov (United States)

    Hazarika, Dimendra; Thangaraj, M; Sahu, Sunil Kumar; Kathiresan, K

    2013-05-01

    Genetic diversity was analysed in three populations of the mangrove species, Avicennia marina by using random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR). Ten random decamer primers were used to score the diversity from three locations of eastcoast of India: Parangipettai (Tamil Nadu), Kakkinada (Andhra Pradesh) and Sundarbans (West Bengal). These primers produced 388 scorable DNA fragments, of which 252 (64.98%) were polymorphic, 182 (46.90%) were monomorphic, and 14 (3.61%) were unique. RAPD banding patterns displayed variations between and within the populations, while, there was no morphological variation. PMID:24617156

  14. Guía de las especies introducidas marinas y costeras de Colombia.

    OpenAIRE

    2011-01-01

    Este libro tiene como objetivo presentar una lista ilustrada preliminar de las especies identificadas y registradas como exóticas sobre los ambientes marino-costeros de Colombia hasta el momento, o de las cuales se tiene alguna evidencia de su presencia, con el fin de aportar información sobre el estado de la biodiversidad marina colombiana, contribuyendo con información de línea base que servirá para la elaboración de planes de contingencia ante posibles amenazas. Así mismo, ofrece una lista...

  15. Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

    DEFF Research Database (Denmark)

    Hasler-Sheetal, Harald; Holmer, Marianne

    2015-01-01

    Gaseous sulfide intrusion into seagrasses growing in sulfidic sediments causes little or no harm to the plant, indicating the presence of an unknown sulfide tolerance or detoxification mechanism. We assessed such mechanism in the seagrass Zostera marina in the laboratory and in the field with...... well as being stored as sulfate throughout the plant. We conclude that avoidance of sulfide exposure by reoxidation of sulfide in the rhizosphere or aerenchyma and tolerance of sulfide intrusion by incorporation of sulfur in the plant are likely major survival strategies of seagrasses in sulfidic...

  16. Mentoring Away the Glass Ceiling in Academia: A Cultured Critique edited by Brenda L. H. Marina

    OpenAIRE

    Campos, Magali

    2016-01-01

    Mentoring Away the Glass Ceiling in Academia: A Cultured Critiqued (2015) edited by Brenda L. H. Marina, is a comprehensive examination of women’s experiences in various stages in academia and the way in which mentoring can serve as a tool to break the glass ceiling that keep many women from reaching high positions in academia.Over a qualitative approach this book brings together narratives and counternarratives of women in academia to explore the ways mentorship can help the diversity gap fo...

  17. Effects of Ammonium and Nitrite on Growth and Competitive Fitness of Cultivated Methanotrophic Bacteria▿

    OpenAIRE

    Nyerges, Györgyi; Han, Suk-Kyun; Stein, Lisa Y.

    2010-01-01

    The effects of nitrite and ammonium on cultivated methanotrophic bacteria were investigated. Methylomicrobium album ATCC 33003 outcompeted Methylocystis sp. strain ATCC 49242 in cultures with high nitrite levels, whereas cultures with high ammonium levels allowed Methylocystis sp. to compete more easily. M. album pure cultures and cocultures consumed nitrite and produced nitrous oxide, suggesting a connection between denitrification and nitrite tolerance.

  18. Relations between soil structure, number of selected groups of soil microorganisms, organic matter content and cultivation

    Directory of Open Access Journals (Sweden)

    J. Stawiński

    1996-03-01

    Full Text Available The aim of this work was to fiut relations between the number of selected groups of soil microorganisms, water stability of soil aggregates, soil porosity and the organic matter content on the basis of field experiment. Two types of soil were used simultaneously for the research: chernozemic rendzina and brown soil. Rotation system was used in plant cultivation. Chemical, physical and microbiological analyses were carried out on the control object and on objects with organic fertilizers and mineral fertilizers N, P, K. Differences in the sum of fractions of organic C, chiefly in the easily oxidizing fractions in experimental fields on rendzina, in comparison to those on brown soil, can be the result of the predominance of zymogenous bacteria over autochtonous bacteria in the rendzina. Easily oxidizable fractions of C contained in the organic substance of particular fields can be utilized by a high ratio of zymogenous bacteria in the soil samples. It should be noted that characteristic differences in the number of bacteria have been observed in the two types of soils examined. The number of autochtonous microorganisms in brown soil was twice as much as in rendzina. Zymogenous microorganisms constitute more than 90 % of the total number of microorganisms in rendzina. Under the cultivation of red clover an increase of water stability of soil aggregates was stated. From the porosimetric analyses no changes under different cultivation of two soils were observed. The ratio of microorganisms was connected with the type of soil and the system of cultivation.

  19. Auditoría y evaluación energética de Marina Port Vell

    OpenAIRE

    Díaz Llobet, Mari Carmen; Suárez Gallegos, Dennys

    2014-01-01

    [CASTELLÀ] Marina Port Vell quiere ser una organización activa en la protección climática y reducción de emisiones de efecto invernadero. Por éste motivo, uno de sus objetivos el presente año es establecer la norma ISO: 50001 de gestión de energía. Para conseguirlo, la empresa Equipo de Ingenieros de Edificación SCP, desde marzo del presente año, ha procedido a realizar parte imprescindible de ese objetivo, que es la evaluación energética de los edificios de la marina, colabora...

  20. Substratum interfacial energetic effects on the attachment of marine bacteria

    Science.gov (United States)

    Ista, Linnea Kathryn

    Biofilms represent an ancient, ubiquitous and influential form of life on earth. Biofilm formation is initiated by attachment of bacterial cells from an aqueous suspension onto a suitable attachment substratum. While in certain, well studied cases initial attachment and subsequent biofilm formation is mediated by specific ligand-receptor pairs on the bacteria and attachment substratum, in the open environment, including the ocean, it is assumed to be non-specific and mediated by processes similar to those that drive adsorption of colloids at the water-solid interface. Colloidal principles are studied to determine the molecular and physicochemical interactions involved in the attachment of the model marine bacterium, Cobetia marina to model self-assembled monolayer surfaces. In the simplest application of colloidal principles the wettability of attachment substrata, as measured by the advancing contact angle of water (theta AW) on the surface, is frequently used as an approximation for the surface tension. We demonstrate the applicability of this approach for attachment of C. marina and algal zoospores and extend it to the development of a means to control attachment and release of microorganisms by altering and tuning surface thetaAW. In many cases, however, thetaAW does not capture all the information necessary to model attachment of bacteria to attachment substrata; SAMs with similar thetaAW attach different number of bacteria. More advanced colloidal models of initial bacterial attachment have evolved over the last several decades, with the emergence of the model proposed by van Oss, Chaudhury and Good (VCG) as preeminent. The VCG model enables calculation of interfacial tensions by dividing these into two major interactions thought to be important at biointerfaces: apolar, Lifshitz-van der Waals and polar, Lewis acid-base (including hydrogen bonding) interactions. These interfacial tensions are combined to yield DeltaGadh, the free energy associated with

  1. Isolation, cultivation, and in vitro susceptibility testing of Borrelia burgdorferi sensu lato: A review

    Directory of Open Access Journals (Sweden)

    Veinović Gorana

    2013-01-01

    Full Text Available Lyme borreliosis is the most common vector-borne disease in the northern hemisphere. The agents of Lyme borreliosis are borrelia, bacteria of the family Spirochaetaceae, which are grouped in Borrelia burgdorferi sensu lato species complex. Borreliae are fastidious, slow-growing and biochemically inactive bacteria that need special attention and optimal conditions for cultivation. The isolation of Borrelia from clinical material and their cultivation is a time-consuming and demanding procedure. Cultivation lasts from 9 up to 12 weeks, which is much longer than is necessary to grow most other human bacterial pathogens. Although B. burgdorferi sensu lato is susceptible to a wide range of antimicrobial agents in vitro, up to now the susceptibility of individual Borrelia species to antibiotics is defined only partially. [Projekat Ministarstva nauke Republike Srbije, br. 175011

  2. Isolation of cultivable microorganisms from Polish notes and coins.

    Science.gov (United States)

    Kalita, Michal; Palusińska-Szysz, Marta; Turska-Szewczuk, Anna; Wdowiak-Wróbel, Sylwia; Urbanik-Sypniewska, Teresa

    2013-01-01

    The potential role of currency in the spread of pathogenic microflora has been evaluated in many countries. In this study Polish paper notes and the coins in general circulation were assayed for the presence of cultivable bacteria and fungi. Bacterial isolates identification was based on cultural and biochemical characters and by comparison of the 16S rRNA gene sequence. Fungal isolates were recognized with biochemical and morphological criteria. Coagulase-negative staphylococci, (43.6% of the total bacterial count) including Staphylococcus saprophyticus, S. epidermidis, and S. hominis, and Enteroccus spp. (30.8% of the total bacterial count), i.e. E.faecalis, E.faecium and E. durans, were the most numerous bacterial contamination. Penicillium spp., and Aspergillus spp. were the most frequently detected moulds whereas Candida spp. was the most frequent yeast isolated from currency. A visible dependence between the banknote denomination, the physical condition of paper currency, and the number of bacteria and fungi was found. The overall count of bacteria isolated from currency was thousand-fold higher than that of fungal isolates. The total amount of bacteria and fungi recovered from the coins was approximately 2.7-fold lower than that isolated from the notes. In summary, the Polish currency notes were found to be contaminated mainly with commensal bacteria and fungi while the opportunistic pathogenic microorganisms Escherichia coli, Pseudomonas stutzeri and C. albicans were detected at a low frequency. PMID:24459833

  3. Specificity of the mutualistic association between actinomycete bacteria and two sympatric species of Acromyrmex leaf-cutting ants

    DEFF Research Database (Denmark)

    Poulsen, M; Cafaro, M; Boomsma, J J;

    2005-01-01

    Acromyrmex leaf-cutting ants maintain two highly specialized, vertically transmitted mutualistic ectosymbionts: basidiomycete fungi that are cultivated for food in underground gardens and actinomycete Pseudonocardia bacteria that are reared on the cuticle to produce antibiotics that suppress...

  4. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    KAUST Repository

    Olsen, Jeanine L.

    2016-01-27

    Seagrasses colonized the sea1 on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet2. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes3, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae4 and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming5, 6, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants7.

  5. The Existing Condition of Mangrove Region of Avicenia marina, Its: Distribution and Functional Transformation

    Directory of Open Access Journals (Sweden)

    Ahmad Herison

    2014-04-01

    Full Text Available Mangrove ecosystem existence is important for environment and other organisms because of its ecological and economical values, so that management and preservation of mangrove ecosystem are needed. The purpose of this research was to determine the existing condition of mangrove, both its distribution and its functional transformation in Indah Kapuk Coastal Area. Avicennia marina becomes important as wave attenuation, a form of abrasion antidote. Transect-Square and Spot-Check methods were used to determine the existing condition of A.marina mangrove forests. Autocad program, coordinate converter, Google Earth, Google Map, and Arc View were applied in process of making mangrove distribution map. In western of research location exactly at Station 1 and Station 2, the density value of mangrove was 450 and 825 tree ha-1, respectively with sparse category because they were contaminated by waste and litter. In eastern of research location namely Station 3, Station 4, and Station 5 the mangroves grow well with density value of 650 (sparse, 1,500 (very dense, and 1,200 tree ha-1 (fair, respectively, eventhough the contamination still happened. The mangrove forests around the stations do not function as wave attenuation because there were many waterfront constructions which have replaced the function of mangrove forests to damp the wave. In short, it can be stated that the mangrove's function has changed in a case of wave attenuation. The function of mangrove forests is not determined by mangrove forest density but it is determined by mangrove's free position.

  6. Microplastics are taken up by mussels (Mytilus edulis) and lugworms (Arenicola marina) living in natural habitats

    International Nuclear Information System (INIS)

    We studied the uptake of microplastics under field conditions. At six locations along the French–Belgian–Dutch coastline we collected two species of marine invertebrates representing different feeding strategies: the blue mussel Mytilus edulis (filter feeder) and the lugworm Arenicola marina (deposit feeder). Additional laboratory experiments were performed to assess possible (adverse) effects of ingestion and translocation of microplastics on the energy metabolism (cellular energy allocation) of these species. Microplastics were present in all organisms collected in the field: on average 0.2 ± 0.3 microplastics g−1 (M. edulis) and 1.2 ± 2.8 particles g−1 (A. marina). In a proof of principle laboratory experiment, mussels and lugworms exposed to high concentrations of polystyrene microspheres (110 particles mL−1 seawater and 110 particles g−1 sediment, respectively) showed no significant adverse effect on the organisms' overall energy budget. The results are discussed in the context of possible risks as a result of the possible transfer of adsorbed contaminants. - Highlights: • Microplastics were detected in mussels and lugworms living in natural conditions. • Effects on energy metabolism were assessed in a proof of principle experiment. • Exposure to high concentrations did not result in significant effects

  7. Microplastics are taken up by mussels (Mytilus edulis) and lugworms (Arenicola marina) living in natural habitats.

    Science.gov (United States)

    Van Cauwenberghe, Lisbeth; Claessens, Michiel; Vandegehuchte, Michiel B; Janssen, Colin R

    2015-04-01

    We studied the uptake of microplastics under field conditions. At six locations along the French-Belgian-Dutch coastline we collected two species of marine invertebrates representing different feeding strategies: the blue mussel Mytilus edulis (filter feeder) and the lugworm Arenicola marina (deposit feeder). Additional laboratory experiments were performed to assess possible (adverse) effects of ingestion and translocation of microplastics on the energy metabolism (cellular energy allocation) of these species. Microplastics were present in all organisms collected in the field: on average 0.2 ± 0.3 microplastics g(-1) (M. edulis) and 1.2 ± 2.8 particles g(-1) (A. marina). In a proof of principle laboratory experiment, mussels and lugworms exposed to high concentrations of polystyrene microspheres (110 particles mL(-1) seawater and 110 particles g(-1) sediment, respectively) showed no significant adverse effect on the organisms' overall energy budget. The results are discussed in the context of possible risks as a result of the possible transfer of adsorbed contaminants. PMID:25617854

  8. Nutrient Dynamics in an Avicennia marina (Forsk. Vierh., Mangrove Forest in Vamleshwar, Gujarat, India

    Directory of Open Access Journals (Sweden)

    Isaiah Nirmal KUMAR

    2011-03-01

    Full Text Available The study was carried out to determine the nutrient budget of plants, sediments and nutrient dynamics in an Avicennia marina (Forsk. Vierh., dominated forest in Vamleshwar near Narmada estuary, West Coast of Gujarat for a period of one year from November 2008 to October 2009. The average tree height of the mangrove is 1.5 to 2 m without much vertical stratification. Allometric methodology was used to measure the biomass, and yield a figure of 86.47 t ha-1 and the litter fall rate amounted to 2.9 t ha-1. Nutrient stocks of N, P and K in this mangrove were 137.05, 14.38 and 241.29 kg ha-1, with an annual accumulation of 55.74, 12.38 and 83.94 kg ha-1, and an annual return of 51.30, 10.83 and 13.52 kg ha-1, respectively, in the form of litter. The annual uptake for N, P and K were 61.04, 14.28 and 97.46 kg ha-1, and turnover rates of N, P and K were estimated at 3, 6 and 14 years, respectively, for the study period. Flow coefficients, which reveal the dynamic processes of nutrients between mangrove plants and sediments, are also explained. The present study concluded that the A. marina dominated mangrove plantation is more efficient in nutrient use and conservation.

  9. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

    Energy Technology Data Exchange (ETDEWEB)

    Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Lu, Megan [Los Alamos National Laboratory (LANL); Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Copeland, A [U.S. Department of Energy, Joint Genome Institute; Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Brambilla, Evelyne-Marie [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Potter, Gabriele [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Rohde, Manfred [HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany; Goker, Markus [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Li, Wen-Jun [Yunnan University, Kunming, China; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute

    2012-01-01

    Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

  10. Radiocarbon isotopic evidence for assimilation of atmospheric CO2 by the seagrass Zostera marina

    Directory of Open Access Journals (Sweden)

    K. Watanabe

    2015-05-01

    Full Text Available Submerged aquatic vegetation assimilates dissolved inorganic carbon (DIC in the water column as a carbon source across its thin cuticle layer. However, it is expected that marine macrophytes also use atmospheric CO2 when exposed to the air during low tide, although assimilation of atmospheric CO2 has never been quantitatively evaluated. Using the radiocarbon isotopic signatures (Δ14C of the seagrass Zostera marina and DIC, we show quantitatively that Z. marina takes up and assimilates atmospheric modern CO2 in a shallow coastal ecosystem. The Δ14C values of the seagrass (−36 to −8‰ were significantly higher than those of aquatic DIC (−45 to −18‰, indicating that the seagrass uses a 14C-rich carbon source (atmospheric CO2, +17‰. A carbon-source mixing model indicated that the seagrass assimilated ~ 46% (mean: 22% of its inorganic carbon as atmospheric CO2. CO2 exchange between the air and the seagrass may be enhanced by the presence of a very thin water film over the air-exposed leaves during low tide. Our radiocarbon isotope analysis, showing assimilation of atmospheric modern CO2 as an inorganic carbon source, offers better understanding of the role of seagrass meadows in coastal carbon dynamics.

  11. Bohemia as the Homeland of the Soul in the Letters of Marina Tsvetaeva to Anna Teskova

    Directory of Open Access Journals (Sweden)

    Massimo Tria

    2014-03-01

    Full Text Available The article examines the letters sent by Marina Tsvetaeva to the translator and public figure Anna Teskova, who was one of the few poet’s Czech intimate friends, whom she met during her stay in Czechoslovakia (1922-1925. In the first part of the paper the Author focuses on the echoes of Prague and its culture in this specific correspondence, trying to ascertain to which extent Marina Tsvetaeva was acquainted with the cultural world she lived in: the lack of knowledge of the Czech language and the limited relationships with Prague intellectuals didn’t allow her to get a deep insight of the Czech cultural milieu. The textual analysis of the letters, though, on the basis of key concepts as “родной”, “родина”, “честь”, confirms the presence of a persistent feeling of Prague-homesickness in Tsvetaeva’s psycho- logical world, which brought her to develop an alternative model of Homeland, substitute to her native Russia and to Germany, which disappointed her after the rise of the Nazi Regime. Through this unique correspondence (including the first part of her Verses dedicated to Bohemia we gain the certainty that Tsvetaeva discovered in Prague and in the Czech lands an idealized model of a pacific, beautiful and faithful Homeland.

  12. Effects of salinity and water temperature on the ecological performance of Zostera marina

    DEFF Research Database (Denmark)

    Nejrup, Lars Brammer; Pedersen, Morten Foldager

    2008-01-01

    We tested the effects of salinity and water temperature on the ecological performance of eelgrass (Zostera marina L.) in culture-experiments to identify levels that could potentially limit survival and growth and, thus, the spatial distribution of eelgrass in temperate estuaries. The experiments ...... for eelgrass appeared to lie between 10 and 20 8C. These results show that extreme conditions may affect the fitness of eelgrass and, thus, may potentially limit its distribution in coastal and estuarine waters.......We tested the effects of salinity and water temperature on the ecological performance of eelgrass (Zostera marina L.) in culture-experiments to identify levels that could potentially limit survival and growth and, thus, the spatial distribution of eelgrass in temperate estuaries. The experiments...... included eight levels of salinity (2.5, 5, 10, 15, 20, 25, 30 and 35%) and seven water temperatures (5, 10, 15, 20, 25, 27.5 and 30 8C). Low salinity (i.e. 5 and 2.5%) increased mortality (3-6-fold) and had a strong negative effect on shoot morphology (number of leaves per shoot reduced by 40% and shoot...

  13. Rhizodegradation potential and tolerance of Avicennia marina (Forsk.) Vierh in phenanthrene and pyrene contaminated sediments.

    Science.gov (United States)

    Jia, Hui; Wang, He; Lu, Haoliang; Jiang, Shan; Dai, Minyue; Liu, Jingchun; Yan, Chongling

    2016-09-15

    A pot experiment was conducted to investigate the dissipation of phenanthrene and pyrene in spiked sediments with presence of Avicennia marina (Forsk.) Vierh. The rhizosphere environment was set up using a self-design nylon rhizo-bag which divided the sediment into the rhizosphere and non-rhizosphere. Results showed that the dissipation of phenanthrene and pyrene were significantly enhanced in the rhizosphere compared with non-rhizosphere sediments. Plant roots promoted dissipation significantly greater than the contribution of direct plant uptake and accumulation of phenanthrene and pyrene. The activities of antioxidant and detoxification enzymes in roots and leaves significantly increased against oxidative stress with increasing PAH concentrations. Furthermore, a significant relationship (R(2)>0.91) between dissolved organic carbon (DOC) concentrations and the residual of PAHs in rhizosphere and non-rhizosphere sediments was observed after 120days planting. Results indicated that rhizome mediation with A. marina is a useful approach to promote the depletion of PAHs in contaminated mangrove sediments. PMID:27373941

  14. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

    Science.gov (United States)

    Olsen, Jeanine L; Rouzé, Pierre; Verhelst, Bram; Lin, Yao-Cheng; Bayer, Till; Collen, Jonas; Dattolo, Emanuela; De Paoli, Emanuele; Dittami, Simon; Maumus, Florian; Michel, Gurvan; Kersting, Anna; Lauritano, Chiara; Lohaus, Rolf; Töpel, Mats; Tonon, Thierry; Vanneste, Kevin; Amirebrahimi, Mojgan; Brakel, Janina; Boström, Christoffer; Chovatia, Mansi; Grimwood, Jane; Jenkins, Jerry W; Jueterbock, Alexander; Mraz, Amy; Stam, Wytze T; Tice, Hope; Bornberg-Bauer, Erich; Green, Pamela J; Pearson, Gareth A; Procaccini, Gabriele; Duarte, Carlos M; Schmutz, Jeremy; Reusch, Thorsten B H; Van de Peer, Yves

    2016-02-18

    Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants. PMID:26814964

  15. Radiocarbon isotopic evidence for assimilation of atmospheric CO2 by the seagrass Zostera marina

    Science.gov (United States)

    Watanabe, K.; Kuwae, T.

    2015-10-01

    Submerged aquatic vegetation takes up water-column dissolved inorganic carbon (DIC) as a carbon source across its thin cuticle layer. It is expected that marine macrophytes also use atmospheric CO2 when exposed to air during low tide, although assimilation of atmospheric CO2 has never been quantitatively evaluated. Using the radiocarbon isotopic signatures (Δ14C) of the seagrass Zostera marina, DIC and particulate organic carbon (POC), we show quantitatively that Z. marina takes up and assimilates atmospheric modern CO2 in a shallow coastal ecosystem. The Δ14C values of the seagrass (-40 to -10 ‰) were significantly higher than those of aquatic DIC (-46 to -18 ‰), indicating that the seagrass uses a 14C-rich carbon source (atmospheric CO2, +17 ‰). A carbon-source mixing model indicated that the seagrass assimilated 0-40 % (mean, 17 %) of its inorganic carbon as atmospheric CO2. CO2 exchange between the air and the seagrass might be enhanced by the presence of a very thin film of water over the air-exposed leaves during low tide. Our radiocarbon isotope analysis, showing assimilation of atmospheric modern CO2 as an inorganic carbon source, improves our understanding of the role of seagrass meadows in coastal carbon dynamics.

  16. Identification and subcellular localization of starch-metabolizing enzymes in the green alga Dunaliella marina.

    Science.gov (United States)

    Kombrink, E; Wöber, G

    1980-07-01

    Enzymes of starch synthesis and degradation were identified in crude extracts of the unicellular green alga Dunaliella marina (Volvocales). By polyacrylamide gel electrophoresis and specific staining for enzyme activities, 4 multiple forms of starch synthase, 2 amylases, and at least 2 forms of α-glucan phosphorylase were visible. Using specific α-glucans incorporated into the gel before electrophoresis we have tentatively correlated α-amylase and β-amylase with both hydrolytic activities. The activities of α-glucan phosphorylase and amylase(s) were measured quantitatively in crude extracts, and the concomitant action of α-glucan phosphorylase and amylase(s) was found to account for the fastest rate of starch mobilization observed in vivo. Isolated chloroplasts retained both typical plastid marker enzymes and ADPglucose pyrophosphorylase, starch synthase, amylase(s), and α-glucan phosphorylase to a similar percentage. Gel electrophoretic analysis followed by staining for enzyme activity of a stromal fraction resulted in a pattern of multiple forms of starch-metabolizing enzymes analogous to that found in a crude extract. We interpret the combined data as indicating the exclusive location in vivo of starch-metabolizing enzymes in chloroplasts of D. marina. PMID:24306243

  17. Efecto de la asociación alga-bacteria Bostrychia calliptera (Rhodomelaceae) en el porcentaje de remoción de cromo en laboratorio

    OpenAIRE

    Ana Lucía Rengifo-Gallego; Enrique Peña-Salamanca; Neyla Benitez-Campo

    2012-01-01

    Para determinar el porcentaje de remoción de cromo en la asociación alga-bacteria, se tomaron ejemplares del alga Bostrychia calliptera de pneumatóforos de Avicennia germinans y Rizophora mangle, en la desembocadura del Río Dagua, Pacífico colombiano. El ensayo se realizó in vitro en agua marina sintética a dos concentraciones de cromo 5 y 10mg/L, empleando biorreactores con cuatro tratamientos; i) material Alga-Bacteria (AB), ii) material algal con antibiótico Alga-antibiótico (AA), iii) con...

  18. Graphene oxide-dependent growth and self-aggregation into a hydrogel complex of exoelectrogenic bacteria

    OpenAIRE

    Naoko Yoshida; Yasushi Miyata; Kasumi Doi; Yuko Goto; Yuji Nagao; Ryugo Tero; Akira Hiraishi

    2016-01-01

    Graphene oxide (GO) is reduced by certain exoelectrogenic bacteria, but its effects on bacterial growth and metabolism are a controversial issue. This study aimed to determine whether GO functions as the terminal electron acceptor to allow specific growth of and electricity production by exoelectrogenic bacteria. Cultivation of environmental samples with GO and acetate as the sole substrate could specifically enrich exoelectrogenic bacteria with Geobacter species predominating (51–68% of the ...

  19. Mass Cultivation of Freshwater Microalgae

    Czech Academy of Sciences Publication Activity Database

    Masojídek, Jiří; Torzillo, G.

    2014-01-01

    Roč. 2, č. 2 (2014), s. 1-13. ISSN 0000-0000 R&D Projects: GA MŠk ED2.1.00/03.0110; GA MŠk EE2.3.30.0059 Institutional support: RVO:61388971 Keywords : microalgae * mass cultivation * bio-active compounds Subject RIV: EE - Microbiology, Virology

  20. Cultivating Spiritual Reflectivity in Teachers.

    Science.gov (United States)

    Mayes, Clifford

    2001-01-01

    Discusses the need to address spiritual beliefs in teacher education, arguing that: because spiritual impulses are so primary for many people, they must be addressed in teacher education; educators must recognize and cultivate students' spiritual motivations to teach and foster reflectivity; and student teachers must learn what they can legally…

  1. Mushroom Cultivation in South Korea

    Directory of Open Access Journals (Sweden)

    Mustafa Kemal Soylu

    2016-03-01

    Full Text Available Mushroom cultivation in South Korea is increasing fast last decades. Mushroom cultivation of South Korea is 173577 tones and South Korea gains 800 million dollars income annually. Different kind of mushroom species are cultivated and 31% enoki mushroom (Flammulina velutipes, 26% king oyster (Pleurotus eryngii, 26% oyster mushroom (Pleurotus ostreatus, 13% white buton mushroom (Agaricus bisporus and 4% rest of the total mushroom Lentinula edodes, Ganoderma lucidum, Phellinus vb. are produced in Korea. 764 ha mushroom growing area was used for mushroom cultivation. 31% of total growing area is oyster mushroom (Pleurotus ostreatus and 14% king oyster (Pleurotus eryngii, 6% winter mushroom (Flummulina velutipes, 16% white button mushroom (Agaricus bisporus, 3% Phellinus, 3% reishii (Ganoderma lucidum and 27% other mushrooms. Mushroom is consumed frequently in Korea and mushroom consumption per person is 4.2 kg. Growing on log culture (oak mushroom, reishi and Phellinus, growing on shelves (Agaricus bisporus and Pleurotus ostreatus and bottle culture (Flummulina velutipes, Pleurotus ostreatus, Pleurotus eryngii are commonly used growing systems.

  2. Cultivating archives: meanings and identities

    NARCIS (Netherlands)

    E. Ketelaar

    2012-01-01

    By cultivating archives through successive activations, people and communities define their identities. In these activations, the meanings of archives are constructed and reconstructed. Archives are not a static artifact imbued with the record creator’s voice alone, but a dynamic process involving a

  3. DMTB: the magnetotactic bacteria database

    Science.gov (United States)

    Pan, Y.; Lin, W.

    2012-12-01

    Magnetotactic bacteria (MTB) are of interest in biogeomagnetism, rock magnetism, microbiology, biomineralization, and advanced magnetic materials because of their ability to synthesize highly ordered intracellular nano-sized magnetic minerals, magnetite or greigite. Great strides for MTB studies have been made in the past few decades. More than 600 articles concerning MTB have been published. These rapidly growing data are stimulating cross disciplinary studies in such field as biogeomagnetism. We have compiled the first online database for MTB, i.e., Database of Magnestotactic Bacteria (DMTB, http://database.biomnsl.com). It contains useful information of 16S rRNA gene sequences, oligonucleotides, and magnetic properties of MTB, and corresponding ecological metadata of sampling sites. The 16S rRNA gene sequences are collected from the GenBank database, while all other data are collected from the scientific literature. Rock magnetic properties for both uncultivated and cultivated MTB species are also included. In the DMTB database, data are accessible through four main interfaces: Site Sort, Phylo Sort, Oligonucleotides, and Magnetic Properties. References in each entry serve as links to specific pages within public databases. The online comprehensive DMTB will provide a very useful data resource for researchers from various disciplines, e.g., microbiology, rock magnetism and paleomagnetism, biogeomagnetism, magnetic material sciences and others.

  4. Sæsontilpasninger i stofsikftet reducerer lyskravet hos ålegræs (Zostera marina)

    DEFF Research Database (Denmark)

    Stæhr, Peter A.; Borum, Jens

    Sæsontilpasning i stofskiftet reducerer lyskravet hos Ålegræs (Zostera marina) Peter A. Stæhr1 og Jens Borum2 1 Danmarks Miljøundersøgelser, Afdeling for Marin Økologi, Aarhus Universit, Frederiksborgvej 399, PO Box 358, 4000 Roskilde, Email: pst@dmu.dk 2 Ferskvandsbiologisk Laboratorium, biologisk...

  5. Effects of coexistence between the blue mussel Mytilus edulis and eelgrass Zostera marina on sediment biogeochemistry and plant performance

    DEFF Research Database (Denmark)

    Vinther, H.F.; Norling, P.; Kristensen, Per Sand;

    2012-01-01

    The habitat-modifying suspension-feeding mussel, Mytilus edulis, may have facilitating or inhibiting effects on seagrass meadows depending on the environmental conditions. We investigated the effects of M. edulis on sediment biogeochemistry in Zostera marina meadows under eutrophic conditions in...

  6. Economic Models of Shifting Cultivation: A Review

    OpenAIRE

    Takasaki, Yoshito

    2012-01-01

    This chapter reviews farm-level economic models of shifting cultivation and those of deforestation and soil conservation related to shifting cultivation. Although economists have made significant progress in modeling shifting cultivation over the last two decades, extant economic models neither clearly distinguish between primary and secondary forests nor address potential roles of on-farm soil conservation in shifting cultivation. Developing a unified farm model of primary forest clearing, f...

  7. Bacteria isolated from amoebae/bacteria consortium

    Science.gov (United States)

    Tyndall, Richard L.

    1995-01-01

    New protozoan derived microbial consortia and method for their isolation are provided. Consortia and bacteria isolated therefrom are useful for treating wastes such as trichloroethylene and trinitrotoluene. Consortia, bacteria isolated therefrom, and dispersants isolated therefrom are useful for dispersing hydrocarbons such as oil, creosote, wax, and grease.

  8. On the Cultivation of Intensive Reading Skills

    Institute of Scientific and Technical Information of China (English)

    杨雪琴

    2008-01-01

    This paper concerns the importance of the cultivation of reading skills,the characteristics of intensive reading and how to cultivate the intensive reading skills.Since the focus of this papre is how to cultivate the intensive reading skills,we make a systematic exposition from three points: word study,grammar patterns and text.

  9. Heterotrophic bacteria associated with Varroa destructor mite

    OpenAIRE

    Vanikova, Slavomira; Noskova, Alzbeta; Pristas, Peter; Judova, Jana; Javorsky, Peter

    2015-01-01

    International audience Varroa bee hive attack is a serious and common problem in bee keeping. In our work, an ecto-microflora of Varroa destructor mites was characterised as a potential source of bacterial bee diseases. Using a cultivation approach, a variable population of bacteria was isolated from the body surface of Varroa mites with frequency of about 150 cfu per mite individual. Nine studied isolates were classified to four genera and six species by a combination of matrix-assisted l...

  10. Efecto de la asociación alga-bacteria Bostrychia calliptera (Rhodomelaceae) en el porcentaje de remoción de cromo en laboratorio The effect of chromium removal by Algae-bacteria Bostrychia calliptera (Rhodomelaceae) consortia under laboratory conditions

    OpenAIRE

    Ana Lucía Rengifo-Gallego; Enrique Peña-Salamanca; Neyla Benitez-Campo

    2012-01-01

    Para determinar el porcentaje de remoción de cromo en la asociación alga-bacteria, se tomaron ejemplares del alga Bostrychia calliptera de pneumatóforos de Avicennia germinans y Rizophora mangle, en la desembocadura del Río Dagua, Pacífico colombiano. El ensayo se realizó in vitro en agua marina sintética a dos concentraciones de cromo 5 y 10mg/L, empleando biorreactores con cuatro tratamientos; i) material Alga-Bacteria (AB), ii) material algal con antibiótico Alga-antibiótico (AA), iii) con...

  11. Bleach vs. Bacteria

    Science.gov (United States)

    ... Articles | Inside Life Science Home Page Bleach vs. Bacteria By Sharon Reynolds Posted April 2, 2014 Your ... hypochlorous acid to help kill invading microbes, including bacteria. Researchers funded by the National Institutes of Health ...

  12. Ammonia effect on hydrogenotrophic methanogens and syntrophic acetate oxidizing bacteria

    DEFF Research Database (Denmark)

    Wang, Han; Fotidis, Ioannis; Angelidaki, Irini

    2015-01-01

    Ammonia-rich substrates can cause inhibition on anaerobic digestion process. Syntrophic acetate oxidizing bacteria (SAOB) and hydrogenotrophic methanogens are important for the ammonia inhibitory mechanism on anaerobic digestion. The roles and interactions of SAOB and hydrogenotrophic methanogens...... to ammonia inhibition effect are still unclear. The aim of the current study was to determine the ammonia toxicity levels of various pure strains of SAOB and hydrogenotrophic methanogens. Moreover, ammonia toxicity on the syntrophic cultivated strains of SAOB and hydrogenotrophic methanogens was...... tested. Thus, four hydrogenotrophic methanogens (i.e. Methanoculleus bourgensis, Methanobacterium congolense, Methanoculleus thermophilus and Methanothermobacter thermautotrophicus), two SAOB (i.e. Tepidanaerobacter acetatoxydans and Thermacetogenium phaeum) and their syntrophic cultivation, were...

  13. Bacteria and lignin degradation

    Institute of Scientific and Technical Information of China (English)

    Jing LI; Hongli YUAN; Jinshui YANG

    2009-01-01

    Lignin is both the most abundant aromatic (phenolic) polymer and the second most abundant raw material.It is degraded and modified by bacteria in the natural world,and bacteria seem to play a leading role in decomposing lignin in aquatic ecosystems.Lignin-degrading bacteria approach the polymer by mechanisms such as tunneling,erosion,and cavitation.With the advantages of immense environmental adaptability and biochemical versatility,bacteria deserve to be studied for their ligninolytic potential.

  14. Body Cultivation in Contemporary China

    OpenAIRE

    Palmer, DA

    2006-01-01

    Body cultivation practices known as qigong1 were the most widespread form of popular religiosity in post-Mao urban China between 1979 and 19992. It is estimated that at the height of “qigong fever” in the middle of this period, over 100 million people -- over 20% of the urban population -- practiced the gymnastic, breathing and meditative exercises of qigong in some form or another. Hundreds of charismatic qigong healers and masters rose to fame and built organisations which, i...

  15. Phylogenetic diversity and phenotypic characterization of cultivable bacterioplankton isolated from polar oceans

    Institute of Scientific and Technical Information of China (English)

    ZENG Yinxin; LI Huirong; YU Yong; CHEN Bo; ZHENG Tianling

    2007-01-01

    A set of 27 marine planktonic bacteria isolated from the polar regions was characterized by 16S rDNA sequencing and physiological and biochemical testing. More than half of these bacteria were positive for caseinase, gelatinase and β-glucosidase, and could utilize glucose, maltose or malic acid as carbon source for cell growth. Twelve isolates expressed nitrate reduction activities. Except for one antarctic isolate BSw10175 belonging to Actinobacteria phylum, these isolates were classified as γ-Proteobacteria, suggesting that γ-Proteobacteria dominated in cultivable marine bacterioplankton at both poles. Genus Pseudoalteromonas was the predominant group in the Chukchi Sea and the Bering Sea, and genus Shewanella dominated in cultivable bacterioplankton in the Prydz Bay. With sequence similarities above 97%, genus Psychrobacter was found at both poles. These 27 isolates were psychrotolerant, and significant 16S rDNA sequence similarities were found not only between arctic and antarctic marine bacteria ( > 99% ),but also between polar marine bacteria and bacteria from other aquatic environments ( ≥98.8% ) , including temperate ocean,deep sea, pond and lake, suggesting that in the polar oceans less temperature-sensitive bacteria may be cosmopolitan and have a bipolar, even global, distribution at the species level.

  16. Marina buildings

    OpenAIRE

    Addison, Mike

    2009-01-01

    The print is in response to an ongoing thematic enquiry into structures and facades including of industrial , rail and maritime heritage etc., with reference to associated surface and graphic qualities. It is an example of an ongoing exploration of colour, light, surface and motif within selected aspects of architecture, structure and facade. Constructed using vector software, it combines printmaking techniques and the technology of inkjet printing using pigment inks and archival substrates. ...

  17. An introduced pentastomid parasite (Raillietiella frenata) infects native cane toads (Rhinella marina) in Panama.

    Science.gov (United States)

    Kelehear, Crystal; Saltonstall, Kristin; Torchin, Mark E

    2015-04-01

    The pentastomid parasite, Raillietiella frenata, is native to Asia where it infects the Asian House gecko, Hemidactylus frenatus. This gecko has been widely introduced and recently R. frenata was found in introduced populations of cane toads (Rhinella marina) in Australia, indicating a host-switch from introduced geckos to toads. Here we report non-native adult R. frenata infecting the lungs of native cane toads in Panama. Eight of 64 toads were infected (median = 2.5, range = 1-80 pentastomids/toad) and pentastomid prevalence was positively associated with the number of buildings at a site, though further sampling is needed to confirm this pattern. We postulate that this pattern is likely due to a host shift of this parasite from an urban-associated introduced gecko. This is the first record of this parasite infecting cane toads in their native range, and the first instance of this parasite occurring in Central America. PMID:25394910

  18. Sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China

    Science.gov (United States)

    Li, Ruili; Chai, Minwei; Guo, Meixian; Qiu, Guo Yu

    2016-08-01

    To investigate the rate of sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China, sediment cores were analyzed. The results showed that Hg concentrations were much higher at all depths compared to the background level. A high correlation between Hg and total organic carbon (TOC) indicated their similar anthropogenic origin. Sedimentation rate was estimated to be 1.38 cm a-1 by 210Pb geochronology. The increase in the mass sediment accumulation rates was rapid (range: 0.5-0.94 g cm-2 a-1), and the Hg fluxes ranged between 76 and 116 ng cm-2 a-1 during the last three decades. The reduction in both Hg concentrations and flux during the last decade may be due to the adoption of contamination control policies. Our results support the notion that the Hg fluxes determined from the sediment cores reveal the effects of anthropogenic influences from the areas around Deep Bay.

  19. Radioactivity in north European waters: report of Working Group 2 of CEC project MARINA

    International Nuclear Information System (INIS)

    The primary objective of Working Group 2 of Project MARINA was to consider recent measurements of environmental radioactivity in north European waters and to use this, and other information, to report likely magnitude of doses to the critical group from marine pathways. The monitoring data were supplemented, where appropriate, with predictions from simple models. The major sources of radioactivity studied were as follows: (i) liquid wastes from nuclear fuel reprocessing plants, (Sellafield, Dounreay, Cap de la Hague); (ii) liquid wastes from nuclear power plants and other major nuclear industry sites, (including Belgium, Denmark, France, Finland, GDR, FDR, Netherlands, Sweden, UK, USSR); (iii) solid waste disposal in the deep north-east Atlantic; (iv) fallout from Chernobyl; and (v) naturally-occurring radionuclides. (author)

  20. Photosynthetic carbon fixation pathways in Zostera marina and three Florida seagrasses

    Energy Technology Data Exchange (ETDEWEB)

    Beer, S.; Wetzel, R.G.

    1982-06-01

    The photosynthetic carbon fixation pathways of four seagrass species, Zostera marina L. from Alaska and Thalassia testudinum Banks ex Konig, Syringodium filiforme Kutz. and Halodule wrightii Aschers. from the Gulf of Mexico, were investigated with a /sup 14/C pulse-chase technique. All species were found to be principally of the C/sub 3/ type. However, Thalassia and Halodule had higher initial incorporation rates into organic acids than is typical for terrestrial C/sub 3/ plants. Of 11 seagrass species investigated thus far for C/sub 3/ or C/sub 4/ metabolism using this technique, 10 were found to be principally of the C/sub 3/ type while only one exhibited C/sub 4/ metabolism.

  1. Distribution and characteristics of marine litter on the Marina beach, Chennai, India

    Science.gov (United States)

    Dhanapal, R.

    2013-05-01

    The types, quantities, and distribution of marine litter found on the beach of the Marina, Chennai, India were surveyed during 2010-2011 season wise. Litter items were sorted into material and usage categories. The counts and weights of the litter were counted and measured. The plastic-type litter (63.4 kg) is the most dominant material category followed by polythene (10.6 kg), metal (5.3 kg) and glass (15.2 kg). Cloth (66.0 kg) is the dominant usage category followed by rubber (45.7 kg) and wood (70.0 kg). Based on the typological results three dominant litter sources were identified viz., land-based, vessel-based and fishery-based sources. t test help recognize dominant litter sources.t; t;

  2. La arquitectura de los despoblados moriscos en los valles de la Marina Alta.

    OpenAIRE

    SOLER ESTRELA, ALBA

    2009-01-01

    La tesis realiza el estudio arquitectónico de los núcleos de población de origen islámico y mudéjar, que quedaron abandonados tras la expulsión de los moriscos, en el ámbito geográfico de los Valles de la Marina Alta (Alicante). El método desarrollado se inscribe en la línea de los estudios e investigaciones relacionadas con el conocimiento para la conservación del patrimonio arquitectónico. A partir de una lectura arquitectónica basada en la observación directa de las edificaciones se realiz...

  3. Esteróles libres monohidroxilados de la esponja marina agelas schmidti (wilson, 1902)

    OpenAIRE

    Carmenza Duque; Germán Castillo; Sandra Buitrago; Oscar Osorno; Sven Zea

    2010-01-01

    De la esponja marina Ágelas schmidti recolectada en la bahía de Santa Marta (Caribe Colombiano), se aisló por cromatografía en columna sobre silica gel la fracción esterólica. Los esteróles presentes en esta fracción fueron sometidos a Cromatografía Líquida de Alta Eficiencia preparativa en fase reversa y analizados por Cromatografía de Gases de Alta Resolución y Cromatografía de Gases de Alta Resolución acoplada a Espectrometría de Masas. De dieciocho esteróles separados, diecisiete fu...

  4. Synergistic effects of altered salinity and temperature on estuarine eelgrass (Zostera marina) seedlings and clonal shoots

    DEFF Research Database (Denmark)

    Salo, Tiina Elina; Pedersen, Morten Foldager

    2014-01-01

    investigated experimentally how different combinations of salinity and temperature affect the physiological performance of adult eelgrass (Zostera marina) shoots and seedlings. Plants were exposed to different combinations of salinity (salinity 5, 12.5 and 20) and temperature (15, 20 and 25 °C) in a 5-week...... and temperature. Seedlings had higher absolute mortality, while adult shoots were relatively more sensitive to unfavorable levels of salinity. Leaf tissue sucrose concentrations in both life stages decreased at low salinity, whereas salinity and temperature resulted in contrasting starch...... concentrations between seedlings and adult shoots. Our results show that altered salinity and temperature may have negative synergistic effects on eelgrass performance. Future climate changes may thus have serious impacts on eelgrass survival and performance....

  5. Burial of Zostera marina seeds in sediment inhabited by three polychaetes: laboratory and field studies

    DEFF Research Database (Denmark)

    Delefosse, Matthieu; Kristensen, Erik

    2012-01-01

    The large number of seeds produced by eelgrass, Zostera marina, provides this plant with a potential to disperse widely and colonise newareas. After dispersal, seedsmust be buried into sediment for assuring long-term survival, successful germination and safe seedling development. Seedsmay be buried...... recovered, suggesting that physical dispersion by waves and currents was considerably important for horizontal distribution. However, polychaete affected significantly the vertical distribution of seeds.Overall the effects of these three polychaetes indicate that benthicmacroinvertebratesmay significantly...... impact eelgrass seed bank at the ecosystemscale. Some species have a positive effect by burying seeds to shallow depths and thereby reducing seed predation and facilitating seed germination, while other species bury seeds too deep for successful seed germination and seedling development....

  6. Eelgrass (Zostera marina) food web structure in different environmental settings

    DEFF Research Database (Denmark)

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne;

    2016-01-01

    his study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in...... composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient......-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage...

  7. Supramolecular organization of phycobiliproteins in the chlorophyll d-containing cyanobacterium Acaryochloris marina.

    Science.gov (United States)

    Chen, Min; Floetenmeyer, Matthias; Bibby, Thomas S

    2009-08-01

    Here we report the high-resolution detail of the organization of phycobiliprotein structures associated with photosynthetic membranes of the chlorophyll d-containing cyanobacterium Acaryochloris marina. Cryo-electron transmission-microscopy on native cell sections show extensive patches of near-crystalline phycobiliprotein rods that are associated with the stromal side of photosynthetic membranes. This supramolecular photosynthetic structure represents a novel mechanism of organizing the photosynthetic light-harvesting machinery. In addition, the specific location of phycobiliprotein patches suggests a physical separation of photosystem I and photosystem II reaction centres. Based on this finding and the known photosystem's structure in Acaryochloris, we discuss possible membrane arrangements of photosynthetic membrane complexes in this species. PMID:19596002

  8. Kinetics of phyllosemiquinone oxidation in the Photosystem I reaction centre of Acaryochloris marina.

    Science.gov (United States)

    Santabarbara, Stefano; Bailleul, Benjamin; Redding, Kevin; Barber, James; Rappaport, Fabrice; Telfer, Alison

    2012-02-01

    Light-induced electron transfer reactions in the chlorophyll a/d-binding Photosystem I reaction centre of Acaryochloris marina were investigated in whole cells by pump-probe optical spectroscopy with a temporal resolution of ~5ns at room temperature. It is shown that phyllosemiquinone, the secondary electron transfer acceptor anion, is oxidised with bi-phasic kinetics characterised by lifetimes of 88±6ns and 345±10ns. These lifetimes, particularly the former, are significantly slower than those reported for chlorophyll a-binding Photosystem I, which typically range in the 5-30ns and 200-300ns intervals. The possible mechanism of electron transfer reactions in the chlorophyll a/d-binding Photosystem I and the slower oxidation kinetics of the secondary acceptors are discussed. PMID:22037394

  9. Rezension zu: Marina Caffiero (Hg.: Rubare le anime. Roma: Viella 2008

    Directory of Open Access Journals (Sweden)

    Rita Unfer Lukoschik

    2009-07-01

    Full Text Available In den Akten des päpstlichen Staatsarchivs und der römischen jüdischen Gemeinde finden sich zeitgenössische Zeugnisse für die im päpstlichen Rom vom 16. bis zum 19. Jahrhundert nicht seltene Zwangskonvertierung jüdischer Mädchen und Frauen zum Katholizismus. Eines der wertvollsten Dokumente dieser Konversionspraxis liegt nunmehr in einer kommentierten Neuedition vor: das Tagebuch der 1749 sich erfolgreich der versuchten Zwangskonvertierung widersetzenden 18-jährigen Anna del Monte. In ihrer Einleitung ordnet die Herausgeberin Marina Caffiero dieses außergewöhliche Einzelschicksal in die zeitgleich und parallel laufenden Assimilations- und Emanzipationsprozesse ein, die sich in der mit aufklärerischem Gedankengut ‚infizierten‘ jüdischen Oberschicht Roms im 18. Jahrhundert abzeichneten.

  10. Microbiota of radish plants, cultivated in closed and open ecological systems

    Science.gov (United States)

    Tirranen, L. S.

    It is common knowledge that microorganisms respond to environmental changes faster than other representatives of the living world. The major aim of this work was to examine and analyze the characteristics of the microbiota of radish culture, cultivated in the closed ecological system of human life-support Bios-3 and in an open system in different experiments. Microbial community of near-root, root zone and phyllosphere of radish were studied at the phases of seedlings, root formation, technical ripeness—by washing-off method—like microbiota of the substrate (expanded clay aggregate) and of the seeds of radish culture. Inoculation on appropriate media was made to count total quantity of anaerobic and aerobic bacteria, bacteria of coliform group, spore-forming, Proteus group, fluorescent, phytopathogenic bacteria, growing on Fermi medium, yeasts, microscopic fungi, Actinomyces. It was revealed that formation of the microbiota of radish plants depends on the age, plant cultivation technology and the specific conditions of the closed system. Composition of microbial conveyor-cultivated in phytotrons varied in quality and in quantity with plant growth phases—in the same manner as cultivation of even-aged soil and hydroponics monocultures which was determined by different qualitative and quantitative composition of root emissions in the course of plant vegetation. The higher plant component formed its own microbial complex different from that formed prior to closure. The microbial complex of vegetable polyculture is more diverse and stable than the monoculture of radish. We registered the changes in the species composition and microorganism quantity during plant cultivation in the closed system on a long-used solution. It was demonstrated that during the short-term (7 days) use of the nutrient solution in the experiments without system closing, the species composition of the microbiota of radish plants was more diverse in a multiple-aged vegetable polyculture (61

  11. Application of Hazard Analysis and Critical Control Points (HACCP) to the Cultivation Line of Mushroom and Other Cultivated Edible Fungi.

    Science.gov (United States)

    Pardo, José E; de Figueirêdo, Vinícius Reis; Alvarez-Ortí, Manuel; Zied, Diego C; Peñaranda, Jesús A; Dias, Eustáquio Souza; Pardo-Giménez, Arturo

    2013-09-01

    The Hazard analysis and critical control points (HACCP) is a preventive system which seeks to ensure food safety and security. It allows product protection and correction of errors, improves the costs derived from quality defects and reduces the final overcontrol. In this paper, the system is applied to the line of cultivation of mushrooms and other edible cultivated fungi. From all stages of the process, only the reception of covering materials (stage 1) and compost (stage 3), the pre-fruiting and induction (step 6) and the harvest (stage 7) have been considered as critical control point (CCP). The main hazards found were the presence of unauthorized phytosanitary products or above the permitted dose (stages 6 and 7), and the presence of pathogenic bacteria (stages 1 and 3) and/or heavy metals (stage 3). The implementation of this knowledge will allow the self-control of their productions based on the system HACCP to any plant dedicated to mushroom or other edible fungi cultivation. PMID:24426137

  12. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones.

    Science.gov (United States)

    Park, Sang Rul; Kim, Sangil; Kim, Young Kyun; Kang, Chang-Keun; Lee, Kun-Seop

    2016-01-01

    Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax) and minimum saturation irradiance (Ek) of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α) and maximum quantum yield (Fv/Fm) were higher in subtidal plants. The intertidal plants also had significantly greater Stern-Volmer non-photochemical quenching (NPQ) than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´) in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones. PMID:27227327

  13. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones.

    Directory of Open Access Journals (Sweden)

    Sang Rul Park

    Full Text Available Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax and minimum saturation irradiance (Ek of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α and maximum quantum yield (Fv/Fm were higher in subtidal plants. The intertidal plants also had significantly greater Stern-Volmer non-photochemical quenching (NPQ than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´ in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones.

  14. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones

    Science.gov (United States)

    Park, Sang Rul; Kim, Sangil; Kim, Young Kyun; Kang, Chang-Keun; Lee, Kun-Seop

    2016-01-01

    Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax) and minimum saturation irradiance (Ek) of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α) and maximum quantum yield (Fv/Fm) were higher in subtidal plants. The intertidal plants also had significantly greater Stern–Volmer non-photochemical quenching (NPQ) than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´) in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones. PMID:27227327

  15. Sport and Tourism: a potentially conflictual relationship. The case of Marinas in Tenerife

    Directory of Open Access Journals (Sweden)

    Manuel Eduardo González Ramallal

    2010-01-01

    Full Text Available El artículo se centra en los conflictos que pueden surgir en el ámbito del deporte y el turismo partiendo del estudio de un caso centrado en dos puertos deportivos de la isla de Tenerife (España. A través de una aproximación cualitativa, se analizó el discurso de los participantes en siete actividades deportivas marinas diferentes. Frente a la tradicional visión optimista en torno a la relación entre deporte y turismo, los resultados de la investigación muestran que pueden surgir conflictos si ésta no se gestiona adecuadamente. Los conflictos pueden darse a tres niveles. En primer lugar, a nivel de práctica deportiva, donde los problemas pueden surgir entre las diferentes actividades deportivas que se dan en torno a los puertos deportivos. En segundo lugar, entre los diferentes grupos sociales que usan los puertos deportivos. En tercer lugar, a nivel turístico, los conflictos pueden surgir entre el modelo de desarrollo turístico y el uso que se le da a las marinas como espacios deportivos. El artículo concluye enfatizando las cuestiones clave a considerar para gestionar adecuadamente la relación deporte y turismo, tales como las de la imagen de marca asociada tanto a los deportes como a los destinos turísticos, así como los grupos sociales que habitualmente practican un deporte o visitan un destino.

  16. Burial of Zostera marina seeds in sediment inhabited by three polychaetes: Laboratory and field studies

    Science.gov (United States)

    Delefosse, M.; Kristensen, E.

    2012-07-01

    The large number of seeds produced by eelgrass, Zostera marina, provides this plant with a potential to disperse widely and colonise new areas. After dispersal, seeds must be buried into sediment for assuring long-term survival, successful germination and safe seedling development. Seeds may be buried passively by sedimentation or actively through sediment reworking by benthic fauna. We evaluated the effect of three polychaetes on the burial rate and depth of eelgrass seeds. Burial was first measured in controlled laboratory experiments using different densities of Nereis (Hediste) diversicolor (400-3200 ind m- 2), Arenicola marina (20-80 ind m- 2), and the invasive Marenzelleria viridis (400-1600 ind m- 2). The obtained results were subsequently compared with burial rates of seed mimics in experimental field plots (1 m2) dominated by the respective polychaetes. High recovery of seeds in the laboratory (97-100%) suggested that none of these polychaetes species feed on eelgrass seeds. N. diversicolor transported seeds rapidly (animal abundance. Only 2% of seed mimics casted in the field plots were recovered, suggesting that physical dispersion by waves and currents was considerably important for horizontal distribution. However, polychaete affected significantly the vertical distribution of seeds. Overall the effects of these three polychaetes indicate that benthic macroinvertebrates may significantly impact eelgrass seed bank at the ecosystem scale. Some species have a positive effect by burying seeds to shallow depths and thereby reducing seed predation and facilitating seed germination, while other species bury seeds too deep for successful seed germination and seedling development.

  17. Phylogenetic Analysis of Bacteria Preserved in a Permafrost Ice Wedge for 25,000 Years▿†

    OpenAIRE

    Katayama, Taiki; Tanaka, Michiko; Moriizumi, Jun; Nakamura, Toshio; Brouchkov, Anatoli; Douglas, Thomas A.; Fukuda, Masami; Tomita, Fusao; Asano, Kozo

    2007-01-01

    Phylogenetic analysis of bacteria preserved within an ice wedge from the Fox permafrost tunnel was undertaken by cultivation and molecular techniques. The radiocarbon age of the ice wedge was determined. Our results suggest that the bacteria in the ice wedge adapted to the frozen conditions have survived for 25,000 years.

  18. 瑞典沿岸水域濒临消失的大叶藻(Zostera Marina,L.)%Vanishing Seagrass (Zostera marina, L.) in Swedish Coastal Waters

    Institute of Scientific and Technical Information of China (English)

    Susanne Baden; Martin Gullstr(o)m; Bengt Lundén; Leif Pihl; Rutger Rosenberg

    2003-01-01

    在瑞典斯卡格拉克海峡沿岸,大叶藻(Zostera marina)是一种生长在浅水软海底上的优势显花植物.大叶藻场是许多甲壳动物和鱼类,不管是洄游种或是稳定种的重要群落生境.在20世纪80年代期间,作为海岸带管理的基础,对瑞典西海岸有大叶藻生长的沿岸浅水区的资源进行了调查.在这次研究中我们再次考察了斯卡格拉克海峡200km沿岸的5个沿海地区中的2000hm2大叶藻场.资源调查的方法(水下测量镜)与80年代的一样,但通过使用全球定位系统(GPS)增加了绘图的精确度.这次研究的结果表明,在10~15年的时间里,大叶藻的区域延伸面积减少了58%,且地区变化很大.大叶藻的减少主要限于大叶藻场的浅水部分.本文探讨了原因和生态后果.

  19. Karl Lenz, Marina Adler: Geschlechterverhältnisse. Einführung in die sozialwissenschaftliche Geschlechterforschung Band 1. Weinheim u.a.: Juventa Verlag 2010. — Karl Lenz, Marina Adler: Geschlechterbeziehungen. Weinheim u.a.: Juventa Verlag 2011.

    OpenAIRE

    Heike Kahlert

    2012-01-01

    Karl Lenz und Marina Adler orientieren sich in ihrem zweibändigen Lehrbuch zur sozialwissenschaftlichen Geschlechterforschung an der etablierten Unterscheidung zwischen Makro- und Mikrosoziologie. Im ersten Band werden theoretische Perspektiven der Geschlechterforschung und unterschiedliche Zusammenhänge zu Kultur nachgezeichnet sowie zentrale Themenfelder einer Sozialstrukturanalyse der Geschlechterordnung fokussiert, nämlich Recht, Politik, Bildung und Arbeit. Im zweiten Band stehen neben d...

  20. Elective culture of bacteria used in bioleaching on pyrrhotite

    Institute of Scientific and Technical Information of China (English)

    邱冠周; 覃文庆; 蓝卓越; 黎维中

    2003-01-01

    Elective culture of bacteria on pyrrhotite was researched, and the selected bacteria were tested on bi-oleaching of marmatite and zinc sulfide ore. The results show that the microorganism cultured on pyrrhotite with va-rious S/Fe ratios is a mixed culture of thiobacillus ferrooxidans and thiobacillus thiooxidans, of which the integral ac-tivity and the oxidation capability of Fe2+ and S are enhanced. With the high Fe and low S content of pyrrhotite, the oxida-tion capacity of ferrous ion is improved; on the contrary, the oxidation capacity of sulfur is advanced. The bioleaching ca-pacity of bacteria cultured on marmatite is better than that of the bacteria cultivated by conventional methods.

  1. Effect of tourmaline on denitrification characteristics of hydrogenotrophic bacteria.

    Science.gov (United States)

    Wang, Wei; Jiang, Hongyan; Zhu, Guangquan; Song, Xueying; Liu, Xingyu; Qiao, Ya

    2016-03-01

    To improve the denitrification characteristics of anaerobic denitrifying bacteria and obviate the disadvantage of use of explosive hydrogen gas, tourmaline, a polar mineral, was added to the hydrogenotrophic denitrification system in this study. Microbial reduction of nitrate in the presence of tourmaline was evaluated to assess the promotion effect of tourmaline on nitrate biodegradation. The experiment results demonstrated that tourmaline speeded up the cultivation process of bacteria from 65 to 36 days. After domestication of the bacteria, nitrate (50 mg NO3 (-)-N L(-1)) was completely removed within 3 days in the combined tourmaline-bacteria system, and the generated nitrite was also removed within 8 days. The reduction rate in this system is higher relative to that in the bacteria system alone. Efficient removal of nitrate by tourmaline-supported anaerobic bacteria (without external hydrogen input) indicated that tourmaline might act as the sole hydrogen donor to sustain autotrophic denitrification. Besides the production of hydrogen, the promoted activity of anaerobic denitrifying bacteria might be caused by the change of water properties, e.g., the pH of aqueous solutions was altered to about 8.0 and the oxidation-reduction potential decreased by 62 % in the tourmaline system. The distinctive effects of tourmaline on bacteria were related to its electric properties. PMID:26545889

  2. Waste streams for algae cultivation

    OpenAIRE

    Kautto, Antti

    2011-01-01

    ALDIGA, short for “Algae from Waste for Combined Biodiesel and Biogas Pro-duction”, aims to develop a concept for a closed circulation of resources in pro-ducing biodiesel and biogas from waste. The project is realized in co-operation between VTT, University of Helsinki, Lahti and Häme Universities of Applied Sciences, SYKE and funded by Tekes. The project’s first work phase ergo this bachelor’s thesis covered the mapping of available and suitable streams to be used in the cultivation of ...

  3. Plants cultivation in controlled containments

    International Nuclear Information System (INIS)

    The plants cultivation in controlled containments permits to the - Departement d'Ecophysiologie Vegetale et de Microbiologie (DVEM) - of the CEA to lead several topics of research. The works of DVEM which are based on the molecular labelling, technique adapted to plants, contribute to understand the plant - soil relationships and the plant growth process. In addition, the staff of DVEM study the impact of pollutant heavy metals, existing in the soil, on plants and the plant stress induced by oxygen, light, ionizing radiations,... and defence mechanisms of plants (F. M.)

  4. Talent Cultivation Project Onthe Move

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In the golden autumn of 2002, a ceremony was held in Lhasa for the Tibet Development Fund to donate to the Talent Cultivation Project. Nineteen Tibetan students currently studying in the hinterland and Tibetan universities and high schools, whose families live below the poverty line, formed the first group of recipients; 24 others belong to the second group to be aided. Radi (Chairman of the People’s Congress of the Tibet Autonomous Region), Lobsang Toinzhub (Vice-Chairman of the TAR government and advisor to the Tibet Development Fund), and Lhamin Soinam Lhunzhub (Vice-Chairman of the CPPCC Tibet Committee and council member of the Tibet Development Fund)

  5. Morphological characterization of Eustrongylides sp. larvae (Nematoda, Dioctophymatoidea) parasite of Rhinella marina (Amphibia: Bufonidae) from Eastern Amazonia.

    Science.gov (United States)

    Melo, Francisco Tiago de Vasconcelos; Melo, Caroline do Socorro Barros; Nascimento, Luciana de Cássia Silva do; Giese, Elane Guerreiro; Furtado, Adriano Penha; Santos, Jeannie Nascimento Dos

    2016-06-01

    Absctract Eustrongylides spp. nematodes have birds as final hosts and uses other vertebrates as intermediate/paratenic host (fish, amphibians and reptiles) and have zoonotic potential. In amphibians, the larvae may be located in the subcutaneous tissues, liver and mesentery, between the muscle fibres, especially in the lower limbs. Rhinella marina, which is widely observed in Brazil, has exhibited complex diversity in its helminth fauna, reflecting the unique habitat of the Amazon biome. For the first time, this study describes the morphological aspects of third-stage larvae of Eustrongylides sp. in Rhinella marina from Santa Cruz do Ararí, Marajó Archipelago, Eastern Amazonia, using light and scanning electron microscopy. PMID:27334826

  6. Application of MALDI-MSI for detection of antimicrobial peptides in tissues of the marine invertebrate Arenicola marina

    Directory of Open Access Journals (Sweden)

    AL Maltseva

    2016-07-01

    Full Text Available Application of MALDI-MSI for detection of antimicrobial peptides in tissues of the marine invertebrate Arenicola marina AL Maltseva1 , VV Starunov1 , PA Zykin2 1 Department of Invertebrate Zoology, St Petersburg State University, St Petersburg, Russia 2 Department of Cytology and Histology, St Petersburg State University, St Petersburg, Russia Accepted June 13, 2016 Abstract MALDI imaging mass-spectrometry (MALDI-MSI is a highly informative approach combining morphology with molecular data. It is widely applied in neuroscience, plant science, cancer-biology, biomedicine, including clinical, and preclinical studies, but not for investigation of endogenous peptides/proteins or metabolites in marine invertebrates. We examined the informativeness of MALDIMSI for analysis of distribution of antimicrobial peptides (arenicins in the polychete Arenicola marina and concluded that it can be successfully used as a primary rough express screening method.

  7. Assessment of trace metal bioaccumulation by Avicennia marina (Forsk.) in the last remaining mangrove stands in Manila Bay, the Philippines.

    Science.gov (United States)

    Gabriel, Ana Veronica S; Salmo, Severino G

    2014-12-01

    Concentrations of lead (Pb), copper (Cu), zinc (Zn), and cadmium (Cd) were evaluated in the sediments, roots and leaves of a mangrove species (Avicennia marina) in Las Piñas-Parañaque Critical Habitat and Ecotourism Area (LPPCHEA), Manila Bay. The concentrations showed a general pattern of Zn > Pb > Cu > Cd in sediments, Cu > Pb > Zn > Cd in roots and Cu > Zn > Pb > Cd in leaves. The trace metal concentrations in both sediments and plant tissues were below contamination threshold levels. Based on computed bioaccumulation indices, A. marina could be used for the phytostabilization and phytoextraction of Cu and Cd. The LPPCHEA mangrove ecosystem is an ecologically important ecosystem that will limit the spread of trace metals to the surrounding environment. PMID:25365960

  8. Hydroponic cultivation of soybean for Bioregenerative Life Support Systems (BLSSs)

    Science.gov (United States)

    De Pascale, Stefania; De Micco, Veronica; Aronne, Giovanna; Paradiso, Roberta

    evaluate the adaptation of soybean plants to hydroponics under controlled environment, as well as the plant response to changing cultural parameters, in order to identify the best cultivation protocol for BLSSs. The optimisation of growth conditions in hydroponics has been pursued being aware that environmental factors acting at sub-optimal levels may also increase the sensitivity of plants to space factors. The influence of the following parameters on plant growth and yield was also studied: - the hydroponic system: sole liquid solution (Nutrient Film Technique, NFT) vs solid substrate (rockwool); - the source of nitrogen in the nutrient solution: nitrate fertilizers vs urea; - the root symbiosis with atmospheric nitrogen-fixing bacteria: absence or presence of Bradyrhizobium japonicum; - the influence of microbes in the rhizosphere: inoculation with a mix containing mycorrhizal and trichoderma species, and beneficial bacteria vs a non-inoculated control. All the treatments were evaluated in terms of agronomic traits (e.g. plant size and seed production), physiological traits (gas exchange, nutrient uptake), chemical composition of seeds and their products, and technical parameters such as resource use efficiency and non-edible biomass production (waste).

  9. Análisis preliminar de la estructura primaria y secundaria del ARNtTrp en tortugas marinas

    Directory of Open Access Journals (Sweden)

    Harvey Infante-Rojas

    2015-06-01

    Full Text Available Actualmente existen siete especies de tortugas marinas, todas amenazadas o en riesgo inminente de extinción. Los estudios con ADN mitocondrial han permitido hacer acercamientos sobre filogenia, evolución, rutas migratorias y centros de dispersión, además para la identificación de polimorfismos y haplotipos, siendo base para planes de manejo y conservación. El presente estudio representa la primera descripción comparada de la estructura primaria y secundaria del ARNtTrp mitocondrial en tortugas marinas. Se realizó un alineamiento múltiple de 26 secuencias del gen que codifica para el ARNtTrp y se propuso la estructura secundaria utilizando el programa ARWEN. Se identificaron potenciales interacciones terciarias por homología comparada con el ARNtTrp de mamíferos. Los resultados mostraron una secuencia consenso de 76 bases con siete regiones conservadas que representan el 76 % de la molécula. Se identificaron polimorfismos que representan tres haplotipos para C. caretta, dos para C. mydas y uno para cada una de las demás especies. Las estructuras secundarias mostraron cambios nucleotídicos puntuales para cada especie y también mostraron que el tallo aceptor, el brazo TψC y el bucle anticodón son motivos conservados en el ARNtTrp de las tortugas marinas. Se encontró un enlace no canónico tipo A-A en el tallo DHU que podría considerarse característico de tortugas marinas. Además, se obtuvo una estructura secundaria consenso en donde se identificaron las siete regiones conservadas, seis posibles interacciones terciarias y el bucle DHU como región variable.

  10. [Determination of apparent mean mass of proteins associated with heme in the hemoglobin molecule of Arenicola marina (L.), Annelida, Polychaeta].

    Science.gov (United States)

    Toulmond, A

    1979-02-12

    Protein and iron concentrations and maximum combined oxygen concentration were measured in the blood of the lugworm Arenicola marina. The calculated mean molecular mass of the heme-associated proteins was higher than that reported for known invertebrate and vertebrate intracellular hemoglobins. The difference is probably due to the presence of polypeptide chains not linked to heme groups in the extracellular annelid hemoglobins. PMID:111865

  11. Isolation of antibacterials from the mangrove, Avicennia marina and their activity against multi drug resistant Staphylococcus aureus

    Institute of Scientific and Technical Information of China (English)

    N.B.Dhayanithi; T. T. Ajith Kumar; R. Ganesha Murthy; K. Kathiresan

    2012-01-01

    Objective: leaf extract of A. marina was tested on the growth of clinically isolated multi-drug resistant Staphylococcus aureus and its bioactive compounds were attempted. Method: Clinical strain of Staphylococcus aureus, were isolated from sputum, pus and blood of different patients and 22 strains were screened for antibiotic susceptibility. Avicennia marina was extracted in different solvents and antibacterial assay was carried out using Kirby-Bauer’s disk diffusion method. Crude methanol extract of the mangrove was loaded on a silica gel column and eluted with chloroform and methanol (9:1 to 1:9) followed by ethyl acetate and methanol (9:1 to 1:9). Based on in vitro assay, the 12th fraction was subjected for minimum inhibitory concentration (MIC). The active fraction was analysed by using a Clarus 500 Perkin Elmer gas chromatography. Result: Based on the antibiotic susceptibility test, six strains (RMSA 6, RMSA12, RMSA16, RMSA18, RMSA19 and RMSA21) were resistance against methicillin, vancomycin and ciprofloxacin. The results indicated that the methanolic leaf extract showed the highest antibacterial activity against all the tested strains RMSA 6 (16mm), RMSA12 (15 mm), RMSA16 (13 mm), RMSA18 (10 mm), RMSA19 (17 mm) and RMSA21 (16 mm). The MIC of the partially purified extract showed potential results against all the multidrug resistant strains however, the lowest concentration was recorded against RMSA 6, RMSA19 and RMSA21 strain. In the GC-MS results, 5 bioactive compounds were identified from the partially purified extract of A.marina. Conclusion:The methanolic extract of A. marina has the more potential candidate to inhibit against multidrug resistant S. aureus.

  12. Structure, Aboveground Biomass, and Soil Characterization of Avicennia marina in Eastern Mangrove Lagoon National Park, Abu Dhabi

    Science.gov (United States)

    Alsumaiti, Tareefa Saad Sultan

    Mangrove forests are national treasures of the United Arab Emirates (UAE) and other arid countries with limited forested areas. Mangroves form a crucial part of the coastal ecosystem and provide numerous benefits to society, economy, and especially the environment. Mangrove trees, specifically Avicennia marina, are studied in their native habitat in order to characterize their population structure, aboveground biomass, and soil properties. This study focused on Eastern Mangrove Lagoon National Park in Abu Dhabi, which was the first mangrove protected area to be designated in UAE. In situ measurements were collected to estimate Avicennia marina status, mortality rate (%), height (m), crown spread (m), stem number, diameter at breast height (cm), basal area (m), and aboveground biomass (t ha-1 ). Small-footprint aerial light detection and ranging (LIDAR) data acquired by UAE were processed to characterize mangrove canopy height and aboveground biomass density. This included extraction of LIDAR-derived height percentile statistics, segmentation of the forest into structurally homogenous units, and development of regression relationships between in situ reference and remote sensing data using a machine learning approach. An in situ soil survey was conducted to examine the soils' physical and chemical properties, fertility status, and organic matter. The data of soil survey were used to create soil maps to evaluate key characteristics of soils, and their influence on Avicennia marina in Eastern Mangrove Lagoon National Park. The results of this study provide new insights into Avicennia marina canopy population, structure, aboveground biomass, and soil properties in Abu Dhabi, as data in such arid environments is lacking. This valuable information can help in managing and preserving this unique ecosystem.

  13. Pingelised päevad / Albina Heider, Kairi Kaldoja, Marina Talisainen ; vahendas Merike Määrits

    Index Scriptorium Estoniae

    Heider, Albina

    2001-01-01

    Albina Heider, Kairi Kaldoja ja Marina Talisainen on TPÜ filoloogiateaduskonna üliõpilastuutorid. Üliõpilastuutor pedagoogikaülikoolis on eriala vanema astme üliõpilane, kes peale vastava koolituse saamist omab õigust oma kompetentsi piires abistada uusi üliõpilasi info ja nõuannetega. Mida küsitakse esimestel ülikoolipäevadel üliõpilastuutorilt kõige enam

  14. Lanfrediella amphicirrus gen. nov. sp. nov. Nematotaeniidae (Cestoda: Cyclophyllidea), a tapeworm parasite of Rhinella marina (Linnaeus, 1758) (Amphibia: Bufonidae)

    OpenAIRE

    Francisco Tiago de Vasconcelos Melo; Elane Guerreiro Giese; Adriano Penha Furtado; Maurílio José Soares; Evonnildo Costa Gonçalves; Antonio Carlos Rosário Vallinoto; Jeannie Nascimento dos Santos

    2011-01-01

    The family Nematotaeniidae, tapeworms commonly found in the small intestines of amphibians and reptiles, includes 27 recognised species distributed among four genera: Bitegmen Jones, Cylindrotaenia Jewell, Distoichometra Dickey and Nematotaenia Lühe. The taxonomy of these cestodes is poorly defined, due in part to the difficulties of observing many anatomical traits. This study presents and describes a new genus and species of nematotaeniid parasite found in cane toads (Rhinella marina) from ...

  15. Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina

    OpenAIRE

    Derycke, S.; Remerie, T.; Vierstraete, A.; Backeljau, T.; Vanfleteren, J.; Vincx, M.; Moens, T.

    2005-01-01

    An inverse correlation between dispersal ability and genetic differentiation among populations of a species is frequently observed in the marine environment. We investigated the population genetic structure of the free-living marine nematode Pellioditis marina. A total of 426 bp of the mitochondrial cytochrome oxidase subunit 1 (COI) gene were surveyed on a geographical scale of approximately 100 km during spring 2003. Nematodes were collected from 2 coastal locations in Belgium, and from 2 e...

  16. Genomics of Probiotic Bacteria

    Science.gov (United States)

    O'Flaherty, Sarah; Goh, Yong Jun; Klaenhammer, Todd R.

    Probiotic bacteria from the Lactobacillus and Bifidobacterium species belong to the Firmicutes and the Actinobacteria phylum, respectively. Lactobacilli are members of the lactic acid bacteria (LAB) group, a broadly defined family of microorganisms that ferment various hexoses into primarily lactic acid. Lactobacilli are typically low G + C gram-positive species which are phylogenetically diverse, with over 100 species documented to date. Bifidobacteria are heterofermentative, high G + C content bacteria with about 30 species of bifidobacteria described to date.

  17. Learning Chemistry from Bacteria

    OpenAIRE

    Clardy, Jon

    2013-01-01

    Dr. Jon Clardy Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University All animals, including humans, originated and evolved on a planet already teeming with bacteria, and the two kingdoms of life have been competing and cooperating through their joint history. Although bacteria are most familiar as pathogens, some bacteria produce small molecules that are essential for the biology of animals and other eukaryotes. This lecture explores some of...

  18. NETS FOR PEACH PROTECTED CULTIVATION

    Directory of Open Access Journals (Sweden)

    Evelia Schettini

    2012-06-01

    Full Text Available The aim of this paper was to investigate the radiometric properties of coloured nets used to protect a peach cultivation. The modifications of the solar spectral distribution, mainly in the R and FR wavelength band, influence plant photomorphogenesis by means of the phytochrome and cryptochrome. The phytochrome response is characterized in terms of radiation rate in the red wavelengths (R, 600-700 nm to that in the farred radiation (FR, 700-800 nm, i.e. the R/FR ratio. The effects of the blue radiation (B, 400-500 nm is investigated by the ratio between the blue radiation and the far-red radiation, i.e. the B/FR ratio. A BLUE net, a RED net, a YELLOW net, a PEARL net, a GREY net and a NEUTRAL net were tested in Bari (Italy, latitude 41° 05’ N. Peach trees were located in pots inside the greenhouses and in open field. The growth of the trees cultivated in open field was lower in comparison to the growth of the trees grown under the nets. The RED, PEARL, YELLOW and GREY nets increased the growth of the trees more than the other nets. The nets positively influenced the fruit characteristics, such as fruit weight and flesh firmness.

  19. Evidence of Uncultivated Bacteria in the Adult Female Bladder

    OpenAIRE

    Wolfe, Alan J.; Toh, Evelyn; Shibata, Noriko; Rong, Ruichen; Kenton, Kimberly; FitzGerald, MaryPat; Mueller, Elizabeth R.; Schreckenberger, Paul; Dong, Qunfeng; Nelson, David E; Brubaker, Linda

    2012-01-01

    Clinical urine specimens are usually considered to be sterile when they do not yield uropathogens using standard clinical cultivation procedures. Our aim was to test if the adult female bladder might contain bacteria that are not identified by these routine procedures. An additional aim was to identify and recommend the appropriate urine collection method for the study of bacterial communities in the female bladder. Consenting participants who were free of known urinary tract infection provid...

  20. Trace elements in the sediments of a large Mediterranean marina (Port Camargue, France): levels and contamination history.

    Science.gov (United States)

    Briant, Nicolas; Bancon-Montigny, Chrystelle; Elbaz-Poulichet, Françoise; Freydier, Rémi; Delpoux, Sophie; Cossa, Daniel

    2013-08-15

    The study of trace elements (Cu, Zn, Pb, As, Hg) and butyltin concentrations in the sediments of Port Camargue enabled assessment of the levels and history of the contamination of the largest European marina linked with the use of antifouling paints. Surface sediments near the boat maintenance area were heavily contaminated with up to 1497 μg g(-1) of Cu, 475 μg g(-1) of Zn, 0.82 μg g(-1) of Hg, 94 μg g(-1) of Pb and over 10,000 ngSn g(-1) of tributyltin (TBT). High concentrations of Hg and TBT indicate ongoing sources of these elements despite the ban on their use as biocides in paints. Sediment cores provided records of contamination since 1969. The peak concentrations of As, Hg, Pb and TBT in the sediment profile reflect their presence on boat hulls when the marina was built at the end of the 1960s. Degradation of TBT in the sediments near the boat maintenance area is slow compared to other less contaminated area of the marina. PMID:23790459

  1. Bioaccumulation and distribution of metals in sediments and Avicenna marina tissues in the Hara Biosphere Reserve, Iran.

    Science.gov (United States)

    Nowrouzi, Mohsen; Pourkhabbaz, Alireza; Rezaei, Mohammadreza

    2012-10-01

    The metal pollution in Sediments and Avicenna marina tissues in the Hara Biosphere Reserve was monitored for Lead (Pb), Cadmium (Cd), and Nickel (Ni) with atomic absorption spectrometer. The results showed that the mean concentration of Pb, Cd, and Ni in the water and sediments were much higher than the recommended threshold limits in the most stations, also the highest means of Pb, Cd, and Ni were observed in Avicenna roots and it were 25.26 ± 4.86, 2.17 ± 0.74, and 26.72 ± 6.17 (μg g(-1)) respectively. Calculating BCF (bioconcentration factor) index illustrates that A. marina accumulates Pb, Cd, and Ni 1.62, 1.52 and 0.73 times greater than sediment levels respectively, So it can show that A. marina may be employed as a biological indicator exposure of Cd, Pb, and Ni with temporal monitoring, also the factories were main sources of metals contamination in the Hara Biosphere Reserve. PMID:22829000

  2. Effects of conventional and biodegradable microplastics on a marine ecosystem engineer (Arenicola marina) and sediment nutrient cycling.

    Science.gov (United States)

    Green, Dannielle Senga; Boots, Bas; Sigwart, Julia; Jiang, Shan; Rocha, Carlos

    2016-01-01

    Effects of microplastic pollution on benthic organisms and ecosystem services provided by sedimentary habitats are largely unknown. An outdoor mesocosm experiment was done to realistically assess the effects of three different types of microplastic pollution (one biodegradable type; polylactic acid and two conventional types; polyethylene and polyvinylchloride) at increasing concentrations (0.02, 0.2 and 2% of wet sediment weight) on the health and biological activity of lugworms, Arenicola marina (Linnaeus, 1758), and on nitrogen cycling and primary productivity of the sediment they inhabit. After 31 days, A. marina produced less casts in sediments containing microplastics. Metabolic rates of A. marina increased, while microalgal biomass decreased at high concentrations, compared to sediments with low concentrations or without microplastics. Responses were strongest to polyvinylchloride, emphasising that different materials may have differential effects. Each material needs to be carefully evaluated in order to assess their risks as microplastic pollution. Overall, both conventional and biodegradable microplastics in sandy sediments can affect the health and behaviour of lugworms and directly or indirectly reduce primary productivity of these habitats. PMID:26552519

  3. Excitation energy transfer in intact cells and in the phycobiliprotein antennae of the chlorophyll d containing cyanobacterium Acaryochloris marina.

    Science.gov (United States)

    Theiss, Christoph; Schmitt, Franz-Josef; Pieper, Jörg; Nganou, Collins; Grehn, Moritz; Vitali, Marco; Olliges, Rachel; Eichler, Hans Joachim; Eckert, Hann-Jörg

    2011-08-15

    The cyanobacterium Acaryochloris marina is unique because it mainly contains Chlorophyll d (Chl d) in the core complexes of PS I and PS II instead of the usually dominant Chl a. Furthermore, its light harvesting system has a structure also different from other cyanobacteria. It has both, a membrane-internal chlorophyll containing antenna and a membrane-external phycobiliprotein (PBP) complex. The first one binds Chl d and is structurally analogous to CP43. The latter one has a rod-like structure consisting of three phycocyanin (PC) homohexamers and one heterohexamer containing PC and allophycocyanin (APC). In this paper, we give an overview on the investigations of excitation energy transfer (EET) in this PBP-light-harvesting system and of charge separation in the photosystem II (PS II) reaction center of A. marina performed at the Technische Universität Berlin. Due to the unique structure of the PBP antenna in A. marina, this EET occurs on a much shorter overall time scale than in other cyanobacteria. We also briefly discuss the question of the pigment composition in the reaction center (RC) of PS II and the nature of the primary donor of the PS II RC. PMID:21396735

  4. Fine-scale spatial distribution of the common lugworm Arenicola marina, and effects of intertidal clam fishing

    Science.gov (United States)

    Boldina, Inna; Beninger, Peter G.

    2014-04-01

    Despite its ubiquity and its role as an ecosystem engineer on temperate intertidal mudflats, little is known of the spatial ecology of the lugworm Arenicola marina. We estimated lugworm densities and analyzed the spatial distribution of A. marina on a French Atlantic mudflat subjected to long-term clam digging activities, and compared these to a nearby pristine reference mudflat, using a combination of geostatistical techniques: point-pattern analysis, autocorrelation, and wavelet analysis. Lugworm densities were an order of magnitude greater at the reference site. Although A. marina showed an aggregative spatial distribution at both sites, the characteristics and intensity of aggregation differed markedly between sites. The reference site showed an inhibition process (regular distribution) at distances fishing-impacted vs. the non-impacted site reflect similar findings for other components of these two mudflat ecosystems, suggesting common community-level responses to prolonged mechanical perturbation: a decrease in naturally-occurring aggregation. This change may have consequences for basic biological characteristics such as reproduction, recruitment, growth, and feeding.

  5. Characterization of selected Gram-negative non-fermenting bacteria isolated from honey bees (Apis mellifera carnica)

    OpenAIRE

    Loncaric, Igor; Ruppitsch, Werner; Licek, Elisabeth; Moosbeckhofer, Rudolf; Busse, Hans-Jürgen; Rosengarten, Renate

    2011-01-01

    International audience This study was conducted to improve the knowledge about bacteria associated with honey bees, Apis mellifera carnica. In this survey, the diversity of Gram-negative non-fermenting bacteria isolated and cultivated from pollen loads, honey sac, freshly stored nectar, and honey was investigated. Bacteria were characterized by a polyphasic approach. Based on morphological and physiological characteristics and comparison of isolates protein patterns after sodium dodecyl su...

  6. Effect of Diuron on aquatic bacteria in laboratory-scale wastewater treatment ponds with special reference to Aeromonas species studied by colony hybridization.

    Science.gov (United States)

    Sumpono; Perotti, P; Belan, A; Forestier, C; Lavedrine, B; Bohatier, J

    2003-01-01

    Six laboratory-scale wastewater treatment ponds were filled with sediment and water obtained from a reference pond (a wastewater treatment plant located in a rural environment at Montel-de-Gelat, Puy-de-Dôme, France). They were kept at 20 degrees C, with alternative light and dark periods (12 h-12 h), and fed with raw effluent supplied weekly. Three of them were treated with Diuron (dissolved in DMSO) at a final concentration 10 mg/l, while the other three received only DMSO. Physico-chemical parameters, total bacteria, cultivable bacteria, and Aeromonas spp. were measured periodically until 41 days after the Diuron contamination. Total bacteria were treated with 4,6-diamidino 2-phenylindole (DAPI) and counted by epifluoroscence microscopy. The cultivable bacteria were quantified on plate count agar medium and Aeromonas spp. using colony hybridization. In the contaminated pilots, biochemical oxygen demand (BOD5), chemical oxygen demand (COD), suspended solids (SS), volatile suspended solids (VSS), ammonium, phosphorus, and bacteria increased, but dissolved oxygen decreased. The abundance of total bacteria, cultivable bacteria (multiplied by 30), and Aeromonas spp. increased for two weeks after Diuron introduction, reverting to initial values three weeks later. The percentage of cultivable bacteria relative to total bacteria was 0.2% in controls and 1.2% in treated pilots, while the percentage of Aeromonas spp. relative to cultivable bacteria decreased from 6-10% to 2%. Our results suggest that Diuron, which acts on the photosystem II of phototrophs, supports the development of cultivable bacteria through new carbon sources derived from the decomposition of photosynthetic micro-organisms, but does not specifically support Aeromonas spp. PMID:12656266

  7. OPTIMIZATION OF CONDITIONS THE CULTIVATION FOR HYALURONIDASE PRODUCTION BY STREPTOCOCCUS PYOGENES

    OpenAIRE

    Lukyanenko T.V.

    2011-01-01

    Hyaluronidase is used in biotechnology processes and medicine. A lot of the preparations of hyaluronidase produce from animal source with limited sources of microbial origin. Bacterial hyaluronidase were reported to be virulence factors that facilitate the spreading of bacteria in host tissues by degradation of hyaluronic acid. This article included the results of studies by the choice of optimal conditions of the cultivation for hyaluronidase production by teststr...

  8. The MARINA model (Model to Assess River Inputs of Nutrients to seAs): Model description and results for China.

    Science.gov (United States)

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-08-15

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for China of the Global NEWS-2 (Nutrient Export from WaterSheds) model with an improved approach for nutrient losses from animal production and population. We use the model to quantify dissolved inorganic and organic nitrogen (N) and phosphorus (P) export by six large rivers draining into the Bohai Gulf (Yellow, Hai, Liao), Yellow Sea (Yangtze, Huai) and South China Sea (Pearl) in 1970, 2000 and 2050. We addressed uncertainties in the MARINA Nutrient model. Between 1970 and 2000 river export of dissolved N and P increased by a factor of 2-8 depending on sea and nutrient form. Thus, the risk for coastal eutrophication increased. Direct losses of manure to rivers contribute to 60-78% of nutrient inputs to the Bohai Gulf and 20-74% of nutrient inputs to the other seas in 2000. Sewage is an important source of dissolved inorganic P, and synthetic fertilizers of dissolved inorganic N. Over half of the nutrients exported by the Yangtze and Pearl rivers originated from human activities in downstream and middlestream sub-basins. The Yellow River exported up to 70% of dissolved inorganic N and P from downstream sub-basins and of dissolved organic N and P from middlestream sub-basins. Rivers draining into the Bohai Gulf are drier, and thus transport fewer nutrients. For the future we calculate further increases in river export of nutrients. The MARINA Nutrient model quantifies the main sources of coastal water pollution for sub-basins. This information can contribute to formulation of

  9. 印尼3个地区热泉中可培养细菌的分子鉴定与系统发育分析%Molecular Identification and Phylogenetic Analysis of Cultivable Bacteria From Three Hot Springs in Indonesia

    Institute of Scientific and Technical Information of China (English)

    王帅; 林学政; 黄晓航; ZILDA Dewi Seswita; CHASANAH Ekowati

    2011-01-01

    采用MSM寡营养培养基从印度尼西亚Pantai cermin,Kalianda和Banyu wedang地区的热泉水样、泥样以及沉积物中根据菌落的形态学特征共分离获得69株细菌,通过菌株的16S rDNA的限制性片段长度多态性(PCR-RFLP)分析、序列比对和生理生化分析,对其进行鉴定并构建系统发育树.结果表明,分离获得的69株细菌菌株分别属于8种基因型(Ⅰ~Ⅷ),其中1类(基因型Ⅰ)属于短芽孢杆菌属(Brevibacillus),约占20.28%;1类(基因型Ⅷ)属于地芽孢杆菌属(Geobacillus),约占14.49%;其余6类(基因型Ⅱ,Ⅲ,Ⅳ,Ⅴ,Ⅵ,Ⅶ)均属于芽孢杆菌属(Bacillus),约占总菌株数量的65.22%,为优势菌群.分离获得的8类细菌均为革兰氏阳性兼性好氧菌,接触酶、氧化酶反应均呈阳性,吲哚反应都呈阴性.产酶实验表明,分离到的菌株在中性pH值,37~70℃范围内能够分泌多种耐热的水解酶类,4种基因型(Ⅰ,Ⅱ,Ⅲ,Ⅳ)的菌株分泌蛋白酶,5种基因型(Ⅳ,Ⅴ,Ⅵ,Ⅶ,Ⅷ)的菌株分泌水解脂肪酶,1种基因型(Ⅳ)的菌株分泌淀粉酶,并且发现其中1种基因型(Ⅳ)的芽孢杆菌可同时产生3种水解酶类.利用限制性内切酶AluI对16S rDNA进行的RFLP技术分析结果表明,利用该技术能够对嗜热细菌的16SrDNA多样性进行有效的分析,经凝胶电泳图谱将菌种鉴定到属的水平,揭示了印尼热泉生态系统中蕴藏着丰富的嗜热菌菌种资源.%Based on the biological morphological features of the bacterial communities, totally 69 strains of thermophilic bacteria are isolated from water, soil or sediment samples of three hot springs respectively in Pantai cermin, Kalianda and Banyu wedang of Indonesia. By means of the bacterial 16S rDNA PCR-RFLP analysis, the 16S rDNA sequence comparison among the bacteria, and the physiological and biochemical a-nalysis, the bacteria are identified and their phylogenetic tree is set up. It is shown in the study results that the 69

  10. Aerobic Anoxygenic Phototrophic Bacteria

    OpenAIRE

    Yurkov, Vladimir V.; Beatty, J. Thomas

    1998-01-01

    The aerobic anoxygenic phototrophic bacteria are a relatively recently discovered bacterial group. Although taxonomically and phylogenetically heterogeneous, these bacteria share the following distinguishing features: the presence of bacteriochlorophyll a incorporated into reaction center and light-harvesting complexes, low levels of the photosynthetic unit in cells, an abundance of carotenoids, a strong inhibition by light of bacteriochlorophyll synthesis, and the inability to grow photosynt...

  11. Metallization of bacteria cells

    Institute of Scientific and Technical Information of China (English)

    LI; Xiangfeng; (黎向锋); LI; Yaqin; (李雅芹); CAI; Jun; (蔡军); ZHANG; Deyuan; (张德远)

    2003-01-01

    Bacteria cells with different standard shapes are well suited for use as templates for the fabrication of magnetic and electrically conductive microstructures. In this paper, metallization of bacteria cells is demonstrated by an electroless deposition technique of nickel-phosphorus initiated by colloid palladium-tin catalyst on the surfaces of Citeromyces matritensis and Bacillus cereus. The activated and metallized bacteria cells have been characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM) and X-ray diffraction analysis (XRD). Results showed that both Citeromyces matritensis and Bacillus cereus had no deformation in shape after metallization; the metallized films deposited on the surfaces of bacteria cells are homogeneous in thickness and noncrystalline in phase structure. The kinetics of colloid palladium-tin solution and electroless plating on bacteria cells is discussed.

  12. Effects of cultivation frequency on sugarcane yields

    Science.gov (United States)

    Reducing the number of cultivations during one or more years of a four year crop cycle reduces production expenses and could increase profitability if yields are not adversely affected. This study was initiated to determine the effects of cultivation on yields of sugarcane grown on a clay soil both ...

  13. Multiple outcomes of cultivation in the Sahel

    DEFF Research Database (Denmark)

    Rasmussen, Laura Vang; Reenberg, Anette

    2015-01-01

    A default assumption about the Sahel is that farmers consider food provision for the family as the sole reason for cultivation. The degree to which this ‘cultivation for food’ assumption has been embedded in the scientific literature on land use changes is signified by the fact that hardly any st...

  14. Isolation and cultivation of Lyme disease spirochetes.

    OpenAIRE

    Barbour, A G

    1984-01-01

    The successful isolation and cultivation of Lyme disease spirochetes traces its lineage to early attempts at cultivating relapsing fever borreliae. Observations on the growth of Lyme disease spirochetes under different in vitro conditions may yield important clues to both the metabolic characteristics of these newly discovered organisms and the pathogenesis of Lyme disease. Images FIG. 1

  15. My Understanding on Cultivation of Autonomous Learning

    Institute of Scientific and Technical Information of China (English)

    张金玉

    2007-01-01

    Autonomous learning has been popular in western education system for some time, this article aims to analyze the connotation and the necessity of cultivating learner autonomy, and then offer some strategies about the cultivation of learner autonomy from a chinese perspective.

  16. Regularities of polymer substances transformation into methane by thermophilic anaerobic bacteria

    OpenAIRE

    V. І. Karpenko; L. S. Yastremska; І. G. Burun; Y. V. Lembey; O. S. Tatarchenko

    2006-01-01

    The paper shows the regularities of polymer substances transformation into methane by extracted thermophilic anaerobic bacteria. The sequence of substrate use by the methane generating bacteria corresponds to the energy efficiency of the methane genesis reactions as in the first place hydrogen is used and then acetate is. Combined cultivation of extracted different anaerobic cultures gives the opportunity to increase ethanol and hydrogen yield as well as the effectiveness of methane formation.

  17. Estudio para la integración del régimen de caudales ecológicos en la estimación del recurso disponible de los acuíferos. Caso 4: Sistemas Serpis-Marina Baja-Marina Alta-Vinalopó

    OpenAIRE

    GONZÁLEZ CANALES, JUAN LUIS

    2015-01-01

    [EN] This study intents to estimate the environmental restrictions of groundwater bodies considered by the considered by the Jucar Hydrographic Confederation that enable us to achieve the ecological flow at all points of the rivers components of the Júcar exploited systems as with Turia, Marina-Baja , Marina-Alta and Vinalopo-Alcanti systems. To this end, it has been carried out the process of adapting the flows provided to each river stretch in relation to three hypotheses. The first h...

  18. Larger body size at metamorphosis enhances survival, growth and performance of young cane toads (Rhinella marina.

    Directory of Open Access Journals (Sweden)

    Elisa Cabrera-Guzmán

    Full Text Available Body size at metamorphosis is a key trait in species (such as many anurans with biphasic life-histories. Experimental studies have shown that metamorph size is highly plastic, depending upon larval density and environmental conditions (e.g. temperature, food supply, water quality, chemical cues from conspecifics, predators and competitors. To test the hypothesis that this developmental plasticity is adaptive, or to determine if inducing plasticity can be used to control an invasive species, we need to know whether or not a metamorphosing anuran's body size influences its subsequent viability. For logistical reasons, there are few data on this topic under field conditions. We studied cane toads (Rhinella marina within their invasive Australian range. Metamorph body size is highly plastic in this species, and our laboratory studies showed that larger metamorphs had better locomotor performance (both on land and in the water, and were more adept at catching and consuming prey. In mark-recapture trials in outdoor enclosures, larger body size enhanced metamorph survival and growth rate under some seasonal conditions. Larger metamorphs maintained their size advantage over smaller siblings for at least a month. Our data support the critical but rarely-tested assumption that all else being equal, larger body size at metamorphosis is likely to enhance an individual's long term viability. Thus, manipulations to reduce body size at metamorphosis in cane toads may help to reduce the ecological impact of this invasive species.

  19. Antimicrobial activity of Avicennia marina extracts ethanol, methanol & glycerin against Penicillium digitatum (citrus green mold

    Directory of Open Access Journals (Sweden)

    Behrooz Alizadeh Behbahani

    2013-01-01

    Full Text Available Finding natural antimicrobial compound with minimum side effects on health the is important because of microorganisms are more antibiotics resistance. Avicenniaceae family is a member of true mangrove plants which has one genus, 11 species and several sub species. Avicennia marina (Forssk. Vierh is the most current species among these plants in Iranian mangrove forest. In this study, mangrove leaves were dried in shadow and appropriate condition. After extraction with ethanol 96 degree, methanol 96 degree and 20% glycerin antimicrobial effect of extract were determined by "screening antimicrobial activity" and "disk agar diffusion test" in 20, 40, 60 and 80 Percent concentration of the extract against Penicillium digitatum. The results showed that mangrove leaf extract in screening antimicrobial activity method in 2000 μg/ml, were inhibited Penicillium digitatum of growth. In "disk agar diffusion test, mangrove extract, in 20, 40, 60 and 80 Percent concentration, the mentioned extract were shown inhibition effect on mold pathogen growth. Ethanol 96 degree extract was more effective than methanol 96 degree and 20% glycerin extract as antimicrobial against on Penicillium digitatum (p Results showed extract of mangrove can be used as natural antimicrobial in food products.

  20. Algas marinas bentónicas de la Isla Gorgona, costa pacífica colombiana

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    Mónica Murillo Muñoz

    2014-02-01

    Full Text Available Se presenta el listado de las algas marinas bénticas del Parque Nacional Natural Isla Gorgona, el inventario corresponde a la flora algal asociada a los diferentes ambientes marinos de la isla, a saber: arrecifes coralinos y fondos blandos. El monitoreo de las comunidades de algas se llevó a cabo entre octubre de 2010 y mayo de 2011, se realizó una estimación de abundancia y cobertura para lo cual se establecieron transeptos paralelos a la línea de costa y se evaluó el porcentaje de cobertura en cuadrantes de 0.25m². Se reportó un total de 43 especies para los dos ambientes estudiados (coralino y fondos blandos, 24 Rhodophyta, 12 Clorophyta, 6 Ochrophyta y una Cyanobacteria. El grupo más representativo fue el perteneciente a la clase Rhodophyceae, que correspondió al 55.8% de la flora inventariada. Los resultados de nuevos registros en la isla ratifican su importancia fitogeográfica, por cuanto la composición florística insular contribuye significativamente a la biodiversidad de la costa pacífica colombiana, destacándose la presencia de arrecifes coralinos como los principales ambientes marinos para el desarrollo de la flora algal de la región.

  1. Relaciones históricas entre las tortugas marinas y las sociedades del finis terra bajacaliforniano

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    Raquel Briseño Dueñas

    2013-09-01

    Full Text Available Este trabajo presenta la historia ambiental de las relaciones entre las tortugas marinas y las sociedades que han habitado la Región del Cabo que se encuentra en la punta sur de la Península de Baja California. En este finis terra, sumamente aislado, han abundado esos quelonios y han sido un importante recurso alimenticio para sus habitantes, desde la prehistoria a la fecha. Su pesca fue sustentable hasta mediados del siglo XX, cuando empezó a ser desmedida a causa de su uso industrial; lo que condujo a una veda total para evitar su extinción. Actualmente con la modernización de la región, convertida al turismo de masas, estos animales emblemáticos han tenido que enfrentar nuevas amenazas, pero también han sido incorporados en diversos esquemas de conservación que han tenido éxito, por lo que es factible prever su recuperación.

  2. Seawater salinity and blood acid-base balance in the lugworm, Arenicola marina (L.).

    Science.gov (United States)

    Toulmond, A; Jouin, C

    1992-03-01

    The kinetics of variations in the blood acid base balance (ABB) were investigated in a moderately euryhaline osmoconformer, the lugworm Arenicola marina (L.), exposed to natural and experimental hypo- or hyperosmotic shocks. In natural as well as in experimental conditions, a hyposmotic shock induced a transient and essentially metabolic acidosis, probably linked to the ionic readjustments following the shock, which was rapidly overridden by a metabolic alkalosis. In field conditions, a new ABB equilibrium was then attained, the metabolic alkalosis being neutralized by the respiratory and metabolic acidosis occurring normally in the lugworm during low tide. Conversely, in the normoxic conditions of our laboratory experiments, a new ABB equilibrium was never reached. Under experimental conditions, a hyperosmotic shock always induced a respiratory and metabolic acidosis. In the field, this phenomenon must occur at the beginning of high tide and must help to restore normal blood ABB in lugworms submitted to a moderate hyposmotic shock during low tide. All the observed blood ABB variations reveal the complex intracellular processes through which the lugworm submitted to moderate osmotic shocks tentatively regulates, sometimes without any real success, its osmoticity and volume. Obviously, complementary physical, physiological and behavioral mechanisms allow the lugworm to live in sediments washed by almost fresh water during a 7-8 h 'low tide'. PMID:1604064

  3. The impact of the herbicide atrazine on growth and photosynthesis of seagrass, Zostera marina (L.), seedlings

    International Nuclear Information System (INIS)

    Highlights: → Impact of the widely used herbicide atrazine on eelgrass seedlings was studied. → Atrazine presents a threat to eelgrass seedlings growth and photosynthesis. → The impact of atrazine on eelgrass seedlings is much higher than for adult plants. - Abstract: The impact of the widely used herbicide atrazine on seedling growth and photosynthesis of eelgrass was determined. The long-term impact of the herbicide atrazine (1, 10 and 100 μg/L) on growth of eelgrass Zostera marina (L.) seedlings, maintained in outdoor aquaria, was monitored over 4 weeks. Exposure to 10 μg/L atrazine resulted in significantly lower plant fresh weight and total chlorophyll concentration and up to 86.67% mortality at the 100 μg/L concentration. Short-term photosynthetic stress on eelgrass seedlings was determined and compared with adult eelgrass using chlorophyll fluorescence. The effective quantum yield in eelgrass seedlings was significantly depressed at all atrazine concentrations (2, 4, 8, 16, 32 and 64 μg/L) even within 2 h and remained at a lower level than for adult plants for each concentration. These results indicate that atrazine presents a potential threat to seagrass seedling functioning and that the impact is much higher than for adult plants.

  4. Composición Esterólica de la Esponja Marina Xestospongia Muta

    Directory of Open Access Journals (Sweden)

    Carmenza Duque

    2009-10-01

    Full Text Available De la esponja marina Xestospongia muta recolectada en la bahía de Santa Marta, Caribe Colombiano, se aislaron por Cromatografía en Columna (CC sobre Silica gel, eluyendo con Benceno: Acetato de Etilo 10:2, dos fracciones esteróiicas; XMl (Rf = 0,28,Si02/Benceno; AcOEt 10:2 y XM2 (Rf = 0,24,SiO2/Benceno : AcOEt 10:2, Los esteróles presentes en estas dos fracciones fueron sometidos a Cromatografía Liquida de Alta Eficiencia (CLAE preparativa y analizados por Cromatografía de Gases (CG y Cromatografía de Gases acoplada en Espectometrla de Masas (CG-EM, Catorce esteróles fueron separados y 13 idenficados. La mayoría de ellos fueron 3n-0H-A^-Esteróles (Aproximadamente el 87% de los esteróles totales incluyendo al (24R + 24S-5,28-Estigmastadien-3i3-24-diol, mezclaepimérica por primera vez asi reportada en la naturaleza. El porcentaje restante correspondió a Estañóles y a un 6,2% de compuestos sin identificar.

  5. Caracterización parcial y espectro antimicrobiano de substancias inhibitorias producidas por Alteromonas marinas

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    Jorge León

    2014-06-01

    Full Text Available Se caracterizan parcialmente substancias inhibitorias producidas por cepas marinas del género Alteromonas spp. Pruebas de precipitación de extractos crudos de sobrenadantes de las cepas N22.C y N11.6 con concentraciones saturantes de sulfato de amonio y filtrados en columnas de Sephadex G-25 muestran la producción de substancias inhibitorias (SI de naturaleza proteinácea. Otros ensayos de caracterización revelan que dichas substancias tienen un amplio espectro de actividad antibiótica frente a cepas de colección patógenas de peces, moluscos y crustáceos. Asimismo, muestran a las SI como termosensibles a 90oC en 45 min y con capacidad de mantener estabilidad inhibitoria dentro, del rango de pH de 3,0 a 9,0 hasta por 15 min. La actividad antibiótica de las substancias frente a Vibrio anguillarum NCMB 2133, V. anguillarum ATCC 19264 y Aeromonas salmonicida 67,79 fueron comparativamente equivalentes a 30 ppm del antibiótico oxitetraciclina (OTC.

  6. Com'è profondo il mare Gli uominiche lo misurano, l'Istituto Idrografico della Marina

    Directory of Open Access Journals (Sweden)

    Alessandro Nobili

    2014-03-01

    Full Text Available Measuring sea depths: the Italian hydrographic InstituteSince 1873 the Italian Hydrographic Institute (Istituto Idrografico della Marina - IIM has been involved in sea depth measuring in order to improve safety of navigation. The main mission of the institute is to provide hydrographic services for waters of Italian national responsibility required by the International Convention for the Safety of Life at Sea (SOLAS. This role requires the coordination and determination of policy and standards which covers both hydrographic surveying and charting, as well as contributing tothe coordination, exchange and standards related to geospatial data in general. IIM’s traditions and methods take their origins from the pioneers of hydrography; in this paper the author briefl y describes the main stages in IIM’s history, passing throught scientifi c and international activities and concludine with challenges and prospects of digital era.

  7. Corticosterone-immune interactions during captive stress in invading Australian cane toads (Rhinella marina).

    Science.gov (United States)

    Graham, Sean P; Kelehear, Crystal; Brown, Gregory P; Shine, Richard

    2012-07-01

    Vertebrates cope with physiological challenges using two major mechanisms: the immune system and the hypothalamic pituitary-adrenal axis (e.g., the glucocorticoid stress response). Because the two systems are tightly integrated, we need simultaneous studies of both systems, in a range of species, to understand how vertebrates respond to novel challenges. To clarify how glucocorticoids modulate the amphibian immune system, we measured three immune parameters and plasma corticosterone (CORT), before and after inflicting a stressor (capture and captive confinement) on introduced cane toads (Rhinella marina) near their invasion front in Australia. Stress increased CORT levels, decreased complement lysis capacity, increased leukocyte oxidative burst, and did not change heterologous erythrocyte agglutination. The strength of the CORT response was positively correlated with leukocyte oxidative burst, and morphological features associated with invasiveness in cane toads (relative leg length) were correlated with stress responsiveness. No immune parameter that we measured was affected by a toad's infection by a parasitic nematode (Rhabdias pseudosphaerocephala), but the CORT response was muted in infected versus uninfected toads. These results illustrate the complex immune-stress interactions in wild populations of a non-traditional model vertebrate species, and describe immune adaptations of an important invasive species. PMID:22713726

  8. Influence of Temperature and Salinity on Germination of Eelgrass (Zostera marina L.) Seeds

    Institute of Scientific and Technical Information of China (English)

    PAN Jinhua; YANG Guanpin; JIANG Xin; LI Xiaojie; CONG Yizhou; ZHANG Zhuangzhi; LI Zhiling; ZHOU Weili; HAN Houwei; LUO Shiju

    2011-01-01

    Seagrass restoration as part of ocean ecosystem protection has been launched for many years all over the world, but intensive research on this subject in China has just begun in recent years. Seed broadcasting has been widely accepted as the most potentially useful method for seagrass restoration over large areas. We examined the influence of key environmental factors on seed germination to help promote eelgrass bed restoration. Under anoxic conditions, the influence of temperature and salinity on the germination rate of eelgrass (Zostera marina L.) seeds was examined at different combinations of four temperatures (4, 9, 14, and 24℃) and nine salinities (5 to 45, increment of 5). The effect of significant interaction of temperature and salinity on germination rate was observed (ANOVA)(P<0.001). The highest germination rate (83.3 ±3.5)% was reached in 8 weeks at 14℃ and salinity 5. Higher temperature significantly increased the germination rate at salinity 5 (P<0.001) during the whole observation period except for 24℃,while lower salinity significantly increased the germination rate at 14℃ (P<0.001). Although significant interaction was found between temperature and salinity (P<0.001), the influence of salinity was stronger than that of temperature for the germination of eelgrass seeds. These results provide useful information for the propagation of artificial seedlings for seagrass restoration in China.

  9. Preparation of intact chloroplasts by chemically induced lysis of the green alga Dunaliella marina.

    Science.gov (United States)

    Kombrink, E; Wöber, G

    1980-07-01

    A method for the isolation in high yield of intact chloroplasts from the unicellular green alga Dunaliella marina (Volvocales) is described. This procedure uses chemically induced lysis of cells with the polycationic macromolecules, DEAE-dextran (M=500,000) or poly-D,L-lysine (M=30,000-70,000). Reaction conditions were optimized with respect to obtaining a high yield of intact chloroplasts, after isopycnic centrifugation in a linear sucrose density gradient, by varying the concentration of polycation and the temperature and pH of incubation. Broken chloroplasts devoid of the stromal marker enzymes fructosebisphosphate phosphatase and ribulosebisphosphate carboxylase, but containing mitochondrial (fumarase) and microbody (catalase) contamination, were banded at a bouyant density of 1.18 g cm(-3). Intact chloroplasts, as indicated by their retention of alkaline fructosebisphosphate phosphatase and ribulosebisphosphate carboxylase, were found in 30% yield (chlorophyll in intact cells, 100%) at an equilibrium density of 1.24 g cm(-3). Contamination by cytoplasmic material (pyruvate kinase), mitochondria, and microbodies was less than 8% each. PMID:24306242

  10. Petróleo, seguridad ambiental y exploración petrolera marina en Colombia

    Directory of Open Access Journals (Sweden)

    Avellaneda Cusaría, Alfonso

    2005-01-01

    Full Text Available Este artículo reseña un siglo de las actividades petroleras en Colombia, sus consecuencias en los territorios indígenas, así como los riesgos ambientales y para la salud, destacando por -otra parte- el papel que han asumido algunas compañías para controlar esos riesgos. Se discute las implicaciones sociales y ambientales, directas e indirectas, de las distintas fases de las actividades petroleras en la parte continental del país, y sus relaciones históricas con los procesos de violencia donde ha habido explotación petrolera desde el siglo XX. Finalmente, se abre una discusión sobre la nueva política petrolera del Estado colombiano, con la exploración costa fuera y la ausencia de control ambiental para proteger los ecosistemas que subyacen la licitación de áreas para los próximos años, sin asumir el derecho internacional en la protección marina.

  11. Disturbance of benthic infauna by sediment-reworking activities of the lugworm Arenicola marina

    Science.gov (United States)

    Flach, E. C.

    The influence of the lugworm Arenicola marina on the abundance of other benthic species was studied in the westernmost part of the Wadden Sea. Small squares (1 m 2) within depopulated 144-m 2 plots were recolonized with various (naturally-occurring) lugworm densities (0-10-20-40-80 and 0-25-50-75-100 per m 2). These plots were sampled during the summer. Lugworms were found to have a strongly negative effect on the densities of C. volutator. At 0-density lugworms, the numbers of C. volutator were high. These were halved at 17 lugworms per m 2 ( i.e. the mean density on the tidal flats of the Dutch Wadden Sea), and were further reduced at higher lugworm densities ( e.g. 20% remained at 40 lugworms per m 2). Laboratory observations of Corophium behaviour in the presence of Arenicola suggest that sediment-reworking lugworms stimulate Corophium to emigrate. Effects of lugworms on other benthic species were also studied in the same way. Lugworms were found to have strongly negative effects on the juvenile densities of various worm and bivalve species ( Nereis diversicolor, Nephtys hombergii, Heteromastus filiformis, Scoloplos armiger, Pygospio elegans, Capitella capitata and Mya arenaria, Cerastoderma edule, Macoma balthica, Angulus tenuis, respectively).

  12. Microalgal cultivation and utilization in sustainable energy production

    Energy Technology Data Exchange (ETDEWEB)

    Lakaniemi, A.-M.

    2012-07-01

    Microalgae are a promising feedstock for biofuel and bioenergy production due to their high photosynthetic efficiencies, high growth rates and no need for external organic carbon supply. However, microalgal biomass cultivation for energy production purposes is still rare in commercial scale. Further research and development is needed to make microalgal derived energy sustainable and economically competitive. This work investigated cultivation of fresh water microalga Chlorella vulgaris and marine microalga Dunaliella tertiolecta and their utilization in production of hydrogen, methane, electricity, butanol and bio-oil after bulk harvesting the biomass. Growth of the two microalgae was studied in five different photobioreactor (PBR) configurations especially concentrating on the quantification and characterization of heterotrophic bacteria in non-axenic microalgal cultivations and microalgal utilization of different nitrogen sources. Anaerobic cultures used for the energy conversion processes were enriched from a mesophilic municipal sewage digester separately for production of H{sub 2}, CH{sub 4} and electricity from the two microalgal species. After culture enrichment, energy conversion yields of microalgal biomass to the different energy carriers were compared. In summary, this study demonstrated that both C. vulgaris and D. tertiolecta can be used for production of Hv(2), CHv(4), electricity, butanol and lipids. Based on this study C. vulgaris is more suitable for bioenergy production than D. tertiolecta. Depending on cellular lipid content, lipid utilization for bio-oil production and anaerobic digestion were the most potent means of converting C. vulgaris biomass to energy. The study also revealed diverse microbial communities in non-axenic microalgal photobioreactor cultures and in anaerobic consortia converting microalgal biomass to energy carriers

  13. Sustainable gerbera production realised with the next generation greenhouse cultivation

    NARCIS (Netherlands)

    Gelder, de A.; Warmenhoven, M.G.; Dieleman, J.A.

    2014-01-01

    In spite of a considerable decrease during the last decade, energy consumption in greenhouse cultivation remains high. More sustainable greenhouse horticulture can be realised by developing new greenhouse and cultivation concepts. Recently, we developed the Next Generation Greenhouse Cultivation sys

  14. Bacterial community analysis of Tatsoi cultivated by hydroponics.

    Science.gov (United States)

    Koo, Ok K; Kim, Hun; Kim, Hyun J; Baker, Christopher A; Ricke, Steven C

    2016-07-01

    Tatsoi (Brassica narinosa) is a popular Asian salad green that is mostly consumed as a source of fresh produce. The purpose of this study was to assess the microbial diversity of Tatsoi cultivated in a hydroponic system and of its ecosystem. Tatsoi leaves, nutrient solution, and perlite/earth samples from a trickle feed system (TFS) and an ebb-and-flow system (EFS) were collected and their microbial communities were analyzed by pyrosequencing analysis. The results showed that most bacteria in the leaves from the TFS contained genus Sporosarcina (99.6%), while Rhizobium (60.4%) was dominant in the leaves from the EFS. Genus Paucibacter (18.21%) and Pelomonas (12.37%) were the most abundant microbiota in the nutrient solution samples of the TFS. In the EFS, the nutrient solution samples contained mostly genus Rhodococcus and Acinetobacter. Potential microbial transfer between the leaves and the ecosystem was observed in the EFS, while samples in the TFS were found to share only one species between the leaves, nutrient solution, and earth. Together, these results show that the bacterial populations in Tatsoi and in its ecosystem are highly diverse based on the cultivation system. PMID:27070460

  15. Host-parasite interactions in closed and open microbial cultivation system

    Science.gov (United States)

    Pisman, T. I.; Pechurkin, N. S.

    We studied interaction between bacteria and phages within a host-parasite system the members of the system being continuously and closely cultivated The objects of our research were auxotrophic strain Brevibacterium 22L and bacteriophage Brevibacterium sp strain A discovered in the soil of the Soviet Union Republic of Latvia using enrichment method 1 Closed system We investigated the dependence of bacteriolysis time upon the multiplicity of phage infection It was shown that reduction of phage amount by one bacterium leads to increase of marked lysis Another important factor determining cytolysis in fluid medium is the physiological state of bacterial population Specific growth rate of bacteria at the moment of phage infection was chosen as the index of the physiological state of bacteria It was revealed that the shortest latent period and the maximal phage burst is observed when the bacteria located in a favorable nutrient medium are in the logarithmic phase If the bacterial population has already passed from the logarithmic phase to the stationary one the cells become a bad host for phage reproduction and lysis occurs very slowly or even never starts at all 2 Open system In the process of continuous cultivation the members of the host-parasite system showed an ability to coexist over a long period of time After phage infection there were variations in the size of both populations and then the density of the host population reached the level close to that of the uninfected culture In this situation the phage population

  16. Indicator For Pseudomonas Bacteria

    Science.gov (United States)

    Margalit, Ruth

    1990-01-01

    Characteristic protein extracted and detected. Natural protein marker found in Pseudomonas bacteria. Azurin, protein containing copper readily extracted, purified, and used to prepare antibodies. Possible to develop simple, fast, and accurate test for marker carried out in doctor's office.

  17. Changes in Organic, Inorganic contents, Carbon Nitrogen ratio in decomposing Avicennia marina and Rhizophora mucronata leaves on tidal mudf lats in Hajambro creek, Indus delta, Pakistan

    Directory of Open Access Journals (Sweden)

    Zafar Farooqui

    2014-01-01

    Full Text Available Leaf decomposition of Avicennia marina (Forskal Vierh in Denkschr and Rhizophora mucronata (Poiret was studied in situ using litterbag s in Hajambro creek, Indus delta. A single exponential model was presented, which best described the rate of decomposition for both the species. The rate of decomposition was species specific, A. marina leaves decomposed slower than the R. mucronata (p<0.001. The time in days required for 50% loss of the initial dry mass (t1/2 was 49.55 days for the A. marina and 44.43 days in case of R. mucronata. The organic content in the leaves was high initially but decresed gradually during decomposition, which is negatively correlated with inorganic contents. This study will help in the management and conservation of mangrove ecosystem of Hajambro creek, Indus delta, Pakistan.

  18. Alternative substrates for higher mushrooms mycelia cultivation

    OpenAIRE

    TETIANA KRUPODOROVA; VICTOR BARSHTEYN

    2015-01-01

    Cultivation of 29 species of higher mushroom mycelia on alternative substrates – wastes of Ukrainian oil-fat industry, has been investigated. The amount of mushroom mycelia obtaining on 12 investigated substrates varied significantly, from 1.0 g/L to 22.9 g/L on the 14th day of cultivation. The superficial cultivation adopted in this study allows for easy to choose appropriate medium (substrate) for mycelia production. Alternative substrates (compared to glucose-peptone-yeast medium) were sel...

  19. Isolation and Characterisation of Diazotrophic Bacteria from Rhizosphere of Different Rice Cultivars of South Assam, India

    OpenAIRE

    FOLGUNI LASKAR; Sharma, G. D.

    2013-01-01

    Free living heterotrophic bacteria were isolated from the rhizosphere of 10 local and cultivated varieties of rice grown in Karimganj district of South Assam. Among the 25 isolates, 11 isolates withplant growth promoting activity were identified based on phenotypic and 16S rDNA sequence analysis. The strains were identified as Shingomonasazotifigens, Pseudomonas putida, Stenotrophomonasmaltophila,Acinetobacterradioresistance, Alkaligenesfaecalis, Enterobactercloaceae subsp. dissolvens, Pant...

  20. Aerial root adaptations of Rhizophora apiculata Bl. and Avicennia marina Vierh. to the changes of water levels

    Directory of Open Access Journals (Sweden)

    Bamroongrugsa, N.

    2005-07-01

    Full Text Available Aerial root adaptations of Rhizophora apiculata Bl. and Avicennia marina Vierh. as related to the changes of water levels were carried out on abandoned shrimp ponds of Prince of Songkla University, Pattani Campus, in four water level study plots; 10 cm below soil surface, soil surface level, 10 and 20 cm above soil surface. The results revealed that survival rates of two species were 100 percent in all treatments. Growth of R. apiculata were high in three levels of flooding: soil surface level, 10 and 20 cm above soil surface in the 4th and 8th month. In one year growth of R. apiculata grown in four level of water were slightly different (height: 10 cm below soil surface = 101.35 cm, soil surface level = 108.55 cm, 10 cm above soil surface = 102.20 cm and 20 cm above soil surface = 90.24 cm. The growth of A. marina was highest in 10 cm below soil surface (height = 196.78 cm and growth was high in soil surface level and 10 cm above soil surface (height = 183.66 and 158.53 cm, respectively. The lowest growth was found in 20 cm above soil surface (height = 122.65 cm.. The stilt root of R. apiculata showed good development in two levels of flooding: soil surface level and 10 cm above soil surface, except in circumference of prop root which was biggest in the 20 cm above soil surface. The pneumatophores of A. marina had good development in three water levels: 10 cm below soil surface, soil surface level and 10 cm above soil surface, except in height which was low in 10 cm below soil surface and high in 10 and 20 cm above soil surface. The results of this investigation showed be successfully applied for two mangroves planting and restoration.

  1. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina.

    Directory of Open Access Journals (Sweden)

    Stacey DeAmicis

    Full Text Available Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide

  2. The impact of lactic acid bacteria on sourdough fermentation

    Directory of Open Access Journals (Sweden)

    Savić Dragiša S.

    2005-01-01

    Full Text Available The baking of sourdough breads represents one of the oldest biotechnological processes. Despite traditionality, sourdough bread has great potential because of its benefits. Sourdough is a mixture of flour and water that is dominated by a complex microflora composed of yeasts and lactic acid bacteria that are crucial in the preparation of bread dough. Lactic acid bacteria cause acidification by producing lactic acid that increases the shelf life of bread by preventing the growth of undesirable microorganisms and affects the nutritional value of bread by increasing the availability of minerals. In addition to these advantages, the use of sourdough fermentation also improves dough machinability, breadcrumb structure and the characteristic flavour of bread. Lactic acid bacteria in sourdough fermentation are well known representing both homofermentative and heterofermentative bacteria. They may originate from selected natural contaminants in the flour or from a starter culture containing one or more known species of lactic acid bacteria. Sourdough can be cultivated in bakeries or obtained from commercial suppliers. However, many bakeries in Europe still use spontaneously fermented sourdoughs, which have been kept metabolically active for decades by the addition of flour and water at regular intervals. The impact of lactic acid bacteria on sourdough fermentation and their influence on dough and bread quality was discussed on the basis of research and literature data.

  3. Deterioration of eelgrass, Zostera marina L., meadows by water pollution in Seto Inland Sea, Japan

    Energy Technology Data Exchange (ETDEWEB)

    Tamaki, Hitoshi; Tokuoka, Makoto; Nishijima, Wataru; Terawaki, Toshinobu; Okada, Mitsumasa

    2002-11-01

    Survival of transplanted Zostera marina L. (eelgrass) and environmental conditions (water quality, bottom sediments, sedimentation on leaves and flow regime) were studied concurrently in the center, edge, and at the outside of a eelgrass meadow located in a eutrophic coastal zone in northern Hiroshima Bay, Seto Inland Sea, Japan. Eelgrass transplants at the outside of the meadow declined significantly, whereas those at the center were consistently well established. Silt content in the bottom sediments at the outside was higher than that at the center. The sediment was oxic from the surface to 2 cm deep at the center, whereas those at the edge and the outside were reductive almost from the surface. The sediment characteristics typical in eutrophic water seemed to be a factor responsible for the deterioration of eelgrass meadows. Although suspended solid concentrations in the water columns were almost the same, the amount of sediments deposited on leaves of eelgrass at the outside was higher than that at the center of the meadow. The amount of the deposition at the outside seems to be enough to inhibit photosynthesis; i.e. photosynthetic photon flux density (PPFD) available for eelgrass was only 36% of that without any deposition. The deposition in the center, however, was small enough to allow 84% of the original PPFD. Flow rates, determined at 30 cm above the bottom, a half height of average eelgrass, suggested that the rate at the outside was not enough to remove deposited sediments from the surface of eelgrass leaves. Thus, the large amount of sediment deposition caused by water pollution and/or eutrophication seemed to be another factor to inhibit the survival of eelgrass at the outside edge of the meadow.

  4. Deterioration of eelgrass, Zostera marina L., meadows by water pollution in Seto Inland Sea, Japan

    International Nuclear Information System (INIS)

    Survival of transplanted Zostera marina L. (eelgrass) and environmental conditions (water quality, bottom sediments, sedimentation on leaves and flow regime) were studied concurrently in the center, edge, and at the outside of a eelgrass meadow located in a eutrophic coastal zone in northern Hiroshima Bay, Seto Inland Sea, Japan. Eelgrass transplants at the outside of the meadow declined significantly, whereas those at the center were consistently well established. Silt content in the bottom sediments at the outside was higher than that at the center. The sediment was oxic from the surface to 2 cm deep at the center, whereas those at the edge and the outside were reductive almost from the surface. The sediment characteristics typical in eutrophic water seemed to be a factor responsible for the deterioration of eelgrass meadows. Although suspended solid concentrations in the water columns were almost the same, the amount of sediments deposited on leaves of eelgrass at the outside was higher than that at the center of the meadow. The amount of the deposition at the outside seems to be enough to inhibit photosynthesis; i.e. photosynthetic photon flux density (PPFD) available for eelgrass was only 36% of that without any deposition. The deposition in the center, however, was small enough to allow 84% of the original PPFD. Flow rates, determined at 30 cm above the bottom, a half height of average eelgrass, suggested that the rate at the outside was not enough to remove deposited sediments from the surface of eelgrass leaves. Thus, the large amount of sediment deposition caused by water pollution and/or eutrophication seemed to be another factor to inhibit the survival of eelgrass at the outside edge of the meadow

  5. On the profile evolution of three artificial pebble beaches at Marina di Pisa, Italy

    Science.gov (United States)

    Bertoni, Duccio; Sarti, Giovanni

    2011-07-01

    In this paper, the profiles of three artificial coarse-grained beaches located at Marina di Pisa (Tuscany, Italy) were monitored from April 2008 to May 2009 in order to define the response of the beaches to major storms that occurred during the study. Two beaches are similar, the third differs in length and in the level of protection, being less than half the length of the others and devoid of an offshore submerged breakwater. The work was achieved by means of accurate topographic surveys intended to reconstruct the beach profile from the backshore up to the foreshore-upper shoreface transition (step). The surveys were performed with an RTK-GPS instrument, which provided extremely precise recording of the beach. The most significant features of the beaches were tracked during each survey; in particular, the landward foot of the storm berm, the crest of the storm berm, the coastline, and the step crest were monitored. Five cross-shore transects were traced on each beach. Along these transects, any meaningful slope change was recorded to obtain accurate sections of the beach. The field datasets were processed with AutoCAD software to compare the beach profile evolution during the year-long research. The results showed a comparable evolution of the twin beaches: the resulting storm berm retreat of about 15 to 19 m is a remarkable feature considering the coarse grain size and the offshore protection. Due to the absence of the breakwater, the third beach was characterized by even higher values of recession (over 20 m), and showed hints of wave reflection-related processes after the huge, steep storm berm had been formed and grown after the high energy events. These processes were not as evident on the twin beaches. These results underline the different response of three similar protection schemes, and the importance that frequent monitoring of the beach morphology holds when it comes to coastal management issues.

  6. Biocalcarenites as construction materials in Santa Marina de Aguas Santas Church at Cordoba, Spain

    Directory of Open Access Journals (Sweden)

    Meroño, J. E.

    2009-03-01

    Full Text Available This study consisted in characterizing the materials used to build Santa Marina de Aguas Santas Church at Cordoba and locating the original quarries. The techniques used in the lithological and chemical characterization included XRD, petrographic microscopy and electron dispersive scanning microscopy. The chemical index of weathering (CIW was used to quantify the state of stone decay. The lithology and different types of alterations observed were mapped. A comparison of the material on the building to ancient quarries identified “Naranjo” as the possible site where the stone was originally quarried.Para la caracterización litológica y determinación del grado de alteración de los materiales pétreos se han empleado las siguientes técnicas: difracción de rayos X (método del polvo, microscopía petrográfica (sobre lámina delgada y microscopía de barrido con EDS (energía dispersiva de rayos X, para determinar la composición química. El estado de degradación del material pétreo se ha cuantificado a partir del índice químico de alteración (CIW. Se han realizado cartografías sobre la fachada oeste: a de las litologías presentes y b de los diferentes tipos de alteración observados. La comparación de muestras del edificio con las de antiguas canteras ha permitido identificar la del Naranjo como la posible cantera de origen.

  7. Evidence of additional excitation energy transfer pathways in the phycobiliprotein antenna system of Acaryochloris marina.

    Science.gov (United States)

    Nganou, A C; David, L; Adir, N; Pouhe, D; Deen, M J; Mkandawire, M

    2015-02-01

    To improve the energy conversion efficiency of solar organic cells, the clue may lie in the development of devices inspired by an efficient light harvesting mechanism of some aquatic photosynthetic microorganisms that are adapted to low light intensity. Consequently, we investigated the pathways of excitation energy transfer (EET) from successive light harvesting pigments to the low energy level inside the phycobiliprotein antenna system of Acaryochloris marina, a cyanobacterium, using a time resolved absorption difference spectroscopy with a resolution time of 200 fs. The objective was to understand the actual biochemical process and pathways that determine the EET mechanism. Anisotropy of the EET pathway was calculated from the absorption change trace in order to determine the contribution of excitonic coupling. The results reveal a new electron energy relaxation pathway of 14 ps inside the phycocyanin component, which runs from phycocyanin to the terminal emitter. The bleaching of the 660 nm band suggests a broader absorption of the terminal emitter between 660 nm and 675 nm. Further, there are trimer depolarization kinetics of 450 fs and 500 fs in high and low ionic strength, respectively, which arise from the relaxation of the β84 and α84 in adjacent monomers of phycocyanin. Under conditions of low ionic strength buffer solution, the evolution of the kinetic amplitude during the depolarization of the trimer is suggestive of trimer conservation within the phycocyanin hexamer. The anisotropy values were 0.38 and 0.40 in high and in low ionic strength, respectively, indicating that there is no excitonic delocalization in the high energy level of phycocyanin hexamers. PMID:25470281

  8. Zooshikella marina sp. nov. a cycloprodigiosin- and prodigiosin-producing marine bacterium isolated from beach sand.

    Science.gov (United States)

    Ramaprasad, E V V; Bharti, Dave; Sasikala, Ch; Ramana, Ch V

    2015-12-01

    A red-pigmented bacterium producing a metallic green sheen, designated strain JC333T, was isolated from a sand sample collected from Shivrajpur-Kachigad beach, Gujarat, India. Phylogenetic analyses based on the 16S rRNA gene sequence of strain JC333T showed highest sequence similarity to Zooshikella ganghwensis JC2044T (99.24 %) and less than 91.94 % similarity with other members of the class Gammaproteobacteria. DNA-DNA hybridizations between JC333T and Z. ganghwensis JC2044T showed low relatedness values of 19 ± 1.3 % (reciprocal 21 ± 2.2 %). The major respiratory quinone was ubiquinone-9 (Q9) and the polar lipid profile was composed of the major components diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified lipid. The presence of C16 : 1ω7c/C16 : 1ω6c, C16 : 0, C18 : 1ω7c and C12 : 0 as major fatty acids supported the affiliation of strain JC333T to the genus Zooshikella. Prodigiosin, cycloprodigiosin and eight other prodigiosin analogues were the pigments of JC333T. Characterization based on 16S rRNA gene sequence analysis, physiological parameters, pigment analysis, ubiquinone, and polar lipid and fatty acid compositions revealed that JC333T represents a novel species of the genus Zooshikella, for which the name Zooshikella marina sp. nov. is proposed. The type strain is JC333T ( = KCTC 42659T = LMG 28823T). PMID:26409875

  9. Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs.

    Science.gov (United States)

    Wissler, L; Dattolo, E; Moore, A D; Reusch, T B H; Olsen, J L; Migliaccio, M; Bornberg-Bauer, E; Procaccini, G

    2009-01-01

    As ecosystem engineers, seagrasses are angiosperms of paramount ecological importance in shallow shoreline habitats around the globe. Furthermore, the ancestors of independent seagrass lineages have secondarily returned into the sea in separate, independent evolutionary events. Thus, understanding the molecular adaptation of this clade not only makes significant contributions to the field of ecology, but also to principles of parallel evolution as well. With the use of Dr. Zompo, the first interactive seagrass sequence database presented here, new insights into the molecular adaptation of marine environments can be inferred. The database is based on a total of 14 597 ESTs obtained from two seagrass species, Zostera marina and Posidonia oceanica, which have been processed, assembled and comprehensively annotated. Dr. Zompo provides experimentalists with a broad foundation to build experiments and consider challenges associated with the investigation of this class of non-domesticated monocotyledon systems. Our database, based on the Ruby on Rails framework, is rich in features including the retrieval of experimentally determined heat-responsive transcripts, mining for molecular markers (SSRs and SNPs), and weighted key word searches that allow access to annotation gathered on several levels including Pfam domains, GeneOntology and KEGG pathways. Well established plant genome sites such as The Arabidopsis Information Resource (TAIR) and the Rice Genome Annotation Project are interfaced by Dr. Zompo. With this project, we have initialized a valuable resource for plant biologists in general and the seagrass community in particular. The database is expected to grow together with more data to come in the near future, particularly with the recent initiation of the Zostera genome sequencing project.The Dr. Zompo database is available at http://drzompo.uni-muenster.de/ PMID:20157482

  10. Niveles de plomo y cadmio en agua marina y lapas (Patella vulgata L.) de la Ría de Vigo

    OpenAIRE

    Pérez López, M.; M.C Nóvoa; J. Alonso; M. A. García Fernández; M.J. Melgar

    2003-01-01

    El empleo de seres vivos para monitorizar la contaminación por metales pesados en los ecosistemas acuáticos es de extremo interés en el campo de la ecotoxicología. En el presente estudio se han recogido muestras de agua marina y de lapas (Patella vulgata L.) de distintos puntos de la Ría de Vigo, con la intención de determinar en ellos los niveles de plomo y cadmio, por medio de una técnica de voltamperometría. Los resultados obtenidos mostraron una relación estrecha entr...

  11. A reescrita de mitos femininos na obra de Marina Warner : metamorfose, género e identidade

    OpenAIRE

    Santos, Lucília Ramos dos

    2011-01-01

    Dissertação de mestrado em Estudos Ingleses O trabalho de Marina Warner é marcado pelo imperativo pós-moderno do “eternal return”, associado ao processo de recontar e de reescrita, por forma a criar um universo narrativo aberto à renovação e instabilidade ilimitadas. A linguagem mítica, com a sua fluidez e flexibilidade, mais a sua relevância na construção e desconstrução da realidade, pode ser considerada um recurso eficaz no processo de reescrita, na metamorfose de um mund...

  12. Línea base de conocimiento sobre el estado actual de las tortugas marinas en el Ecuador

    OpenAIRE

    Coello, Dialhy; Herrera, Marco

    2011-01-01

    Como respuesta a la solicitud formulada por La Comisión Permanente del Pacífico Sur a los Puntos Focales Nacionales para desarrollar Consultorías sobre de tortugas marinas en los países del Pacífico Sudeste, el Instituto Nacional de Pesca de Ecuador fue seleccionado para realizar una consultoría nacional con el objetivo establecer una línea base del conocimiento del estado actual de las tortugas en el Ecuador. Entre los principales resultados obtenidos tenemos que el conocimiento sobre las...

  13. Two-dimensional electrophoresis of Arenicola marina extracellular hemoglobin: separation of chains with identical molecular mass but different isoelectric point.

    Science.gov (United States)

    Slitine, F E; Toulmond, A

    1991-01-01

    1. On the basis of their molecular masses, four types of polypeptides (A, B, C, D) were obtained by SDS-PAGE of the extracellular hemoglobin of the polychaete annelid Arenicola marina. 2. On 2-dimensional polyacrylamide gel electrophoresis, the erythrocruorin dissociated into six different types of polypeptide chains; A1, A2, B1, B2, C and D. 3. A1 and B1 migrate in 2-dimensional electrophoresis at the same position as alpha and beta chains of human hemoglobin. PMID:1814687

  14. Toads on Lava: Spatial Ecology and Habitat Use of Invasive Cane Toads (Rhinella marina) in Hawai’i

    OpenAIRE

    Georgia Ward-Fear; Greenlees, Matthew J.; Richard Shine

    2016-01-01

    Most ecological research on cane toads (Rhinella marina) has focused on invasive populations in Australia, ignoring other areas where toads have been introduced. We radio-tracked and spool-tracked 40 toads, from four populations on the island of Hawai'i. Toads moved extensively at night (mean 116 m, from spool-tracking) but returned to the same or a nearby retreat-site each day (from radio-tracking, mean distance between successive retreat sites 11 m; 0 m for 70% of records). Males followed s...

  15. Actividad antinociceptiva, anti-inflamatoria y relajante muscular de (+)-curcufenol aislado de la esponja marina didiscus oxeata

    OpenAIRE

    Salama, Ahmed; Toscano, Mariela; Del Valle, Martha; Vargas, Erika

    2008-01-01

    Mediante el método de edema plantar inducido por carragenina en la pata de la rata, (+)-curcufenol aislado de la esponja marina Didiscus oxeata mostró una actividad antiinflamatoria moderada, en las dosis de 100, 150 y 200 mg/kg administradas por vía oral, mientras que la actividad antinociceptiva fue confirmada por el método de contorsiones inducidas por ácido acético en ratones mostrando un efecto analgésico muy alto, en las dosis de 50, 100, 150 y 200 mg/kg administradas por vía oral, en c...

  16. High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine

    Directory of Open Access Journals (Sweden)

    Daniel B.A. Castro

    2015-09-01

    Full Text Available An actinobacterial strain, designated SO9-6, was isolated from a copper iron sulfide mineral. The organism is Gram-positive, facultatively anaerobic, and coccoid. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Kocuria. Here, we report the first draft genome sequence of Kocuria marina SO9-6 under accession JROM00000000 (http://www.ncbi.nlm.nih.gov/nuccore/725823918, which provides insights for heavy metal bioremediation and production of compounds of biotechnological interest.

  17. Plant Growth Promoting of Endophytic Sporosarcina aquimarina SjAM16103 Isolated from the Pneumatophores of Avicennia marina L.

    OpenAIRE

    S. Rylo Sona Janarthine; Eganathan, P.

    2012-01-01

    Endophytic Sporosarcina aquimarina SjAM16103 was isolated from the inner tissues of pneumatophores of mangrove plant Avicennia marina along with Bacillus sp. and Enterobacter sp. Endophytic S. aquimarina SjAM16103 was Gram variable, and motile bacterium measured 0.6–0.9  μ m wide by 1.7–2.0  μ m long and light orange-brown coloured in 3-day cultures on tryptone broth at 26°C. Nucleotide sequence of this strain has been deposited in the GenBank under accession number GU930359. This endophytic ...

  18. Migración de las aves marinas por el Cabo de Higer. Otoño 1984.

    OpenAIRE

    RIOFRIO, J., BELZUNCE, J.A., CANOSA, P.

    1988-01-01

    Se ha estudiado la migración visible de las aves marinas por el   cabo de Higer durante el otoño de 1984 analizando la migración a   lo largo del día y a lo largo del período estudiado. De las 34   especies registradas durante el trabajo de campo se han analizado   12, aquellas que poseen un nivel de presencia suficiente, así   como la cantidad total de migrantes. Excepto P. carbo y S. sandvicensis, todas las demás especies   analizadas concentran durante la primera mitad...

  19. Alternativa de biofertilizante como medio de cultivo para el crecimiento poblacional de dos microalgas marinas empleadas en la camaronicultura

    OpenAIRE

    Guerra Aznay, M.; Pérez Jar, L.; Leal Lorenzo, S.; Jaime Ceballos, B.; Jiménez Cabrera, R.; Pérez Díaz, S.; Bobadilla González, J.

    2012-01-01

    Con el propósito de evaluar el humus de lombriz roja californiana Eisenia foetida como biofertilizante para el crecimiento poblacional de dos microalgas marinas, fueron cultivadas Tetraselmis tetrathele y Chaetoceros muelleri en agua de mar enriquecida con cuatro diluciones (50; 200; 350 y 500 mL) de extracto líquido de humus. La especie T. tetrathele, cultivada en la dilución de 200 mL, no mostró diferencias con el patrón medio f/2 Guillard para los parámetros: concentración celu...

  20. Composición quimica y actividad antifouling de la fraccion lipidica de la esponja marina cliona tenuis (clionidae)

    OpenAIRE

    Leonardo Castellanos; Carmenza Duque

    2009-01-01

    Del extracto orgánico de la esponja marina Cliona tenuis, recolectada en las Islas del Rosario (Colombia, Mar Caribe), fue obtenida la fracción lipídica, la cual presentó propiedades antifouling en pruebas en campo. Esta fracción fue separada por CC sobre gel de sílice hasta obtener fracciones de ésteres metílicos, glicéridos, glicolípidos, fosfolípidos y ácidos grasos libres, las cuales fueron identificadas por CCD y técnicas de dereplicación (RMN 1H y 13C). Posteriormente, las fracciones ...

  1. Linking Arenicola marina irrigation behavior to oxygen transport and dynamics in sandy sediments

    DEFF Research Database (Denmark)

    Timmermann, Karen; Banta, Gary T.; Glud, Ronnie Nøhr

    2007-01-01

    In this study we examine how the irrigation behavior of the common lugworm Arenicola marina affects the distribution, transport and dynamics of oxygen in sediments using microelectrodes, planar optodes and diagenetic modeling. The irrigation pattern was characterized by a regular recurring periods...... of active irrigation lasting approximately 15 min separated by a 15 min rest period. The mean pumping rate during irrigation was 52 ml h-1. Oxygen dynamics and distribution around the tail shaft was closely related to irrigation pattern but independent of pumping rate. During irrigation the oxygen...

  2. Contaminación marina en las bahías de Paita y Talara en setiembre 1996.

    OpenAIRE

    Enriquéz, Edgardo; Orozco, Rita; Castillo, Sonia; Fernández, Elizabeth; Morón, Octavio

    1999-01-01

    Informe que muestra los estudios de los efectos de la contaminación marina sobre el macrozoobentos de fondo blando de aguas someras. Ademas se evaluó la calidad microbiológica y la demanda bioquimica de oxigeno (DBO) en agua de mar y a nivel de playas. Se determinó que el agua de mar no presenta contaminación microbiológica según los resultados de coliformes totales y fecales. Sin embargo, a nivel de playas en la bahía de Paita, se detectaron dos áreas afectadas por altos niveles de colifo...

  3. High cell density cultivation of the chemolithoautotrophic bacterium Nitrosomonas europaea.

    Science.gov (United States)

    Papp, Benedek; Török, Tibor; Sándor, Erzsébet; Fekete, Erzsébet; Flipphi, Michel; Karaffa, Levente

    2016-05-01

    Nitrosomonas europaea is a chemolithoautotrophic nitrifier, a gram-negative bacterium that can obtain all energy required for growth from the oxidation of ammonia to nitrite, and this may be beneficial for various biotechnological and environmental applications. However, compared to other bacteria, growth of ammonia oxidizing bacteria is very slow. A prerequisite to produce high cell density N. europaea cultures is to minimize the concentrations of inhibitory metabolic by-products. During growth on ammonia nitrite accumulates, as a consequence, N. europaea cannot grow to high cell concentrations under conventional batch conditions. Here, we show that single-vessel dialysis membrane bioreactors can be used to obtain substantially increased N. europaea biomasses and substantially reduced nitrite levels in media initially containing high amounts of the substrate. Dialysis membrane bioreactor fermentations were run in batch as well as in continuous mode. Growth was monitored with cell concentration determinations, by assessing dry cell mass and by monitoring ammonium consumption as well as nitrite formation. In addition, metabolic activity was probed with in vivo acridine orange staining. Under continuous substrate feed, the maximal cell concentration (2.79 × 10(12)/L) and maximal dry cell mass (0.895 g/L) achieved more than doubled the highest values reported for N. europaea cultivations to date. PMID:26358065

  4. Diseño de una metodología para la gestión sostenible de los recursos en áreas marinas protegidas

    OpenAIRE

    Garcia Aranda, Cesar; Molina Garcia, Agustin; Gonzalez San Martin, M. Blanca

    2010-01-01

    La nueva Política Marina Integrada de la Unión Europea (UE) tiene como objetivo general la optimización y sostenibilidad de la explotación del mar. En este contexto, la figura de las Áreas Marinas Protegidas (AMPs) se plantea como un valioso instrumento para avanzar en la ordenación y gestión sostenible de los recursos marinos, permitiendo una gran variedad de alternativas en función del objetivo de conservación, el nivel de protección y las diferentes posibilidades de aprovechamiento de...

  5. Revisión crítica de los estudios sobre biogeografía de macroalgas marinas del Mediterráneo.

    OpenAIRE

    Vargas, J. M.; Real, Raimundo; Flores-Moya, Antonio; Báez, José C.

    2004-01-01

    Revisión crítica de los estudios sobre biogeografía de macroalgas marinas del Mediterráneo. Teniendo en cuenta los procedimientos metodológicos que se siguen en los estudios biogeográficos, se reconocen tres tipos básicos de aproximaciones: biogeografía descriptiva, biogeografía narrativa y biogeografía analítica. En este trabajo se analizan las aportaciones realizadas a la ficogeografía de las macroalgas marinas del mar Mediterráneo, atendiendo a cada una de las tres aproximaciones posibles....

  6. El trabajo en la marina mercante española en la transición de la vela al vapor (1834-1914)

    OpenAIRE

    Garcia i Domingo, Enric, 1962-

    2013-01-01

    El objeto de estudio es la Marina mercante española (en concreto las tripulaciones) durante la transición de la vela al vapor. El marco cronológico se sitúa entre 1834 (primera línea regular estable con buques de vapor) y 1914 (cuando el proceso de mecanización ya se puede dar por acabado). Aunque con referencias a un marco internacional más amplio, se analiza el caso español focalizando en la marina catalana porque durante el proceso el centro de gravedad de las actividades marítimas estaba ...

  7. Cultivable microflora and endo mycorrhizas obtained in litter forest (Paramo Guerrero - Finca Puente de Tierra) Zipaquira, Colombia

    International Nuclear Information System (INIS)

    The count of cultivable microorganisms (bacteria and fungi), cellulolytic microorganisms and endo mycorrhizas present in litter forest (property Puente de Tierra) in the Guerrero's moor, Colombia was made. The most frequently isolated microorganisms belonged to the staphylococcus, bacillus, pseudomonas, micrococcus, penicillium and rhodotorulagenus and cladosporium sp., which is a cellulolytic microorganism, was isolated in carboxymethyl cellulose agar. In addition eight morphotypes of endomycorrhizas were found, species of glomus and acaulospora predominated among them. This study contributes with the knowledge of the cultivable microorganisms of litter that have been little explored in moor ecosystems

  8. How to Cultivate the Student's Cultural Awareness

    Institute of Scientific and Technical Information of China (English)

    tian xiu ying

    2008-01-01

    Language and culture are inseparable and cultural awareness must be integrated with language teaching. How to cultivate the learners' cultural awareness is an important issue that we have to carry out in teaching practice in China.

  9. Soilless cultivation system for functional food crops

    International Nuclear Information System (INIS)

    This soilless cultivation system is based on the fertigation system and cultivation technologies using Functional Plant Cultivation System (FPCS). EBARA Japan has been studying on the cultivation conditions in order to enhance the function of decease risk reduction in plants. Through the research and development activities, EBARA found the possibilities on the enhancement of functions. Quality and quantity of the products in term of bioactive compounds present in the plants may be affected by unforeseen environmental conditions, such as temperature, strong light and UV radiation. The main objective to develop this system is, to support? Functional Food Industry? as newly emerging field in agriculture business. To success the system, needs comprehensive applying agriculture biotechnologies, health biotechnologies and also information technologies, in agriculture. By this system, production of valuable bioactive compounds is an advantage, because the market size of functional food is increasing more and more in the future. (Author)

  10. Prospect of Tea Cultivation & Processing in Pakistan

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    HistoryIn 1958, a farmer brought some tea seeds and plants from Bangladesh (then east Pakistan), and successfully cultivated them in district Mansehra. At that time, Pakistan was self-sufficient in tea that was produced in East Pakistan. After the separation (in 1971) of East Pakistan, Pakistan diverted attention to initial work on tea production. The Pakistan Agricultural Research Council (PARC) took over the charge of tea cultivation in 1976-77 and launched a project in 1980.

  11. ECONOMICS OF COTTON CULTIVATION IN GUJARAT

    OpenAIRE

    Vijaysinh Dhandhukiya

    2013-01-01

    Cotton is a part of our daily lives from the time, we dry our faces on a soft cotton towel in the morning till we slide between fresh cotton sheets at night. It has hundreds of uses. Cotton is vital textile raw material, has an important role in the industry and trade of both, own country and the world with various areas for usage. This paper focuses on the growth economics of cotton cultivation in Gujarat. Key words: economics, cotton, cotton cultivation

  12. Advancing gut microbiome research using cultivation

    DEFF Research Database (Denmark)

    Sommer, Morten OA

    2015-01-01

    Culture-independent approaches have driven the field of microbiome research and illuminated intricate relationships between the gut microbiota and human health. However, definitively associating phenotypes to specific strains or elucidating physiological interactions is challenging for metagenomic...... approaches. Recently a number of new approaches to gut microbiota cultivation have emerged through the integration of high-throughput phylogenetic mapping and new simplified cultivation methods. These methodologies are described along with their potential use within microbiome research. Deployment of novel...

  13. Partition, migration, and jute cultivation in India

    OpenAIRE

    Bharadwaj, Prashant; Fenske, James

    2012-01-01

    Climate change is expected to displace millions of involuntary migrants in Bangladesh. We draw on history to show that these ``environmental refugees'' can play a positive role in the regions that receive them by looking at the partition of India. We use an instrumental variables (IV) strategy to show that the migrants played a major role in India's take-up of jute cultivation. Our estimates suggest that migrants fully explain post-Partition jute cultivation. Consistent with migrants bring...

  14. Zeolites as possible biofortifiers in Maitake cultivation

    OpenAIRE

    Vunduk Jovana; Klaus Anita; Kozarski Maja; Đorđević R.; Jovanović Lj.; Nikšić M.

    2014-01-01

    The levels of Ni, Cu and Mg in Grifola frondosa (also known as Maitake mushroom) fruit body produced on zeolite Minazel Plus (MG)-supplemented substrate were measured with inductively coupled plasma optical emission spectrometry (ICP-OES). Two different concentrations of MG were added to the substrate for mushroom cultivation. Levels of selected metals were measured in cultivated dry carpophores. The content of Ni increased in fruit bodies produced on suppl...

  15. Modern, sustainable, protected greenhouse cultivation in Algeria

    OpenAIRE

    Os, van, H.; Speetjens, S.L.; Ruijs, M.N.A.; Bruins, M.A.; Sapounas, A.

    2012-01-01

    The goal of the project was to analyse the structure and technology level of protected cultivation in Algeria, which were followed by recommendations for improvements (technical, cultivation and economic aspects) of existing and newly built greenhouses. Further, in discussion with Dutch and Algerian parties, the goal was to come to a final design which can be built with local partners. The Wageningen UR “adaptive greenhouse approach” was used at which results of the simulation models for the ...

  16. The problem of causality in cultivation research

    OpenAIRE

    Rossmann, Constanze; Brosius, Hans-Bernd

    2004-01-01

    This paper offers an up-to-date review of problems in determining causal relationships in cultivation research, and considers the research rationales of various approaches with special reference to causal interpretation. It describes in turn a number of methodologies for addressing the problem and resolving it as far as this is possible. The issue of causal inference arises not only in cultivation research, however, but is basic to all media effects theories and approaches primarily at the ma...

  17. Prospects for Sorghum cultivation in Poland

    OpenAIRE

    Roman Prażak

    2016-01-01

    The article presents the origin and cultivation history of sorghum (Sorghum spp.), its biology, requirements, cultivation techniques, and utilization. Sorghum is a cereal of the Poaceae. It is one of the most important crop plants grown in warmer parts of the world. Sorghum comes from Africa and therefore has very high heat requirements. In comparison with other crop plants, it is characterized by more efficient nutrient and water utilization. Sorghum grain is used to produce porridge, flour,...

  18. Pensions for 'cultivators of science'.

    Science.gov (United States)

    Crosland, Maurice

    2010-10-01

    The occasional (and belated) concern of the British Government with science in the nineteenth century is a matter of potential interest to historians of science, yet many previous studies have tended to range over a variety of different aspects of the question. There have been too many vague allusions to financial support as 'money for science' in general. It is time that particular parts of the problem were unpacked. For example, the award of money (from the 1820s) to pay a few people of independent means for apparatus was quite distinct from the provision (from the 1830s) of an occasional pension. Even then, to speak of 'pensions' uncovers unfortunate ambiguities. For too long science in Britain was regarded as no more than a private hobby for the well-to-do. As late as 1856 an official government statement seemed to make this attitude official. The English attitude to pensions differed remarkably from the French, who established a precedent in the reward of savants, sometimes quoted enviously by British men of science. In 1837 Robert Peel virtually admitted that, in awarding pensions to 'cultivators of science', he was following the French practice. It may also be useful to emphasise the contrast between the English (often led by Cambridge professors) and the Scots, mostly from Edinburgh, mainly represented here by Whewell and Brewster, respectively. Babbage had a different role in this story from that usually told. A large part in supporting men of science of modest means could have been played by the British Association for the Advancement of Science but it consistently refused to do so, although it supported an elite among its own members. PMID:21466131

  19. Effects of shifting cultivation on biological and biochemical characteris-tics of soil microorganisms in Khagrachari hill district, Bangladesh

    Institute of Scientific and Technical Information of China (English)

    Sohag Miah; S.M. Sirajul Haque; Wahida Sumi; Mohammad Mosharraf Hossain

    2014-01-01

    We collected soil samples from two representative sites at Aatmile of Khagarachari hill district in Chittagong Hill Tracts. One of the sites was under shifting cultivation and the other an adjacent 13-year old teak plantation. Both sites were in the same physiographic condition and same aspect with parable soil type, which enabled us to measure the effects of shifting cultivation on soil micro-flora. We studied soil phys-ico-chemical properties and the biochemical and biological properties of soil microbes. Moisture and organic matter content as well as fungi and bacterial populations, both in surface and subsurface soils, were signifi-cantly (p≤0.001) lower in shifting cultivated soils compared to soils not under shifting cultivation, i.e. the teak plantation site. The most abundant bacteria in surface (0-10 cm) and sub-surface (10-20 cm) soils under shifting cultivation were Pseudomonas diminuta and Shigella, respec-tively, while in corresponding soil layers of teak plantation, predominant microbes were Bacillus firmus (0-10 cm) and Xanthomonas (10-20 cm). The microbial population differences cannot be explained by soil texture differences because of the textural similarity in soils from the two sites but could be related to the significantly lower moisture and organic mat-ter contents in soils under shifting cultivation.

  20. [The kinetic characteristics of mycelium growth of medicinal mushroom Ganoderma sinense in liquid-submerged cultivation].

    Science.gov (United States)

    Gong, Jianhua; Wang, Yijun

    2002-02-01

    The study was carried out to investigate the kinetic characteristics of Ganoderma sinense mycelium growth in liquid-submerged cultivation, using a air-lift bioreactor ALR/ff specially designed for the cultivation of mushrooms' suspending mycelia cultures. Mycelia of G. sinense grew in the range of 25 degrees C-35 degrees C, and at the different temperature in which the specific growth rate showed by the mycelia much differed. The specific growth rates with the maximum of 0.0444(h-1) at 1.64 vvm of aeration in the cultivation were more than at 0.93 vvm, also more than at 2.50 vvm. In comparison with the less glucose concentration, the culture of 2.80 g glucose/100 mL in the medium had a shorter lag-period, and the more concentration of glucose favoured mycelia growth in the latter cultivation course with the denser pellets of mycelia. Then the culture of the less concentration of glucose in the medium had the higher conversion-rates of glucose to G. sinense biomass all along the cultivation course, than of the more concentration of glucose. Futhermore, in the continuous cultivations with growth-limiting substrate of carbon source the mycelia displaying different growing activities, demonstrated the varied forms of mycelium-gathering. In that cases the relationships among mycelia biomass, growth-limiting substrate and productivity of mycelium biomass obviously differed from the ones in the case of bacteria. Also in the range of dilution rates 0.010-0.220 (h-1) the growing of G. sinense mycelia followed the function of Contois equation. PMID:12557355

  1. Classification and identification of pigmented cocci bacteria relevant to the soil environment via Raman spectroscopy.

    Science.gov (United States)

    Kumar, Vinay; Kampe, Bernd; Rösch, Petra; Popp, Jürgen

    2015-12-01

    A soil habitat consists of a significant number of bacteria that cannot be cultivated by conventional means, thereby posing obvious difficulties in their classification and identification. This difficulty necessitates the need for advanced techniques wherein a well-compiled biomolecular database consisting of the already cultivable bacteria can be used as a reference in an attempt to link the noncultivable bacteria to their closest phylogenetic groups. Raman spectroscopy has been successfully applied to taxonomic studies of many systems like bacteria, fungi, and plants relying on spectral differences contributed by the variation in their overall biomolecular composition. However, these spectral differences can be obscured due to Raman signatures from photosensitive microbial pigments like carotenoids that show enormous variation in signal intensity hindering taxonomic investigations. In this study, we have applied laser-induced photobleaching to expel the carotenoid signatures from pigmented cocci bacteria. Using this method, we have investigated 12 species of pigmented bacteria abundant in soil habitats belonging to three genera mainly Micrococcus, Deinococcus, and Kocuria based on their Raman spectra with the assistance of a chemometric tool known as the radial kernel support vector machine (SVM). Our results demonstrate the potential of Raman spectroscopy as a minimally invasive taxonomic tool to identify pigmented cocci soil bacteria at a single-cell level. PMID:25940486

  2. Monitoring of horizontal gene transfer from agricultural microorganisms to soil bacteria and analysis of microbial community in soils.

    Science.gov (United States)

    Kim, Sung Eun; Moon, Jae Sun; Choi, Won Sik; Lee, Sang Han; Kim, Sung Uk

    2012-04-01

    To investigate the possibility of horizontal gene transfer between agricultural microorganisms and soil microorganisms in the environment, Bacillus subtilis KB producing iturin and the PGPR recombinant strain Pseudomonas fluorescens MX1 were used as model microorganisms. The soil samples of cucumber or tomato plants cultivated in pots and the greenhouse for a six month period were investigated by PCR, real-time PCR, Southern hybridization, and terminal restriction fragment length polymorphism (T-RFLP) fingerprinting. Our data from Southern blotting and TRFLP patterns suggest that the model bacteria do not give significant impacts on the other bacteria in the pots and greenhouse during cultivation. PMID:22534306

  3. Oil eating bacteria

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2002-07-01

    The article discusses the unusual technology of using oil-eating bacteria to increase oil recovery. The background for the discovery that bacteria injection into the reservoirs may increase the oil recovery is the study of microbial action in breaking down oil pollution. About 20 per cent of the organisms living naturally in the sea can eat oil. But they need water to grow. In the absence of water, the bacteria produce enzymes to make the oil water soluble and allow them to extract nutrients from them. Oil does not vanish upon being eaten, but enzymes from the digestive process act as effective detergents to wash away the oil, which is then easier to recover.

  4. O tecer e o trajar: metáforas do empoderamento feminino em dois contos de Marina Colasanti

    Directory of Open Access Journals (Sweden)

    Enedir Silva Santos

    2015-12-01

    Full Text Available Os contos de Marina Colasanti transitam entre o real e o fantástico alinhavando ações que conduzem as relações humanas e seus dilemas. Suas narrativas curtas são retiradas das experiências diárias para suscitar reflexões muito mais abrangentes, pois são entrelaçados de palavras e situações que desvelam o cotidiano e o comportamento exigido da mulher. A partir da análise dos contos “A moça tecelã”, do livro Doze reis e a moça no labirinto do vento (1982, e “Plano matrimonial”, de Contos do amor rasgado (1982, evidenciamos de que forma a autora constrói, metaforicamente, na tessitura narrativa a roupa masculina e o trabalho da tecelã para refletir acerca do empoderamento da mulher. Os contos têm em comum a relação heterossexual das protagonistas intermediada pelos trajes masculinos, que se revestem de simbologia e revelam, no contexto literário, a explanação do lugar social da mulher e do homem, visto como uma das linhas que alinhavam a vivência humana. Desse modo, Marina Colasanti tece na trama discursiva as redes de significações reveladoras do fazer e do ser feminino.

  5. Survey of helminths, ectoparasites, and chytrid fungus of an introduced population of cane toads, Rhinella marina (Anura: Bufonidae), from Grenada

    Science.gov (United States)

    Drake, Michael C.; Zieger, Ulrike; Groszkowski, Andrew; Gallardo, Bruce; Sages, Patti; Reavis, Roslyn; Faircloth, Leslie; Jacobson, Krystin; Lonce, Nicholas; Pinckney, Rhonda D.; Cole, Rebecca Ann

    2014-01-01

    One hundred specimens of Rhinella marina, (Anura: Bufonidae) collected in St. George's parish, Grenada, from September 2010 to August 2011, were examined for the presence of ectoparasites and helminths. Ninety-five (95%) toads were parasitized by one or more parasite species. Nine species of parasites were found: 1 digenean, 2 acanthocephalans, 4 nematodes, 1 arthropod and 1 pentastome. The endoparasites represented 98.9% of the total number of parasite specimens collected. Grenada represents a new locality record for Mesocoelium monas, Raillietiella frenatus, Pseudoacanthacephalus sp., Aplectana sp., Physocephalus sp., Acanthacephala cystacanth and Physalopteridae larvae. The digenean M. monas occurred with the highest prevalence of 82%, contrasting many studies of R. marina where nematodes dominate the parasite infracommunity. Female toads were found to have a significantly higher prevalence of Amblyomma dissimile than male toads. Only two parasites exhibited a significant difference between wet and dry season with Parapharyngodon grenadensis prevalence highest in the wet season and A. dissimile prevalence highest during the dry season. Additionally, A. dissimile was significantly more abundant during the dry season.

  6. Micro-organic pollutants and biological response of mussels in marinas and ship building/breaking yards in Turkey.

    Science.gov (United States)

    Okay, O S; Karacık, B; Güngördü, A; Ozmen, M; Yılmaz, A; Koyunbaba, N C; Yakan, S D; Korkmaz, V; Henkelmann, B; Schramm, K-W

    2014-10-15

    Concentrations of PAHs, PCBs and OCPs in sediments and mussels (caged and/or native) were determined at 16 stations in six major sites of coastal Turkey. The biological effects of pollution were evaluated using sediment toxicity tests and enzyme activity assays. EROD, PROD, GST, AChE, CaE, and GR activities were evaluated using the digestive glands of mussels. The total PAH concentrations in the sediments varied between nd and 79,674 ng g(-1) dw, while the total OCP concentrations were in the range of nd to 53.7 ng g(-1) dw. The total PAH concentrations in mussels varied between 22.3 and 37.4 ng g(-1) ww. The average concentrations of total PCBs in mussels were 2795 pg g(-1) ww in the shipyard, 797 pg g(-1) ww in Marina 2 and 53 pg g(-1) ww in Marina 1 stations. The results of whole-sediment toxicity tests showed a strong correlation between toxicity test results and pollutant concentrations. Selected cytosolic enzyme activities in digestive glands differed significantly depending on localities. These differences in enzyme activities were mainly related to the different pollutant levels of the sampling sites. The micro-organic contaminant profile patterns, toxicity tests and biomarker studies showed that shipyards and shipbreaking yards are the major potential sources of organic pollution in coastal areas. PMID:25079235

  7. The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska

    Science.gov (United States)

    Talbot, Sandra L.; Sage, George K; Rearick, Jolene R.; Fowler, Meg C.; Muñiz-Salazar, Raquel; Baibak, Bethany; Wyllie-Echeverria, Sandy; Cabello-Pasini, Alejandro; Ward, David H.

    2016-01-01

    Eelgrass (Zostera marina) populations occupying coastal waters of Alaska are separated by a peninsula and island archipelago into two Large Marine Ecosystems (LMEs). From populations in both LMEs, we characterize genetic diversity, population structure, and polarity in gene flow using nuclear microsatellite fragment and chloroplast and nuclear sequence data. An inverse relationship between genetic diversity and latitude was observed (heterozygosity: R2 = 0.738, P < 0.001; allelic richness: R2 = 0.327, P = 0.047), as was significant genetic partitioning across most sampling sites (θ = 0.302, P < 0.0001). Variance in allele frequency was significantly partitioned by region only in cases when a population geographically in the Gulf of Alaska LME (Kinzarof Lagoon) was instead included with populations in the Eastern Bering Sea LME (θp = 0.128–0.172; P < 0.003), suggesting gene flow between the two LMEs in this region. Gene flow among locales was rarely symmetrical, with notable exceptions generally following net coastal ocean current direction. Genetic data failed to support recent proposals that multiple Zostera species (i.e. Z. japonica and Z. angustifolia) are codistributed with Z. marina in Alaska. Comparative analyses also failed to support the hypothesis that eelgrass populations in the North Atlantic derived from eelgrass retained in northeastern Pacific Last Glacial Maximum refugia. These data suggest northeastern Pacific populations are derived from populations expanding northward from temperate populations following climate amelioration at the terminus of the last Pleistocene glaciation. PMID:27104836

  8. STUDY ON ADHERENCE ABILITY OF PERIODONTAL PATHOGENS AND CARIOGENIC BACTERIA TO HYDROXYAPATITE DISKS

    Institute of Scientific and Technical Information of China (English)

    WANG Min-feng; LI De-yi; LI Zong-lin

    2006-01-01

    Objective To study the adherence activity of six representative periodontopathic and cariogenic bacteria to hydroxyapatite disks. Methods Six periodontopathic and cariogenic bacteria of P. gingivalis, A.actinomycetemcomitans, F. nucleatum, S. sanguis, A. viscosus and S. mutans were cultured in modified MD-300 chemostat according to total fifteen experimental groups of single-specie and each pair of periodontal pathogens and cariogenic bacteria, respectively. After 1h attached live bacteria on removable hydroxyapatite disks was analyzed by culture technologies to evaluate the adherence level. Results The adherence activity of periodontopathic and cariogenic bacteria to HA was in the following order: S. sanguis > A. viscosus > S. mutans > A. actinomycetemcomitans > F. nucleatum > P. gingivalis. The number of periodontopathic bacteria to HA was enhanced by S.sanguis and A. viscosus, respectively. When mix-cultivated with S. mutans, the colonization of P. gingivalis was reduced significantly( P<0.001 ). Periodontopathic bacteria had no effect on the adherence activity of S. mutans and A. viscosus, except S. sanguis. Conclusion It was showed that the adherence activity of periodontal pathogens was weaker than that of cariogenic bacteria and emphasized the importance of bacterial adherence in determining the level of bacterial colonization on tooth surfaces. It was suggested that periodontopathic bacteria can utilize initial colonizers to become those predominant bacteria in periodontal ecosystem, which maybe have close relation to the periodontopathic mechanism.

  9. Isolation of bacteria from ectomycorrhizae of Tuber aestivum Vittad

    Directory of Open Access Journals (Sweden)

    Milana Gryndler

    2013-12-01

    Full Text Available Fifteen different cultivation media were used to isolate bacteria with the idea to obtain taxa specifically associated with ectomycorrhizae of Tuber aestivum. Ectomycorrhizae were collected at the sampling points previously analyzed for bacterial molecular diversity. We isolated 183 bacterial strains and identified them on the basis of the partial sequence of 16S rDNA. Out of these isolates, only 4 corresponded to operational taxonomic units significantly associated with T. aestivum ectomycorrhizae in previous molecular study. Preliminary study of the effect of 12 selected isolates on growth of T. aestivum mycelium showed no stimulation and one isolate induced the damage of hyphae. Different isolation strategy has to be developed to increase the probability of cultivation of potentially important components of T. aestivum mycorrhizosphere.

  10. PRODUCCIÓN DE ENZIMAS EXTRACELLARES POR BACTERIAS AISLADAS DE INVERTEBRADOS MARINOS

    Directory of Open Access Journals (Sweden)

    Jorge León

    2014-06-01

    Full Text Available Con el fin de seleccionar las bacterias marinas con la capacidad de producir enzimas extracelulares ( CEE , se analizaron muestras de Argopecten purpuratus y Crassostrea gigas en el cultivo , así como de otros invertebrados interticlal y bentónicos. La selección de cepas de la CEE de productores se llevó a cabo en Agar Marino ( MA con la adición del sustrato relevante ( almidón , caseína , Tween - 80 , lecitina , ADN y gelatina . La CEE evaluación cepas productoras se llevó a cabo en 102 aislamientos . Los resultados muestran que las bacterias asociadas TOA . purpuratusand C. gigashave las mejores actividades multienzimáticos ; Sin embargo , Semimytilus algosus, Tetrapigus niger y Thais chocolata también son fuentes importantes de productores de bacterias de la CEE. La actividad multienzimático cualitativa en MA ( zonas claras u opacas alrededor de las colonias en mm de diámetro varió de 6 a > 16 mm . La frecuencia de la producción multienzimático fue caseinase 62,74 % , entre esterasa 57,84 % , 52,94 % de la amilasa , la gelatinasa 38,23 % , 33,3 % DNAsa , agarasa 5,43 % y 90,0 % lecitinasa . Los resultados sugieren la posibilidad de usar cepas nativas para fines biotecnológicos

  11. Fungi outcompete bacteria under increased uranium concentration in culture media

    International Nuclear Information System (INIS)

    As a key part of water management at the Ranger Uranium Mine (Northern Territory, Australia), stockpile (ore and waste) runoff water was applied to natural woodland on the mine lease in accordance with regulatory requirements. Consequently, the soil in these Land Application Areas (LAAs) presents a range of uranium concentrations. Soil samples were collected from LAAs with different concentrations of uranium and extracts were plated onto LB media containing no (0 ppm), low (3 ppm), medium (250 ppm), high (600 ppm) and very high (1500 ppm) uranium concentrations. These concentrations were similar to the range of measured uranium concentrations in the LAAs soils. Bacteria grew on all plates except for the very high uranium concentrations, where only fungi were recovered. Identifications based on bacterial 16S rRNA sequence analysis showed that the dominant cultivable bacteria belonged to the genus Bacillus. Members of the genera Paenibacillus, Lysinibacillus, Klebsiella, Microbacterium and Chryseobacterium were also isolated from the LAAs soil samples. Fungi were identified by sequence analysis of the intergenic spacer region, and members of the genera Aspergillus, Cryptococcus, Penicillium and Curvularia were dominant on plates with very high uranium concentrations. Members of the Paecilomyces and Alternaria were also present but in lower numbers. These findings indicate that fungi can tolerate very high concentrations of uranium and are more resistant than bacteria. Bacteria and fungi isolated at the Ranger LAAs from soils with high concentrations of uranium may have uranium binding capability and hence the potential for uranium bioremediation. -- Highlights: ► Fungi outcompete bacteria under increased uranium concentration in culture media. ► Soil microorganisms isolated from the Ranger Land Application Areas (LAAs) were resistant to uranium. ► Bacillus was the most abundant cultivable genus retrieved from the Ranger LAAs soils. ► Uranium in LAAs soils is

  12. Impact of polychaetes (Nereis spp. and Arenicola marina on carbon biogeochemistry in coastal marine sediments†

    Directory of Open Access Journals (Sweden)

    Kristensen Erik

    2001-10-01

    Full Text Available Known effects of bioturbation by common polychaetes (Nereis spp. and Arenicola marina in Northern European coastal waters on sediment carbon diagenesis is summarized and assessed. The physical impact of irrigation and reworking activity of the involved polychaete species is evaluated and related to their basic biology. Based on past and present experimental work, it is concluded that effects of bioturbation on carbon diagenesis from manipulated laboratory experiments cannot be directly extrapolated to in situ conditions. The 45–260% flux (e.g., CO2 release enhancement found in the laboratory is much higher than usually observed in the field (10–25%. Thus, the faunal induced enhancement of microbial carbon oxidation in natural sediments instead causes a reduction of the organic matter inventory rather than an increased release of CO2 across the sediment/water interface. The relative decrease in organic inventory (Gb/Gu is inversely related to the relative increase in microbial capacity for organic matter decay (kb/ku. The equilibrium is controlled by the balance between organic input (deposition of organic matter at the sediment surface and the intensity of bioturbation. Introduction of oxygen to subsurface sediment and removal of metabolites are considered the two most important underlying mechanisms for the stimulation of carbon oxidation by burrowing fauna. Introduction of oxygen to deep sediment layers of low microbial activity, either by downward irrigation transport of overlying oxic water or by upward reworking transport of sediment to the oxic water column will increase carbon oxidation of anaerobically refractory organic matter. It appears that the irrigation effect is larger than and to a higher degree dependent on animal density than the reworking effect. Enhancement of anaerobic carbon oxidation by removal of metabolites (reduced diffusion scale may cause a significant increase in total sediment metabolism. This is caused by three

  13. Free and Bound Fatty-Acids and Hydroxy Fatty-Acids in the Living and Decomposing Eelgrass Zostera-Marina L

    NARCIS (Netherlands)

    De Leeuw, J.; Rijpstra, W.I.C.; Nienhuis, P.H.

    1995-01-01

    Very early diagenetic processes of free, esterified and amide or glycosidically bound fatty acids and hydroxy fatty acids present in well documented samples of living and decomposing eelgrass (Zostera marina L.) were investigated. Free and esterified fatty acids decreased significantly over a period

  14. The filtration activity of a serpulid polychaete population ( Ficopomatus enigmaticus (Fauvel) and its effects on water quality in a coastal marina

    Science.gov (United States)

    Davies, B. R.; Stuart, V.; de Villiers, M.

    1989-12-01

    An estimate of the total standing stock of Ficopomatus enigmaticus (Fauvel) in the Marina da Gama, Zandvlei, near Cape Town was made, and some aspects of the animals' filter-feeding behaviour investigated. Working on values of 5·23 g dry mass of worm (excluding tube) m -2 on the submerged aquatic plant Potamogeton pectinatus L., plus 84·9 g m -2 on the canal walls, the total standing stock of the serpulid was estimated at 2·88±2·24 t (1·4 t on Potamogeton; 1·48 t on canal walls). At the average particle concentrations of Marina water of 5·27 mg l -1, the clearnace rate of F. enigmaticus was 8·59 ml mg -1 worm h -1, resulting in an ingestion rate of 45·27 mg mg -1 worm h -1 of particles in the size range 2-16 μm. Clearance and ingestion rates both increased in direct proportion to food concentration. Using estimates of total standing stocks within the Marina, the F. enigmaticus population clears 2·47 × 10 7 l of water h -1 and consumes 1·3 × 10 8 mg of particles h -1 in the 2-16 μm size range. Thus, the entire volume of the Marina will be filtered in 26·1 h through the activities of this animal alone, illustrating its importance for the maintenance of water quality within this moderately polluted system.

  15. La construcción del paisaje ibérico: aproximación SIG al territorio protohistórico de la Marina Alta

    Directory of Open Access Journals (Sweden)

    Ignacio Grau Mira

    2004-01-01

    Full Text Available Análisis del modelo de ocupación y los patrones de asentamiento en los inicios de la época ibérica en la comarca de la Marina Alta, en el N de la provincia de Alicante, mediante la utilización de los SIG.

  16. Immunity to intracellular bacteria

    OpenAIRE

    Stefan H. E. Kaufmann; Follows, George A.; Martin E. Munik

    1992-01-01

    Immunity to intracellular bacteria including Mycobacterium tuberculosis. Mycobacterium leprae, and Listeria monocytogenes depends on specific T cells. Evidence to be described suggests that CD4 (alpha/beta)T cells which interact with each other and with macrophages contribute to acquired resistence against as well as pathogenesis of intracellular bacterial infections.

  17. Immunity to intracellular bacteria

    Directory of Open Access Journals (Sweden)

    Stefan H. E. Kaufmann

    1992-01-01

    Full Text Available Immunity to intracellular bacteria including Mycobacterium tuberculosis. Mycobacterium leprae, and Listeria monocytogenes depends on specific T cells. Evidence to be described suggests that CD4 (alpha/betaT cells which interact with each other and with macrophages contribute to acquired resistence against as well as pathogenesis of intracellular bacterial infections.

  18. Alternative substrates for higher mushrooms mycelia cultivation

    Directory of Open Access Journals (Sweden)

    TETIANA KRUPODOROVA

    2015-12-01

    Full Text Available Cultivation of 29 species of higher mushroom mycelia on alternative substrates – wastes of Ukrainian oil-fat industry, has been investigated. The amount of mushroom mycelia obtaining on 12 investigated substrates varied significantly, from 1.0 g/L to 22.9 g/L on the 14th day of cultivation. The superficial cultivation adopted in this study allows for easy to choose appropriate medium (substrate for mycelia production. Alternative substrates (compared to glucose-peptone-yeast medium were selected for all studied species, from soybean cake – most suitable for the mycelial growth of 24 species, to walnut cake − suitable only for 2 species. The utilization of substrates has been evaluated by biological efficiency. The best index of biological efficiency varied from 19.0% to 41.6% depending on the mushroom species. It was established high biological efficiency of mycelia cultivation on substrates: wheat seed cake – Pleurotus djamor, Lyophyllum shimeji, Crinipellis schevczenkovi, Phellinus igniarius, Spongipellis litschaueri; oat seed cake – Ganoderma applanatum and G. lucidum; soybean cake – Hohenbuehelia myxotricha, Trametes versicolor, Morchella esculenta, Cordyceps sinensis, C. militaris, and Agrocybe aegerita; rape seed cake – Auriporia aurea; camelina seed cake – Fomes fomentarius. The cultivation of these species are perspective as a biotechnological process of agricultural wastes converted into mycelia, which could be used in different forms of products with therapeutic action: powder or tablets nutraceuticals or ingredients for functional foods.

  19. Prospects for Sorghum cultivation in Poland

    Directory of Open Access Journals (Sweden)

    Roman Prażak

    2016-06-01

    Full Text Available The article presents the origin and cultivation history of sorghum (Sorghum spp., its biology, requirements, cultivation techniques, and utilization. Sorghum is a cereal of the Poaceae. It is one of the most important crop plants grown in warmer parts of the world. Sorghum comes from Africa and therefore has very high heat requirements. In comparison with other crop plants, it is characterized by more efficient nutrient and water utilization. Sorghum grain is used to produce porridge, flour, syrup, sugar, ethanol, vegetable oil, starch, wax, paints, and animal fodder (the grain and entire plant. Sorghum straw is used to produce fibres, paper, and building materials. Sorghum has high energy value and can be an excellent source of renewable energy. It is easy to cultivate, with low soil and nutrient requirements. Due to its content of allelopathic compounds, it inhibits weed growth and has a phytosanitary effect. It is also resistant to disease and pests. It is a short-day plant, and in Polish climate conditions, it does not form sufficiently mature seeds, but produces a very high yield of green matter that can be used for fodder. Cultivation of sorghum during periodic water shortages may be an alternative solution for obtaining fodder when maize cultivation is unreliable.

  20. Black truffle cultivation: a global reality

    Directory of Open Access Journals (Sweden)

    Santiago Reyna

    2014-08-01

    Full Text Available Aim of study: In recent decades the cultivation of the black truffle Tuber melanosporum has expanded across all the Mediterranean-climate regions, but also to other regions outside the European standard for the species. We aim to describe the current extent of T. melanosporum cultivation.Area of study: Tuber melanosporum plantations in Europe, the Mediterranean basin, Australia, New Zealand, China, America and South Africa.Material and Methods: The socioeconomic impact of T. melanosporum cultivation, the way in which the current situation has been achieved and the knowledge needed for its progress are reviewed.Research highlights: T. melanosporum has been successfully cultivated in several countries outside its natural area, but many practices are still empirical and thus yields cannot be guaranteed. The recent advances in molecular techniques and genome science are helping to overcome some of the difficulties traditionally constraining truffle research. The role of truffles as a transitional element between agricultural and forestry activities makes its cultivation a paradigm of sustainable rural development.Keywords: Tuber melanosporum; Europe; Australia; New Zealand; Chile; USA.

  1. INFLUENCE OF CULTIVATION CONDITIONS ON ANTIMICROBIAL PROPERTIES OF Nocardia vaccinii ІMV B-7405 SURFACTANTS

    Directory of Open Access Journals (Sweden)

    Т. P.

    2016-02-01

    Full Text Available The aim of the work was investigation of antimicrobial effect of Nocardia vaccinii ІMV B-7405 surfactants, synthesized in various culture conditions, against phytopathogenic bacteria of genera Pseudomonas, Xanthomonas, and Pectobacterium. The antimicrobial properties of surfactant were determined in suspension culture by Koch method and also by index of the minimum inhibitory concentration. Surfactants were extracted from supernatant of cultural liquid using mixture of chloroform and methanol (2: 1. It has been established that antimicrobial properties of surfactants depend on the nature of the carbon source in the medium (refined vegetable oil, as well as waste oil after frying potatoes and meat, glycerol, the duration of the cultivation (5 and 7 days, the degree of purification of the surfactants (the supernatant of cultural liquid, purified surfactants solution and the test culture type. The highest antimicrobial activity was exhibited by purified surfactants solutions synthesized by microorganisms on the waste oil after potato frying (decreased survival of pathogenic bacteria by 50–95%, and surfactants formed within 7 days of strain B-7405 ІMV cultivation on all test substrates (minimum inhibitory concentration 7–40 µg/mL, which is several times lower than the surfactant, synthesized for 5 days. These data are promising for the development of ecologically friendly biopreparations for the regulation of the number of phytopathogenic bacteria.

  2. MICROFLORA CULTIVABLE Y ENDOMICORRIZAS OBTENIDAS EN HOJARASCA DE BOSQUE (PÁRAMO GUERRERO FINCA PUENTE DE TIERRA ZIPAQUIRÁ, COLOMBIA Cultivable Microflora and Endomycorrhizas Obtained in Litter Forest (Paramo Guerrero Finca Puente de Tierra Zipaquirá, Colombia

    Directory of Open Access Journals (Sweden)

    ELEONORA BERNAL

    2006-06-01

    Full Text Available Se realizó el recuento de microorganismos cultivables (bacterias y hongos, microorganismos celulolíticos y endomicorrizas presentes en la hojarasca de bosque (finca Puente de Tierra en el páramo Guerrero, Colombia. Los microorganismos aislados con mayor frecuencia pertenecían a los géneros Staphylococcus, Bacillus, Pseudomonas, Micrococcus, Penicillium, Rhodotorula y se aisló una cepa de Cladosporium sp. en un medio selectivo con carboximetil celulosa. Así mismo, se encontraron ocho morfotipos de endomicorrizas, entre los cuales predominaron especies de Glomus y Acaulospora. Este estudio contribuye con el conocimiento de la microbiota cultivable de hojarasca, que ha sido poco explorada en ecosistemas de páramo.The count of cultivable microorganisms (bacteria and fungi, cellulolytic microorganisms and endomycorrhizas present in litter forest (property Puente de Tierra in the Guerrero’s moor, Colombia was made. The most frequently isolated microorganisms belonged to the Staphylococcus, Bacillus, Pseudomonas, Micrococcus, Penicillium and Rhodotorula genus and Cladosporium sp., which is a cellulolytic microorganism, was isolated in carboxymethyl cellulose agar. In addition eight morphotypes of endomycorrhizas were found, species of Glomus and Acaulospora predominated among them. This study contributes with the knowledge of the cultivable microorganisms of litter that have been little explored in moor ecosystems.

  3. Biogeografía marina de Chile continental Marine biogeography of continental Chile

    Directory of Open Access Journals (Sweden)

    PATRICIO A. CAMUS

    2001-09-01

    Full Text Available Por casi un siglo, varios autores han analizado los patrones de distribución de la fauna y flora marina del Pacífico de Sudamérica y de la costa de Chile en particular, con el propósito de establecer el número de las unidades biogeográficas presentes. Si bien los patrones generales actuales son relativamente bien conocidos, la mayoría de los estudios se ha enfocado en las discontinuidades distribucionales y en propuestas de clasificación más que en los factores y procesos dinámicos que han formado las unidades espaciales identificadas. Aun en el caso de las clasificaciones, las conclusiones publicadas se basan principalmente en el análisis de uno o pocos grupos seleccionados, y presentan diferencias importantes en los criterios de selección de los grupos, el número de especies involucrado y la metodología usada. Por otra parte, las discrepancias entre estudios específicos tienden a obscurecer un fenómeno relevante y de mayor escala como es la dinámica de las biotas, uno de los aspectos biogeográficos menos conocidos en Chile. En tal contexto, este trabajo presenta una revisión de literatura sobre la biogeografía marina de Chile y sus aspectos asociados, con los siguientes objetivos: (a resumir las características oceanográficas, climáticas y geomorfológicas de la costa continental de Chile; (b discutir 27 clasificaciones biogeográficas publicadas para la costa chilena, analizando los criterios y procedimientos usados por los autores, sus conclusiones principales, y la concordancia entre los estudios; (c evaluar los procesos dispersivos y vicariantes asociados a los desplazamientos y modificaciones de las biotas de la región, en función de los antecedentes disponibles sobre las condiciones existentes y los principales eventos ocurridos durante los períodos Terciario y Cuaternario; y (d proponer un escenario de cambio biogeográfico basado en determinantes históricas y su influencia en la formación, carácter y din

  4. Application of photobioreactors to cultivation of microalgae

    Institute of Scientific and Technical Information of China (English)

    陈雷; 王光玉

    2003-01-01

    An overview of photobioreactors now in use for production of microalgae world wide is presented, andthe application of photobioreactors to the cultivation of microalgae is discussed in detail. It is pointed out thathigh cell density and industrial production of microalgae can be achieved using many kinds of closed photobiore-actors including fermentor, tubular and flat plate photobioreactors, and the cultivation of Spirulina, Chlorella,Dunaliella tertiolecta and Porphyridium cruentrim by photobioreactors can achieve higher and steadier produc-tivity than the cultivation of microalgae by an open air system. More and more researches indicate that tubularand flat plate photobioreactors are the development trend for photobioreactors with bubbles and air lift stirrers,and high bright light-emitting diodes are the most economic light source with great potential for future develop-ment of photobioreactors. Photobioreactors can also be used for the production of high-value metabolite ( EPA orDHA) using some microalgae species for energy development and environment protection.

  5. ECONOMICS OF CULTIVATION IN ANDHRA PRADESH

    Directory of Open Access Journals (Sweden)

    Balakrishna Ankalam

    2014-10-01

    Full Text Available Farming as a business is greatly influenced by the level and structure of cost of cultivation. Before green revolution farmers were practicing traditional farming methods in which they use home supplied inputs with conventional practices. The risk and uncertainty associated with cultivation does not induce the farmers to invest more on farm business. This in turn leads to low level of input use. In cultivation farmers are constrained to take up more remunerative crop enterprises. People depending on this sector are characterized by low income and higher poverty. To acquire comprehensive understanding of the problems prevailing in agriculture, a Multistage Random Sampling Method is employed. In the first step Andhra Pradesh is divided into three regions, namely Coastal Andhra, Telangana and Rayalaseema regions. The households are divided into five farming categories.

  6. Cultivation of EFL Learners’Intercultural Competence

    Institute of Scientific and Technical Information of China (English)

    夏晨

    2012-01-01

      Nowadays, educators from home and abroad believe that learning a foreign language means learning a great deal of the foreign civilization and culture. And the utmost goal of language teaching is to cultivate EFL learners’communicative competence, but not merely the linguistic knowledge. Thus, teaching a foreign language is more than teaching new words, expressions and grammar rules, but should also incorporate the target culture elements into language knowledge. In order to improve EFL learners’English proficiency, teachers must make efforts to cultivate EFL learners’intercultural competence and promote their sensibility and adaptability to the differences between Chinese culture and the Western culture. Only by doing so, can EFL learners communicate with native speakers appropriately and smoothly. This pa-per proposes some effective teaching techniques and methods that can be applied in English classroom to cultivate Chinese EFL learners’in-tercultural competence.

  7. Characterization and cultivation of Psilocybe barrerae

    Directory of Open Access Journals (Sweden)

    E. Montiel

    2008-01-01

    Full Text Available A strain of Psilocybe barrerae (Strophariaceae was isolated, characterized, and cultivated under laboratory conditions. Mycelial colonies were white to off-white, showing average growth rates of 3.9 mm/day on potato dextrose agar (PDA and 3.6 mm/day on corn meal agar (CMA. The production of biomass varied from 0.2872 g dry weight/L/day (CMA to 0.1353 g dry weight/L/day (PDA. One flush of fruit bodies, cultivated on a mixture of sand and compost as substrate, was produced reaching a biological efficiency of 28.9%. The morphology of cultivated fruit bodies was equivalent to that of wild mushrooms

  8. Phenylhydrazines in the cultivated mushroom (Agaricus bisporus)

    DEFF Research Database (Denmark)

    Andersson, H. C.; Gry, Jørn

    2004-01-01

    In 1991, the Nordic Working Group on Food Toxicology and Risk Evaluation (NNT) reviewed the available data on phenylhydrazines naturally occurring in the cultivated mushroom. It was concluded that the mushroom may contain about 500 mg of the hydrazine derivatives per kg fresh weight. The hydrazine...... derivatives as well as extracts of the cultivated mushroom were mutagenic to a variable degree in most of the reported short-term tests. The raw mushroom and several of the hydrazines induced tumours when administered to Swiss mice as reported by American scientists. However, reservations were expressed...... as to the design of the studies. Based on this review, and due to the concern expressed, a Nordic project (coordinated by Jørn Gry, Danish Veterinary and Food Administration) was initiated dealing with toxicological and chemical studies on the cultivated mushroom and its phenylhydrazine derivatives in order...

  9. Zeolites as possible biofortifiers in Maitake cultivation

    Directory of Open Access Journals (Sweden)

    Vunduk Jovana

    2014-01-01

    Full Text Available The levels of Ni, Cu and Mg in Grifola frondosa (also known as Maitake mushroom fruit body produced on zeolite Minazel Plus (MG-supplemented substrate were measured with inductively coupled plasma optical emission spectrometry (ICP-OES. Two different concentrations of MG were added to the substrate for mushroom cultivation. Levels of selected metals were measured in cultivated dry carpophores. The content of Ni increased in fruit bodies produced on supplemented substrate, while in case of Cu, a pronounced decrease was observed. When two different concentrations of MG were implemented, the Mg level showed both positive and negative trend, depending on the applied concentration of zeolite. MG in a concentration of 1% showed the strongest influence on the observed elements in the cultivated fruiting body of Maitake mushroom. [Projekat Ministarstva nauke Republike Srbije, br. 46010

  10. Cellulase and xylanase productions by isolated Amazon Bacillus strains using soybean industrial residue based solid-state cultivation

    Directory of Open Access Journals (Sweden)

    Heck Júlio X.

    2002-01-01

    Full Text Available In Brazil, a large amount of a fibrous residue is generated as result of soybean (Glycine max protein production. This material, which is rich in hemicellulose and cellulose, can be used in solid state cultivations for the production of valuable metabolites and enzymes. In this work, we studied the bioconversion of this residue by bacteria strains isolated from water and soil collected in the Amazon region. Five strains among 87 isolated bacteria selected for their ability to produce either celullases or xylanases were cultivated on the aforementioned residue. From strain BL62, identified as Bacillus subtilis, it was obtained a preparation showing the highest specific cellulase activity, 1.08 UI/mg protein within 24 hours of growth. Concerning xylanase, the isolate BL53, also identified as Bacillus subtilis, showed the highest specific activity for this enzyme, 5.19 UI/mg protein within 72 hours of cultivation. It has also been observed the production of proteases that were associated with the loss of cellulase and xylanase activities. These results indicated that the selected microorganisms, and the cultivation process, have great biotechnological potential.

  11. Significance of anaerobes and oral bacteria in community-acquired pneumonia.

    Directory of Open Access Journals (Sweden)

    Kei Yamasaki

    Full Text Available BACKGROUND: Molecular biological modalities with better detection rates have been applied to identify the bacteria causing infectious diseases. Approximately 10-48% of bacterial pathogens causing community-acquired pneumonia are not identified using conventional cultivation methods. This study evaluated the bacteriological causes of community-acquired pneumonia using a cultivation-independent clone library analysis of the 16S ribosomal RNA gene of bronchoalveolar lavage specimens, and compared the results with those of conventional cultivation methods. METHODS: Patients with community-acquired pneumonia were enrolled based on their clinical and radiological findings. Bronchoalveolar lavage specimens were collected from pulmonary pathological lesions using bronchoscopy and evaluated by both a culture-independent molecular method and conventional cultivation methods. For the culture-independent molecular method, approximately 600 base pairs of 16S ribosomal RNA genes were amplified using polymerase chain reaction with universal primers, followed by the construction of clone libraries. The nucleotide sequences of 96 clones randomly chosen for each specimen were determined, and bacterial homology was searched. Conventional cultivation methods, including anaerobic cultures, were also performed using the same specimens. RESULTS: In addition to known common pathogens of community-acquired pneumonia [Streptococcus pneumoniae (18.8%, Haemophilus influenzae (18.8%, Mycoplasma pneumoniae (17.2%], molecular analysis of specimens from 64 patients with community-acquired pneumonia showed relatively higher rates of anaerobes (15.6% and oral bacteria (15.6% than previous reports. CONCLUSION: Our findings suggest that anaerobes and oral bacteria are more frequently detected in patients with community-acquired pneumonia than previously believed. It is possible that these bacteria may play more important roles in community-acquired pneumonia.

  12. Functional State Modelling of Saccharomyces cerevisiae Cultivations

    Directory of Open Access Journals (Sweden)

    Iasen Hristozov

    2004-10-01

    Full Text Available The implementation of functional state approach for modelling of yeast cultivation is considered in this paper. This concept helps in monitoring and control of complex processes such as bioprocesses. Using of functional state modelling approach for fermentation processes aims to overcome the main disadvantage of using global process model, namely complex model structure and big number of model parameters. The main advantage of functional state modelling is that the parameters of each local model can be separately estimated from other local models parameters. The results achieved from batch, as well as from fed-batch, cultivations are presented.

  13. Low absorption state of phycocyanin from Acaryochloris marina antenna system: On the interplay between ionic strength and excitonic coupling

    Science.gov (United States)

    Nganou, Collins

    2013-07-01

    This paper studies the excitonic factor in the excited state energy transfer of phycobilisome (PBS) by using a polarized time-resolved pump-probe and by changing the ionic strength of the cofactors' medium in the PBS of Acaryochloris marina (A. marina). As a result, the interplay between the surrounding medium and the closely excited adjacent cofactors is shown to be a negligible factor of the excitonic decay kinetics at 618 nm of the phycocyanin (PC), while it appears as a driving factor of an increase in excitonic delocalization at 630 nm. The obtained anisotropy values are consistent with the contribution of ionic strength in the excitonic mechanism in PBS. These values were 0.38 in high ionic strength and 0.4 in low ionic strength at 618 nm, and 0.52 in high ionic strength and 0.4 in low ionic strength at 630-635 nm. The anisotropy value of 0.52 in high phosphate is similar at 630 nm and 635 nm, which is consistent with an excitonic delocalization band at 635 nm. The 635 nm band is suggested to show the true low energy level of PC in A. marina PBS. The anisotropy decay kinetic at 630 nm suggests that the excited state population of PC is not all equilibrated in 3 ps because of the existence of the 10 ps decay kinetic component. The presence of the slow kinetic decay component in high, and low ionic strength, is consistent with a 10 and 14 ps energy transfer pathway, while the 450 fs kinetic decay component is consistent with the presence of an additional excitation energy transfer pathway between adjacent α84 and β84. Furthermore, the 450 fs decay kinetic is suggested to be trapped in the trimer, while the 400 fs decay kinetic rules out an excitonic flow from low energy level PC to allophycoyanin. This excitonic flow may occur between β84 in adjacent trimers, towards the low energy state of the PBS rod.

  14. Impacts of mercury stress on Avicennia marina seedlings eco-physiology%汞胁迫对白骨壤(Avicennia marina)幼苗生理生态的影响

    Institute of Scientific and Technical Information of China (English)

    袁彦婷; 丁振华; 张玲

    2011-01-01

    In order to understand the heavy metals resistance mechanism of mangrove, a stress experiment with the seedlings of mangrove species Avicennia marina from Fujian Province was conducted to study the impacts of different concentration (1, 5, 10, 50, and 100 mg · L-1) mercury ( Hg2+ ) on the seedlings leaf photosynthesis and antioxydase activities. With the increase of added Hg2+ concentration and exposure time, the seedlings leaf net photosynthetic rate ( Pn) and chlorophyll content decreased. Under the stress of high concentration Hg2+( ≥50 mg · L-1) , the decrement of Pn was higher than that under the stress of low concentration Hg2+ , and the Pn decreased rapidly after 48 h. There was a significantly negative correlation between Pn and extracellular carbon dioxide concentration ( Ci) . The chlorophyll content decreased with increasing Hg2+ concentration. The stomatal conductance ( Gs ) had different responses to the stress of different Hg2+ concentration. At low Hg2+ concentration, stomatal factors could limit the photosynthesis; while at high Hg2+ concentration, non-stomatal factors could be the main causes inhibiting photosynthesis. Low Hg2+ concentration promoted the activities of superoxide dismutase and peroxidase, while high Hg2+ concentration inhibited the activities of the two enzymes, being the lowest under the stress of 100 mg Hg2+ · L-1. All the results implied that Hg2+ could inhibit the leaf photosynthesis of A. marina, and high concentration Hg2+ impaired the active oxygen elimination capability of A. marina, making the plants easily to be damaged.%为了解红树植物的重金属抗性机制,对白骨壤(Avicennia marina)幼苗进行不同浓度Hg2+(1、5、10、50、100 mg·L-1)的胁迫实验,测定并分析了Hg2+胁迫对白骨壤幼苗叶片的光合作用和抗氧化酶活性的影响.结果表明:叶片净光合速率随着胁迫时间的延长而降低,高浓度(≥150 mg·L-1)Hg2+胁迫下叶片的净光合

  15. Can bacteria save the planet?

    OpenAIRE

    Hunter, Philip

    2010-01-01

    Bacteria might just hold the key to preserving the environment for our great grandchildren. Philip Hunter explores some of the novel ways in which systems biology and biotechnology are harnessing bacteria to produce renewable energy and clean up pollution.

  16. Probing minority population of antibiotic-resistant bacteria.

    Science.gov (United States)

    Huang, Tianxun; Zheng, Yan; Yan, Ya; Yang, Lingling; Yao, Yihui; Zheng, Jiaxin; Wu, Lina; Wang, Xu; Chen, Yuqing; Xing, Jinchun; Yan, Xiaomei

    2016-06-15

    The evolution and spread of antibiotic-resistant pathogens has become a major threat to public health. Advanced tools are urgently needed to quickly diagnose antibiotic-resistant infections to initiate appropriate treatment. Here we report the development of a highly sensitive flow cytometric method to probe minority population of antibiotic-resistant bacteria via single cell detection. Monoclonal antibody against TEM-1 β-lactamase and Alexa Fluor 488-conjugated secondary antibody were used to selectively label resistant bacteria green, and nucleic acid dye SYTO 62 was used to stain all the bacteria red. A laboratory-built high sensitivity flow cytometer (HSFCM) was applied to simultaneously detect the side scatter and dual-color fluorescence signals of single bacteria. By using E. coli JM109/pUC19 and E. coli JM109 as the model systems for antibiotic-resistant and antibiotic-susceptible bacteria, respectively, as low as 0.1% of antibiotic-resistant bacteria were accurately quantified. By monitoring the dynamic population change of a bacterial culture with the administration of antibiotics, we confirmed that under the antimicrobial pressure, the original low population of antibiotic-resistant bacteria outcompeted susceptible strains and became the dominant population after 5hours of growth. Detection of antibiotic-resistant infection in clinical urine samples was achieved without cultivation, and the bacterial load of susceptible and resistant strains can be faithfully quantified. Overall, the HSFCM-based quantitative method provides a powerful tool for the fundamental studies of antibiotic resistance and holds the potential to provide rapid and precise guidance in clinical therapies. PMID:26852201

  17. Characterization and bioremediation potential of phosphate solubilizing bacteria isolated from tunisian phosphogypsum

    International Nuclear Information System (INIS)

    Phosphorus bioavailability is often limited in agricultural soils. In this work, two bacteria were isolated from Tunisian phosphogypsum (PG). These ones have the capacity to dissolve inorganic phosphate (CaHPO4 and Ca3(PO4)2). This capacity is determined by the clear halo formation around colonies in NBRIP agar medium. To confirm the solubilization phenotype, the concentration of solubilized phosphate by isolates cultivated in NBRIP broth containing PG was measured. These two bacteria noted BRM17 and BRM18 are identified as Pantoea sp. and Pseudomonas sp, respectively. The results show that BRM17 solubilizes about 2 times more phosphate in broth NBRIP medium after 48 hours of incubation than BRM18. Tunisian phosphogypsum contains 1100 ppm of strontium (Sr). Sr toxicity on bacteria was determined by concentration that gives half-maximal inhibition of bacteria (IC50). Compared with Cupriavidus metallidurans (bacteria tolerant to most of heavy metals), BRM17 and BRM18 cultivated in broth medium containing increasing concentrations of Sr were found tolerant to Sr. The potential of bioremediation is tested by the rate evaluation of Sr adsorption by these bacteria. The results show the high ability of BRM18 to adsorb Sr. The resistance of isolates to ionizing radiation is also determined by the exposure of bacterial cultures to various doses of gamma radiation. BRM17 is considered radioresistant while BRM18 is radiosensitive. The effect on seed germination of wheat and pea inoculated with bacteria was tested. No positive effect was detected. This study is considered with the use of BRM17 and BRM18 in a bioremediation process and the improvement of phosphate uptake by plants cultivated in polluted environments.

  18. Karl Lenz, Marina Adler: Geschlechterverhältnisse. Einführung in die sozialwissenschaftliche Geschlechterforschung Band 1. Weinheim u.a.: Juventa Verlag 2010. — Karl Lenz, Marina Adler: Geschlechterbeziehungen. Weinheim u.a.: Juventa Verlag 2011.

    Directory of Open Access Journals (Sweden)

    Heike Kahlert

    2012-05-01

    Full Text Available Karl Lenz und Marina Adler orientieren sich in ihrem zweibändigen Lehrbuch zur sozialwissenschaftlichen Geschlechterforschung an der etablierten Unterscheidung zwischen Makro- und Mikrosoziologie. Im ersten Band werden theoretische Perspektiven der Geschlechterforschung und unterschiedliche Zusammenhänge zu Kultur nachgezeichnet sowie zentrale Themenfelder einer Sozialstrukturanalyse der Geschlechterordnung fokussiert, nämlich Recht, Politik, Bildung und Arbeit. Im zweiten Band stehen neben der Sozialisation ausgewählte Erträge der mikrosoziologischen Geschlechterforschung im Zentrum, nämlich Körper, Sexualität, persönliche Beziehungen, Devianz und Gewalt. In dieser überfälligen, informativen, sorgfältig recherchierten, aber auch vergleichsweise traditionellen und empirisch orientierten Einführung wird die Geschlechterforschung zwar in einer breiteren Diversity-Forschung verortet, das Verhältnis von Diversität und Geschlecht leider aber nicht reflektiert.In their two-volume textbook on social-scientific gender studies, Karl Lenz and Marina Adler are guided by the established distinction between macro- and microsociology. The first volume traces theoretical perspectives on gender studies and various connections to culture. Furthermore, it also zeroes in on central topics of a social structure analysis of the gender order, namely law, politics, education, and work. The second volume focuses on socialization as well as selected findings of microsociological gender studies, namely body, sexuality, personal relationships, deviance, and violence. This overdue, informative, carefully researched, but comparatively traditional and empirically oriented introduction locates gender studies within the broader field of diversity research; however, the relationship between diversity and gender is unfortunately not reflected on.

  19. Cable Bacteria in Freshwater Sediments

    OpenAIRE

    Risgaard-Petersen, Nils; Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

    2015-01-01

    In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the fre...

  20. Manufacture of Probiotic Bacteria

    Science.gov (United States)

    Muller, J. A.; Ross, R. P.; Fitzgerald, G. F.; Stanton, C.

    Lactic acid bacteria (LAB) have been used for many years as natural biopreservatives in fermented foods. A small group of LAB are also believed to have beneficial health effects on the host, so called probiotic bacteria. Probiotics have emerged from the niche industry from Asia into European and American markets. Functional foods are one of the fastest growing markets today, with estimated growth to 20 billion dollars worldwide by 2010 (GIA, 2008). The increasing demand for probiotics and the new food markets where probiotics are introduced, challenges the industry to produce high quantities of probiotic cultures in a viable and stable form. Dried concentrated probiotic cultures are the most convenient form for incorporation into functional foods, given the ease of storage, handling and transport, especially for shelf-stable functional products. This chapter will discuss various aspects of the challenges associated with the manufacturing of probiotic cultures.

  1. Exopolysaccharides from Marine Bacteria

    Institute of Scientific and Technical Information of China (English)

    CHI Zhenming; FANG Yan

    2005-01-01

    Microbial polysaccharides represent a class of important products of growing interest for many sectors of industry. In recent years, there has been a growing interest in isolating new exopolysaccharides (EPSs)-producing bacteria from marine environments, particularly from various extreme marine environments. Many new marine microbial EPSs with novel chemical compositions, properties and structures have been found to have potential applications in fields such as adhesives,textiles, pharmaceuticals and medicine for anti-cancer, food additives, oil recovery and metal removal in mining and industrial waste treatments, etc This paper gives a brief summary of the information about the EPSs produced by marine bacteria,including their chemical compositions, properties and structures, together with their potential applications in industry.

  2. Lipoprotein sorting in bacteria.

    Science.gov (United States)

    Okuda, Suguru; Tokuda, Hajime

    2011-01-01

    Bacterial lipoproteins are synthesized as precursors in the cytoplasm and processed into mature forms on the cytoplasmic membrane. A lipid moiety attached to the N terminus anchors these proteins to the membrane surface. Many bacteria are predicted to express more than 100 lipoproteins, which play diverse functions on the cell surface. The Lol system, composed of five proteins, catalyzes the localization of Escherichia coli lipoproteins to the outer membrane. Some lipoproteins play vital roles in the sorting of other lipoproteins, lipopolysaccharides, and β-barrel proteins to the outer membrane. On the basis of results from biochemical, genetic, and structural studies, we discuss the biogenesis of lipoproteins in bacteria, their importance in cellular functions, and the molecular mechanisms underlying efficient sorting of hydrophobic lipoproteins to the outer membrane through the hydrophilic periplasm. PMID:21663440

  3. Bacteria, Phages and Septicemia

    OpenAIRE

    Gaidelytė, Aušra; Vaara, Martti; Bamford, Dennis H.

    2007-01-01

    The use of phages is an attractive option to battle antibiotic resistant bacteria in certain bacterial infections, but the role of phage ecology in bacterial infections is obscure. Here we surveyed the phage ecology in septicemia, the most severe type of bacterial infection. We observed that the majority of the bacterial isolates from septicemia patients spontaneously secreted phages active against other isolates of the same bacterial strain, but not to the strain causing the disease. Such ph...

  4. Bacteria, food, and cancer

    OpenAIRE

    Rooks, Michelle G.; Garrett, Wendy S.

    2011-01-01

    Gut microbes are essential components of the human organism—helping us metabolize food into energy, produce micronutrients, and shape our immune systems. Having a particular pattern of gut microbes is also increasingly being linked to medical conditions including obesity, inflammatory bowel disease, and diabetes. Recent studies now indicate that our resident intestinal bacteria may also play a critical role in determining one's risk of developing cancer, ranging from protection against cancer...

  5. Lethal Mutagenesis of Bacteria

    OpenAIRE

    Bull, James J; Wilke, Claus O.

    2008-01-01

    Lethal mutagenesis, the killing of a microbial pathogen with a chemical mutagen, is a potential broad-spectrum antiviral treatment. It operates by raising the genomic mutation rate to the point that the deleterious load causes the population to decline. Its use has been limited to RNA viruses because of their high intrinsic mutation rates. Microbes with DNA genomes, which include many viruses and bacteria, have not been considered for this type of treatment because their low intrinsic mutatio...

  6. Bacteria are not Lamarckian

    OpenAIRE

    Danchin, Antoine

    2007-01-01

    Instructive influence of environment on heredity has been a debated topic for centuries. Darwin's identification of natural selection coupled to chance variation as the driving force for evolution, against a formal interpretation proposed by Lamarck, convinced most scientists that environment does not specifically instruct evolution in an oriented direction. This is true for multicellular organisms. In contrast, bacteria were long thought of as prone to receive oriented influences from their ...

  7. Population Dynamic of Dendronephthya sp.-Associated Bacteria in Natural and Artificial Habitats

    Directory of Open Access Journals (Sweden)

    SUSAN SOKA

    2011-06-01

    Full Text Available Dendronephthya sp. is a soft coral that has huge distribution starting from Indopacific, Tonga, Solomon Islands to Great Barrier Reef in Australia. However, this soft corals survive only in short period after cultivation in artificial habitat (aquarium. Recent study showed that the soft coral Dendronephtya sp. has an association or symbiotic relationship with several bacteria, commonly known as coral associated bacteria (CAB. In this study, we compared the population dynamic of Dendronephthya sp.-associated bacteria in natural and artificial habitat, resulting different bacterial community profiles using terminal restriction fragment length polymorphism (T-RFLP analysis of bacterial community DNA. There were 15 main classes of bacterial population identified along with uncultured microorganism, uncultured organism, uncultured bacteria and unidentified organism. Members of Actinobacteria, Arthrobacteria, Chlorobia, Caldilineae, -proteobacteria and Proteobacteria were predicted to give contributions in the survival ability of both Dendronephthya sp. The cultivation of soft corals after 2 weeks in artificial habitat increases bacterial population similarity on 2 different samples by 10%. Bacterial population similarity in artificial habitat would increase along with the longer cultivation time of soft corals.

  8. Denitrification by extremely halophilic bacteria

    Science.gov (United States)

    Hochstein, L. I.; Tomlinson, G. A.

    1985-01-01

    Extremely halophilic bacteria were isolated from widely separated sites by anaerobic enrichment in the presence of nitrate. The anaerobic growth of several of these isolates was accompanied by the production of nitrite, nitrous oxide, and dinitrogen. These results are a direct confirmation of the existence of extremely halophilic denitrifying bacteria, and suggest that such bacteria may be common inhabitants of hypersaline environments.

  9. Effects of filamentous macroalgae mats on growth and survival of eelgrass, Zostera marina, seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Olesen, Birgit; Krause-Jensen, Dorte

    2012-01-01

    A laboratory experiment was conducted to assess the effect of filamentous algae mats on the performance of seedlings of the eelgrass, Zostera marina. The seedlings were covered by three levels (3, 6 and 9 cm) of natural (Chaetomorpha linum) and imitation algae mats and it was hypothesized that the...... effects of the natural algae on seedling growth may be more severe because of the metabolic demands of the algae. Results show that coverage by both C. linum and imitation algae significantly reduced seedling growth and increased allocation of resources to above ground tissues. No clear effects of algae...... type on seedling performance were found and since there were no differences in oxygen or sulphide concentrations between the treatments, we attribute the reductions in seedling growth to algal shading. In a comparison with other studies it is shown that lower turbulence, higher temperature, organically...

  10. Effects of filamentous macroalgae on growth and survival of eelgrass, Zostera marina, seedlings

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Krause-Jensen, Dorte; Olesen, Birgit

    Seedling survival and patch establishment is a major bottle-neck for eelgrass (Zostera marina) re-colonization as mortality rates among the young seedlings are high, even in areas where conditions should support survival. We here focus on the potential negative effects of drifting macroalgal mats...... on eelgrass seedling performance. The covering of eelgrass shoots by algae decreases the light availability and may hamper the diffusive movement of oxygen, inorganic carbon and nutrients to and from the shoots. Moreover, the high productivity of the algae can result in large diurnal oxygen...... variations within the mat and periods of anoxia in the lower parts can possibly be followed by release of sulphide from the sediments. We assessed the impact of algae mats on seedling performance and evaluated the relative importance of light attenuation and low oxygen concentrations for seedling growth and...

  11. Temporal and spatial dynamics of ephemeral macroalgal communities in eelgrass, Zostera marina, beds

    DEFF Research Database (Denmark)

    Rasmussen, Jonas; Pedersen, Morten Foldager; Olesen, Birgit; Nielsen, Søren Laurentius; Pedersen, Troels Møller

    In a field study we investigated the temporal dynamics of drift-algal assemblages on both small (1 m2) and larger (2500 m2) spatial scales in two shallow (1-3 m) and relatively sheltered locations in Aarhus Bay and Isefjorden, Denmark. Drift-algal cover was estimated every second day in 40...... permanent plots (1 m2) randomly positioned in a 2500 m2 study area during three 8-12 days periods of the growth season. Results show that the algal assemblages were highly dynamic on the small spatial scale as cover within individual plots changed regularly between subsequent observations. The change in...... algal cover was inversely correlated with the cover of eelgrass, Zostera marina, suggesting that algae were retained by the eelgrass leaves. At the larger spatial scale algal cover was less variable and significant changes occurred just a few times during the study periods. Variability was caused either...

  12. Isotopic signatures of eelgrass (Zostera marina L.) as bioindicator of anthropogenic nutrient input in the western Baltic Sea.

    Science.gov (United States)

    Schubert, Philipp R; Karez, Rolf; Reusch, Thorsten B H; Dierking, Jan

    2013-07-15

    Eutrophication is a global environmental problem. Better management of this threat requires more accurate assessments of anthropogenic nitrogen (N) inputs to coastal systems than can be obtained with traditional measures. Recently, primary producer N isotopic signatures have emerged as useful proxy of such inputs. Here, we demonstrated for the first time the applicability of this method using the widespread eelgrass (Zostera marina) in the highly eutrophic Baltic Sea. Spatial availability of sewage N across a bay with one major sewage outflow predicted by eelgrass δ(15)N was high near and downstream of the outflow compared to upstream, but returned to upstream levels within 4 km downstream from the outfall. General conclusions were corroborated by traditional eutrophication measures, but in contrast to these measures were fully quantitative. Eelgrass N isotope ratios therefore show high potential for coastal screens of eutrophication in the Baltic Sea, and in other areas with eelgrass meadows. PMID:23711843

  13. Excited state energy transfer between CdSe nanocrystals and the isolated phycobiliprotein antenna of A.marina

    Energy Technology Data Exchange (ETDEWEB)

    Schmitt, Franz-Josef; Jeyasangar, Vithiya; Suedmeyer, Heinrich; Schoengen, Max; Eichler, Hans Joachim [Institute of Optics and Atomic Physics, Berlin Institute of Technology (Germany); Paschenko, Vladimir [Lomonosov Moscow State University (Russian Federation); Renger, Gernot [Max-Vollmer Laboratory for Biophysical Chemistry, Berlin Institute of Technology (Germany)

    2010-07-01

    A quantitative analysis of the interaction between semiconductor nanocrystals and isolated light harvesting complexes from photosynthetic organisms is of relevance for the development of biosensors with enhanced sensitivity. The present work describes results obtained on a hybrid system consisting of CdSe nanoparticles and rod shaped phycobiliproteine (PBP) antenna complexes from the cyanobacterium Acaryochloris marina. The CdSe core of the nanocrystals is covered with a ZnS shell and the surface is functionalised with anions of dihydrolipoic acid leading to electrostatic coupling to the PBPs. The measured time resolved and time integrated fluorescence spectra can be explained by a highly efficient excitation energy transfer from the nanocrystals to the PBP antenna with a time constant of about 200 ps at room temperature. At 0 C a decoupling of about 80 % of the CdSe crystals from the PBP antennae was observed. These results could be relevant for the design of switchable light harvesting systems or controlled fluorescence enhancement.

  14. Excited state energy transfer between CdSe nanocrystals and the isolated phycobiliprotein antenna of A.marina

    International Nuclear Information System (INIS)

    A quantitative analysis of the interaction between semiconductor nanocrystals and isolated light harvesting complexes from photosynthetic organisms is of relevance for the development of biosensors with enhanced sensitivity. The present work describes results obtained on a hybrid system consisting of CdSe nanoparticles and rod shaped phycobiliproteine (PBP) antenna complexes from the cyanobacterium Acaryochloris marina. The CdSe core of the nanocrystals is covered with a ZnS shell and the surface is functionalised with anions of dihydrolipoic acid leading to electrostatic coupling to the PBPs. The measured time resolved and time integrated fluorescence spectra can be explained by a highly efficient excitation energy transfer from the nanocrystals to the PBP antenna with a time constant of about 200 ps at room temperature. At 0 C a decoupling of about 80 % of the CdSe crystals from the PBP antennae was observed. These results could be relevant for the design of switchable light harvesting systems or controlled fluorescence enhancement.

  15. The experimental studies of influence of hydrogen sulfide on species of eelgrass (Zostera japonica and Zostera marina) in Padilla Bay, coastal waters of southeast Alaska conducted from 2013-06-01 to 2013-09-30 (NCEI Accession 0137907)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two species of eelgrass can be found in Padilla Bay, Washington (Zostera japonica and Zostera marina) and act as a bioindicators of ecosystem health. Many factors...

  16. Genetic variation in cultivated Rheum tanguticum populations

    Directory of Open Access Journals (Sweden)

    Yanping Hu

    2014-09-01

    Full Text Available To examine whether cultivation reduced genetic variation in the important Chinese medicinal plant Rheum tanguticum, the levels and distribution of genetic variation were investigated using ISSR markers. Fifty-eight R. tanguticum individuals from five cultivated populations were studied. Thirteen primers were used and a total of 320 DNA bands were scored. High levels of genetic diversity were detected in cultivated R. tanguticum (PPB = 82.19, H = 0.2498, H B = 0.3231, I = 0.3812 and could be explained by the outcrossing system, as well as long-lived and human-mediated seed exchanges. Analysis of molecular variance (AMOVA showed that more genetic variation was found within populations (76.1% than among them (23.9%. This was supported by the coefficient of gene differentiation (Gst = 0.2742 and Bayesian analysis (θB = 0.1963. The Mantel test revealed no significant correlation between genetic and geographic distances among populations (r = 0.1176, p = 0.3686. UPGMA showed that the five cultivated populations were separated into three clusters, which was in good accordance with the results provided by the Bayesian software STRUCTURE (K = 3. A short domestication history and no artificial selection may be an effective way of maintaining and conserving the gene pools of wild R. tanguticum.

  17. Acculturation, Cultivation, and Daytime TV Talk Shows.

    Science.gov (United States)

    Woo, Hyung-Jin; Dominick, Joseph R.

    2003-01-01

    Explores the cultivation phenomenon among international college students in the United States by examining the connection between levels of acculturation, daytime TV talk show viewing, and beliefs about social reality. Finds that students who scored low on acculturation and watched a great deal of daytime talk shows had a more negative perception…

  18. Cultivating Technological Innovation in the Mind

    Directory of Open Access Journals (Sweden)

    PROF ANYATA BENEDICT U.(Ph.D

    2015-11-01

    Full Text Available Cultivating innovation in the mind is imperative to successfully move technology to the next level. Technology is growing rapidly in developed countries and has almost reached its peak. Developing countries and continents like Africa on the other hand are now seen as a breeding ground to explore in technological innovation. Researchers and entrepreneurs are shifting base to Africa where they can achieve maximum profit resulting from under development of the continent. Reefs, city and web are used to explain the best way to cultivate innovation. The city and web are such engines of new innovation because both environments are powerfully suited for the creation, diffusion and adoption of good ideas. The seven keys of cultivating innovation include tropical humidity, illiteracy, poor power surge of electronic use for research, good concept of the liquid networks, slow hunches, serendipity, acceptance of error in cultivating innovation, Exaptation, coffee breaks, application of programming interface and the use of quadrant as a tool. These keys are recommended to be put to use by every individual who has the mindset of driving technological innovation to the next level.

  19. Pepsin homologues in bacteria

    Directory of Open Access Journals (Sweden)

    Bateman Alex

    2009-09-01

    Full Text Available Abstract Background Peptidase family A1, to which pepsin belongs, had been assumed to be restricted to eukaryotes. The tertiary structure of pepsin shows two lobes with similar folds and it has been suggested that the gene has arisen from an ancient duplication and fusion event. The only sequence similarity between the lobes is restricted to the motif around the active site aspartate and a hydrophobic-hydrophobic-Gly motif. Together, these contribute to an essential structural feature known as a psi-loop. There is one such psi-loop in each lobe, and so each lobe presents an active Asp. The human immunodeficiency virus peptidase, retropepsin, from peptidase family A2 also has a similar fold but consists of one lobe only and has to dimerize to be active. All known members of family A1 show the bilobed structure, but it is unclear if the ancestor of family A1 was similar to an A2 peptidase, or if the ancestral retropepsin was derived from a half-pepsin gene. The presence of a pepsin homologue in a prokaryote might give insights into the evolution of the pepsin family. Results Homologues of the aspartic peptidase pepsin have been found in the completed genomic sequences from seven species of bacteria. The bacterial homologues, unlike those from eukaryotes, do not possess signal peptides, and would therefore be intracellular acting at neutral pH. The bacterial homologues have Thr218 replaced by Asp, a change which in renin has been shown to confer activity at neutral pH. No pepsin homologues could be detected in any archaean genome. Conclusion The peptidase family A1 is found in some species of bacteria as well as eukaryotes. The bacterial homologues fall into two groups, one from oceanic bacteria and one from plant symbionts. The bacterial homologues are all predicted to be intracellular proteins, unlike the eukaryotic enzymes. The bacterial homologues are bilobed like pepsin, implying that if no horizontal gene transfer has occurred the duplication

  20. The MARINA Risk Assessment Strategy: A Flexible Strategy for Efficient Information Collection and Risk Assessment of Nanomaterials

    Directory of Open Access Journals (Sweden)

    Peter M. J. Bos

    2015-11-01

    Full Text Available An engineered nanomaterial (ENM may actually consist of a population of primary particles, aggregates and agglomerates of various sizes. Furthermore, their physico-chemical characteristics may change during the various life-cycle stages. It will probably not be feasible to test all varieties of all ENMs for possible health and environmental risks. There is therefore a need to further develop the approaches for risk assessment of ENMs. Within the EU FP7 project Managing Risks of Nanoparticles (MARINA a two-phase risk assessment strategy has been developed. In Phase 1 (Problem framing a base set of information is considered, relevant exposure scenarios (RESs are identified and the scope for Phase 2 (Risk assessment is established. The relevance of an RES is indicated by information on exposure, fate/kinetics and/or hazard; these three domains are included as separate pillars that contain specific tools. Phase 2 consists of an iterative process of risk characterization, identification of data needs and integrated collection and evaluation of data on the three domains, until sufficient information is obtained to conclude on possible risks in a RES. Only data are generated that are considered to be needed for the purpose of risk assessment. A fourth pillar, risk characterization, is defined and it contains risk assessment tools. This strategy describes a flexible and efficient approach for data collection and risk assessment which is essential to ensure safety of ENMs. Further developments are needed to provide guidance and make the MARINA Risk Assessment Strategy operational. Case studies will be needed to refine the strategy.

  1. Consumers' risk elimination in fuel supply chain. The Attica's Marinas yacht fuelling case study

    Energy Technology Data Exchange (ETDEWEB)

    Liapis, Nikolaos [ELINOIL-HELLENIC PETROLEUM COMPANY, S.A., Kifisia (Greece); Zannikos, Fanourios [National Technical Univ. of Athens (Greece). Lab. of Fuels Technology and Lubricants

    2013-06-01

    Oil products distribution system is a complicated supply chain and includes a lot of uncertainties. A limited but quite interesting part of this system is yachting supply in marinas. Yachts usually are equipped with high efficiency and big horsepower modem engines; sea travelling is risky itself so fuel quality contributes significant in safety; many of the yachts are chartered for hired cruises and so operators have the right to purchase tax-free marine diesel, which creates conditions for smuggling and adulteration. All above create a great need for quality control in these fuels, as Greek oil companies do not apply at the moment Total Quality Management (TQM) for securing both quality specifications and quantity paid by the end user. In this research project the Laboratory of Fuel Technology and Lubricants of NTUA collected samples and analysed fuels delivered by tank trucks to yachts in six marinas in the district of Attica. These fuels were marketed by ELINOIL SA, a medium size oil distribution company, operating in Greece. ELINOIL has a market share of 6% of the Greek fuel market but is a market leader in yachting supply in Attica, having more than 50% of the specific market. Problems concerning fuel quality were analysed, direct or indirect causes were tracked, recorded and analysed, always in comparison with data from other Quality Control procedures applied from the company. A specially developed database was updated with facts and figures from incidents and quality issues covering this activity of the company during this period. The project, as it was targeted, detected the quality problems of the specific supply chain and ended to suggestions concerning the building of Quality Assurance System in yachting fuel supply. (orig.)

  2. The effects of coal dust on photosynthetic performance of the mangrove, Avicennia marina in Richards Bay, South Africa

    International Nuclear Information System (INIS)

    Richards Bay, on the northern KwaZulu-Natal coast, is the largest coal exporting port in South Africa. The coal is stored at the Richards Bay Coal Terminal (RBCT) prior to export. Dust from coal operations is a major problem in the Richards Bay area. In this study, we tested the hypothesis that coal dust adversely affects photosynthetic performance of Avicennia marina (Forssk.) Vierh., the dominant mangrove species in the harbour. Photosynthetic performance was determined on 10 trees by measuring carbon dioxide uptake and chlorophyll fluorescence parameters at two elevation sites and on upper and lower leaf surfaces that were covered or uncovered with coal dust. Measurements were made on five clear, sunny days at saturating light (>1000 μmol m-2s-1) and high temperature (28-30 deg. C). Coal dust significantly reduced carbon dioxide exchange of upper and lower leaf surfaces by 17-39%, the reduction being generally greater on the lower leaf surface that is covered by a dense mat of trichomes and salt glands. The reduction in carbon dioxide exchange by coal dust was higher at the high elevation site that supported isolated dwarfed trees. The chlorophyll fluorescence data indicated that leaves coated with dust exhibited significantly lower photosystem II (PS II) quantum yield, lower electron transport rate (ETR) through PSII and reduced quantum efficiency of PSII (FvFm). The chlorophyll fluorescence data supported the gas exchange measurements and are consistent with reduced photosynthetic performance of leaves coated with coal dust. - Coal dust reduced photosynthetic performance of the mangrove, Avicennia marina

  3. Evidence for strain-specific exometabolomic responses of the coccolithophore Emiliania huxleyi to grazing by the dinoflagellate Oxyrrhis marina.

    Directory of Open Access Journals (Sweden)

    Kelsey L Poulson-Ellestad

    2016-01-01

    Full Text Available The coccolithophore Emiliania huxleyi forms massive blooms and plays a critical role in global elemental cycles, sequestering significant amounts of atmospheric carbon dioxide on geological time scales via production of calcium carbonate coccoliths and emitting dimethyl sulfoniopropionate (DMSP which has the potential for increasing atmospheric albedo. Because grazing in pelagic systems is a major top-down force structuring microbial communities, the influence of grazers on E. huxleyi populations has been of interest to researchers. Roles of DMSP (and related metabolites in interactions between E. huxleyi and protist grazers have been investigated, however, little is known about the release of other metabolites that may influence, or be influenced by, such grazing interactions. We used high-resolution mass spectrometry in an untargeted approach to survey the suite of low molecular weight compounds released by four different E. huxleyi strains in response to grazing by the dinoflagellate Oxyrrhis marina. Overall, a strikingly small number of metabolites were detected from E. huxleyi and O. marina cells, but these were distinctly informative to construct metabolic footprints. At most, E. huxleyi strains shared 25% of released metabolites. Furthermore, there appeared to be no unified metabolic response in E. huxleyi strains to grazing; rather these responses were strain specific. Concentrations of several metabolites also positively correlated with grazer activities, including grazing, ingestion, and growth rates; however, no single metabolite responded uniformly across all strains of E. huxleyi tested. Regardless, grazing clearly transformed the constituents of dissolved organic matter produced by these marine microbes. This study addresses several technical challenges, and presents a platform to further study the influence of chemical cues in aquatic systems and demonstrates the impact of strain diversity and grazing on the complexity of

  4. FACILITIES PLANNING WORKSHOP FOR BLASTING SUPPORT THE ACTIVITY OF DEVELOPMENT AND REPAIR SHIP IN PT. JASA MARINA INDAH UNIT II

    Directory of Open Access Journals (Sweden)

    Samuel Samuel

    2012-07-01

    Full Text Available Blasting in the process of planning the workshop production of new building and ship repair to play a role in providing blasting and paint on the block that will be of erection. As a result of blasting workshop facilities that do not have resulted in low production capacity that can be achieved by this workshop, namely three block ships per month. Capacity blasting and paint shop in this low resulted in low productivity process stage (stage the previous workshops which of course result in a decrease in vessel productivity in general.                 In penelitiaan aims to plan for blasting and paint shop facility which has been adjusted to the planned production capacity of PT. JASA MARINA INDAH II units.                 In this study it - thing to note is to understand the data - the data field for research conducted in terms of both technical and economic terms, with the blasting and paint shop facilities on the construction or repair of ships that have been planned, then the effectiveness of the work and production flow at. Jasa Marina Indah II units can be known.                 Based on the analysis and calculation of both technical and economical it can be identified by the workshop on the process of blasting Blasting efficiency is obtained for 2.55 hours, at 10.16 hours during the painting process, while economical in terms of labor costs can be reduced blasting cost is Rp.930000    for          paint       and         Rp.1.23million

  5. Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon

    Science.gov (United States)

    Bessa-Silva, Adam Rick; Vallinoto, Marcelo; Sodré, Davidson; da Cunha, Divino Bruno; Hadad, Dante; Asp, Nils Edvin; Sampaio, Iracilda; Schneider, Horacio; Sequeira, Fernando

    2016-01-01

    The Amazonian coast has several unique geological characteristics resulting from the interaction between drainage pattern of the Amazon River and the Atlantic Ocean. It is one of the most extensive and sedimentologically dynamic regions of the world, with a large number of continental islands mostly formed less than 10,000 years ago. The natural distribution of the cane toad (Rhinella marina), one of the world’s most successful invasive species, in this complex Amazonian system provides an intriguing model for the investigation of the effects of isolation or the combined effects of isolation and habitat dynamic changes on patterns of genetic variability and population differentiation. We used nine fast-evolving microsatellite loci to contrast patterns of genetic variability in six coastal (three mainlands and three islands) populations of the cane toad near the mouth of the Amazon River. Results from Bayesian multilocus clustering approach and Discriminant Analyses of Principal Component were congruent in showing that each island population was genetically differentiated from the mainland populations. All FST values obtained from all pairwise comparisons were significant, ranging from 0.048 to 0.186. Estimates of both recent and historical gene flow were not significantly different from zero across all population pairs, except the two mainland populations inhabiting continuous habitats. Patterns of population differentiation, with a high level of population substructure and absence/restricted gene flow, suggested that island populations of R. marina are likely isolated since the Holocene sea-level rise. However, considering the similar levels of genetic variability found in both island and mainland populations, it is reliable to assume that they were also isolated for longer periods. Given the genetic uniqueness of each cane toad population, together with the high natural vulnerability of the coastal regions and intense human pressures, we suggest that these

  6. Studies Of Secondary Metabolites In Two Marin Bacteria Cultivated Under Different Conditions

    OpenAIRE

    Valde, Marte

    2011-01-01

    This work has focused on the identification of secondary metabolites possessing antibacterial activity in two isolates collected from the Trondheim fjord. The isolate MP 113-05 was collected from a sponge at 60 meters depth. Trough 16S rDNA analysis it was found to be a completely novel actinobacterium belonging to the family Streptomycetaceae. MP 131-18, collected from sediment sample at 450 meters depth, was found to belong to the genus Streptomyces. Gene clusters for secondary metabolite b...

  7. Cultivation of lipid-producing bacteria with lignocellulosic biomass: effects of inhibitory compounds of lignocellulosic hydrolysates.

    Science.gov (United States)

    Wang, Baixin; Rezenom, Yohannes H; Cho, Kun-Ching; Tran, Janessa L; Lee, Do Gyun; Russell, David H; Gill, Jason J; Young, Ryland; Chu, Kung-Hui

    2014-06-01

    Lignocellulosic biomass has been recognized as a promising feedstock for the fermentative production of biofuel. However, the pretreatment of lignocellulose generates a number of by-products, such as furfural, 5-hydroxylmethyl furfural (5-HMF), vanillin, vanillic acids and trans-p-coumaric acid (TPCA), which are known to inhibit microbial growth. This research explores the ability of Rhodococcus opacus PD630 to use lignocellulosic biomass for production of triacylglycerols (TAGs), a common lipid raw material for biodiesel production. This study reports that R. opacus PD630 can grow well in R2A broth in the presence of these model inhibitory compounds while accumulating TAGs. Furthermore, strain PD630 can use TPCA, vanillic acid, and vanillin as carbon sources, but can only use TPCA and vanillic acid for TAG accumulation. Strain PD630 can also grow rapidly on the hydrolysates of corn stover, sorghum, and grass to accumulate TAGs, suggesting that strain PD630 is well-suited for bacterial lipid production from lignocellulosic biomass. PMID:24698742

  8. Deforestation and cultivation mobilize mercury from topsoil.

    Science.gov (United States)

    Gamby, Rebecca L; Hammerschmidt, Chad R; Costello, David M; Lamborg, Carl H; Runkle, James R

    2015-11-01

    Terrestrial biomass and soils are a primary global reservoir of mercury (Hg) derived from natural and anthropogenic sources; however, relatively little is known about the fate and stability of Hg in the surface soil reservoir and its susceptibility to change as a result of deforestation and cultivation. In southwest Ohio, we measured Hg concentrations in soils of deciduous old- and new-growth forests, as well as fallow grassland and agricultural soils that had once been forested to examine how, over decadal to century time scales, man-made deforestation and cultivation influence Hg mobility from temperate surface soils. Mercury concentrations in surficial soils were significantly greater in the old-growth than new-growth forest, and both forest soils had greater Hg concentrations than cultivated and fallow fields. Differences in Hg:lead ratios between old-growth forest and agricultural topsoils suggest that about half of the Hg lost from deforested and cultivated Ohio soils may have been volatilized and the other half eroded. The estimated mobilization potential of Hg as a result of deforestation was 4.1 mg m(-2), which was proportional to mobilization potentials measured at multiple locations in the Amazon relative to concentrations in forested surface soils. Based on this relationship and an estimate of the global average of Hg concentrations in forested soils, we approximate that about 550 M mol of Hg has been mobilized globally from soil as a result of deforestation during the past two centuries. This estimate is comparable to, if not greater than, the amount of anthropogenic Hg hypothesized by others to have been sequestered by the soil reservoir since Industrialization. Our results suggest that deforestation and soil cultivation are significant anthropogenic processes that exacerbate Hg mobilization from soil and its cycling in the environment. PMID:26100725

  9. Deforestation, forest fallowing, and soil conservation in shifting cultivation

    OpenAIRE

    2013-01-01

    To design effective policies for rainforest conservation in shifting cultivation systems, it is crucial to have a better understanding of shifting cultivators f decision making. This paper develops a unified dynamic farm model of shifting cultivation, addressing two lacunae in extant theoretical works: taking into account differences between primary and secondary forests and potential roles of on-farm soil conservation. The model unifies shifting cultivator fs decisions about primary-forest c...

  10. Bacteria counting method based on polyaniline/bacteria thin film.

    Science.gov (United States)

    Zhihua, Li; Xuetao, Hu; Jiyong, Shi; Xiaobo, Zou; Xiaowei, Huang; Xucheng, Zhou; Tahir, Haroon Elrasheid; Holmes, Mel; Povey, Malcolm

    2016-07-15

    A simple and rapid bacteria counting method based on polyaniline (PANI)/bacteria thin film was proposed. Since the negative effects of immobilized bacteria on the deposition of PANI on glass carbon electrode (GCE), PANI/bacteria thin films containing decreased amount of PANI would be obtained when increasing the bacteria concentration. The prepared PANI/bacteria film was characterized with cyclic voltammetry (CV) technique to provide quantitative index for the determination of the bacteria count, and electrochemical impedance spectroscopy (EIS) was also performed to further investigate the difference in the PANI/bacteria films. Good linear relationship of the peak currents of the CVs and the log total count of bacteria (Bacillus subtilis) could be established using the equation Y=-30.413X+272.560 (R(2)=0.982) over the range of 5.3×10(4) to 5.3×10(8)CFUmL(-1), which also showed acceptable stability, reproducibility and switchable ability. The proposed method was feasible for simple and rapid counting of bacteria. PMID:26921555

  11. Evaluation of High Density Algal Cultivation for Secondary Wastewater Polishing.

    Science.gov (United States)

    Xu, Meng; Xu, Shengnan; Bernards, Matthew; Hu, Zhiqiang

    2016-01-01

    This study evaluated the performance of an algal membrane bioreactor (A-MBR) for secondary wastewater effluent polishing and determined the membrane fouling behavior and dominance of algae in the A-MBR. The continuous flow A-MBR (effective volume = 7.2 L) was operated with low biomass wastage for more than 180 days, resulting in an average algal mixed liquor suspended solid concentration of 4922 mg/L. At the influent concentrations of 43 mg/L COD, 1.6 mg/L total phosphorus (TP), and 11.8 mg/L total nitrogen (TN), the effluent COD, TP and TN concentrations were 26 ± 6 mg/L, 0.7 ± 0.3 mg/L, and 9.6 ± 1.2 mg/L, respectively. High-density algae cultivation facilitated P adsorption and chemical precipitation. However, the TN removal efficiency was only 14% because of low biomass wastage. Although bacteria represented less than 2% of the total biomass in the A-MBR, bacterial growth in the secondary wastewater effluent accelerated membrane fouling. PMID:26803026

  12. RNA synthesis in newly isolated and cultivated mesophyll protoplasts

    Energy Technology Data Exchange (ETDEWEB)

    Paszkowski, J.; Kleczkowski, K.

    1979-01-01

    Tobacco leaf mesophyll protoplasts exhibit low incorporation of (3H)uridine and 32P into RNA, up to 12 h of cultivation, irrespective of the presence of phytohormones. After 24 h of cultivation a dramatic increase in RNA synthesis is observed. The protoplasts cultivated in the absence of phytohormones show lower incorporation of precursors.

  13. Antibacterial and biofilm inhibitory activities of bacteria associated with polychaetes

    Directory of Open Access Journals (Sweden)

    Chellamnadar Vaikundavasagom Sunjaiy Shankar

    2015-06-01

    Full Text Available Objective: To study the antibacterial and antibiofilm activities expressed by epibiotic bacteria associated with the polychaetes Platynereis dumerilii and Syllis sp. Methods: A total of 32 cultivable bacterial strains were isolated from the two polychaete species. The crude extracts were tested for antibacterial activity and biofilm inhibitory activity against pathogenic and biofilm-forming bacterial strains. Extracts of the strains which showed strong activity were analyzed by thin-layer chromatography (TLC and the bacterial strains were identified based on 16S rRNA gene sequencing. Results: Extracts of 13 bacterial strains showed inhibitory activity against pathogenic and biofilm-forming bacteria. The crude extracts also affected the synthesis of extracellular polymeric substances and cell surface hydrophobicity of the Alteromonas sp. isolated from marine biofilm. The adhesion of Alteromonas sp. on glass surface showed significant variation between surface-associated bacterial crude extract treatment and control groups. Among the 13 bacteria, two strains PA8 and PA19 were further analyzed for bioactive fractions. Thinlayer chromatography indicated the presence of a single active fraction in the crude extract of both the bacterial strains. The epibiotic bacterial strains P8 and P19 were identified as Exiguobacterium sp. and Actinobacterium sp. respectively based on 16S rRNA gene sequencing. Conclusions: The present study indicates that bacteria associated with marine invertebrates inhabiting the coastal waters could be used as a potential source for the isolation of bioactive metabolites.

  14. Number of Microorganisms in the Soil Cultivated with Legume-Grass Mixtures Supplied with Phytohormones and Nitrogen

    Directory of Open Access Journals (Sweden)

    Jacek SOSNOWSKI

    2014-12-01

    Full Text Available The study concerned the number of microorganisms colonizing the humus layer and under plough soil from the cultivation of perennial ryegrass mixtures with red clover, which were fed by biostimulant based on the phytohormones  and different doses of nitrogen. Nitrogen was applied at four levels-control (no nitrogen, 50, 100 and 150 kg N∙ha-1, biostimulant in two combinations - with and without preparation. Soil material to assess the size of individual groups of microorganisms was collected from each experimental plot in autumn 2010 from the humus (0-20 cm and under plough layers (20-40 cm. The analysis of soil samples for a total number of bacteria, actinomycetes and fungi was conducted at the Department of Agricultural Microbiology IUNG-PIB in Pulawy. Results of studies have shown that more colonies of bacteria, actinomycetes and fungi were colonized the humus horizon. Biostimulant application in this cultivation led to a decrease of the total number of colonies of the all soil microorganisms groups but improved the ratio of bacteria to fungi. Increasing doses of mineral nitrogen by the limiting of the bacteria number and intensive development of soil fungi, helped to narrow the B/F ratio.

  15. Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants

    DEFF Research Database (Denmark)

    Currie, Cameron R; Poulsen, Michael; Mendenhall, John;

    2006-01-01

    Attine ants engage in a quadripartite symbiosis with fungi they cultivate for food, specialized garden parasites, and parasite-inhibiting bacteria. Molecular phylogenetic evidence supports an ancient host-pathogen association between the ant-cultivar mutualism and the garden parasite. Here we show...... that ants rear the antibiotic-producing bacteria in elaborate cuticular crypts, supported by unique exocrine glands, and that these structures have been highly modified across the ants' evolutionary history. This specialized structural evolution, together with the absence of these bacteria and...... modifications in other ant genera that do not grow fungus, indicate that the bacteria have an ancient and coevolved association with the ants, their fungal cultivar, and the garden parasite....

  16. Isolation and Characterisation of Diazotrophic Bacteria from Rhizosphere of Different Rice Cultivars of South Assam, India

    Directory of Open Access Journals (Sweden)

    FOLGUNI LASKAR

    2013-04-01

    Full Text Available Free living heterotrophic bacteria were isolated from the rhizosphere of 10 local and cultivated varieties of rice grown in Karimganj district of South Assam. Among the 25 isolates, 11 isolates withplant growth promoting activity were identified based on phenotypic and 16S rDNA sequence analysis. The strains were identified as Shingomonasazotifigens, Pseudomonas putida, Stenotrophomonasmaltophila,Acinetobacterradioresistance, Alkaligenesfaecalis, Enterobactercloaceae subsp. dissolvens, Pantoeaagglomerans, Klebsiellapneumoneae, Achromobacterxyloxidans, Herbispirillumrubrisubalbicans and Herbispirillum sp . The efficient strains are isolated from the local varieties of rice plant. The isolate KR-23 ( Sphingomonasazotifigens was a novel bacteria reported for the first time as nitrogen fixing bacteria from India. The nitrogen fixing ability along with IAA production, ACC deaminase activity and P-solubilisation by the bacteria has shown their potential for plant-growth-promoting rhizobacteria. KR-6( Stenotrophomonasmaltophila and KR-7( Herbispirillumrubrisubalbicans have been reported earlier as plant pathogensbut theyhave shown a high potential for nitrogen fixing and auxin producing activity in the present study

  17. Piezophilic Bacteria Isolated from Sediment of the Shimokita Coalbed, Japan

    Science.gov (United States)

    Fang, J.; Kato, C.; Hori, T.; Morono, Y.; Inagaki, F.

    2013-12-01

    The Earth is a cold planet as well as pressured planet, hosting both the surface biosphere and the deep biosphere. Pressure ranges over four-orders of magnitude in the surface biosphere and probably more in the deep biosphere. Pressure is an important thermodynamic property of the deep biosphere that affects microbial physiology and biochemistry. Bacteria that require high-pressure conditions for optimal growth are called piezophilic bacteria. Subseafloor marine sediments are one of the most extensive microbial habitats on Earth. Marine sediments cover more than two-thirds of the Earth's surface, and represent a major part of the deep biosphere. Owing to its vast size and intimate connection with the surface biosphere, particularly the oceans, the deep biosphere has enormous potential for influencing global-scale biogeochemical processes, including energy, climate, carbon and nutrient cycles. Therefore, studying piezophilic bacteria of the deep biosphere has important implications in increasing our understanding of global biogeochemical cycles, the interactions between the biosphere and the geosphere, and the evolution of life. Sediment samples were obtained during IODP Expedition 337, from 1498 meters below sea floor (mbsf) (Sample 6R-3), 1951~1999 mbsf (19R-1~25R-3; coalbed mix), and 2406 mbsf (29R-7). The samples were mixed with MB2216 growth medium and cultivated under anaerobic conditions at 35 MPa (megapascal) pressure. Growth temperatures were adjusted to in situ environmental conditions, 35°C for 6R-3, 45°C for 19R-1~25R-3, and 55°C for 29R-7. The cultivation was performed three times, for 30 days each time. Microbial cells were obtained and the total DNA was extracted. At the same time, isolation of microbes was also performed under anaerobic conditions. Microbial communities in the coalbed sediment were analyzed by cloning, sequencing, and terminal restriction fragment length polymorphism (t-RFLP) of 16S ribosomal RNA genes. From the partial 16S r

  18. Fungi and bacteria involved in desert varnish formation

    Science.gov (United States)

    Taylor-George, S.; Palmer, F.; Staley, J. T.; Curtiss, B.; Adams, J. B.; Borns, D. J.

    1983-01-01

    Desert varnish is a coating of ferromanganese oxides and clays that develops on rock surfaces in arid to semi-arid regions. Active respiration but not photosynthesis was detected on varnished rock surfaces from the Sonoran Desert. Light microscopy, scanning electron microscopy (SEM) and transmission electron microscopy (TEM) observations, and cultivation experiments indicate that both fungi, primarily dematiaceous hyphomycetes, and bacteria are found on and within desert varnish coatings from the arid regions studied. Some fungi grow as microcolonial fungi (MCF) on rocks, and microscopic observations suggest MCF become incorporated in the varnish coating. SEM-EDAX (energy dispersive X-ray systems) analyses indicate the MCF contain 3 of the characteristic elements of varnish: iron, aluminum, and silicon. In some locations, MCF are also enriched in manganese relative to the rock substratum. Furthermore, some of the dematiaceous hyphomycetes that have been cultivated are able to oxidize manganese under laboratory conditions. It is possible that manganese-oxidizing bacteria, which are found in varnish, also play an important role in varnish formation.

  19. Beneficial bacteria inhibit cachexia.

    Science.gov (United States)

    Varian, Bernard J; Goureshetti, Sravya; Poutahidis, Theofilos; Lakritz, Jessica R; Levkovich, Tatiana; Kwok, Caitlin; Teliousis, Konstantinos; Ibrahim, Yassin M; Mirabal, Sheyla; Erdman, Susan E

    2016-03-15

    Muscle wasting, known as cachexia, is a debilitating condition associated with chronic inflammation such as during cancer. Beneficial microbes have been shown to optimize systemic inflammatory tone during good health; however, interactions between microbes and host immunity in the context of cachexia are incompletely understood. Here we use mouse models to test roles for bacteria in muscle wasting syndromes. We find that feeding of a human commensal microbe, Lactobacillus reuteri, to mice is sufficient to lower systemic indices of inflammation and inhibit cachexia. Further, the microbial muscle-building phenomenon extends to normal aging as wild type animals exhibited increased growth hormone levels and up-regulation of transcription factor Forkhead Box N1 [FoxN1] associated with thymus gland retention and longevity. Interestingly, mice with a defective FoxN1 gene (athymic nude) fail to inhibit sarcopenia after L. reuteri therapy, indicating a FoxN1-mediated mechanism. In conclusion, symbiotic bacteria may serve to stimulate FoxN1 and thymic functions that regulate inflammation, offering possible alternatives for cachexia prevention and novel insights into roles for microbiota in mammalian ontogeny and phylogeny. PMID:26933816

  20. Lactic Acid Bacteria

    Directory of Open Access Journals (Sweden)

    ToddKlaenhammer

    2013-04-01

    Full Text Available Lactic acid bacteria (LAB are a diverse group of Gram-positive bacteria found in a vast array of environments including dairy products and the human gastrointestinal tract. In both niches, surface proteins play a crucial role in mediating interactions with the surrounding environment. The sortase enzyme is responsible for covalently coupling a subset of surface dependent proteins (SDPs to the cell wall of Gram-positive organisms through recognition of a conserved C-terminal LPXTG motif. Genomic sequencing of LAB and annotation has allowed for the identification of sortase and SDPs. Historically, sortase and SDPs were predominately investigated for their role in mediating pathogenesis. Identification of these proteins in LAB has shed light on their important roles in mediating nutrient acquisition through proteinase P as well as positive probiotic attributes including adhesion, mucus barrier function, and immune signaling. Furthermore, sortase expression signals in LAB have been exploited as a means to develop oral vaccines targeted to the gastrointestinal tract. In this review, we examine the collection of studies which evaluate sortase and SDPs in select species of dairy associated and health promoting LAB.