WorldWideScience

Sample records for bacterial iron transport

  1. The Siderocalin/Enterobactin Interaction: A Link between Mammalian Immunity and Bacterial Iron Transport

    Energy Technology Data Exchange (ETDEWEB)

    Meux, Susan C.

    2008-05-12

    The siderophore enterobactin (Ent) is produced by enteric bacteria to mediate iron uptake. Ent scavenges iron and is taken up by the bacteria as the highly stable ferric complex [Fe{sup III}(Ent)]{sup 3-}. This complex is also a specific target of the mammalian innate immune system protein, Siderocalin (Scn), which acts as an anti-bacterial agent by specifically sequestering siderophores and their ferric complexes during infection. Recent literature suggesting that Scn may also be involved in cellular iron transport has increased the importance of understanding the mechanism of siderophore interception and clearance by Scn; Scn is observed to release iron in acidic endosomes and [Fe{sup III}(Ent)]{sup 3-} is known to undergo a change from catecholate to salicylate coordination in acidic conditions, which is predicted to be sterically incompatible with the Scn binding pocket (also referred to as the calyx). To investigate the interactions between the ferric Ent complex and Scn at different pH values, two recombinant forms of Scn with mutations in three residues lining the calyx were prepared: Scn-W79A/R81A and Scn-Y106F. Binding studies and crystal structures of the Scn-W79A/R81A:[Fe{sup III}(Ent)]{sup 3-} and Scn-Y106F:[Fe{sup III}(Ent)]{sup 3-} complexes confirm that such mutations do not affect the overall conformation of the protein but do weaken significantly its affinity for [Fe{sup III}(Ent)]{sup 3-}. Fluorescence, UV-Vis and EXAFS spectroscopies were used to determine Scn/siderophore dissociation constants and to characterize the coordination mode of iron over a wide pH range, in the presence of both mutant proteins and synthetic salicylate analogs of Ent. While Scn binding hinders salicylate coordination transformation, strong acidification results in the release of iron and degraded siderophore. Iron release may therefore result from a combination of Ent degradation and coordination change.

  2. Human iron transporters

    OpenAIRE

    Garrick, Michael D.

    2010-01-01

    Human iron transporters manage iron carefully because tissues need iron for critical functions, but too much iron increases the risk of reactive oxygen species. Iron acquisition occurs in the duodenum via divalent metal transporter (DMT1) and ferroportin. Iron trafficking depends largely on the transferrin cycle. Nevertheless, non-digestive tissues have a variety of other iron transporters that may render DMT1 modestly redundant, and DMT1 levels exceed those needed for the just-mentioned task...

  3. Iron Transport Systems in Neisseria meningitidis†

    OpenAIRE

    Perkins-Balding, Donna; Ratliff-Griffin, Melanie; Stojiljkovic, Igor

    2004-01-01

    Acquisition of iron and iron complexes has long been recognized as a major determinant in the pathogenesis of Neisseria meningitidis. In this review, high-affinity iron uptake systems, which allow meningococci to utilize the human host proteins transferrin, lactoferrin, hemoglobin, and haptoglobin-hemoglobin as sources of essential iron, are described. Classic features of bacterial iron transport systems, such as regulation by the iron-responsive repressor Fur and TonB-dependent transport act...

  4. Pharmacology of Iron Transport

    OpenAIRE

    Byrne, Shaina L.; Krishnamurthy, Divya; Wessling-Resnick, Marianne

    2012-01-01

    Elucidating the molecular basis for the regulation of iron uptake, storage, and distribution is necessary to understand iron homeostasis. Pharmacological tools are emerging to identify and distinguish among different iron transport pathways. Stimulatory or inhibitory small molecules with effects on iron uptake can help characterize the mechanistic elements of iron transport and the roles of the transporters involved in these processes. In particular, iron chelators can serve as potential phar...

  5. Liver iron transport

    Institute of Scientific and Technical Information of China (English)

    Ross M Graham; Anita CG Chua; Carly E Herbison; John K Olynyk; Debbie Trinder

    2007-01-01

    The liver plays a central role in iron metabolism. It is the major storage site for iron and also expresses a complex range of molecules which are involved in iron transport and regulation of iron homeostasis. An increasing number of genes associated with hepatic iron transport or regulation have been identified. These include transferrin receptors (TFR1 and 2), a ferrireductase (STEAP3), the transporters divalent metal transporter-1 (DMT1) and ferroportin (FPN) as well as the haemochromatosis protein, HFE and haemojuvelin (HJV),which are signalling molecules. Many of these genes also participate in iron regulatory pathways which focus on the hepatic peptide hepcidin. However, we are still only beginning to understand the complex interactions between liver iron transport and iron homeostasis. This review outlines our current knowledge of molecules of iron metabolism and their roles in iron transport and regulation of iron homeostasis.

  6. Mammalian iron transport.

    Science.gov (United States)

    Anderson, Gregory Jon; Vulpe, Christopher D

    2009-10-01

    Iron is essential for basic cellular processes but is toxic when present in excess. Consequently, iron transport into and out of cells is tightly regulated. Most iron is delivered to cells bound to plasma transferrin via a process that involves transferrin receptor 1, divalent metal-ion transporter 1 and several other proteins. Non-transferrin-bound iron can also be taken up efficiently by cells, although the mechanism is poorly understood. Cells can divest themselves of iron via the iron export protein ferroportin in conjunction with an iron oxidase. The linking of an oxidoreductase to a membrane permease is a common theme in membrane iron transport. At the systemic level, iron transport is regulated by the liver-derived peptide hepcidin which acts on ferroportin to control iron release to the plasma. PMID:19484405

  7. Transport powered by bacterial turbulence

    OpenAIRE

    Kaiser, Andreas; Peshkov, Anton; Sokolov, Andrey; ten Hagen, Borge; Löwen, Hartmut; Aranson, Igor S.

    2014-01-01

    We demonstrate that collective turbulent-like motion in a bacterial bath can power and steer directed transport of mesoscopic carriers through the suspension. In our experiments and simulations, a microwedge-like "bulldozer" draws energy from a bacterial bath of varied density. We obtain that a maximal transport speed is achieved in the turbulent state of the bacterial suspension. This apparent rectification of random motion of bacteria is caused by polar ordered bacteria inside the cusp regi...

  8. Transport Powered by Bacterial Turbulence

    Science.gov (United States)

    Kaiser, Andreas; Peshkov, Anton; Sokolov, Andrey; ten Hagen, Borge; Löwen, Hartmut; Aranson, Igor S.

    2014-04-01

    We demonstrate that collective turbulentlike motion in a bacterial bath can power and steer the directed transport of mesoscopic carriers through the suspension. In our experiments and simulations, a microwedgelike "bulldozer" draws energy from a bacterial bath of varied density. We obtain that an optimal transport speed is achieved in the turbulent state of the bacterial suspension. This apparent rectification of random motion of bacteria is caused by polar ordered bacteria inside the cusp region of the carrier, which is shielded from the outside turbulent fluctuations.

  9. Transport powered by bacterial turbulence.

    Science.gov (United States)

    Kaiser, Andreas; Peshkov, Anton; Sokolov, Andrey; ten Hagen, Borge; Löwen, Hartmut; Aranson, Igor S

    2014-04-18

    We demonstrate that collective turbulentlike motion in a bacterial bath can power and steer the directed transport of mesoscopic carriers through the suspension. In our experiments and simulations, a microwedgelike "bulldozer" draws energy from a bacterial bath of varied density. We obtain that an optimal transport speed is achieved in the turbulent state of the bacterial suspension. This apparent rectification of random motion of bacteria is caused by polar ordered bacteria inside the cusp region of the carrier, which is shielded from the outside turbulent fluctuations. PMID:24785075

  10. Bacterial siderophores efficiently provide iron to iron-starved tomato plants in hydroponics culture

    OpenAIRE

    Radzki, W.; Gutierrez Mañero, F. J.; Algar, E.; Lucas García, J. A.; García-Villaraco, A.; Ramos Solano, B.

    2013-01-01

    Iron is one of the essential elements for a proper plant development. Providing plants with an accessible form of iron is crucial when it is scant or unavailable in soils. Chemical chelates are the only current alternative and are highly stable in soils, therefore, posing a threat to drinking water. The aim of this investigation was to quantify siderophores produced by two bacterial strains and to determine if these bacterial siderophores would palliate chlorotic symptoms of iron-starved toma...

  11. Iron uptake and transport across physiological barriers.

    Science.gov (United States)

    Duck, Kari A; Connor, James R

    2016-08-01

    Iron is an essential element for human development. It is a major requirement for cellular processes such as oxygen transport, energy metabolism, neurotransmitter synthesis, and myelin synthesis. Despite its crucial role in these processes, iron in the ferric form can also produce toxic reactive oxygen species. The duality of iron's function highlights the importance of maintaining a strict balance of iron levels in the body. As a result, organisms have developed elegant mechanisms of iron uptake, transport, and storage. This review will focus on the mechanisms that have evolved at physiological barriers, such as the intestine, the placenta, and the blood-brain barrier (BBB), where iron must be transported. Much has been written about the processes for iron transport across the intestine and the placenta, but less is known about iron transport mechanisms at the BBB. In this review, we compare the established pathways at the intestine and the placenta as well as describe what is currently known about iron transport at the BBB and how brain iron uptake correlates with processes at these other physiological barriers. PMID:27457588

  12. Amorphous structure of iron oxide of bacterial origin

    International Nuclear Information System (INIS)

    In nature, there are various iron oxides produced by the water-habitant bacterial group called “iron-oxidizing bacteria”. These iron oxides have been studied mainly from biological and geochemical perspectives. Today, attempts are made to use such iron oxides as novel functional materials in several applications. However, their quantitative structural characteristics are still unclear. We studied the structure of iron oxide of microtubular form consisting of amorphous nanoparticles formed by an iron-oxidizing bacterium, Leptothrix ochracea, using a combination of high-energy X-ray diffraction and reverse Monte Carlo simulation. We found that its structure consists of a framework of corner- and edge-sharing distorted FeO6 octahedral units, while SiO4 tetrahedral units are isolated in the framework. The results reveal the atomic arrangement of iron oxide of bacterial origin, which is essential for investigating its potential as a functional material. -- Highlights: ► The amorphous structure of bacterial iron oxide was investigated. ► The structure was simulated by high-energy X-ray diffraction and reverse Monte Carlo simulation. ► The structure was constructed of a framework of corner- and edge-sharing distorted FeO6 octahedral units. ► SiO4 tetrahedral units were distributed isolatedly in the framework of FeO6 octahedral units.

  13. Iron transportation across the placenta

    Directory of Open Access Journals (Sweden)

    Claudia M. de Oliveira

    2012-12-01

    Full Text Available According to the classification of placental types among animals, the transfer of iron through the placenta can occur via: absorption connected to transferin through the outer surface of the trophoblast in direct contact with circulating maternal blood; absorption of the erythrocytes by the chorionic epithelium in direct contact with accumulation of blood extravased from haemotophagous areas; absorption by the chorionic epithelium in direct contact with iron enriched secretions from the endometrial glands and absorption by extravasations of the blood in the maternal-fetal surface and the subsequent phagocytosis of the erythrocytes by trophoblast cells described in bovine, small ruminants, canine and feline. The function of erythrophagocytosis observed after the extravasation of blood in the maternal-fetal interface is undefined in several species. Possibly, the iron is transferred to the fetus through the trophoblastic erythrophagocytosis in the hemophogous area of the placenta and also in the endometrial glands. In this literature survey, new methods of studies regarding placental transfer involving iron and other nutrients necessary for survival and maintenance of embryonic fetus to birth are proposed.De acordo com a classificação dos tipos de placenta existentes entre os animais e em relação com a passagem de substâncias pela barreira inter-hemática, a transferência de ferro pode ser realizada através da: absorção de ferro ligado a transferrina através da superfície externa do trofoblasto em contato direto com o sangue materno circulante; absorção de eritrócitos pelo epitélio coriônico em contato direto com acúmulos de sangue materno extravasado em áreas hematófagas, absorção de ferro pelo epitélio coriônico em contato direto com secreções ricas em ferro provenientes de glândulas endometriais e fagocitose dos eritrócitos pelas células trofoblásticas, a qual foi descrita em bovinos, pequenos ruminantes, caninos e

  14. Calculating iron transport in nuclear systems

    International Nuclear Information System (INIS)

    The presence of high levels of iron in the final feedwater of nuclear plants is undesirable and can have a significant contribution to plant operations and maintenance (O and M) costs. A number of options are available to reduce the iron concentration, but tend to be expensive. Recently a method was developed to quantitatively determine the contribution of each iron source, such that reduction options can be quantitatively compared. The method is based on industry experience that the majority of iron has been released by flow-accelerated corrosion (FAC). FAC is one of the most predictable forms of corrosion and a well-developed predictive model has been developed and also encoded in the CHECWORKS. A combination of CHECWORKS and supplemental calculations have been used to model the iron transport in a number of US BWRs and PWRs. The iron generated by FAC in all the normally operating piping systems has been calculated using the results of CHECWORKS predictions and a special post processor. The post processor accounts for the differences between the maximum corrosion rate calculated by CHECWORKS and the average corrosion (iron generation) rate for a pipe-fitting or length of pipe. It also calculates the amount of iron generated within the fitting or pipe. Supplemental calculations have been used to determine the iron generation from the major, in-line components - high and low pressure turbines, moisture separators, feedwater heaters and the condenser. All of the iron generation rates for the equipment and piping were appropriately summed and iron concentrations estimated throughout the steam-feedwater system. Predicted iron concentrations have agreed well with plant measurements. The availability of specific iron generation rates allows plant management to make reasoned decisions about the countermeasures to deal with iron generation and transport. The countermeasures that have been examined to reduce the amount of iron transport include installing additional water

  15. Bacterial heme-transport proteins and their heme-coordination modes

    OpenAIRE

    Tong, Yong; Guo, Maolin

    2008-01-01

    Efficient iron acquisition is critical for an invading microbe’s survival and virulence. Most of the iron in mammals is incorporated into heme, which can be plundered by certain bacterial pathogens as a nutritional iron source. Utilization of exogenous heme by bacteria involves the binding of heme or hemoproteins to the cell surface receptors, followed by the transport of heme into cells. Once taken into the cytosol, heme is presented to heme oxygenases where the tetrapyrrole ring is cleaved ...

  16. Structural transformations of heat-treated bacterial iron oxide

    International Nuclear Information System (INIS)

    A bacterial siliceous iron oxide microtubule (diameter: ca. 1 μm, 15Fe2O3·8SiO2·P2O5·30H2O) produced by Leptothrix ochracea was heat treated in air and its structural transformation was investigated in detail by microscopy, diffractometry, and spectroscopy. Although the heat-treated bacterial iron oxide retained its original microtubular structure, its nanoscopic, middle-range, and local structures changed drastically. Upon heat treatment, nanosized pores were formed and their size changed depending on temperature. The Fe–O–Si linkages were gradually cleaved with increasing temperature, causing the progressive separation of Fe and Si ions into iron oxide and amorphous silicate phases, respectively. Concomitantly, global connectivity and local structure of FeO6 octahedra in the iron oxide nanoparticles systematically changed depending on temperature. These comprehensive investigations clearly revealed various structural changes of the bacterial iron oxide which is an important guideline for the future exploration of novel bio-inspired materials. - Highlights: • Structural transformation of a bacterial iron oxide microtubule was investigated. • Si–O–Fe was cleaved with increasing temperature to form α-Fe2O3/silicate composite. • Crystallization to 2Fh started at 500 °C to give α-Fe2O3 >700 °C. • FeO6 octahedra were highly distorted <500 °C. • Formation of face-sharing FeO6 was promoted >500 °C, releasing the local strain of FeO6

  17. Structural transformations of heat-treated bacterial iron oxide

    Energy Technology Data Exchange (ETDEWEB)

    Hashimoto, Hideki, E-mail: hideki-h@cc.okayama-u.ac.jp [Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530 (Japan); JST, CREST, Okayama 700-8530 (Japan); Fujii, Tatsuo [Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530 (Japan); Kohara, Shinji [Japan Synchrotron Radiation Research Institute, Sayo, Hyogo 679-5198 (Japan); Nakanishi, Koji [Office of Society-Academia Collaboration for Innovation, Kyoto University, Uji 611-0011 (Japan); Yogi, Chihiro [SR Center, Ritsumeikan University, Kusatsu, Shiga 525-8577 (Japan); Peterlik, Herwig [Faculty of Physics, University of Vienna, A-1090 Vienna (Austria); Nakanishi, Makoto [Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530 (Japan); Takada, Jun [Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530 (Japan); JST, CREST, Okayama 700-8530 (Japan)

    2015-04-01

    A bacterial siliceous iron oxide microtubule (diameter: ca. 1 μm, 15Fe{sub 2}O{sub 3}·8SiO{sub 2}·P{sub 2}O{sub 5}·30H{sub 2}O) produced by Leptothrix ochracea was heat treated in air and its structural transformation was investigated in detail by microscopy, diffractometry, and spectroscopy. Although the heat-treated bacterial iron oxide retained its original microtubular structure, its nanoscopic, middle-range, and local structures changed drastically. Upon heat treatment, nanosized pores were formed and their size changed depending on temperature. The Fe–O–Si linkages were gradually cleaved with increasing temperature, causing the progressive separation of Fe and Si ions into iron oxide and amorphous silicate phases, respectively. Concomitantly, global connectivity and local structure of FeO{sub 6} octahedra in the iron oxide nanoparticles systematically changed depending on temperature. These comprehensive investigations clearly revealed various structural changes of the bacterial iron oxide which is an important guideline for the future exploration of novel bio-inspired materials. - Highlights: • Structural transformation of a bacterial iron oxide microtubule was investigated. • Si–O–Fe was cleaved with increasing temperature to form α-Fe{sub 2}O{sub 3}/silicate composite. • Crystallization to 2Fh started at 500 °C to give α-Fe{sub 2}O{sub 3} >700 °C. • FeO{sub 6} octahedra were highly distorted <500 °C. • Formation of face-sharing FeO{sub 6} was promoted >500 °C, releasing the local strain of FeO{sub 6}.

  18. Bacterial siderophores efficiently provide iron to iron-starved tomato plants in hydroponics culture.

    Science.gov (United States)

    Radzki, W; Gutierrez Mañero, F J; Algar, E; Lucas García, J A; García-Villaraco, A; Ramos Solano, B

    2013-09-01

    Iron is one of the essential elements for a proper plant development. Providing plants with an accessible form of iron is crucial when it is scant or unavailable in soils. Chemical chelates are the only current alternative and are highly stable in soils, therefore, posing a threat to drinking water. The aim of this investigation was to quantify siderophores produced by two bacterial strains and to determine if these bacterial siderophores would palliate chlorotic symptoms of iron-starved tomato plants. For this purpose, siderophore production in MM9 medium by two selected bacterial strains was quantified, and the best was used for biological assay. Bacterial culture media free of bacteria (S) and with bacterial cells (BS), both supplemented with Fe were delivered to 12-week-old plants grown under iron starvation in hydroponic conditions; controls with full Hoagland solution, iron-free Hoagland solution and water were also conducted. Treatments were applied twice along the experiment, with a week in between. At harvest, plant yield, chlorophyll content and nutritional status in leaves were measured. Both the bacterial siderophore treatments significantly increased plant yield, chlorophyll and iron content over the positive controls with full Hoagland solution, indicating that siderophores are effective in providing Fe to the plant, either with or without the presence of bacteria. In summary, siderophores from strain Chryseobacterium C138 are effective in supplying Fe to iron-starved tomato plants by the roots, either with or without the presence of bacteria. Based on the amount of siderophores produced, an effective and economically feasible organic Fe chelator could be developed. PMID:23812968

  19. Bacterial Growth in Amniotic Fluid Is Dependent on the Iron-Availability and the Activity of Bacterial Iron-Uptake System

    OpenAIRE

    Ahn, Young-Joon; Park, Sang-Kee; Oh, Jae-Wook; Sun, Hui-Yu; Shin, Sung-Heui

    2004-01-01

    In the present study, the relationship among iron-availability, antibacterial activity, role of meconium as an iron source and the activity of bacterial iron-uptake system (IUS) for bacterial growth in amniotic fluid (AF) were investigated. Staphylococcus aureus ATCC 6538 and its streptonigrin-resistant (SR) mutant with defective IUS were used as the test strains. The growth of S. aureus in AF was stimulated dosedependently by addition of meconium. Bacterial growth stimulated by meconium was ...

  20. Iron Limitation Triggers Early Egress by the Intracellular Bacterial Pathogen Legionella pneumophila.

    Science.gov (United States)

    O'Connor, Tamara J; Zheng, Huaixin; VanRheenen, Susan M; Ghosh, Soma; Cianciotto, Nicholas P; Isberg, Ralph R

    2016-08-01

    Legionella pneumophila is an intracellular bacterial pathogen that replicates in alveolar macrophages, causing a severe form of pneumonia. Intracellular growth of the bacterium depends on its ability to sequester iron from the host cell. In the L. pneumophila strain 130b, one mechanism used to acquire this essential nutrient is the siderophore legiobactin. Iron-bound legiobactin is imported by the transport protein LbtU. Here, we describe the role of LbtP, a paralog of LbtU, in iron acquisition in the L. pneumophila strain Philadelphia-1. Similar to LbtU, LbtP is a siderophore transport protein and is required for robust growth under iron-limiting conditions. Despite their similar functions, however, LbtU and LbtP do not contribute equally to iron acquisition. The Philadelphia-1 strain lacking LbtP is more sensitive to iron deprivation in vitro Moreover, LbtP is important for L. pneumophila growth within macrophages while LbtU is dispensable. These results demonstrate that LbtP plays a dominant role over LbtU in iron acquisition. In contrast, loss of both LbtP and LbtU does not impair L. pneumophila growth in the amoebal host Acanthamoeba castellanii, demonstrating a host-specific requirement for the activities of these two transporters in iron acquisition. The growth defect of the ΔlbtP mutant in macrophages is not due to alterations in growth kinetics. Instead, the absence of LbtP limits L. pneumophila replication and causes bacteria to prematurely exit the host cell. These results demonstrate the existence of a preprogrammed exit strategy in response to iron limitation that allows L. pneumophila to abandon the host cell when nutrients are exhausted. PMID:27185787

  1. Oral iron acutely elevates bacterial growth in human serum.

    Science.gov (United States)

    Cross, James H; Bradbury, Richard S; Fulford, Anthony J; Jallow, Amadou T; Wegmüller, Rita; Prentice, Andrew M; Cerami, Carla

    2015-01-01

    Iron deficiency is the most common nutrient deficiency worldwide and routine supplementation is standard policy for pregnant mothers and children in most low-income countries. However, iron lies at the center of host-pathogen competition for nutritional resources and recent trials of iron administration in African and Asian children have resulted in significant excesses of serious adverse events including hospitalizations and deaths. Increased rates of malaria, respiratory infections, severe diarrhea and febrile illnesses of unknown origin have all been reported, but the mechanisms are unclear. We here investigated the ex vivo growth characteristics of exemplar sentinel bacteria in adult sera collected before and 4 h after oral supplementation with 2 mg/kg iron as ferrous sulfate. Escherichia coli, Yersinia enterocolitica and Salmonella enterica serovar Typhimurium (all gram-negative bacteria) and Staphylococcus epidermidis (gram-positive) showed markedly elevated growth in serum collected after iron supplementation. Growth rates were very strongly correlated with transferrin saturation (p oral supplements with highly soluble (non-physiological) iron, as typically used in low-income settings, could promote bacteremia by accelerating early phase bacterial growth prior to the induction of immune defenses. PMID:26593732

  2. Transporters Contributing to Iron Trafficking in Plants

    Institute of Scientific and Technical Information of China (English)

    Sarah S. Conte; Elsbeth L. Walker

    2011-01-01

    T This review will discuss recent progress in understanding the many roles of transporters in the whole-plant physiological processes that maintain iron (Fe) homeostasis. These processes include uptake from the soil via roots, control of transport from roots to above-ground parts of the plant, unloading of Fe from the xylem in above-ground parts, loading of Fe into mitochondria and plastids, transport of Fe to reproductive parts of the plant, and Fe mobilization during seed germination. In addition, we will discuss the mechanisms that plants use to cope with an apparently unintended consequence of Fe acquisition: the uptake of toxic heavy metals via Fe transporters. Rapid progress has been made in understanding the transport processes involved in each of these areas in the last 5 years and this review will focus on this recent progress. We will also highlight the key questions regarding transport steps that remain to be elucidated.

  3. Magnetic transport properties in iron/iron-oxide films

    International Nuclear Information System (INIS)

    Iron/iron-oxide granular films were fabricated using reactive dc magnetron sputtering. Their structural, magnetic and transport properties were systematically studied. XPS and TEM confirmed the coexistence of Fe, FeO and Fe2O3. A metal-insulator transition was observed with the increasing of the oxygen component in the film. The temperature dependencies of longitudinal resistivity ρxx and anomalous Hall resistivity ρxy were discussed. We found the enhancement of ρxy and investigated the scaling law between anomalous Hall coefficient Rs and ρxx. In all the samples, Rs was found to be proportional to ρxx when ρxx is small, which indicated the skew scattering is dominant

  4. Effect of cell physicochemical characteristics and motility on bacterial transport in groundwater

    Science.gov (United States)

    Becker, M.W.; Collins, S.A.; Metge, D.W.; Harvey, R.W.; Shapiro, A.M.

    2004-01-01

    The influence of physicochemical characteristics and motility on bacterial transport in groundwater were examined in flow-through columns. Four strains of bacteria isolated from a crystalline rock groundwater system were investigated, with carboxylate-modified and amidine-modified latex microspheres and bromide as reference tracers. The bacterial isolates included a gram-positive rod (ML1), a gram-negative motile rod (ML2), a nonmotile mutant of ML2 (ML2m), and a gram-positive coccoid (ML3). Experiments were repeated at two flow velocities, in a glass column packed with glass beads, and in another packed with iron-oxyhydroxide coated glass beads. Bacteria breakthrough curves were interpreted using a transport equation that incorporates a sorption model from microscopic observation of bacterial deposition in flow-cell experiments. The model predicts that bacterial desorption rate will decrease exponentially with the amount of time the cell is attached to the solid surface. Desorption kinetics appeared to influence transport at the lower flow rate, but were not discernable at the higher flow rate. Iron-oxyhydroxide coatings had a lower-than-expected effect on bacterial breakthrough and no effect on the microsphere recovery in the column experiments. Cell wall type and shape also had minor effects on breakthrough. Motility tended to increase the adsorption rate, and decrease the desorption rate. The transport model predicts that at field scale, desorption rate kinetics may be important to the prediction of bacteria transport rates. ?? 2003 Elsevier B.V. All rights reserved.

  5. Silkworm ferritin 1 heavy chain homolog is involved in defense against bacterial infection through regulation of haemolymph iron homeostasis.

    Science.gov (United States)

    Otho, Sohail Ahmed; Chen, Kangkang; Zhang, Yongdong; Wang, Peng; Lu, Zhiqiang

    2016-02-01

    Iron functions as a nutrient and a potential toxin in all organisms. It plays a key role in the interaction between microbes and their hosts as well. Microbial infection disrupts iron homeostasis in the host; meanwhile the host endeavors to keep the homeostasis through iron transport and storage. Transferrins and ferritins are the major iron-binding proteins that affect iron distribution in insects. In this study, we investigated a possible involvement of Bombyx mori ferritin 1 (BmFer1) heavy chain homolog in the defense against bacterial infection in the silkworm larvae. The BmFer1 mRNA abundance was up-regulated in hemocytes, but not in fat body, after Pseudomonas aeruginosa or Staphylococcus aureus infection. The infection resulted in elevated iron levels in the hemolymph. Injection of recombinant BmFer1 protein into hemocoel reduced the plasma iron level after infection, limited the bacterial growth in the hemolymph, and resulted in a lower mortality caused by infection. Our study indicated that B. mori ferritin-1 may restrict iron access of the invading bacteria to block their growth as a defense strategy. PMID:26522340

  6. Molecular mechanism of regulation of iron transport across placenta

    OpenAIRE

    Hanif, R.

    2012-01-01

    During the third trimester of pregnancy, iron transport from mother to the foetus against a concentration gradient determines the iron endowment in foetal and neonatal life. Hfe functions as an upstream regulator of liver hepcidin which has been demonstrated to be a negative regulator of intestinal absorption of dietary iron and macrophage efflux of recycled iron. Hepcidin has also been proposed to be a negative regulator of iron efflux from the placenta, however it is not k...

  7. The placenta: the forgotten essential organ of iron transport.

    Science.gov (United States)

    Cao, Chang; Fleming, Mark D

    2016-07-01

    Optimal iron nutrition in utero is essential for development of the fetus and helps establish birth iron stores adequate to sustain growth in early infancy. In species with hemochorial placentas, such as humans and rodents, iron in the maternal circulation is transferred to the fetus by directly contacting placental syncytiotrophoblasts. Early kinetic studies provided valuable data on the initial uptake of maternal transferrin, an iron-binding protein, by the placenta. However, the remaining steps of iron trafficking across syncytiotrophoblasts and through the fetal endothelium into the fetal blood remain poorly characterized. Over the last 20 years, identification of transmembrane iron transporters and the iron regulatory hormone hepcidin has greatly expanded the knowledge of cellular iron transport and its regulation by systemic iron status. In addition, emerging human and animal data demonstrating comprised fetal iron stores in severe maternal iron deficiency challenge the classic dogma of exclusive fetal control over the transfer process and indicate that maternal and local signals may play a role in regulating this process. This review compiles current data on the kinetic, molecular, and regulatory aspects of placental iron transport and considers new questions and knowledge gaps raised by these advances. PMID:27261274

  8. Transport of contaminated iron-scrap with ionic radiation

    International Nuclear Information System (INIS)

    In the contribution author informs about problems with transport of contaminated iron-scrap with ionization radiation that are solved in our company ZSSK Cargo - Slovakia. In last years (2006 - 2013) there has been recurrence of transports, in which an increased amount of radioactivity was found. These were the shipments of iron-scrap with accidental ionizing radiation.

  9. Vacuolar-Iron-Transporter1-Like Proteins Mediate Iron Homeostasis in Arabidopsis

    OpenAIRE

    Gollhofer, Julia; Timofeev, Roman; LAN, PING; Schmidt, Wolfgang; Buckhout, Thomas J.

    2014-01-01

    Iron deficiency is a nutritional problem in plants and reduces crop productivity, quality and yield. With the goal of improving the iron (Fe) storage properties of plants, we have investigated the function of three Arabidopsis proteins with homology to Vacuolar Iron Transporter1 (AtVIT1). Heterologous expression of Vacuolar Iron Transporter-Like1 (AtVTL1; At1g21140), AtVTL2 (At1g76800) or AtVTL5 (At3g25190) in the yeast vacuolar Fe transport mutant, Δccc1, restored growth in the presence of 4...

  10. Iron-clay reactivity in radioactive waste disposal - Impacts of bacterial activities and heterogeneities

    International Nuclear Information System (INIS)

    This study focuses on the interactions between two materials that may be introduced in a geological disposal of radioactive waste: metallic materials such as the high-level waste overpack, and clay materials such as the clay host rock. Indeed, the interactions between these two materials in such conditions could induce a change of their initial confinement properties. This work aimed at determining the influence of heterogeneities (technological gaps and fractures) and bacterial activities on these interactions, in terms of evolution of chemical and hydraulic properties of clayey materials. To this end, two percolation cells have been conducted during 13 months: the first one with two bacteria (SRB, IRB), the second one without bacteria. These experiments, carried out at 60 C, involved circulating synthetic water representative of the Tournemire pore water through iron powder and through Toarcian artificially cracked argillite from Tournemire. An iron rod was also placed into the argillite. Thus, solid characterizations (SEM, SEM/EDS, Raman, XRD, X-ray tomography) allowed the study of both interfaces: the iron powder/argillite interface and the iron rod/argillite interface. The water probably circulated into the crack during the entire test, which was confirmed by reactive transport modeling with the HYTEC reactive transport code. However, no secondary phase was identified in the crack. In addition, bacteria survival in the biotic cell was confirmed during the experiment by monitoring their population and by analyzing their genetic diversity at the end of the experiment. A strong decrease in sulfate concentration was measured in the output, which confirms the SRB activity. Solid characterization conducted at the end of the experiments have highlighted, with and without bacteria, the occurrence of magnetite and chukanovite in the iron powder, the latter being mainly located close to the argillite interface. In the argillite, a Fe-enriched zone (10 μm) was

  11. Iron-Responsive Bacterial Small RNAs: Variations on a Theme

    OpenAIRE

    Oglesby-Sherrouse, Amanda G.; Murphy, Erin R.

    2013-01-01

    For most living organisms, iron is both essential and potentially toxic, making the precise maintenance of iron homeostasis necessary for survival. To manage this paradox, bacteria regulate the acquisition, utilization, and storage of iron in response to its availability. The iron-dependent ferric uptake repressor (Fur) often mediates this iron-responsive regulation, by both direct and indirect mechanisms. In 2002, Masse and Gottesman identified a novel target of Fur-mediated regulation in Es...

  12. Intestinal Bacterial Flora that Compete on the Haem Precursor Iron Fumarate in Iron Deficiency Anemia Cases

    Directory of Open Access Journals (Sweden)

    Selim, S. A. H.

    2012-06-01

    Full Text Available Aims: The study focused on finding if there is any possible relation between the intestinal bacterial population quantitative and qualitative and the deficiency of the most important iron compounds as haem precursors. Methodology and Results: Blood complete picture and stool analyses were done to 750 volunteer cases whom were asked for these analyses by their physicians. Analyses proved that 560 cases representing 75.2 % were anemic as the RBC(s based on counts of the total studied cases of less than 263 x 104 and the haemoglobin amount ranged between 7.2 and 11.3 g/dl, while the remainder 24.8 % of the volunteer sample was not anemic. A high male/female ratio ofanemic cases, 1:27 was also documented. Considering that all the studied stool samples should be completely free from any parasites or any other anemia-related diseases was a priority. Bacteriological analysis of stool samples of the anemic cases resulted in the detection of high counts of total viable bacteria, exceeded 42 x 109 cfu/g, while it was never more than 26 x 106 cfu/g and decreased to 4 x 106 cfu/g in many cases in this study. Identifying of the 361 bacterial isolates, were found to belong to 12 genera and 19 species, 6 of them; Pseudomonas putrefaciens, Micrococcus luteus, Erysipelothrix rhusiopathiae, Bacillus megaterium, Bacillus pumilus and Bacillus coagulans , were found and in high counts in the stool samples of only anemic cases. The ability of these isolates to compete for iron compounds such as ferrous fumarate alone or with glucose and phytate as activators or inhibitors to these abilities was investigated. Results proved 11 species out of the 19 identified species are capable to use and compete on ferrous fumarate as a haemprecursor. Sensitivity test for the representatives of the 19 species and 6 of the most commonly used antibiotics in the Egyptian pharmacy, using standard disc method, revealed variable susceptibilities of almost all of them to more than one of

  13. Quantitative NME microscopy of iron transport in methanogenic aggregates

    OpenAIRE

    Vergeldt, F.J.; Bartacek, J.; Gerkema, E.; Osuma, B.; Philippi, J.G.M.; Lens, P.; As, van, H.

    2009-01-01

    Transport of micronutrients (iron, cobalt, nickel, etc.) within biofilms matrixes such as methanogenic granules is of high importance, because these are either essential or toxic for the microorganisms living inside the biofilm. The present study demonstrates quantitative measurements of metal transport inside these biofilms using T1 weighted 3D RARE. It is shown that iron(II)-EDTA diffusion within the granule is independent of direction or the inner structure of the granules. Assuming positi...

  14. Oral iron acutely elevates bacterial growth in human serum

    OpenAIRE

    James H Cross; Bradbury, Richard S.; Fulford, Anthony J; Jallow, Amadou T.; Rita Wegmüller; Prentice, Andrew M.; Carla Cerami

    2015-01-01

    Iron deficiency is the most common nutrient deficiency worldwide and routine supplementation is standard policy for pregnant mothers and children in most low-income countries. However, iron lies at the center of host-pathogen competition for nutritional resources and recent trials of iron administration in African and Asian children have resulted in significant excesses of serious adverse events including hospitalizations and deaths. Increased rates of malaria, respiratory infections, severe ...

  15. Neutrophil Gelatinase-Associated Lipocalin Expresses Antimicrobial Activity by Interfering with l-Norepinephrine-Mediated Bacterial Iron Acquisition▿

    OpenAIRE

    Miethke, Marcus; Skerra, Arne

    2010-01-01

    l-norepinephrine (NE) is a neuroendocrine catecholamine that supports bacterial growth by mobilizing iron from a primary source such as holotransferrin to increase its bioavailability for cellular uptake. Iron complexes of NE resemble those of bacterial siderophores that are scavenged by human neutrophil gelatinase-associated lipocalin (NGAL) as part of the innate immune defense. Here, we show that NGAL binds iron-complexed NE, indicating physiological relevance for both bacterial and human i...

  16. Iron bacterial phylogeny and their execution towards iron availability in Equatorial Indian Ocean and Coastal Arabian Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Rajasabapathy, R.; Mohandass, C.; VijayRaj, A.S.; Madival, V.V.; Meena, R.M.

    stream_size 33831 stream_content_type text/plain stream_name Polish_J_Microbiol_62_391a.pdf.txt stream_source_info Polish_J_Microbiol_62_391a.pdf.txt Content-Encoding UTF-8 Content-Type text/plain; charset=UTF-8 1... Author version: Polish J. Microbiol., vol.62(4); 2013; 391-400 Iron bacterial phylogeny and their execution towards iron availability in Equatorial Indian Ocean and Coastal Arabian Sea RAJU RAJASABAPATHY, CHELLANDI MOHANDASS*, AJAKKALAMOOLE...

  17. Transmembrane transport of peptidoglycan precursors across model and bacterial membranes

    NARCIS (Netherlands)

    van Dam, V.; Sijbrandi, R.; Kol, M.A.; Swiezewska, E.; de Kruijff, B.; Breukink, E.J.

    2007-01-01

    Translocation of the peptidoglycan precursor Lipid II across the cytoplasmic membrane is a key step in bacterial cell wall synthesis, but hardly understood. Using NBD-labelled Lipid II, we showed by fluorescence and TLC assays that Lipid II transport does not occur spontaneously and is not induced b

  18. Geochemical investigation of iron transport into bentonite as steel corrodes

    International Nuclear Information System (INIS)

    some experiments. Using the experimental data as a guide, a modelling investigation has been carried out. The objectives of the modelling investigation were: To develop a geochemical model of the transport of iron into bentonite based on the clear experimental evidence of the penetration of iron into bentonite. To improve our understanding of the desaturation of the bentonite as water is consumed during the corrosion process and the resultant gas(es) escapes. The production of iron from the corroding source was modelled using a rate of gas evolution that had been fitted. It was shown that ion exchange and surface complexation processes do not provide sufficient sorption to predict the high amount of iron observed in the solid phase. Therefore alternative processes, such as iron-containing mineral formation or mineral transformations, were also suggested to account for the amount of iron observed within the bentonite phase. Magnetite was identified as the most thermodynamically stable solubility limiting phase under the experimental conditions. A one-dimensional transport model was constructed to include all relevant processes. The simulations considered the diffusive transport of Fe2+ ions away from a corroding source, using the rate of gas evolution resulting from the corrosion process. Ion exchange and surface complexation processes were allowed within the bentonite which would provide sorption of iron onto and within the bentonite solid. The pH was buffered by allowing protonation and deprotonation of the surface sites of the bentonite solid. In addition, saturation of iron-containing minerals was permitted. The base case model suggests that about 4.4 wt % of iron could form in the bentonite if the formation of magnetite was allowed. However, the maximum theoretical amount of iron available from the source term is limited to 4.5 wt % of iron by the cumulative gas evolution rate, which is lower than the observed amount of iron in the bulk bentonite (6.6 wt %). A

  19. ROSET Model of TonB Action in Gram-Negative Bacterial Iron Acquisition.

    Science.gov (United States)

    Klebba, Phillip E

    2016-01-01

    The rotational surveillance and energy transfer (ROSET) model of TonB action suggests a mechanism by which the electrochemical proton gradient across the Gram-negative bacterial inner membrane (IM) promotes the transport of iron through ligand-gated porins (LGP) in the outer membrane (OM). TonB associates with the IM by an N-terminal hydrophobic helix that forms a complex with ExbBD. It also contains a central extended length of rigid polypeptide that spans the periplasm and a dimeric C-terminal-ββαβ-domain (CTD) with LysM motifs that binds the peptidoglycan (PG) layer beneath the OM bilayer. The TonB CTD forms a dimer with affinity for both PG- and TonB-independent OM proteins (e.g., OmpA), localizing it near the periplasmic interface of the OM bilayer. Porins and other OM proteins associate with PG, and this general affinity allows the TonB CTD dimer to survey the periplasmic surface of the OM bilayer. Energized rotational motion of the TonB N terminus in the fluid IM bilayer promotes the lateral movement of the TonB-ExbBD complex in the IM and of the TonB CTD dimer across the inner surface of the OM. When it encounters an accessible TonB box of a (ligand-bound) LGP, the monomeric form of the CTD binds and recruits it into a 4-stranded β-sheet. Because the CTD is rotating, this binding reaction transfers kinetic energy, created by the electrochemical proton gradient across the IM, through the periplasm to the OM protein. The equilibration of the TonB C terminus between the dimeric and monomeric forms that engage in different binding reactions allows the identification of iron-loaded LGP and then the internalization of iron through their trans-outer membrane β-barrels. Hence, the ROSET model postulates a mechanism for the transfer of energy from the IM to the OM, triggering iron uptake. PMID:26787763

  20. Subclinical iron deficiency is a strong predictor of bacterial vaginosis in early pregnancy

    Directory of Open Access Journals (Sweden)

    Claeys Geert

    2005-07-01

    Full Text Available Abstract Background Bacterial vaginosis (BV is the single most common vaginal infection in women of childbearing age and associated with a sizeable infectious disease burden among both non-pregnant and pregnant women, including a significantly elevated risk of adverse pregnancy outcome. Overall, little progress has been made in identifying causal factors involved in BV acquisition and persistence. We sought to evaluate maternal iron status in early pregnancy as a putative risk factor for BV, considering that micronutrients, and iron deficiency in particular, affect the host response against bacterial colonization, even in the setting of mild micronutrient deficiencies. Methods In a nested case-control study, we compared maternal iron status at entry to prenatal care (mean gestational age 9.2 ± 2.6 weeks between eighty women with healthy vaginal microflora and eighteen women with vaginosis-like microflora. Vaginal microflora status was assessed by assigning a modified Nugent score to a Gram-stained vaginal smear. Maternal iron status was assayed by an array of conventional erythrocyte and serum indicators for iron status assessment, but also by more sensitive and more specific indicators of iron deficiency, including soluble transferrin receptors (sTfR as an accurate measure of cellular and tissue iron deficiency and the iron deficiency log10[sTfR/ferritin] index as the presently most accurate measure of body storage iron available. Results We found no statistically significant correlation between vaginal microflora status and routinely assessed iron parameters. In contrast, a highly significant difference between the healthy and vaginosis-like microflora groups of women was shown in mean values of sTfR concentrations (1.15 ± 0.30 mg/L versus 1.37 ± 0.38 mg/L, p = 0.008 and in mean iron deficiency log10[sTfR/ferritin] index values (1.57 ± 0.30 versus 1.08 ± 0.56, p = 0.003, indicating a strong association between iron deficiency and

  1. Ferritin polarization and iron transport across monolayer epithelial barriers in mammals

    Directory of Open Access Journals (Sweden)

    EstherG.Meyron-Holtz

    2014-08-01

    Iron is an essential element but toxic at excess. Therefore, all iron-requiring organisms tightly regulate iron concentrations on systemic and cellular levels. In contrast to most cell types that control just their own iron homeostasis, EBCs also regulate homeostasis of the compartment they enclose or the body as a whole. Iron is transported across EBCs by specialized transporters such as the transferrin receptor and ferroportin. Recently, the iron storage protein ferritin was also attributed a role in the regulation of systemic iron homeostasis and we gathered evidence from the literature and original data that ferritin is polarized in EBC, suggesting also a role for ferritin in iron trafficking across EBCs.

  2. Divalent metal transporter 1 (Dmt1) Mediates Copper Transport in the Duodenum of Iron-Deficient Rats and When Overexpressed in Iron-Deprived HEK-293 Cells12

    OpenAIRE

    Jiang, Lingli; Garrick, Michael D.; Garrick, Laura M.; Zhao, Lin; Collins, James F.

    2013-01-01

    Intracellular copper-binding proteins (metallothionein I/II) and a copper exporter (Menkes copper-transporting ATPase) are upregulated in duodenal enterocytes from iron-deficient rats, consistent with copper accumulation in the intestinal mucosa. How copper enters enterocytes during iron deficiency is, however, not clear. Divalent metal transporter 1 (Dmt1), the predominant iron importer in the mammalian duodenum, also transports other metal ions, possibly including copper. Given this possibi...

  3. Mechanism of increased iron absorption in murine model of hereditary hemochromatosis: Increased duodenal expression of the iron transporter DMT1

    OpenAIRE

    Fleming, Robert E.; Migas, Mary C.; Zhou, Xiaoyan; Jiang, Jinxing; Britton, Robert S.; Brunt, Elizabeth M.; Tomatsu, Shunji; Waheed, Abdul; Bacon, Bruce R; Sly, William S.

    1999-01-01

    Hereditary hemochromatosis (HH) is a common autosomal recessive disorder characterized by tissue iron deposition secondary to excessive dietary iron absorption. We recently reported that HFE, the protein defective in HH, was physically associated with the transferrin receptor (TfR) in duodenal crypt cells and proposed that mutations in HFE attenuate the uptake of transferrin-bound iron from plasma by duodenal crypt cells, leading to up-regulation of transporters for dietary iron. Here, we tes...

  4. Vacuolar-Iron-Transporter1-Like proteins mediate iron homeostasis in Arabidopsis.

    Science.gov (United States)

    Gollhofer, Julia; Timofeev, Roman; Lan, Ping; Schmidt, Wolfgang; Buckhout, Thomas J

    2014-01-01

    Iron deficiency is a nutritional problem in plants and reduces crop productivity, quality and yield. With the goal of improving the iron (Fe) storage properties of plants, we have investigated the function of three Arabidopsis proteins with homology to Vacuolar Iron Transporter1 (AtVIT1). Heterologous expression of Vacuolar Iron Transporter-Like1 (AtVTL1; At1g21140), AtVTL2 (At1g76800) or AtVTL5 (At3g25190) in the yeast vacuolar Fe transport mutant, Δccc1, restored growth in the presence of 4 mM Fe. Isolated vacuoles from yeast expressing either of the VTL genes in the Δccc1 background had a three- to four-fold increase in Fe concentration compared to vacuoles isolated from the untransformed mutant. Transiently expressed GFP-tagged AtVTL1 was localized exclusively and AtVTL2 was localized primarily to the vacuolar membrane of onion epidermis cells. Seedling root growth of the Arabidopsis nramp3/nramp4 and vit1-1 mutants was decreased compared to the wild type when seedlings were grown under Fe deficiency. When expressed under the 35S promoter in the nramp3/nramp4 or vit1-1 backgrounds, AtVTL1, AtVTL2 or AtVTL5 restored root growth in both mutants. The seed Fe concentration in the nramp3/nramp4 mutant overexpressing AtVTL1, AtVTL2 or AtVTL5 was between 50 and 60% higher than in non-transformed double mutants or wild-type plants. We conclude that the VTL proteins catalyze Fe transport into vacuoles and thus contribute to the regulation of Fe homeostasis in planta. PMID:25360591

  5. Chloroplast Iron Transport Proteins - Function and Impact on Plant Physiology.

    Science.gov (United States)

    López-Millán, Ana F; Duy, Daniela; Philippar, Katrin

    2016-01-01

    Chloroplasts originated about three billion years ago by endosymbiosis of an ancestor of today's cyanobacteria with a mitochondria-containing host cell. During evolution chloroplasts of higher plants established as the site for photosynthesis and thus became the basis for all life dependent on oxygen and carbohydrate supply. To fulfill this task, plastid organelles are loaded with the transition metals iron, copper, and manganese, which due to their redox properties are essential for photosynthetic electron transport. In consequence, chloroplasts for example represent the iron-richest system in plant cells. However, improvement of oxygenic photosynthesis in turn required adaptation of metal transport and homeostasis since metal-catalyzed generation of reactive oxygen species (ROS) causes oxidative damage. This is most acute in chloroplasts, where radicals and transition metals are side by side and ROS-production is a usual feature of photosynthetic electron transport. Thus, on the one hand when bound by proteins, chloroplast-intrinsic metals are a prerequisite for photoautotrophic life, but on the other hand become toxic when present in their highly reactive, radical generating, free ionic forms. In consequence, transport, storage and cofactor-assembly of metal ions in plastids have to be tightly controlled and are crucial throughout plant growth and development. In the recent years, proteins for iron transport have been isolated from chloroplast envelope membranes. Here, we discuss their putative functions and impact on cellular metal homeostasis as well as photosynthetic performance and plant metabolism. We further consider the potential of proteomic analyses to identify new players in the field. PMID:27014281

  6. Fabrication of a Functionalized Magnetic Bacterial Nanocellulose with Iron Oxide Nanoparticles.

    Science.gov (United States)

    Arias, Sandra L; Shetty, Akshath R; Senpan, Angana; Echeverry-Rendón, Mónica; Reece, Lisa M; Allain, Jean Paul

    2016-01-01

    In this study, bacterial nanocellulose (BNC) produced by the bacteria Gluconacetobacter xylinus is synthesized and impregnated in situ with iron oxide nanoparticles (IONP) (Fe3O4) to yield a magnetic bacterial nanocellulose (MBNC). The synthesis of MBNC is a precise and specifically designed multi-step process. Briefly, bacterial nanocellulose (BNC) pellicles are formed from preserved G. xylinus strain according to our experimental requirements of size and morphology. A solution of iron(III) chloride hexahydrate (FeCl3·6H2O) and iron(II) chloride tetrahydrate (FeCl2·4H2O) with a 2:1 molar ratio is prepared and diluted in deoxygenated high purity water. A BNC pellicle is then introduced in the vessel with the reactants. This mixture is stirred and heated at 80 °C in a silicon oil bath and ammonium hydroxide (14%) is then added by dropping to precipitate the ferrous ions into the BNC mesh. This last step allows forming in situ magnetite nanoparticles (Fe3O4) inside the bacterial nanocellulose mesh to confer magnetic properties to BNC pellicle. A toxicological assay was used to evaluate the biocompatibility of the BNC-IONP pellicle. Polyethylene glycol (PEG) was used to cover the IONPs in order to improve their biocompatibility. Scanning electron microscopy (SEM) images showed that the IONP were located preferentially in the fibril interlacing spaces of the BNC matrix, but some of them were also found along the BNC ribbons. Magnetic force microscope measurements performed on the MBNC detected the presence magnetic domains with high and weak intensity magnetic field, confirming the magnetic nature of the MBNC pellicle. Young's modulus values obtained in this work are also in a reasonable agreement with those reported for several blood vessels in previous studies. PMID:27285589

  7. Neutrophil Gelatinase-Associated Lipocalin Expresses Antimicrobial Activity by Interfering with l-Norepinephrine-Mediated Bacterial Iron Acquisition▿

    Science.gov (United States)

    Miethke, Marcus; Skerra, Arne

    2010-01-01

    l-norepinephrine (NE) is a neuroendocrine catecholamine that supports bacterial growth by mobilizing iron from a primary source such as holotransferrin to increase its bioavailability for cellular uptake. Iron complexes of NE resemble those of bacterial siderophores that are scavenged by human neutrophil gelatinase-associated lipocalin (NGAL) as part of the innate immune defense. Here, we show that NGAL binds iron-complexed NE, indicating physiological relevance for both bacterial and human iron metabolism. The fluorescence titration of purified recombinant NGAL with the FeIII·(NE)3 iron complex revealed high affinity for this ligand, with a KD of 50.6 nM. In contrast, the binding protein FeuA of Bacillus subtilis, which is involved in the bacterial uptake of triscatecholate iron complexes, has a KD for FeIII·(NE)3 of 1.6 μM, indicating that NGAL is an efficient competitor. Furthermore, NGAL was shown to inhibit the NE-mediated growth of both E. coli and B. subtilis strains that either are capable or incapable of producing their native siderophores enterobactin and bacillibactin, respectively. These experiments suggest that iron-complexed NE directly serves as an iron source for bacterial uptake systems, and that NGAL can function as an antagonist of this iron acquisition process. Interestingly, a functional FeuABC uptake system was shown to be necessary for NE-mediated growth stimulation as well as its NGAL-dependent inhibition. This study demonstrates for the first time that human NGAL not only neutralizes pathogen-derived virulence factors but also can effectively scavenge an iron-chelate complex abundant in the host. PMID:20086155

  8. Synthesis and magnetic properties of magnetite-silicate nanocomposites derived from iron oxide of bacterial origin

    International Nuclear Information System (INIS)

    Magnetic nanocomposites containing magnetite (Fe3O4) nanoparticles were prepared from iron oxide microtubules produced by Leptothrix ochracea, a species of water-habitant iron-oxidizing bacteria. The microtubules were mainly composed of Si-containing ferric hydroxide that shows a broad X-ray diffraction pattern similar to that of 2-line ferrihydrite. After moderate heat treatment in a reductive atmosphere above 325 °C, the ferric ions were partially reduced to a ferrous state, and nanocrystalline Fe3O4 with a spinel-type structure was formed in a noncrystalline silicate matrix. The average crystallite size of the Fe3O4 nanoparticles was estimated to be in the order of a few nanometers. The sample heat-treated at 500 °C exhibited considerable magnetization together with superparamagnetic behavior at room temperature, and super-spin-glass interaction occurred at low temperature. On further heat treatment above 530 °C, Fe3O4 was reduced to wüstite (Fe1−xO) and finally crystallized into iron metal (α-Fe) and ferrous silicate (Fe2SiO4). -- Highlights: ► Iron oxides of bacterial origin are unique sources of magnetic nanocomposites. ► Fe3O4 nanoparticles with silicates were formed by reduction of the bacterial iron oxide. ► The sample heat-treated at 500 °C was a magnetic nanocomposite of Fe3O4 and amorphous silicate. ► It exhibits unique magnetic properties including superparamagnetism and super-spin-glass states.

  9. Transmembrane transport of peptidoglycan precursors across model and bacterial membranes.

    Science.gov (United States)

    van Dam, Vincent; Sijbrandi, Robert; Kol, Matthijs; Swiezewska, Ewa; de Kruijff, Ben; Breukink, Eefjan

    2007-05-01

    Translocation of the peptidoglycan precursor Lipid II across the cytoplasmic membrane is a key step in bacterial cell wall synthesis, but hardly understood. Using NBD-labelled Lipid II, we showed by fluorescence and TLC assays that Lipid II transport does not occur spontaneously and is not induced by the presence of single spanning helical transmembrane peptides that facilitate transbilayer movement of membrane phospholipids. MurG catalysed synthesis of Lipid II from Lipid I in lipid vesicles also did not result in membrane translocation of Lipid II. These findings demonstrate that a specialized protein machinery is needed for transmembrane movement of Lipid II. In line with this, we could demonstrate Lipid II translocation in isolated Escherichia coli inner membrane vesicles and this transport could be uncoupled from the synthesis of Lipid II at low temperatures. The transport process appeared to be independent from an energy source (ATP or proton motive force). Additionally, our studies indicate that translocation of Lipid II is coupled to transglycosylation activity on the periplasmic side of the inner membrane. PMID:17501931

  10. Bacterial disproportionation of elemental sulfur coupled to chemical reduction of iron or manganese

    DEFF Research Database (Denmark)

    Thamdrup, Bo; Finster, Kai; Hansen, Jens Würgler;

    1993-01-01

    A new chemolithotrophic bacterial metabolism was discovered in anaerobic marine enrichment cultures. Cultures in defined medium with elemental sulfur (S) and amorphous ferric hydroxide (FeOOH) as sole substrates showed intense formation of sulfate. Furthermore, precipitation of ferrous sulfide and...... the formed sulfide and the added FeOOH led to the observed precipitation of iron sulfides. Sulfate and iron sulfides were also produced when FeOOH was replaced by FeCO(3). Further enrichment with manganese oxide, MnO(2), instead of FeOOH yielded stable cultures which formed sulfate during concomitant...... reduction of MnO(2) to Mn. Growth of small rod-shaped bacteria was observed. When incubated without MnO(2), the culture did not grow but produced small amounts of SO(4) and H(2)S at a ratio of 1:3, indicating again a disproportionation of S. The observed microbial disproportionation of S only proceeds...

  11. Fast neutron transport through laminated iron-water shield

    International Nuclear Information System (INIS)

    Reaction rates were measured in a laminated iron-water shield by threshold detectors, from which the neutron spectra were obtained with the aid of the SAND-II code. The error analysis for the unfolding of the spectra proved that the spectra obtained satisfactorily in the energy range of 1 -- 10.5 MeV. One-dimensional calculations were made by the discrete ordinates transport codes ANISN-JR and PALLAS in a spherical geometry. Agreements within a factor of 1.6 for the spectra and 1.31 for the reaction rates were obtained between the measurements and calculations, though rather large discrepancies were found in the spectra at the energy range of 3 -- 7 MeV. All experimental data in absolute value and detailed specifications for source, detector and the experimental geometry are given for a fast neutron transport benchmark calculation. (author)

  12. Calcium channel blockers ameliorate iron overload-associated hepatic fibrosis by altering iron transport and stellate cell apoptosis.

    Science.gov (United States)

    Zhang, Ying; Zhao, Xin; Chang, Yanzhong; Zhang, Yuanyuan; Chu, Xi; Zhang, Xuan; Liu, Zhenyi; Guo, Hui; Wang, Na; Gao, Yonggang; Zhang, Jianping; Chu, Li

    2016-06-15

    Liver fibrosis is the principal cause of morbidity and mortality in patients with iron overload. Calcium channel blockers (CCBs) can antagonize divalent cation entry into renal and myocardial cells and inhibit fibrogenic gene expression. We investigated the potential of CCBs to resolve iron overload-associated hepatic fibrosis. Kunming mice were assigned to nine groups (n=8 per group): control, iron overload, deferoxamine, high and low dose verapamil, high and low dose nimodipine, and high and low dose diltiazem. Iron deposition and hepatic fibrosis were measured in mouse livers. Expression levels of molecules associated with transmembrane iron transport were determined by molecular biology approaches. In vitro HSC-T6 cells were randomized into nine groups (the same groups as the mice). Changes in proliferation, apoptosis, and metalloproteinase expression in cells were detected to assess the anti-fibrotic effects of CCBs during iron overload conditions. We found that CCBs reduced hepatic iron content, intracellular iron deposition, the number of hepatic fibrotic areas, collagen expression levels, and hydroxyproline content. CCBs rescued abnormal expression of α1C protein in L-type voltage-dependent calcium channel (LVDCC) and down-regulated divalent metal transporter-1 (DMT-1) expression in mouse livers. In iron-overloaded HSC-T6 cells, CCBs reduced iron deposition, inhibited proliferation, induced apoptosis, and elevated expression of matrix metalloproteinase-13 (MMP-13) and tissue inhibitor of metalloproteinase-1 (TIMP-1). CCBs are potential therapeutic agents that can be used to address hepatic fibrosis during iron overload. They resolve hepatic fibrosis probably correlated with regulating transmembrane iron transport and inhibiting HSC growth. PMID:27095094

  13. Acquisition, Transport, and Storage of Iron by Pathogenic Fungi

    OpenAIRE

    Howard, Dexter H.

    1999-01-01

    Iron is required by most living systems. A great variety of means of acquisition, avenues of uptake, and methods of storage are used by pathogenic fungi to ensure a supply of the essential metal. Solubilization of insoluble iron polymers is the first step in iron assimilation. The two methods most commonly used by microorganisms for solubilization of iron are reduction and chelation. Reduction of ferric iron to ferrous iron by enzymatic or nonenzymatic means is a common mechanism among pathog...

  14. Mathematical Models of Cobalt and Iron Ions Catalyzed Microwave Bacterial Deactivation

    Directory of Open Access Journals (Sweden)

    Arthur L. Williams

    2007-09-01

    Full Text Available Time differences for Enterococcus faecalis, Staphylococcus aureus, and Escherichia coli survival during microwave irradiation (power 130 W in the presence of aqueous cobalt and iron ions were investigated. Measured dependencies had "bell" shape forms with maximum bacterial viability between 1 - 2 min becoming insignificant at 3 minutes. The deactivation time for E. faecalis, S. aureus and E.coli in the presence of metal ions were smaller compared to a water control (4 -5 min. Although various sensitivities to the metal ions were observed, S. aureus and E. coli and were the most sensitive for cobalt and iron, respectively. The rapid reduction of viable bacteria during microwave treatment in the presence of metal ions could be explained by increased metal ion penetration into bacteria. Additionally, microwave irradiation may have increased the kinetic energy of the metal ions resulting in lower survival rates. The proposed mathematical model for microwave heating took into account the "growth" and "death" factors of the bacteria, forming second degree polynomial functions. Good relationships were found between the proposed mathematical models and the experimental data for bacterial deactivation (coefficient of correlation 0.91 - 0.99.

  15. Localization of Iron in Arabidopsis Seed Requires the Vacuolar Membrane Transporter VIT1

    International Nuclear Information System (INIS)

    Iron deficiency is a major human nutritional problem wherever plant-based diets are common. Using synchrotron x-ray fluorescence microtomography to directly visualize iron in Arabidopsis seeds, we show that iron is localized primarily to the provascular strands of the embryo. This localization is completely abolished when the vacuolar iron uptake transporter VIT1 is disrupted. Vacuolar iron storage is also critical for seedling development because vit1-1 seedlings grow poorly when iron is limiting. We have uncovered a fundamental aspect of seed biology that will ultimately aid the development of nutrient-rich seed, benefiting both human health and agricultural productivity

  16. Divalent metal transporter, iron, and Parkinson's disease:A pathological relationship

    Institute of Scientific and Technical Information of China (English)

    Hyun-pil Lee; Xiongwei Zhu; Gang Liu; Shu G Chen; George Perry; Mark A Smith; Hyoung-gon Lee

    2010-01-01

    @@ Iron is an essential component of oxidative metabolism and a cofactor for a variety of enzymes. Because of its chemical properties as a transition metal, iron can serve both as an electron donor and acceptor and, as such, excess levels of free iron are toxic. Given this potential for toxicity, a number of pro-teins, including transferrin, transferrin receptor, and ferritin, tightly control iron transport, uptake, and storage in the central nervous system.

  17. Expression of Iron-Related Proteins at the Neurovascular Unit Supports Reduction and Reoxidation of Iron for Transport Through the Blood-Brain Barrier

    DEFF Research Database (Denmark)

    Burkhart, Annette; Skjørringe, Tina; Johnsen, Kasper Bendix;

    2015-01-01

    The mechanisms for iron transport through the blood-brain barrier (BBB) remain a controversy. We analyzed for expression of mRNA and proteins involved in oxidation and transport of iron in isolated brain capillaries from dietary normal, iron-deficient, and iron-reverted rats. The expression was...... endothelial cells provide the machinery for receptor-mediated uptake of ferric iron-containing transferrin. Ferric iron can then undergo reduction to ferrous iron by ferrireductases inside endosomes followed by DMT1-mediated pumping into the cytosol and subsequently cellular export by ferroportin. The...

  18. Mineralization of Iron Oxyhydroxides in the Presence and in the Absence of Bacterial Cells

    Science.gov (United States)

    Châtellier, X.; West, M.; Rose, J.; Fortin, D.; Leppard, G. G.; Ferris, G.

    2001-12-01

    Because of their small size, iron oxides have a large surface area per unit weight ratio and are believed to play an important role as an adsorbing phase in lake sediments for various molecules, including potentially dangerous ones like heavy metals. They have been observed to form in close association with bacterial cells, by oxidation of ferrous ions. It is thus important to determine whether the presence of the bacterial cells can affect the mineralogy and the mesoscopic structure of the Fe-oxides particles, as well as their reactivity towards heavy metals. We synthesized in the lab nanoparticles of Fe-oxides by oxidation of ferrous ions. This was done in the presence and in the absence of various bacterial strains (Escherichia coli, Bacillus subtilis, Pseudomonas Aeruginosa and Bacillus licheniformis) and of inorganic ligands (sulfate, phosphate, silicate). The Fe-oxides particles were then observed by TEM on thin sections and on whole mounts. The chemical composition was estimated by wet chemistry and by EDS. The mineralogy was determined by XRD, SAED and EXAFS. Surface area was investigated by BET. And adsorption of cadmium was also measured at various pH. We observed that the size and the morphology of the particles as well as their mesoscopic spatial organization can be affected by the presence of the cells, whereas the mineralogy is controlled by the chemistry of the solution. The adsorption isotherms of cadmium on the various Fe-oxides will be discussed at the light of these observations.

  19. Using Reactive Transport Modeling to Understand Changes in Electrical Conductivity Associated with Bacterial Growth and Respiration

    Science.gov (United States)

    Regberg, A. B.; Singha, K.; Picardal, F.; Brantley, S. L.

    2011-12-01

    Previous research has linked measured changes in the bulk electrical conductivity (σb) of water-saturated sediments to the respiration and growth of anaerobic bacteria. If the mechanism causing this signal is understood and characterized it could be used to identify and monitor zones of bacterial activity in the subsurface. The 1-D reactive transport model PHREEQC was used to understand σb signals by modeling chemical gradients within two column reactors and corresponding changes in effluent chemistry. The flow-through column reactors were packed with Fe(III)-bearing sediment from Oyster, VA and inoculated with an environmental consortia of microorganisms. Influent in the first reactor was amended with 1mM Na-acetate to encourage the growth of iron-reducing bacteria. Influent in the second reactor was amended with 0.1mM Na-Acetate and 2mM NaNO3 to encourage the growth of nitrate-reducing bacteria. While effluent concentrations of acetate, Fe(II), NO3-, NO2-, and NH4+ remained at steady state, we measured a 3-fold increase (0.055 S/m - 0.2 S/m) in σb in the iron-reducing column and a 10-fold increase in σb (0.07 S/m - 0.8 S/m) in the nitrate-reducing column over 198 days. The ionic strength in both reactors remained constant through time indicating that the measured increases in σb were not caused by changing effluent concentrations. PHREEQC successfully matched the measured changes in effluent concentrations for both columns when the reaction database was modified in the following manner. For the iron-reducing column, kinetic expressions governing the rate of iron reduction, the rate of bacterial growth, and the production of methane were added to the reaction database. Additionally, surface adsorption and cation exchange reactions were added so that the model was consistent with measured effluent chemistry. For the nitrate-reducing column, kinetic expressions governing nitrate reduction and bacterial growth were added to the reaction database. Additionally

  20. Controls on radium transport by adsorption to iron minerals

    Science.gov (United States)

    Chen, M.; Wang, T.; Kocar, B. D.

    2015-12-01

    Radium is a naturally occurring radioactive metal found in many subsurface environments. Radium isotopes are generated by uranium and thorium decay, and are particularly abundant within groundwaters where minimal porewater flux leads to accumulation. These isotopes are used as natural tracers for estimating submarine groundwater discharge (SGD) [1], allowing for large scale estimation of GW fluxes into and out of the ocean [2]. They also represent a substantial hazard in wastewater produced after hydraulic fracturing for natural gas extraction [3], resulting in a significant risk of environmental release to surface and near-surface waters, and increased cost for water treatment or disposal. Adsorption to mineral surfaces represents a dominant pathway of radium retention in subsurface environments. For SGD studies, adsorption processes impact estimates of GW fluxes, while in hydraulic fracturing, radium adsorption to aquifer solids mediates wastewater radium activities. Analysis of past sorption studies revealed large variability in partition coefficients [4], while examination of radium adsorption kinetics and surface complexation have only recently started [5]. Accordingly, we present the results of sorption and column experiments of radium with a suite of iron minerals representative of those found within deep saline and near-surface (freshwater) aquifers, and evaluate impacts of varying salinity solutions through artificial waters. Further, we explore the impacts of pyrite oxidation and ferrihydrite transformation to other iron-bearing secondary minerals on the transport and retention of radium. These results will provide critical information on the mineralogical controls on radium retention in subsurface environments, and will therefore improve predictions of radium groundwater transport in natural and contaminated systems. [1] Charette, M.A., Buesseler, K.O. & Andrews, J.E., Limnol. Oceanogr. (2001). [2] Moore, W.S., Ann. Rev. Mar. Sci. (2010). [3] Vengosh, A

  1. Heme uptake in bacterial pathogens

    OpenAIRE

    Contreras, Heidi; Chim, Nicholas; Credali, Alfredo; Goulding, Celia W.

    2014-01-01

    Iron is an essential nutrient for the survival of organisms. Bacterial pathogens possess specialized pathways to acquire heme from their human hosts. In this review, we present recent structural and biochemical data that provide mechanistic insights into several bacterial heme uptake pathways, encompassing the sequestration of heme from human hemoproteins to secreted or membrane-associated bacterial proteins, the transport of heme across bacterial membranes, and the degradation of heme within...

  2. Iron/argillite interactions in radioactive waste disposal context: Oxidising transient and bacterial activities influence

    International Nuclear Information System (INIS)

    The design of a high-level radioactive waste (HLW) disposal facility developed by Andra (2005) in France involves emplacing metallic materials (containers, overpacks, liner) into a geological argillaceous formation. During the operational phase, ventilation of handling drifts will keep oxidising conditions at the front of disposal tunnels. Therefore, an oxidising transient may take place in parts of these tunnels in the post-closure phase possibly over several years. During this transient period, the environment of the disposal cell will evolve towards reducing and saturated conditions close to the equilibrium state of the original underground argillaceous formation. Moreover, high temperature conditions above 50 deg. C may be encountered in this environment over a few hundred years. Uniform corrosion represents the main type of degradation of metallic materials for the long term. The oxidising transient will be characterised by high corrosion rates (e.g. localised corrosion) due to the presence of oxygen whereas during the following anoxic stage, the main alteration factor will originate from the pore water associated with lower corrosion rates. In any case, metallic materials corrosion will lead to the release of aqueous iron, which may induce alteration of the favourable confining properties of the clayey materials. In this context, reactive pathways related to the metal corrosion under oxidising conditions and then followed by reducing conditions remain to be further understood (evolution of pH, redox and influence of temperature). Furthermore, some other significant issues remain open, in particular the dissolution/precipitation processes, the argillite perturbation extent and the effects of these transformations on the confining properties of materials. The presence of micro-organisms in deep argillaceous environment and the introduction of new bacterial species in the repository during the operational phase raise the question of their survival under real

  3. Inhibition of bacterial oxidation of ferrous iron by lead nitrate in sulfate-rich systems

    Science.gov (United States)

    Wang, Hongmei; Gong, Linfeng; Cravotta, Charles A., III; Yang, Xiaofen; Tuovinen, Olli H.; Dong, Hailiang; Fu, Xiang

    2013-01-01

    Inhibition of bacterial oxidation of ferrous iron (Fe(II)) by Pb(NO3)2 was investigated with a mixed culture of Acidithiobacillus ferrooxidans. The culture was incubated at 30 °C in ferrous-sulfate medium amended with 0–24.2 mM Pb(II) added as Pb(NO3)2. Anglesite (PbSO4) precipitated immediately upon Pb addition and was the only solid phase detected in the abiotic controls. Both anglesite and jarosite (KFe3(SO4)2(OH)6) were detected in inoculated cultures. Precipitation of anglesite maintained dissolved Pb concentrations at 16.9–17.6 μM regardless of the concentrations of Pb(NO3)2 added. Fe(II) oxidation was suppressed by 24.2 mM Pb(NO3)2 addition even when anglesite was removed before inoculation. Experiments with 0–48 mM KNO3 demonstrated that bacterial Fe(II) oxidation decreased as nitrate concentration increased. Therefore, inhibition of Fe(II) oxidation at 24.2 mM Pb(NO3)2 addition resulted from nitrate toxicity instead of Pb addition. Geochemical modeling that considered the initial precipitation of anglesite to equilibrium followed by progressive oxidation of Fe(II) and the precipitation of jarosite and an amorphous iron hydroxide phase, without allowing plumbojarosite to precipitate were consistent with the experimental time-series data on Fe(II) oxidation under biotic conditions. Anglesite precipitation in mine tailings and other sulfate-rich systems maintains dissolved Pb concentrations below the toxicity threshold of A. ferrooxidans.

  4. Hepcidin Regulation of Iron Transport1–3

    OpenAIRE

    Collins, James F.; Wessling-Resnick, Marianne; Knutson, Mitchell D.

    2008-01-01

    The discovery of hepcidin as a key regulator of iron homeostasis has advanced our current knowledge of this field. Liver-derived hepcidin peptide is secreted in response to iron and inflammation and interacts with the iron export protein ferroportin. This review summarizes recent advances discussed at the Symposium. A particular focus is on molecular interactions between hepcidin and ferroportin, the regulation of hepcidin expression by iron and inflammation, and emerging methods to measure s...

  5. Optimization for vehicle scheduling in iron and steel works based on semi-trailer swap transport

    Institute of Scientific and Technical Information of China (English)

    CHENG Yao-rong; LIANG Bo; ZHOU Mei-hua

    2010-01-01

    In order to solve internal logistics problems of iron and steel works,such as low transportation efficiency of cehicles and high transportation cost,the production process and traditional transportation style of iron and steel work were introduced.The internal transport tasks of iron and steel works were grouped based on cluster analysis according to demand time of the transportation. An improved vehicle scheduling model of semi-trailer swap transport among loading nodes and unloading nodes in one task group was set up.The algorithm was designed to silve the vehicle routing problem with simultaneous pick-up and delivery (CRPSPD)problem based on semi-trailer swap transport.A solving program was written by MATLAB software and the method to figure out the optimal path of each grouping was obtainde.The dropping and pulling transportation plan of the tractor wan designed.And an decerase the numbers of semi-trailer swap transport in iron and steel works was given.The results indicate that semi-trailer swap transport can steel works,and the total distance traveled reduces by 43.5%.The semi-trailer swap transport can help the iron and steel works develop the productiong in intension.

  6. Structural model of FeoB, the iron transporter from Pseudomonas aeruginosa, predicts a cysteine lined, GTP-gated pore

    Science.gov (United States)

    Seyedmohammad, Saeed; Fuentealba, Natalia Alveal; Marriott, Robert A.J.; Goetze, Tom A.; Edwardson, J. Michael; Barrera, Nelson P.; Venter, Henrietta

    2016-01-01

    Iron is essential for the survival and virulence of pathogenic bacteria. The FeoB transporter allows the bacterial cell to acquire ferrous iron from its environment, making it an excellent drug target in intractable pathogens. The protein consists of an N-terminal GTP-binding domain and a C-terminal membrane domain. Despite the availability of X-ray crystal structures of the N-terminal domain, many aspects of the structure and function of FeoB remain unclear, such as the structure of the membrane domain, the oligomeric state of the protein, the molecular mechanism of iron transport, and how this is coupled to GTP hydrolysis at the N-terminal domain. In the present study, we describe the first homology model of FeoB. Due to the lack of sequence homology between FeoB and other transporters, the structures of four different proteins were used as templates to generate the homology model of full-length FeoB, which predicts a trimeric structure. We confirmed this trimeric structure by both blue-native-PAGE (BN-PAGE) and AFM. According to our model, the membrane domain of the trimeric protein forms a central pore lined by highly conserved cysteine residues. This pore aligns with a central pore in the N-terminal GTPase domain (G-domain) lined by aspartate residues. Biochemical analysis of FeoB from Pseudomonas aeruginosa further reveals a putative iron sensor domain that could connect GTP binding/hydrolysis to the opening of the pore. These results indicate that FeoB might not act as a transporter, but rather as a GTP-gated channel. PMID:26934982

  7. Structural model of FeoB, the iron transporter from Pseudomonas aeruginosa, predicts a cysteine lined, GTP-gated pore.

    Science.gov (United States)

    Seyedmohammad, Saeed; Fuentealba, Natalia Alveal; Marriott, Robert A J; Goetze, Tom A; Edwardson, J Michael; Barrera, Nelson P; Venter, Henrietta

    2016-04-01

    Iron is essential for the survival and virulence of pathogenic bacteria. The FeoB transporter allows the bacterial cell to acquire ferrous iron from its environment, making it an excellent drug target in intractable pathogens. The protein consists of an N-terminal GTP-binding domain and a C-terminal membrane domain. Despite the availability of X-ray crystal structures of the N-terminal domain, many aspects of the structure and function of FeoB remain unclear, such as the structure of the membrane domain, the oligomeric state of the protein, the molecular mechanism of iron transport, and how this is coupled to GTP hydrolysis at the N-terminal domain. In the present study, we describe the first homology model of FeoB. Due to the lack of sequence homology between FeoB and other transporters, the structures of four different proteins were used as templates to generate the homology model of full-length FeoB, which predicts a trimeric structure. We confirmed this trimeric structure by both blue-native-PAGE (BN-PAGE) and AFM. According to our model, the membrane domain of the trimeric protein forms a central pore lined by highly conserved cysteine residues. This pore aligns with a central pore in the N-terminal GTPase domain (G-domain) lined by aspartate residues. Biochemical analysis of FeoB from Pseudomonas aeruginosa further reveals a putative iron sensor domain that could connect GTP binding/hydrolysis to the opening of the pore. These results indicate that FeoB might not act as a transporter, but rather as a GTP-gated channel. PMID:26934982

  8. Changes of ferrous iron and its transporters after intracerebral hemorrhage in rats

    OpenAIRE

    Wang, Gaiqing; Shao, Anwen; Hu, Weimin; Xue, Fang; Zhao, Hongping; JIN Xiaojie; Li, Guanglai; Sun, Zhitang; Wang, Li

    2015-01-01

    Objective: Ferrous iron is a major source inducing oxidative stress after intracerebral hemorrhage (ICH). Divalent metal transporter1 (DMT1) is the important and well-known plasma membrane transport protein which was proved to be involved in the transport of free ferrous iron in mammals. Ferroportin 1 (FPN1) is the unique exporter of ferrous iron from mammalian cells. The role of DMT1 and FPN1 in brain after ICH is still not elucidated. Therefore, we measure the expression of DMT1 and FPN1, t...

  9. Inhibition of bacterial growth by iron oxide nanoparticles with and without attached drug: Have we conquered the antibiotic resistance problem?

    Science.gov (United States)

    Armijo, Leisha M.; Jain, Priyanka; Malagodi, Angelina; Fornelli, F. Zuly; Hayat, Allison; Rivera, Antonio C.; French, Michael; Smyth, Hugh D. C.; Osiński, Marek

    2015-03-01

    Pseudomonas aeruginosa is among the top three leading causative opportunistic human pathogens, possessing one of the largest bacterial genomes and an exceptionally large proportion of regulatory genes therein. It has been known for more than a decade that the size and complexity of the P. aeruginosa genome is responsible for the adaptability and resilience of the bacteria to include its ability to resist many disinfectants and antibiotics. We have investigated the susceptibility of P. aeruginosa bacterial biofilms to iron oxide (magnetite) nanoparticles (NPs) with and without attached drug (tobramycin). We also characterized the susceptibility of zero-valent iron NPs, which are known to inactivate microbes. The particles, having an average diameter of 16 nm were capped with natural alginate, thus doubling the hydrodynamic size. Nanoparticle-drug conjugates were produced via cross-linking drug and alginate functional groups. Drug conjugates were investigated in the interest of determining dosage, during these dosage-curve experiments, NPs unbound to drug were tested in cultures as a negative control. Surprisingly, we found that the iron oxide NPs inhibited bacterial growth, and thus, biofilm formation without the addition of antibiotic drug. The inhibitory dosages of iron oxide NPs were investigated and the minimum inhibitory concentrations are presented. These findings suggest that NP-drug conjugates may overcome the antibiotic drug resistance common in P. aeruginosa infections.

  10. Unusual Heme Binding in the Bacterial Iron Response Regulator Protein (Irr): Spectral Characterization of Heme Binding to Heme Regulatory Motif

    OpenAIRE

    Ishikawa, Haruto; Nakagaki, Megumi; Bamba, Ai; Uchida, Takeshi; Hori, Hiroshi; O'Brian, Mark R.; Iwai, Kazuhiro; Ishimori, Koichiro

    2011-01-01

    We characterized heme binding in the bacterial iron response regulator (Irr) protein, which is a simple heme-regulated protein having a single “heme-regulatory motif”, HRM, and plays a key role in the iron homeostasis of a nitrogen fixing bacterium. The heme titration to wild-type and mutant Irr clearly showed that Irr has two heme binding sites: one of the heme binding sites is in the HRM, where 29Cys is the axial ligand, and the other one, the secondary heme binding site, is located outside...

  11. Bacterial multidrug resistance mediated by a homologue of the human multidrug transporter P-glycoprotein

    NARCIS (Netherlands)

    Konings, WN; Poelarends, GJ

    2002-01-01

    Most ATP-binding cassette (ABC) multidrug transporters known to date are of eukaryotic origin, such as the P-glycoproteins (Pgps) and multidrug resistance-associated proteins (MRPs). Only one well-characterized ABC multidrug transporter, LmrA, is of bacterial origin. On the basis of its structural a

  12. Pivotal Role of Iron in the Regulation of Cyanobacterial Electron Transport.

    Science.gov (United States)

    González, A; Sevilla, E; Bes, M T; Peleato, M L; Fillat, M F

    2016-01-01

    Iron-containing metalloproteins are the main cornerstones for efficient electron transport in biological systems. The abundance and diversity of iron-dependent proteins in cyanobacteria makes those organisms highly dependent of this micronutrient. To cope with iron imbalance, cyanobacteria have developed a survey of adaptation strategies that are strongly related to the regulation of photosynthesis, nitrogen metabolism and other central electron transfer pathways. Furthermore, either in its ferrous form or as a component of the haem group, iron plays a crucial role as regulatory signalling molecule that directly or indirectly modulates the composition and efficiency of cyanobacterial redox reactions. We present here the major mechanism used by cyanobacteria to couple iron homeostasis to the regulation of electron transport, making special emphasis in processes specific in those organisms. PMID:27134024

  13. The role of Na/+/ in transport processes of bacterial membranes

    Science.gov (United States)

    Lanyi, J. K.

    1979-01-01

    Until recently it was generally held that transport in bacteria was linked exclusively to proton circulation, in contrast to most eucaryotic systems, which depended on Na(+) circulation. The present review is intended to trace recent developments which have led to the discarding of this idea. The discussion covers transport of Na(+) and other cations, effects of Na(+) and Na(+) gradients on metabolite transport, properties of Na(+)-dependent transport carriers, and evolutionary considerations of Na(+) transport. It is now apparent that the transport of Na(+) is an important part of energy metabolism in bacteria, and that Na(+) gradients as well as H(+) gradients are used in these systems for the conservation and transmission of energy. Two hypotheses are proposed to explain the evolution of Na/K systems, and it is presently difficult to decide between them.

  14. Helium, iron and electron particle transport and energy transport studies on the TFTR tokamak

    International Nuclear Information System (INIS)

    Results from helium, iron, and electron transport on TFTR in L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power are presented. They are compared to results from thermal transport analysis based on power balance. Particle diffusivities and thermal conductivities are radially hollow and larger than neoclassical values, except possibly near the magnetic axis. The ion channel dominates over the electron channel in both particle and thermal diffusion. A peaked helium profile, supported by inward convection that is stronger than predicted by neoclassical theory, is measured in the Supershot The helium profile shape is consistent with predictions from quasilinear electrostatic drift-wave theory. While the perturbative particle diffusion coefficients of all three species are similar in the Supershot, differences are found in the L-Mode. Quasilinear theory calculations of the ratios of impurity diffusivities are in good accord with measurements. Theory estimates indicate that the ion heat flux should be larger than the electron heat flux, consistent with power balance analysis. However, theoretical values of the ratio of the ion to electron heat flux can be more than a factor of three larger than experimental values. A correlation between helium diffusion and ion thermal transport is observed and has favorable implications for sustained ignition of a tokamak fusion reactor

  15. Helium, Iron and Electron Particle Transport and Energy Transport Studies on the TFTR Tokamak

    Science.gov (United States)

    Synakowski, E. J.; Efthimion, P. C.; Rewoldt, G.; Stratton, B. C.; Tang, W. M.; Grek, B.; Hill, K. W.; Hulse, R. A.; Johnson, D .W.; Mansfield, D. K.; McCune, D.; Mikkelsen, D. R.; Park, H. K.; Ramsey, A. T.; Redi, M. H.; Scott, S. D.; Taylor, G.; Timberlake, J.; Zarnstorff, M. C. (Princeton Univ., NJ (United States). Plasma Physics Lab.); Kissick, M. W. (Wisconsin Univ., Madison, WI (United States))

    1993-03-01

    Results from helium, iron, and electron transport on TFTR in L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power are presented. They are compared to results from thermal transport analysis based on power balance. Particle diffusivities and thermal conductivities are radially hollow and larger than neoclassical values, except possibly near the magnetic axis. The ion channel dominates over the electron channel in both particle and thermal diffusion. A peaked helium profile, supported by inward convection that is stronger than predicted by neoclassical theory, is measured in the Supershot The helium profile shape is consistent with predictions from quasilinear electrostatic drift-wave theory. While the perturbative particle diffusion coefficients of all three species are similar in the Supershot, differences are found in the L-Mode. Quasilinear theory calculations of the ratios of impurity diffusivities are in good accord with measurements. Theory estimates indicate that the ion heat flux should be larger than the electron heat flux, consistent with power balance analysis. However, theoretical values of the ratio of the ion to electron heat flux can be more than a factor of three larger than experimental values. A correlation between helium diffusion and ion thermal transport is observed and has favorable implications for sustained ignition of a tokamak fusion reactor.

  16. Iron

    Science.gov (United States)

    Iron is a mineral that our bodies need for many functions. For example, iron is part of hemoglobin, a protein which carries ... It helps our muscles store and use oxygen. Iron is also part of many other proteins and ...

  17. Interactions between bacteria and solid surfaces in relation to bacterial transport in porous media.

    OpenAIRE

    Rijnaarts, H.H.M.

    1994-01-01

    Interactions between bacteria and solid surfaces strongly influence the behaviour of bacteria in natural and engineered ecosystems. Many biofilm reactors and terrestrial environments are porous media. The purpose of the research presented in this thesis is to gain a better insight into the basic mechanims of bacterial adhesion and transport in such systems. This knowledge is essential for bacterial adhesion science in general, and important for practical applications such as the bioremediatio...

  18. Lessons learned from bacterial transport research at the South Oyster Site

    Energy Technology Data Exchange (ETDEWEB)

    Scheibe, T.; Hubbard, S.S.; Onstott, T.C.; DeFlaun, M.F.

    2011-04-01

    This paper provides a review of bacterial transport experiments conducted by a multi-investigator, multi-institution, multi-disciplinary team of researchers under the auspices of the U. S. Department of Energy (DOE). The experiments were conducted during the time period 1999-2001 at a field site near the town of Oyster, Virginia known as the South Oyster Site, and included four major experimental campaigns aimed at understanding and quantifying bacterial transport in the subsurface environment. Several key elements of the research are discussed here: (1) quantification of bacterial transport in physically, chemically and biologically heterogeneous aquifers, (2) evaluation of the efficacy of conventional colloid filtration theory, (3) scale effects in bacterial transport, (4) development of new methods for microbial enumeration and screening for low adhesion strains, (5) application of novel hydrogeophysical techniques for aquifer characterization, and (6) experiences regarding management of a large field research effort. Lessons learned are summarized in each of these areas. The body of literature resulting from South Oyster Site research has been widely cited and continues to influence research into the controls exerted by aquifer heterogeneity on reactive transport (including microbial transport). It also served as a model (and provided valuable experience) for subsequent and ongoing highly-instrumented field research efforts conducted by DOE-sponsored investigators.

  19. Determination of serum iron and of the transport capacity of iron by transferrin

    International Nuclear Information System (INIS)

    Three methods were standardized in order to determine the iron level in serum, the total iron binding capacity of transferrin and the iron binding capacity of free transferrin. The first of them, appropriate to estimate iron and total transferrin level, is based on the development of color as a consequence of iron binding to bathophenanthrolin (BATO); the second, used for the same purposes, employs atomic absorption spectrophotometry (AA); the third, used to estimate free transferrin, is a radioassay (RE). It was known that the methods employing atomic absorption espectrophotometry and radioassay are precise and especific, while the use of bathophenanthrolin constantly provides differing results. This was the reason why statistic analysis of the results showed significant differences between the first method (BATO) and the remaining two (RE and AA). Nevertheless, the fluctuation of results observed with the use of bathophenanthrolin is small (less than 10%), the method is easy to perform and it is not dispendious concerning reagents as well as equipament. Therefore it was concluded that the BATO method is very safe when used for diagnosis of iron deficiency or excess of storage, even of low magnitude. (Author)

  20. Influence of short distance transportation on tracheal bacterial content and lower airway cytology in horses.

    Science.gov (United States)

    Allano, Marion; Labrecque, Olivia; Rodriguez Batista, Edisleidy; Beauchamp, Guy; Bédard, Christian; Lavoie, Jean-Pierre; Leclere, Mathilde

    2016-08-01

    The aim of this study was to determine the effects of short distance transportation on airway mucus, cytology and bacterial culture to identify potential biases in the diagnosis of airway diseases in referral centres. Eight healthy adult horses were studied using a prospective cross-over design. Mucus scores, tracheal wash (cytology, bacterial culture) and bronchoalveolar lavage fluid (BALF; cytology) were obtained while stabled and following 2.5 h transportation (with and without hay). Neutrophil counts, percentages and BALF neutrophilia frequency increased following transport without hay (P  0.05). BALF neutrophilia could develop solely as a result of transportation or due to interactions between repeated transports, ambient temperature, head position or other environmental factors. PMID:27387726

  1. Homeostatic interplay between bacterial cell-cell signaling and iron in virulence.

    Directory of Open Access Journals (Sweden)

    Ronen Hazan

    2010-03-01

    Full Text Available Pathogenic bacteria use interconnected multi-layered regulatory networks, such as quorum sensing (QS networks to sense and respond to environmental cues and external and internal bacterial cell signals, and thereby adapt to and exploit target hosts. Despite the many advances that have been made in understanding QS regulation, little is known regarding how these inputs are integrated and processed in the context of multi-layered QS regulatory networks. Here we report the examination of the Pseudomonas aeruginosa QS 4-hydroxy-2-alkylquinolines (HAQs MvfR regulatory network and determination of its interaction with the QS acyl-homoserine-lactone (AHL RhlR network. The aim of this work was to elucidate paradigmatically the complex relationships between multi-layered regulatory QS circuitries, their signaling molecules, and the environmental cues to which they respond. Our findings revealed positive and negative homeostatic regulatory loops that fine-tune the MvfR regulon via a multi-layered dependent homeostatic regulation of the cell-cell signaling molecules PQS and HHQ, and interplay between these molecules and iron. We discovered that the MvfR regulon component PqsE is a key mediator in orchestrating this homeostatic regulation, and in establishing a connection to the QS rhlR system in cooperation with RhlR. Our results show that P. aeruginosa modulates the intensity of its virulence response, at least in part, through this multi-layered interplay. Our findings underscore the importance of the homeostatic interplay that balances competition within and between QS systems via cell-cell signaling molecules and environmental cues in the control of virulence gene expression. Elucidation of the fine-tuning of this complex relationship offers novel insights into the regulation of these systems and may inform strategies designed to limit infections caused by P. aeruginosa and related human pathogens.

  2. Hepatocyte divalent metal-ion transporter-1 is dispensable for hepatic iron accumulation and non-transferrin-bound iron uptake in mice

    OpenAIRE

    Wang, Chia-Yu; Knutson, Mitchell D.

    2013-01-01

    Divalent metal-ion transporter-1 (DMT1) is required for iron uptake by the intestine and developing erythroid cells. DMT1 is also present in the liver, where it has been implicated in the uptake of transferrin-bound iron (TBI) and non-transferrin-bound iron (NTBI), which appears in the plasma during iron overload. To test the hypothesis that DMT1 is required for hepatic iron uptake, we examined mice with the Dmt1 gene selectively inactivated in hepatocytes (Dmt1liv/liv). We found that Dmt1liv...

  3. Sources, transport and deposition of iron in the global atmosphere

    Directory of Open Access Journals (Sweden)

    R. Wang

    2015-03-01

    Full Text Available Atmospheric deposition of iron (Fe plays an important role in controlling oceanic primary productivity. However, the sources of Fe in the atmosphere are not well understood. In particular, the combustion sources of Fe and their deposition over oceans are not accounted for in current biogeochemical models of the carbon cycle. Here we used a mass-balance method to estimate the emissions of Fe from the combustion of fossil fuels and biomass by accounting for the Fe contents in fuel and the partitioning of Fe during combustion. The emissions of Fe attached to aerosols from combustion sources were estimated by particle size, and their uncertainties were quantified by a Monte Carlo simulation. The emissions of Fe from mineral sources were estimated using the latest soil mineralogical database to date. As a result, the total Fe emissions from combustion averaged for 1960–2007 were estimated to be 5.1 Tg yr−1 (90% confidence of 2.2 to 11.5. Of these emissions, 2, 33 and 65% were emitted in particles 1, 1–10 μm (PM1−10, and >10 μm (PM>10, respectively, compared to total Fe emissions from mineral sources of 41.0 Tg yr−1. For combustion sources, different temporal trends were found in fine and medium-to-coarse particles, with a notable increase in Fe emissions in PM1 and PM1−10 since 2000 due to a rapid increase from motor vehicles. These emissions have been introduced in a global 3-D transport model run at a spatial resolution of of 0.94° latitude by 1.28° longitude to evaluate our estimation of Fe emissions. The modelled Fe concentrations were compared to measurements at 825 sampling stations. The deviation between modelled and observed Fe concentrations attached to aerosols at the surface was within a factor of two at most sampling stations, and the deviation was within a factor of 1.5 at sampling stations dominated by combustion sources. We analyzed the relative contribution of combustion sources to total Fe concentrations over

  4. Sources, transport and deposition of iron in the global atmosphere

    Science.gov (United States)

    Wang, R.; Balkanski, Y.; Boucher, O.; Bopp, L.; Chappell, A.; Ciais, P.; Hauglustaine, D.; Peñuelas, J.; Tao, S.

    2015-06-01

    Atmospheric deposition of iron (Fe) plays an important role in controlling oceanic primary productivity. However, the sources of Fe in the atmosphere are not well understood. In particular, the combustion sources of Fe and the subsequent deposition to the oceans have been accounted for in only few ocean biogeochemical models of the carbon cycle. Here we used a mass-balance method to estimate the emissions of Fe from the combustion of fossil fuels and biomass by accounting for the Fe contents in fuel and the partitioning of Fe during combustion. The emissions of Fe attached to aerosols from combustion sources were estimated by particle size, and their uncertainties were quantified by a Monte Carlo simulation. The emissions of Fe from mineral sources were estimated using the latest soil mineralogical database to date. As a result, the total Fe emissions from combustion averaged for 1960-2007 were estimated to be 5.3 Tg yr-1 (90% confidence of 2.3 to 12.1). Of these emissions, 1, 27 and 72% were emitted in particles 10 μm (PM> 10), respectively, compared to a total Fe emission from mineral dust of 41.0 Tg yr-1 in a log-normal distribution with a mass median diameter of 2.5 μm and a geometric standard deviation of 2. For combustion sources, different temporal trends were found in fine and medium-to-coarse particles, with a notable increase in Fe emissions in PM1 since 2000 due to an increase in Fe emission from motor vehicles (from 0.008 to 0.0103 Tg yr-1 in 2000 and 2007, respectively). These emissions have been introduced in a global 3-D transport model run at a spatial resolution of 0.94° latitude by 1.28° longitude to evaluate our estimation of Fe emissions. The modelled Fe concentrations as monthly means were compared with the monthly (57 sites) or daily (768 sites) measured concentrations at a total of 825 sampling stations. The deviation between modelled and observed Fe concentrations attached to aerosols at the surface was within a factor of 2 at most

  5. Ndfip2 is a potential regulator of the iron transporter DMT1 in the liver

    Science.gov (United States)

    Foot, Natalie J.; Gembus, Kelly M.; Mackenzie, Kimberly; Kumar, Sharad

    2016-01-01

    The regulation of divalent metal ion transporter DMT1, the primary non-heme iron importer in mammals, is critical for maintaining iron homeostasis. Previously we identified ubiquitin-dependent regulation of DMT1 involving the Nedd4 family of ubiquitin ligases and the Ndfip1 and Ndfip2 adaptors. We also established the in vivo function of Ndfip1 in the regulation of DMT1 in the duodenum of mice. Here we have studied the function of Ndfip2 using Ndfip2-deficient mice. The DMT1 protein levels in the duodenum were comparable in wild type and Ndfip2−/− mice, as was the transport activity of isolated enterocytes. A complete blood examination showed no significant differences between wild type and Ndfip2−/− mice in any of the hematological parameters measured. However, when fed a low iron diet, female Ndfip2−/− mice showed a decrease in liver iron content, although they maintained normal serum iron levels and transferrin saturation, compared to wild type female mice that showed a reduction in serum iron and transferrin saturation. Ndfip2−/− female mice also showed an increase in DMT1 expression in the liver, with no change in male mice. We suggest that Ndfip2 controls DMT1 in the liver with female mice showing a greater response to altered dietary iron than the male mice. PMID:27048792

  6. BACTERIAL SOLUTE TRANSPORT PROTEINS IN THEIR LIPID ENVIRONMENT

    NARCIS (Netherlands)

    TVELD, GI; DRIESSEN, AJM; KONINGS, WN; Veld, Gerda in 't

    1993-01-01

    The cytoplasmic membrane of bacteria is a selective barrier that restricts entry and exit of solutes. Transport of solutes across this membrane is catalyzed by specific membrane proteins. Integral membrane proteins usually require specific lipids for optimal activity and are inhibited by other lipid

  7. The effect of wheat prebiotics on the gut bacterial population and iron status of iron deficient broiler chickens

    Science.gov (United States)

    In recent years, there is a lot of interest in improving the intestinal health, and consequently increasing minerals as iron absorption, by managing the intestinal microbial population. This is traditionally done by the consumption of probiotics, which are live microbial food supplements. However, a...

  8. Antidepressant Binding Site in a Bacterial Homologue of Neurotransmitter Transporters

    Energy Technology Data Exchange (ETDEWEB)

    Singh,S.; Yamashita, A.; Gouaux, E.

    2007-01-01

    Sodium-coupled transporters are ubiquitous pumps that harness pre-existing sodium gradients to catalyse the thermodynamically unfavourable uptake of essential nutrients, neurotransmitters and inorganic ions across the lipid bilayer. Dysfunction of these integral membrane proteins has been implicated in glucose/galactose malabsorption, congenital hypothyroidism, Bartter's syndrome, epilepsy, depression, autism and obsessive-compulsive disorder. Sodium-coupled transporters are blocked by a number of therapeutically important compounds, including diuretics, anticonvulsants and antidepressants, many of which have also become indispensable tools in biochemical experiments designed to probe antagonist binding sites and to elucidate transport mechanisms. Steady-state kinetic data have revealed that both competitive and noncompetitive modes of inhibition exist. Antagonist dissociation experiments on the serotonin transporter (SERT) have also unveiled the existence of a low-affinity allosteric site that slows the dissociation of inhibitors from a separate high-affinity site. Despite these strides, atomic-level insights into inhibitor action have remained elusive. Here we screen a panel of molecules for their ability to inhibit LeuT, a prokaryotic homologue of mammalian neurotransmitter sodium symporters, and show that the tricyclic antidepressant (TCA) clomipramine noncompetitively inhibits substrate uptake. Cocrystal structures show that clomipramine, along with two other TCAs, binds in an extracellular-facing vestibule about 11 {angstrom} above the substrate and two sodium ions, apparently stabilizing the extracellular gate in a closed conformation. Off-rate assays establish that clomipramine reduces the rate at which leucine dissociates from LeuT and reinforce our contention that this TCA inhibits LeuT by slowing substrate release. Our results represent a molecular view into noncompetitive inhibition of a sodium-coupled transporter and define principles for the

  9. Antidepressant binding site in a bacterial homologue of neurotransmitter transporters.

    Science.gov (United States)

    Singh, Satinder K; Yamashita, Atsuko; Gouaux, Eric

    2007-08-23

    Sodium-coupled transporters are ubiquitous pumps that harness pre-existing sodium gradients to catalyse the thermodynamically unfavourable uptake of essential nutrients, neurotransmitters and inorganic ions across the lipid bilayer. Dysfunction of these integral membrane proteins has been implicated in glucose/galactose malabsorption, congenital hypothyroidism, Bartter's syndrome, epilepsy, depression, autism and obsessive-compulsive disorder. Sodium-coupled transporters are blocked by a number of therapeutically important compounds, including diuretics, anticonvulsants and antidepressants, many of which have also become indispensable tools in biochemical experiments designed to probe antagonist binding sites and to elucidate transport mechanisms. Steady-state kinetic data have revealed that both competitive and noncompetitive modes of inhibition exist. Antagonist dissociation experiments on the serotonin transporter (SERT) have also unveiled the existence of a low-affinity allosteric site that slows the dissociation of inhibitors from a separate high-affinity site. Despite these strides, atomic-level insights into inhibitor action have remained elusive. Here we screen a panel of molecules for their ability to inhibit LeuT, a prokaryotic homologue of mammalian neurotransmitter sodium symporters, and show that the tricyclic antidepressant (TCA) clomipramine noncompetitively inhibits substrate uptake. Cocrystal structures show that clomipramine, along with two other TCAs, binds in an extracellular-facing vestibule about 11 A above the substrate and two sodium ions, apparently stabilizing the extracellular gate in a closed conformation. Off-rate assays establish that clomipramine reduces the rate at which leucine dissociates from LeuT and reinforce our contention that this TCA inhibits LeuT by slowing substrate release. Our results represent a molecular view into noncompetitive inhibition of a sodium-coupled transporter and define principles for the rational design of

  10. Antidepressant Binding Site in a Bacterial Homologue of Neurotransmitter Transporters

    International Nuclear Information System (INIS)

    Sodium-coupled transporters are ubiquitous pumps that harness pre-existing sodium gradients to catalyse the thermodynamically unfavourable uptake of essential nutrients, neurotransmitters and inorganic ions across the lipid bilayer. Dysfunction of these integral membrane proteins has been implicated in glucose/galactose malabsorption, congenital hypothyroidism, Bartter's syndrome, epilepsy, depression, autism and obsessive-compulsive disorder. Sodium-coupled transporters are blocked by a number of therapeutically important compounds, including diuretics, anticonvulsants and antidepressants, many of which have also become indispensable tools in biochemical experiments designed to probe antagonist binding sites and to elucidate transport mechanisms. Steady-state kinetic data have revealed that both competitive and noncompetitive modes of inhibition exist. Antagonist dissociation experiments on the serotonin transporter (SERT) have also unveiled the existence of a low-affinity allosteric site that slows the dissociation of inhibitors from a separate high-affinity site. Despite these strides, atomic-level insights into inhibitor action have remained elusive. Here we screen a panel of molecules for their ability to inhibit LeuT, a prokaryotic homologue of mammalian neurotransmitter sodium symporters, and show that the tricyclic antidepressant (TCA) clomipramine noncompetitively inhibits substrate uptake. Cocrystal structures show that clomipramine, along with two other TCAs, binds in an extracellular-facing vestibule about 11 (angstrom) above the substrate and two sodium ions, apparently stabilizing the extracellular gate in a closed conformation. Off-rate assays establish that clomipramine reduces the rate at which leucine dissociates from LeuT and reinforce our contention that this TCA inhibits LeuT by slowing substrate release. Our results represent a molecular view into noncompetitive inhibition of a sodium-coupled transporter and define principles for the rational

  11. The impact of engineered cobalt, iron, nickel and silver nanoparticles on soil bacterial diversity under field conditions

    International Nuclear Information System (INIS)

    Our understanding of how engineered nanoparticles (NPs) migrate through soil and affect microbial communities is scarce. In the current study we examined how metal NPs, including those from the iron triad (iron, cobalt and nickel), moved through pots of soil maintained under winter field conditions for 50 days, when mesophilic bacteria may not be dividing. Based on total metal analysis, cobalt and nickel were localized in the top layer of soil, even after exposure to high precipitation and freeze–thaw cycles. In contrast, a bimodal distribution of silver was observed. Due to high endogenous levels of iron, the migration pattern of these NPs could not be determined. Pyrosequence analysis of the bacterial communities revealed that there was no significant engineered NP-mediated decline in microbial richness. However, analysis of individual genera showed that Sphingomonas and Lysobacter were represented by fewer sequences in horizons containing elevated metal levels whereas there was an increase in the numbers of Flavobacterium and Niastella. Collectively, the results indicate that along with the differential migration behavior of NPs in the soil matrix, their impact on soil bacterial diversity appears to be dependent on environmental parameters. (paper)

  12. Impact of biofilm on bacterial transport and deposition in porous media.

    Science.gov (United States)

    Bozorg, Ali; Gates, Ian D; Sen, Arindom

    2015-12-01

    Laboratory scale experiments were conducted to obtain insights into factors that influence bacterial transport and deposition in porous media. According to colloidal filtration theory, the removal efficiency of a filter medium is characterized by two main factors: collision efficiency and sticking efficiency. In the case of bacterial transport in porous media, bacteria attached to a solid surface can establish a thin layer of biofilm by excreting extracellular polymeric substances which can significantly influence both of these factors in a porous medium, and thus, affect the overall removal efficiency of the filter medium. However, such polymeric interactions in bacterial adhesion are not well understood and a method to calculate polymeric interactions is not yet available. Here, to determine how the migration of bacteria flowing within a porous medium is affected by the presence of surface-associated extracellular polymeric substances previously produced and deposited by the same bacterial species, a commonly used colloidal filtration model was applied to study transport and deposition of Pseudomonas fluorescens in small-scale columns packed with clean and biofilm coated glass beads. Bacterial recoveries were monitored in column effluents and used to quantify biofilm interactions and sticking efficiencies of the biofilm coated packed-beds. The results indicated that, under identical hydraulic conditions, the sticking efficiencies in packed-beds were improved consistently by 36% when covered by biofilm. PMID:26583740

  13. Impact of biofilm on bacterial transport and deposition in porous media

    Science.gov (United States)

    Bozorg, Ali; Gates, Ian D.; Sen, Arindom

    2015-12-01

    Laboratory scale experiments were conducted to obtain insights into factors that influence bacterial transport and deposition in porous media. According to colloidal filtration theory, the removal efficiency of a filter medium is characterized by two main factors: collision efficiency and sticking efficiency. In the case of bacterial transport in porous media, bacteria attached to a solid surface can establish a thin layer of biofilm by excreting extracellular polymeric substances which can significantly influence both of these factors in a porous medium, and thus, affect the overall removal efficiency of the filter medium. However, such polymeric interactions in bacterial adhesion are not well understood and a method to calculate polymeric interactions is not yet available. Here, to determine how the migration of bacteria flowing within a porous medium is affected by the presence of surface-associated extracellular polymeric substances previously produced and deposited by the same bacterial species, a commonly used colloidal filtration model was applied to study transport and deposition of Pseudomonas fluorescens in small-scale columns packed with clean and biofilm coated glass beads. Bacterial recoveries were monitored in column effluents and used to quantify biofilm interactions and sticking efficiencies of the biofilm coated packed-beds. The results indicated that, under identical hydraulic conditions, the sticking efficiencies in packed-beds were improved consistently by 36% when covered by biofilm.

  14. Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition▿†

    OpenAIRE

    Wang, Yun; Wilks, Jessica C.; Danhorn, Thomas; Ramos, Itzel; Croal, Laura; Newman, Dianne K.

    2011-01-01

    The opportunistic pathogen Pseudomonas aeruginosa forms biofilms, which render it more resistant to antimicrobial agents. Levels of iron in excess of what is required for planktonic growth have been shown to promote biofilm formation, and therapies that interfere with ferric iron [Fe(III)] uptake combined with antibiotics may help treat P. aeruginosa infections. However, use of these therapies presumes that iron is in the Fe(III) state in the context of infection. Here we report the ability o...

  15. Draft ASME code case on ductile cast iron for transport packaging

    International Nuclear Information System (INIS)

    The current Rules for Construction of ''Containment Systems for Storage and Transport Packagings of Spent Nuclear Fuel and High Level Radioactive Material and Waste'' of Division 3 in Section III of ASME Code (2001 Edition) does not include ductile cast iron in its list of materials permitted for use. The Rules specify required fracture toughness values of ferritic steel material for nominal wall thickness 5/8 to 12 inches (16 to 305 mm). New rule for ductile cast iron for transport packaging of which wall thickness is greater than 12 inches (305mm) is required

  16. Iron

    Science.gov (United States)

    ... seafood, and foods that contain vitamin C , like citrus fruits, strawberries, sweet peppers, tomatoes, and broccoli. What ... diets. What are some effects of iron on health? Scientists are studying iron to understand how it ...

  17. Iron

    DEFF Research Database (Denmark)

    Hansen, Jakob Bondo; Moen, I W; Mandrup-Poulsen, T

    2014-01-01

    The interest in the role of ferrous iron in diabetes pathophysiology has been revived by recent evidence of iron as an important determinant of pancreatic islet inflammation and as a biomarker of diabetes risk and mortality. The iron metabolism in the β-cell is complex. Excess free iron is toxic......, but at the same time, iron is required for normal β-cell function and thereby glucose homeostasis. In the pathogenesis of diabetes, iron generates reactive oxygen species (ROS) by participating in the Fenton chemistry, which can induce oxidative damage and apoptosis. The aim of this review is to...... present and discuss recent evidence, suggesting that iron is a key pathogenic factor in both type 1 and type 2 diabetes with a focus on inflammatory pathways. Pro-inflammatory cytokine-induced β-cell death is not fully understood, but may include iron-induced ROS formation resulting in dedifferentiation...

  18. Interdependence between iron ore production and maritime transport

    Directory of Open Access Journals (Sweden)

    A. V. Todorut

    2016-10-01

    Full Text Available The maritime industry plays an important role in international trade, transporting a total of 10,1 billion tons of merchandise in 2015, representing over 80% of all global trade, with dry cargo estimated to account for over two thirds of the total seaborne trade. Bulk carriers supply the raw materials needed by the steel industry and container ships transport the steel products. Demand and supply for seaborne transport is influenced by trends in global economy and worldwide demand for commodities. The paper analyzes the most important economic determinants in the supply of metallurgical raw materials, highlighting the importance of the shipping sector.

  19. Facilitated transport of heavy metals by bacterial colloids in sand columns

    Science.gov (United States)

    Guiné, V.; Martins, J.; Gaudet, J. P.

    2003-05-01

    The aim of this work is to evaluate the ability of biotic collois (e.g. bacterial cells) to facilitate the transport of heavy metals in soils. and to identify the main factors influencing colloid transport in order to detelmine the geo-chemical conditions where this secondary transport process may become dominant. The model colloids studied here are living cells of Escherichia coli and Ralstonia metallidurans. We studied the transport of mercury zinc, and cadmium in columns of Fontainebleau sand. The properties (i.e. optical and morphological properties, charge (zeta potential, zeta) and hydrophobia (water/hexadecane distribution parameter, K_{hw})) of the bacterial cells surface were characterised, as well as their potential for heavy metals sorption (kinetic and isotherm). Both surface charge (zeta=-54 and -14 mV) and hydrophobia (K_{hw} = 0.25 and 0.05) differ strongly for the two bacteria. Column studies were conducted with bacteria and heavy metals separately or simultaneously. The cell surface differences led to different transport behaviour of the two bacteria, although the retardation factor is close to 1 for both. We observed that colloid mobility increases when increasing bacterial cells concentration and when decreasing the ionic strength. We also observed that bacterial colloids appeared as excellent vectors for Hg, Zn and Cd. Indeed, heavy metals adsorbed on the Fontainebleau sand when injected alone in columns (retardation factors of 1.4 ; 2.9 and 3.8 for Hg, Zn and Cd, respectively); whereas no retardation (R≈1) is observed when injected in the presence of both bacteria. Moreover, transport of bio-sorbed metal appears to be 4 to 6 times higher than dissolved heavy-metal.

  20. The Bradyrhizobium japonicum Ferrous Iron Transporter FeoAB Is Required for Ferric Iron Utilization in Free Living Aerobic Cells and for Symbiosis.

    Science.gov (United States)

    Sankari, Siva; O'Brian, Mark R

    2016-07-22

    The bacterium Bradyrhizobium japonicum USDA110 does not synthesize siderophores for iron utilization in aerobic environments, and the mechanism of iron uptake within symbiotic soybean root nodules is unknown. An mbfA bfr double mutant defective in iron export and storage activities cannot grow aerobically in very high iron medium. Here, we found that this phenotype was suppressed by loss of function mutations in the feoAB operon encoding ferrous (Fe(2+)) iron uptake proteins. Expression of the feoAB operon genes was elevated under iron limitation, but mutants defective in either gene were unable to grow aerobically over a wide external ferric (Fe(3+)) iron (FeCl3) concentration range. Thus, FeoAB accommodates iron acquisition under iron limited and iron replete conditions. Incorporation of radiolabel from either (55)Fe(2+) or (59)Fe(3+) into cells was severely defective in the feoA and feoB strains, suggesting Fe(3+) reduction to Fe(2+) prior to traversal across the cytoplasmic membrane by FeoAB. The feoA or feoB deletion strains elicited small, ineffective nodules on soybean roots, containing few bacteria and lacking nitrogen fixation activity. A feoA(E40K) mutant contained partial iron uptake activity in culture that supported normal growth and established an effective symbiosis. The feoA(E40K) strain had partial iron uptake activity in situ within nodules and in isolated cells, indicating that FeoAB is the iron transporter in symbiosis. We conclude that FeoAB supports iron acquisition under limited conditions of soil and in the iron-rich environment of a symbiotic nodule. PMID:27288412

  1. Iron transport, deposition and bioavailability in the wheat and barley grain

    DEFF Research Database (Denmark)

    Borg, Søren; Brinch-Pedersen, Henrik; Tauris, Birgitte; Holm, Preben B

    briefly review existing knowledge on the distribution and transport pathways of iron in the two small grained cereals, barley and wheat, and focus on the efforts made to increase the iron content in cereals in general. However, mineral content is not the only factor of relevance for improving the...... nutritional impact of increasing mineral content accordingly has to be seen in the context of mineral bioavailability. Finally, we will briefly report on recent data from barley, where laser capture microdissection of the different grain tissues combined with gene expression profiling has provided some...... insight into metal transport and deposition (Tauris et al. 2009). In the present paper we will provide a tentative and preliminary roadmap for iron trafficking in the barley grain...

  2. Numerical prediction of diffusion and electric field-induced iron nanoparticle transport

    OpenAIRE

    Gomes, Helena I.; Rodríguez-Maroto, José Miguel; Ribeiro, Alexandra B.; Pamukcu, Sibel; Dias-Ferreira, Celia

    2014-01-01

    Zero valent iron nanoparticles (nZVI) are considered very promising for the remediation of contaminated soils and groundwaters. However, an important issue related to their limited mobility remains unsolved. Direct current can be used to enhance the nanoparticles transport, based on the same principles of electrokinetic remediation. In this work, a generalized physicochemical model was developed and solved numerically to describe the nZVI transport through porous media under electric field, a...

  3. Localisation of divalent metal transporter 1 (DMT1) to the microvillus membrane of rat duodenal enterocytes in iron deficiency, but to hepatocytes in iron overload

    OpenAIRE

    Trinder, D.; P.; Oates; Thomas, C; Sadleir, J.; Morgan, E.

    2000-01-01

    BACKGROUND—The mechanism of iron absorption by the intestine and its transfer to the main iron storage site, the liver, is poorly understood. Recently an iron carrier was cloned and named DMT1 (divalent metal transporter 1).
AIMS—To determine the level of DMT1 gene expression and protein distribution in duodenum and liver.
METHODS—A DMT1 cRNA and antibody were produced and used in in situ hybridisation and immunohistochemistry, respectively, in rats in which the iron stores were altered by fe...

  4. Structure of the basal components of a bacterial transporter

    Energy Technology Data Exchange (ETDEWEB)

    Meisner, Jeffrey; Maehigashi, Tatsuya; André, Ingemar; Dunham, Christine M.; Moran, Jr., Charles P. (Emory-MED); (Lund)

    2012-12-10

    Proteins SpoIIQ and SpoIIIAH interact through two membranes to connect the forespore and the mother cell during endospore development in the bacterium Bacillus subtilis. SpoIIIAH consists of a transmembrane segment and an extracellular domain with similarity to YscJ proteins. YscJ proteins form large multimeric rings that are the structural scaffolds for the assembly of type III secretion systems in Gram-negative bacteria. The predicted ring-forming motif of SpoIIIAH and other evidence led to the model that SpoIIQ and SpoIIIAH form the core components of a channel or transporter through which the mother cell nurtures forespore development. Therefore, to understand the roles of SpoIIIAH and SpoIIQ in channel formation, it is critical to determine whether SpoIIIAH adopts a ring-forming structural motif, and whether interaction of SpoIIIAH with SpoIIQ would preclude ring formation. We report a 2.8-{angstrom} resolution structure of a complex of SpoIIQ and SpoIIIAH. SpoIIIAH folds into the ring-building structural motif, and modeling shows that the structure of the SpoIIQ-SpoIIIAH complex is compatible with forming a symmetrical oligomer that is similar to those in type III systems. The inner diameters of the two most likely ring models are large enough to accommodate several copies of other integral membrane proteins. SpoIIQ contains a LytM domain, which is found in metalloendopeptidases, but lacks residues important for metalloprotease activity. Other LytM domains appear to be involved in protein-protein interactions. We found that the LytM domain of SpoIIQ contains an accessory region that interacts with SpoIIIAH.

  5. Hydrogeological characterization of the South Oyster bacterial transport site using geophysical data

    Science.gov (United States)

    Hubbard, Susan S.; Chen, Jinsong; Peterson, John; Majer, Ernest L.; Williams, Kenneth H.; Swift, Donald J.; Mailloux, Brian; Rubin, Yoram

    2001-10-01

    A multidisciplinary research team has conducted a field-scale bacterial transport study within an uncontaminated sandy Pleistocene aquifer near Oyster, Virginia. The overall goal of the project was to evaluate the importance of heterogeneities in controlling the field-scale transport of bacteria that are injected into the ground for remediation purposes. Geochemical, hydrological, geological, and geophysical data were collected to characterize the site prior to conducting chemical and bacterial injection experiments. In this paper we focus on results of a hydrogeological characterization effort using geophysical data collected across a range of spatial scales. The geophysical data employed include surface ground-penetrating radar, radar cross-hole tomography, seismic cross-hole tomography, cone penetrometer, and borehole electromagnetic flowmeter. These data were used to interpret the subregional and local stratigraphy, to provide high-resolution hydraulic conductivity estimates, and to provide information about the log conductivity spatial correlation function. The information from geophysical data was used to guide and assist the field operations and to constrain the numerical bacterial transport model. Although more field work of this nature is necessary to validate the usefulness and cost-effectiveness of including geophysical data in the characterization effort, qualitative and quantitative comparisons between tomographically obtained flow and transport parameter estimates with hydraulic well bore and bromide breakthrough measurements suggest that geophysical data can provide valuable, high-resolution information. This information, traditionally only partially obtainable by performing extensive and intrusive well bore sampling, may help to reduce the ambiguity associated with hydrogeological heterogeneity that is often encountered when interpreting field-scale bacterial transport data.

  6. Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments

    Science.gov (United States)

    He, Didi; Hughes, Sam; Vanden-Hehir, Sally; Georgiev, Atanas; Altenbach, Kirsten; Tarrant, Emma; Mackay, C Logan; Waldron, Kevin J; Clarke, David J; Marles-Wright, Jon

    2016-01-01

    Ferritins are ubiquitous proteins that oxidise and store iron within a protein shell to protect cells from oxidative damage. We have characterized the structure and function of a new member of the ferritin superfamily that is sequestered within an encapsulin capsid. We show that this encapsulated ferritin (EncFtn) has two main alpha helices, which assemble in a metal dependent manner to form a ferroxidase center at a dimer interface. EncFtn adopts an open decameric structure that is topologically distinct from other ferritins. While EncFtn acts as a ferroxidase, it cannot mineralize iron. Conversely, the encapsulin shell associates with iron, but is not enzymatically active, and we demonstrate that EncFtn must be housed within the encapsulin for iron storage. This encapsulin nanocompartment is widely distributed in bacteria and archaea and represents a distinct class of iron storage system, where the oxidation and mineralization of iron are distributed between two proteins. DOI: http://dx.doi.org/10.7554/eLife.18972.001 PMID:27529188

  7. Change of iron species and iron solubility in Asian dust during the long-range transport from western China to Japan

    Directory of Open Access Journals (Sweden)

    Y. Takahashi

    2011-11-01

    Full Text Available In the North Pacific, transport and deposition of mineral dust from Asia appear to be one of major sources of iron which can regulate growth of phytoplankton in the ocean. In this process, it is essential to identify chemical species of iron contained in Asian dust, because bioavailability of iron in the ocean is strongly influenced by the solubility of iron, which in turn is dependent on iron species in the dust. Here, we report that clay minerals (illite and chlorite in the dusts near the source collected at Aksu (western China can be transformed into ferrihydrite by atmospheric chemical processes during their long-range transport to eastern China (Qingdao and Japan (Tsukuba based on the speciation by X-ray absorption fine structure (XAFS and other methods such as X-ray diffraction and chemical extraction. As a result, Fe molar ratio in Aksu (illite : chlorite : ferrihydrite = 70 : 25 : 5 was changed to that in Tsukuba (illite : chlorite : ferrihydrite = 65 : 10 : 25. Moreover, leaching experiments were conducted to study the change of iron solubility. It was found that the iron solubility for the dust in Tsukuba (soluble iron fraction: 11.8 % and 1.10 % for synthetic rain water and seawater, respectively was larger than that in Aksu (4.1 % and 0.28 %, respectively, showing that iron in the dust after the transport becomes more soluble possibly due to the formation of ferrihydrite in the atmosphere. Our findings suggested that secondary formation of ferrihydrite during the transport should be considered as one of important processes in evaluating the supply of soluble iron to seawater.

  8. Influence of hydrogen chemisorption kinetics on the interpretation of hydrogen transport through iron membranes

    Science.gov (United States)

    Shanabarger, M. R.; Taslami, A.; Nelson, H. G.

    1981-01-01

    The influence of a specific surface reaction on the transport of gas-phase hydrogen through iron membranes has been investigated on the basis of model calculations. The surface reaction involves an adsorbed molecular hydrogen precursor between the gas phase and the dissociated chemisorbed state. The calculations demonstrate that the surface reaction for the H2/Fe system makes significant contributions to the time delay associated with the transient hydrogen transport through iron membranes, even under conditions where the steady-state hydrogen transport is independent of the surface reaction. These contributions to the time delay are interpreted in terms of an effective diffusivity, which is a function of the pressure on the entrance side and the thickness of the membrane.

  9. Ndfip2 is a potential regulator of the iron transporter DMT1 in the liver

    OpenAIRE

    Foot, Natalie J.; Kelly M. Gembus; Kimberly Mackenzie; Sharad Kumar

    2016-01-01

    The regulation of divalent metal ion transporter DMT1, the primary non-heme iron importer in mammals, is critical for maintaining iron homeostasis. Previously we identified ubiquitin-dependent regulation of DMT1 involving the Nedd4 family of ubiquitin ligases and the Ndfip1 and Ndfip2 adaptors. We also established the in vivo function of Ndfip1 in the regulation of DMT1 in the duodenum of mice. Here we have studied the function of Ndfip2 using Ndfip2-deficient mice. The DMT1 protein levels in...

  10. The transport mechanism of bacterial Cu+-ATPases: distinct efflux rates adapted to different function

    OpenAIRE

    Raimunda, Daniel; González-Guerrero, Manuel; Leeber, Blaise W.; Argüello, José M.

    2011-01-01

    Cu+-ATPases play a key role in bacterial Cu+ homeostasis by participating in Cu+ detoxification and cuproprotein assembly. Characterization of Archaeoglobus fulgidus CopA, a model protein within the subfamily of P1B-1 type ATPases, has provided structural and mechanistic details on this group of transporters. Atomic resolution structures of cytoplasmic regulatory metal binding domains (MBDs) and catalytic actuator, phosphorylation, and nucleotide binding domains are available. These, in combi...

  11. DNA Protection by the Bacterial Ferritin Dps via DNA Charge Transport

    OpenAIRE

    Arnold, Anna R.; Barton, Jacqueline K.

    2013-01-01

    Dps proteins, bacterial mini-ferritins that protect DNA from oxidative stress, are implicated in the survival and virulence of pathogenic bacteria. Here we examine the mechanism of E. coli Dps protection of DNA, specifically whether this DNA-binding protein can utilize DNA charge transport through the base pair π-stack to protect the genome from a distance. An intercalating ruthenium photooxidant was employed to generate DNA damage localized to guanine repeats, the sites of lowest potential i...

  12. Nanoscale zerovalent iron alters soil bacterial community structure and inhibits chloroaromatic biodegradation potential in Aroclor 1242-contaminated soil

    International Nuclear Information System (INIS)

    Nanoscale zerovalent iron (nZVI) has potential for the remediation of organochlorine-contaminated environments. Environmental safety concerns associated with in situ deployment of nZVI include potential negative impacts on indigenous microbes whose biodegradative functions could contribute to contaminant remediation. With respect to a two-step polychlorinated biphenyl remediation scenario comprising nZVI dechlorination followed by aerobic biodegradation, we examined the effect of polyacrylic acid (PAA)-coated nZVI (mean diameter = 12.5 nm) applied at 10 g nZVI kg−1 to Aroclor-1242 contaminated and uncontaminated soil over 28 days. nZVI had a limited effect on Aroclor congener profiles, but, either directly or indirectly via changes to soil physico-chemical conditions (pH, Eh), nZVI addition caused perturbation to soil bacterial community composition, and reduced the activity of chloroaromatic mineralizing microorganisms. We conclude that nZVI addition has the potential to inhibit microbial functions that could be important for PCB remediation strategies combining nZVI treatment and biodegradation. Highlights: ► Impact of nano-sized zerovalent iron on microbes was investigated in soil microcosms. ► Zerovalent iron had short-lived effects on redox potential and Aroclor dechlorination. ► Microbial populations also showed short-lived perturbations in their size. ► The activity of chloroaromatic degrading microbes did not recover within 28 days. ► Zerovalent iron application inhibits ensuing PCB bioremediative microbial functions. - nZVI inhibits microbial functions of potential importance for remediation strategies combining nZVI treatment and biodegradation.

  13. Siderophore-mediated iron acquisition influences motility and is required for full virulence of the xylem-dwelling bacterial phytopathogen Pantoea stewartii subsp. stewartii.

    Science.gov (United States)

    Burbank, Lindsey; Mohammadi, Mojtaba; Roper, M Caroline

    2015-01-01

    Iron is a key micronutrient for microbial growth but is often present in low concentrations or in biologically unavailable forms. Many microorganisms overcome this challenge by producing siderophores, which are ferric-iron chelating compounds that enable the solubilization and acquisition of iron in a bioactive form. Pantoea stewartii subsp. stewartii, the causal agent of Stewart's wilt of sweet corn, produces a siderophore under iron-limiting conditions. The proteins involved in the biosynthesis and export of this siderophore are encoded by the iucABCD-iutA operon, which is homologous to the aerobactin biosynthetic gene cluster found in a number of enteric pathogens. Mutations in iucA and iutA resulted in a decrease in surface-based motility that P. stewartii utilizes during the early stages of biofilm formation, indicating that active iron acquisition impacts surface motility for P. stewartii. Furthermore, bacterial movement in planta is also dependent on a functional siderophore biosynthesis and uptake pathway. Most notably, siderophore-mediated iron acquisition is required for full virulence in the sweet corn host, indicating that active iron acquisition is essential for pathogenic fitness for this important xylem-dwelling bacterial pathogen. PMID:25326304

  14. Integrity of the iron transport process in mice with X-linked anaemia

    International Nuclear Information System (INIS)

    The defect in iron (Fe) absorption in X-linked anaemia (sla) remains an enigma; absorption of a tracer dose of Fe is impaired in mice raised on an iron-containing cube diet but not in those raised on an iron-deficient diet. Because cobalt (Co) shares a similar intestinal transport pathway with Fe, a study was made of the effect of iron deficient diet on Co absorption. The duodenum of sla and genetically normal mice was perfused for 30 min with labelled solutions containing Co or Fe. Co uptake and transfer were similar in sla and normals fed cubes whereas Fe uptake and transfer were less in sla than in normals. The iron deficient diet caused an increase in the uptake and transfer of Co and Fe in sla and normals. When Co and Fe were perfused together in sla fed deficient diet, the uptake and transfer of each metal was less than when perfused alone. The distribution of Fe and Co in subcellular mucosal fractions was determined by a differential centrifugation technique. Deficient diet resulted in a directionally similar change in the subcellular distribution of Co and Fe in sla and normals. The increase in Co as well as Fe absorption in the sla on an iron deficient diet to the same high level found in genetically normal animals, and the inhibitory effect of each metal on the absorption of the other suggests that the absorption defect in sla is unlikely to be due to a primary defect in the function of the transport carrier. (author)

  15. Identification and characterization of an iron ABC transporter operon in Gluconacetobacter diazotrophicus Pal 5.

    Science.gov (United States)

    Urzúa, Lucia Soto; Vázquez-Candanedo, Ada P; Sánchez-Espíndola, Adriana; Ramírez, Carlos Ávila; Baca, Beatriz E

    2013-06-01

    Gluconacetobacter diazotrophicus is a nitrogen-fixing bacterium and endophyte of sugarcane. We have cloned and sequenced the genes coding for the components of the iron ABC-type acquisition system of G. diazotrophicus. Sequence analysis revealed three ORFs, (feuA, feuB, and feuC) organized as an operon and encoding polypeptides of 346 (38 kDa), 342 (34.2 kDa), and 240 (26 kDa) amino acids, respectively. The deduced translation products of the feu operon showed similarity with a periplasmic solute-binding protein (FeuA), permease (FeuB), and ATPase (FeuC) involved in Fe transport. The role of FeuB in the survival of G. diazotrophicus under iron depletion was evaluated by comparing the ability of wild-type and FeuB-Km(R) -mutant strains in a medium without iron supplementation and in a medium containing 2, 2'-dipyridyl (DP). Growth of the mutant was affected in the medium containing DP. The operon was expressed at higher levels in cells depleted for iron than in those that contained the metal. A decrease in nitrogenase activity was observed with the FeuB-Km(R) -mutant strain that with the wild-type under iron deficiency conditions, suggesting that the Feu operon play role in Fe nutrition of G. diazotrophicus. PMID:23624722

  16. Genetics and Virulence Association of the Shigella flexneri Sit Iron Transport System ▿

    OpenAIRE

    Fisher, Carolyn R.; Davies, Nicola M. L. L.; Wyckoff, Elizabeth E.; Feng, Zhengyu; Oaks, Edwin V.; Payne, Shelley M.

    2009-01-01

    The sit-encoded iron transport system is present within pathogenicity islands in all Shigella spp. and some pathogenic Escherichia coli strains. The islands contain numerous insertion elements and sequences with homology to bacteriophage genes. The Shigella flexneri sit genes can be lost as a result of deletion within the island. The formation of deletions was dependent upon RecA and occurred at relatively high frequency. This suggests that the sit region is inherently unstable, yet sit genes...

  17. DIVALENT METAL TRANSPORTER-1 REGULATION BY IRON AND VANADIUM MODULATES HYDROGEN PEROXIDE-INDUCED DNA DAMAGE IN LUNG CELLS

    Science.gov (United States)

    The divalent metal transporter-1 (DMT1) participates in the detoxification of metals that can damage lung epithelium. Elevated iron levels increase the expression of DMT1 in bronchial epithelial cells stimulating its uptake and storage in ferritin, thus making iron unavailable t...

  18. Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport

    OpenAIRE

    Yasuhiro Ishimaru; Ryuichi Takahashi; Khurram Bashir; Hugo Shimo; Takeshi Senoura; Kazuhiko Sugimoto; Kazuko Ono; Masahiro Yano; Satoru Ishikawa; Tomohito Arao; Hiromi Nakanishi; Naoko K. Nishizawa

    2012-01-01

    Metals like manganese (Mn) and iron (Fe) are essential for metabolism, while cadmium (Cd) is toxic for virtually all living organisms. Understanding the transport of these metals is important for breeding better crops. We have identified that OsNRAMP5 contributes to Mn, Fe and Cd transport in rice. OsNRAMP5 expression was restricted to roots epidermis, exodermis, and outer layers of the cortex as well as in tissues around the xylem. OsNRAMP5 localized to the plasma membrane, and complemented ...

  19. Interspecies modulation of bacterial development through iron competition and siderophore piracy.

    Science.gov (United States)

    Traxler, Matthew F; Seyedsayamdost, Mohammad R; Clardy, Jon; Kolter, Roberto

    2012-11-01

    While soil-dwelling actinomycetes are renowned for secreting natural products, little is known about the roles of these molecules in mediating actinomycete interactions. In a previous co-culture screen, we found that one actinomycete, Amycolatopsis sp. AA4, inhibited aerial hyphae formation in adjacent colonies of Streptomyces coelicolor. A siderophore, amychelin, mediated this developmental arrest. Here we present genetic evidence that confirms the role of the amc locus in the production of amychelin and in the inhibition of S. coelicolor development. We further characterize the Amycolatopsis sp. AA4 - S. coelicolor interaction by examining expression of developmental and iron acquisition genes over time in co-culture. Manipulation of iron availability and/or growth near Amycolatopsis sp. AA4 led to alterations in expression of the critical developmental gene bldN, and other key downstream genes in the S. coelicolor transcriptional cascade. In Amycolatopsis sp. AA4, siderophore genes were downregulated when grown near S. coelicolor, leading us to find that deferrioxamine E, produced by S. coelicolor, could be readily utilized by Amycolatopsis sp. AA4. Collectively these results suggest that competition for iron via siderophore piracy and species-specific siderophores can alter patterns of gene expression and morphological differentiation during actinomycete interactions. PMID:22931126

  20. Bacterial communities potentially involved in iron-cycling in Baltic Sea and North Sea sediments revealed by pyrosequencing.

    Science.gov (United States)

    Reyes, Carolina; Dellwig, Olaf; Dähnke, Kirstin; Gehre, Matthias; Noriega-Ortega, Beatriz E; Böttcher, Michael E; Meister, Patrick; Friedrich, Michael W

    2016-04-01

    To gain insight into the bacterial communities involved in iron-(Fe) cycling under marine conditions, we analysed sediments with Fe-contents (0.5-1.5 wt %) from the suboxic zone at a marine site in the Skagerrak (SK) and a brackish site in the Bothnian Bay (BB) using 16S rRNA gene pyrosequencing. Several bacterial families, including Desulfobulbaceae, Desulfuromonadaceae and Pelobacteraceae and genera, includingDesulfobacterandGeobacter, known to reduce Fe were detected and showed highest abundance near the Fe(III)/Fe(II) redox boundary. Additional genera with microorganisms capable of coupling fermentation to Fe-reduction, includingClostridiumandBacillus, were observed. Also, the Fe-oxidizing families Mariprofundaceae and Gallionellaceae occurred at the SK and BB sites, respectively, supporting Fe-cycling. In contrast, the sulphate (SO4 (2-)) reducing bacteriaDesulfococcusandDesulfobacteriumwere more abundant at greater depths concurring with a decrease in Fe-reducing activity. The communities revealed by pyrosequencing, thus, match the redox stratification indicated by the geochemistry, with the known Fe-reducers coinciding with the zone of Fe-reduction. Not the intensely studied model organisms, such asGeobacterspp., but rather versatile microorganisms, including sulphate reducers and possibly unknown groups appear to be important for Fe-reduction in these marine suboxic sediments. PMID:26960392

  1. Iron Homeostasis and Nutritional Iron Deficiency123

    OpenAIRE

    Theil, Elizabeth C.

    2011-01-01

    Nonheme food ferritin (FTN) iron minerals, nonheme iron complexes, and heme iron contribute to the balance between food iron absorption and body iron homeostasis. Iron absorption depends on membrane transporter proteins DMT1, PCP/HCP1, ferroportin (FPN), TRF2, and matriptase 2. Mutations in DMT1 and matriptase-2 cause iron deficiency; mutations in FPN, HFE, and TRF2 cause iron excess. Intracellular iron homeostasis depends on coordinated regulation of iron trafficking and storage proteins enc...

  2. Effects of altered groundwater chemistry upon the pH-dependency and magnitude of bacterial attachment during transport within an organically contaminated sandy aquifer

    Science.gov (United States)

    Harvey, R.W.; Metge, D.W.; Barber, L.B.; Aiken, G.R.

    2010-01-01

    The effects of a dilute (ionic strength = 5 ?? 10-3 M) plume of treated sewage, with elevated levels (3.9 mg/L) of dissolved organic carbon (DOC), upon the pH-dependency and magnitude of bacterial transport through an iron-laden, quartz sand aquifer (Cape Cod, MA) were evaluated using sets of replicate, static minicolumns. Compared with uncontaminated groundwater, the plume chemistry diminished bacterial attachment under mildly acidic (pH 5.0-6.5) in-situ conditions, in spite of the 5-fold increase in ionic strength and substantively enhanced attachment under more alkaline conditions. The effects of the hydrophobic neutral and total fractions of the plume DOC; modest concentrations of fulvic and humic acids (1.5 mg/L); linear alkyl benzene sulfonate (LAS) (25 mg/L); Imbentin (200 ??g/L), a model nonionic surfactant; sulfate (28 mg/L); and calcium (20 mg/L) varied sharply in response to relatively small changes in pH, although the plume constituents collectively decreased the pH-dependency of bacterial attachment. LAS and other hydrophobic neutrals (collectively representing only ???3% of the plume DOC) had a disproportionately large effect upon bacterial attachment, as did the elevated concentrations of sulfate within the plume. The findings further suggest that the roles of organic plume constituents in transport or bacteria through acidic aquifer sediments can be very different than would be predicted from column studies performed at circumneutral pH and that the inorganic constituents within the plume cannot be ignored.

  3. Novel two-component transmembrane transcription control: regulation of iron dicitrate transport in Escherichia coli K-12.

    OpenAIRE

    Van Hove, B; Staudenmaier, H; Braun, V

    1990-01-01

    Citrate and iron have to enter only the periplasmic space in order to induce the citrate-dependent iron(III) transport system of Escherichia coli. The five transport genes fecABCDE form an operon and are transcribed from fecA to fecE. Two genes, termed fecI and fecR, that mediate induction by iron(III) dicitrate have been identified upstream of fecA. The fecI gene encodes a protein of 173 amino acids (molecular weight, 19,478); the fecR gene encodes a protein of 317 amino acids (molecular wei...

  4. A field investigation of arsenic transport by colloidal iron oxides in the hyporheic zone

    Science.gov (United States)

    O'Carroll, D. M.; Hartland, A.; Larsen, J.; Andersen, M. S.

    2012-12-01

    Conceptual models concerning the fate of arsenic, and many other heavy metals, in aqueous environments including groundwater do not traditionally include colloids as potential facilitators of transport. However, there is significant evidence that heavy metals and oxyanions, including arsenic, preferentially partition into oxide phases. Iron oxides are commonly present as colloids (e.g. Ferrihydrite) and have the potential to mobilise and transport arsenic further than typically assumed. Interactions between Fe-oxides and natural organic matter (NOM) may be particularly significant in hyporheic sediments, given the comparatively high concentrations of dissolved organic carbon present and the presence of pronounced and dynamic redox fronts. Colloidal Fe-oxide stability may be enhanced by NOM surface coatings, potentially limiting colloid sedimentation and making encapsulated colloids more mobile. Furthermore, NOM is a significant agent driving As release, through the consumption of dissolved oxygen by microorganisms (leading to reductive dissolution of Fe-oxides in sediments. In this study the size-distribution and speciation of colloidal phases were studied beneath an ephemeral stream. We determined the proportions of Fe and As in colloidal fractions and determined the proportions held in complexes with NOM. Redox conditions went from aerobic, immediately beneath the stream, to anoxic and finally aerobic away from the stream and into the aquifer. This presentation will discuss dominant arsenic transport pathways including the possible importance of iron and natural organic colloids on arsenic transport.

  5. Enhancement of Bacterial Transport in Aerobic and Anaerobic Environments: Assessing the Effect of Metal Oxide Chemical Heterogeneities

    International Nuclear Information System (INIS)

    The goal of our research was to understand the fundamental processes that control microbial transport in physically and chemically heterogeneous aquifers and from this enhanced understanding determine the requirements for successful, field-scale delivery of microorganisms to metal contaminated subsurface sites. Our specific research goals were to determine; (1) the circumstances under which the preferential adsorption of bacteria to Fe, Mn, and Al oxyhydroxides influences field-scale bacterial transport, (2) the extent to which the adhesion properties of bacterial cells affect field-scale bacterial transport, (3) whether microbial Fe(III) reduction can enhance field-scale transport of Fe reducing bacteria (IRB) and other microorganisms and (4) the effect of field-scale physical and chemical heterogeneity on all three processes. Some of the spin-offs from this basic research that can improve biostimulation and bioaugmentation remediation efforts at contaminated DOE sites have included; (1) new bacterial tracking tools for viable bacteria; (2) an integrated protocol which combines subsurface characterization, laboratory-scale experimentation, and scale-up techniques to accurately predict field-scale bacterial transport; and (3) innovative and inexpensive field equipment and methods that can be employed to enhance Fe(III) reduction and microbial transport and to target microbial deposition under both aerobic and anaerobic conditions

  6. Characterization of corrosive bacterial consortia isolated from petroleum-product-transporting pipelines

    Energy Technology Data Exchange (ETDEWEB)

    Rajasekar, Aruliah; Ting, Yen-Peng [National Univ. of Singapore (Singapore). Dept. of Chemical and Biomolecular Engineering; Anandkumar, Balakrishnan [Sourashtra Coll., Madurai (India). Dept. of Biotechnology; Maruthamuthu, Sundaram [Central Electrochemical Research Inst., Karaikudi (India). Biocorrosion Group; Rahman, Pattanathu K.S.M. [Teesside Univ., Tees Valley (United Kingdom). Chemical and Bioprocess Engineering Group

    2010-01-15

    Microbiologically influenced corrosion is a problem commonly encountered in facilities in the oil and gas industries. The present study describes bacterial enumeration and identification in diesel and naphtha pipelines located in the northwest and southwest region in India, using traditional cultivation technique and 16S rDNA gene sequencing. Phylogenetic analysis of 16S rRNA sequences of the isolates was carried out, and the samples obtained from the diesel and naphtha-transporting pipelines showed the occurrence of 11 bacterial species namely Serratia marcescens ACE2, Bacillus subtilis AR12, Bacillus cereus ACE4, Pseudomonas aeruginosa AI1, Klebsiella oxytoca ACP, Pseudomonas stutzeri AP2, Bacillus litoralis AN1, Bacillus sp., Bacillus pumilus AR2, Bacillus carboniphilus AR3, and Bacillus megaterium AR4. Sulfate-reducing bacteria were not detected in samples from both pipelines. The dominant bacterial species identified in the petroleum pipeline samples were B. cereus and S. marcescens in the diesel and naphtha pipelines, respectively. Therefore, several types of bacteria may be involved in biocorrosion arising from natural biofilms that develop in industrial facilities. In addition, localized (pitting) corrosion of the pipeline steel in the presence of the consortia was observed by scanning electron microscopy analysis. The potential role of each species in biofilm formation and steel corrosion is discussed. (orig.)

  7. Binding of f-elements to the iron-transport protein transferrin

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, D.M.; Yule, L.; Gaskin, P.W.; Unalkat, P. (Kernforschungszentrum Karlsruhe, GmbH (DE). Inst. fuer Genetik und Toxikologie von Sfaltstoffen); Taylor, D.M. (Heidelberg Univ. (DE)); Duffield, J.R.; Williams, D.R.; Yule, L.; Gaskin, P.W.; Unalkat, P. (University Coll. of Cardiff (UK)); Duffield, J.R. (Manchester Polytechnic, (UK). Dept. of Chemistry)

    1991-01-01

    Chromatographic studies of in vivo and in vitro labelled blood serum indicate that the f-elements Th(IV), Pu(IV), Np(IV, V), Am(III), Cm(III), Eu(III), Gd(III) and Yb(III) bind to and are transported on transferrin (Tf). Spectroscopic studies indicate that 2 f-metal atoms are bound to each Tf molecule, thus implicating the N- and C-terminal iron binding sites of transferrin in f-element binding. However, the stability of the f-metal-Tf complexes, especially those with M(III), is lower than that of the Fe(III) complex. In some cells Fe(III) binding to transferrin facilitates cellular iron uptake via a receptor mechanism, but with Pu(IV) transferrin binding appears to inhibit cellular uptake.

  8. Bacterial and archaeal diversity in an iron-rich coastal hydrothermal field in Yamagawa, Kagoshima, Japan

    DEFF Research Database (Denmark)

    Kawaichi, Satoshi; Ito, Norihiro; Yoshida, Takashi;

    2013-01-01

    . The environmental settings of the coastal hydrothermal field were similar in some degree to those of deep-sea hydrothermal environments because of its emission of H2, CO2, and sulfide from the bottom of the hot spot. The results of clone analyses based on the 16S rRNA gene led us to speculate the...... presence of a chemo-synthetic microbial ecosystem, where chemolithoautotrophic thermophiles, primarily the bacterial order Aquificales, function as primary producers using H2 or sulfur compounds as their energy source and CO2 as their carbon source, and the organic compounds synthesized by them support the...... can also function as primary producing or nitrogen-fixing bacteria....

  9. Influence of electrolyte and voltage on the direct current enhanced transport of iron nanoparticles in clay.

    Science.gov (United States)

    Gomes, Helena I; Dias-Ferreira, Celia; Ribeiro, Alexandra B; Pamukcu, Sibel

    2014-03-01

    Zero valent iron nanoparticles (nZVI) transport for soil and groundwater remediation is slowed down or halted by aggregation or fast depletion in the soil pores. Direct electric current can enhance the transport of nZVI in low permeability soils. However operational factors, including pH, oxidation-reduction potential (ORP), voltage and ionic strength of the electrolyte can play an important role in the treatment effectiveness. Experiments were conducted to enhance polymer coated nZVI mobility in a model low permeability soil medium (kaolin clay) using low direct current. Different electrolytes of varying ionic strengths and initial pH and high nZVI concentrations were applied. Results showed that the nZVI transport is enhanced by direct current, even considering concentrations typical of field application that favor nanoparticle aggregation. However, the factors considered (pH, ORP, voltage and electrolyte) failed to explain the iron concentration variation. The electrolyte and its ionic strength proved to be significant for pH and ORP measured during the experiments, and therefore will affect aggregation and fast oxidation of the particles. PMID:24252496

  10. The transport mechanism of bacterial Cu+-ATPases: distinct efflux rates adapted to different function.

    Science.gov (United States)

    Raimunda, Daniel; González-Guerrero, Manuel; Leeber, Blaise W; Argüello, José M

    2011-06-01

    Cu(+)-ATPases play a key role in bacterial Cu(+) homeostasis by participating in Cu(+) detoxification and cuproprotein assembly. Characterization of Archaeoglobus fulgidus CopA, a model protein within the subfamily of P(1B-1) type ATPases, has provided structural and mechanistic details on this group of transporters. Atomic resolution structures of cytoplasmic regulatory metal binding domains (MBDs) and catalytic actuator, phosphorylation, and nucleotide binding domains are available. These, in combination with whole protein structures resulting from cryo-electron microscopy analyses, have enabled the initial modeling of these transporters. Invariant residues in helixes 6, 7 and 8 form two transmembrane metal binding sites (TM-MBSs). These bind Cu(+) with high affinity in a trigonal planar geometry. The cytoplasmic Cu(+) chaperone CopZ transfers the metal directly to the TM-MBSs; however, loading both of the TM-MBSs requires binding of nucleotides to the enzyme. In agreement with the classical transport mechanism of P-type ATPases, occupancy of both transmembrane sites by cytoplasmic Cu(+) is a requirement for enzyme phosphorylation and subsequent transport into the periplasmic or extracellular milieus. Recent transport studies have shown that all Cu(+)-ATPases drive cytoplasmic Cu(+) efflux, albeit with quite different transport rates in tune with their various physiological roles. Archetypical Cu(+)-efflux pumps responsible for Cu(+) tolerance, like the Escherichia coli CopA, have turnover rates ten times higher than those involved in cuproprotein assembly (or alternative functions). This explains the incapability of the latter group to significantly contribute to the metal efflux required for survival in high copper environments. PMID:21210186

  11. The Bacillus subtilis EfeUOB transporter is essential for high-affinity acquisition of ferrous and ferric iron.

    Science.gov (United States)

    Miethke, Marcus; Monteferrante, Carmine G; Marahiel, Mohamed A; van Dijl, Jan Maarten

    2013-10-01

    Efficient uptake of iron is of critical importance for growth and viability of microbial cells. Nevertheless, several mechanisms for iron uptake are not yet clearly defined. Here we report that the widely conserved transporter EfeUOB employs an unprecedented dual-mode mechanism for acquisition of ferrous (Fe[II]) and ferric (Fe[III]) iron in the bacterium Bacillus subtilis. We show that the binding protein EfeO and the permease EfeU form a minimal complex for ferric iron uptake. The third component EfeB is a hemoprotein that oxidizes ferrous iron to ferric iron for uptake by EfeUO. Accordingly, EfeB promotes growth under microaerobic conditions where ferrous iron is more abundant. Notably, EfeB also fulfills a vital role in cell envelope stress protection by eliminating reactive oxygen species that accumulate in the presence of ferrous iron. In conclusion, the EfeUOB system contributes to the high-affinity uptake of iron that is available in two different oxidation states. PMID:23764491

  12. Transport of nano zero-valent iron supported by mesoporous silica microspheres in porous media.

    Science.gov (United States)

    Yang, Zhangmei; Qiu, Xinhong; Fang, Zhanqiang; Pokeung, Tsang

    2015-01-01

    Effective in situ remediation of groundwater requires the successful delivery of reactive iron particles through sand. However, the agglomeration of nano zero-valent iron (NZVI) particles limits the migration distance, which inhibits their usefulness. In the study described herein, NZVI supported by mesoporous silica microspheres covered with FeOOH (SiO2@FeOOH@Fe) was synthesized, and its mobility was demonstrated on the basis of transport in porous media. Degradation of decabromodiphenyl ether (BDE209) was more efficient by SiO2@FeOOH@Fe than by 'bare' NZVI. Breakthrough curves and mass recovery showed the mobility of SiO2@FeOOH@Fe in granular media was better than that of bare NZVI. It increased greatly in the presence of natural organic matter (NOM) and decreased when high Ca2+ and Mg2+ concentrations were encountered. Analysis of the transport data on the basis of filtration theory showed diffusion to be the main mechanism for particle removal in silicon sand. Increasing the NOM may decrease agglomeration of the grains of sand, which has a positive effect on the mobility of SiO2@FeOOH@Fe. Presumably, increasing the concentrations of Ca2+ and Mg2+ compresses the diffuse double layer of SiO2@FeOOH@Fe, resulting in a reduction of mobility. PMID:26067499

  13. Monitoring Bacterial Water Quality for Application to Watershed and Nearshore Fate and Transport Model Development

    Science.gov (United States)

    Fry, L. M.; Ritzenthaler, A.; Kramer, E.; Anderson, E. J.

    2014-12-01

    There is increasing interest in linking watershed processes with nearshore processes in order to predict the fate and transport of pollutants, including bacteria, for application to management of recreational waters. However, traditional nearshore bacterial water quality monitoring programs are not sufficiently informative for understanding the spatio-temporal variability of water quality at scales that are relevant to process modeling. During the summer and fall of 2012, 2013, and 2014, we conducted increasingly intensive monitoring specifically designed to aid in the development of a linked watershed-hydrodynamics modeling framework for simulating the impacts of Michigan's Clinton River on the nearshore bacterial water quality of Lake St. Clair. Monitoring incorporated multiple sampling "events," including routine weekly sampling at 19 points along 19 km of shoreline, periodic transects perpendicular to the shoreline, periodic offshore sampling corresponding to the shoreline sampling points, repeated shoreline sampling over several 3-day periods, weekly river grab samples, hourly sampling of the river at baseline conditions, and hourly sampling of the river during high flow events. These sampling events allow exploration of the spatiotemporal variability of nearshore water quality resulting from local physiographic factors as well as the temporal variability of water quality in the river outlets. We present results describing the spatiotemporal variability as it relates to the watershed and hydrodynamics processes represented in a linked modeling framework which is under development.

  14. Influence of food tannins on certain aspects of iron metabolism : Part 2 -- Storage and transport in normal and anemic rats

    International Nuclear Information System (INIS)

    Administration of tannin (0.5 mg/kg body wt/day) from fruits and vegetables lowers the iron content in liver, spleen and bone marrow with an elevation in Total Iron Binding Capacity (TIBC) of serum and serum iron concentration in normal rats. The same dose of tannin increases the iron content in storage tissues, particularly bone marrow of hemolytic anemic rats. In anemic rats, TIBC is decreased and serum iron concentration is raised from anemic level to approximately normal value due to ingestion of tannin. Radioiron administration, either by oral or by intravenous route, also elicits similar results. Recovery of iron storage and transport values from the anemic to the normal condition by tannin (0.5 mg/kg) varies with the source of tannin used. Thus more iron required for compensating the anemic conditions is retained within their body by tannin (0.5 mg/kg) which appears to reduce the loss of peripheral iron probably by protecting the lysis of red cells. (auth.)

  15. Enhanced transport of Si-coated nanoscale zero-valent iron particles in porous media.

    Science.gov (United States)

    HonetschlÄgerová, Lenka; Janouškovcová, Petra; Kubal, Martin

    2016-01-01

    Laboratory column experiments were conducted to evaluate the effect of previously described silica coating method on the transport of nanoscale zero-valent iron (nZVI) in porous media. The silica coating method showed the potential to prevent the agglomeration of nZVI. Transport experiments were conducted using laboratory-scale sand-packed columns at conditions that were very similar of natural groundwater. Transport properties of non-coated and silica-coated nZVI are investigated in columns of 40 cm length, which were filled with porous media. A suspension was injected in three different Fe particle concentrations (100, 500, and 1000 mg/L) at flow 5  mL/min. Experimental results were compared using nanoparticle attachment efficiency and travel distances which were calculated by classical particle filtration theory. It was found that non-coated particles were essentially immobile in porous media. In contrast, silica-coated particles showed significant transport distances at the tested conditions. Results of this study suggest that silica can increase nZVI mobility in the subsurface. PMID:26582314

  16. Modelling of neutron and photon transport in iron and concrete radiation shieldings by the Monte Carlo method - Version 2

    CERN Document Server

    Žukauskaite, A; Plukiene, R; Plukis, A

    2007-01-01

    Particle accelerators and other high energy facilities produce penetrating ionizing radiation (neutrons and γ-rays) that must be shielded. The objective of this work was to model photon and neutron transport in various materials, usually used as shielding, such as concrete, iron or graphite. Monte Carlo method allows obtaining answers by simulating individual particles and recording some aspects of their average behavior. In this work several nuclear experiments were modeled: AVF 65 – γ-ray beams (1-10 MeV), HIMAC and ISIS-800 – high energy neutrons (20-800 MeV) transport in iron and concrete. The results were then compared with experimental data.

  17. Molecular dynamics simulations of the bacterial ABC transporter SAV1866 in the closed form.

    Science.gov (United States)

    St-Pierre, Jean-François; Bunker, Alex; Róg, Tomasz; Karttunen, Mikko; Mousseau, Normand

    2012-03-01

    The ATP binding cassette (ABC) transporter family of proteins contains members involved in ATP-mediated import or export of ligands at the cell membrane. For the case of exporters, the translocation mechanism involves a large-scale conformational change that involves a clothespin-like motion from an inward-facing open state, able to bind ligands and adenosine triphosphate (ATP), to an outward-facing closed state. Our work focuses on SAV1866, a bacterial member of the ABC transporter family for which the structure is known for the closed state. To evaluate the ability of this protein to undergo conformational changes at physiological temperature, we first performed conventional molecular dynamics (MD) on the cocrystallized adenosine diphosphate (ADP)-bound structure and on a nucleotide-free structure. With this assessment of SAV1866's stability, conformational changes were induced by steered molecular dynamics (SMD), in which the nucleotide binding domains (NBD) were pushed apart, simulating the ATP hydrolysis energy expenditure. We found that the transmembrane domain is not easily perturbed by large-scale motions of the NBDs. PMID:22339391

  18. Modeling watershed-scale solute transport using an integrated, process-based hydrologic model with applications to bacterial fate and transport

    Science.gov (United States)

    Niu, Jie; Phanikumar, Mantha S.

    2015-10-01

    Distributed hydrologic models that simulate fate and transport processes at sub-daily timescales are useful tools for estimating pollutant loads exported from watersheds to lakes and oceans downstream. There has been considerable interest in the application of integrated process-based hydrologic models in recent years. While the models have been applied to address questions of water quantity and to better understand linkages between hydrology and land surface processes, routine applications of these models to address water quality issues are currently limited. In this paper, we first describe a general process-based watershed-scale solute transport modeling framework, based on an operator splitting strategy and a Lagrangian particle transport method combined with dispersion and reactions. The transport and the hydrologic modules are tightly coupled and the interactions among different hydrologic components are explicitly modeled. We test transport modules using data from plot-scale experiments and available analytical solutions for different hydrologic domains. The numerical solutions are also compared with an analytical solution for groundwater transit times with interactions between surface and subsurface flows. Finally, we demonstrate the application of the model to simulate bacterial fate and transport in the Red Cedar River watershed in Michigan and test hypotheses about sources and transport pathways. The watershed bacterial fate and transport model is expected to be useful for making near real-time predictions at marine and freshwater beaches.

  19. Low temperature charge transport and microwave absorption of carbon coated iron nanoparticles–polymer composite films

    International Nuclear Information System (INIS)

    Highlights: ► Carbon coated Fe nanoparticle–PVC composite films were prepared by solution casting method. ► A low electrical percolation threshold of 2.2 was achieved. ► The low temperature electrical conductivity follows variable range hopping type conduction. ► An EMI shielding of 18 dB was achieved in 200 micron thick film. -- Abstract: In this paper, the low temperature electrical conductivity and microwave absorption properties of carbon coated iron nanoparticles–polyvinyl chloride composite films are investigated for different filler fractions. The filler particles are prepared by the pyrolysis of ferrocene at 980 °C and embedded in polyvinyl chloride matrix. The high resolution transmission electron micrographs of the filler material have shown a 5 nm thin layer graphitic carbon covering over iron particles. The room temperature electrical conductivity of the composite film changes by 10 orders of magnitude with the increase of filler concentration. A percolation threshold of 2.2 and an electromagnetic interference shielding efficiency (EMI SE) of ∼18.6 dB in 26.5–40 GHz range are observed for 50 wt% loading. The charge transport follows three dimensional variable range hopping conduction.

  20. Catchment and in-stream influences on iron-deposit chemistry, algal-bacterial biomass and invertebrate richness in upland streams, Northern Ireland.

    Science.gov (United States)

    Macintosh, Katrina Ann; Griffiths, David

    2013-04-01

    The density and composition of upland stream bed iron-deposits is affected by physical, chemical and biological processes. The basic chemical processes producing ochre deposits are well known. Mobilisation of iron and manganese is influenced by bedrock weathering, the presence of acidic and/or reducing conditions and the concentration of dissolved organic carbon. Ferromanganese-depositing bacteria are significant biogenic agents and can cause/enhance the deposition of metals in streams as (hydr)oxides. Metal concentrations from stream waters in two geological blocks in Northern Ireland were compared to determine the contributions of catchment characteristics and in-stream conditions. One block is composed of metamorphosed schist and unconsolidated glacial drift, with peat or peaty podzol (mainly humic) soils, while the other block consists of tertiary basalt with brown earth and gley soils. Water samples were collected from 52 stream sites and analysed for iron, manganese and aluminium as well as a range of other chemical determinands known to affect metal solubility. Stone deposit material was analysed for metal concentrations, organic matter content and epilithic algae, chlorophyll a concentration. Invertebrates were collected by area-standardised kick samples and animals identified to family and numbers counted. Higher conductivities and concentrations of bicarbonate, alkalinity, calcium and magnesium occurred on basalt than on schist. Despite higher iron and manganese oxide concentrations in basalt-derived non-humic soils, stream water concentrations were much lower and stone deposit concentrations only one third of those occurring on schist overlain by humic soils. Peat-generated acidity and the limited acid neutralising capacity of base-poor metamorphosed schist has resulted in elevated concentrations of metals and ochre deposit in surface waters. Algal biomass was determined by catchment level factors whereas in-stream conditions affected bacterial biomass

  1. porewater chemistry experiment at Mont Terri rock laboratory. Reactive transport modelling including bacterial activity

    International Nuclear Information System (INIS)

    Document available in extended abstract form only. An in-situ test in the Opalinus Clay formation, termed pore water Chemistry (PC) experiment, was run for a period of five years. It was based on the concept of diffusive equilibration whereby traced water with a composition close to that expected in the formation was continuously circulated and monitored in a packed off borehole. The main original focus was to obtain reliable data on the pH/pCO2 of the pore water, but because of unexpected microbially- induced redox reactions, the objective was then changed to elucidate the biogeochemical processes happening in the borehole and to understand their impact on pH/pCO2 and pH in the low permeability clay formation. The biologically perturbed chemical evolution of the PC experiment was simulated with reactive transport models. The aim of this modelling exercise was to develop a 'minimal-' model able to reproduce the chemical evolution of the PC experiment, i.e. the chemical evolution of solute inorganic and organic compounds (organic carbon, dissolved inorganic carbon etc...) that are coupled with each other through the simultaneous occurrence of biological transformation of solute or solid compounds, in-diffusion and out-diffusion of solute species and precipitation/dissolution of minerals (in the borehole and in the formation). An accurate description of the initial chemical conditions in the surrounding formation together with simplified kinetics rule mimicking the different phases of bacterial activities allowed reproducing the evolution of all main measured parameters (e.g. pH, TOC). Analyses from the overcoring and these simulations evidence the high buffer capacity of Opalinus clay regarding chemical perturbations due to bacterial activity. This pH buffering capacity is mainly attributed to the carbonate system as well as to the clay surfaces reactivity. Glycerol leaching from the pH-electrode might be the primary organic source responsible for

  2. Effects of Iron on Hydrogen-producing Capacity,Hydrogenase and NADH-fd Reductase Activities of a Fermentative Hydrogen-producing Bacterial Strain B49

    Institute of Scientific and Technical Information of China (English)

    Wang Xiangjing(王相晶); Ren Nanqi; Xiang Wensheng

    2004-01-01

    Iron plays an important role in hydrogen production, cell growth, hydrogenase and NADH-fd reductase activities of hydrogen-producing bacterial strain B49 (AF481148 in EMBL). At the end of fermentation from 10 g/L glucose, for the culture containing 10 mg/L FeSO4*7H2O the cell growth in terms of optical density (OD) at 600nm was 1.13, the ratio of ethanol amount (mg/L) to acetate amount (mg/L) was 1.55, and the accumulated hydrogen volume was 1816.3 ml H2/L culture; whereas for the culture of 80 mg/L FeSO4*7H2O OD600nm was increased to 1.34, the accumulated hydrogen volume was increased to 2360.5 ml H2/L culture, and the ratio of ethanol amount (mg/L) to acetate amount (mg/L) decreased to 1.31. Moreover, the iron addition to the medium at different fermentation time could affect hydrogen-producing ability. However, the later the addition time of FeSO4*7H2O was postponed, the less the effect on hydrogen evolution was. In the course of fermentation, the specific activities of hydrogenase and NADH-fd reductase of hydrogen-producing bacterial strain B49 decreased with the consumption of iron.

  3. Effect of Transport and Aging Processes on Metal Speciation in Iron Oxyhydroxide Aggregates, Tar Creek Superfund Site, Oklahoma

    Science.gov (United States)

    Estes, E. R.; Schaider, L. A.; Shine, J. P.; Brabander, D. J.

    2010-12-01

    Following the cessation of mining activity in the late 20th century, Tar Creek Superfund Site was left highly contaminated by Pb, Zn, and Cd. Tar Creek, which flows through the site and into the Neosho River, has been studied extensively because of its potential to transport metals from the mining site to downstream communities. Previous research identified aggregated iron oxyhydroxide material, which forms when mine seepage mixes with Tar Creek surface water, as a major transport vector of metals. Frequent flooding in Tar Creek deposits aggregates on downstream floodplains, where wetting and drying processes alter the speciation of iron and other metals. This study seeks to better quantify those changes and to determine how transport and aging affects the human and ecological health risk. Sequential extractions of aggregate samples collected from the creek demonstrate that Fe is present in both amorphous (10-35% of Fe extracted) and more crystalline (8-23% of Fe extracted) phases. Substantial portions of heavy metals sorb to amorphous iron oxyhydroxide phases (accounting for 10-30% of Pb and Zn extracted) but are not associated with more crystalline iron oxide phases (representing only 1% or less of the Pb and Zn extracted). Samples have a high organic matter content (18-25% mass loss on ignition), but only Fe was significantly extracted by the oxidizing step targeting organic matter (1-2% of Pb and Zn extracted, but 10-26% of Fe extracted). The majority of metals were extracted by the soluble or residual steps. If metals and organic matter inhibit transformation of amorphous iron oxyhydroxide material to nano and crystalline iron oxides, then a steady-state volume of amorphous iron oxyhydroxide material with a high total sorption capacity may exist within Tar Creek, enhancing the metal flux accommodated by this transport mechanism. Once transported downstream and deposited on floodplains, however, it is hypothesized that repeated changes in soil matrix

  4. Evaluation of the effect of divalent metal transporter 1 gene polymorphism on blood iron, lead and cadmium levels

    International Nuclear Information System (INIS)

    Divalent metal transporter 1 (DMT1), a member of the proton-coupled metal ion transporter family, mediates transport of ferrous iron from the lumen of the intestine into the enterocyte and export of iron from endocytic vesicles. It has an affinity not only for iron but also for other divalent cations including manganese, cobalt, nickel, cadmium, lead, copper, and zinc. DMT1 is encoded by the SLC11a2 gene that is located on chromosome 12q13 in humans and express four major mammalian isoforms (1A/+IRE, 1A/-IRE, 2/+IRE and 2/-IRE). Mutations or polymorphisms of DMT1 gene may have an impact on human health by disturbing metal trafficking. To study the possible association of DMT1 gene with the blood levels of some divalent cations such as iron, lead and cadmium, a single nucleotide polymorphism (SNP) (IVS4+44C/A) in DMT1 gene was investigated in 486 unrelated and healthy individuals in a Turkish population by method of polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP). The genotype frequencies were found as 49.8% homozygote typical (CC), 38.3% heterozygote (CA) and 11.9% homozygote atypical (AA). Metal levels were analyzed by dual atomic absorption spectrometer system and the average levels of iron, lead and cadmium in the blood samples were 446.01±81.87 ppm, 35.59±17.72 ppb and 1.25±0.87 ppb, respectively. Individuals with the CC genotype had higher blood iron, lead and cadmium levels than those with AA and CA genotypes. Highly statistically significant associations were detected between IVS4+44 C/A polymorphism in the DMT1 gene and iron and lead levels (p=0.001 and p=0.036, respectively), but no association was found with cadmium level (p=0.344). This study suggested that DMT1 IVS4+44 C/A polymorphism is associated with inter-individual variations in blood iron, lead and cadmium levels. - Highlights: • DMT1 IVS4+44 C/A polymorphism is associated with inter-individual variations in blood iron, cadmium and lead levels.

  5. Evaluation of the effect of divalent metal transporter 1 gene polymorphism on blood iron, lead and cadmium levels

    Energy Technology Data Exchange (ETDEWEB)

    Kayaaltı, Zeliha, E-mail: kayaalti@ankara.edu.tr; Akyüzlü, Dilek Kaya; Söylemezoğlu, Tülin

    2015-02-15

    Divalent metal transporter 1 (DMT1), a member of the proton-coupled metal ion transporter family, mediates transport of ferrous iron from the lumen of the intestine into the enterocyte and export of iron from endocytic vesicles. It has an affinity not only for iron but also for other divalent cations including manganese, cobalt, nickel, cadmium, lead, copper, and zinc. DMT1 is encoded by the SLC11a2 gene that is located on chromosome 12q13 in humans and express four major mammalian isoforms (1A/+IRE, 1A/-IRE, 2/+IRE and 2/-IRE). Mutations or polymorphisms of DMT1 gene may have an impact on human health by disturbing metal trafficking. To study the possible association of DMT1 gene with the blood levels of some divalent cations such as iron, lead and cadmium, a single nucleotide polymorphism (SNP) (IVS4+44C/A) in DMT1 gene was investigated in 486 unrelated and healthy individuals in a Turkish population by method of polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP). The genotype frequencies were found as 49.8% homozygote typical (CC), 38.3% heterozygote (CA) and 11.9% homozygote atypical (AA). Metal levels were analyzed by dual atomic absorption spectrometer system and the average levels of iron, lead and cadmium in the blood samples were 446.01±81.87 ppm, 35.59±17.72 ppb and 1.25±0.87 ppb, respectively. Individuals with the CC genotype had higher blood iron, lead and cadmium levels than those with AA and CA genotypes. Highly statistically significant associations were detected between IVS4+44 C/A polymorphism in the DMT1 gene and iron and lead levels (p=0.001 and p=0.036, respectively), but no association was found with cadmium level (p=0.344). This study suggested that DMT1 IVS4+44 C/A polymorphism is associated with inter-individual variations in blood iron, lead and cadmium levels. - Highlights: • DMT1 IVS4+44 C/A polymorphism is associated with inter-individual variations in blood iron, cadmium and lead levels.

  6. Reactive transport modelling of iron-bentonite interaction within the KBS-3H disposal concept

    International Nuclear Information System (INIS)

    been shown to lead to a drastic effect on Kunipia F bentonite in long contact with iron powder in batch experiments. It may be explained by rapid scavenging of Fe(II) by the clay and the concurrent slow precipitation of iron corrosion products, such as magnetite or green rust. This effect was systematically evaluated by considering precipitation of various potential corrosion products and neo-formed silicate minerals. The modelling was carried out in 3 steps: 1) Setup of modelling strategy by selecting appropriate thermodynamic and kinetic mineral data and by chemical equilibrium and kinetic modelling using the PHREEQC code 2) Setup and run of a 1D reactive transport model with the CrunchFlow code with a corroding iron source in contact with a 35 cm thick MX-80 bentonite buffer. A number of test cases were defined including a base case and various less likely as well bounding cases. 3) Evaluation of data and uncertainties in an iterative procedure leading to an optimized set of test cases and boundary conditions. In the Base Case, kinetic precipitation of different iron oxides and siderite was considered. The results after a 5000 year interaction period are depicted in Fig. 1. These indicate that the iron source is completely corroded to green rust, probably the thermodynamic most stable phase under KBS-3H type conditions. The transformation of smectite is negligible. The corrosion reaction stabilizes pH to slightly alkaline conditions. The simulations also indicate that later changes are only minor which is explained by the low solubility of the corrosion product and the very slow kinetics of the smectite transformation reactions. The results from the other test cases largely confirm the findings from the Base Case. The largest impact arises from sulphate reduction in case of microbial activity at the iron/buffer interface. In combination with corrosion- produced hydrogen acting as electron donor this may lead to considerable pH increase and thus indirectly affect

  7. A Bacterial Component to Alzheimer's-Type Dementia Seen via a Systems Biology Approach that Links Iron Dysregulation and Inflammagen Shedding to Disease.

    Science.gov (United States)

    Pretorius, Etheresia; Bester, Janette; Kell, Douglas B

    2016-06-18

    The progression of Alzheimer's disease (AD) is accompanied by a great many observable changes, both molecular and physiological. These include oxidative stress, neuroinflammation, and (more proximal to cognitive decline) the death of neuronal and other cells. A systems biology approach seeks to organize these observed variables into pathways that discriminate those that are highly involved (i.e., causative) from those that are more usefully recognized as bystander effects. We review the evidence that iron dysregulation is one of the central causative pathway elements here, as this can cause each of the above effects. In addition, we review the evidence that dormant, non-growing bacteria are a crucial feature of AD, that their growth in vivo is normally limited by a lack of free iron, and that it is this iron dysregulation that is an important factor in their resuscitation. Indeed, bacterial cells can be observed by ultrastructural microscopy in the blood of AD patients. A consequence of this is that the growing cells can shed highly inflammatory components such as lipopolysaccharides (LPS). These too are known to be able to induce (apoptotic and pyroptotic) neuronal cell death. There is also evidence that these systems interact with elements of vitamin D metabolism. This integrative systems approach has strong predictive power, indicating (as has indeed been shown) that both natural and pharmaceutical iron chelators might have useful protective roles in arresting cognitive decline, and that a further assessment of the role of microbes in AD development is more than highly warranted. PMID:27340854

  8. Uptake and transport of superparamagnetic iron oxide nanoparticles through human brain capillary endothelial cells.

    Science.gov (United States)

    Thomsen, L B; Linemann, T; Pondman, K M; Lichota, J; Kim, K S; Pieters, R J; Visser, G M; Moos, T

    2013-10-16

    The blood-brain barrier (BBB) formed by brain capillary endothelial cells (BCECs) constitutes a firm physical, chemical, and immunological barrier, making the brain accessible to only a few percent of potential drugs intended for treatment inside the central nervous system. With the purpose of overcoming the restraints of the BBB by allowing the transport of drugs, siRNA, or DNA into the brain, a novel approach is to use superparamagnetic iron oxide nanoparticles (SPIONs) as drug carriers. The aim of this study was to investigate the ability of fluorescent SPIONs to pass through human brain microvascular endothelial cells facilitated by an external magnet. The ability of SPIONs to penetrate the barrier was shown to be significantly stronger in the presence of an external magnetic force in an in vitro BBB model. Hence, particles added to the luminal side of the in vitro BBB model were found in astrocytes cocultured at a remote distance on the abluminal side, indicating that particles were transported through the barrier and taken up by astrocytes. Addition of the SPIONs to the culture medium did not negatively affect the viability of the endothelial cells. The magnetic force-mediated dragging of SPIONs through BCECs may denote a novel mechanism for the delivery of drugs to the brain. PMID:23919894

  9. New perspectives on bacterial ferredoxin evolution

    Science.gov (United States)

    George, D. G.; Hunt, L. T.; Yeh, L.-S. L.; Barker, W. C.

    1985-01-01

    Ferredoxins are low-molecular-weight, nonheme, iron proteins which function as electron carriers in a wide variety of electron transport chains. Howard et al. (1983) have suggested that the amino end of Azotobacter vinelandii ferredoxin shows a greater similarity to the carboxyl end of ferredoxin from Chromatium vinosum and that their half-chain sequences are homologous when the half-chains of either species are considered in inverse order. Examination of this proposition has made it necessary to reevaluate previous conclusions concerning the evolution of bacterial ferredoxin. Attention is given to the properties of the bacterial ferredoxin sequences, and the evolution of the bacterial ferredoxins.

  10. A new investigation of iron cross sections via spherical-shell transmission measurements and particle transport calculations

    International Nuclear Information System (INIS)

    We are engaged in a multi-year project to study neutron scattering interactions in iron, the principal objective of which is to investigate the well-known deficiency that exists in reactor pressure vessel neutron fluence determinations. Specifically, we are using the spherical-shell transmission method, employing iron shells with different thicknesses, and neutron time-of-flight measurements of the scattered neutrons, in an effort to precisely determine specific energy regions over which deficiencies in the non-elastic scattering cross section for neutron scattering in iron appear to exist. The analysis of the experimental data involves correlating the data with theoretical calculations of neutron transport through the iron spheres in order to evaluate the degree to which the calculated neutron spectra predict the measured spectra relative to different types of particle interactions. In doing so, we have developed new methodologies for performing neutron transport calculations that will be useful to a range of transport problems. Preliminary results show good agreement between the experimental data and the calculated distribution of neutron flight times over much of the data range, except for the contribution due to breakup neutrons. (author)

  11. Regulation of enterobactin iron transport in Escherichia coli: characterization of ent::Mu d(Apr lac) operon fusions.

    OpenAIRE

    Fleming, T P; Nahlik, M S; McIntosh, M A

    1983-01-01

    The vector Mu d(Apr lac) was utilized to construct operon fusions in the Escherichia coli enterobactin (ent) biosynthetic and transport genes. Enzyme assays indicated a 5- to 15-fold increase in the expression of beta-galactosidase when the fusion strains were grown under iron-deficient conditions. The polarity effects seen by Mu d insertions into entA, entC, and entE were consistent with a single operon, entA(CGB)E. The direction of transcription from iron-regulated promoters was determined ...

  12. The putative siderophore-dependent iron transport network in Anabaena sp. PCC 7120

    OpenAIRE

    Stevanovic, Mara

    2015-01-01

    Cyanobacteria belong to the most widely distributed microorganisms in the biosphere and contribute significantly to global primary production. Their metabolism is based on oxygenic photosynthesis and some cyanobacteria can fix elemental nitrogen. Obligate photosynthetic diazotrophs have a particularly high iron demand in comparison to heterotrophic bacteria. Nevertheless the understanding of iron acquisition in cyanobacteria is just beginning to emerge. Iron acquisition in bacteria comprises ...

  13. Mutational Analysis of Hemoglobin Binding and Heme Utilization by a Bacterial Hemoglobin Receptor

    OpenAIRE

    Fusco, W. G.; Choudhary, N. R.; Council, S.E.; Collins, E J; Leduc, I.

    2013-01-01

    Iron is an essential nutrient for most living organisms. To acquire iron from their environment, Gram-negative bacteria use TonB-dependent transporters that bind host proteins at the bacterial surface and transport iron or heme to the periplasm via the Ton machinery. TonB-dependent transporters are barrel-shaped outer membrane proteins with 22 transmembrane domains, 11 surface-exposed loops, and a plug domain that occludes the pore. To identify key residues of TonB-dependent transporters invo...

  14. The solubility of iron sulfides and their role in mass transport in Girdler-Sulfide heavy water plants

    International Nuclear Information System (INIS)

    The solubilities of several iron sulfides, mackinawite FeSsub((1-x)), troilite FeS, pyrrhotite Fesub((1-x))S (monoclinic and hexagonal), and pyrite FeS2 have been determined in aqueous H2S solution at 0.1 MPa and 1.8 MPa H2S pressures between 25 deg and 125 deg C. The dependence of solubility on the pH of the medium has also been studied. It is concluded that since mackinawite is the most soluble of the iron sulfides, and has the highest dissolution rate and the steepest decline in solubility with temperature, its prolonged formation during plant operation should be avoided to minimize iron transport from lower to higher temperature areas in Girdler-Sulfide (G.S.) heavy water plants. This can be achieved by a preconditioning of carbon steel surfaces to convert mackinawite to pyrrhotite and pyrite

  15. Antagonistic effects of humic acid and iron oxyhydroxide grain-coating on biochar nanoparticle transport in saturated sand.

    Science.gov (United States)

    Wang, Dengjun; Zhang, Wei; Zhou, Dongmei

    2013-05-21

    Biochar land application may result in multiple agronomic and environmental benefits (e.g., carbon sequestration, improving soil quality, and immobilizing environmental contaminants). However, our understanding of biochar particle transport is largely unknown in natural environments with significant heterogeneity in solid (e.g., patches of iron oxyhydroxide coating) and solution chemistry (e.g., the presence of natural organic matter), which represents a critical knowledge gap in assessing the environmental impact of biochar land application. Transport and retention kinetics of nanoparticles (NPs) from wheat straw biochars produced at two pyrolysis temperatures (i.e., 350 and 550 °C) were investigated in water-saturated sand columns at environmentally relevant concentrations of dissolved humic acid (HA, 0, 1, 5, and 10 mg L(-1)) and fractional surface coverage of iron oxyhydroxide coatings on sand grains (ω, 0.16, 0.28, and 0.40). Transport of biochar NPs increased with increasing HA concentration, largely because of enhanced repulsive interaction energy between biochar NPs and sand grains. Conversely, transport of biochar NPs decreased significantly with increasing ω due to enhanced electrostatic attraction between negatively charged biochar NPs and positively charged iron oxyhydroxides. At a given ω of 0.28, biochar NPs were less retained with increasing HA concentration due to increased electrosteric repulsion between biochar NPs and sand grains. Experimental breakthrough curves and retention profiles were well described using a two-site kinetic retention model that accounted for Langmuirian blocking or random sequential adsorption at one site. Consistent with the blocking effect, the often observed flat retention profiles stemmed from decreased retention rate and/or maximum retention capacity at a higher HA concentration or smaller ω. The antagonistic effects of HA and iron oxyhydroxide grain-coating imparted on the mobility of biochar NPs suggest that

  16. Performance evaluation of cast iron pipe for crude oil and salt water transportation; Avaliacao e desempenho de duto de aco fundido no transporte de petroleo com aguas salgadas

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Carlos Alexandre Martins da [PETROBRAS Transporte S.A. (TRANSPETRO), Rio de Janeiro, RJ (Brazil); Mainier, Fernando B. [Universidade Federal Fluminense, Niteroi, RJ (Brazil)

    2005-07-01

    The present paper aims to study and to evaluate the performance of casting iron pipe for transportation of salty and produced waters, presented in the oil industry, where salt contents ranging on very large values. The cast iron above mentioned has an yield strength of 23 kg/mm{sup 2}, tensile strength of de 46 kg/mm{sup 2} (minimum) and an elongation of 15%, and contents of some chemical alloys, such as Cr (0,8 -1,3 %), Mn (1,5 % max) and Si (1,%). Nevertheless it is an exploratory study, the dynamic tests of weight loss carried out in laboratory, with specimens machined from a used pipe piece, with salty solution (3,5 % NaCl) aerated media, has shown very promising results, enabling to qualify, satisfactorily, such material for using in transportation and transferring operations of fluids with a high salty contents, such as crude oil. (author)

  17. Comparison of the transport of the aggregates of nanoscale zerovalent iron under vertical and horizontal flow.

    Science.gov (United States)

    Li, Jing; Ghoshal, Subhasis

    2016-02-01

    Direct injection of nanoscale zerovalent iron (NZVI) particles is being considered for remediation of contaminated sites. However, the transport characteristics of NZVI under horizontal flow conditions are not fully understood. In this study, NZVI particles were stabilized with carboxymethyl cellulose (CMC) and injected in vertical and horizontal columns to compare the effects of the flow direction on the transport. Columns were packed with sand of mean grain diameters of 180, 340 or 1140 µm (referred to as fine, intermediate and coarse sand, respectively), and were injected with CMC-NZVI suspensions of 0.3, 1 or 3 g Fe L(-1). Experimental breakthrough curves showed that with the coarse and intermediate sands, the steady-state effluent concentration in the horizontal column were up to 84% lower than those in the vertical column regardless of the initial NZVI concentration. However, in the fine sand the differences were insignificant, except at the highest NZVI particle concentration. Additionally, in the horizontally-oriented columns containing the coarse or intermediated sand, NZVI aggregates particles were non-uniformly distributed in the cross-section of the columns and there higher deposition in the bottom-half of the cross-section due to gravity effects. These deposition patterns can be accounted for, in part, by the gravitational settling of the large aggregates of NZVI, especially at high NZVI concentrations. A particle trajectory analysis in three dimensions demonstrated that under horizontal flow, gravity forces resulted in lower deposition of NZVI on the bottom-half of a single collector, as particles approaching the bottom-half of the collector were deflected by gravity to collectors below. PMID:26498094

  18. Modeling of neutron and photon transport in iron and concrete radiation shields by using Monte Carlo method

    CERN Document Server

    Žukauskaitėa, A; Plukienė, R; Ridikas, D

    2007-01-01

    Particle accelerators and other high energy facilities produce penetrating ionizing radiation (neutrons and γ-rays) that must be shielded. The objective of this work was to model photon and neutron transport in various materials, usually used as shielding, such as concrete, iron or graphite. Monte Carlo method allows obtaining answers by simulating individual particles and recording some aspects of their average behavior. In this work several nuclear experiments were modeled: AVF 65 (AVF cyclotron of Research Center of Nuclear Physics, Osaka University, Japan) – γ-ray beams (1-10 MeV), HIMAC (heavy-ion synchrotron of the National Institute of Radiological Sciences in Chiba, Japan) and ISIS-800 (ISIS intensive spallation neutron source facility of the Rutherford Appleton laboratory, UK) – high energy neutron (20-800 MeV) transport in iron and concrete. The calculation results were then compared with experimental data.compared with experimental data.

  19. Humic acid facilitates the transport of ARS-labeled hydroxyapatite nanoparticles in iron oxyhydroxide-coated sand.

    Science.gov (United States)

    Wang, Dengjun; Bradford, Scott A; Harvey, Ronald W; Gao, Bin; Cang, Long; Zhou, Dongmei

    2012-03-01

    Hydroxyapatite nanoparticles (nHAP) have been widely used to remediate soil and wastewater contaminated with metals and radionuclides. However, our understanding of nHAP transport and fate is limited in natural environments that exhibit significant variability in solid and solution chemistry. The transport and retention kinetics of Alizarin red S (ARS)-labeled nHAP were investigated in water-saturated packed columns that encompassed a range of humic acid concentrations (HA, 0-10 mg L(-1)), fractional surface coverage of iron oxyhydroxide coatings on sand grains (λ, 0-0.75), and pH (6.0-10.5). HA was found to have a marked effect on the electrokinetic properties of ARS-nHAP, and on the transport and retention of ARS-nHAP in granular media. The transport of ARS-nHAP was found to increase with increasing HA concentration because of enhanced colloidal stability and the reduced aggregate size. When HA = 10 mg L(-1), greater ARS-nHAP attachment occurred with increasing λ because of increased electrostatic attraction between negatively charged nanoparticles and positively charged iron oxyhydroxides, although alkaline conditions (pH 8.0 and 10.5) reversed the surface charge of the iron oxyhydroxides and therefore decreased deposition. The retention profiles of ARS-nHAP exhibited a hyperexponential shape for all test conditions, suggesting some unfavorable attachment conditions. Retarded breakthrough curves occurred in sands with iron oxyhydroxide coatings because of time-dependent occupation of favorable deposition sites. Consideration of the above effects is necessary to improve remediation efficiency of nHAP for metals and actinides in soils and subsurface environments. PMID:22316080

  20. Uptake of biotin by Chlamydia Spp. through the use of a bacterial transporter (BioY and a host-cell transporter (SMVT.

    Directory of Open Access Journals (Sweden)

    Derek J Fisher

    Full Text Available Chlamydia spp. are obligate intracellular Gram-negative bacterial pathogens that cause disease in humans and animals. Minor variations in metabolic capacity between species have been causally linked to host and tissue tropisms. Analysis of the highly conserved genomes of Chlamydia spp. reveals divergence in the metabolism of the essential vitamin biotin with genes for either synthesis (bioF_2ADB and/or transport (bioY. Streptavidin blotting confirmed the presence of a single biotinylated protein in Chlamydia. As a first step in unraveling the need for divergent biotin acquisition strategies, we examined BioY (CTL0613 from C. trachomatis 434/Bu which is annotated as an S component of the type II energy coupling-factor transporters (ECF. Type II ECFs are typically composed of a transport specific component (S and a chromosomally unlinked energy module (AT. Intriguingly, Chlamydia lack recognizable AT modules. Using (3H-biotin and recombinant E. coli expressing CTL0613, we demonstrated that biotin was transported with high affinity (a property of Type II ECFs previously shown to require an AT module and capacity (apparent K(m of 3.35 nM and V(max of 55.1 pmol×min(-1×mg(-1. Since Chlamydia reside in a host derived membrane vacuole, termed an inclusion, we also sought a mechanism for transport of biotin from the cell cytoplasm into the inclusion vacuole. Immunofluorescence microscopy revealed that the mammalian sodium multivitamin transporter (SMVT, which transports lipoic acid, biotin, and pantothenic acid into cells, localizes to the inclusion. Since Chlamydia also are auxotrophic for lipoic and pantothenic acids, SMVT may be subverted by Chlamydia to move multiple essential compounds into the inclusion where BioY and another transporter(s would be present to facilitate transport into the bacterium. Collectively, our data validates the first BioY from a pathogenic organism and describes a two-step mechanism by which Chlamydia transport biotin

  1. Survival and viability of cells from iron depositing bacterial strains in pretests for the EXPOSE-R2-Experiment

    OpenAIRE

    Feyh, N.; de Vera, J.P.; Szewzyk, U

    2014-01-01

    Five environmental isolates (Pseudomonas sp. BS1, Hyphomonas sp. BS2, Tetrasphaera sp. FL1, Pedomicrobium sp. FL6 and Leptothrix sp. OT_B_406) were chosen for EXPOSE-R2 including pretests (EVT1/2, SVT) due to their ability to form Fe(III)-oxyhydroxide-containing biofilms as observed for natural communities of iron depositing bacteria. Samples were produced by drying iron-containing cell aggregates on Mars regolith simulant mixtures (S-/P-MRS) (Böttger et al., 2012). Different Mars- and ...

  2. The endocytic receptor megalin binds the iron transporting neutrophil-gelatinase-associated lipocalin with high affinity and mediates its cellular uptake

    DEFF Research Database (Denmark)

    Hvidberg, Vibeke; Jacobsen, Christian; Strong, Roland K;

    2005-01-01

    Neutrophil-gelatinase-associated lipocalin (NGAL) is a prominent protein of specific granules of human neutrophils also synthesized by epithelial cells during inflammation. NGAL binds bacterial siderophores preventing bacteria from retrieving iron from this source. Also, NGAL may be important in...

  3. The Vacuolar Manganese Transporter MTP8 Determines Tolerance to Iron Deficiency-Induced Chlorosis in Arabidopsis.

    Science.gov (United States)

    Eroglu, Seckin; Meier, Bastian; von Wirén, Nicolaus; Peiter, Edgar

    2016-02-01

    Iron (Fe) deficiency is a widespread nutritional disorder on calcareous soils. To identify genes involved in the Fe deficiency response, Arabidopsis (Arabidopsis thaliana) transfer DNA insertion lines were screened on a high-pH medium with low Fe availability. This approach identified METAL TOLERANCE PROTEIN8 (MTP8), a member of the Cation Diffusion Facilitator family, as a critical determinant for the tolerance to Fe deficiency-induced chlorosis, also on soil substrate. Subcellular localization to the tonoplast, complementation of a manganese (Mn)-sensitive Saccharomyces cerevisiae yeast strain, and Mn sensitivity of mtp8 knockout mutants characterized the protein as a vacuolar Mn transporter suitable to prevent plant cells from Mn toxicity. MTP8 expression was strongly induced on low-Fe as well as high-Mn medium, which were both strictly dependent on the transcription factor FIT, indicating that high-Mn stress induces Fe deficiency. mtp8 mutants were only hypersensitive to Fe deficiency when Mn was present in the medium, which further suggested an Mn-specific role of MTP8 during Fe limitation. Under those conditions, mtp8 mutants not only translocated more Mn to the shoot than did wild-type plants but suffered in particular from critically low Fe concentrations and, hence, Fe chlorosis, although the transcriptional Fe deficiency response was up-regulated more strongly in mtp8. The diminished uptake of Fe from Mn-containing low-Fe medium by mtp8 mutants was caused by an impaired ability to boost the ferric chelate reductase activity, which is an essential process in Fe acquisition. These findings provide a mechanistic explanation for the long-known interference of Mn in Fe nutrition and define the molecular processes by which plants alleviate this antagonism. PMID:26668333

  4. Novel two-component transmembrane transcription control: regulation of iron dicitrate transport in Escherichia coli K-12.

    Science.gov (United States)

    Van Hove, B; Staudenmaier, H; Braun, V

    1990-12-01

    Citrate and iron have to enter only the periplasmic space in order to induce the citrate-dependent iron(III) transport system of Escherichia coli. The five transport genes fecABCDE form an operon and are transcribed from fecA to fecE. Two genes, termed fecI and fecR, that mediate induction by iron(III) dicitrate have been identified upstream of fecA. The fecI gene encodes a protein of 173 amino acids (molecular weight, 19,478); the fecR gene encodes a protein of 317 amino acids (molecular weight, 35,529). Chromosomal fecI::Mu d1 mutants were unable to grow with iron(III) dicitrate as the sole iron source and synthesized no FecA outer membrane receptor protein. Growth was restored by transformation with plasmids encoding fecI or fecI and fecR. FecA and beta-galactosidase syntheses under transcription control of the fecB gene (fecB::Mu d1) were constitutive in fecI transformants and were regulated by iron(III) dicitrate in fecI fecR transformants. The amino acid sequence of the FecI protein contains a region close to the carboxy-terminal end for which a helix-turn-helix motif is predicted, which is typical for DNA-binding regulatory proteins. The FecI protein was found in the membrane, and the FecR protein was found in the periplasmic fraction. It is proposed that the FecR protein is the sensor that recognizes iron(III) dicitrate in the periplasm. The FecI protein activates fec gene expression by binding to the fec operator region. In the absence of citrate, FecR inactivates FecI. The lack of sequence homologies to other transmembrane signaling proteins and the location of the two proteins suggest a new type of transmembrane control mechanism. PMID:2254251

  5. Transport characteristics of nanoscale zero-valent iron carried by three different "vehicles" in porous media.

    Science.gov (United States)

    Su, Yan; Zhao, Yong S; Li, Lu L; Qin, Chuan Y; Wu, Fan; Geng, Nan N; Lei, Jian S

    2014-01-01

    This study investigated the transport properties of nanoscale zero-valent iron (Fe(0)) (nZVI) carried by three vehicles: water, sodium dodecyl sulfate (SDS) solution, and SDS foam. Batch experiments were conducted to assess the sedimentation capability of nZVI particles in these three vehicles. Column experiments were conducted to investigate the transport properties of nZVI in porous media formed with different sizes of sand (0.25 mm to 0.5 mm, 0.5 mm to 0.9 mm, and 0.9 mm to 1.4 mm). Three main results were obtained. First, the batch experiments revealed that the stabilities of nZVI particles in SDS solution and SDS foam were improved, compared with that of nZVI particles in water. Moreover, the sedimentation of nZVI in foam was closely associated with the foam drainage volume. The nZVI content in foam was similar to that in the original foaming suspension, and the nZVI particle distribution in foam became significantly more uniform at a stirring speed of 3000 r/min. Second, the transport of nZVI was enhanced by foam compared with water and SDS solution for 0.25 mm to 0.5 mm diameter sand. For sand with diameters of 0.5 mm to 0.9 mm and 0.9 mm to 1.4 mm, the mobility of nZVI carried by SDS solution was optimal, followed by that of nZVI carried by foam and water. Thus, the mobility of nZVI in finer sand was significantly enhanced by foam, compared with that in coarse sand. In contrast, compared with the bare nZVI suspension and nZVI-laden foam, the spatial distribution of nZVI particles carried by SDS solution was significantly uniform along the column length. Third, the SDS concentration significantly influenced the migration of nZVI in porous media. The enhancement in the migration of nZVI carried by SDS solution was greater at an SDS dose of 0.25% compared with that at the other three doses (0.2%, 0.5%, and 1%) for sand with a 0.25 mm to 0.5 mm diameter. Increased SDS concentrations positively affected the transport of nZVI by foam for sand with a

  6. Simultaneous transport of two bacterial strains in intact cores from Oyster, Virginia: biological effects and numerical modeling.

    Science.gov (United States)

    Dong, Hailiang; Rothmel, Randi; Onstott, Tullis C; Fuller, Mark E; DeFlaun, Mary F; Streger, Sheryl H; Dunlap, Robb; Fletcher, Madilyn

    2002-05-01

    The transport characteristics of two adhesion-deficient, indigenous groundwater strains, Comamonas sp. strain DA001 and Erwinia herbicola OYS2-A, were studied by using intact sediment cores (7 by 50 cm) from Oyster, Va. Both strains are gram-negative rods (1.10 by 0.56 and 1.56 by 0.46 microm, respectively) with strongly hydrophilic membranes and a slightly negative surface charge. The two strains exhibited markedly different behaviors when they were transported through granular porous sediment. To eliminate any effects of physical and chemical heterogeneity on bacterial transport and thus isolate the biological effect, the two strains were simultaneously injected into the same core. DA001 cells were metabolically labeled with (35)S and tagged with a vital fluorescent stain, while OYS2-A cells were metabolically labeled with (14)C. The fast decay of (35)S allowed deconvolution of the two isotopes (and therefore the two strains). Dramatic differences in the transport behaviors were observed. The breakthrough of DA001 and the breakthrough of OYS2-A both occurred before the breakthrough of a conservative tracer (termed differential advection), with effluent recoveries of 55 and 30%, respectively. The retained bacterial concentration of OYS2-A in the sediment was twofold higher than that of DA001. Among the cell properties analyzed, the statistically significant differences between the two strains were cell length and diameter. The shorter, larger-diameter DA001 cells displayed a higher effluent recovery than the longer, smaller-diameter OYS2-A cells. CXTFIT modeling results indicated that compared to the DA001 cells, the OYS2-A cells experienced lower pore velocity, higher porosity, a higher attachment rate, and a lower detachment rate. All these factors may contribute to the observed differences in transport. PMID:11976080

  7. Interacting Effects of Light and Iron Availability on the Coupling of Photosynthetic Electron Transport and CO2-Assimilation in Marine Phytoplankton.

    Directory of Open Access Journals (Sweden)

    Nina Schuback

    Full Text Available Iron availability directly affects photosynthesis and limits phytoplankton growth over vast oceanic regions. For this reason, the availability of iron is a crucial variable to consider in the development of active chlorophyll a fluorescence based estimates of phytoplankton primary productivity. These bio-optical approaches require a conversion factor to derive ecologically-relevant rates of CO2-assimilation from estimates of electron transport in photosystem II. The required conversion factor varies significantly across phytoplankton taxa and environmental conditions, but little information is available on its response to iron limitation. In this study, we examine the role of iron limitation, and the interacting effects of iron and light availability, on the coupling of photosynthetic electron transport and CO2-assimilation in marine phytoplankton. Our results show that excess irradiance causes increased decoupling of carbon fixation and electron transport, particularly under iron limiting conditions. We observed that reaction center II specific rates of electron transport (ETR(RCII, mol e- mol RCII(-1 s(-1 increased under iron limitation, and we propose a simple conceptual model for this observation. We also observed a strong correlation between the derived conversion factor and the expression of non-photochemical quenching. Utilizing a dataset from in situ phytoplankton assemblages across a coastal--oceanic transect in the Northeast subarctic Pacific, this relationship was used to predict ETR(RCII: CO2-assimilation conversion factors and carbon-based primary productivity from FRRF data, without the need for any additional measurements.

  8. Determination of thermooptical and transport parameters of ε iron(III) oxide-based nanocomposites by beam deflection spectroscopy

    Science.gov (United States)

    Korte, Dorota; Carraro, Giorgio; Maccato, Chiara; Franko, Mladen

    2015-04-01

    In this work, photothermal beam deflection (PBD) experiments have been used to characterize the thermooptical and transport properties of ε-Fe2O3-based nanocomposites. In particular, iron(III) nanostructures have been functionalized with Au, Ag and Cu nanoparticles, tailoring both their nano-organization and their chemical state. In order to elucidate the correlation between the thermooptical and transport parameters, the structural, compositional and morphological properties of Fe2O3-based systems were studied by field emission scanning electron microscopy (FE-SEM), X-ray photoelectron spectroscopy (XPS) and X-ray diffraction (XRD). It was observed that the optothermal and transport parameters were influenced by the nature and oxidation state of the nanoparticles, which can serve as a key tool to master the material properties for their application in light-assisted processes.

  9. Nutrient and Bacterial Transport From Agricultural Lands Fertlized With Different Animal Manures

    OpenAIRE

    Mishra, Anurag

    2003-01-01

    The increase of animal agriculture coupled with excess manure production, and the reduced availability of land has led to the over application of animal manure on agricultural fields. The excessive application of manure is responsible for nutrient and bacterial pollution of downstream waterbodies. Manure application based on the crop phosphorus (P) requirements has been recommended as a viable method to reduce nutrient pollution. A plot scale study was conducted to measure the loss of nutrien...

  10. Structure and Mechanism of the S Component of a Bacterial ECF Transporter

    Energy Technology Data Exchange (ETDEWEB)

    P Zhang; J Wang; Y Shi

    2011-12-31

    The energy-coupling factor (ECF) transporters, responsible for vitamin uptake in prokaryotes, are a unique family of membrane transporters. Each ECF transporter contains a membrane-embedded, substrate-binding protein (known as the S component), an energy-coupling module that comprises two ATP-binding proteins (known as the A and A' components) and a transmembrane protein (known as the T component). The structure and transport mechanism of the ECF family remain unknown. Here we report the crystal structure of RibU, the S component of the ECF-type riboflavin transporter from Staphylococcus aureus at 3.6-{angstrom} resolution. RibU contains six transmembrane segments, adopts a previously unreported transporter fold and contains a riboflavin molecule bound to the L1 loop and the periplasmic portion of transmembrane segments 4-6. Structural analysis reveals the essential ligand-binding residues, identifies the putative transport path and, with sequence alignment, uncovers conserved structural features and suggests potential mechanisms of action among the ECF transporters.

  11. Effect of cargo size and shape on the transport efficiency of the bacterial Tat translocase.

    Science.gov (United States)

    Whitaker, Neal; Bageshwar, Umesh; Musser, Siegfried M

    2013-04-01

    The Tat machinery translocates fully-folded and oligomeric substrates. The passage of large, bulky cargos across an ion-tight membrane suggests the need to match pore and cargo size, and therefore that Tat transport efficiency may depend on both cargo size and shape. A series of cargos of different sizes and shapes were generated using the natural Tat substrate pre-SufI as a base. Four (of 17) cargos transported with significant (>20% of wild-type) efficiencies. These results indicate that cargo size and shape significantly influence Tat transportability. PMID:23422074

  12. Evidence that Bacterial ABC-Type Transporter Imports Free EDTA for Metabolism▿

    OpenAIRE

    Zhang, Hua; Herman, Jacob P.; Bolton, Harvey; Zhang, Zhicheng; Clark, Sue; XUN, Luying

    2007-01-01

    EDTA, a common chelating agent, is becoming a major organic pollutant in the form of metal-EDTA complexes in surface waters, partly due to its recalcitrance to biodegradation. Even an EDTA-degrading bacterium, BNC1, does not degrade stable metal-EDTA complexes. In the present study, an ABC-type transporter was identified for possible uptake of EDTA because the transporter genes and the EDTA monooxygenase gene were expressed from a single operon in BNC1. The ABC-type transporter had a periplas...

  13. Iron homeostasis and nutritional iron deficiency.

    Science.gov (United States)

    Theil, Elizabeth C

    2011-04-01

    Nonheme food ferritin (FTN) iron minerals, nonheme iron complexes, and heme iron contribute to the balance between food iron absorption and body iron homeostasis. Iron absorption depends on membrane transporter proteins DMT1, PCP/HCP1, ferroportin (FPN), TRF2, and matriptase 2. Mutations in DMT1 and matriptase-2 cause iron deficiency; mutations in FPN, HFE, and TRF2 cause iron excess. Intracellular iron homeostasis depends on coordinated regulation of iron trafficking and storage proteins encoded in iron responsive element (IRE)-mRNA. The noncoding IRE-mRNA structures bind protein repressors, IRP1 or 2, during iron deficiency. Integration of the IRE-RNA in translation regulators (near the cap) or turnover elements (after the coding region) increases iron uptake (DMT1/TRF1) or decreases iron storage/efflux (FTN/FPN) when IRP binds. An antioxidant response element in FTN DNA binds Bach1, a heme-sensitive transcription factor that coordinates expression among antioxidant response proteins like FTN, thioredoxin reductase, and quinone reductase. FTN, an antioxidant because Fe(2+) and O(2) (reactive oxygen species generators) are consumed to make iron mineral, is also a nutritional iron concentrate that is an efficiently absorbed, nonheme source of iron from whole legumes. FTN protein cages contain thousands of mineralized iron atoms and enter cells by receptor-mediated endocytosis, an absorption mechanism distinct from transport of nonheme iron salts (ferrous sulfate), iron chelators (ferric-EDTA), or heme. Recognition of 2 nutritional nonheme iron sources, small and large (FTN), will aid the solution of iron deficiency, a major public health problem, and the development of new policies on iron nutrition. PMID:21346101

  14. Linking carbon and iron cycles by investigating transport, fate and mineralogy of iron-bearing colloids from peat-draining rivers - Scotland as model for high-latitude rivers

    Science.gov (United States)

    Wood, Deborah; Crocket, Kirsty; Brand, Tim; Stutter, Marc; Wilson, Clare; Schröder, Christian

    2016-04-01

    Linking carbon and iron cycles by investigating transport, fate and mineralogy of iron-bearing colloids from peat-draining rivers - Scotland as model for high-latitude rivers Wood, D.A¹, Crocket, K², Brand, T², Stutter, M³, Wilson, C¹ & Schröder, C¹ ¹Biological and Environmental Sciences, University of Stirling, Stirling, FK9 4LA ²Scottish Association for Marine Science, University of the Highlands and Islands, Dunbeg, Oban, PA37 1QA ³James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH The biogeochemical iron cycle exerts significant control on the carbon cycle¹. Iron is a limiting nutrient in large areas of the world's oceans and its bioavailability controls CO2 uptake by marine photosynthesizing microorganisms. While atmospheric iron inputs to the open ocean have been extensively measured, global river inputs have likely been underestimated because most major world rivers exhibit extensive iron removal by flocculation and sedimentation during seawater mixing. Iron minerals and organic matter mutually stabilise each other², which results in a 'rusty carbon sink' in sediments³ on the one hand but may also enhance transport beyond the salinity gradient on the other. Humic-rich, high latitude rivers have a higher iron-carrying capacity⁴‑⁶ but are underrepresented in iron flux calculations. The West Coast sea lochs in Scotland are fed by predominantly peatland drainage catchments, and the rivers entering the sea lochs carry a high load of organic matter. The short distance between many of these catchments and the coastal ocean facilitates source-to-sea research investigating transport, fate and mineralogy of iron-bearing colloids providing a good analogue for similar high latitude fjordic systems. We use SeaFAST+ICP-MS and Mössbauer spectroscopy to survey trace metal concentrations, with emphasis on iron concentrations, speciation and mineralogy, across salinity gradients. In combination with ultra-filtration techniques, this allows

  15. Gene expression profiling in Entamoeba histolytica identifies key components in iron uptake and metabolism.

    Directory of Open Access Journals (Sweden)

    Nora Adriana Hernández-Cuevas

    Full Text Available Entamoeba histolytica is an ameboid parasite that causes colonic dysentery and liver abscesses in humans. The parasite encounters dramatic changes in iron concentration during its invasion of the host, with relatively low levels in the intestinal lumen and then relatively high levels in the blood and liver. The liver notably contains sources of iron; therefore, the parasite's ability to use these sources might be relevant to its survival in the liver and thus the pathogenesis of liver abscesses. The objective of the present study was to identify factors involved in iron uptake, use and storage in E. histolytica. We compared the respective transcriptomes of E. histolytica trophozoites grown in normal medium (containing around 169 µM iron, low-iron medium (around 123 µM iron, iron-deficient medium (around 91 µM iron, and iron-deficient medium replenished with hemoglobin. The differentially expressed genes included those coding for the ATP-binding cassette transporters and major facilitator transporters (which share homology with bacterial siderophores and heme transporters and genes involved in heme biosynthesis and degradation. Iron deficiency was associated with increased transcription of genes encoding a subset of cell signaling molecules, some of which have previously been linked to adaptation to the intestinal environment and virulence. The present study is the first to have assessed the transcriptome of E. histolytica grown under various iron concentrations. Our results provide insights into the pathways involved in iron uptake and metabolism in this parasite.

  16. The bacterial dicarboxylate transporter VcINDY uses a two-domain elevator-type mechanism.

    Science.gov (United States)

    Mulligan, Christopher; Fenollar-Ferrer, Cristina; Fitzgerald, Gabriel A; Vergara-Jaque, Ariela; Kaufmann, Desirée; Li, Yan; Forrest, Lucy R; Mindell, Joseph A

    2016-03-01

    Secondary transporters use alternating-access mechanisms to couple uphill substrate movement to downhill ion flux. Most known transporters use a 'rocking bundle' motion, wherein the protein moves around an immobile substrate-binding site. However, the glutamate-transporter homolog GltPh translocates its substrate-binding site vertically across the membrane, through an 'elevator' mechanism. Here, we used the 'repeat swap' approach to computationally predict the outward-facing state of the Na(+)/succinate transporter VcINDY, from Vibrio cholerae. Our model predicts a substantial elevator-like movement of VcINDY's substrate-binding site, with a vertical translation of ~15 Å and a rotation of ~43°. Our observation that multiple disulfide cross-links completely inhibit transport provides experimental confirmation of the model and demonstrates that such movement is essential. In contrast, cross-links across the VcINDY dimer interface preserve transport, thus revealing an absence of large-scale coupling between protomers. PMID:26828963

  17. Staphylococcus aureus redirects central metabolism to increase iron availability.

    Directory of Open Access Journals (Sweden)

    David B Friedman

    2006-08-01

    Full Text Available Staphylococcus aureus pathogenesis is significantly influenced by the iron status of the host. However, the regulatory impact of host iron sources on S. aureus gene expression remains unknown. In this study, we combine multivariable difference gel electrophoresis and mass spectrometry with multivariate statistical analyses to systematically cluster cellular protein response across distinct iron-exposure conditions. Quadruplicate samples were simultaneously analyzed for alterations in protein abundance and/or post-translational modification state in response to environmental (iron chelation, hemin treatment or genetic (Deltafur alterations in bacterial iron exposure. We identified 120 proteins representing several coordinated biochemical pathways that are affected by changes in iron-exposure status. Highlighted in these experiments is the identification of the heme-regulated transport system (HrtAB, a novel transport system which plays a critical role in staphylococcal heme metabolism. Further, we show that regulated overproduction of acidic end-products brought on by iron starvation decreases local pH resulting in the release of iron from the host iron-sequestering protein transferrin. These findings reveal novel strategies used by S. aureus to acquire scarce nutrients in the hostile host environment and begin to define the iron and heme-dependent regulons of S. aureus.

  18. Guar gum solutions for improved delivery of iron particles in porous media (part 2): iron transport tests and modeling in radial geometry.

    Science.gov (United States)

    Tosco, Tiziana; Gastone, Francesca; Sethi, Rajandrea

    2014-10-01

    In the present work column transport tests were performed in order to study the mobility of guar-gum suspensions of microscale zero-valent iron particles (MZVI) in porous media. The results were analyzed with the purpose of implementing a radial model for the design of full scale interventions. The transport tests were performed using several concentrations of shear thinning guar gum solutions as stabilizer (1.5, 3 and 4g/l) and applying different flow rates (Darcy velocity in the range 1·10(-4) to 2·10(-3)m/s), representative of different distances from the injection point in the radial domain. Empirical relationships, expressing the dependence of the deposition and release parameters on the flow velocity, were derived by inverse fitting of the column transport tests using a modified version of E-MNM1D (Tosco and Sethi, 2010) and the user interface MNMs (www.polito.it/groundwater/software). They were used to develop a comprehensive transport model of MZVI suspensions in radial coordinates, called E-MNM1R, which takes into account the non Newtonian (shear thinning) rheological properties of the dispersant fluid and the porous medium clogging associated with filtration and sedimentation in the porous medium of both MZVI and guar gum residual undissolved particles. The radial model was run in forward mode to simulate the injection of MZVI dispersed in guar gum in conditions similar to those applied in the column transport tests. In a second stage, we demonstrated how the model can be used as a valid tool for the design and the optimization of a full scale intervention. The simulation results indicated that several concurrent aspects are to be taken into account for the design of a successful delivery of MZVI/guar gum slurries via permeation injection, and a compromise is necessary between maximizing the radius of influence of the injection and minimizing the injection pressure, to guarantee a sufficiently homogeneous distribution of the particles around the

  19. Guar gum solutions for improved delivery of iron particles in porous media (Part 2): Iron transport tests and modeling in radial geometry

    Science.gov (United States)

    Tosco, Tiziana; Gastone, Francesca; Sethi, Rajandrea

    2014-10-01

    In the present work column transport tests were performed in order to study the mobility of guar-gum suspensions of microscale zero-valent iron particles (MZVI) in porous media. The results were analyzed with the purpose of implementing a radial model for the design of full scale interventions. The transport tests were performed using several concentrations of shear thinning guar gum solutions as stabilizer (1.5, 3 and 4 g/l) and applying different flow rates (Darcy velocity in the range 1 · 10- 4 to 2 · 10- 3 m/s), representative of different distances from the injection point in the radial domain. Empirical relationships, expressing the dependence of the deposition and release parameters on the flow velocity, were derived by inverse fitting of the column transport tests using a modified version of E-MNM1D (Tosco and Sethi, 2010) and the user interface MNMs (www.polito.it/groundwater/software). They were used to develop a comprehensive transport model of MZVI suspensions in radial coordinates, called E-MNM1R, which takes into account the non Newtonian (shear thinning) rheological properties of the dispersant fluid and the porous medium clogging associated with filtration and sedimentation in the porous medium of both MZVI and guar gum residual undissolved particles. The radial model was run in forward mode to simulate the injection of MZVI dispersed in guar gum in conditions similar to those applied in the column transport tests. In a second stage, we demonstrated how the model can be used as a valid tool for the design and the optimization of a full scale intervention. The simulation results indicated that several concurrent aspects are to be taken into account for the design of a successful delivery of MZVI/guar gum slurries via permeation injection, and a compromise is necessary between maximizing the radius of influence of the injection and minimizing the injection pressure, to guarantee a sufficiently homogeneous distribution of the particles around the

  20. [A flavinogenic mutant of the yeast Pichia guilliermondii with impaired iron transport].

    Science.gov (United States)

    Shavlovskiĭ, G M; Fedorovich, D V; Zviagil'skais, R A

    1976-01-01

    A mutant of the yeast Pichia guilliermondii was produced by means of UV; the mutant was capable of riboflavin overproduction in the presence of high concentrations of iron in the medium. The content of total and non-hemin iron and cytochrome c, and the activity of catalase, were lower in the cells of the mutant than in the parent cells, while the activity of riboflavin synthetase was higher. The content of iron in the cells increased when the mutant was cultivated on media with citric acid, siderochromes of Klebsiella aerogenes, Neurospora crassa, Rhodotorula glutinis, cultural broth of Pichia ohmeri, and autolysate of brewer's yeast, whereas the flavinogenous activity of the cells decreased. Rotenone inhibited respiration of the intact cells of the mutant producing elevated amounts of riboflavin; therefore, flavinogenesis was not regulated by non-hemin iron on the first segment of the respiratory chain. Overproduction of riboflavin in the mutant of Pichia guilliermondii was proved to be a recessive property. PMID:933879

  1. Zinc transporter ZIP14 functions in hepatic zinc, iron and glucose homeostasis during the innate immune response (endotoxemia.

    Directory of Open Access Journals (Sweden)

    Tolunay Beker Aydemir

    Full Text Available ZIP14 (slc39A14 is a zinc transporter induced in response to pro-inflammatory stimuli. ZIP14 induction accompanies the reduction in serum zinc (hypozincemia of acute inflammation. ZIP14 can transport Zn(2+ and non-transferrin-bound Fe(2+ in vitro. Using a Zip14(-/- mouse model we demonstrated that ZIP14 was essential for control of phosphatase PTP1B activity and phosphorylation of c-Met during liver regeneration. In the current studies, a global screening of ZIP transporter gene expression in response to LPS-induced endotoxemia was conducted. Following LPS, Zip14 was the most highly up-regulated Zip transcript in liver, but also in white adipose tissue and muscle. Using ZIP14(-/- mice we show that ZIP14 contributes to zinc absorption from the gastrointestinal tract directly or indirectly as zinc absorption was decreased in the KOs. In contrast, Zip14(-/- mice absorbed more iron. The Zip14 KO mice did not exhibit hypozincemia following LPS, but do have hypoferremia. Livers of Zip14-/- mice had increased transcript abundance for hepcidin, divalent metal transporter-1, ferritin and transferrin receptor-1 and greater accumulation of iron. The Zip14(-/- phenotype included greater body fat, hypoglycemia and higher insulin levels, as well as increased liver glucose and greater phosphorylation of the insulin receptor and increased GLUT2, SREBP-1c and FASN expression. The Zip14 KO mice exhibited decreased circulating IL-6 with increased hepatic SOCS-3 following LPS, suggesting SOCS-3 inhibited insulin signaling which produced the hypoglycemia in this genotype. The results are consistent with ZIP14 ablation yielding abnormal labile zinc pools which lead to increased SOCS-3 production through G-coupled receptor activation and increased cAMP production as well as signaled by increased pSTAT3 via the IL-6 receptor, which inhibits IRS 1/2 phosphorylation. Our data show the role of ZIP14 in the hepatocyte is multi-functional since zinc and iron trafficking are

  2. Zinc Transporter ZIP14 Functions in Hepatic Zinc, Iron and Glucose Homeostasis during the Innate Immune Response (Endotoxemia)

    Science.gov (United States)

    Beker Aydemir, Tolunay; Chang, Shou-Mei; Guthrie, Gregory J.; Maki, Alyssa B.; Ryu, Moon-Suhn; Karabiyik, Afife; Cousins, Robert J.

    2012-01-01

    ZIP14 (slc39A14) is a zinc transporter induced in response to pro-inflammatory stimuli. ZIP14 induction accompanies the reduction in serum zinc (hypozincemia) of acute inflammation. ZIP14 can transport Zn2+ and non-transferrin-bound Fe2+ in vitro. Using a Zip14−/− mouse model we demonstrated that ZIP14 was essential for control of phosphatase PTP1B activity and phosphorylation of c-Met during liver regeneration. In the current studies, a global screening of ZIP transporter gene expression in response to LPS-induced endotoxemia was conducted. Following LPS, Zip14 was the most highly up-regulated Zip transcript in liver, but also in white adipose tissue and muscle. Using ZIP14−/− mice we show that ZIP14 contributes to zinc absorption from the gastrointestinal tract directly or indirectly as zinc absorption was decreased in the KOs. In contrast, Zip14−/− mice absorbed more iron. The Zip14 KO mice did not exhibit hypozincemia following LPS, but do have hypoferremia. Livers of Zip14−/− mice had increased transcript abundance for hepcidin, divalent metal transporter-1, ferritin and transferrin receptor-1 and greater accumulation of iron. The Zip14−/− phenotype included greater body fat, hypoglycemia and higher insulin levels, as well as increased liver glucose and greater phosphorylation of the insulin receptor and increased GLUT2, SREBP-1c and FASN expression. The Zip14 KO mice exhibited decreased circulating IL-6 with increased hepatic SOCS-3 following LPS, suggesting SOCS-3 inhibited insulin signaling which produced the hypoglycemia in this genotype. The results are consistent with ZIP14 ablation yielding abnormal labile zinc pools which lead to increased SOCS-3 production through G-coupled receptor activation and increased cAMP production as well as signaled by increased pSTAT3 via the IL-6 receptor, which inhibits IRS 1/2 phosphorylation. Our data show the role of ZIP14 in the hepatocyte is multi-functional since zinc and iron trafficking are

  3. KBS-3H. Reactive transport modelling of iron-bentonite interactions, an update for the Olkiluoto case

    International Nuclear Information System (INIS)

    According to the KBS-3H concept, each copper canister containing spent nuclear fuel will be surrounded by a bentonite buffer and a perforated cylinder. The originally planned material for the perforated steel cylinder shell has been carbon steel. After emplacement, the steel material will corrode anaerobically in contact with water and generate hydrogen, iron species and hydroxyl ions. Iron corrosion products will be formed at the steel surface, but in addition, the released species may interact with the clay and lead to undesirable effects, such as montmorillonite transformation and cementation. The impact of corrosion and iron-bentonite interactions has been assessed for Olkiluoto-specific conditions by reactive transport modelling using the CrunchFlow code. The main focus of this modelling exercise was to update the previous modelling study of Wersin et al. (2007). by accounting for new thermodynamic data on clays and uncertainties in precipitation rates of iron reaction products. The modelling strategy was first to select appropriate thermodynamic and kinetic mineral by review of current data, in particular of the THERMODDEM database, and by chemical equilibrium modelling. Second, a 1D reactive transport model which includes a corroding iron source from which solutes can diffuse into the buffer and interact with the clay and accessory minerals was set up in a similar way as that applied in Wersin et al. (2007). A number of test cases were defined, including a Base Case and various less likely as well as bounding cases. The modelling results largely confirmed previous findings in that the zone of alteration was predicted to remain spatially limited for very long times. However, they highlighted that under unfavourable conditions during the initial corrosion phase (before complete corrosion of the shell), pronounced increase in pH might occur, which would lead to enhanced dissolution of the montmorillonite clay. Factors favouring pH increase were found to be slow

  4. KBS-3H. Reactive transport modelling of iron-bentonite interactions, an update for the Olkiluoto case

    Energy Technology Data Exchange (ETDEWEB)

    Birgersson, M. [Clay Technology AB, Lund (Sweden); Wersin, P. [Bern Univ. (Switzerland)

    2014-03-15

    According to the KBS-3H concept, each copper canister containing spent nuclear fuel will be surrounded by a bentonite buffer and a perforated cylinder. The originally planned material for the perforated steel cylinder shell has been carbon steel. After emplacement, the steel material will corrode anaerobically in contact with water and generate hydrogen, iron species and hydroxyl ions. Iron corrosion products will be formed at the steel surface, but in addition, the released species may interact with the clay and lead to undesirable effects, such as montmorillonite transformation and cementation. The impact of corrosion and iron-bentonite interactions has been assessed for Olkiluoto-specific conditions by reactive transport modelling using the CrunchFlow code. The main focus of this modelling exercise was to update the previous modelling study of Wersin et al. (2007). by accounting for new thermodynamic data on clays and uncertainties in precipitation rates of iron reaction products. The modelling strategy was first to select appropriate thermodynamic and kinetic mineral by review of current data, in particular of the THERMODDEM database, and by chemical equilibrium modelling. Second, a 1D reactive transport model which includes a corroding iron source from which solutes can diffuse into the buffer and interact with the clay and accessory minerals was set up in a similar way as that applied in Wersin et al. (2007). A number of test cases were defined, including a Base Case and various less likely as well as bounding cases. The modelling results largely confirmed previous findings in that the zone of alteration was predicted to remain spatially limited for very long times. However, they highlighted that under unfavourable conditions during the initial corrosion phase (before complete corrosion of the shell), pronounced increase in pH might occur, which would lead to enhanced dissolution of the montmorillonite clay. Factors favouring pH increase were found to be slow

  5. Investigation of bacterial transport in the large-block test, a thermally perturbed block of Topopah Spring Tuff

    International Nuclear Information System (INIS)

    This study investigates the transport of bacteria in a large, thermally perturbed block of Topopah Spring tuff. The study was part of the Large-Block Test (LBT), thermochemical and physical studies conducted on a 10 ft x 10 ft x 14 ft block of volcanic tuff excavated on 5 of 6 sides out of Fran Ridge, Nevada. Two bacterial species, Bacillus subtilis and Arthrobacter oxydans, were isolated from the Yucca Mountain tuff. Natural mutants that can grow under the simultaneous presence of the two antibiotics, streptomycin and rifampicin, were selected from these species by laboratory procedures. The double-drug-resistant mutants, which could be thus distinguished from the indigenous species, were injected into the five heater boreholes of the large block hours before heating was initiated. The temperature, as measured 5 cm above one of the heater boreholes, rose slowly and steadily over a matter of months to a maximum of 142 C. Samples (cotton cloths inserted the length of the hole, glass fiber swabs, and filter papers) were collected from the boreholes that were approximately 5 ft below the injection points. Double-drug-resistant bacteria were found in the collection boreholes nine months after injection. Surprisingly, they also appeared in the heater boreholes where the temperature had been sustainably high throughout the test. These bacteria appear to be the species that were injected. The number of double-drug-resistant bacteria that were identified in the collection boreholes increased with time. An apparent homogeneous distribution among the observation boreholes and heater boreholes suggests that a random motion could be the pattern that the bacteria migrated in the block. These observations indicated the possibility of rapid bacterial transport in a thermally perturbed geologic setting

  6. Analysis of Bacterial and Archaeal Communities along a High-Molecular-Weight Polyacrylamide Transportation Pipeline System in an Oil Field

    Directory of Open Access Journals (Sweden)

    Cai-Yun Li

    2015-04-01

    Full Text Available Viscosity loss of high-molecular-weight partially hydrolyzed polyacrylamide (HPAM solution was observed in a water injection pipeline before being injected into subterranean oil wells. In order to investigate the possible involvement of microorganisms in HPAM viscosity loss, both bacterial and archaeal community compositions of four samples collected from different points of the transportation pipeline were analyzed using PCR-amplification of the 16S rRNA gene and clone library construction method together with the analysis of physicochemical properties of HPAM solution and environmental factors. Further, the relationship between environmental factors and HPAM properties with microorganisms were delineated by canonical correspondence analysis (CCA. Diverse bacterial and archaeal groups were detected in the four samples. The microbial community of initial solution S1 gathered from the make-up tank is similar to solution S2 gathered from the first filter, and that of solution S3 obtained between the first and the second filter is similar to that of solution S4 obtained between the second filter and the injection well. Members of the genus Acinetobacter sp. were detected with high abundance in S3 and S4 in which HPAM viscosity was considerably reduced, suggesting that they likely played a considerable role in HPAM viscosity loss. This study presents information on microbial community diversity in the HPAM transportation pipeline and the possible involvement of microorganisms in HPAM viscosity loss and biodegradation. The results will help to understand the microbial community contribution made to viscosity change and are beneficial for providing information for microbial control in oil fields.

  7. Effects of soluble flavin on heterogeneous electron transfer between surface-exposed bacterial cytochromes and iron oxides

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Zheming; Shi, Zhi; Shi, Liang; White, Gaye F.; Richardson, David J.; Clarke, Thomas A.; Fredrickson, Jim K.; Zachara, John M.

    2015-08-25

    Dissimilatory iron-reducing bacteria can utilize insoluble Fe(Mn)-oxides as a terminal electron acceptor under anaerobic conditions. For Shewanella species specifically, some evidence suggests that iron reduction is associated with the secretion of flavin mononucleotide (FMN) and riboflavin that are proposed to mediate electron transfer (Marsili et al., 2008). In this work, we used methyl viologen (MV•+)-encapsulated, porin-cytochrome complex (MtrCAB) embedded liposomes (MELs) as a synthetic model of the Shewanella outer membrane to investigate the proposed mediating behavior of secreted flavins. The reduction kinetics of goethite, hematite and lepidocrocite (200 µM) by MELs ([MV•+] ~ 42 µM and MtrABC ≤ 1 nM) were determined in the presence FMN at pH 7.0 in N2 atmosphere by monitoring the concentrations of MV•+ and FMN through their characteristic UV-visible absorption spectra. Experiments were performed where i) FMN and Fe(III)-oxide were mixed and then reacted with the reduced MELs and ii) FMN was reacted with the reduced MELs followed by addition of Fe(III)-oxide. The redox reactions proceeded in two steps: a fast step that was completed in a few seconds, and a slower one lasting over 400 seconds. For all three Fe(III)-oxides, the initial reaction rate in the presence of a low concentration of FMN (≤ 1 µM) was at least a factor of five faster than those with MELs alone, and orders of magnitude faster than those by FMNH2, suggesting that FMN may serve as a co-factor that enhances electron transfer from outer-membrane c-cytochromes to Fe(III)-oxides. The rate and extent of the initial reaction followed the order of lepidocrocite > hematite > goethite, the same as their reduction potentials, implying thermodynamic control on reaction rate. However, at higher FMN concentrations (> 1 µM), the reaction rates for both steps decreased and varied inversely with FMN concentration, indicating that FMN inhibited the MEL to Fe(III)-oxide electron transfer

  8. Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes

    OpenAIRE

    Thomine, Sébastien; Wang, Rongchen; Ward, John M.; Crawford, Nigel M.; Schroeder, Julian I.

    2000-01-01

    Metal cation homeostasis is essential for plant nutrition and resistance to toxic heavy metals. Many plant metal transporters remain to be identified at the molecular level. In the present study, we have isolated AtNramp cDNAs from Arabidopsis and show that these genes complement the phenotype of a metal uptake deficient yeast strain, smf1. AtNramps show homology to the Nramp gene family in bacteria, yeast, plants, and animals. Expression of AtNramp cDNAs increases Cd2+ sensitivity and Cd2+ a...

  9. Iron Uptake and Transport in Plants: The Good, the Bad, and the Ionome

    Energy Technology Data Exchange (ETDEWEB)

    Morrissey, J.; Guerinot, M

    2009-01-01

    Fe is essential for plant growth. At the same time, Fe is highly reactive and toxic via the Fenton reaction. Consequently, plants tightly control Fe homeostasis and react to Fe deficiency as well as Fe overload. The ability of plants to respond to Fe availability ultimately affects human nutrition, both in terms of crop yield and the Fe concentration of edible tissues. Thus, elucidating the mechanisms of Fe uptake and transport is essential for the breeding of crops that are more nutrient rich and more tolerant of Fe-limited soils.This review covers Fe transport and homeostasis in plants, focusing on the research published in the past five years. Because Fe transporters often have a broad range of substrates, we also examine the relationship between Fe and the toxic metals that often accompany Fe uptake, namely Cd, Co, and Ni. We begin by discussing Fe uptake into the root, then long-distance transport to the shoot, and finally, the loading of Fe into seeds. And, as Fe is essential to the metabolism of the mitochondria and chloroplast, we also look at the recent discoveries in Fe transport and homeostasis at the intracellular level. We do not cover the regulation of these transporters as this topic has been recently reviewed.

  10. Siderophore-Mediated Iron Acquisition Influences Motility and Is Required for Full Virulence of the Xylem-Dwelling Bacterial Phytopathogen Pantoea stewartii subsp. stewartii

    OpenAIRE

    Burbank, Lindsey; Mohammadi, Mojtaba; Roper, M Caroline

    2014-01-01

    Iron is a key micronutrient for microbial growth but is often present in low concentrations or in biologically unavailable forms. Many microorganisms overcome this challenge by producing siderophores, which are ferric-iron chelating compounds that enable the solubilization and acquisition of iron in a bioactive form. Pantoea stewartii subsp. stewartii, the causal agent of Stewart's wilt of sweet corn, produces a siderophore under iron-limiting conditions. The proteins involved in the biosy...

  11. The properties and transport phenomena in oxide films on iron, nickel, chromium and their alloys in aqueous environments

    Energy Technology Data Exchange (ETDEWEB)

    Laitinen, T.; Bojinov, M.; Betova, I.; Maekelae, K.; Saario, T. [VTT Manufacturing Technology, Espoo (Finland)

    1999-01-01

    The construction materials used in coolant systems in nuclear power plants become covered with oxide films as a result of exposure to the aqueous environment. The susceptibility of the materials to different forms of corrosion, as well as the extent of the incorporation of radioactive species on the surfaces of the primary circuit, are greatly influenced by the physical and chemical properties of these oxide films. The composition and characteristics of the oxide films in turn depend on the applied water chemistry. This work was undertaken in order to collect and evaluate the present views on the structure and behaviour of oxide films formed on iron- and nickel-based materials in aqueous environments. This survey should serve to recognise the areas in which more understanding and research effort is needed. The review begins with a discussion on the bulk oxides of iron, nickel and chromium, as well as their mixed oxides. In addition to bulk oxides, the structure and properties of oxide films forming on pure iron, nickel and chromium and on iron- and nickel-based engineering alloys are considered. General approaches to model the structure and growth of oxide films on metals are discussed in detail. The specific features of the oxide structures, properties and growth at high temperatures are presented with special focus on the relevance of existing models. Finally, the role of oxide films in localised corrosion, oxide breakdown pitting. Stress corrosion cracking and related phenomena is considered. The films formed on the surfaces of iron- and nickel-based alloys in high-temperature aqueous environments generally comprise two layers, i.e. the so-called duplex structure. The inner part is normally enriched in chromium and has a more compact structure, while the outer part is enriched in iron and has a cracked or porous structure. The information collected clearly indicates the effect of the chemical environment on the properties of oxide films growing on metal surfaces

  12. The properties and transport phenomena in oxide films on iron, nickel, chromium and their alloys in aqueous environments

    International Nuclear Information System (INIS)

    The construction materials used in coolant systems in nuclear power plants become covered with oxide films as a result of exposure to the aqueous environment. The susceptibility of the materials to different forms of corrosion, as well as the extent of the incorporation of radioactive species on the surfaces of the primary circuit, are greatly influenced by the physical and chemical properties of these oxide films. The composition and characteristics of the oxide films in turn depend on the applied water chemistry. This work was undertaken in order to collect and evaluate the present views on the structure and behaviour of oxide films formed on iron- and nickel-based materials in aqueous environments. This survey should serve to recognise the areas in which more understanding and research effort is needed. The review begins with a discussion on the bulk oxides of iron, nickel and chromium, as well as their mixed oxides. In addition to bulk oxides, the structure and properties of oxide films forming on pure iron, nickel and chromium and on iron- and nickel-based engineering alloys are considered. General approaches to model the structure and growth of oxide films on metals are discussed in detail. The specific features of the oxide structures, properties and growth at high temperatures are presented with special focus on the relevance of existing models. Finally, the role of oxide films in localised corrosion, oxide breakdown pitting. Stress corrosion cracking and related phenomena is considered. The films formed on the surfaces of iron- and nickel-based alloys in high-temperature aqueous environments generally comprise two layers, i.e. the so-called duplex structure. The inner part is normally enriched in chromium and has a more compact structure, while the outer part is enriched in iron and has a cracked or porous structure. The information collected clearly indicates the effect of the chemical environment on the properties of oxide films growing on metal surfaces

  13. Iron content of ferritin modulates its uptake by intestinal epithelium: implications for co-transport of prions

    Directory of Open Access Journals (Sweden)

    Sunkesula Solomon RB

    2010-04-01

    Full Text Available Abstract The spread of Chronic Wasting Disease (CWD in the deer and elk population has caused serious public health concerns due to its potential to infect farm animals and humans. Like other prion disorders such a sporadic Creutzfeldt-Jakob-disease of humans and Mad Cow Disease of cattle, CWD is caused by PrP-scrapie (PrPSc, a β-sheet rich isoform of a normal cell surface glycoprotein, the prion protein (PrPC. Since PrPSc is sufficient to cause infection and neurotoxicity if ingested by a susceptible host, it is important to understand the mechanism by which it crosses the stringent epithelial cell barrier of the small intestine. Possible mechanisms include co-transport with ferritin in ingested food and uptake by dendritic cells. Since ferritin is ubiquitously expressed and shares considerable homology among species, co-transport of PrPSc with ferritin can result in cross-species spread with deleterious consequences. We have used a combination of in vitro and in vivo models of intestinal epithelial cell barrier to understand the role of ferritin in mediating PrPSc uptake and transport. In this report, we demonstrate that PrPSc and ferritin from CWD affected deer and elk brains and scrapie from sheep resist degradation by digestive enzymes, and are transcytosed across a tight monolayer of human epithelial cells with significant efficiency. Likewise, ferritin from hamster brains is taken up by mouse intestinal epithelial cells in vivo, indicating that uptake of ferritin is not limited by species differences as described for prions. More importantly, the iron content of ferritin determines its efficiency of uptake and transport by Caco-2 cells and mouse models, providing insight into the mechanism(s of ferritin and PrPSc uptake by intestinal epithelial cells.

  14. Iron content of ferritin modulates its uptake by intestinal epithelium: implications for co-transport of prions.

    Science.gov (United States)

    Bhupanapadu Sunkesula, Solomon Raju; Luo, Xiu; Das, Dola; Singh, Ajay; Singh, Neena

    2010-01-01

    The spread of Chronic Wasting Disease (CWD) in the deer and elk population has caused serious public health concerns due to its potential to infect farm animals and humans. Like other prion disorders such a sporadic Creutzfeldt-Jakob-disease of humans and Mad Cow Disease of cattle, CWD is caused by PrP-scrapie (PrPSc), a beta-sheet rich isoform of a normal cell surface glycoprotein, the prion protein (PrPC). Since PrPSc is sufficient to cause infection and neurotoxicity if ingested by a susceptible host, it is important to understand the mechanism by which it crosses the stringent epithelial cell barrier of the small intestine. Possible mechanisms include co-transport with ferritin in ingested food and uptake by dendritic cells. Since ferritin is ubiquitously expressed and shares considerable homology among species, co-transport of PrPSc with ferritin can result in cross-species spread with deleterious consequences. We have used a combination of in vitro and in vivo models of intestinal epithelial cell barrier to understand the role of ferritin in mediating PrPSc uptake and transport. In this report, we demonstrate that PrPSc and ferritin from CWD affected deer and elk brains and scrapie from sheep resist degradation by digestive enzymes, and are transcytosed across a tight monolayer of human epithelial cells with significant efficiency. Likewise, ferritin from hamster brains is taken up by mouse intestinal epithelial cells in vivo, indicating that uptake of ferritin is not limited by species differences as described for prions. More importantly, the iron content of ferritin determines its efficiency of uptake and transport by Caco-2 cells and mouse models, providing insight into the mechanism(s) of ferritin and PrPSc uptake by intestinal epithelial cells. PMID:20429907

  15. MavN is a Legionella pneumophila vacuole-associated protein required for efficient iron acquisition during intracellular growth

    Science.gov (United States)

    Isaac, Dervla T.; Laguna, Rita K.; Valtz, Nicole; Isberg, Ralph R.

    2015-01-01

    Iron is essential for the growth and virulence of most intravacuolar pathogens. The mechanisms by which microbes bypass host iron restriction to gain access to this metal across the host vacuolar membrane are poorly characterized. In this work, we identify a unique intracellular iron acquisition strategy used by Legionella pneumophila. The bacterial Icm/Dot (intracellular multiplication/defect in organelle trafficking) type IV secretion system targets the bacterial-derived MavN (more regions allowing vacuolar colocalization N) protein to the surface of the Legionella-containing vacuole where this putative transmembrane protein facilitates intravacuolar iron acquisition. The ΔmavN mutant exhibits a transcriptional iron-starvation signature before its growth is arrested during the very early stages of macrophage infection. This intracellular growth defect is rescued only by the addition of excess exogenous iron to the culture medium and not a variety of other metals. Consistent with MavN being a translocated substrate that plays an exclusive role during intracellular growth, the mutant shows no defect for growth in broth culture, even under severe iron-limiting conditions. Putative iron-binding residues within the MavN protein were identified, and point mutations in these residues resulted in defects specific for intracellular growth that are indistinguishable from the ΔmavN mutant. This model of a bacterial protein inserting into host membranes to mediate iron transport provides a paradigm for how intravacuolar pathogens can use virulence-associated secretion systems to manipulate and acquire host iron. PMID:26330609

  16. The Oligopeptide Permease Opp Mediates Illicit Transport of the Bacterial P-site Decoding Inhibitor GE81112.

    Science.gov (United States)

    Maio, Alessandro; Brandi, Letizia; Donadio, Stefano; Gualerzi, Claudio O

    2016-01-01

    GE81112 is a tetrapeptide antibiotic that binds to the 30S ribosomal subunit and specifically inhibits P-site decoding of the mRNA initiation codon by the fMet-tRNA anticodon. GE81112 displays excellent microbiological activity against some Gram-positive and Gram-negative bacteria in both minimal and complete, chemically defined, broth, but is essentially inactive in complete complex media. This is due to the presence of peptides that compete with the antibiotic for the oligopeptide permease system (Opp) responsible for its illicit transport into the bacterial cells as demonstrated in the cases of Escherichia coli and Bacillus subtilis. Mutations that inactivate the Opp system and confer GE81112 resistance arise spontaneously with a frequency of ca. 1 × 10(-6), similar to that of the mutants resistant to tri-l-ornithine, a known Opp substrate. On the contrary, cells expressing extrachromosomal copies of the opp genes are extremely sensitive to GE81112 in rich medium and GE81112-resistant mutations affecting the molecular target of the antibiotic were not detected upon examining >10⁸ cells of this type. However, some mutations introduced in the 16S rRNA to confer kasugamycin resistance were found to reduce the sensitivity of the cells to GE81112. PMID:27231947

  17. 49 CFR 192.373 - Service lines: Cast iron and ductile iron.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 3 2010-10-01 2010-10-01 false Service lines: Cast iron and ductile iron. 192.373... Regulators, and Service Lines § 192.373 Service lines: Cast iron and ductile iron. (a) Cast or ductile iron... cast iron pipe or ductile iron pipe is installed for use as a service line, the part of the...

  18. Iron, cobalt and gadolinium transport in methanogenic granules measured by 3D magnetic resonance imaging

    Directory of Open Access Journals (Sweden)

    Jan eBartacek

    2016-03-01

    Full Text Available Description of processes such as bioaccumulation, bioavailability and biosorption of heavy metals in biofilm matrixes requires the quantification of their transport. This study shows 3D MRI measurements of the penetration of free (Fe2+, Co2+ and Gd3+ and complexed ([FeEDTA]2- and [GdDTPA]2- metal ions in a single methanogenic granule. Interactions (sorption or precipitation between free metals and the biofilm matrix result in extreme shortening of the spin-spin relaxation time (T2 and a decrease of the amplitude (A0 of the MRI signal, which hampers the quantification of the metal concentration inside the granular sludge matrix. MRI images clearly showed the presence of distinct regions (dead or living biomass, cracks and precipitates in the granular matrix, which influenced the metal transport. For the free metal ions, a reactive barrier was formed that moved through the granule, especially in the case of Gd3+. Chelated metals penetrated faster and without reaction front. Diffusion of [GdDTPA]2- could be quantified, revealing the course of its transport and the uneven (0.2 – 0.4 mmol·L-1 distribution of the final [GdDTPA]2- concentration within the granular biofilm matrix at equilibrium.

  19. Iron and Iron Metabolism

    OpenAIRE

    Melike Sezgin Evim; Birol Baytan; Adalet Meral Güneş

    2012-01-01

    Iron is an essential element for almost all living organisms except some bacteria. A great number of new articles related to the iron metabolism have been published in recent years explaining new findings. Hepsidine, a peptide hormon, that is recently found, regulates iron methabolism by effecting iron absorbsion from gut, secreting iron from hepatic store and flows iron from macrophages. Hepsidin blockes to effluxe iron from cells by bounding to ferroportin and by inducing ferroportin destru...

  20. Phase Stability and Stoichiometry in Thin Film Iron Pyrite: Impact on Electronic Transport Properties.

    Science.gov (United States)

    Zhang, Xin; Scott, Tom; Socha, Tyler; Nielsen, David; Manno, Michael; Johnson, Melissa; Yan, Yuqi; Losovyj, Yaroslav; Dowben, Peter; Aydil, Eray S; Leighton, Chris

    2015-07-01

    The use of pyrite FeS2 as an earth-abundant, low-cost, nontoxic thin film photovoltaic hinges on improved understanding and control of certain physical and chemical properties. Phase stability, phase purity, stoichiometry, and defects, are central in this respect, as they are frequently implicated in poor solar cell performance. Here, phase-pure polycrystalline pyrite FeS2 films, synthesized by ex situ sulfidation, are subject to systematic reduction by vacuum annealing (to 550 °C) to assess phase stability, stoichiometry evolution, and their impact on transport. Bulk probes reveal the onset of pyrrhotite (Fe(1-δ)S) around 400 °C, rapidly evolving into the majority phase by 425 °C. This is supported by X-ray photoelectron spectroscopy on (001) crystals, revealing surface Fe(1-δ)S formation as low as 160 °C, with rapid growth near 400 °C. The impact on transport is dramatic, with Fe(1-δ)S minority phases leading to a crossover from diffusive transport to hopping (due to conductive Fe(1-δ)S nanoregions in an FeS2 matrix), followed by metallicity when Fe(1-δ)S dominates. Notably, the crossover to hopping leads to an inversion of the sign, and a large decrease in magnitude of the Hall coefficient. By tracking resistivity, magnetotransport, magnetization, and structural/chemical parameters vs annealing, we provide a detailed picture of the evolution in properties with stoichiometry. A strong propensity for S-deficient minority phase formation is found, with no wide window where S vacancies control the FeS2 carrier density. These findings have important implications for FeS2 solar cell development, emphasizing the need for (a) nanoscale chemical homogeneity, and (b) caution in interpreting carrier types and densities. PMID:26087015

  1. Porous Iron and Ferric Oxide Pellets for Hydrogen Storage: Texture and Transport Characteristics

    Czech Academy of Sciences Publication Activity Database

    Soukup, Karel; Rogut, J.; Grabowski, J.; Wiatowski, M.; Ludwik-Pardała, M.; Schneider, Petr; Šolcová, Olga

    Atény: WSEAS Press, 2010 - (Mladenov, V.; Psarris, K.; Mastorakis, N.; Caballero, A.; Vachtsevanos, G.), s. 99-103 ISBN 978-960-474-251-6 R&D Projects: GA MŠk(CZ) 7C08033 Grant ostatní: ECR(XE) RFCR-CT-2007-00006 Institutional research plan: CEZ:AV0Z40720504 Keywords : hydrogen storage * transport parameters * inverse gas chromatography Subject RIV: CI - Industrial Chemistry, Chemical Engineering http://www.wseas.us/books/2010/Tenerife/MECHECICON.pdf

  2. Immobilization of bacterial S-layer proteins from Caulobacter crescentus on iron oxide-based nanocomposite: Synthesis and spectroscopic characterization of zincite-coated Fe2O3 nanoparticles

    Science.gov (United States)

    Habibi, Neda

    Zinc oxide was coated on Fe2O3 nanoparticles using sol-gel spin-coating. Caulobacter crescentus have a crystalline surface layer (S-layer), which consist of one protein or glycoprotein species. The immobilization of bacterial S-layers obtained from C. crescentus on zincite-coated nanoparticles of iron oxide was investigated. The SDS PAGE results of S-layers isolated from C. crescentus showed the weight of 50 KDa. Nanoparticles of the Fe2O3 and zinc oxide were synthesized by a sol-gel technique. Fe2O3 nanoparticles with an average size of 50 nm were successfully prepared by the proper deposition of zinc oxide onto iron oxide nanoparticles surface annealed at 450 °C. The samples were characterized by field-emission scanning electron microscope (FESEM), atomic force microscopy (AFM), powder X-ray diffraction (XRD) and Fourier-transform infrared spectroscopy (FT-IR).

  3. Splicing factor SR34b mutation reduces cadmium tolerance in Arabidopsis by regulating iron-regulated transporter 1 gene

    International Nuclear Information System (INIS)

    Highlights: • Arabidopsis splicing factor SR34b gene is cadmium-inducible. • SR34b T-DNA insertion mutant is sensitive to cadmium due to high cadmium uptake. • SR34b is a regulator of cadmium transporter IRT1 at the posttranscription level. • These results highlight the roles of splicing factors in cadmium tolerance of plant. - Abstract: Serine/arginine-rich (SR) proteins are important splicing factors. However, the biological functions of plant SR proteins remain unclear especially in abiotic stresses. Cadmium (Cd) is a non-essential element that negatively affects plant growth and development. In this study, we provided clear evidence for SR gene involved in Cd tolerance in planta. Systemic expression analysis of 17 Arabidopsis SR genes revealed that SR34b is the only SR gene upregulated by Cd, suggesting its potential roles in Arabidopsis Cd tolerance. Consistent with this, a SR34b T-DNA insertion mutant (sr34b) was moderately sensitive to Cd, which had higher Cd2+ uptake rate and accumulated Cd in greater amounts than wild-type. This was due to the altered expression of iron-regulated transporter 1 (IRT1) gene in sr34b mutant. Under normal growth conditions, IRT1 mRNAs highly accumulated in sr34b mutant, which was a result of increased stability of IRT1 mRNA. Under Cd stress, however, sr34b mutant plants had a splicing defect in IRT1 gene, thus reducing the IRT1 mRNA accumulation. Despite of this, sr34b mutant plants still constitutively expressed IRT1 proteins under Cd stress, thereby resulting in Cd stress-sensitive phenotype. We therefore propose the essential roles of SR34b in posttranscriptional regulation of IRT1 expression and identify it as a regulator of Arabidopsis Cd tolerance

  4. Splicing factor SR34b mutation reduces cadmium tolerance in Arabidopsis by regulating iron-regulated transporter 1 gene

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Wentao; Du, Bojing; Liu, Di; Qi, Xiaoting, E-mail: qixiaoting@cnu.edu.cn

    2014-12-12

    Highlights: • Arabidopsis splicing factor SR34b gene is cadmium-inducible. • SR34b T-DNA insertion mutant is sensitive to cadmium due to high cadmium uptake. • SR34b is a regulator of cadmium transporter IRT1 at the posttranscription level. • These results highlight the roles of splicing factors in cadmium tolerance of plant. - Abstract: Serine/arginine-rich (SR) proteins are important splicing factors. However, the biological functions of plant SR proteins remain unclear especially in abiotic stresses. Cadmium (Cd) is a non-essential element that negatively affects plant growth and development. In this study, we provided clear evidence for SR gene involved in Cd tolerance in planta. Systemic expression analysis of 17 Arabidopsis SR genes revealed that SR34b is the only SR gene upregulated by Cd, suggesting its potential roles in Arabidopsis Cd tolerance. Consistent with this, a SR34b T-DNA insertion mutant (sr34b) was moderately sensitive to Cd, which had higher Cd{sup 2+} uptake rate and accumulated Cd in greater amounts than wild-type. This was due to the altered expression of iron-regulated transporter 1 (IRT1) gene in sr34b mutant. Under normal growth conditions, IRT1 mRNAs highly accumulated in sr34b mutant, which was a result of increased stability of IRT1 mRNA. Under Cd stress, however, sr34b mutant plants had a splicing defect in IRT1 gene, thus reducing the IRT1 mRNA accumulation. Despite of this, sr34b mutant plants still constitutively expressed IRT1 proteins under Cd stress, thereby resulting in Cd stress-sensitive phenotype. We therefore propose the essential roles of SR34b in posttranscriptional regulation of IRT1 expression and identify it as a regulator of Arabidopsis Cd tolerance.

  5. The Siderophore Iron Transporter of Candida albicans (Sit1p/Arn1p) Mediates Uptake of Ferrichrome-Type Siderophores and Is Required for Epithelial Invasion

    OpenAIRE

    Heymann, Petra; Gerads, Michaela; Schaller, Martin; Dromer, Francoise; Winkelmann, Günther; Ernst, Joachim F.

    2002-01-01

    The human fungal pathogen Candida albicans contains a close homologue of yeast siderophore transporters, designated Sit1p/Arn1p. We have characterized the function of SIT1 in C. albicans by constructing sit1 deletion strains and testing their virulence and ability to utilize a range of siderophores and other iron complexes. sit1 mutant strains are defective in the uptake of ferrichrome-type siderophores including ferricrocin, ferrichrysin, ferrirubin, coprogen, and triacetylfusarinine C. A mu...

  6. A Molecular Dynamics Study of the Static Structure, Thermodynamic and Transport Properties of Liquid Iron Using the Modified Analytic Embedded Atom Method

    OpenAIRE

    DALGIÇ, Serap Şentürk; KOÇOĞLU, İbrahim

    2006-01-01

    Using the modified analytic embedded atom method (MAEAM), we have carried out molecular dynamics (MD) simulation to compute structure,thermodynamic and transport properties of liquid iron. The Foiles type effective pair potential based on the MAEAM potential functions proposed by Quyang and co-workers are shown to predict the pair distribution function well near its melting. The calculated thermodynamic properties such as, the internal energy, Helmholtz free energy and entropy are in...

  7. Deficiency of Calcium-Independent Phospholipase A2 Beta Induces Brain Iron Accumulation through Upregulation of Divalent Metal Transporter 1

    OpenAIRE

    Goichi Beck; Koei Shinzawa; Hideki Hayakawa; Kousuke Baba; Toru Yasuda; Hisae Sumi-Akamaru; Yoshihide Tsujimoto; Hideki Mochizuki

    2015-01-01

    Mutations in PLA2G6 have been proposed to be the cause of neurodegeneration with brain iron accumulation type 2. The present study aimed to clarify the mechanism underlying brain iron accumulation during the deficiency of calcium-independent phospholipase A2 beta (iPLA2β), which is encoded by the PLA2G6 gene. Perl's staining with diaminobenzidine enhancement was used to visualize brain iron accumulation. Western blotting was used to investigate the expression of molecules involved in iron hom...

  8. Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1

    Directory of Open Access Journals (Sweden)

    Klingeman Dawn M

    2006-04-01

    Full Text Available Abstract Background Shewanella oneidensis MR-1 is a facultative, gram-negative bacterium capable of coupling the oxidation of organic carbon to a wide range of electron acceptors such as oxygen, nitrate and metals, and has potential for bioremediation of heavy metal contaminated sites. The complete 5-Mb genome of S. oneidensis MR-1 was sequenced and standard sequence-comparison methods revealed approximately 42% of the MR-1 genome encodes proteins of unknown function. Defining the functions of hypothetical proteins is a great challenge and may need a systems approach. In this study, by using integrated approaches including whole genomic microarray and proteomics, we examined knockout effects of the gene encoding SO1377 (gi24372955, a member of the conserved, hypothetical, bacterial protein family COG2268 (Clusters of Orthologous Group in bacterium Shewanella oneidensis MR-1, under various physiological conditions. Results Compared with the wild-type strain, growth assays showed that the deletion mutant had a decreased growth rate when cultured aerobically, but not affected under anaerobic conditions. Whole-genome expression (RNA and protein profiles revealed numerous gene and protein expression changes relative to the wild-type control, including some involved in iron metabolism, oxidative damage protection and respiratory electron transfer, e. g. complex IV of the respiration chain. Although total intracellular iron levels remained unchanged, whole-cell electron paramagnetic resonance (EPR demonstrated that the level of free iron in mutant cells was 3 times less than that of the wild-type strain. Siderophore excretion in the mutant also decreased in iron-depleted medium. The mutant was more sensitive to hydrogen peroxide and gave rise to 100 times more colonies resistant to gentamicin or kanamycin. Conclusion Our results showed that the knock-out of SO1377 gene had pleiotropic effects and suggested that SO1377 may play a role in iron

  9. Effect of Magnetospirillum gryphiswaldense on serum iron levels in mice

    Directory of Open Access Journals (Sweden)

    Tahereh Setayesh

    2012-09-01

    Full Text Available Background and Objectives: The Magnetotactic bacteria Magnetospirillum gryphiswaldense (MSR-1 mineralizes the magnetite (Fe3 O4 crystals and organizes a highly ordered intracellular structure, called the magnetosome. Iron transport system supports the biogenesis of magnetite. Although iron is an essential trace element for many metabolic pathways of the body, increase or decrease in iron will cause many diseases. Mice were infected by MSR-1 to study survival of bacteria in mice when injected by different routes. The aim of this study was to investigate whether bacterial magnetite formation could take up Fe2+ ions from the blood an animal model.Materials and Methods: In this study, MSR-1 at a dose lower than LD50 in 200 μl volume of PBS buffer was injected as intravascular (i.v, peritoneal (i.p and subcutaneous (s.c in mice. Number of viable bacterial was determined in organs such as liver, spleen and lymph node by measuring colony-forming unit (CFU. Moreover, serum iron level was evaluated by using commercial kits.Results and Conclusion: According to CFU measurements, after 96 hours, mice can clear MSR-1 from their body with different routes of injection. We have also shown that MSR-1 bacteria can affect the blood iron level in mice. The serum iron level decreased from control level in the first 24 h after i.v injection (P < 0.05. Our research on optimizing the biological magnetic system is still continuing.

  10. Genetics Home Reference: African iron overload

    Science.gov (United States)

    ... shedding of excess iron through blood loss in menstruation and childbirth. The prevalence of increased iron stores ... is absorbed through the walls of the small intestine. Ferroportin then transports iron from the small intestine ...

  11. Intestinal Iron Homeostasis and Colon Tumorigenesis

    Directory of Open Access Journals (Sweden)

    Yatrik M. Shah

    2013-06-01

    Full Text Available Colorectal cancer (CRC is the third most common cause of cancer-related deaths in industrialized countries. Understanding the mechanisms of growth and progression of CRC is essential to improve treatment. Iron is an essential nutrient for cell growth. Iron overload caused by hereditary mutations or excess dietary iron uptake has been identified as a risk factor for CRC. Intestinal iron is tightly controlled by iron transporters that are responsible for iron uptake, distribution, and export. Dysregulation of intestinal iron transporters are observed in CRC and lead to iron accumulation in tumors. Intratumoral iron results in oxidative stress, lipid peroxidation, protein modification and DNA damage with consequent promotion of oncogene activation. In addition, excess iron in intestinal tumors may lead to increase in tumor-elicited inflammation and tumor growth. Limiting intratumoral iron through specifically chelating excess intestinal iron or modulating activities of iron transporter may be an attractive therapeutic target for CRC.

  12. Bacterial gastroenteritis

    Science.gov (United States)

    Infectious diarrhea - bacterial gastroenteritis; Acute gastroenteritis; Gastroenteritis - bacterial ... Bacterial gastroenteritis can affect 1 person or a group of people who all ate the same food. It is ...

  13. Transport and retention of xanthan gum-stabilized microscale zero-valent iron particles in saturated porous media.

    Science.gov (United States)

    Xin, Jia; Tang, Fenglin; Zheng, Xilai; Shao, Haibing; Kolditz, Olaf

    2016-01-01

    Microscale zero valent iron (mZVI) is a promising material for in-situ contaminated groundwater remediation. However, its usefulness has been usually inhibited by mZVI particles' low mobility in saturated porous media for sedimentation and deposition. In our study, laboratory experiments, including sedimentation studies, rheological measurements and transport tests, were conducted to investigate the feasibility of xanthan gum (XG) being used as a coating agent for mZVI particle stabilization. In addition, the effects of XG concentration, flow rate, grain diameter and water chemistry on XG-coated mZVI (XG-mZVI) particle mobility were explored by analyzing its breakthrough curves and retention profiles. It was demonstrated that XG worked efficiently to enhance the suspension stability and mobility of mZVI particles through the porous media as a shear thinning fluid, especially at a higher concentration level (3 g/L). The results of the column study showed that the mobility of XG-mZVI particles increased with an increasing flow rate and larger grain diameter. At the highest flow rate (2.30 × 10(-3) m/s) within the coarsest porous media (0.8-1.2 mm), 86.52% of the XG-mZVI flowed through the column. At the lowest flow rate (0.97 × 10(-4) m/s) within the finest porous media (0.3-0.6 mm), the retention was dramatically strengthened, with only 48.22% of the particles flowing through the column. The XG-mZVI particles appeared to be easily trapped at the beginning of the column especially at a low flow rate. In terms of two representative water chemistry parameters (ion strength and pH value), no significant influence on XG-mZVI particle mobility was observed. The experimental results suggested that straining was the primary mechanism of XG-mZVI retention under saturated condition. Given the above results, the specific site-related conditions should be taken into consideration for the design of a successful delivery system to achieve a compromise between

  14. Hepcidin: an emerging biomarker for iron disorders, inflammatory diseases, and infections

    Science.gov (United States)

    Westerman, Mark E.; Olbina, Gordana; Ostland, Vaughn E.; Nemeth, Elizabeta; Ganz, Tomas

    2010-04-01

    The peptide hormone hepcidin, has emerged as the master regulator of iron homeostasis. Dysregulation of hepcidin is a principal or contributing factor in most genetic and acquired systemic iron disorders, including anemia of inflammation (anemia of chronic disease). Hepcidin maintains healthy blood iron levels by regulating dietary iron absorption and transport from body iron stores to plasma. High serum hepcidin levels observed in chronic and acute inflammatory conditions can cause anemia by limiting plasma iron available for erythropoiesis. Chronically low serum hepcidin levels cause iron-overload and ultimately, accumulation of iron in liver and heart. We recently validated the first immunoassay for serum hepcidin and established the normal ranges in adults. Hepcidin has excellent potential as a biomarker and has a known mechanism of action, good stability, and rapid response to iron stores, inflammatory stimuli, and bacterial infections. Hepcidin can be measured in blood, urine, and saliva, and is generally not measurable in iron deficient/anemic patients and highly elevated in inflammatory diseases and infections. Intrinsic LifeSciences (ILS) is developing second generation hepcidin immunoassays and lateral-flow POC devices for hepcidin, a well characterized multi-purpose biomarker with applications in global health security.

  15. Magnetic resonance imaging reveals detailed spatial and temporal distribution of iron-based nanoparticles transported through water-saturated porous media

    Science.gov (United States)

    Cuny, Laure; Herrling, Maria Pia; Guthausen, Gisela; Horn, Harald; Delay, Markus

    2015-11-01

    The application of engineered nanoparticles (ENP) such as iron-based ENP in environmental systems or in the human body inevitably raises the question of their mobility. This also includes aspects of product optimization and assessment of their environmental fate. Therefore, the key aim was to investigate the mobility of iron-based ENP in water-saturated porous media. Laboratory-scale transport experiments were conducted using columns packed with quartz sand as model solid phase. Different superparamagnetic iron oxide nanoparticles (SPION) were selected to study the influence of primary particle size (dP = 20 nm and 80 nm) and surface functionalization (plain, -COOH and -NH2 groups) on particle mobility. In particular, the influence of natural organic matter (NOM) on the transport and retention behaviour of SPION was investigated. In our approach, a combination of conventional breakthrough curve (BTC) analysis and magnetic resonance imaging (MRI) to non-invasively and non-destructively visualize the SPION inside the column was applied. Particle surface properties (surface functionalization and resulting zeta potential) had a major influence while their primary particle size turned out to be less relevant. In particular, the mobility of SPION was significantly increased in the presence of NOM due to the sorption of NOM onto the particle surface resulting in a more negative zeta potential. MRI provided detailed spatially resolved information complementary to the quantitative BTC results. The approach can be transferred to other porous systems and contributes to a better understanding of particle transport in environmental porous media and porous media in technical applications.

  16. Nitrogen and Phosphorus Removal from Wastewater Treatment Plant Effluent via Bacterial Sulfate Reduction in an Anoxic Bioreactor Packed with Wood and Iron

    Directory of Open Access Journals (Sweden)

    Takahiro Yamashita

    2014-09-01

    Full Text Available We investigated the removal of nitrogen and phosphate from the effluent of a sewage treatment plant over a long-term operation in bioreactors packed with different combinations of wood and iron, with a trickling filter packed with foam ceramics for nitrification. The average nitrification rate in the trickling filter was 0.17 kg N/m3∙day and remained at 0.11 kg N/m3∙day even when the water temperature was below 15 °C. The denitrification and phosphate removal rates in the bioreactor packed with aspen wood and iron were higher than those in the bioreactor packed with cedar chips and iron. The bioreactor packed with aspen wood and iron continued to remove nitrate and phosphate for >1200 days of operation. The nitrate removal activity of a biofilm attached to the aspen wood from the bioreactor after 784 days of operation was 0.42 g NO3-N/kg dry weight wood∙ day. There was no increase in the amount of dissolved organic matter in the outflow from the bioreactors.

  17. Two Isoforms of a Divalent Metal Transporter (DMT1) in Schistosoma mansoni Suggest a Surface-associated Pathway for Iron Absorption in Schistosomes*

    OpenAIRE

    Smyth, Danielle J.; Glanfield, Amber; McManus, Donald P; Hacker, Elke; Blair, David; Anderson, Greg J.; Jones, Malcolm K.

    2005-01-01

    We describe two homologues of the mammalian divalent metal transporter (DMT1) for Schistosoma mansoni, a pathogenic intravascular parasite of humans. Schistosomes have a high nutritional and metabolic demand for iron. Nucleotide sequences of the parasite homologues, designated SmDMT1A and -B, are identical in all but the 5′-regions. The predicted amino acid sequences share at least 60% identity with DMT1 (=Nramp2) of humans, mice, and rats, and at least 55% identity with Nramp1 from mice, hum...

  18. Homologs of the Acinetobacter baumannii AceI Transporter Represent a New Family of Bacterial Multidrug Efflux Systems

    OpenAIRE

    Hassan, Karl A.; Liu, Qi; Henderson, Peter J. F.; Paulsen, Ian T

    2015-01-01

    ABSTRACT Multidrug efflux systems are a major cause of resistance to antimicrobials in bacteria, including those pathogenic to humans, animals, and plants. These proteins are ubiquitous in these pathogens, and five families of bacterial multidrug efflux systems have been identified to date. By using transcriptomic and biochemical analyses, we recently identified the novel AceI (Acinetobacter chlorhexidine efflux) protein from Acinetobacter baumannii that conferred resistance to the biocide ch...

  19. Poly-N-Acetylglucosamine Matrix Polysaccharide Impedes Fluid Convection and Transport of the Cationic Surfactant Cetylpyridinium Chloride through Bacterial Biofilms▿

    OpenAIRE

    Ganeshnarayan, Krishnaraj; Shah, Suhagi M.; Libera, Matthew R.; Santostefano, Anthony; Kaplan, Jeffrey B.

    2008-01-01

    Biofilms are composed of bacterial cells encased in a self-synthesized, extracellular polymeric matrix. Poly-β(1,6)-N-acetyl-d-glucosamine (PNAG) is a major biofilm matrix component in phylogenetically diverse bacteria. In this study we investigated the physical and chemical properties of the PNAG matrix in biofilms produced in vitro by the gram-negative porcine respiratory pathogen Actinobacillus pleuropneumoniae and the gram-positive device-associated pathogen Staphylococcus epidermidis. Th...

  20. Spray washing, absorbent cornstarch powder, and dry time to reduce bacterial numbers on soiled transport cage flooring

    Science.gov (United States)

    Broiler transport cages are often used repeatedly without washing and fecal matter deposited on the floor surface can transfer Campylobacter from one flock to another. Allowing feces to dry is an effective but slow and logistically impractical means to kill Campylobacter in soiled transport cages. ...

  1. Iron toxicity in yeast.

    Science.gov (United States)

    Wiśnicka, R; Krzepiłko, A; Wawryn, J; Biliński, T

    1997-01-01

    It has been found that yeast cells are sensitive to iron overload only when grown on glucose as a carbon source. Effective concentration of ferrous iron is much higher than that found in natural environments. Effects of ferrous iron are strictly oxygen dependent, what suggest that the formation of hydroxyl radicals in the Fenton reaction is a cause of the toxicity. Respiratory deficiency and pretreatment of cells with antimycin A prevent toxic effects in the late exponential phase of growth, whereas uncouplers and 2mM magnesium salts completely protect even the most vulnerable exponential cells. Generally, toxic effects correlate with the ability of cells to take up this metal. The results presented suggest that during ferrous iron overload iron is transported through the unspecific divalent cation uptake system which is known in fungi. The data suggest that recently described high and low affinity systems of iron uptake in yeast are the only source of iron in natural environments. PMID:9516981

  2. Aquifer Thermal Energy Storage as an ecosystem service for Brussels, Belgium: investigating iron (hydr)oxide precipitation with reactive transport modeling

    Science.gov (United States)

    Anibas, Christian; Possemiers, Mathias; Huysmans, Marijke

    2016-04-01

    In an evolving energy system it is important that urbanized areas contribute to their own energy demands. To reduce greenhouse gas emissions sustainable energy systems with a high efficiency are required, e.g. using urban aquifers as an ecosystem service. Here the potential of seasonal aquifer thermal energy storage and recovery (ATES) for the Brussels-Capital Region, Belgium is investigated. An important shallow geologic formation in the Brussels Capital Region is the Brussels Sand formation, a 20-60 m thick phreatic aquifer. The Brussels Sand Formation is known for its potential for ATES systems, but also for its varying redox and hydraulic conditions. Important limiting factors for ATES systems in the Brussels Sand Formation therefore are the hydraulic conductivity and the geochemical composition of the groundwater. Near the redox boundary iron hydroxide precipitation can negatively influence ATES well performance due to clogging. The interactions between physical processes (e.g. particle transport and clogging in the wider proximity of the ATES well) and chemical processes (e.g. influence of the operation temperatures on precipitation processes) during ATES operation are complex but not well understood. Therefore we constructed numerical groundwater flow models in MODFLOW to estimate maximum pumping and injection rates of different hydraulic conditions and competing water uses in the Brussels Sand Formation. In further steps the thermal potential for ATES was quantified using MT3DMS and the reactive transport model PHT3D was applied to assess the effects of operating ATES systems near the redox boundary. Results show that initial mixing plays an important role in the development of iron(hydr)oxide precipitation around the ATES wells, with the highest concentrations around the cold wells. This behavior is enhanced by the temperature effect; temperature differences of ΔT≈10°C already influence the iron (hydr)oxide concentration. The initial injection into the

  3. Route and Regulation of Zinc, Cadmium, and Iron Transport in Rice Plants (Oryza sativa L.) during Vegetative Growth and Grain Filling: Metal Transporters, Metal Speciation, Grain Cd Reduction and Zn and Fe Biofortification.

    Science.gov (United States)

    Yoneyama, Tadakatsu; Ishikawa, Satoru; Fujimaki, Shu

    2015-01-01

    Zinc (Zn) and iron (Fe) are essential but are sometimes deficient in humans, while cadmium (Cd) is toxic if it accumulates in the liver and kidneys at high levels. All three are contained in the grains of rice, a staple cereal. Zn and Fe concentrations in rice grains harvested under different levels of soil/hydroponic metals are known to change only within a small range, while Cd concentrations show greater changes. To clarify the mechanisms underlying such different metal contents, we synthesized information on the routes of metal transport and accumulation in rice plants by examining metal speciation, metal transporters, and the xylem-to-phloem transport system. At grain-filling, Zn and Cd ascending in xylem sap are transferred to the phloem by the xylem-to-phloem transport system operating at stem nodes. Grain Fe is largely derived from the leaves by remobilization. Zn and Fe concentrations in phloem-sap and grains are regulated within a small range, while Cd concentrations vary depending on xylem supply. Transgenic techniques to increase concentrations of the metal chelators (nicotianamine, 2'-deoxymugineic acid) are useful in increasing grain Zn and Fe concentrations. The elimination of OsNRAMP5 Cd-uptake transporter and the enhancement of root cell vacuolar Cd sequestration reduce uptake and root-to-shoot transport, respectively, resulting in a reduction of grain Cd accumulation. PMID:26287170

  4. Route and Regulation of Zinc, Cadmium, and Iron Transport in Rice Plants (Oryza sativa L. during Vegetative Growth and Grain Filling: Metal Transporters, Metal Speciation, Grain Cd Reduction and Zn and Fe Biofortification

    Directory of Open Access Journals (Sweden)

    Tadakatsu Yoneyama

    2015-08-01

    Full Text Available Zinc (Zn and iron (Fe are essential but are sometimes deficient in humans, while cadmium (Cd is toxic if it accumulates in the liver and kidneys at high levels. All three are contained in the grains of rice, a staple cereal. Zn and Fe concentrations in rice grains harvested under different levels of soil/hydroponic metals are known to change only within a small range, while Cd concentrations show greater changes. To clarify the mechanisms underlying such different metal contents, we synthesized information on the routes of metal transport and accumulation in rice plants by examining metal speciation, metal transporters, and the xylem-to-phloem transport system. At grain-filling, Zn and Cd ascending in xylem sap are transferred to the phloem by the xylem-to-phloem transport system operating at stem nodes. Grain Fe is largely derived from the leaves by remobilization. Zn and Fe concentrations in phloem-sap and grains are regulated within a small range, while Cd concentrations vary depending on xylem supply. Transgenic techniques to increase concentrations of the metal chelators (nicotianamine, 2′-deoxymugineic acid are useful in increasing grain Zn and Fe concentrations. The elimination of OsNRAMP5 Cd-uptake transporter and the enhancement of root cell vacuolar Cd sequestration reduce uptake and root-to-shoot transport, respectively, resulting in a reduction of grain Cd accumulation.

  5. Divalent metal transporter 1 regulates iron-mediated ROS and pancreatic ß cell fate in response to cytokines

    DEFF Research Database (Denmark)

    Hansen, Jakob Bondo; Tonnesen, Morten Fog; Madsen, Andreas Nygaard; Hagedorn, Peter; Friberg, Josefine; Grunnet, Lars Groth; Heller, R Scott; Nielsen, Anja Østergren; Størling, Joachim; Baeyens, Luc; Anker-Kitai, Leeat; Qvortrup, Klaus; Bouwens, Luc; Efrat, Shimon; Aalund, Mogens; Andrews, Nancy C; Billestrup, Nils; Karlsen, Allan E; Holst, Birgitte; Pociot, Flemming; Mandrup-Poulsen, Thomas

    2012-01-01

    knockout islets is defective, highlighting a physiological role of iron and ROS in the regulation of insulin secretion. Dmt1 knockout mice are protected against multiple low-dose streptozotocin and high-fat diet-induced glucose intolerance, models of type 1 and type 2 diabetes, respectively. Thus, ß cells...

  6. Protein secretion by hybrid bacterial ABC-transporters: specific functions of the membrane ATPase and the membrane fusion protein.

    OpenAIRE

    Binet, R; Wandersman, C

    1995-01-01

    The Erwinia chrysanthemi metalloprotease C and the Serratia marcescens haem acquisition protein HasA are both secreted from Gram-negative bacteria by a signal peptide-independent pathway which requires a C-terminal secretion signal and a specific ABC-transporter made up of three proteins: a membrane ATPase (the ABC-protein), a second inner membrane component belonging to the membrane fusion protein family and an outer membrane polypeptide. HasA and protease C transporters are homologous altho...

  7. A field investigation on transport of carbon-supported nanoscale zero-valent iron (nZVI) in groundwater.

    Science.gov (United States)

    Busch, J; Meißner, T; Potthoff, A; Bleyl, S; Georgi, A; Mackenzie, K; Trabitzsch, R; Werban, U; Oswald, S E

    2015-10-01

    The application of nanoscale zero-valent iron (nZVI) for subsurface remediation of groundwater contaminants is a promising new technology, which can be understood as alternative to the permeable reactive barrier technique using granular iron. Dechlorination of organic contaminants by zero-valent iron seems promising. Currently, one limitation to widespread deployment is the fast agglomeration and sedimentation of nZVI in colloidal suspensions, even more so when in soils and sediments, which limits the applicability for the treatment of sources and plumes of contamination. Colloid-supported nZVI shows promising characteristics to overcome these limitations. Mobility of Carbo-Iron Colloids (CIC) - a newly developed composite material based on finely ground activated carbon as a carrier for nZVI - was tested in a field application: In this study, a horizontal dipole flow field was established between two wells separated by 5.3m in a confined, natural aquifer. The injection/extraction rate was 500L/h. Approximately 1.2kg of CIC was suspended with the polyanionic stabilizer carboxymethyl cellulose. The suspension was introduced into the aquifer at the injection well. Breakthrough of CIC was observed visually and based on total particle and iron concentrations detected in samples from the extraction well. Filtration of water samples revealed a particle breakthrough of about 12% of the amount introduced. This demonstrates high mobility of CIC particles and we suggest that nZVI carried on CIC can be used for contaminant plume remediation by in-situ formation of reactive barriers. PMID:25864966

  8. Can varying velocity conditions be one possible explanation for differences between laboratory and field observations of bacterial transport in porous media?

    Science.gov (United States)

    Liu, P. C.; Mailloux, B. J.; Wagner, A.; Magyar, J. S.; Culligan, P. J.

    2016-02-01

    Laboratory column experimental results are frequently used to estimate field-scale, fecal bacterial transport distances. However, it is not uncommon for fecal bacteria to be observed at greater distances than predicted by up-scaling laboratory results. Fluctuating or varying velocity conditions is one complex in-situ condition that might account for such inaccurate prediction, yet it is often neglected in laboratory column experiments. In this study, one-dimensional, laboratory column experiments were performed under both constant and varying velocity conditions using 2 μm microspheres and 100 μm glass beads to simulate bacterial transport in saturated porous media. Particle breakthrough curves and particle concentrations retained in the column at the end of an experiment were obtained for five constant and three varying velocity conditions. The range of constant velocities investigated was between 3.17 m/day and 27.65 m/day. For varying velocity conditions, the velocity was steadily increased and/or decreased over the period of the experiment within the same range. Results from the constant velocity experiments were successfully modeled using first order, irreversible particle attachment kinetics. The irreversible attachment coefficients obtained from the constant velocity experiments were used to derive a power function relationship between a dimensionless irreversible attachment coefficient, Ki* and velocity, v. This relationship was then used to model the varying velocity experiments, with limited success (NRMSE > 10% for all model fits). A comparison of Ki* values obtained from direct fitting of the varying velocity tests, with the Ki* values derived from the results of the constant velocity experiments, revealed a potential dependence of Ki* on the rate of change of velocity. Observed particle breakthrough curves (BTCs) for the varying velocity experiments were also modeled using a constant value of Ki* based on the average velocity of each experiment. The

  9. Radiolabeled iron in soybeans: intrinsic labeling and bioavailability of iron to rats from defatted flour

    International Nuclear Information System (INIS)

    Soybeans can be efficiently labeled with radiolabeled iron by supplying the iron via a nutrient culture medium as an iron salt or as a chelate. By using dual labeled iron and EDTA, it was determined that none of the chelator was transported to the shoots with the iron. Therefore, the use of chelated iron as the iron source in the nutrient medium should not affect assessments of bioavailability of iron from plants. Bioavailability (determined from whole-body retention curves of 59Fe in rats) of iron from defatted soy flour was relatively high and addition of vitamin C did not significantly enhance absorption of iron from defatted soy flour

  10. Analysis for the presence of determinants involved in the transport of mercury across bacterial membrane from polluted water bodies of India.

    Science.gov (United States)

    Jan, Arif Tasleem; Azam, Mudsser; Choi, Inho; Ali, Arif; Haq, Qazi Mohd Rizwanul

    2016-01-01

    Mercury, which is ubiquitous and recalcitrant to biodegradation processes, threatens human health by escaping to the environment via various natural and anthropogenic activities. Non-biodegradability of mercury pollutants has necessitated the development and implementation of economic alternatives with promising potential to remove metals from the environment. Enhancement of microbial based remediation strategies through genetic engineering approaches provides one such alternative with a promising future. In this study, bacterial isolates inhabiting polluted sites were screened for tolerance to varying concentrations of mercuric chloride. Following identification, several Pseudomonas and Klebsiella species were found to exhibit the highest tolerance to both organic and inorganic mercury. Screened bacterial isolates were examined for their genetic make-up in terms of the presence of genes (merP and merT) involved in the transport of mercury across the membrane either alone or in combination to deal with the toxic mercury. Gene sequence analysis revealed that the merP gene showed 86-99% homology, while the merT gene showed >98% homology with previously reported sequences. By exploring the genes involved in imparting metal resistance to bacteria, this study will serve to highlight the credentials that are particularly advantageous for their practical application to remediation of mercury from the environment. PMID:26887227

  11. Analysis for the presence of determinants involved in the transport of mercury across bacterial membrane from polluted water bodies of India

    Science.gov (United States)

    Jan, Arif Tasleem; Azam, Mudsser; Choi, Inho; Ali, Arif; Haq, Qazi Mohd. Rizwanul

    2016-01-01

    Mercury, which is ubiquitous and recalcitrant to biodegradation processes, threatens human health by escaping to the environment via various natural and anthropogenic activities. Non-biodegradability of mercury pollutants has necessitated the development and implementation of economic alternatives with promising potential to remove metals from the environment. Enhancement of microbial based remediation strategies through genetic engineering approaches provides one such alternative with a promising future. In this study, bacterial isolates inhabiting polluted sites were screened for tolerance to varying concentrations of mercuric chloride. Following identification, several Pseudomonas and Klebsiella species were found to exhibit the highest tolerance to both organic and inorganic mercury. Screened bacterial isolates were examined for their genetic make-up in terms of the presence of genes (merP and merT) involved in the transport of mercury across the membrane either alone or in combination to deal with the toxic mercury. Gene sequence analysis revealed that the merP gene showed 86–99% homology, while the merT gene showed >98% homology with previously reported sequences. By exploring the genes involved in imparting metal resistance to bacteria, this study will serve to highlight the credentials that are particularly advantageous for their practical application to remediation of mercury from the environment. PMID:26887227

  12. Simultaneous Transport of Two Bacterial Strains in Intact Cores from Oyster, Virginia: Biological Effects and Numerical Modeling

    OpenAIRE

    Dong, Hailiang; Rothmel, Randi; Onstott, Tullis C.; Fuller, Mark E.; DeFlaun, Mary F.; Streger, Sheryl H.; Dunlap, Robb; Fletcher, Madilyn

    2002-01-01

    The transport characteristics of two adhesion-deficient, indigenous groundwater strains, Comamonas sp. strain DA001 and Erwinia herbicola OYS2-A, were studied by using intact sediment cores (7 by 50 cm) from Oyster, Va. Both strains are gram-negative rods (1.10 by 0.56 and 1.56 by 0.46 μm, respectively) with strongly hydrophilic membranes and a slightly negative surface charge. The two strains exhibited markedly different behaviors when they were transported through granular porous sediment. ...

  13. 49 CFR 192.277 - Ductile iron pipe.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 3 2010-10-01 2010-10-01 false Ductile iron pipe. 192.277 Section 192.277 Transportation Other Regulations Relating to Transportation (Continued) PIPELINE AND HAZARDOUS MATERIALS SAFETY... Ductile iron pipe. (a) Ductile iron pipe may not be joined by threaded joints. (b) Ductile iron pipe...

  14. Organic matter iron and nutrient transport and nature of dissolved organic matter in the drainage basin of a boreal humic river in northern Finland

    International Nuclear Information System (INIS)

    Organic carbon and iron transport into the Gulf of Bothnia and the seasonal changes in the nature of dissolved organic matter (DOM) were studied in 1983 and 1984 at the mouth of the River Kiiminkijoki, which crosses an area of minerotrophic mires in northern Finland. Organic and inorganic transport within the drainage basin was studied in the summer and autumn of 1985 and 1986. The results indicate that the dissolved organic carbon (DOC) is mainly of terrestrial origin, leaching mostly from peatlands. The DOC concentrations decrease under low flow conditions. The proportion of drifting algae as a particulate organic carbon (POC) source seems to increase in summer. The changes in the ratio of Fe/DOC, the colour of the DOM and the ratio of Fe/DOC, the colour of the DOM and the ratio of fluorescence to DOC with discharge give indications of the origin, formation, nature and fate of the DOM in the river water. Temperature-dependent microbiological processes in the formation and sedimentation of Fe-organic colloids seem to be important. Estimates are given for the amounts and transport rates of organic carbon and Fe discharged into the Gulf of Bothnia by river. High apparent molecular weight (HAMW) organic colloids are important for the organic, Fe and P transport in the basin. The DOM in the water consists mainly of fulvic acids, although humic acids are also important. The results indicate an increase in the mobilization of HAMW Fe-organic colloids in the peatlands following drainage and peat mining. The transport of inorganic nitrogen from the peatlands in the area and in the river is increasing due to peat mining. The changes in the transport of organic matter, Fe and P are less marked

  15. Quantitative analysis of dietary iron utilization for erythropoiesis in response to body iron status.

    Science.gov (United States)

    Matsuo-Tezuka, Yukari; Noguchi-Sasaki, Mariko; Kurasawa, Mitsue; Yorozu, Keigo; Shimonaka, Yasushi

    2016-06-01

    Erythropoiesis requires large amounts of iron for hemoglobin synthesis. There are two sources of iron for erythropoiesis, dietary and stored iron; however, their relative contributions to erythropoiesis remain unknown. In this study, we used the stable iron isotope (57)Fe to quantify synthesis of hemoglobin derived from dietary iron. Using this method, we investigated the activities of dietary iron absorption and the utilization of dietary iron for erythropoiesis in responses to stimulated erythropoiesis and to interventions to alter body iron status. Under iron-loaded conditions, the activity of dietary iron absorption was clearly lowered in response to up-regulation of hepcidin, although the estimated activity of iron release from stored iron was not compared with that under control conditions. This result was supported by the observation that two duodenal iron transporters, divalent metal transporter 1 (DMT1) and ferroportin, were downregulated by iron loading, although the levels of expression of ferroportin in iron storage tissues were not changed by iron loading under erythropoietic stimulation by epoetin-β pegol (C.E.R.A., a long-acting erythropoiesis-stimulating agent). These results indicate that the dietary iron absorption system is more sensitive to body iron status than are reticuloendothelial iron- release mechanisms. Our data indicated that there could be a regulatory mechanism favoring use of stored iron over dietary iron under iron-loaded conditions. PMID:26911670

  16. Spray washing, absorbent corn starch powder and dry time to reduce bacterial numbers on soiled boiler transport cage flooring

    Science.gov (United States)

    Most broilers in the U.S. are transported live to slaughter facilities in cages with fiberglass floors. Cages are often used repeatedly without washing and fecal matter deposited on the floor surface can transfer Campylobacter from one flock to another. Drying feces out between uses is an effectiv...

  17. 49 CFR 192.369 - Service lines: Connections to cast iron or ductile iron mains.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 3 2010-10-01 2010-10-01 false Service lines: Connections to cast iron or ductile iron mains. 192.369 Section 192.369 Transportation Other Regulations Relating to Transportation... Customer Meters, Service Regulators, and Service Lines § 192.369 Service lines: Connections to cast iron...

  18. Differential Regulation of Ferritin Subunits and Iron Transport Proteins: An Effect of Targeted Hepatic X-Irradiation

    OpenAIRE

    Naila Naz; Shakil Ahmad; Silke Cameron; Federico Moriconi; Margret Rave-Fränk; Hans Christiansen; Clemens Friedrich Hess; Giuliano Ramadori; Malik, Ihtzaz A.

    2013-01-01

    The current study aimed to investigate radiation-induced regulation of iron proteins including ferritin subunits in rats. Rat livers were selectively irradiated in vivo at 25 Gy. This dose can be used to model radiation effects to the liver without inducing overt radiation-induced liver disease. Sham-irradiated rats served as controls. Isolated hepatocytes were irradiated at 8 Gy. Ferritin light polypeptide (FTL) was detectable in the serum of sham-irradiated rats with an increase after irrad...

  19. Stabilisation of nanoscale zero-valent iron with biochar for enhanced transport and in-situ remediation of hexavalent chromium in soil.

    Science.gov (United States)

    Su, Huijie; Fang, Zhanqiang; Tsang, Pokeung Eric; Fang, Jianzhang; Zhao, Dongye

    2016-07-01

    In this study, a biochar-supported nanoscale zero-valent iron (nZVI@BC) material was used for in situ remediation of hexavalent chromium-contaminated soil. Sedimentation tests and column experiments were used to compare the stability and mobility of nZVI@BC and bare-nZVI. The immobilisation efficiency of chromium, toxic effect of chromium and the content of iron were assessed through leaching tests and pot experiments. Sedimentation tests and transport experiments indicated that nZVI@BC with nZVI to BC mass ratio of 1:1 exhibited better stability and mobility than that of bare-nZVI. The immobilisation efficiency of Cr(VI) and Crtotal was 100% and 92.9%, respectively, when the soil was treated with 8 g/kg of nZVI@BC for 15 days. Moreover, such remediation effectively reduced the leachability of Fe caused by bare-nZVI. In addition, pot experiments showed that such remediation reduced the phytotoxicity of Cr and the leachable Fe and was favourable for plant growth. PMID:27064615

  20. Efficiency of vanilla, patchouli and ylang ylang essential oils stabilized by iron oxide@C14 nanostructures against bacterial adherence and biofilms formed by Staphylococcus aureus and Klebsiella pneumoniae clinical strains.

    Science.gov (United States)

    Bilcu, Maxim; Grumezescu, Alexandru Mihai; Oprea, Alexandra Elena; Popescu, Roxana Cristina; Mogoșanu, George Dan; Hristu, Radu; Stanciu, George A; Mihailescu, Dan Florin; Lazar, Veronica; Bezirtzoglou, Eugenia; Chifiriuc, Mariana Carmen

    2014-01-01

    Biofilms formed by bacterial cells are associated with drastically enhanced resistance against most antimicrobial agents, contributing to the persistence and chronicization of the microbial infections and to therapy failure. The purpose of this study was to combine the unique properties of magnetic nanoparticles with the antimicrobial activity of three essential oils to obtain novel nanobiosystems that could be used as coatings for catheter pieces with an improved resistance to Staphylococcus aureus and Klebsiella pneumoniae clinical strains adherence and biofilm development. The essential oils of ylang ylang, patchouli and vanilla were stabilized by the interaction with iron oxide@C14 nanoparticles to be further used as coating agents for medical surfaces. Iron oxide@C14 was prepared by co-precipitation of Fe+2 and Fe+3 and myristic acid (C14) in basic medium. Vanilla essential oil loaded nanoparticles pelliculised on the catheter samples surface strongly inhibited both the initial adherence of S. aureus cells (quantified at 24 h) and the development of the mature biofilm quantified at 48 h. Patchouli and ylang-ylang essential oils inhibited mostly the initial adherence phase of S. aureus biofilm development. In the case of K. pneumoniae, all tested nanosystems exhibited similar efficiency, being active mostly against the adherence K. pneumoniae cells to the tested catheter specimens. The new nanobiosystems based on vanilla, patchouli and ylang-ylang essential oils could be of a great interest for the biomedical field, opening new directions for the design of film-coated surfaces with anti-adherence and anti-biofilm properties. PMID:25375335

  1. Efficiency of Vanilla, Patchouli and Ylang Ylang Essential Oils Stabilized by Iron Oxide@C14 Nanostructures against Bacterial Adherence and Biofilms Formed by Staphylococcus aureus and Klebsiella pneumoniae Clinical Strains

    Directory of Open Access Journals (Sweden)

    Maxim Bilcu

    2014-11-01

    Full Text Available Biofilms formed by bacterial cells are associated with drastically enhanced resistance against most antimicrobial agents, contributing to the persistence and chronicization of the microbial infections and to therapy failure. The purpose of this study was to combine the unique properties of magnetic nanoparticles with the antimicrobial activity of three essential oils to obtain novel nanobiosystems that could be used as coatings for catheter pieces with an improved resistance to Staphylococcus aureus and Klebsiella pneumoniae clinical strains adherence and biofilm development. The essential oils of ylang ylang, patchouli and vanilla were stabilized by the interaction with iron oxide@C14 nanoparticles to be further used as coating agents for medical surfaces. Iron oxide@C14 was prepared by co-precipitation of Fe+2 and Fe+3 and myristic acid (C14 in basic medium. Vanilla essential oil loaded nanoparticles pelliculised on the catheter samples surface strongly inhibited both the initial adherence of S. aureus cells (quantified at 24 h and the development of the mature biofilm quantified at 48 h. Patchouli and ylang-ylang essential oils inhibited mostly the initial adherence phase of S. aureus biofilm development. In the case of K. pneumoniae, all tested nanosystems exhibited similar efficiency, being active mostly against the adherence K. pneumoniae cells to the tested catheter specimens. The new nanobiosystems based on vanilla, patchouli and ylang-ylang essential oils could be of a great interest for the biomedical field, opening new directions for the design of film-coated surfaces with anti-adherence and anti-biofilm properties.

  2. Sources and transport of dissolved iron and manganese along the continental margin of the Bay of Biscay

    Directory of Open Access Journals (Sweden)

    A. Laës

    2007-01-01

    Full Text Available Dissolved iron (DFe; <0.2 µm and dissolved manganese (DMn; <0.2 µm concentrations were determined in the water column of the Bay of Biscay (eastern North Atlantic Ocean in March 2002. The samples were collected along a transect traversing from the European continental shelf over the continental slope. The highest DFe and DMn concentrations (2.39 nM and 6.10 nM, respectively were observed in the bottom waters on the shelf at stations closest to the coast. The release of trace metal from resuspended particles and the diffusion from pore waters were probably at the origin of elevated DFe and DMn concentrations in the Bottom Boundary Layer (BBL. In the slope region, the highest total dissolvable iron (TDFe, DFe and DMn values (24.6 nM, 1.58 nM and 2.12 nM, respectively were observed close to the bottom at depth of ca.~600–700 m. Internal wave activity and slope circulation are thought to be at the origin of this phenomenon. These processes were also very likely the cause of elevated concentrations (DFe: 1.27 nM, DMn: 2.34 nM measured in surface waters of stations located in the same area. At stations off the continental slope, the vertical distribution of both metals were typical of open ocean conditions, indicating that inputs from the continental margin did not impact the metal distributions in the offshore waters.

  3. Differential Regulation of Ferritin Subunits and Iron Transport Proteins: An Effect of Targeted Hepatic X-Irradiation

    Directory of Open Access Journals (Sweden)

    Naila Naz

    2013-01-01

    Full Text Available The current study aimed to investigate radiation-induced regulation of iron proteins including ferritin subunits in rats. Rat livers were selectively irradiated in vivo at 25 Gy. This dose can be used to model radiation effects to the liver without inducing overt radiation-induced liver disease. Sham-irradiated rats served as controls. Isolated hepatocytes were irradiated at 8 Gy. Ferritin light polypeptide (FTL was detectable in the serum of sham-irradiated rats with an increase after irradiation. Liver irradiation increased hepatic protein expression of both ferritin subunits. A rather early increase (3 h was observed for hepatic TfR1 and Fpn-1 followed by a decrease at 12 h. The increase in TfR2 persisted over the observed time. Parallel to the elevation of AST levels, a significant increase (24 h in hepatic iron content was measured. Complete blood count analysis showed a significant decrease in leukocyte number with an early increase in neutrophil granulocytes and a decrease in lymphocytes. In vitro, a significant increase in ferritin subunits at mRNA level was detected after irradiation which was further induced with a combination treatment of irradiation and acute phase cytokine. Irradiation can directly alter the expression of ferritin subunits and this response can be strongly influenced by radiation-induced proinflammatory cytokines. FTL can be used as a serum marker for early phase radiation-induced liver damage.

  4. Effect of injection velocity and particle concentration on transport of nanoscale zero-valent iron and hydraulic conductivity in saturated porous media

    Science.gov (United States)

    Strutz, Tessa J.; Hornbruch, Götz; Dahmke, Andreas; Köber, Ralf

    2016-08-01

    Successful groundwater remediation by injecting nanoscale zero-valent iron (NZVI) particles requires efficient particle transportation and distribution in the subsurface. This study focused on the influence of injection velocity and particle concentration on the spatial NZVI particle distribution, the deposition processes and on quantifying the induced decrease in hydraulic conductivity (K) as a result of particle retention by lab tests and numerical simulations. Horizontal column tests of 2 m length were performed with initial Darcy injection velocities (q0) of 0.5, 1.5, and 4.1 m/h and elemental iron input concentrations (Fe0in) of 0.6, 10, and 17 g/L. Concentrations of Fe0 in the sand were determined by magnetic susceptibility scans, which provide detailed Fe0 distribution profiles along the column. NZVI particles were transported farther at higher injection velocity and higher input concentrations. K decreased by one order of magnitude during injection in all experiments, with a stronger decrease after reaching Fe0 concentrations of about 14-18 g/kg(sand). To simulate the observed nanoparticle transport behavior the existing finite-element code OGS has been successfully extended and parameterized for the investigated experiments using blocking, ripening, and straining as governing deposition processes. Considering parameter relationships deduced from single simulations for each experiment (e.g. deposition rate constants as a function of flow velocity) one mean parameter set has been generated reproducing the observations in an adequate way for most cases of the investigated realistic injection conditions. An assessment of the deposition processes related to clogging effects showed that the percentage of retention due to straining and ripening increased during experimental run time resulting in an ongoing reduction of K. Clogging is mainly evoked by straining which dominates particle deposition at higher flow velocities, while blocking and ripening play a

  5. Effect of injection velocity and particle concentration on transport of nanoscale zero-valent iron and hydraulic conductivity in saturated porous media.

    Science.gov (United States)

    Strutz, Tessa J; Hornbruch, Götz; Dahmke, Andreas; Köber, Ralf

    2016-08-01

    Successful groundwater remediation by injecting nanoscale zero-valent iron (NZVI) particles requires efficient particle transportation and distribution in the subsurface. This study focused on the influence of injection velocity and particle concentration on the spatial NZVI particle distribution, the deposition processes and on quantifying the induced decrease in hydraulic conductivity (K) as a result of particle retention by lab tests and numerical simulations. Horizontal column tests of 2m length were performed with initial Darcy injection velocities (q0) of 0.5, 1.5, and 4.1m/h and elemental iron input concentrations (Fe(0)in) of 0.6, 10, and 17g/L. Concentrations of Fe(0) in the sand were determined by magnetic susceptibility scans, which provide detailed Fe(0) distribution profiles along the column. NZVI particles were transported farther at higher injection velocity and higher input concentrations. K decreased by one order of magnitude during injection in all experiments, with a stronger decrease after reaching Fe(0) concentrations of about 14-18g/kg(sand). To simulate the observed nanoparticle transport behavior the existing finite-element code OGS has been successfully extended and parameterized for the investigated experiments using blocking, ripening, and straining as governing deposition processes. Considering parameter relationships deduced from single simulations for each experiment (e.g. deposition rate constants as a function of flow velocity) one mean parameter set has been generated reproducing the observations in an adequate way for most cases of the investigated realistic injection conditions. An assessment of the deposition processes related to clogging effects showed that the percentage of retention due to straining and ripening increased during experimental run time resulting in an ongoing reduction of K. Clogging is mainly evoked by straining which dominates particle deposition at higher flow velocities, while blocking and ripening play a

  6. Iron overdose

    Science.gov (United States)

    Iron is a mineral found in many over-the-counter supplements. Iron overdose occurs when someone takes more than the ... This can be by accident or on purpose. Iron overdose is especially dangerous for children. A severe ...

  7. Iron Absorption in Drosophila melanogaster

    Directory of Open Access Journals (Sweden)

    Fanis Missirlis

    2013-05-01

    Full Text Available The way in which Drosophila melanogaster acquires iron from the diet remains poorly understood despite iron absorption being of vital significance for larval growth. To describe the process of organismal iron absorption, consideration needs to be given to cellular iron import, storage, export and how intestinal epithelial cells sense and respond to iron availability. Here we review studies on the Divalent Metal Transporter-1 homolog Malvolio (iron import, the recent discovery that Multicopper Oxidase-1 has ferroxidase activity (iron export and the role of ferritin in the process of iron acquisition (iron storage. We also describe what is known about iron regulation in insect cells. We then draw upon knowledge from mammalian iron homeostasis to identify candidate genes in flies. Questions arise from the lack of conservation in Drosophila for key mammalian players, such as ferroportin, hepcidin and all the components of the hemochromatosis-related pathway. Drosophila and other insects also lack erythropoiesis. Thus, systemic iron regulation is likely to be conveyed by different signaling pathways and tissue requirements. The significance of regulating intestinal iron uptake is inferred from reports linking Drosophila developmental, immune, heat-shock and behavioral responses to iron sequestration.

  8. Iron-sulfur-based single molecular wires for enhancing charge transport in enzyme-based bioelectronic systems.

    Science.gov (United States)

    Mahadevan, Aishwarya; Fernando, Teshan; Fernando, Sandun

    2016-04-15

    When redox enzymes are wired to electrodes outside a living cell (ex vivo), their ability to produce a sufficiently powerful electrical current diminishes significantly due to the thermodynamic and kinetic limitations associated with the wiring systems. Therefore, we are yet to harness the full potential of redox enzymes for the development of self-powering bioelectronics devices (such as sensors and fuel cells). Interestingly, nature uses iron-sulfur complexes ([Fe-S]), to circumvent these issues in vivo. Yet, we have not been able to utilize [Fe-S]-based chains ex vivo, primarily due to their instability in aqueous media. Here, a simple technique to attach iron (II) sulfide (FeS) to a gold surface in ethanol media and then complete the attachment of the enzyme in aqueous media is reported. Cyclic voltammetry and spectroscopy techniques confirmed the concatenation of FeS and glycerol-dehydrogenase/nicotinamide-adenine-dinucleotide (GlDH-NAD(+)) apoenzyme-coenzyme molecular wiring system on the base gold electrode. The resultant FeS-based enzyme electrode reached an open circuit voltage closer to its standard potential under a wide range of glycerol concentrations (0.001-1M). When probed under constant potential conditions, the FeS-based electrode was able to amplify current by over 10 fold as compared to electrodes fabricated with the conventional pyrroloquinoline quinone-based composite molecular wiring system. These improvements in current/voltage responses open up a wide range of possibilities for fabricating self-powering, bio-electronic devices. PMID:26657591

  9. Transport

    International Nuclear Information System (INIS)

    Transport is one of the major causes of environmental damage in Austria. Energy consumption, pollutants emissions, noise emissions, use of surfaces, sealing of surfaces, dissection of ecosystems and impact on landscape are the most significant environmental impacts caused by it. An overview of the transport development of passengers and freight in Austria is presented. Especially the energy consumption growth, carbon dioxide and nitrogen oxide emissions by type of transport, and the emissions development (HC, particle and carbon monoxide) of goods and passengers transport are analyzed covering the years 1980 - 1999. The health cost resulting from transport-related air pollution in Austria is given and measures to be taken for an effective control of the transport sector are mentioned. Figs. 8, Table 1. (nevyjel)

  10. Humic acid facilitates the transport of ARS-labeled hydroxyapatite nanoparticles in iron oxyhydroxide-coated sand

    Science.gov (United States)

    Hydroxyapatite nanoparticles (nHAP) have been widely used to remediate soil and wastewater contaminated with metals and radionuclides. However, our understanding of nHAP transport and fate is limited in natural environments that exhibit significant variability in solid and solution chemistry. The tr...

  11. Denitrification-coupled iron(ii) oxidation: a key process regulating the fate and transport of nitrate, phosphate, and arsenic in a wastewater-contaminated aquifer

    Science.gov (United States)

    Smith, Richard L.; Kent, Douglas B.; Repert, Deborah A.; Hart, C. P.

    2008-01-01

    Denitrification in the subsurface is often viewed as a heterotrophic process. However, some denitrifiers can also utilize inorganic electron donors. In particular, Fe(II), which is common in many aquifers, could be an important reductant for contaminant nitrate. Anoxic iron oxidation would have additional consequences, including decreased mobility for species like arsenic and phosphate, which bind strongly to hydrous Fe(III) oxide. A study was conducted in a wastewater contaminant plume on Cape Cod to assess the potential for denitrification- coupled Fe(II) oxidation. Previous changes in wastewater disposal upgradient of the study area had resulted in nitrate being transported into a portion of the anoxic zone of the plume and decreased concentrations of Fe(II), phosphate, and arsenic. A series of anoxic tracers (groundwater + nitrate + bromide) were injected into the unaffected, Fe(II)-containing zone under natural gradient conditions. Denitrification was stimulated within 1 m of transport (4 days) for both low and high (100 & 1000 μM) nitrate additions, initially producing stiochiometric quantities of nitrous oxide (>300 μM N) and trace amounts of nitrite. Subsequent injections at the same site reduced nitrate even more rapidly and produced less nitrous oxide, especially over longer transport distances. Fe(II) and nitrate concentrations decreased together and this was accompanied by an increase in colloidal Fe(III) and decreases in pH, total arsenic, and phosphate concentrations. All plume constituents returned to background levels several weeks after the tracer tests were completed. Groundwater microorganisms collected on filters during the tracer test rapidly and immediately reduced nitrite and oxidized Fe(II) in 3-hr laboratory incubations. Several pure cultures of Fe(II)-oxidizing denitrifying bacteria were isolated from core material and subsequently characterized. All of the isolates were mixotrophic, simultaneously oxidizing organic carbon and Fe

  12. Denitrification-Coupled Iron(II) Oxidation: A Key Process Regulating the Fate and Transport of Nitrate, Phosphate, and Arsenic in a Wastewater-Contaminated Aquifer

    Science.gov (United States)

    Smith, R. L.; Kent, D. B.; Repert, D. A.; Hart, C. P.

    2007-12-01

    Denitrification in the subsurface is often viewed as a heterotrophic process. However, some denitrifiers can also utilize inorganic electron donors. In particular, Fe(II), which is common in many aquifers, could be an important reductant for contaminant nitrate. Anoxic iron oxidation would have additional consequences, including decreased mobility for species like arsenic and phosphate, which bind strongly to hydrous Fe(III) oxide. A study was conducted in a wastewater contaminant plume on Cape Cod to assess the potential for denitrification- coupled Fe(II) oxidation. Previous changes in wastewater disposal upgradient of the study area had resulted in nitrate being transported into a portion of the anoxic zone of the plume and decreased concentrations of Fe(II), phosphate, and arsenic. A series of anoxic tracers (groundwater + nitrate + bromide) were injected into the unaffected, Fe(II)-containing zone under natural gradient conditions. Denitrification was stimulated within 1 m of transport (4 days) for both low and high (100 & 1000 μM) nitrate additions, initially producing stiochiometric quantities of nitrous oxide (>300 μM N) and trace amounts of nitrite. Subsequent injections at the same site reduced nitrate even more rapidly and produced less nitrous oxide, especially over longer transport distances. Fe(II) and nitrate concentrations decreased together and this was accompanied by an increase in colloidal Fe(III) and decreases in pH, total arsenic, and phosphate concentrations. All plume constituents returned to background levels several weeks after the tracer tests were completed. Groundwater microorganisms collected on filters during the tracer test rapidly and immediately reduced nitrite and oxidized Fe(II) in 3-hr laboratory incubations. Several pure cultures of Fe(II)-oxidizing denitrifying bacteria were isolated from core material and subsequently characterized. All of the isolates were mixotrophic, simultaneously oxidizing organic carbon and Fe

  13. Modeling water flow and bacterial transport in undisturbed lysimeters under irrigations of dairy shed effluent and water using HYDRUS-1D.

    Science.gov (United States)

    Jiang, Shuang; Pang, Liping; Buchan, Graeme D; Simůnek, Jirí; Noonan, Mike J; Close, Murray E

    2010-02-01

    HYDRUS-1D was used to simulate water flow and leaching of fecal coliforms and bromide (Br) through six undisturbed soil lysimeters (70 cm depth by 50 cm diameter) under field conditions. Dairy shed effluent (DSE) spiked with Br was applied to the lysimeters, which contained fine sandy loam layers. This application was followed by fortnightly spray or flood water irrigation. Soil water contents were measured at four soil depths over 171 days, and leachate was collected from the bottom. The post-DSE period simulations yielded a generally decreased saturated water content compared to the pre-DSE period, and an increased saturated hydraulic conductivity and air-entry index, suggesting that changes in soil hydraulic properties (e.g. via changes in structure) can be induced by irrigation and seasonal effects. The single-porosity flow model was successful in simulating water flow under natural climatic conditions and spray irrigation. However, for lysimeters under flood irrigation, when the effect of preferential flow paths becomes more significant, the good agreement between predicted and observed water contents could only be achieved by using a dual-porosity flow model. Results derived from a mobile-immobile transport model suggest that compared to Br, bacteria were transported through a narrower pore-network with less mass exchange between mobile and immobile water zones. Our study suggests that soils with higher topsoil clay content and soils under flood irrigation are at a high risk of bacteria leaching through preferential flow paths. Irrigation management strategies must minimize the effect of preferential flow to reduce bacterial leaching from land applications of effluent. PMID:19775719

  14. Calculation of the transport critical current density of c-axis textured 122 iron-based superconductors

    International Nuclear Information System (INIS)

    Highlights: ► We modeled the current paths in a c-axis textured pnictide as a flow network. ► 2 × 105 A/cm2 could be achieved in a c-axis textured K-doped 122 polycrystal. ► The dependences of Jc on density and invalid boundary were studied. ► Flaky grain could be benefit for high transport Jc. -- Abstract: The c-axis textured Sr1−xKxFe2As2 tapes produced by cold rolling and post-annealing, could carry a high super-current over 2 × 104 A/cm2. However, the magnitude is far from its maximum, because of the current obstacles associated with various defects in the material. To predict the maximal transport critical current density, we modeled the current paths in a c-axis textured polycrystal as a three-dimensional flow network, and calculated the maximum flow with the Ford–Fulkerson algorithm. It indicates that a much higher super-current of about 2 × 105 A/cm2 could be achieved in an ideal c-axis textured K-doped 122 polycrystal. The dependences of transport Jc on density, content of invalid boundary and grain size and shape were also studied. The results imply that, over 30% of the grain boundaries in the reported c-axis textured Sr1−xKxFe2As2 tapes may act as current obstacles, and the large ratio of width to thickness was expected to be the most favorable grain shape for high transport Jc in c-axis textured 122 superconducting tapes

  15. Forging the anthropogenic iron cycle.

    Science.gov (United States)

    Wang, Tao; Müller, Daniel B; Graedel, T E

    2007-07-15

    Metallurgical iron cycles are characterized for four anthropogenic life stages: production, fabrication and manufacturing, use, and waste management and recycling. This analysis is conducted for year 2000 and at three spatial levels: 68 countries and territories, nine world regions, and the planet. Findings include the following: (1) contemporary iron cycles are basically open and substantially dependent on environmental sources and sinks; (2) Asia leads the world regions in iron production and use; Oceania, Latin America and the Caribbean, Africa, and the Commonwealth of Independent States present a highly production-biased iron cycle; (3) purchased scrap contributes a quarter of the global iron and steel production; (4) iron exiting use is three times less than that entering use; (5) about 45% of global iron entering use is devoted to construction, 24% is devoted to transport equipment, and 20% goes to industrial machinery; (6) with respect to international trade of iron ore, iron and steel products, and scrap, 54 out of the 68 countries are net iron importers, while only 14 are net exporters; (7) global iron discharges in tailings, slag, and landfill approximate one-third of the iron mined. Overall, these results provide a foundation for studies of iron-related resource policy, industrial development, and waste and environmental management. PMID:17711233

  16. Bacterial contamination of enteral diets.

    OpenAIRE

    de Leeuw, I H; Vandewoude, M F

    1986-01-01

    Enteral feeding solutions can be contaminated by bacterial micro-organisms already present in the ingredients, or introduced during preparation or transport, or in the hospital ward. During jejunostomy feeding without pump or filter, ascending bacterial invasion of the feeding bag is possible. In patients with lowered immune response contaminated feedings can cause serious septic clinical problems. The progressive loss of the nutritional value of the enteral feeding solution by bacterial cont...

  17. Characterizing reactive oxygen generation and bacterial inactivation by a zerovalent iron-fullerene nano-composite device at neutral pH under UV-A illumination

    Energy Technology Data Exchange (ETDEWEB)

    Erdim, Esra [Center for the Environmental Implications of NanoTechnology, Duke University, Durham, NC 27708 (United States); Environmental Engineering Department, Marmara University, Istanbul 34469 (Turkey); Badireddy, Appala Raju [Center for the Environmental Implications of NanoTechnology, Duke University, Durham, NC 27708 (United States); Department of Civil and Environmental Engineering, Duke University, Durham, NC 27708 (United States); Wiesner, Mark R., E-mail: wiesner@duke.edu [Department of Civil and Environmental Engineering, Duke University, Durham, NC 27708 (United States); Department of Civil and Environmental Engineering, Duke University, Durham, NC 27708 (United States)

    2015-02-11

    Highlights: • We synthesized a novel ZVI/nC{sub 60} nano-composite device for multi-ROS generation. • O{sub 2}·{sup −} (UV-A independent) and {sup 1}O{sub 2} (UV-A dependent) are generated at neutral pH. • At low Fe concentration, ZVI/nC{sub 60} device is a better ROS generator than ZVI alone. • C{sub 60} mediates electron transfer from ZVI surface to dissolved O{sub 2} to produce O{sub 2}·{sup −}. • Bacteria are rapidly inactivated by O{sub 2}·{sup −} even at low ZVI/nC{sub 60} ratio. - Abstract: A nano-composite device composed of nano-scale zerovalent iron (ZVI) and C{sub 60} fullerene aggregates (ZVI/nC{sub 60}) was produced via a rapid nucleation method. The device was conceived to deliver reactive oxygen species (ROS) generated by photosensitization and/or electron transfer to targeted contaminants, including waterborne pathogens under neutral pH conditions. Certain variations of the nano-composite were fabricated differing in the amounts of (1) ZVI (0.1 mM and 2 mM) but not nC{sub 60} (2.5 mg-C/L), and (2) nC{sub 60} (0–25 mg-C/L) but not ZVI (0.1 mM). The generation of ROS by the ZVI/nC{sub 60} nano-composites and ZVI nanoparticles was quantified using organic probe compounds. 0.1 mM ZVI/2.5 mg-C/L C{sub 60} generated 3.74-fold higher O{sub 2}·{sup −} concentration and also resulted in an additional 2-log inactivation of Pseudomonas aeruginosa when compared to 0.1 mM ZVI (3-log inactivation). 2 mM ZVI/2.5 mg-C/L nC{sub 60} showed negligible improvement over 2 mM ZVI in terms of O{sub 2}·{sup −} generation or inactivation. Further, incremental amounts of nC{sub 60} in the range of 0–25 mg-C/L in 0.1 mM ZVI/nC{sub 60} led to increased O{sub 2}·{sup −} concentration, independent of UV-A. This study demonstrates that ZVI/nC{sub 60} device delivers (1) enhanced O{sub 2}·{sup −} with nC{sub 60} as a mediator for electron transfer, and (2) {sup 1}O{sub 2} (only under UV-A illumination) at neutral pH conditions.

  18. The Pharmacokinetics and Pharmacodynamics of Iron Preparations

    Directory of Open Access Journals (Sweden)

    Susanna Burckhardt

    2011-01-01

    Full Text Available Standard approaches are not appropriate when assessing pharmacokinetics of iron supplements due to the ubiquity of endogenous iron, its compartmentalized sites of action, and the complexity of the iron metabolism. The primary site of action of iron is the erythrocyte, and, in contrast to conventional drugs, no drug-receptor interaction takes place. Notably, the process of erythropoiesis, i.e., formation of new erythrocytes, takes 3−4 weeks. Accordingly, serum iron concentration and area under the curve (AUC are clinically irrelevant for assessing iron utilization. Iron can be administered intravenously in the form of polynuclear iron(III-hydroxide complexes with carbohydrate ligands or orally as iron(II (ferrous salts or iron(III (ferric complexes. Several approaches have been employed to study the pharmacodynamics of iron after oral administration. Quantification of iron uptake from radiolabeled preparations by the whole body or the erythrocytes is optimal, but alternatively total iron transfer can be calculated based on known elimination rates and the intrinsic reactivity of individual preparations. Degradation kinetics, and thus the safety, of parenteral iron preparations are directly related to the molecular weight and the stability of the complex. High oral iron doses or rapid release of iron from intravenous iron preparations can saturate the iron transport system, resulting in oxidative stress with adverse clinical and subclinical consequences. Appropriate pharmacokinetics and pharmacodynamics analyses will greatly assist our understanding of the likely contribution of novel preparations to the management of anemia.

  19. Severe bacterial infections in patients with non-transfusion-dependent thalassemia: prevalence and clinical risk factors

    Directory of Open Access Journals (Sweden)

    Nattiya Teawtrakul

    2015-10-01

    Conclusion: The prevalence of bacterial infection in patients with NTDT was found to be moderate. Time after splenectomy >10 years, deferoxamine therapy, and iron overload may be clinical risk factors for severe bacterial infection in patients with NTDT. Bacterial infection should be recognized in splenectomized patients with NTDT, particularly those who have an iron overload.

  20. Influence of Iron Supplementation on DMT1 (IRE)-induced Transport of Lead by Brain Barrier Systems in vivo

    Institute of Scientific and Technical Information of China (English)

    AN Dai Zhi; AI Jun Tao; FANG Hong Juan; SUN Ru Bao; SHI Yun; WANG Li Li; WANG Qiang

    2015-01-01

    Objective To investigate the potential involvement of DMT1 (IRE) protein in the brain vascular system in vivo during Pb exposure. Methods Three groups of male Sprague-Dawley rats were exposed to Pb in drinking water, among which two groups were concurrently administered by oral gavage once every other day as the low and high Fe treatment group, respectively, for 6 weeks. At the same time, the group only supplied with high Fe was also set as a reference. The animals were decapitated, then brain capillary-rich fraction was isolate from cerebral cortex. Western blot method was used to identify protein expression, and RT-PCR to detect the change of the mRNA. Results Pb exposure significantly increased Pb concentrations in cerebral cortex. Low Fe dose significantly reduced the cortex Pb levels, However, high Fe dose increased the cortex Pb levels. Interestingly, changes of DMT1 (IRE) protein in brain capillary-rich fraction were highly related to the Pb level, but those of DMT1 (IRE) mRNA were not significantly different. Moreover, the consistent changes in the levels of p-ERK1/2 or IRP1 with the changes in the levels of DMT1 (IRE). Conclusion These results suggest that Pb is transported into the brain through DMT1 (IRE), and the ERK MAPK pathway is involved in DMT1 (IRE)-mediated transport regulation in brain vascular system in vivo.

  1. Les effets des interfaces sur les proprietes magnetiques et de transport des multicouches nickel/iron et cobalt/silver

    Science.gov (United States)

    Veres, Teodor

    Cette these est consacree a l'etude de l'evolution structurale des proprietes magnetiques et de transport des multicouches Ni/Fe et nanostructures a base de Co et de l'Ag. Dans une premiere partie, essentiellement bibliographique, nous introduisons quelques concepts de base relies aux proprietes magnetiques et de transport des multicouches metalliques. Ensuite, nous presentons une breve description des methodes d'analyse des resultats. La deuxieme partie est consacree a l'etude des proprietes magnetiques et de transport des multicouches ferromagnetiques/ferromagnetiques Ni/Fe. Nous montrerons qu'une interpretation coherente de ces proprietes necessite la prise en consideration des effets des interfaces. Nous nous attacherons a mettre en evidence, a evaluer et a etudier les effets de ces interfaces ainsi que leur evolution, et ce, suite a des traitements thermiques tel que le depot a temperature elevee et l'irradiation ionique. Les analyses correlees de la structure et de la magnetoresistance nous permettront d'emettre des conclusions sur l'influence des couches tampons entre l'interface et le substrat ainsi qu'entre les couches elles-memes sur le comportement magnetique des couches F/F. La troisieme partie est consacree aux systemes a Magneto-Resistance Geante (MRG) a base de Co et Ag. Nous allons etudier l'evolution de la microstructure suite a l'irradiation avec des ions Si+ ayant une energie de 1 MeV, ainsi que les effets de ces changements sur le comportement magnetique. Cette partie debutera par l'analyse des proprietes d'une multicouche hybride, intermediaire entre les multicouches et les materiaux granulaires. Nous analyserons a l'aide des mesures de diffraction, de relaxation superparamagnetique et de magnetoresistance, les evolutions structurales produites par l'irradiation ionique. Nous etablirons des modeles qui nous aideront a interpreter les resultats pour une serie des multicouches qui couvrent un large eventail de differents comportements magnetiques

  2. Use of iron-meso-tetra-(4-sulfonatophenyl)-porphine (FeTPPS) to examine hemopexin-mediated heme transport

    International Nuclear Information System (INIS)

    Hemopexin (HPX) alters conformation upon binding heme as shown by circular dichroism (CD) while FeTPPS binds without changes in the CD spectrum . Therefore, FeTPPS was used to examine the importance of changes in HPX conformation for receptor binding and for HPX-mediated heme transport. FeTPPS-HPX binds to the HPX receptor on mouse hepatoma Hepa cells but with lower affinity then heme-HPX. Incubation of cells with 50 nM heme-125I-HPX after 2.5 μM heme- or FeTPPS-HPX decreased binding from 0.34 pmol/mg protein to 0.10 and 0.27, respectively. Preincubation with 2.5 μM apoHPX reduced binding to the same extent as FeTPPS-HPX indicating that certain conformational changes in HPX increase the affinity of its receptor. Interestingly, FeTPPS-HPX inhibited heme uptake more effectively than heme-HPX. Preincubation of cells with 2.5 μM heme- or FeTPPS-HPX decreased 55Feheme uptake from 55Feheme-HPX (500 nM) by 28% and 70%, respectively; heme or FeTPPS alone had no effect. After incubation with 500 nM 55Feheme-HPX or 55FeTPPS-HPX for up to 30 minutes at 370C, 55Feheme was associated with the plasma-membrane and intracellular compartments but 55FeTPPs remained with the plasma membrane. FeTPPS presented to the cells as a complex with HPX inhibits HPX-mediated heme uptake by blocking events after heme-HPX binds to its receptor but needed for heme transport

  3. Iron budgets for three distinct biogeochemical sites around the Kerguelen archipelago (Southern Ocean during the natural fertilisation experiment KEOPS-2

    Directory of Open Access Journals (Sweden)

    A. R. Bowie

    2014-12-01

    Full Text Available Iron availability in the Southern Ocean controls phytoplankton growth, community composition and the uptake of atmospheric CO2 by the biological pump. The KEOPS-2 experiment took place around the Kerguelen plateau in the Indian sector of the Southern Ocean, a region naturally fertilised with iron at the scale of hundreds to thousands of square kilometres, producing a mosaic of spring blooms which showed distinct biological and biogeochemical responses to fertilisation. This paper presents biogeochemical iron budgets (incorporating vertical and lateral supply, internal cycling, and sinks for three contrasting sites: an upstream high-nutrient low-chlorophyll reference, over the plateau, and in the offshore plume east of Kerguelen Island. These budgets show that distinct regional environments driven by complex circulation and transport pathways are responsible for differences in the mode and strength of iron supply, with vertical supply dominant on the plateau and lateral supply dominant in the plume. Iron supply from "new" sources to surface waters of the plume was double that above the plateau and 20 times greater than at the reference site, whilst iron demand (measured by cellular uptake in the plume was similar to the plateau but 40 times greater than the reference. "Recycled" iron supply by bacterial regeneration and zooplankton grazing was a relative minor component at all sites (<8% of "new" supply, in contrast to earlier findings from other biogeochemical iron budgets in the Southern Ocean. Over the plateau, a particulate iron dissolution term of 2.5% was invoked to balance the budget; this approximately doubled the standing stock of dissolved iron in the mixed layer. The exchange of iron between dissolved, biogenic and lithogenic particulate pools was highly dynamic in time and space, resulting in a decoupling of iron supply and carbon export and, importantly, controlling the efficiency of fertilisation.

  4. Iron budgets for three distinct biogeochemical sites around the Kerguelen archipelago (Southern Ocean) during the natural fertilisation experiment KEOPS-2

    Science.gov (United States)

    Bowie, A. R.; van der Merwe, P.; Quéroué, F.; Trull, T.; Fourquez, M.; Planchon, F.; Sarthou, G.; Chever, F.; Townsend, A. T.; Obernosterer, I.; Sallée, J.-B.; Blain, S.

    2014-12-01

    Iron availability in the Southern Ocean controls phytoplankton growth, community composition and the uptake of atmospheric CO2 by the biological pump. The KEOPS-2 experiment took place around the Kerguelen plateau in the Indian sector of the Southern Ocean, a region naturally fertilised with iron at the scale of hundreds to thousands of square kilometres, producing a mosaic of spring blooms which showed distinct biological and biogeochemical responses to fertilisation. This paper presents biogeochemical iron budgets (incorporating vertical and lateral supply, internal cycling, and sinks) for three contrasting sites: an upstream high-nutrient low-chlorophyll reference, over the plateau, and in the offshore plume east of Kerguelen Island. These budgets show that distinct regional environments driven by complex circulation and transport pathways are responsible for differences in the mode and strength of iron supply, with vertical supply dominant on the plateau and lateral supply dominant in the plume. Iron supply from "new" sources to surface waters of the plume was double that above the plateau and 20 times greater than at the reference site, whilst iron demand (measured by cellular uptake) in the plume was similar to the plateau but 40 times greater than the reference. "Recycled" iron supply by bacterial regeneration and zooplankton grazing was a relative minor component at all sites (<8% of "new" supply), in contrast to earlier findings from other biogeochemical iron budgets in the Southern Ocean. Over the plateau, a particulate iron dissolution term of 2.5% was invoked to balance the budget; this approximately doubled the standing stock of dissolved iron in the mixed layer. The exchange of iron between dissolved, biogenic and lithogenic particulate pools was highly dynamic in time and space, resulting in a decoupling of iron supply and carbon export and, importantly, controlling the efficiency of fertilisation.

  5. Iron budgets for three distinct biogeochemical sites around the Kerguelen Archipelago (Southern Ocean) during the natural fertilisation study, KEOPS-2

    Science.gov (United States)

    Bowie, A. R.; van der Merwe, P.; Quéroué, F.; Trull, T.; Fourquez, M.; Planchon, F.; Sarthou, G.; Chever, F.; Townsend, A. T.; Obernosterer, I.; Sallée, J.-B.; Blain, S.

    2015-07-01

    Iron availability in the Southern Ocean controls phytoplankton growth, community composition and the uptake of atmospheric CO2 by the biological pump. The KEOPS-2 (KErguelen Ocean and Plateau compared Study 2) "process study", took place around the Kerguelen Plateau in the Indian sector of the Southern Ocean. This is a region naturally fertilised with iron on the scale of hundreds to thousands of square kilometres, producing a mosaic of spring blooms which show distinct biological and biogeochemical responses to fertilisation. This paper presents biogeochemical iron budgets (incorporating vertical and lateral supply, internal cycling, and sinks) for three contrasting sites: an upstream high-nutrient low-chlorophyll reference, over the plateau and in the offshore plume east of the Kerguelen Islands. These budgets show that distinct regional environments driven by complex circulation and transport pathways are responsible for differences in the mode and strength of iron supply, with vertical supply dominant on the plateau and lateral supply dominant in the plume. Iron supply from "new" sources (diffusion, upwelling, entrainment, lateral advection, atmospheric dust) to the surface waters of the plume was double that above the plateau and 20 times greater than at the reference site, whilst iron demand (measured by cellular uptake) in the plume was similar to that above the plateau but 40 times greater than at the reference site. "Recycled" iron supply by bacterial regeneration and zooplankton grazing was a relatively minor component at all sites (< 8 % of new supply), in contrast to earlier findings from other biogeochemical iron budgets in the Southern Ocean. Over the plateau, a particulate iron dissolution term of 2.5 % was invoked to balance the budget; this approximately doubled the standing stock of dissolved iron in the mixed layer. The exchange of iron between dissolved, biogenic particulate and lithogenic particulate pools was highly dynamic in time and space

  6. A review of the environmental implications of in situ remediation by nanoscale zero valent iron (nZVI): Behavior, transport and impacts on microbial communities.

    Science.gov (United States)

    Lefevre, Emilie; Bossa, Nathan; Wiesner, Mark R; Gunsch, Claudia K

    2016-09-15

    The increasing use of strategies incorporating nanoscale zero valent iron (nZVI) for soil and groundwater in situ remediation is raising some concerns regarding the potential adverse effects nZVI could have on indigenous microbial communities and ecosystem functioning. This review provides an overview of the current literature pertaining to the impacts of nZVI applications on microbial communities. Toxicity studies suggest that cell membrane disruption and oxidative stress through the generation of Fe(2+) and reactive oxygen species by nZVI are the main mechanisms contributing to nZVI cytotoxicity. In addition, nZVI has been shown to substantially alter the taxonomic and functional composition of indigenous microbial communities. However, because the physico-chemical conditions encountered in situ highly modulate nZVI toxicity, a better understanding of the environmental factors affecting nZVI toxicity and transport in the environment is of primary importance in evaluating the ecological consequences that could result from a more extensive use of nZVI. PMID:26897610

  7. Reaction-Based Reactive Transport Modeling of Iron Reduction and Uranium Immobilization at Area 2 of the NABIR Field Research Center

    Energy Technology Data Exchange (ETDEWEB)

    Burgos, W.D.

    2009-09-02

    This report summarizes research conducted in conjunction with a project entitled “Reaction-Based Reactive Transport Modeling of Iron Reduction and Uranium Immobilization at Area 2 of the NABIR Field Research Center”, which was funded through the Integrative Studies Element of the former NABIR Program (now the Environmental Remediation Sciences Program) within the Office of Biological and Environmental Research. Dr. William Burgos (The Pennsylvania State University) was the overall PI/PD for the project, which included Brian Dempsey (Penn State), Gour-Tsyh (George) Yeh (Central Florida University), and Eric Roden (formerly at The University of Alabama, now at the University of Wisconsin) as separately-funded co-PIs. The project focused on development of a mechanistic understanding and quantitative models of coupled Fe(III)/U(VI) reduction in FRC Area 2 sediments. The work builds on our previous studies of microbial Fe(III) and U(VI) reduction, and was directly aligned with the Scheibe et al. ORNL FRC Field Project at Area 2.

  8. Interaction between Cu2+ and different types of surface-modified nanoscale zero-valent iron during their transport in porous media.

    Science.gov (United States)

    Dong, Haoran; Zeng, Guangming; Zhang, Chang; Liang, Jie; Ahmad, Kito; Xu, Piao; He, Xiaoxiao; Lai, Mingyong

    2015-06-01

    This study investigated the interaction between Cu2+ and nano zero-valent iron (NZVI) coated with three types of stabilizers (i.e., polyacrylic acid [PAA], Tween-20 and starch) by examining the Cu2+ uptake, colloidal stability and mobility of surface-modified NZVI (SM-NZVI) in the presence of Cu2+. The uptake of Cu2+ by SM-NZVI and the colloidal stability of the Cu-bearing SM-NZVI were examined in batch tests. The results showed that NZVI coated with different modifiers exhibited different affinities for Cu2+, which resulted in varying colloidal stability of different SM-NZVI in the presence of Cu2+. The presence of Cu2+ exerted a slight influence on the aggregation and settling of NZVI modified with PAA or Tween-20. However, the presence of Cu2+ caused significant aggregation and sedimentation of starch-modified NZVI, which is due to Cu2+ complexation with the starch molecules coated on the surface of the particles. Column experiments were conducted to investigate the co-transport of Cu2+ in association with SM-NZVI in water-saturated quartz sand. It was presumed that a physical straining mechanism accounted for the retention of Cu-bearing SM-NZVI in the porous media. Moreover, the enhanced aggregation of SM-NZVI in the presence of Cu2+ may be contributing to this straining effect. PMID:26040744

  9. The ttpC Gene Is Contained in Two of Three TonB Systems in the Human Pathogen Vibrio vulnificus, but Only One Is Active in Iron Transport and Virulence

    OpenAIRE

    Kustusch, Ryan J.; Kuehl, Carole J.; Crosa, Jorge H.

    2012-01-01

    The TonB system of proteins is required for the energy-dependent active transport of iron-bound substrates across the outer membrane of Gram-negative bacteria. We have identified three TonB systems within the human pathogen Vibrio vulnificus. The TonB1 system contains the TonB1, ExbD1, and ExbB1 proteins, whereas both the TtpC2-TonB2 and TtpC3-TonB3 systems contain an additional fourth protein, TtpC. Here we report that TtpC3, although highly related to TtpC2, is inactive in iron transport, w...

  10. Tuning Electron-Conduction and Spin Transport in Magnetic Iron Oxide Nanoparticle Assemblies via Tetrathiafulvalene-Fused Ligands.

    Science.gov (United States)

    Lv, Zhong-Peng; Luan, Zhong-Zhi; Wang, Hai-Ying; Liu, Sheng; Li, Cheng-Hui; Wu, Di; Zuo, Jing-Lin; Sun, Shouheng

    2015-12-22

    We report a strategy to coat Fe3O4 nanoparticles (NPs) with tetrathiafulvalene-fused carboxylic ligands (TTF-COO-) and to control electron conduction and magnetoresistance (MR) within the NP assemblies. The TTF-COO-Fe3O4 NPs were prepared by replacing oleylamine (OA) from OA-coated 5.7 nm Fe3O4 NPs. In the TTF-COO-Fe3O4 NPs, the ligand binding density was controlled by the ligand size, and spin polarization on the Fe3O4 NPs was greatly improved. As a result, the interparticle spacing within the TTF-COO-Fe3O4 NP assemblies are readily controlled by the geometric length of TTF-based ligand. The shorter the distance and the better the conjugation between the TTF's HOMO and LUMO, the higher the conductivity and MR of the assembly. The TTF-coating further stabilized the Fe3O4 NPs against deep oxidation and allowed I2-doping to increase electron conduction, making it possible to measure MR of the NP assembly at low temperature (<100 K). The TTF-COO-coating provides a viable way for producing stable magnetic Fe3O4 NP assemblies with controlled electron transport and MR for spintronics applications. PMID:26563827

  11. Formation of nitrosyl non-heme iron-sulphur complexes of a mitrochondria electron-transport chain in a liver and kidneys under prolonged permanent action of radiation contamination in the Chernobyl region

    International Nuclear Information System (INIS)

    No-complexes with iron-sulfur protein of the N-type (EPR signal g=2.03 at 77 K) have been revealed in a mitochondria electron transport chain in a liver and kidneys of animals which were hold for 1.5 years in the Chernobyl area under action of low intensity ionizing radiation as a result of incorporated radionuclides. These alterations in protein give evidence of changes in oxidation and phosphorylation in tissues

  12. Iron metabolism in the mononuclear phagocyte system

    Institute of Scientific and Technical Information of China (English)

    Weina Kong; Xianglin Duan; Zhenhua Shi; Yanzhong Chang

    2008-01-01

    The maintenance of body iron homeostasis requires the coordination of multiple regulatory mechanisms of iron metabolism.The mononuclear phagocyte system (MPS,composed of monocytes,macrophages,and their precursor cells) is crucial in the maintenance of iron homeostasis.Recycling of iron is carried out by specialized macrophages via engulfment of aged erythrocytes.The iron stores of macrophages depend on the levels of recovered and exported iron.However,the molecular mechanisms underlying iron homeostasis in macrophages are poorly understood.Recent studies characterizing the function and regulation of natural resistance-associated macrophage protein 1 (Nrampl),divalent metal transporter 1 (DMTI),HLA-linked hemechromatosis gene (HFE),ferroportin 1 (FPN1),and hepcidin are rapidly expanding our knowledge on the molecular level of MPS iron handling.These studies are deepening our understanding about the molecular mechanism of iron homeostasis and iron-related diseases.

  13. HIGHWAY INFRASTRUCTURE FOCUS AREA NEXT-GENERATION INFRASTRUCTURE MATERIALS VOLUME I - TECHNICAL PROPOSAL & MANAGEMENTENHANCEMENT OF TRANSPORTATION INFRASTRUCTURE WITH IRON-BASED AMORPHOUS-METAL AND CERAMIC COATINGS

    Energy Technology Data Exchange (ETDEWEB)

    Farmer, J C

    2007-12-04

    The infrastructure for transportation in the United States allows for a high level of mobility and freight activity for the current population of 300 million residents, and several million business establishments. According to a Department of Transportation study, more than 230 million motor vehicles, ships, airplanes, and railroads cars were used on 6.4 million kilometers (4 million miles) of highways, railroads, airports, and waterways in 1998. Pipelines and storage tanks were considered to be part of this deteriorating infrastructure. The annual direct cost of corrosion in the infrastructure category was estimated to be approximately $22.6 billion in 1998. There were 583,000 bridges in the United States in 1998. Of this total, 200,000 bridges were steel, 235,000 were conventional reinforced concrete, 108,000 bridges were constructed using pre-stressed concrete, and the balance was made using other materials of construction. Approximately 15 percent of the bridges accounted for at this point in time were structurally deficient, primarily due to corrosion of steel and steel reinforcement. Iron-based amorphous metals, including SAM2X5 (Fe{sub 49.7}Cr{sub 17.7}Mn{sub 1.9}Mo{sub 7.4}W{sub 1.6}B{sub 15.2}C{sub 3.8}Si{sub 2.4}) and SAM1651 (Fe{sub 48}Mo{sub 14}Cr{sub 15}Y{sub 2}C{sub 15}B{sub 6}) have been developed, and have very good corrosion resistance. These materials have been prepared as a melt-spun ribbons, as well as gas atomized powders and thermal-spray coatings. During electrochemical testing in several environments, including seawater at 90 C, the passive film stabilities of these materials were found to be comparable to that of more expensive high-performance alloys, based on electrochemical measurements of the passive film breakdown potential and general corrosion rates. These materials also performed very well in standard salt fog tests. Chromium (Cr), molybdenum (Mo) and tungsten (W) provided corrosion resistance, and boron (B) enabled glass formation

  14. Iron Overload

    Science.gov (United States)

    ... drug called an iron chelator to remove excess iron from your body because of transfusion-dependent anemias. Be sure to talk with your doctor about the potential benefits and risks of using these drugs. Previous Article ...

  15. Mycobacterium tuberculosis Can Utilize Heme as an Iron Source▿

    OpenAIRE

    Jones, Christopher M.; Niederweis, Michael

    2011-01-01

    Most iron in mammals is found within the heme prosthetic group. Consequently, many bacterial pathogens possess heme acquisition systems to utilize iron from the host. Here, we demonstrate that Mycobacterium tuberculosis can utilize heme as an iron source, suggesting that M. tuberculosis possesses a yet-unknown heme acquisition system.

  16. Neurotransmitter transporters

    DEFF Research Database (Denmark)

    Gether, Ulrik; Andersen, Peter H; Larsson, Orla M;

    2006-01-01

    The concentration of neurotransmitters in the extracellular space is tightly controlled by distinct classes of membrane transport proteins. This review focuses on the molecular function of two major classes of neurotransmitter transporter that are present in the cell membrane of neurons and....... Recent research has provided substantial insight into the structure and function of these transporters. In particular, the recent crystallizations of bacterial homologs are of the utmost importance, enabling the first reliable structural models of the mammalian neurotransmitter transporters to be...

  17. Overcoming the Heme Paradox: Heme Toxicity and Tolerance in Bacterial Pathogens▿

    OpenAIRE

    Anzaldi, Laura L.; Skaar, Eric P.

    2010-01-01

    Virtually all bacterial pathogens require iron to infect vertebrates. The most abundant source of iron within vertebrates is in the form of heme as a cofactor of hemoproteins. Many bacterial pathogens have elegant systems dedicated to the acquisition of heme from host hemoproteins. Once internalized, heme is either degraded to release free iron or used intact as a cofactor in catalases, cytochromes, and other bacterial hemoproteins. Paradoxically, the high redox potential of heme makes it a l...

  18. Within-host evolution of Pseudomonas aeruginosa toward iron acquisition from hemoglobin in polymicrobial CF infections

    DEFF Research Database (Denmark)

    Khademi, Seyed Mohammad Hossein; Marvig, Rasmus Lykke; Pedersen, Søren Damkiær;

    2014-01-01

    Bacterial pathogens require iron to survive and colonize a human host but their access to free iron is often limited by iron-withholding process where free iron is bound by proteins such as hemoglobin. Although most pathogens have developed tactics to acquire iron from host proteins, little is...

  19. The association of vanadium with the iron transport system in human blood as determined by gel filtration and neutron activation analysis

    International Nuclear Information System (INIS)

    Although vanadium has a suspected physiological role in man, the existing data available on its metabolism at molecular level are very limited and inadequate for modern toxicological and nutritional evaluations. To study its metabolic patterns in the human body it is necessary to determine the association with different biochemical components. The paper describes the identification of V-binding components in human blood by means of fractionation of human serum proteins and neutron activation analysis of the protein fractions of different molecular weight. Since information on the chemical form of V in blood is not well known, preliminary radiotracer experiments were performed by injecting 48V into rats and successively fractionating the 48V plasma proteins by gel filtration, ion-exchange chromatography and poliacrylamide gel electrophoresis. The results indicated that V in rat blood was mainly present in the serum as a V-transferrin biocomplex. It seemed reasonable to assume that a similar biocomplex could also be present in the blood of human subjects. To confirm on man the results obtained by 48V experiments on rats, human plasma proteins were isolated and separated by gel filtration on Sephadex resin and the V content in the elution fractions was determined by neutron activation followed by a rapid radiochemical separation of the induced 52V and gamma-ray spectrometry using a Ge(Li) detector. The results show that V in human plasma was effectively associated with transferrin protein, the iron transport system of the blood. A brief discussion of the results and of the determination of metal-binding components in the human body by combining biochemical techniques and neutron activation analysis is also given (author)

  20. Structural basis for iron piracy by pathogenic Neisseria.

    Science.gov (United States)

    Noinaj, Nicholas; Easley, Nicole C; Oke, Muse; Mizuno, Naoko; Gumbart, James; Boura, Evzen; Steere, Ashley N; Zak, Olga; Aisen, Philip; Tajkhorshid, Emad; Evans, Robert W; Gorringe, Andrew R; Mason, Anne B; Steven, Alasdair C; Buchanan, Susan K

    2012-03-01

    Neisseria are obligate human pathogens causing bacterial meningitis, septicaemia and gonorrhoea. Neisseria require iron for survival and can extract it directly from human transferrin for transport across the outer membrane. The transport system consists of TbpA, an integral outer membrane protein, and TbpB, a co-receptor attached to the cell surface; both proteins are potentially important vaccine and therapeutic targets. Two key questions driving Neisseria research are how human transferrin is specifically targeted, and how the bacteria liberate iron from transferrin at neutral pH. To address these questions, we solved crystal structures of the TbpA-transferrin complex and of the corresponding co-receptor TbpB. We characterized the TbpB-transferrin complex by small-angle X-ray scattering and the TbpA-TbpB-transferrin complex by electron microscopy. Our studies provide a rational basis for the specificity of TbpA for human transferrin, show how TbpA promotes iron release from transferrin, and elucidate how TbpB facilitates this process. PMID:22327295

  1. Identification of an iron-hepcidin complex

    OpenAIRE

    Farnaud, Sébastien Jean-Claude; Rapisarda, Chiara; Tam T T Bui; Drake, Alex F.; Cammack, Richard; Evans, Robert W

    2008-01-01

    Following its identification as a liver-expressed antimicrobial peptide, the hepcidin peptide was later shown to be a key player in iron homoeostasis. It is now proposed to be the 'iron hormone' which, by interacting with the iron transporter ferroportin, prevents further iron import into the circulatory system. This conclusion was reached using the corresponding synthetic peptide, emphasizing the functional importance of the mature 25-mer peptide, but omitting the possible functionality of i...

  2. Alginate-Iron Speciation and Its Effect on In Vitro Cellular Iron Metabolism

    Science.gov (United States)

    Horniblow, Richard D.; Dowle, Miriam; Iqbal, Tariq H.; Latunde-Dada, Gladys O.; Palmer, Richard E.

    2015-01-01

    Alginates are a class of biopolymers with known iron binding properties which are routinely used in the fabrication of iron-oxide nanoparticles. In addition, alginates have been implicated in influencing human iron absorption. However, the synthesis of iron oxide nanoparticles employs non-physiological pH conditions and whether nanoparticle formation in vivo is responsible for influencing cellular iron metabolism is unclear. Thus the aims of this study were to determine how alginate and iron interact at gastric-comparable pH conditions and how this influences iron metabolism. Employing a range of spectroscopic techniques under physiological conditions alginate-iron complexation was confirmed and, in conjunction with aberration corrected scanning transmission electron microscopy, nanoparticles were observed. The results infer a nucleation-type model of iron binding whereby alginate is templating the condensation of iron-hydroxide complexes to form iron oxide centred nanoparticles. The interaction of alginate and iron at a cellular level was found to decrease cellular iron acquisition by 37% (p < 0.05) and in combination with confocal microscopy the alginate inhibits cellular iron transport through extracellular iron chelation with the resulting complexes not internalised. These results infer alginate as being useful in the chelation of excess iron, especially in the context of inflammatory bowel disease and colorectal cancer where excess unabsorbed luminal iron is thought to be a driver of disease. PMID:26378798

  3. Bacterial Vaginosis

    Science.gov (United States)

    ... 586. Related Content STDs during Pregnancy Fact Sheet Pregnancy and HIV, Viral Hepatitis, and STD Prevention Pelvic Inflammatory Disease ( ... Bacterial Vaginosis (BV) Chlamydia Gonorrhea Genital Herpes Hepatitis HIV/AIDS & STDs Human Papillomavirus ... STDs See Also Pregnancy Reproductive ...

  4. Bacterial Meningitis

    Science.gov (United States)

    ... Schedules Preteen & Teen Vaccines Meningococcal Disease Sepsis Bacterial Meningitis Recommend on Facebook Tweet Share Compartir On this ... serious disease. Laboratory Methods for the Diagnosis of Meningitis This manual summarizes laboratory methods used to isolate, ...

  5. Prostatitis - bacterial

    Science.gov (United States)

    Any bacteria that can cause a urinary tract infection can cause acute bacterial prostatitis. Infections spread through sexual contact can cause prostatitis. These include chlamydia and gonorrhea . Sexually transmitted ...

  6. Bacterial Conjunctivitis

    OpenAIRE

    Köhle, Ülkü; Kükner, Şahap

    2003-01-01

    Conjunctivitis is an infection of the conjunctiva, generally characterized by irritation, itching, foreign body sensation, tearing and discharge. Bacterial conjunctivitis may be distinguished from other types of conjunctivitis by the presence of yellow–white mucopurulent discharge. It is the most common form of ocular infection all around the world. Staphylococcus species are the most common bacterial pathogenes, followed by Streptococcus pneumoniae and Haemophilus i...

  7. 49 CFR 192.275 - Cast iron pipe.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 3 2010-10-01 2010-10-01 false Cast iron pipe. 192.275 Section 192.275... Cast iron pipe. (a) Each caulked bell and spigot joint in cast iron pipe must be sealed with mechanical leak clamps. (b) Each mechanical joint in cast iron pipe must have a gasket made of a...

  8. Direct Biohydrometallurgical Extraction of Iron from Ore

    Energy Technology Data Exchange (ETDEWEB)

    T.C. Eisele

    2005-10-01

    A completely novel approach to iron extraction was investigated, based on reductive leaching of iron by anaerobic bacteria. Microorganisms were collected from an anaerobic bog where natural seepage of dissolved iron was observed. This mixed culture was used to reduce insoluble iron in a magnetite ore to the soluble ferrous (Fe{sup +2}) state. While dissolution rates were slow, concentrations of dissolved iron as high as 3487 mg/l could be reached if sufficient time was allowed. A factorial study of the effects of trace nutrients and different forms of organic matter indicated that the best dissolution rates and highest dissolved iron concentrations were achieved using soluble carbohydrate (sucrose) as the bacterial food source, and that nutrients other than nitrogen, phosphorus, potassium, sodium, and acetate were not necessary. A key factor in reaching high levels of dissolved iron was maintaining a high level of carbon dioxide in solution, since the solubility of iron carbonates increases markedly as the quantity of dissolved carbon dioxide increases. Once the iron is dissolved, it has been demonstrated that the ferrous iron can then be electroplated from solution, provided that the concentration of iron is sufficiently high and the hydrogen ion concentration is sufficiently low. However, if the leaching solution is electrolyzed directly, organic matter precipitates at the cathode along with the metallic iron. To prevent this problem, the ferrous iron should be separated from the bulk solution in a more concentrated, purified form. One route to accomplishing this is to take advantage of the change in solubility of ferrous iron as a function of carbon dioxide concentration. By cycling the concentration of carbon dioxide in solution, it is possible to produce an iron-rich concentrate that should be suitable for electrolysis. This represents the first viable hydrometallurgical method for leaching iron directly from ore and producing metallic iron.

  9. Shigella dysenteriae ShuS Promotes Utilization of Heme as an Iron Source and Protects against Heme Toxicity

    OpenAIRE

    Wyckoff, Elizabeth E.; Lopreato, Gregory F.; Tipton, Kimberly A.; Shelley M Payne

    2005-01-01

    Shigella dysenteriae serotype 1, a major cause of bacillary dysentery in humans, can use heme as a source of iron. Genes for the transport of heme into the bacterial cell have been identified, but little is known about proteins that control the fate of the heme molecule after it has entered the cell. The shuS gene is located within the heme transport locus, downstream of the heme receptor gene shuA. ShuS is a heme binding protein, but its role in heme utilization is poorly understood. In this...

  10. Structural and functional characterization of the bacterial ferrous homeostasis protein FeoA

    OpenAIRE

    Vieira, Vanessa Cristina de Carvalho

    2012-01-01

    O objectivo deste trabalho intitulado ““Structural and functional characterization of the bacterial ferrous homeostasis protein FeoA” consistiu na determinação da estrutura e função da proteína FeoA da bacteria E.coli. A principal via bacteriana de entrada do ferro ferroso é através do sistema Feo que deriva das palavras inglesas ferrous iron transport. O ferro é um elemento essencial para a maioria dos organismos participando em vias metabólicas essenciais. Os sistemas de importação ...

  11. Iron load

    Directory of Open Access Journals (Sweden)

    Filippo Cassarà

    2013-03-01

    Full Text Available Recent research addressed the main role of hepcidin in the regulation of iron metabolism. However, while this mechanism could be relevant in causing iron load in Thalassemia Intermedia and Sickle-Cell Anemia, its role in Thalassemia Major (TM is marginal. This is mainly due to the high impact of transfusional requirement into the severe increase of body iron. Moreover, the damage of iron load may be worsened by infections, as HCV hepatitis, or liver and endocrinological damage. One of the most relevant associations was found between splenectomy and increase of risk for mortality due,probably, to more severe iron load. These issues suggest as morbidity and mortality of this group of patients they do not depend only by our ability in controlling heart damage but even in preventing or treating particular infections and complications. This finding is supported by the impairment of survival curves in patients with complications different from heart damage. However, because, during recent years different direct and indirect methods to detect iron overload in patients affected by secondary hemochromatosis have been implemented, our ability to maintain under control iron load is significantly improved. Anyway, the future in iron load management remains to be able to have an iron load map of our body for targeting chelation and other medical treatment according to the single organ damage.

  12. Bacterial deposition in a parallel plate and a stagnation point flow chamber : microbial adhesion mechanisms depend on the mass transport conditions

    NARCIS (Netherlands)

    Bakker, DP; Busscher, HJ; van der Mei, HC

    2002-01-01

    Deposition onto glass in a parallel plate (PP) and in a stagnation point (SP) flow chamber of Marinobacter hydrocarbonoclasticus, Psychrobacter sp. and Halomonas pacifica, suspended in artificial seawater, was compared in order to determine the influence of methodology on bacterial adhesion mechanis

  13. Bacterial carbonatogenesis

    International Nuclear Information System (INIS)

    Several series of experiments in the laboratory as well as in natural conditions teach that the production of carbonate particles by heterotrophic bacteria follows different ways. The 'passive' carbonatogenesis is generated by modifications of the medium that lead to the accumulation of carbonate and bicarbonate ions and to the precipitation of solid particles. The 'active' carbonatogenesis is independent of the metabolic pathways. The carbonate particles are produced by ionic exchanges through the cell membrane following still poorly known mechanisms. Carbonatogenesis appears to be the response of heterotrophic bacterial communities to an enrichment of the milieu in organic matter. The active carbonatogenesis seems to start first. It is followed by the passive one which induces the growth of initially produced particles. The yield of heterotrophic bacterial carbonatogenesis and the amounts of solid carbonates production by bacteria are potentially very high as compared to autotrophic or chemical sedimentation from marine, paralic or continental waters. Furthermore, the bacterial processes are environmentally very ubiquitous; they just require organic matter enrichment. Thus, apart from purely evaporite and autotrophic ones, all Ca and/or Mg carbonates must be considered as from heterotrophic bacterial origin. By the way, the carbon of carbonates comes from primary organic matter. Such considerations ask questions about some interpretations from isotopic data on carbonates. Finally, bacterial heterotrophic carbonatogenesis appears as a fundamental phase in the relationships between atmosphere and lithosphere and in the geo-biological evolution of Earth. (author)

  14. Iron deficiency

    DEFF Research Database (Denmark)

    Schou, Morten; Bosselmann, Helle; Gaborit, Freja;

    2015-01-01

    BACKGROUND: Both iron deficiency (ID) and cardiovascular biomarkers are associated with a poor outcome in heart failure (HF). The relationship between different cardiovascular biomarkers and ID is unknown, and the true prevalence of ID in an outpatient HF clinic is probably overlooked. OBJECTIVES...... understand iron metabolism in elderly HF patients....

  15. Iron, hepcidin and the metal connection.

    Directory of Open Access Journals (Sweden)

    Olivier eLoréal

    2014-06-01

    Full Text Available Identification of new players in iron metabolism, such as hepcidin, which regulates ferroportin and divalent metal transporter 1 expression, has improved our knowledge of iron metabolism and iron-related diseases. However, from both experimental data and clinical findings, iron-related proteins appear to also be involved in the metabolism of other metals, especially divalent cations. Reports have demonstrated that some metals may affect, directly or indirectly, the expression of proteins involved in iron metabolism. Throughout their lives, individuals are exposed to various metals during personal and/or occupational activities. Therefore, better knowledge of the connections between iron and other metals could improve our understanding of iron-related diseases, especially the variability in phenotypic expression, as well as a variety of diseases in which iron metabolism is secondarily affected. Controlling the metabolism of other metals could represent a promising innovative therapeutic approach.

  16. Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain

    DEFF Research Database (Denmark)

    Neal, Andrew L; Geraki, Kalotina; Borg, Søren; Quinn, Paul; Mosselsmans, J Fred; Brinch-Pedersen, Henrik; Shewry, Peter R

    2013-01-01

    We have used synchrotron-based X-ray fluorescence and absorption techniques to establish both metal distribution and complexation in mature wheat grains. In planta, extended X-ray absorption fine structure (EXAFS) spectroscopy reveals iron phytate and zinc phytate structures in aleurone cells and...... evidence of modified complexation of both metals in transgenic grain overexpressing wheat ferritin. For zinc, there is a consistent doubling of the number of complexing phosphorus atoms. Although there is some EXAFS evidence for iron phytate in ferritin-expressing grain, there is also evidence of a...... in modified aleurone cells in the transfer region of the grain: iron is coordinated octahedrally by six oxygen atoms and fewer than two phosphorous atoms. Zinc is coordinated tetrahedrally by four oxygen atoms and approximately 1.5 phosphorus atoms in an asymmetric coordination shell. We also present...

  17. Iron deficiency in the tropics.

    Science.gov (United States)

    Fleming, A F

    1982-06-01

    Iron in food is classified as belonging to the haem pool, the nonhaem pool, and extraneous sources. Haem iron is derived from vegetable and animal sources with varying bioavailability. Hookworm infestation of the intestinal tract affects 450 million people in the tropics. Schistosoma mansoni caused blood loss in 7 Egyptian patients of 7.5- 25.9 ml/day which is equivalent to a daily loss of iron of .6-7.3 mg daily urinary loss of iron in 9 Egyptian patients. Trichuris trichiura infestation by whipworm is widespread in children with blood loss of 5 ml/day/worm. The etiology of anemia in children besides iron deficiency includes malaria, bacterial or viral infections, folate deficiency and sickle-cell disease. Severe infections cause profound iron-deficiency anemia in children in central American and Malaysia. Plasmodium falciparum malaria-induced anaemia in tropical Africa lowers the mean haemoglobin concentration in the population by 2 g/dI, causing profound anaemia in some. The increased risk of premature delivery, low birthweight, fetal abnormalities, and fetal death is directly related to the degree of maternal anemia. Perinatal mortality was reduced from 38 to 4% in treated anemic mothers. Mental performance was significantly lower in anemic school children and improved after they received iron. Supplements of iron, soy-protein, calcium, and vitamins given to villagers with widespread malnutrition, iron deficiency, and hookworm infestation in Colombia reduced enteric infections in children. Severe iron-deficiency anemia was treated in adults in northern Nigeria by daily in Ferastral 10 ml, which is equivalent to 500 mg of iron per day. Choloroquine, folic acid, rephenium hydroxynaphthoate, and tetrachlorethylene treat adults with severe iron deficiency from hookworm infestation in rural tropical Africa. Blood transfusion is indicated if the patient is dying of anaemia or is pregnant with a haemoglobin concentration 6 gm/dl. In South East Asia, mg per day

  18. Iron Regulatory Proteins Control a Mucosal Block to Intestinal Iron Absorption

    Directory of Open Access Journals (Sweden)

    Bruno Galy

    2013-03-01

    Full Text Available Mammalian iron metabolism is regulated systemically by the hormone hepcidin and cellularly by iron regulatory proteins (IRPs that orchestrate a posttranscriptional regulatory network. Through ligand-inducible genetic ablation of both IRPs in the gut epithelium of adult mice, we demonstrate that IRP deficiency impairs iron absorption and promotes mucosal iron retention via a ferritin-mediated “mucosal block.” We show that IRP deficiency does not interfere with intestinal sensing of body iron loading and erythropoietic iron need, but rather alters the basal expression of the iron-absorption machinery. IRPs thus secure sufficient iron transport across absorptive enterocytes by restricting the ferritin “mucosal block” and define a basal set point for iron absorption upon which IRP-independent systemic regulatory inputs are overlaid.

  19. Iron biomineralization by anaerobic neutrophilic iron-oxidizing bacteria

    Science.gov (United States)

    Miot, Jennyfer; Benzerara, Karim; Morin, Guillaume; Kappler, Andreas; Bernard, Sylvain; Obst, Martin; Férard, Céline; Skouri-Panet, Fériel; Guigner, Jean-Michel; Posth, Nicole; Galvez, Matthieu; Brown, Gordon E., Jr.; Guyot, François

    2009-02-01

    Minerals formed by bio-oxidation of ferrous iron (Fe(II)) at neutral pH, their association with bacterial ultrastructures as well as their impact on the metabolism of iron-oxidizing bacteria remain poorly understood. Here, we investigated iron biomineralization by the anaerobic nitrate-dependent iron-oxidizing bacterium Acidovorax sp. strain BoFeN1 in the presence of dissolved Fe(II) using electron microscopy and Scanning Transmission X-ray Microscopy (STXM). All detected minerals consisted mainly of amorphous iron phosphates, but based on their morphology and localization, three types of precipitates could be discriminated: (1) mineralized filaments at distance from the cells, (2) globules of 100 ± 25 nm in diameter, at the cell surface and (3) a 40-nm thick mineralized layer within the periplasm. All of those phases were shown to be intimately associated with organic molecules. Periplasmic encrustation was accompanied by an accumulation of protein moieties. In the same way, exopolysaccharides were associated with the extracellular mineralized filaments. The evolution of cell encrustation was followed by TEM over the time course of a culture: cell encrustation proceeded progressively, with rapid precipitation in the periplasm (in a few tens of minutes), followed by the formation of surface-bound globules. Moreover, we frequently observed an asymmetric mineral thickening at the cell poles. In parallel, the evolution of iron oxidation was quantified by STXM: iron both contained in the bacteria and in the extracellular precipitates reached complete oxidation within 6 days. While a progressive oxidation of Fe in the bacteria and in the medium could be observed, spatial redox (oxido-reduction state) heterogeneities were detected at the cell poles and in the extracellular precipitates after 1 day. All these findings provide new information to further the understanding of molecular processes involved in iron biomineralization by anaerobic iron-oxidizing bacteria and

  20. Identification and characterization of Cronobacter iron acquisition systems.

    Science.gov (United States)

    Grim, C J; Kothary, M H; Gopinath, G; Jarvis, K G; Beaubrun, J Jean-Gilles; McClelland, M; Tall, B D; Franco, A A

    2012-09-01

    Cronobacter spp. are emerging pathogens that cause severe infantile meningitis, septicemia, or necrotizing enterocolitis. Contaminated powdered infant formula has been implicated as the source of Cronobacter spp. in most cases, but questions still remain regarding the natural habitat and virulence potential for each strain. The iron acquisition systems in 231 Cronobacter strains isolated from different sources were identified and characterized. All Cronobacter spp. have both the Feo and Efe systems for acquisition of ferrous iron, and all plasmid-harboring strains (98%) have the aerobactin-like siderophore, cronobactin, for transport of ferric iron. All Cronobacter spp. have the genes encoding an enterobactin-like siderophore, although it was not functional under the conditions tested. Furthermore, all Cronobacter spp. have genes encoding five receptors for heterologous siderophores. A ferric dicitrate transport system (fec system) is encoded specifically by a subset of Cronobacter sakazakii and C. malonaticus strains, of which a high percentage were isolated from clinical samples. Phylogenetic analysis confirmed that the fec system is most closely related to orthologous genes present in human-pathogenic bacterial strains. Moreover, all strains of C. dublinensis and C. muytjensii encode two receptors, FcuA and Fct, for heterologous siderophores produced by plant pathogens. Identification of putative Fur boxes and expression of the genes under iron-depleted conditions revealed which genes and operons are components of the Fur regulon. Taken together, these results support the proposition that C. sakazakii and C. malonaticus may be more associated with the human host and C. dublinensis and C. muytjensii with plants. PMID:22706064

  1. Bacterial Adhesion & Blocking Bacterial Adhesion

    DEFF Research Database (Denmark)

    Vejborg, Rebecca Munk

    2008-01-01

    parameters, which influence the transition from a planktonic lifestyle to a sessile lifestyle, have been studied. Protein conditioning film formation was found to influence bacterial adhesion and subsequent biofilm formation considerable, and an aqueous extract of fish muscle tissue was shown to...... tract to the microbial flocs in waste water treatment facilities. Microbial biofilms may however also cause a wide range of industrial and medical problems, and have been implicated in a wide range of persistent infectious diseases, including implantassociated microbial infections. Bacterial adhesion is...... the first committing step in biofilm formation, and has therefore been intensely scrutinized. Much however, still remains elusive. Bacterial adhesion is a highly complex process, which is influenced by a variety of factors. In this thesis, a range of physico-chemical, molecular and environmental...

  2. Intramolecular cross-linking in a bacterial homolog of mammalian SLC6 neurotransmitter transporters suggests an evolutionary conserved role of transmembrane segments 7 and 8

    DEFF Research Database (Denmark)

    Kniazeff, Julie; Loland, Claus Juul; Goldberg, Naomi;

    2005-01-01

    The extracellular concentration of the neurotransmitters dopamine, serotonin, norepinephrine, GABA and glycine is tightly controlled by plasma membrane transporters belonging to the SLC6 gene family. A very large number of putative transport proteins with a remarkable homology to the SLC6...

  3. Bacterial lipases

    NARCIS (Netherlands)

    Jaeger, Karl-Erich; Ransac, Stéphane; Dijkstra, Bauke W.; Colson, Charles; Heuvel, Margreet van; Misset, Onno

    1994-01-01

    Many different bacterial species produce lipases which hydrolyze esters of glycerol with preferably long-chain fatty acids. They act at the interface generated by a hydrophobic lipid substrate in a hydrophilic aqueous medium. A characteristic property of lipases is called interfacial activation, mea

  4. Bacterial Ecology

    DEFF Research Database (Denmark)

    Fenchel, Tom

    2011-01-01

    Bacterial ecology is concerned with the interactions between bacteria and their biological and nonbiological environments and with the role of bacteria in biogeochemical element cycling. Many fundamental properties of bacteria are consequences of their small size. Thus, they can efficiently exploit...

  5. Mechanistic and regulatory aspects of intestinal iron absorption

    OpenAIRE

    Gulec, Sukru; Anderson, Gregory J.; Collins, James F.

    2014-01-01

    Iron is an essential trace mineral that plays a number of important physiological roles in humans, including oxygen transport, energy metabolism, and neurotransmitter synthesis. Iron absorption by the proximal small bowel is a critical checkpoint in the maintenance of whole-body iron levels since, unlike most other essential nutrients, no regulated excretory systems exist for iron in humans. Maintaining proper iron levels is critical to avoid the adverse physiological consequences of either l...

  6. Native iron

    DEFF Research Database (Denmark)

    Brooks, Charles Kent

    2015-01-01

    We live in an oxidized world: oxygen makes up 22 percent of the atmosphere and by reacting with organic matter produces most of our energy, including the energy our bodies use to function: breathe, think, move, etc. It has not always been thus. Originally the Earth, in common with most of the Solar...... System, was reduced. The oxidized outer layers of the Earth have formed by two processes. Firstly, water is decomposed to oxygen and hydrogen by solar radiation in the upper parts of the atmosphere, the light hydrogen diffusing to space, leaving oxygen behind. Secondly, plants, over the course of...... situation unique in the Solar System. In such a world, iron metal is unstable and, as we all know, oxidizes to the ferric iron compounds we call 'rust'. If we require iron metal it must be produced at high temperatures by reacting iron ore, usually a mixture of ferrous (Fe2+) and ferric (Fe3+) oxides (Fe2O3...

  7. [Bacterial vaginosis].

    Science.gov (United States)

    Romero Herrero, Daniel; Andreu Domingo, Antonia

    2016-07-01

    Bacterial vaginosis (BV) is the main cause of vaginal dysbacteriosis in the women during the reproductive age. It is an entity in which many studies have focused for years and which is still open for discussion topics. This is due to the diversity of microorganisms that cause it and therefore, its difficult treatment. Bacterial vaginosis is probably the result of vaginal colonization by complex bacterial communities, many of them non-cultivable and with interdependent metabolism where anaerobic populations most likely play an important role in its pathogenesis. The main symptoms are an increase of vaginal discharge and the unpleasant smell of it. It can lead to serious consequences for women, such as an increased risk of contracting sexually transmitted infections including human immunodeficiency virus and upper genital tract and pregnancy complications. Gram stain is the gold standard for microbiological diagnosis of BV, but can also be diagnosed using the Amsel clinical criteria. It should not be considered a sexually transmitted disease but it is highly related to sex. Recurrence is the main problem of medical treatment. Apart from BV, there are other dysbacteriosis less characterized like aerobic vaginitis of which further studies are coming slowly but are achieving more attention and consensus among specialists. PMID:27474242

  8. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

    Energy Technology Data Exchange (ETDEWEB)

    Kozubal, Mark; Romine, Margaret F.; Jennings, Ryan; Jay, Z.; Tringe, Susannah G.; Rusch, Douglas B.; Beam, Jake; McCue, Lee Ann; Inskeep, William P.

    2013-03-01

    Geothermal systems in Yellowstone National Park (YNP) provide an outstanding opportunity to understand the origin and evolution of metabolic processes necessary for life in extreme environments including low pH, high temperature, low oxygen and elevated concentrations of reduced iron. Previous phylogenetic studies of acidic ferric iron mats from YNP have revealed considerable diversity of uncultivated and undescribed archaea. The goal of this study was to obtain replicate de novo genome assemblies for a dominant archaeal population inhabiting acidic iron oxide mats in YNP. Detailed analysis of conserved ribosomal and informational processing genes indicate that the replicate assemblies represent a new phylum-level lineage referred to here as 'novel archaeal group 1 (NAG1)'. The NAG1 organisms contain pathways necessary for the catabolism of peptides and complex carbohydrates as well as a bacterial-like Form I CO dehydrogenase complex likely used for energy conservation. Moreover, this novel population contains genes involved in metabolism of oxygen including a Type A heme copper oxidase, a bd-type terminal oxidase and a putative oxygen sensing protoglobin. NAG1 has a variety of unique bacterial-like cofactor biosynthesis and transport genes and a Type3-like CRISPR system. Discovery of NAG1 is critical to our understanding of microbial community structure and function in extant thermophilic iron mats of YNP, and will provide insight regarding the evolution of Archaea in early Earth environments that may have important analogues active in YNP today.

  9. Mechanisms of heme iron absorption: Current questions and controversies

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Iron is a critical micronutrient, and iron derived from heme contributes a large proportion of the total iron absorbed in a typical Western diet. Heine iron is absorbed by different mechanisms than non-heine iron, but despite considerable study over many years these mechanisms remain poorly understood. This review provides an overview of the importance of heme iron in the diet and discusses the two prevailing hypotheses of heine absorption; namely receptor mediated endocytosis of heme, and direct transport into the intestinal enterocyte by recently discovered heine transporters. A specific emphasis is placed on the questions surrounding the site of heme catabolism and the identity of the enzyme that performs this task. Additionally, we present the hypothesis that a nonheme iron transport protein may be required for heine iron absorption and discuss the experiences of our laboratory in examining this hypothesis.

  10. METABOLISM OF IRON STORES

    OpenAIRE

    Saito, Hiroshi

    2014-01-01

    ABSTRACT Remarkable progress was recently achieved in the studies on molecular regulators of iron metabolism. Among the main regulators, storage iron, iron absorption, erythropoiesis and hepcidin interact in keeping iron homeostasis. Diseases with gene-mutations resulting in iron overload, iron deficiency, and local iron deposition have been introduced in relation to the regulators of storage iron metabolism. On the other hand, the research on storage iron metabolism has not advanced since th...

  11. Modelling the long-term evolution of groundwater's quality in a flooded iron-ore mine using a reactive transport pipe network model

    OpenAIRE

    Vaute, Laurent; Le Pape, Pierre; Collon-Drouaillet, Pauline; Fabriol, Robert

    2010-01-01

    Over the past 25 years, underground mine flooding in the lorraine iron Basin (France) has resulted in a high concentration of dissolved sulphate and have made the water unsuitable for human consumption. this problematic issue has led to the development of numerical tools to support waterresource management in mining contexts. as water flows mainly in galleries and collapsed zones, we consider the flooded mine as a network of pipes and tanks. the software used for simulating flow andreactive t...

  12. Extracellular Norepinephrine, Norepinephrine Receptor and Transporter Protein and mRNA Levels Are Differentially Altered in the Developing Rat Brain Due to Dietary Iron Deficiency and Manganese Exposure

    OpenAIRE

    Anderson, Joel G.; Fordahl, Steven C.; Cooney, Paula T.; Weaver, Tara L.; Colyer, Christa L.; Erikson, Keith M.

    2009-01-01

    Manganese (Mn) is an essential trace element, but overexposure is characterized by Parkinson’s like symptoms in extreme cases. Previous studies have shown Mn accumulation is exacerbated by dietary iron deficiency (ID) and disturbances in norepinephrine (NE) have been reported. Because behaviors associated with Mn neurotoxicity are complex, the goal of this study was to examine the effects of Mn exposure and ID-associated Mn accumulation on NE uptake in synaptosomes, extracellular NE concentra...

  13. Iron, transferrin and myelinogenesis

    Science.gov (United States)

    Sergeant, C.; Vesvres, M. H.; Devès, G.; Baron, B.; Guillou, F.

    2003-09-01

    Transferrin (Tf), the iron binding protein of vertebrates serum, is known to be synthesized by oligodendrocytes (Ols) in the central nervous system. It has been postulated that Tf is involved in Ols maturation and myelinogenesis. This link is particularly important in the understanding of a severe human pathology: the multiple sclerosis, which remains without efficient treatment. We generated transgenic mice containing the complete human Tf gene and extensive regulatory sequences from the 5 ' and 3 ' untranslated regions that specifically overexpress Tf in Ols. Brain cytoarchitecture of the transgenic mice appears to be normal in all brain regions examined, total myelin content is increased by 30% and motor coordination is significantly improved when compared with non-transgenic littermates. Tf role in the central nervous system may be related to its affinity for metallic cations. Normal and transgenic mice were used for determination of trace metals (iron, copper and zinc) and minerals (potassium and calcium) concentration in cerebellum and corpus callosum. The freeze-dried samples were prepared to allow proton-induced X-ray emission and Rutherford backscattering spectrometry analyses with the nuclear microprobe in Bordeaux. Preliminary results were obtained and carbon distribution was revealed as a very good analysis to distinguish precisely the white matter region. A comparison of metallic and mineral elements contents in brain between normal and transgenic mice shows that iron, copper and zinc levels remained constant. This result provides evidence that effects of Tf overexpression in the brain do not solely relate to iron transport.

  14. Gallium and its competing roles with iron in biological systems.

    Science.gov (United States)

    Chitambar, Christopher R

    2016-08-01

    Gallium, a group IIIa metal, shares chemical properties with iron. Studies have shown that gallium-based compounds have potential therapeutic activity against certain cancers and infectious microorganisms. By functioning as an iron mimetic, gallium perturbs iron-dependent proliferation processes in tumor cells. Gallium's action on iron homeostasis leads to disruption of ribonucleotide reductase, mitochondrial function, and the regulation of transferrin receptor and ferritin. In addition, gallium nitrate stimulates an increase in mitochondrial reactive oxygen species in cells which triggers downstream upregulation of metallothionein and hemoxygenase-1. Gallium's anti-infective activity against bacteria and fungi results from disruption of microbial iron utilization through mechanisms which include gallium binding to siderophores and downregulation of bacterial iron uptake. Gallium compounds lack cross-resistance to conventional chemotherapeutic drugs and antibiotics thus making them attractive agents for drug development. This review will focus on the mechanisms of action of gallium with emphasis on its interaction with iron and iron proteins. PMID:27150508

  15. Iron-Tolerant Cyanobacteria: Ecophysiology and Fingerprinting

    Science.gov (United States)

    Brown, I. I.; Mummey, D.; Lindsey, J.; McKay, D. S.

    2006-01-01

    Although the iron-dependent physiology of marine and freshwater cyanobacterial strains has been the focus of extensive study, very few studies dedicated to the physiology and diversity of cyanobacteria inhabiting iron-depositing hot springs have been conducted. One of the few studies that have been conducted [B. Pierson, 1999] found that cyanobacterial members of iron depositing bacterial mat communities might increase the rate of iron oxidation in situ and that ferrous iron concentrations up to 1 mM significantly stimulated light dependent consumption of bicarbonate, suggesting a specific role for elevated iron in photosynthesis of cyanobacteria inhabiting iron-depositing hot springs. Our recent studies pertaining to the diversity and physiology of cyanobacteria populating iron-depositing hot springs in Great Yellowstone area (Western USA) indicated a number of different isolates exhibiting elevated tolerance to Fe(3+) (up to 1 mM). Moreover, stimulation of growth was observed with increased Fe(3+) (0.02-0.4 mM). Molecular fingerprinting of unialgal isolates revealed a new cyanobacterial genus and species Chroogloeocystis siderophila, an unicellular cyanobacterium with significant EPS sheath harboring colloidal Fe(3+) from iron enriched media. Our preliminary data suggest that some filamentous species of iron-tolerant cyanobacteria are capable of exocytosis of iron precipitated in cytoplasm. Prior to 2.4 Ga global oceans were likely significantly enriched in soluble iron [Lindsay et al, 2003], conditions which are not conducive to growth of most contemporary oxygenic cyanobacteria. Thus, iron-tolerant CB may have played important physiological and evolutionary roles in Earths history.

  16. Phototrophic oxidation of ferrous iron by a Rhodomicrobium vannielii strain

    OpenAIRE

    Heising, Silke; Schink, Bernhard

    1998-01-01

    Oxidation of ferrous iron was studied with the anaerobic phototrophic bacterial strain BS-1. Based on morphology, substrate utilization patterns, arrangement of intracytoplasmic membranes and the in vivo absorption spectrum, this strain was assigned to the known species Rhodomicrobium vannielii. Also, the type strain of this species oxidized ferrous iron in the light. Phototrophic growth of strain BS-1 with ferrous iron as electron donor was stimulated by the presence of acetate or succinate ...

  17. Iron oxyhydroxide mineralization on microbial extracellular polysaccharides

    Energy Technology Data Exchange (ETDEWEB)

    Chan, Clara S.; Fakra, Sirine C.; Edwards, David C.; Emerson, David; Banfield, Jillian F.

    2010-06-22

    Iron biominerals can form in neutral pH microaerophilic environments where microbes both catalyze iron oxidation and create polymers that localize mineral precipitation. In order to classify the microbial polymers that influence FeOOH mineralogy, we studied the organic and mineral components of biominerals using scanning transmission X-ray microscopy (STXM), micro X-ray fluorescence ({mu}XRF) microscopy, and high-resolution transmission electron microscopy (HRTEM). We focused on iron microbial mat samples from a creek and abandoned mine; these samples are dominated by iron oxyhydroxide-coated structures with sheath, stalk, and filament morphologies. In addition, we characterized the mineralized products of an iron-oxidizing, stalk-forming bacterial culture isolated from the mine. In both natural and cultured samples, microbial polymers were found to be acidic polysaccharides with carboxyl functional groups, strongly spatially correlated with iron oxyhydroxide distribution patterns. Organic fibrils collect FeOOH and control its recrystallization, in some cases resulting in oriented crystals with high aspect ratios. The impact of polymers is particularly pronounced as the materials age. Synthesis experiments designed to mimic the biomineralization processes show that the polysaccharide carboxyl groups bind dissolved iron strongly but release it as mineralization proceeds. Our results suggest that carboxyl groups of acidic polysaccharides are produced by different microorganisms to create a wide range of iron oxyhydroxide biomineral structures. The intimate and potentially long-term association controls the crystal growth, phase, and reactivity of iron oxyhydroxide nanoparticles in natural systems.

  18. Iron and Your Child

    Science.gov (United States)

    ... Story" 5 Things to Know About Zika & Pregnancy Iron and Your Child KidsHealth > For Parents > Iron and ... enough iron in their daily diets. How Much Iron Do Kids Need? Kids require different amounts of ...

  19. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... have enough iron in your body. Low iron levels usually are due to blood loss, poor diet, ... iron supplements and multivitamins to improve her iron levels. Susan also made changes to her diet, such ...

  20. Transcriptional response of Leptospira interrogans to iron limitation and characterization of a PerR homolog

    Science.gov (United States)

    Leptospira interrogans is the causative agent of leptospirosis, a zoonosis of global significance. Iron is essential for growth of most bacterial species. Since availability of iron is low in the host, pathogens have evolved complex iron acquisition mechanisms to survive and establish infection. In ...

  1. Influence of Atmospheric Processes on the Solubility and Composition of Iron in Saharan Dust.

    Science.gov (United States)

    Longo, Amelia F; Feng, Yan; Lai, Barry; Landing, William M; Shelley, Rachel U; Nenes, Athanasios; Mihalopoulos, Nikolaos; Violaki, Kalliopi; Ingall, Ellery D

    2016-07-01

    Aerosol iron was examined in Saharan dust plumes using a combination of iron near-edge X-ray absorption spectroscopy and wet-chemical techniques. Aerosol samples were collected at three sites located in the Mediterranean, the Atlantic, and Bermuda to characterize iron at different atmospheric transport lengths and time scales. Iron(III) oxides were a component of aerosols at all sampling sites and dominated the aerosol iron in Mediterranean samples. In Atlantic samples, iron(II and III) sulfate, iron(III) phosphate, and iron(II) silicates were also contributors to aerosol composition. With increased atmospheric transport time, iron(II) sulfates are found to become more abundant, aerosol iron oxidation state became more reduced, and aerosol acidity increased. Atmospheric processing including acidic reactions and photoreduction likely influence the form of iron minerals and oxidation state in Saharan dust aerosols and contribute to increases in aerosol-iron solubility. PMID:27286140

  2. Immunity to plant pathogens and iron homeostasis.

    Science.gov (United States)

    Aznar, Aude; Chen, Nicolas W G; Thomine, Sebastien; Dellagi, Alia

    2015-11-01

    Iron is essential for metabolic processes in most living organisms. Pathogens and their hosts often compete for the acquisition of this nutrient. However, iron can catalyze the formation of deleterious reactive oxygen species. Hosts may use iron to increase local oxidative stress in defense responses against pathogens. Due to this duality, iron plays a complex role in plant-pathogen interactions. Plant defenses against pathogens and plant response to iron deficiency share several features, such as secretion of phenolic compounds, and use common hormone signaling pathways. Moreover, fine tuning of iron localization during infection involves genes coding iron transport and iron storage proteins, which have been shown to contribute to immunity. The influence of the plant iron status on the outcome of a given pathogen attack is strongly dependent on the nature of the pathogen infection strategy and on the host species. Microbial siderophores emerged as important factors as they have the ability to trigger plant defense responses. Depending on the plant species, siderophore perception can be mediated by their strong iron scavenging capacity or possibly via specific recognition as pathogen associated molecular patterns. This review highlights that iron has a key role in several plant-pathogen interactions by modulating immunity. PMID:26475190

  3. Route and Regulation of Zinc, Cadmium, and Iron Transport in Rice Plants (Oryza sativa L.) during Vegetative Growth and Grain Filling: Metal Transporters, Metal Speciation, Grain Cd Reduction and Zn and Fe Biofortification

    OpenAIRE

    Tadakatsu Yoneyama; Satoru Ishikawa; Shu Fujimaki

    2015-01-01

    Zinc (Zn) and iron (Fe) are essential but are sometimes deficient in humans, while cadmium (Cd) is toxic if it accumulates in the liver and kidneys at high levels. All three are contained in the grains of rice, a staple cereal. Zn and Fe concentrations in rice grains harvested under different levels of soil/hydroponic metals are known to change only within a small range, while Cd concentrations show greater changes. To clarify the mechanisms underlying such different metal contents, we synt...

  4. Iron and iron derived radicals

    International Nuclear Information System (INIS)

    We have discussed some reactions of iron and iron-derived oxygen radicals that may be important in the production or treatment of tissue injury. Our conclusions challenge, to some extent, the usual lines of thought in this field of research. Insofar as they are born out by subsequent developments, the lessons they teach are two: Think fast! Think small! In other words, think of the many fast reactions that can rapidly alter the production and fate of highly reactive intermediates, and when considering the impact of competitive reactions on such species, think how they affect the microenvironment (on the molecular scale) ''seen'' by each reactive molecule. 21 refs., 3 figs., 1 tab

  5. Bacterial hydrodynamics

    CERN Document Server

    Lauga, Eric

    2015-01-01

    Bacteria predate plants and animals by billions of years. Today, they are the world's smallest cells yet they represent the bulk of the world's biomass, and the main reservoir of nutrients for higher organisms. Most bacteria can move on their own, and the majority of motile bacteria are able to swim in viscous fluids using slender helical appendages called flagella. Low-Reynolds-number hydrodynamics is at the heart of the ability of flagella to generate propulsion at the micron scale. In fact, fluid dynamic forces impact many aspects of bacteriology, ranging from the ability of cells to reorient and search their surroundings to their interactions within mechanically and chemically-complex environments. Using hydrodynamics as an organizing framework, we review the biomechanics of bacterial motility and look ahead to future challenges.

  6. Southern Ocean Iron Experiment (SOFex)

    Energy Technology Data Exchange (ETDEWEB)

    Coale, Kenneth H.

    2005-07-28

    The Southern Ocean Iron Experiment (SOFeX) was an experiment decades in the planning. It's implementation was among the most complex ship operations that SIO has been involved in. The SOFeX field expedition was successful in creating and tracking two experimentally enriched areas of the Southern Ocean, one characterized by low silicic acid, one characterized by high silicic acid. Both experimental sites were replete with abundant nitrate. About 100 scientists were involved overall. The major findings of this study were significant in several ways: (1) The productivity of the southern ocean is limited by iron availability. (2) Carbon uptake and flux is therefore controlled by iron availability (3) In spite of low silicic acid, iron promotes non-silicious phytoplankton growth and the uptake of carbon dioxide. (4) The transport of fixed carbon from the surface layers proceeds with a C:N ratio that would indicate differential remineralization of nitrogen at shallow depths. (5) These finding have major implications for modeling of carbon export based on nitrate utilization. (6) The general results of the experiment indicate that, beyond other southern ocean enrichment experiments, iron inputs have a much wider impact of productivity and carbon cycling than previously demonstrated. Scientific presentations: Coale, K., Johnson, K, Buesseler, K., 2002. The SOFeX Group. Eos. Trans. AGU 83(47) OS11A-0199. Coale, K., Johnson, K. Buesseler, K., 2002. SOFeX: Southern Ocean Iron Experiments. Overview and Experimental Design. Eos. Trans. AGU 83 (47) OS22D-01. Buesseler, K.,et al. 2002. Does Iron Fertilization Enhance Carbon Sequestration? Particle flux results from the Southern Ocean Iron Experiment. Eos. Trans. AGU 83 (47), OS22D-09. Johnson, K. et al. 2002. Open Ocean Iron Fertilization Experiments From IronEx-I through SOFeX: What We Know and What We Still Need to Understand. Eos. Trans. AGU 83 (47), OS22D-12. Coale, K. H., 2003. Carbon and Nutrient Cycling During the

  7. Structure of a Bacterial Cell Surface Decaheme Electron Conduit

    Energy Technology Data Exchange (ETDEWEB)

    Clarke, Thomas A.; Edwards, Marcus; Gates, Andrew J.; Hall, Andrea; White, Gaye; Bradley, Justin; Reardon, Catherine L.; Shi, Liang; Beliaev, Alex S.; Marshall, Matthew J.; Wang, Zheming; Watmough, Nicholas; Fredrickson, Jim K.; Zachara, John M.; Butt, Julea N.; Richardson, David J.

    2011-05-23

    Some bacterial species are able to utilize extracellular mineral forms of iron and manganese as respiratory electron acceptors. In Shewanella oneidensis this involves deca-heme cytochromes that are located on the bacterial cell surface at the termini of trans-outermembrane (OM) electron transfer conduits. The cell surface cytochromes can potentially play multiple roles in mediating electron transfer directly to insoluble electron sinks, catalyzing electron exchange with flavin electron shuttles or participating in extracellular inter-cytochrome electron exchange along ‘nanowire’ appendages. We present a 3.2 Å crystal structure of one of these deca-heme cytochromes, MtrF, that allows the spatial organization of the ten hemes to be visualized for the first time. The hemes are organized across four domains in a unique crossed conformation, in which a staggered 65 Å octa-heme chain transects the length of the protein and is bisected by a planar 45 Å tetra-heme chain that connects two extended Greek key split β-barrel domains. The structure provides molecular insight into how reduction of insoluble substrate (e.g. minerals), soluble substrates (e.g. flavins) and cytochrome redox partners might be possible in tandem at different termini of a trifurcated electron transport chain on the cell surface.

  8. Metal mobilization by iron- and sulfur-oxidizing bacteria in a multiple extreme mine tailings in the Atacama Desert, Chile.

    Science.gov (United States)

    Korehi, H; Blöthe, M; Sitnikova, M A; Dold, B; Schippers, A

    2013-03-01

    The marine shore sulfidic mine tailings dump at the Chañaral Bay in the Atacama Desert, northern Chile, is characterized by extreme acidity, high salinity, and high heavy metals concentrations. Due to pyrite oxidation, metals (especially copper) are mobilized under acidic conditions and transported toward the tailings surface and precipitate as secondary minerals (Dold, Environ. Sci. Technol. 2006, 40, 752-758.). Depth profiles of total cell counts in this almost organic-carbon free multiple extreme environment showed variable numbers with up to 10(8) cells g(-1) dry weight for 50 samples at four sites. Real-time PCR quantification and bacterial 16S rRNA gene diversity analysis via clone libraries revealed a dominance of Bacteria over Archaea and the frequent occurrence of the acidophilic iron(II)- and sulfur-oxidizing and iron(III)-reducing genera Acidithiobacillus, Alicyclobacillus, and Sulfobacillus. Acidophilic chemolithoautotrophic iron(II)-oxidizing bacteria were also frequently found via most-probable-number (MPN) cultivation. Halotolerant iron(II)-oxidizers in enrichment cultures were active at NaCl concentrations up to 1 M. Maximal microcalorimetrically determined pyrite oxidation rates coincided with maxima of the pyrite content, total cell counts, and MPN of iron(II)-oxidizers. These findings indicate that microbial pyrite oxidation and metal mobilization preferentially occur in distinct tailings layers at high salinity. Microorganisms for biomining with seawater salt concentrations obviously exist in nature. PMID:23373853

  9. A virtual high-throughput screening approach to the discovery of novel inhibitors of the bacterial leucine transporter, LeuT

    DEFF Research Database (Denmark)

    Simmons, Katie J; Gotfryd, Kamil; Billesbølle, Christian B;

    2013-01-01

    Abstract Membrane proteins are intrinsically involved in both human and pathogen physiology, and are the target of 60% of all marketed drugs. During the past decade, advances in the studies of membrane proteins using X-ray crystallography, electron microscopy and NMR-based techniques led to the e...... this is a virtual high-throughput screening (vHTS) technique initially developed for soluble proteins. This paper describes application of this technique to the discovery of inhibitors of the leucine transporter (LeuT), a member of the neurotransmitter:sodium symporter (NSS) family....

  10. Iron acquisition in Bacillus cereus: the roles of IlsA and bacillibactin in exogenous ferritin iron mobilization.

    Directory of Open Access Journals (Sweden)

    Diego Segond

    2014-02-01

    Full Text Available In host-pathogen interactions, the struggle for iron may have major consequences on the outcome of the disease. To overcome the low solubility and bio-availability of iron, bacteria have evolved multiple systems to acquire iron from various sources such as heme, hemoglobin and ferritin. The molecular basis of iron acquisition from heme and hemoglobin have been extensively studied; however, very little is known about iron acquisition from host ferritin, a 24-mer nanocage protein able to store thousands of iron atoms within its cavity. In the human opportunistic pathogen Bacillus cereus, a surface protein named IlsA (Iron-regulated leucine rich surface protein type A binds heme, hemoglobin and ferritin in vitro and is involved in virulence. Here, we demonstrate that IlsA acts as a ferritin receptor causing ferritin aggregation on the bacterial surface. Isothermal titration calorimetry data indicate that IlsA binds several types of ferritins through direct interaction with the shell subunits. UV-vis kinetic data show a significant enhancement of iron release from ferritin in the presence of IlsA indicating for the first time that a bacterial protein might alter the stability of the ferritin iron core. Disruption of the siderophore bacillibactin production drastically reduces the ability of B. cereus to utilize ferritin for growth and results in attenuated bacterial virulence in insects. We propose a new model of iron acquisition in B. cereus that involves the binding of IlsA to host ferritin followed by siderophore assisted iron uptake. Our results highlight a possible interplay between a surface protein and a siderophore and provide new insights into host adaptation of B. cereus and general bacterial pathogenesis.

  11. Estimating Bacterial Loadings to Surface Waters from Agricultural Watersheds

    OpenAIRE

    Panhorst, Kimberly A.

    2002-01-01

    Fecal bacteria and pathogens are a major source of surface water impairment. In Virginia alone, approximately 73% of impaired waters are impaired due to fecal coliforms (FC). Because bacteria are a significant cause of water body impairment and existing bacterial models are predominantly based upon laboratory-derived information, bacterial models are needed that describe bacterial die-off and transport processes under field conditions. Before these bacterial models can be developed, more f...

  12. Mobilization of Stored Iron in Mammals: A Review

    OpenAIRE

    Linder, Maria C.

    2013-01-01

    From the nutritional standpoint, several aspects of the biochemistry and physiology of iron are unique. In stark contrast to most other elements, most of the iron in mammals is in the blood attached to red blood cell hemoglobin and transporting oxygen to cells for oxidative phosphorylation and other purposes. Controlled and uncontrolled blood loss thus has a major impact on iron availability. Also, in contrast to most other nutrients, iron is poorly absorbed and poorly excreted. Moreover, amo...

  13. Effects of Iron in Neonates and Young Infants: a Review

    OpenAIRE

    Gian Maria Pacifici

    2016-01-01

    Iron is essential to erythrocyte oxygen transport and is a catalyst for oxidative metabolism in all cells. Iron is absorbed by the duodenum and requires an acidic environment for optimal absorption. Iron is found for 70% in erythrocytes, and 30% in storage, and a small amount in myoglobin and cytochromes. Iron supplementation reduces anemia in breastfed infants and increases in significant dose-dependent effects hemoglobin and ferritin levels, transferrin saturation, mean cell volume, and tra...

  14. Molecular mechanisms involved in intestinal iron absorption

    Institute of Scientific and Technical Information of China (English)

    Paul Sharp; Surjit Kaila Srai

    2007-01-01

    Iron is an essential trace metal in the human diet due to its obligate role in a number of metabolic processes.In the diet, iron is present in a number of different forms, generally described as haem (from haemoglobin and myoglobin in animal tissue) and non-haem iron (including ferric oxides and salts, ferritin and lactoferrin).This review describes the molecular mechanisms that co-ordinate the absorption of iron from the diet and its release into the circulation. While many components of the iron transport pathway have been elucidated, a number of key issues still remain to be resolved. Future work in this area will provide a clearer picture regarding the transcellular flux of iron and its regulation by dietary and humoral factors.

  15. Diurnal variation in the coupling of photosynthetic electron transport and carbon fixation in iron-limited phytoplankton in the NE subarctic Pacific

    Science.gov (United States)

    Schuback, Nina; Flecken, Mirkko; Maldonado, Maria T.; Tortell, Philippe D.

    2016-02-01

    Active chlorophyll a fluorescence approaches, including fast repetition rate fluorometry (FRRF), have the potential to provide estimates of phytoplankton primary productivity at an unprecedented spatial and temporal resolution. FRRF-derived productivity rates are based on estimates of charge separation in reaction center II (ETRRCII), which must be converted into ecologically relevant units of carbon fixation. Understanding sources of variability in the coupling of ETRRCII and carbon fixation provides physiological insight into phytoplankton photosynthesis and is critical for the application of FRRF as a primary productivity measurement tool. In the present study, we simultaneously measured phytoplankton carbon fixation and ETRRCII in the iron-limited NE subarctic Pacific over the course of a diurnal cycle. We show that rates of ETRRCII are closely tied to the diurnal cycle in light availability, whereas rates of carbon fixation appear to be influenced by endogenous changes in metabolic energy allocation under iron-limited conditions. Unsynchronized diurnal oscillations of the two rates led to 3.5-fold changes in the conversion factor between ETRRCII and carbon fixation (Kc / nPSII). Consequently, diurnal variability in phytoplankton carbon fixation cannot be adequately captured with FRRF approaches if a constant conversion factor is applied. Utilizing several auxiliary photophysiological measurements, we observed that a high conversion factor is associated with conditions of excess light and correlates with the increased expression of non-photochemical quenching (NPQ) in the pigment antenna, as derived from FRRF measurements. The observed correlation between NPQ and Kc / nPSII requires further validation but has the potential to improve estimates of phytoplankton carbon fixation rates from FRRF measurements alone.

  16. Iron Overload in Patients Undergoing Hematopoietic Stem Cell Transplantation

    Directory of Open Access Journals (Sweden)

    Vinod Pullarkat

    2010-01-01

    Full Text Available Recipients of hematopoietic stem cell transplantation (HSCT frequently have iron overload resulting from chronic transfusion therapy for anemia. In some cases, for example, in patients with myelodysplastic syndromes and thalassemia, this can be further exacerbated by increased absorption of iron from the gut as a result of ineffective erythropoiesis. Accumulating evidence has established the negative impact of elevated pretransplantation serum ferritin, a surrogate marker of iron overload, on overall survival and nonrelapse mortality after HSCT. Complications of HSCT associated with iron overload include increased bacterial and fungal infections as well as sinusoidal obstruction syndrome and possibly other regimen-related toxicities. Based on current evidence, particular attention should be paid to prevention and management of iron overload in allogeneic HSCT candidates, especially in patients with thalassemia and myelodysplastic syndromes. The pathophysiology of iron overload in the HSCT patient and optimum strategies to deal with iron overload during and after HSCT require further study.

  17. Iron and the female athlete: a review of dietary treatment methods for improving iron status and exercise performance

    OpenAIRE

    Alaunyte, Ieva; Stojceska, Valentina; Plunkett, Andrew

    2015-01-01

    Iron is a functional component of oxygen transport and energy production in humans and therefore is a critically important micronutrient for sport and exercise performance. Athletes, particularly female athletes participating in endurance sport, are at increased risk of compromised iron status due to heightened iron losses through menstruation and exercise-induced mechanisms associated with endurance activity. Conventionally oral iron supplementation is used in prevention or/and treatment of ...

  18. Physiological considerations in applying laboratory-determined buoyant densities to predictions of bacterial and protozoan transport in groundwater: Results of in-situ and laboratory tests

    Science.gov (United States)

    Harvey, R.W.; Metge, D.W.; Kinner, N.; Mayberry, N.

    1997-01-01

    Buoyant densities were determined for groundwater bacteria and microflagellates (protozoa) from a sandy aquifer (Cape Cod, MA) using two methods: (1) density-gradient centrifugation (DGC) and (2) Stoke's law approximations using sedimentation rates observed during natural-gradient injection and recovery tests. The dwarf (average cell size, 0.3 ??m), unattached bacteria inhabiting a pristine zone just beneath the water table and a majority (~80%) of the morphologically diverse community of free- living bacteria inhabiting a 5-km-long plume of organically-contaminated groundwater had DGC-determined buoyant densities <1.019 g/cm3 before culturing. In the aquifer, sinking rates for the uncultured 2-??m size class of contaminant plume bacteria were comparable to that of the bromide tracer (1.9 x 10-3 M), also suggesting a low buoyant density. Culturing groundwater bacteria resulted in larger (0.8-1.3 ??m), less neutrally- buoyant (1.043-1.081 g/cm3) cells with potential sedimentation rates up to 64-fold higher than those predicted for the uncultured populations. Although sedimentation generally could be neglected in predicting subsurface transport for the community of free-living groundwater bacteria, it appeared to be important for the cultured isolates, at least until they readapt to aquifer conditions. Culturing-induced alterations in size of the contaminant-plume microflagellates (2-3 ??m) were ameliorated by using a lower nutrient, acidic (pH 5) porous growth medium. Buoyant densities of the cultured microflagellates were low, i.e., 1.024-1.034 g/cm3 (using the DGC assay) and 1.017-1.039 g/cm3 (estimated from in-situ sedimentation rates), suggesting good potential for subsurface transport under favorable conditions.

  19. Iron bioavailability from commercially available iron supplements

    OpenAIRE

    Christides, Tatiana; Wray, David; McBride, Richard; Fairweather, Rose; Sharp, Paul

    2015-01-01

    Purpose Iron deficiency anaemia (IDA) is a global public health problem. Treatment with the standard of care ferrous iron salts may be poorly tolerated, leading to non-compliance and ineffective correction of IDA. Employing supplements with higher bioavailability might permit lower doses of iron to be used with fewer side effects, thus improving treatment efficacy. Here, we compared the iron bioavailability of ferrous sulphate tablets with alternative commercial iron products, including th...

  20. IRON INCREASES EXPRESSION OF IRON-EXPORT PROTEIN MTP1 IN LUNG CELLS

    Science.gov (United States)

    Accumulation of reactive iron in acute and chronic lung disease suggests that iron-driven free radical formation could contribute to tissue injury. Safe transport and sequestration of this metal is likely to be of importance in lung defense. We provide evidence for the expression...

  1. Effects of Pregnancy and Lactation on Iron Metabolism in Rats

    Directory of Open Access Journals (Sweden)

    Guofen Gao

    2015-01-01

    Full Text Available In female, inadequate iron supply is a highly prevalent problem that often leads to iron-deficiency anemia. This study aimed to understand the effects of pregnancy and lactation on iron metabolism. Rats with different days of gestation and lactation were used to determine the variations in iron stores and serum iron level and the changes in expression of iron metabolism-related proteins, including ferritin, ferroportin 1 (FPN1, ceruloplasmin (Cp, divalent metal transporter 1 (DMT1, transferrin receptor 1 (TfR1, and the major iron-regulatory molecule—hepcidin. We found that iron stores decline dramatically at late-pregnancy period, and the low iron store status persists throughout the lactation period. The significantly increased FPN1 level in small intestine facilitates digestive iron absorption, which maintains the serum iron concentration at a near-normal level to meet the increase of iron requirements. Moreover, a significant decrease of hepcidin expression is observed during late-pregnancy and early-lactation stages, suggesting the important regulatory role that hepcidin plays in iron metabolism during pregnancy and lactation. These results are fundamental to the understanding of iron homeostasis during pregnancy and lactation and may provide experimental bases for future studies to identify key molecules expressed during these special periods that regulate the expression of hepcidin, to eventually improve the iron-deficiency status.

  2. Special Delivery: Distributing Iron in the Cytosol of Mammalian cells

    Directory of Open Access Journals (Sweden)

    Caroline C Philpott

    2014-07-01

    Full Text Available Eukaryotic cells contain hundreds of proteins that require iron cofactors for activity. These iron enzymes are located in essentially every subcellular compartment; thus, iron cofactors must travel to every compartment in the cell. Iron cofactors exist in three basic forms: Heme, iron-sulfur clusters, and simple iron ions (also called non-heme iron. Iron ions taken up by the cell initially enter a kinetically labile, exchangeable pool that is referred to as the labile iron pool. The majority of the iron in this pool is delivered to mitochondria, where it is incorporated into heme and iron-sulfur clusters, as well as non-heme iron enzymes. These cofactors must then be distributed to nascent proteins in the mitochondria, cytosol, and membrane-bound organelles. Emerging evidence suggests that specific systems exist for the distribution of iron cofactors within the cell. These systems include membrane transporters, protein chaperones, specialized carriers, and small molecules. This review focuses on the distribution of iron ions in the cytosol and will highlight differences between the iron distribution systems of simple eukaryotes and mammalian cells.

  3. Direct Biohydrometallurgical Extraction of Iron from Ore. Final Technical Report

    International Nuclear Information System (INIS)

    A completely novel approach to iron extraction was investigated, based on reductive leaching of iron by anaerobic bacteria. Microorganisms were collected from an anaerobic bog where natural seepage of dissolved iron was observed. This mixed culture was used to reduce insoluble iron in a magnetite ore to the soluble ferrous (Fe+2) state. While dissolution rates were slow, concentrations of dissolved iron as high as 3487 mg/l could be reached if sufficient time was allowed. A factorial study of the effects of trace nutrients and different forms of organic matter indicated that the best dissolution rates and highest dissolved iron concentrations were achieved using soluble carbohydrate (sucrose) as the bacterial food source, and that nutrients other than nitrogen, phosphorus, potassium, sodium, and acetate were not necessary. A key factor in reaching high levels of dissolved iron was maintaining a high level of carbon dioxide in solution, since the solubility of iron carbonates increases markedly as the quantity of dissolved carbon dioxide increases. Once the iron is dissolved, it has been demonstrated that the ferrous iron can then be electroplated from solution, provided that the concentration of iron is sufficiently high and the hydrogen ion concentration is sufficiently low. However, if the leaching solution is electrolyzed directly, organic matter precipitates at the cathode along with the metallic iron. To prevent this problem, the ferrous iron should be separated from the bulk solution in a more concentrated, purified form. One route to accomplishing this is to take advantage of the change in solubility of ferrous iron as a function of carbon dioxide concentration. By cycling the concentration of carbon dioxide in solution, it is possible to produce an iron-rich concentrate that should be suitable for electrolysis. This represents the first viable hydrometallurgical method for leaching iron directly from ore and producing metallic iron

  4. Monoclonal antibodies against the iron regulated outer membrane Proteins of Acinetobacter baumannii are bactericidal

    OpenAIRE

    Goel, Vikas Kumar; Kapil, Arti

    2001-01-01

    Background Iron is an important nutrient required by all forms of life.In the case of human hosts,the free iron availability is 10-18M,which is far less than what is needed for the survival of the invading bacterial pathogen.To survive in such conditions, bacteria express new proteins in their outer membrane and also secrete iron chelators called siderophores. Results/ Discussion Acinetobacter baumannii ATCC 19606, a nosocomial pathogen which grows under iron restricted conditions, expresses ...

  5. The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

    OpenAIRE

    Lim, Chee Kent; Hassan, Karl A.; Tetu, Sasha G.; Loper, Joyce E.; Paulsen, Ian T.

    2012-01-01

    One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by employing microarray and iTRAQ techniques, respectively. Analysis of this data revealed that genes encoding functions related to iron homeostasis, includ...

  6. Iron and iron derived radicals

    Energy Technology Data Exchange (ETDEWEB)

    Borg, D.C.; Schaich, K.M.

    1987-04-01

    We have discussed some reactions of iron and iron-derived oxygen radicals that may be important in the production or treatment of tissue injury. Our conclusions challenge, to some extent, the usual lines of thought in this field of research. Insofar as they are born out by subsequent developments, the lessons they teach are two: Think fastexclamation Think smallexclamation In other words, think of the many fast reactions that can rapidly alter the production and fate of highly reactive intermediates, and when considering the impact of competitive reactions on such species, think how they affect the microenvironment (on the molecular scale) ''seen'' by each reactive molecule. 21 refs., 3 figs., 1 tab.

  7. Sorption of PAHs to humic acid- and iron(III)carbon ate particles by using passive dosing vials for investigating the transport of organic contamination in stormwater runoff

    DEFF Research Database (Denmark)

    Nielsen, Katrine; Mikkelsen, Peter Steen; Baun, Anders;

    2013-01-01

    ) has been foun d to facilitate transport of organic contaminants and metals in stormwater runoff system s, but little is known about the role of the colloidal fraction including nano-sized particl es (0.001-1 μm). Based on the large specific surface area of colloids and nanosized particles, t heir......During the last decades, the growing urbanisation a nd increasing anthropogenic activities in urban areas have turned urban stormwater runoff int o a surface water quality contamination problem. The concerns of urban stormwater runoff as a source of contamination in the receiving surface water...... abundance, and knowledge about their facilitated transport of persistent organic polluti on in natural waters, they are likely to diminish the efficiency of engineered treatment sys tems unless appropriately accounted for. In this work organic and inorganic nanosized partic les were investigated for their...

  8. High-rate behaviour of iron ore pellet

    Directory of Open Access Journals (Sweden)

    Gustafsson Gustaf

    2015-01-01

    Full Text Available Iron ore pellets are sintered, centimetre-sized spheres of ore with high iron content. Together with carbonized coal, iron ore pellets are used in the production of steel. In the transportation from the pelletizing plants to the customers, the iron ore pellets are exposed to different loading situations, resulting in degradation of strength and in some cases fragmentation. For future reliable numerical simulations of the handling and transportation of iron ore pellets, knowledge about their mechanical properties is needed. This paper describes the experimental work to investigate the dynamic mechanical properties of blast furnace iron ore pellets. To study the dynamic fracture of iron ore pellets a number of split Hopkinson pressure bar tests are carried out and analysed.

  9. Iron Sucrose Injection

    Science.gov (United States)

    ... is in a class of medications called iron replacement products. It works by replenishing iron stores so ... ferumoxytol (Feraheme), iron dextran (Dexferrum, Infed, Proferdex), or sodium ferric gluconate (Ferrlecit); any other medications; or any ...

  10. Iron Dextran Injection

    Science.gov (United States)

    ... is in a class of medications called iron replacement products. It works by replenishing iron stores so ... carboxymaltose (Injectafer), ferumoxytol (Feraheme), iron sucrose (Venofer), or sodium ferric gluconate (Ferrlecit);any other medications; or any ...

  11. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... refers to a condition in which your blood has a lower than normal number of red blood ... iron, your body starts using the iron it has stored. Soon, the stored iron gets used up. ...

  12. Taking iron supplements

    Science.gov (United States)

    ... medlineplus.gov/ency/article/007478.htm Taking iron supplements To use the sharing features on this page, ... levels. You may also need to take iron supplements as well to rebuild iron stores in your ...

  13. Iron deficiency anemia

    Science.gov (United States)

    ... Iron-rich foods include: Chicken and turkey Dried lentils, peas, and beans Fish Meats (liver is the ... and egg yolks are high sources of iron. Flour, bread, and some cereals are fortified with iron. ...

  14. Epigenetic regulation of iron homeostasis in Arabidopsis.

    Science.gov (United States)

    Xing, Jiewen; Wang, Tianya; Ni, Zhongfu

    2015-01-01

    Iron (Fe) is one of the most important microelement required for plant growth and development because of its unique property of catalyzing oxidation/reduction reactions. Iron deficiency impairs fundamental processes which could lead to a decrease in chlorophyll production and pollen fertility, thus influencing crop productivity and quality. However, iron in excess is toxic to the cell and is harmful to the plant. To exactly control the iron content in all tissues, plants have evolved many strategies to regulate iron homeostasis, which refers to 2 successive steps: iron uptake at the root surface, and iron distribution in vivo. In the last decades, a number of transporters and regulatory factors involved in this process have been isolated and identified. To cope with the complicated flexible environmental conditions, plants apply diverse mechanisms to regulate the expression and activity of these components. One of the most important mechanisms is epigenetic regulation of iron homeostasis. This review has been presented to provide an update on the information supporting the involvement of histone modifications in iron homeostasis and possible future course of the field. PMID:26313698

  15. Epigenetic regulation of iron homeostasis in Arabidopsis

    Science.gov (United States)

    Xing, Jiewen; Wang, Tianya; Ni, Zhongfu

    2015-01-01

    Iron (Fe) is one of the most important microelement required for plant growth and development because of its unique property of catalyzing oxidation/reduction reactions. Iron deficiency impairs fundamental processes which could lead to a decrease in chlorophyll production and pollen fertility, thus influencing crop productivity and quality. However, iron in excess is toxic to the cell and is harmful to the plant. To exactly control the iron content in all tissues, plants have evolved many strategies to regulate iron homeostasis, which refers to 2 successive steps: iron uptake at the root surface, and iron distribution in vivo. In the last decades, a number of transporters and regulatory factors involved in this process have been isolated and identified. To cope with the complicated flexible environmental conditions, plants apply diverse mechanisms to regulate the expression and activity of these components. One of the most important mechanisms is epigenetic regulation of iron homeostasis. This review has been presented to provide an update on the information supporting the involvement of histone modifications in iron homeostasis and possible future course of the field. PMID:26313698

  16. Multiband thermal transport in the iron-based superconductor B a1 -xKxF e2A s2

    Science.gov (United States)

    Matusiak, Marcin; Wolf, Thomas

    2015-12-01

    We present results of precise measurements of the thermal and electrical transport in the optimally and overdoped B a1 -xKxF e2A s2 single crystals (x =0.35 ,0.55 ,0.88 ) and compare them to the previously reported data on Ba (Fe1-yC oy ) 2A s2 . A contraction of the electron pocket is observed upon substitution potassium for barium, but even at the extreme doping (x =0.88 ) there is still a noticeable contribution from negative charge carriers to the electronic transport. The size of the electron pocket in all K-doped samples is small enough to cause a significant enhancement of the respective Hall-Lorenz number. Another observed characteristic is the emergence of a maximum in the transverse thermal conductivity below the superconducting critical temperature of the optimally (x =0.35 ) and slightly overdoped (x =0.55 ) samples. The evolution of this anomaly from the optimally electron-doped Ba (Fe0.94Co0.06 ) 2A s2 to hole-overdoped B a0.45K0.55F e2A s2 suggests formation of a uniform superconducting gap on the electron pocket in the former and regions of a depressed gap on the hole pocket in the latter.

  17. Genetics Home Reference: iron-refractory iron deficiency anemia

    Science.gov (United States)

    ... refractory iron deficiency anemia iron-refractory iron deficiency anemia Enable Javascript to view the expand/collapse boxes. ... All Close All Description Iron-refractory iron deficiency anemia is one of many types of anemia , which ...

  18. Iron and stony-iron meteorites

    DEFF Research Database (Denmark)

    Benedix, Gretchen K.; Haack, Henning; McCoy, T.J.

    2014-01-01

    Without iron and stony-iron meteorites, our chances of ever sampling the deep interior of a differentiated planetary object would be next to nil. Although we live on a planet with a very substantial core, we will never be able to sample it. Fortunately, asteroid collisions provide us with a rich...... sampling of the deep interiors of differentiated asteroids. Iron and stony-iron meteorites are fragments of a large number of asteroids that underwent significant geological processing in the early solar system. Parent bodies of iron and some stony-iron meteorites completed a geological evolution similar...... to that continuing on Earth – although on much smaller length- and timescales – with melting of the metal and silicates; differentiation into core, mantle, and crust; and probably extensive volcanism. Iron and stony-iron meteorites are our only available analogues to materials found in the deep...

  19. Genetic/metabolic effect of iron metabolism and rare anemias

    Directory of Open Access Journals (Sweden)

    Clara Camaschella

    2013-03-01

    Full Text Available Advances in iron metabolism have allowed a novel classification of iron disorders and to identify previously unknown diseases. These disorders include genetic iron overload (hemochromatosis and inherited iron-related anemias, in some cases accompanied by iron overload. Rare inherited anemias may affect the hepcidin pathway, iron absorption, transport, utilization and recycling. Among the genetic iron-related anemias the most common form is likely the iron-refractory iron-deficiency anemia (IRIDA, due to mutations of the hepcidin inhibitor TMPRSS6 encoding the serine protease matriptase-2. IRIDA is characterized by hepcidin up-regulation, decrease iron absorption and macrophage recycling and by microcytic- hypochromic anemia, unresponsive to oral iron. High serum hepcidin levels may suggest the diagnosis, which requires demonstrating the causal TMPRSS6 mutations by gene sequencing. Other rare microcytic hypochromic anemias associated with defects of iron transport-uptake are the rare hypotransferrinemia, and DMT1 and STEAP3 mutations. The degree of anemia is variable and accompanied by secondary iron overload even in the absence of blood transfusions. This is due to the iron-deficient or expanded erythropoiesis that inhibits hepcidin transcription, increases iron absorption, through the erythroid regulator, as in untransfused beta-thalassemia. Sideroblastic anemias are due to decreased mitochondrial iron utilization for heme or sulfur cluster synthesis. Their diagnosis requires demonstrating ringed sideroblasts by Perl’s staining of the bone marrow smears. The commonest X-linked form is due to deltaamino- levulinic-synthase-2-acid (ALAS2 mutations. The recessive, more severe form, affects SLC25A38, which encodes a potential mitochondrial importer of glycine, an amino acid essential for ALA synthesis and thus results in heme deficiency. Two disorders affect iron/sulfur cluster biogenesis: deficiency of the ATP-binding cassette B7 (ABCB7 causes X

  20. The bacterial magnetosome: a unique prokaryotic organelle.

    Science.gov (United States)

    Lower, Brian H; Bazylinski, Dennis A

    2013-01-01

    The bacterial magnetosome is a unique prokaryotic organelle comprising magnetic mineral crystals surrounded by a phospholipid bilayer. These inclusions are biomineralized by the magnetotactic bacteria which are ubiquitous, aquatic, motile microorganisms. Magnetosomes cause cells of magnetotactic bacteria to passively align and swim along the Earth's magnetic field lines, as miniature motile compass needles. These specialized compartments consist of a phospholipid bilayer membrane surrounding magnetic crystals of magnetite (Fe3O4) or greigite (Fe3S4). The morphology of these membrane-bound crystals varies by species with a nominal magnetic domain size between 35 and 120 nm. Almost all magnetotactic bacteria arrange their magnetosomes in a chain within the cell there by maximizing the magnetic dipole moment of the cell. It is presumed that magnetotactic bacteria use magnetotaxis in conjunction with chemotaxis to locate and maintain an optimum position for growth and survival based on chemistry, redox and physiology in aquatic habitats with vertical chemical concentration and redox gradients. The biosynthesis of magnetosomes is a complex process that involves several distinct steps including cytoplasmic membrane modifications, iron uptake and transport, initiation of crystallization, crystal maturation and magnetosome chain formation. While many mechanistic details remain unresolved, magnetotactic bacteria appear to contain the genetic determinants for magnetosome biomineralization within their genomes in clusters of genes that make up what is referred to as the magnetosome gene island in some species. In addition, magnetosomes contain a unique set of proteins, not present in other cellular fractions, which control the biomineralization process. Through the development of genetic systems, proteomic and genomic work, and the use of molecular and biochemical tools, the functions of a number of magnetosome membrane proteins have been demonstrated and the molecular

  1. What´s cheapest, intravenous iron sucrose- or intravenous iron carboxymaltose treatment in IBD patients?

    DEFF Research Database (Denmark)

    Bager, Palle; Dahlerup, Jens Frederik

    , utensils and ½ hour spend by a nurse per visit; showed approximately 150€ extra cost per 1000 mg Fe++ administrated, if iron carboxymaltose was chosen. In contrast the CEA including both BIA-values and patient-related costs (transportation and lost income) showed iron carboxymaltose to be more cost......®, Vifor) treatment to IBD patients in an outpatient setting.   Background: Intravenous iron sucrose can be given as a maximum of 200 mg Fe++ per infusion vs. intravenous iron carboxymaltose that can be given as a maximum of 1000 mg Fe++ in a single infusion leading to fewer infusions and visits. The drug......++ till 1600 mg Fe++. The WTP analysis was based on a total infusion-dose at 1400 mg Fe++. The evaluations are analysed assuming that the effect parameter (quantity of iron delivered) is comparable regardless of the iron formulation given intravenously.   Results: The BIA including price for drug...

  2. A study on species transport in the corrosion products of ferrous archaeological analogues - a contribution to the modelling of iron long term corrosion behaviour

    International Nuclear Information System (INIS)

    One of the main technological and environmental challenges for the next centuries is the safe storage of nuclear wastes. For this purpose, the behaviour during several centuries of every material constituting the barrier between wastes and environment must be predicted. In addition to modelling and laboratory simulations, the only mean to study corrosion systems formed during several centuries is to analyse archaeological ferrous artefacts buried in soil. Precedent studies on this kind of artefacts have shown that the corrosion system is formed by the metallic core, a dense corrosion product layer, a transformed medium constituted of a mix of corrosion products and soil compounds, and the soil itself. Moreover, analytical and electrochemical studies seem to show that the corrosion mechanisms are driven by the species transport in the dense product layer (DPL) and especially by oxygen migration in the DPL pores. Thus, it seems necessary to precise the species transport properties in the DPL. A characterisation study on ferrous artefacts coming from the site of Glinet (16. AD) have been carried out. The rust layers have been studied using several techniques. The composition analyses were performed with Energy Dispersive Spectroscopy (EDS) coupled to the Scanning Electron Microscope, and Electron Probe Microanalysis (EPMA). Structural information have been obtained by X-ray micro-diffraction (μXRD) and micro-Raman spectroscopy. The aim of this communication is to present the results of a study performed with markers in order to better understand the species transport in the DPL. Experiments focus on an archaeological artefact part from Glinet excavation. The migration in the DPL of I and Na ions (which have roughly the same diffusion coefficient in water than oxygen) will be studied by immersion of an archaeological analogue with his DPL in a saturated iodide (NaI) aqueous solution. After different immersion times (1 h, 3 h, 7 h and 168 h), the concentration profiles

  3. A study on species transport in the corrosion products of ferrous archaeological analogues - a contribution to the modelling of iron long term corrosion behaviour

    Energy Technology Data Exchange (ETDEWEB)

    Vega, E.; Dillmann, Ph.; Fluzin, Ph. [LRC CEA DSM 01-27: IRAMAT UMR5060 CNRS et Laboratoire Pierre Sue (CEA/CNRS), CEA Saclay 91191 Gif-sur-Yvette Cedex (France)

    2004-07-01

    One of the main technological and environmental challenges for the next centuries is the safe storage of nuclear wastes. For this purpose, the behaviour during several centuries of every material constituting the barrier between wastes and environment must be predicted. In addition to modelling and laboratory simulations, the only mean to study corrosion systems formed during several centuries is to analyse archaeological ferrous artefacts buried in soil. Precedent studies on this kind of artefacts have shown that the corrosion system is formed by the metallic core, a dense corrosion product layer, a transformed medium constituted of a mix of corrosion products and soil compounds, and the soil itself. Moreover, analytical and electrochemical studies seem to show that the corrosion mechanisms are driven by the species transport in the dense product layer (DPL) and especially by oxygen migration in the DPL pores. Thus, it seems necessary to precise the species transport properties in the DPL. A characterisation study on ferrous artefacts coming from the site of Glinet (16. AD) have been carried out. The rust layers have been studied using several techniques. The composition analyses were performed with Energy Dispersive Spectroscopy (EDS) coupled to the Scanning Electron Microscope, and Electron Probe Microanalysis (EPMA). Structural information have been obtained by X-ray micro-diffraction ({mu}XRD) and micro-Raman spectroscopy. The aim of this communication is to present the results of a study performed with markers in order to better understand the species transport in the DPL. Experiments focus on an archaeological artefact part from Glinet excavation. The migration in the DPL of I and Na ions (which have roughly the same diffusion coefficient in water than oxygen) will be studied by immersion of an archaeological analogue with his DPL in a saturated iodide (NaI) aqueous solution. After different immersion times (1 h, 3 h, 7 h and 168 h), the concentration

  4. TLR4-dependent hepcidin expression by myeloid cells in response to bacterial pathogens

    OpenAIRE

    Peyssonnaux, Carole; Zinkernagel, Annelies S.; Datta, Vivekanand; Lauth, Xavier; Johnson, Randall S; Nizet, Victor

    2006-01-01

    Hepcidin is an antimicrobial peptide secreted by the liver during inflammation that plays a central role in mammalian iron homeostasis. Here we demonstrate the endogenous expression of hepcidin by macrophages and neutrophils in vitro and in vivo. These myeloid cell types produced hepcidin in response to bacterial pathogens in a toll-like receptor 4 (TLR4)-dependent fashion. Conversely, bacterial stimulation of macrophages triggered a TLR4-dependent reduction in the iron exporter ferroportin. ...

  5. A high-fidelity multiphysics model for the new solid oxide iron-air redox battery part I: Bridging mass transport and charge transfer with redox cycle kinetics

    Energy Technology Data Exchange (ETDEWEB)

    Jin, XF; Zhao, X; Huang, K

    2015-04-15

    A high-fidelity two-dimensional axial symmetrical multi-physics model is described in this paper as an effort to simulate the cycle performance of a recently discovered solid oxide metal-air redox battery (SOMARB). The model collectively considers mass transport, charge transfer and chemical redox cycle kinetics occurring across the components of the battery, and is validated by experimental data obtained from independent research. In particular, the redox kinetics at the energy storage unit is well represented by Johnson-Mehl-Avrami-Kolmogorov (JIVIAK) and Shrinking Core models. The results explicitly show that the reduction of Fe3O4 during the charging cycle limits the overall performance. Distributions of electrode potential, overpotential, Nernst potential, and H-2/H2O-concentration across various components of the battery are also systematically investigated. (C) 2015 Elsevier B.V. All rights reserved.

  6. A high-fidelity multiphysics model for the new solid oxide iron-air redox battery. part I: Bridging mass transport and charge transfer with redox cycle kinetics

    Science.gov (United States)

    Jin, Xinfang; Zhao, Xuan; Huang, Kevin

    2015-04-01

    A high-fidelity two-dimensional axial symmetrical multi-physics model is described in this paper as an effort to simulate the cycle performance of a recently discovered solid oxide metal-air redox battery (SOMARB). The model collectively considers mass transport, charge transfer and chemical redox cycle kinetics occurring across the components of the battery, and is validated by experimental data obtained from independent research. In particular, the redox kinetics at the energy storage unit is well represented by Johnson-Mehl-Avrami-Kolmogorov (JMAK) and Shrinking Core models. The results explicitly show that the reduction of Fe3O4 during the charging cycle limits the overall performance. Distributions of electrode potential, overpotential, Nernst potential, and H2/H2O-concentration across various components of the battery are also systematically investigated.

  7. Iron from Zealandic bog iron ore -

    DEFF Research Database (Denmark)

    Lyngstrøm, Henriette Syrach

    2011-01-01

    og geologiske materiale, metallurgiske analyser og eksperimentel arkæologiske forsøg - konturerne af en jernproduktion med udgangspunkt i den sjællandske myremalm. The frequent application by archaeologists of Werner Christensen’s distribution map for the occurrence of bog iron ore in Denmark (1966...... contours are sketched of iron production based on bog iron ore from Zealand....

  8. Influence of microRNA on the Maintenance of Human Iron Metabolism

    Directory of Open Access Journals (Sweden)

    Stephen Clarke

    2013-07-01

    Full Text Available Iron is an essential nutrient critical for many cellular functions including DNA synthesis, ATP generation, and cellular proliferation. Though essential, excessive iron may contribute to the generation of free radicals capable of damaging cellular lipids, proteins, and nucleic acids. As such, the maintenance and control of cellular iron homeostasis is critical to prevent either iron deficiency or iron toxicity conditions. The maintenance of cellular iron homeostasis is largely coordinated by a family of cytosolic RNA binding proteins known as Iron Regulatory Proteins (IRP that function to post-transcriptionally control the translation and/or stability of mRNA encoding proteins required for iron uptake, storage, transport, and utilization. More recently, a class of small non-coding RNA known as microRNA (miRNA has also been implicated in the control of iron metabolism. To date, miRNA have been demonstrated to post-transcriptionally regulate the expression of genes associated with iron acquisition (transferrin receptor and divalent metal transporter, iron export (ferroportin, iron storage (ferritin, iron utilization (ISCU, and coordination of systemic iron homeostasis (HFE and hemojevelin. Given the diversity of miRNA and number of potential mRNA targets, characterizing factors that contribute to alterations in miRNA expression, biogenesis, and processing will enhance our understanding of mechanisms by which cells respond to changes in iron demand and/or iron availability to control cellular iron homeostasis.

  9. Diffusion and segregation properties of iron in silicon dioxide

    Science.gov (United States)

    Ramappa, Deepak Arabagatte

    1999-09-01

    Iron contamination often originates at the surface of a wafer during processing in the IC fabrication line and is diffused into the wafer during subsequent thermal processing. Since the silicon wafer surface is often passivated with a silicon dioxide layer, comprehensive understanding of iron transport in silicon dioxide is necessary. The goal of this research is to advance the fundamental and practical knowledge of the diffusion properties of iron in silicon dioxide. This dissertation evaluates, for the first time, the diffusion parameters of iron in electronic grade silicon dioxide and presents a quantitative analysis of iron transport in silicon dioxide. A source of iron applied on the surface of thermally oxidized silicon wafers was diffused at temperatures ranging from 700 to 1100°C under oxygen, nitrogen, forming gas and chlorinated ambients to diffuse the iron impurity through the oxide and into the silicon. The iron concentration profile in the oxide and silicon was measured using the techniques of Total Reflection X-Ray Fluorescence (TXRF), Deep Level Transient Spectroscopy (DLTS) and Surface Photovoltage (SPV). A two-boundary diffusion model was applied to the experimental data to determine the diffasivity and segregation coefficient of iron in SiO 2. Iron diffusivity in Si02 was observed to obey the Arrhenius relationship and has a thermal activation energy of 1.51eV. Results showed, that processing factors such as oxide thickness, nature of oxide, temperature, time and ambient affect the transport of iron in SiO2. The minimum oxide thickness required to mask iron contaminate diffusion into the wafer was empirically determined using the diffusivity data. Iron was found to diffuse faster in wet oxides and under an annealing ambient of hydrogen. Chlorine ambients reduce the amount of iron transported to the silicon wafer through the oxide. Iron exhibits a strong tendency to preferentially segregate to the SiO2 side of the SiO2-Si interface and has

  10. Reaction-Based Reactive Transport Modeling of Iron Reduction and Uranium Immobilization at Area 2 of the NABIR Field Research Center, Subproject to Co-PI Eric E. Roden. Final Report

    International Nuclear Information System (INIS)

    This report summarizes research conducted in conjunction with a project entitled 'Reaction-Based Reactive Transport Modeling of Iron Reduction and Uranium Immobilization at Area 2 of the NABIR Field Research Center', which was funded through the Integrative Studies Element of the former NABIR Program (now the Environmental Remediation Sciences Program) within the Office of Biological and Environmental Research. Dr. William Burgos (The Pennsylvania State University) was the overall PI/PD for the project, which included Brian Dempsey (Penn State), Gour-Tsyh (George) Yeh (Central Florida University), and Eric Roden (formerly at The University of Alabama, now at the University of Wisconsin) as separately-funded co-PIs. The project focused on development of a mechanistic understanding and quantitative models of coupled Fe(III)/U(VI) reduction in FRC Area 2 sediments. The work builds on our previous studies of microbial Fe(III) and U(VI) reduction, and was directly aligned with the Scheibe et al. ORNL FRC Field Project at Area 2.

  11. Influence of DMT1 and iron status on inflammatory responses in the lung

    OpenAIRE

    Kim, Jonghan; Molina, Ramon M.; Donaghey, Thomas C.; Buckett, Peter D.; Brain, Joseph D.; Wessling-Resnick, Marianne

    2011-01-01

    Divalent metal transporter 1 (DMT1) is the major iron transporter responsible for duodenal dietary iron absorption and is required for erythropoiesis. Recent studies suggest that loss of DMT1 activity could be involved in metal-related lung injury, but little is known about the effects of iron status and DMT1 function on pulmonary inflammation. To better define the role of DMT1 and iron status in pulmonary inflammatory responses, we performed bronchoalveolar lavage (BAL) following intratrache...

  12. An update on iron acquisition by Legionella pneumophila: new pathways for siderophore uptake and ferric iron reduction

    Science.gov (United States)

    Cianciotto, Nicholas P

    2015-01-01

    Iron acquisition is critical for the growth and pathogenesis of Legionella pneumophila, the causative agent of Legionnaires’ disease. L. pneumophila utilizes two main modes of iron assimilation, namely ferrous iron uptake via the FeoB system and ferric iron acquisition through the action of the siderophore legiobactin. This review highlights recent studies concerning the mechanism of legiobactin assimilation, the impact of c-type cytochromes on siderophore production, the importance of legiobactin in lung infection and a newfound role for a bacterial pyomelanin in iron acquisition. These data demonstrate that key aspects of L. pneumophila iron acquisition are significantly distinct from those of long-studied, ‘model’ organisms. Indeed, L. pneumophila may represent a new paradigm for a variety of other intracellular parasites, pathogens and under-studied bacteria. PMID:26000653

  13. Porous Iron Structure Fabrication and Characterization

    OpenAIRE

    Kim, Taewoo

    2015-01-01

    Porous iron or steel structures can be useful as light- weight materials for transportation and structural applications. We have created such porous iron metallic structures by utilizing a composite of Fe2O3 nanoparticles(NPs), poly(methyl methacrylate)(PMMA) beads and polyethylene glycol(PEG) binder resin. Final optimized porous iron structure contains micro-pores of 15-20 µm size and nano-pores of 100-500 nm with strong connections between Fe grains. The results indicate that further effort...

  14. Evolution of the iron-responsive element

    OpenAIRE

    Piccinelli, Paul; Samuelsson, Tore

    2007-01-01

    An RNA hairpin structure referred to as the iron-responsive element (IRE) and iron regulatory proteins (IRPs) are key players in the control of iron metabolism in animal cells. They regulate translation initiation or mRNA stability, and the IRE is found in a variety of mRNAs, such as those encoding ferritin, transferrin receptor (Tfr), erythroid aminolevulinic acid synthase (eALAS), mitochondrial aconitase (mACO), ferroportin, and divalent metal transporter 1 (DMT1). We have studied the evolu...

  15. Duodenal mRNA expression of iron related genes in response to iron loading and iron deficiency in four strains of mice

    OpenAIRE

    Dupic, F; Fruchon, S; Bensaid, M; Loreal, O; Brissot, P; Borot, N; Roth, M P; Coppin, H

    2002-01-01

    Background: Although much progress has been made recently in characterising the proteins involved in duodenal iron trafficking, regulation of intestinal iron transport remains poorly understood. It is not known whether the level of mRNA expression of these recently described molecules is genetically regulated. This is of particular interest however as genetic factors are likely to determine differences in iron status among mouse strains and probably also contribute to the phenotypic variabili...

  16. [Iron-refractory iron deficiency anemia].

    Science.gov (United States)

    Kawabata, Hiroshi

    2016-02-01

    The major causes of iron deficiency anemia (IDA) include iron loss due to bleeding, increased iron requirements, and decreased iron absorption by the intestine. The most common cause of IDA in Japanese women is iron loss during menstruation. Autoimmune atrophic gastritis and Helicobacter pylori infection can also cause IDA by reducing intestinal iron absorption. In addition to these common etiologies, germline mutations of TMPRSS6 can cause iron-refractory IDA (IRIDA). TMPRSS6 encodes matriptase-2, a membrane-bound serine protease primarily expressed in the liver. Functional loss of matriptase-2 due to homozygous mutations results in an increase in the expression of hepcidin, which is the key regulator of systemic iron homeostasis. The serum hepcidin increase in turn leads to a decrease in iron supply from the intestine and macrophages to erythropoietic cells. IRIDA is microcytic and hypochromic, but decreased serum ferritin is not observed as in IDA. IRIDA is refractory to oral iron supplementation, but does respond to intravenous iron supplementation to some extent. Because genetic testing is required for the diagnoses of IRIDA, a considerable number of cases may go undiagnosed and may thus be overlooked. PMID:26935626

  17. Special thermite cast irons

    OpenAIRE

    Yu. Zhiguts; I. Kurytnik

    2008-01-01

    The given paper deals with the problems of the synthesis of cast iron by metallothermy synthesis. On the basis of investigated method of calculations structures of charges have been arranged and cast iron has been synthesized further. Peculiarities metallothermic smelting were found, mechanical properties and structure of received cast iron were investigated and different technologies for cast iron receiving were worked out.

  18. Iron deficiency anemia

    Science.gov (United States)

    Anemia - iron deficiency ... iron from old red blood cells. Iron deficiency anemia develops when your body's iron stores run low. ... You may have no symptoms if the anemia is mild. Most of the time, ... slowly. Symptoms may include: Feeling weak or tired more often ...

  19. Nutritional iron deficiency

    NARCIS (Netherlands)

    Zimmermann, M.B.; Hurrell, R.F.

    2007-01-01

    Iron deficiency is one of the leading risk factors for disability and death worldwide, affecting an estimated 2 billion people. Nutritional iron deficiency arises when physiological requirements cannot be met by iron absorption from diet. Dietary iron bioavailability is low in populations consuming

  20. Bacterial Nail Infection (Paronychia)

    Science.gov (United States)

    ... of nail infection is often caused by a bacterial infection but may also be caused by herpes, a ... to a type of yeast called Candida , or bacterial infection, and this may lead to abnormal nail growth. ...

  1. Urinary iron excretion test in iron deficiency anemia.

    OpenAIRE

    Kimura,Ikuro; Yamana,Masatoshi; NNishishita,Akira; Sugiyama,Motoharu; Miyata, Akira

    1980-01-01

    A urinary iron excretion test was carried out in 22 patients with iron deficiency anemia. The iron excretion index was significantly higher in patients with intractable iron deficiency anemia compared with normal subjects and anemic patients who were responsive to iron therapy. The findings suggest that iron excretion may be a factor that modulates the response of patients to iron therapy.

  2. Structural, Transport and Electrochemical Properties of LiFePO4 Substituted in Lithium and Iron Sublattices (Al, Zr, W, Mn, Co and Ni

    Directory of Open Access Journals (Sweden)

    Konrad Świerczek

    2013-04-01

    Full Text Available LiFePO4 is considered to be one of the most promising cathode materials for lithium ion batteries for electric vehicle (EV application. However, there are still a number of unsolved issues regarding the influence of Li and Fe-site substitution on the physicochemical properties of LiFePO4. This is a review-type article, presenting results of our group, related to the possibility of the chemical modification of phosphoolivine by introduction of cation dopants in Li and Fe sublattices. Along with a synthetic review of previous papers, a large number of new results are included. The possibility of substitution of Li+ by Al3+, Zr4+, W6+ and its influence on the physicochemical properties of LiFePO4 was investigated by means of XRD, SEM/EDS, electrical conductivity and Seebeck coefficient measurements. The range of solid solution formation in Li1−3xAlxFePO4, Li1−4xZrxFePO4 and Li1−6xWxFePO4 materials was found to be very narrow. Transport properties of the synthesized materials were found to be rather weakly dependent on the chemical composition. The battery performance of selected olivines was tested by cyclic voltammetry (CV. In the case of LiFe1−yMyPO4 (M = Mn, Co and Ni, solid solution formation was observed over a large range of y (0 0.25 leads to considerably lower values of σ. The activated character of electrical conductivity with a rather weak temperature dependence of the Seebeck coefficient suggests a small polaron-type conduction mechanism. The electrochemical properties of LiFe1−yMyPO4 strongly depend on the Fe substitution level.

  3. The Bordetella bhu Locus Is Required for Heme Iron Utilization

    OpenAIRE

    Vanderpool, Carin K.; Armstrong, Sandra K.

    2001-01-01

    Bordetella pertussis and Bordetella bronchiseptica are capable of obtaining iron from hemin and hemoglobin. Genes encoding a putative bacterial heme iron acquisition system (bhu, for Bordetella heme utilization) were identified in a B. pertussis genomic sequence database, and the corresponding DNA was isolated from a virulent strain of B. pertussis. A B. pertussis bhuR mutant, predicted to lack the heme outer membrane receptor, was generated by allelic exchange. In contrast to the wild-type s...

  4. Iron and genome stability: An update

    Energy Technology Data Exchange (ETDEWEB)

    Pra, Daniel, E-mail: daniel_pra@yahoo.com [PPG em Promocao da Saude, Universidade de Santa Cruz do Sul (UNISC), Santa Cruz do Sul, RS (Brazil); PPG em Saude e Comportamento, Universidade Catolica de Pelotas, Pelotas, RS (Brazil); Franke, Silvia Isabel Rech [PPG em Promocao da Saude, Universidade de Santa Cruz do Sul (UNISC), Santa Cruz do Sul, RS (Brazil); Henriques, Joao Antonio Pegas [Instituto de Biotecnologia, Universidade de Caxias do Sul, Caxias do Sul, RS (Brazil); Fenech, Michael [CSIRO Food and Nutritional Sciences, Adelaide, SA (Australia)

    2012-05-01

    Iron is an essential micronutrient which is required in a relatively narrow range for maintaining metabolic homeostasis and genome stability. Iron participates in oxygen transport and mitochondrial respiration as well as in antioxidant and nucleic acid metabolism. Iron deficiency impairs these biological pathways, leading to oxidative stress and possibly carcinogenesis. Iron overload has been linked to genome instability as well as to cancer risk increase, as seen in hereditary hemochromatosis. Iron is an extremely reactive transition metal that can interact with hydrogen peroxide to generate hydroxyl radicals that form the 8-hydroxy-guanine adduct, cause point mutations as well as DNA single and double strand breaks. Iron overload also induces DNA hypermethylation and can reduce telomere length. The current Recommended Dietary Allowances (RDA) for iron, according with Institute of Medicine Dietary Reference Intake (DRI), is based in the concept of preventing anemia, and ranges from 7 mg/day to 18 mg/day depending on life stage and gender. Pregnant women need 27 mg/day. The maximum safety level for iron intake, the Upper Level (UL), is 40-45 mg/day, based on the prevention of gastrointestinal distress associated to high iron intakes. Preliminary evidence indicates that 20 mg/day iron, an intake slightly higher than the RDA, may reduce the risk of gastrointestinal cancer in the elderly as well as increasing genome stability in lymphocytes of children and adolescents. Current dietary recommendations do not consider the concept of genome stability which is of concern because damage to the genome has been linked to the origin and progression of many diseases and is the most fundamental pathology. Given the importance of iron for homeostasis and its potential influence over genome stability and cancer it is recommended to conduct further studies that conclusively define these relationships.

  5. Iron and genome stability: An update

    International Nuclear Information System (INIS)

    Iron is an essential micronutrient which is required in a relatively narrow range for maintaining metabolic homeostasis and genome stability. Iron participates in oxygen transport and mitochondrial respiration as well as in antioxidant and nucleic acid metabolism. Iron deficiency impairs these biological pathways, leading to oxidative stress and possibly carcinogenesis. Iron overload has been linked to genome instability as well as to cancer risk increase, as seen in hereditary hemochromatosis. Iron is an extremely reactive transition metal that can interact with hydrogen peroxide to generate hydroxyl radicals that form the 8-hydroxy-guanine adduct, cause point mutations as well as DNA single and double strand breaks. Iron overload also induces DNA hypermethylation and can reduce telomere length. The current Recommended Dietary Allowances (RDA) for iron, according with Institute of Medicine Dietary Reference Intake (DRI), is based in the concept of preventing anemia, and ranges from 7 mg/day to 18 mg/day depending on life stage and gender. Pregnant women need 27 mg/day. The maximum safety level for iron intake, the Upper Level (UL), is 40–45 mg/day, based on the prevention of gastrointestinal distress associated to high iron intakes. Preliminary evidence indicates that 20 mg/day iron, an intake slightly higher than the RDA, may reduce the risk of gastrointestinal cancer in the elderly as well as increasing genome stability in lymphocytes of children and adolescents. Current dietary recommendations do not consider the concept of genome stability which is of concern because damage to the genome has been linked to the origin and progression of many diseases and is the most fundamental pathology. Given the importance of iron for homeostasis and its potential influence over genome stability and cancer it is recommended to conduct further studies that conclusively define these relationships.

  6. Obesity Promotes Alterations in Iron Recycling

    Directory of Open Access Journals (Sweden)

    Marta Citelli

    2015-01-01

    Full Text Available Hepcidin is a key hormone that induces the degradation of ferroportin (FPN, a protein that exports iron from reticuloendothelial macrophages and enterocytes. The aim of the present study was to experimentally evaluate if the obesity induced by a high-fat diet (HFD modifies the expression of FPN in macrophages and enterocytes, thus altering the iron bioavailability. In order to directly examine changes associated with iron metabolism in vivo, C57BL/6J mice were fed either a control or a HFD. Serum leptin levels were evaluated. The hepcidin, divalent metal transporter-1 (DMT1, FPN and ferritin genes were analyzed by real-time polymerase chain reaction. The amount of iron present in both the liver and spleen was determined by flame atomic absorption spectrometry. Ferroportin localization within reticuloendothelial macrophages was observed by immunofluorescence microscopy. Obese animals were found to exhibit increased hepcidin gene expression, while iron accumulated in the spleen and liver. They also exhibited changes in the sublocation of splenic cellular FPN and a reduction in the FPN expression in the liver and the spleen, while no changes were observed in enterocytes. Possible explanations for the increased hepcidin expression observed in HFD animals may include: increased leptin levels, the liver iron accumulation or endoplasmic reticulum (ER stress. Together, the results indicated that obesity promotes changes in iron bioavailability, since it altered the iron recycling function.

  7. Prevention of bacterial adhesion

    DEFF Research Database (Denmark)

    Klemm, Per; Vejborg, Rebecca Munk; Hancock, Viktoria

    2010-01-01

    Management of bacterial infections is becoming increasingly difficult due to the emergence and increasing prevalence of bacterial pathogens that are resistant to available antibiotics. Conventional antibiotics generally kill bacteria by interfering with vital cellular functions, an approach that....... As such, adhesion represents the Achilles heel of crucial pathogenic functions. It follows that interference with adhesion can reduce bacterial virulence. Here, we illustrate this important topic with examples of techniques being developed that can inhibit bacterial adhesion. Some of these will...

  8. Iron metabolism and iron supplementation in cancer patients

    OpenAIRE

    Ludwig, Heinz; Evstatiev, Rayko; Kornek, Gabriela; Aapro, Matti; Bauernhofer, Thomas; Buxhofer-Ausch, Veronika; Fridrik, Michael; Geissler, Dietmar; Geissler, Klaus; Gisslinger, Heinz; Koller, Elisabeth; Kopetzky, Gerhard; Lang, Alois; Rumpold, Holger; Steurer, Michael

    2015-01-01

    Summary Iron deficiency and iron deficiency-associated anemia are common complications in cancer patients. Most iron deficient cancer patients present with functional iron deficiency (FID), a status with adequate storage iron, but insufficient iron supply for erythroblasts and other iron dependent tissues. FID is the consequence of the cancer-associated cytokine release, while in absolute iron deficiency iron stores are depleted resulting in similar but often more severe symptoms of insuffici...

  9. Targeted Delivery of Amoxicillin to C. trachomatis by the Transferrin Iron Acquisition Pathway.

    Science.gov (United States)

    Hai, Jun; Serradji, Nawal; Mouton, Ludovic; Redeker, Virginie; Cornu, David; El Hage Chahine, Jean-Michel; Verbeke, Philippe; Hémadi, Miryana

    2016-01-01

    Weak intracellular penetration of antibiotics makes some infections difficult to treat. The Trojan horse strategy for targeted drug delivery is among the interesting routes being explored to overcome this therapeutic difficulty. Chlamydia trachomatis, as an obligate intracellular human pathogen, is responsible for both trachoma and sexually transmitted diseases. Chlamydia develops in a vacuole and is therefore protected by four membranes (plasma membrane, bacterial inclusion membrane, and bacterial membranes). In this work, the iron-transport protein, human serum-transferrin, was used as a Trojan horse for antibiotic delivery into the bacterial vacuole. Amoxicillin was grafted onto transferrin. The transferrin-amoxicillin construct was characterized by mass spectrometry and absorption spectroscopy. Its affinity for transferrin receptor 1, determined by fluorescence emission titration [KaffTf-amox = (1.3 ± 1.0) x 108], is very close to that of transferrin [4.3 x 108]. Transmission electron and confocal microscopies showed a co-localization of transferrin with the bacteria in the vacuole and were also used to evaluate the antibiotic capability of the construct. It is significantly more effective than amoxicillin alone. These promising results demonstrate targeted delivery of amoxicillin to suppress Chlamydia and are of interest for Chlamydiaceae and maybe other intracellular bacteria therapies. PMID:26919720

  10. Targeted Delivery of Amoxicillin to C. trachomatis by the Transferrin Iron Acquisition Pathway.

    Directory of Open Access Journals (Sweden)

    Jun Hai

    Full Text Available Weak intracellular penetration of antibiotics makes some infections difficult to treat. The Trojan horse strategy for targeted drug delivery is among the interesting routes being explored to overcome this therapeutic difficulty. Chlamydia trachomatis, as an obligate intracellular human pathogen, is responsible for both trachoma and sexually transmitted diseases. Chlamydia develops in a vacuole and is therefore protected by four membranes (plasma membrane, bacterial inclusion membrane, and bacterial membranes. In this work, the iron-transport protein, human serum-transferrin, was used as a Trojan horse for antibiotic delivery into the bacterial vacuole. Amoxicillin was grafted onto transferrin. The transferrin-amoxicillin construct was characterized by mass spectrometry and absorption spectroscopy. Its affinity for transferrin receptor 1, determined by fluorescence emission titration [KaffTf-amox = (1.3 ± 1.0 x 108], is very close to that of transferrin [4.3 x 108]. Transmission electron and confocal microscopies showed a co-localization of transferrin with the bacteria in the vacuole and were also used to evaluate the antibiotic capability of the construct. It is significantly more effective than amoxicillin alone. These promising results demonstrate targeted delivery of amoxicillin to suppress Chlamydia and are of interest for Chlamydiaceae and maybe other intracellular bacteria therapies.

  11. Effects of microbial redox cycling of iron on cast iron pipe corrosion in drinking water distribution systems.

    Science.gov (United States)

    Wang, Haibo; Hu, Chun; Zhang, Lili; Li, Xiaoxiao; Zhang, Yu; Yang, Min

    2014-11-15

    Bacterial characteristics in corrosion products and their effect on the formation of dense corrosion scales on cast iron coupons were studied in drinking water, with sterile water acting as a reference. The corrosion process and corrosion scales were characterized by electrochemical and physico-chemical measurements. The results indicated that the corrosion was more rapidly inhibited and iron release was lower due to formation of more dense protective corrosion scales in drinking water than in sterile water. The microbial community and denitrifying functional genes were analyzed by pyrosequencing and quantitative polymerase chain reactions (qPCR), respectively. Principal component analysis (PCA) showed that the bacteria in corrosion products played an important role in the corrosion process in drinking water. Nitrate-reducing bacteria (NRB) Acidovorax and Hydrogenophaga enhanced iron corrosion before 6 days. After 20 days, the dominant bacteria became NRB Dechloromonas (40.08%) with the protective corrosion layer formation. The Dechloromonas exhibited the stronger corrosion inhibition by inducing the redox cycling of iron, to enhance the precipitation of iron oxides and formation of Fe3O4. Subsequently, other minor bacteria appeared in the corrosion scales, including iron-respiring bacteria and Rhizobium which captured iron by the produced siderophores, having a weaker corrosion-inhibition effect. Therefore, the microbially-driven redox cycling of iron with associated microbial capture of iron caused more compact corrosion scales formation and lower iron release. PMID:25150521

  12. Magnetic Resonance Imaging of Tumors Colonized with Bacterial Ferritin-Expressing Escherichia coli

    OpenAIRE

    Hill, Philip J.; Stritzker, Jochen; Scadeng, Miriam; Geissinger, Ulrike; Haddad, Daniel; Basse-Lüsebrink, Thomas C.; Gbureck, Uwe; Jakob, Peter; Szalay, Aladar A.

    2011-01-01

    Background Recent studies have shown that human ferritin can be used as a reporter of gene expression for magnetic resonance imaging (MRI). Bacteria also encode three classes of ferritin-type molecules with iron accumulation properties. Methods and Findings Here, we investigated whether these bacterial ferritins can also be used as MRI reporter genes and which of the bacterial ferritins is the most suitable reporter. Bacterial ferritins were overexpressed in probiotic E. coli Nissle 1917. Cul...

  13. Impaired neutrophil function in 24p3 null mice contributes to enhanced susceptibility to bacterial infections

    OpenAIRE

    Liu, Zhuoming; Petersen, Robert; Devireddy, L.

    2013-01-01

    Lipocalin 24p3 (24p3) is a neutrophil secondary granule protein. 24p3 is also a siderocalin, which binds several bacterial siderophores. It was therefore proposed that synthesis and secretion of 24p3 by stimulated macrophages or release of 24p3 upon neutrophil degranulation sequesters iron-laden siderophores to attenuate bacterial growth. Accordingly, 24p3-deficient mice are susceptible to bacterial pathogens whose siderophores would normally be chelated by 24p3. Specific granule deficiency (...

  14. Iron and stony-iron meteorites

    DEFF Research Database (Denmark)

    Benedix, Gretchen K.; Haack, Henning; McCoy, T. J.

    2014-01-01

    interiors of Earth and other terrestrial planets. This chapter deals with our current knowledge of these meteorites. How did they form? What can they tell us about the early evolution of the solar system and its solid bodies? How closely do they resemble the materials from planetary interiors? What do and...... sampling of the deep interiors of differentiated asteroids. Iron and stony-iron meteorites are fragments of a large number of asteroids that underwent significant geological processing in the early solar system. Parent bodies of iron and some stony-iron meteorites completed a geological evolution similar......Without iron and stony-iron meteorites, our chances of ever sampling the deep interior of a differentiated planetary object would be next to nil. Although we live on a planet with a very substantial core, we will never be able to sample it. Fortunately, asteroid collisions provide us with a rich...

  15. Binding and entry of DNA in bacterial transformation

    Energy Technology Data Exchange (ETDEWEB)

    Lacks, S.A.

    1976-01-01

    Bacterial transformation in relation to DNA transport and competence in Streptococcus pneumoniae (also called Diplococcus pneumoniae) is discussed. This species will serve as a model with which to compare transformation in other bacterial species, particularly Bacillus subtilis and Haemophilus influenzae, with emphasis on the many similarities as well as differences.

  16. Neutrophilic iron oxidizers adapted to highly oxic environments

    DEFF Research Database (Denmark)

    Gülay, Arda; Musovic, Sanin; Albrechtsen, Hans-Jørgen;

    carbon) while oxygen (O2) is the electron acceptor provided during the aeration process. Numerous previous studies have described neutrophilic iron oxidizers as a bacterial guild with a special niche preference, especially the transition zone between aerobic and anoxic regions, where abiotic chemical...... indicate that neutrophilic iron oxidizers in highly oxic environments like drinking water treatment systems can be abundant (5 E+04 to 7 E+05 cells per gram of wet sand material). It was furthermore observed that the diversity of the cultivated dominant iron oxidizers differs substantially from those...

  17. Molecular Characterization of Bacterial Respiration on Minerals

    Energy Technology Data Exchange (ETDEWEB)

    Blake, Robert C.

    2013-04-26

    The overall aim of this project was to contribute to our fundamental understanding of proteins and biological processes under extreme environmental conditions. We sought to define the biochemical and physiological mechanisms that underlie biodegradative and other cellular processes in normal, extreme, and engineered environments. Toward that end, we sought to understand the substrate oxidation pathways, the electron transport mechanisms, and the modes of energy conservation employed during respiration by bacteria on soluble iron and insoluble sulfide minerals. In accordance with these general aims, the specific aims were two-fold: To identify, separate, and characterize the extracellular biomolecules necessary for aerobic respiration on iron under strongly acidic conditions; and to elucidate the molecular principles whereby these bacteria recognize and adhere to their insoluble mineral substrates under harsh environmental conditions. The results of these studies were described in a total of nineteen manuscripts. Highlights include the following: 1. The complete genome of Acidithiobacillus ferrooxidans ATCC 23270 (type strain) was sequenced in collaboration with the DOE Joint Genome Institute; 2. Genomic and mass spectrometry-based proteomic methods were used to evaluate gene expression and in situ microbial activity in a low-complexity natural acid mine drainage microbial biofilm community. This was the first effort to successfully analyze a natural community using these techniques; 3. Detailed functional and structural studies were conducted on rusticyanin, an acid-stable electron transfer protein purified from cell-free extracts of At. ferrooxidans. The three-dimensional structure of reduced rusticyanin was determined from a combination of homonuclear proton and heteronuclear 15N- and 13C-edited NMR spectra. Concomitantly, the three-dimensional structure of oxidized rusticyanin was determined by X-ray crystallography to a resolution of 1.9 A by multiwavelength

  18. Identification of differentially regulated proteins of Edwardsiella ictaluri during iron restriction

    Science.gov (United States)

    Edwardsiella ictaluri is a Gram-negative facultative anaerobe intracellular bacterium that causes enteric septicemia in channel catfish. Iron is an essential inorganic nutrient of bacteria and is crucial for bacterial invasion. Reduced availability of iron by the host may cause a significant stres...

  19. Iron deficiency in Europe.

    Science.gov (United States)

    Hercberg, S; Preziosi, P; Galan, P

    2001-04-01

    In Europe, iron deficiency is considered to be one of the main nutritional deficiency disorders affecting large fractions of the population, particularly such physiological groups as children, menstruating women and pregnant women. Some factors such as type of contraception in women, blood donation or minor pathological blood loss (haemorrhoids, gynaecological bleeding...) considerably increase the difficulty of covering iron needs. Moreover, women, especially adolescents consuming low-energy diets, vegetarians and vegans are at high risk of iron deficiency. Although there is no evidence that an absence of iron stores has any adverse consequences, it does indicate that iron nutrition is borderline, since any further reduction in body iron is associated with a decrease in the level of functional compounds such as haemoglobin. The prevalence of iron-deficient anaemia has slightly decreased in infants and menstruating women. Some positive factors may have contributed to reducing the prevalence of iron-deficiency anaemia in some groups of population: the use of iron-fortified formulas and iron-fortified cereals; the use of oral contraceptives and increased enrichment of iron in several countries; and the use of iron supplements during pregnancy in some European countries. It is possible to prevent and control iron deficiency by counseling individuals and families about sound iron nutrition during infancy and beyond, and about iron supplementation during pregnancy, by screening persons on the basis of their risk for iron deficiency, and by treating and following up persons with presumptive iron deficiency. This may help to reduce manifestations of iron deficiency and thus improve public health. Evidence linking iron status with risk of cardiovascular disease or cancer is unconvincing and does not justify changes in food fortification or medical practice, particularly because the benefits of assuring adequate iron intake during growth and development are well established

  20. Electromagnetism of Bacterial Growth

    Science.gov (United States)

    Ainiwaer, Ailiyasi

    2011-10-01

    There has been increasing concern from the public about personal health due to the significant rise in the daily use of electrical devices such as cell phones, radios, computers, GPS, video games and television. All of these devices create electromagnetic (EM) fields, which are simply magnetic and electric fields surrounding the appliances that simultaneously affect the human bio-system. Although these can affect the human system, obstacles can easily shield or weaken the electrical fields; however, magnetic fields cannot be weakened and can pass through walls, human bodies and most other objects. The present study was conducted to examine the possible effects of bacteria when exposed to magnetic fields. The results indicate that a strong causal relationship is not clear, since different magnetic fields affect the bacteria differently, with some causing an increase in bacterial cells, and others causing a decrease in the same cells. This phenomenon has yet to be explained, but the current study attempts to offer a mathematical explanation for this occurrence. The researchers added cultures to the magnetic fields to examine any effects to ion transportation. Researchers discovered ions such as potassium and sodium are affected by the magnetic field. A formula is presented in the analysis section to explain this effect.

  1. Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments

    DEFF Research Database (Denmark)

    Schippers, A.; Jørgensen, BB

    2002-01-01

    Pyrite (FeS2) and iron monosulfide (FeS) play a central role in the sulfur and iron cycles of marine sediments, They may be buried in the sediment or oxidized by O-2 after transport by bioturbation to the sediment surface. FeS2 and FeS may also be oxidized within the anoxic sediment in which NO3-...

  2. Like Iron in the Blood of the People: The Requirement for Heme Trafficking in Iron Metabolism

    OpenAIRE

    Iqbal eHamza; Tamara eKorolnek

    2014-01-01

    Heme is an iron-containing porphyrin ring that serves as a prosthetic group in proteins that function in diverse metabolic pathways. Heme is also a major source of bioavailable iron in the human diet. While the synthesis of heme has been well-characterized, the pathways for heme trafficking remain poorly understood. It is likely that heme transport across membranes is highly regulated, as free heme is toxic to cells. This review outlines the requirement for heme delivery to various subcellula...

  3. Like iron in the blood of the people: the requirement for heme trafficking in iron metabolism

    OpenAIRE

    Korolnek, Tamara; Hamza, Iqbal

    2014-01-01

    Heme is an iron-containing porphyrin ring that serves as a prosthetic group in proteins that function in diverse metabolic pathways. Heme is also a major source of bioavailable iron in the human diet. While the synthesis of heme has been well-characterized, the pathways for heme trafficking remain poorly understood. It is likely that heme transport across membranes is highly regulated, as free heme is toxic to cells. This review outlines the requirement for heme delivery to various subcellula...

  4. Enhanced sensitivity of oceanic CO2 uptake to dust deposition by iron-light colimitation

    Science.gov (United States)

    Nickelsen, Levin; Oschlies, Andreas

    2015-01-01

    The iron hypothesis suggests that in large areas of the ocean phytoplankton growth and thus photosynthetic CO2 uptake is limited by the micronutrient iron. Phytoplankton requires iron in particular for nitrate uptake, light harvesting, and electron transport in photosynthesis, suggesting a tight coupling of iron and light limitation. One important source of iron to the open ocean is dust deposition. Previous global biogeochemical modeling studies have suggested a low sensitivity of oceanic CO2 uptake to changes in dust deposition. Here we show that this sensitivity is increased significantly when iron-light colimitation, i.e., the impact of iron bioavailability on light-harvesting capabilities, is explicitly considered. Accounting for iron-light colimitation increases the shift of export production from tropical and subtropical regions to the higher latitudes of subpolar regions at high dust deposition and amplifies iron limitation at low dust deposition. Our results reemphasize the role of iron as a key limiting nutrient for phytoplankton.

  5. Subversion of membrane transport pathways by vacuolar pathogens

    OpenAIRE

    Alix, Eric; Mukherjee, Shaeri; Roy, Craig R.

    2011-01-01

    Mammalian phagocytes control bacterial infections effectively through phagocytosis, the process by which particles engulfed at the cell surface are transported to lysosomes for destruction. However, intracellular pathogens have evolved mechanisms to avoid this fate. Many bacterial pathogens use specialized secretion systems to deliver proteins into host cells that subvert signaling pathways controlling membrane transport. These bacterial effectors modulate the function of proteins that regula...

  6. [Roles of bacterial and mammalian siderophores in host-pathogen interactions].

    Science.gov (United States)

    Vaulont, Sophie; Schalk, Isabelle

    2015-01-01

    Iron is an essential nutriment for almost all forms of life, from bacteria to humans. Despite its key role in living organisms, iron becomes toxic at high concentrations. In the body, to circumvent this toxicity, almost all the intracellular iron is bound to proteins (especially to ferritin, a protein able to bind up to 4000 atoms of iron) and a small proportion (0.2% to 3%) to low molecular weight ligands (less than 2 kDa) constituting a free iron pool able to ensure the traffic of intracellular iron. A number of small molecules (citrate, phosphate, phospholipid, polypeptide) able to chelate iron, with variable affinities, have been known for a long time. In 2010, two teams have identified new mammal endogen chelators able to bind iron with similar chemical properties as bacterial siderophores. Recently, a few publications emphasized that most of the free iron present in the body cells is indeed linked to these siderophores, which play a key role in infected-host protection mechanisms during bacterial infections, through iron homeostasis and oxidative stress regulation. PMID:26340835

  7. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... Deficiency Anemia Explore Iron-Deficiency Anemia What Is... CAUSES WHO IS AT RISK SIGNS & SYMPTOMS DIAGNOSIS TREATMENTS ... less hemoglobin than normal. Iron-deficiency anemia can cause fatigue (tiredness), shortness of breath, chest pain, and ...

  8. Total iron binding capacity

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/003489.htm Total iron binding capacity To use the sharing features on this page, please enable JavaScript. Total iron binding capacity (TIBC) is a blood test to ...

  9. Iron in diet

    Science.gov (United States)

    Diet - iron; Ferric acid; Ferrous acid; Ferritin ... The human body needs iron to make the oxygen-carrying proteins hemoglobin and myoglobin. Hemoglobin is found in red blood cells and myoglobin is found ...

  10. Iron supplements (image)

    Science.gov (United States)

    The mineral iron is an essential nutrient for humans because it is part of blood cells, which carry oxygen to all body cells. There is no conclusive evidence that iron supplements contribute to heart attacks.

  11. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... and women are the two groups at highest risk for iron-deficiency anemia. Outlook Doctors usually can successfully ... With and Managing Iron-Deficiency Anemia 05/18/2011 This video— ...

  12. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... levels usually are due to blood loss, poor diet, or an inability to absorb enough iron from ... iron levels. Susan also made changes to her diet, such as focusing more on green leafy vegetables, ...

  13. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... This Content: NEXT >> Featured Video Living With and Managing Iron-Deficiency Anemia 05/18/2011 This video— ... treatment. For more information about living with and managing iron-deficiency anemia, go to the Health Topics ...

  14. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... iron-rich protein that carries oxygen from the lungs to the rest of the body. Iron-deficiency ... 2011 This video—presented by the National Heart, Lung, and Blood Institute, part of the National Institutes ...

  15. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... intravenous iron therapy. Rate This Content: NEXT >> Featured Video Living With and Managing Iron-Deficiency Anemia 05/18/2011 This video—presented by the National Heart, Lung, and Blood ...

  16. Vimentin in Bacterial Infections

    DEFF Research Database (Denmark)

    Mak, Tim N; Brüggemann, Holger

    2016-01-01

    -vimentin interactions are presented in this review: the role of vimentin in pathogen-binding on the cell surface and subsequent bacterial invasion and the interaction of cytosolic vimentin and intracellular pathogens with regards to innate immune signaling. Mechanistic insight is presented involving distinct bacterial......Despite well-studied bacterial strategies to target actin to subvert the host cell cytoskeleton, thus promoting bacterial survival, replication, and dissemination, relatively little is known about the bacterial interaction with other components of the host cell cytoskeleton, including intermediate...... filaments (IFs). IFs have not only roles in maintaining the structural integrity of the cell, but they are also involved in many cellular processes including cell adhesion, immune signaling, and autophagy, processes that are important in the context of bacterial infections. Here, we summarize the knowledge...

  17. Delivery of tobramycin coupled to iron oxide nanoparticles across the biofilm of mucoidal Pseudonomas aeruginosa and investigation of its efficacy

    Science.gov (United States)

    Armijo, Leisha M.; Kopciuch, Michael; Olszá½¹wka, Zuzia; Wawrzyniec, Stephen J.; Rivera, Antonio C.; Plumley, John B.; Cook, Nathaniel C.; Brandt, Yekaterina I.; Huber, Dale L.; Smolyakov, Gennady A.; Adolphi, Natalie L.; Smyth, Hugh D. C.; Osiński, Marek

    2014-03-01

    Pseudomonas aeruginosa bacterium is a deadly pathogen, leading to respiratory failure in cystic fibrosis and nosocomial pneumonia, and responsible for high mortality rates in these diseases. P. aeruginosa has inherent as well as acquired resistance to many drug classes. In this paper, we investigate the effectiveness of two classes; aminoglycoside (tobramycin) and fluoroquinolone (ciprofloxacin) administered alone, as well as conjugated to iron oxide (magnetite) nanoparticles. P. aeruginosa possesses the ability to quickly alter its genetics to impart resistance to the presence of new, unrecognized treatments. As a response to this impending public health threat, we have synthesized and characterized magnetite nanoparticles capped with biodegradable short-chain carboxylic acid derivatives conjugated to common antibiotic drugs. The functionalized nanoparticles may carry the drug past the mucus and biofilm layers to target the bacterial colonies via magnetic gradient-guided transport. Additionally, the magnetic ferrofluid may be used under application of an oscillating magnetic field to raise the local temperature, causing biofilm disruption, slowed growth, and mechanical disruption. These abilities of the ferrofluid would also treat multi-drug resistant strains, which appear to be increasing in many nosocomial as well as acquired opportunistic infections. In this in vitro model, we show that the iron oxide alone can also inhibit bacterial growth and biofilm formation.

  18. Iron Therapy for Preterm Infants

    OpenAIRE

    Rao, Raghavendra; Georgieff, Michael K.

    2009-01-01

    Preterm infants are at risk for both iron deficiency and iron overload. The role of iron in multiple organ functions suggests that iron supplementation is essential for the preterm infant. Conversely, the potential for iron overload and the poorly developed anti-oxidant measures in the preterm infant argues against indiscriminate iron supplementation in this population. The purpose of this article is to review the predisposing factors and consequences of iron deficiency and iron overload in t...

  19. Special thermite cast irons

    Directory of Open Access Journals (Sweden)

    Yu. Zhiguts

    2008-07-01

    Full Text Available The given paper deals with the problems of the synthesis of cast iron by metallothermy synthesis. On the basis of investigated method of calculations structures of charges have been arranged and cast iron has been synthesized further. Peculiarities metallothermic smelting were found, mechanical properties and structure of received cast iron were investigated and different technologies for cast iron receiving were worked out.

  20. Alternative iron making routes

    Energy Technology Data Exchange (ETDEWEB)

    Kaushik, P.; Sharma, T. [Indian School of Mines, Dhanbad (India)

    2002-07-01

    The versatile route of iron production 'blast furnace' technique is being replaced by widely accepted Corex technology, Midrex process using Fastmelt ironmaking, eco-friendly Romelt process, more innovative Ausmelt & Hismelt technology, TATA KORF Mini blast furnace improvement, 'quickest iron through Orbiting Plasma', Direct iron ore smelting process, Conred, AISI-Hyl, Inred processes, Direct iron ore reduction methods, their comparison and proposed modifications. 18 refs., 11 figs., 14 tabs.

  1. Iron deficiency and cognition

    OpenAIRE

    Hulthén, Lena

    2003-01-01

    Iron deficiency is the most prevalent nutritional disorder in the world. One of the most worrying consequences of iron deficiency in children is the alteration of behaviour and cognitive performance. In iron-deficient children, striking behavioural changes are observed, such as reduced attention span, reduced emotional responsiveness and low scores on tests of intelligence. Animal studies on nutritional iron deficiency show effects on learning ability that parallel the human studies. Despite ...

  2. Computational benchmark for deep penetration in iron

    International Nuclear Information System (INIS)

    A benchmark for calculation of neutron transport through iron is now available based upon a rigorous Monte Carlo treatment of ENDF/B-IV and ENDF/B-V cross sections. The currents, flux, and dose (from monoenergetic 2, 14, and 40 MeV sources) have been tabulated at various distances through the slab using a standard energy group structure. This tabulation is available in a Los Alamos Scientific Laboratory report. The benchmark is simple to model and should be useful for verifying the adequacy of one-dimensional transport codes and multigroup libraries for iron. This benchmark also provides useful insights regarding neutron penetration through iron and displays differences in fluxes calculated with ENDF/B-IV and ENDF/B-V data bases

  3. The structure of glutamate transporters shows channel-like features

    NARCIS (Netherlands)

    Slotboom, DJ; Konings, WN; Lolkema, JS

    2001-01-01

    Neuronal and glial glutamate transporters remove the excitatory neurotransmitter glutamate from the synaptic cleft and thus prevent neurotoxicity, The proteins belong to a large family of secondary transporters, which includes transporters from a variety of bacterial, archaeal and eukaryotic organis

  4. Two MATE Proteins Play a Role in Iron Efficiency in Soybean

    Science.gov (United States)

    Iron is a necessary but often limiting nutrient for plant growth and development. Soybeans grown on the high-pH calcareous soils are especially prone to developing iron deficiency chlorosis and suffering the resultant yield losses. Once iron is transported into the root, it must be translocated from...

  5. Arsenic enrichment in estuarine sediments-impact of iron and manganese mining

    Digital Repository Service at National Institute of Oceanography (India)

    Nair, M.; Joseph, T.; Balachandran, K.K.; Nair, K.K.C.; Paimpillii, J.S.

    River Mandovi and Zuari, Goa (west coast of India) are flowing through iron and manganese mining areas and are heavily used for iron and manganese ore transport. This region generates 25-30 million tons of mining rejects per year. The iron ore...

  6. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... the body. Iron-deficiency anemia usually develops over time if your body doesn't have enough iron ... Institutes of Health—shows how Susan, a full-time worker and student, has coped with having iron- ...

  7. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... body. Low iron levels usually are due to blood loss, poor diet, or an inability to absorb enough iron from food. Overview Iron-deficiency anemia is a common type of anemia . The term "anemia" usually refers to ...

  8. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... the NHLBI on Twitter. What Is Iron-Deficiency Anemia? Español Iron-deficiency anemia is a common, easily ... Featured Video Living With and Managing Iron-Deficiency Anemia 05/18/2011 This video—presented by the ...

  9. Iron-Deficiency Anemia

    Science.gov (United States)

    ... the NHLBI on Twitter. What Is Iron-Deficiency Anemia? Español Iron-deficiency anemia is a common, easily ... Featured Video Living With and Managing Iron-Deficiency Anemia 05/18/2011 This video—presented by the ...

  10. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... page from the NHLBI on Twitter. What Is Iron-Deficiency Anemia? Español Iron-deficiency anemia is a ... Content: NEXT >> Featured Video Living With and Managing Iron-Deficiency Anemia 05/18/2011 This video—presented ...

  11. Demonstrating Bacterial Flagella.

    Science.gov (United States)

    Porter, John R.; And Others

    1992-01-01

    Describes an effective laboratory method for demonstrating bacterial flagella that utilizes the Proteus mirabilis organism and a special harvesting technique. Includes safety considerations for the laboratory exercise. (MDH)

  12. Wastewater engineering applications of BioIronTech process based on the biogeochemical cycle of iron bioreduction and (bio)oxidation

    OpenAIRE

    Volodymyr Ivanov; Viktor Stabnikov; Chen Hong Guo; Olena Stabnikova; Zubair Ahmed; In S. Kim; Eng-Ban Shuy

    2014-01-01

    Bioreduction of Fe(III) and biooxidation of Fe(II) can be used in wastewater engineering as an innovative biotechnology BioIronTech, which is protected for commercial applications by US patent 7393452 and Singapore patent 106658 “Compositions and methods for the treatment of wastewater and other waste”. The BioIronTech process comprises the following steps: 1) anoxic bacterial reduction of Fe(III), for example in iron ore powder; 2) surface renovation of iron ore particles due to the formatio...

  13. The pupylation machinery is involved in iron homeostasis by targeting the iron storage protein ferritin.

    Science.gov (United States)

    Küberl, Andreas; Polen, Tino; Bott, Michael

    2016-04-26

    The balance of sufficient iron supply and avoidance of iron toxicity by iron homeostasis is a prerequisite for cellular metabolism and growth. Here we provide evidence that, in Actinobacteria, pupylation plays a crucial role in this process. Pupylation is a posttranslational modification in which the prokaryotic ubiquitin-like protein Pup is covalently attached to a lysine residue in target proteins, thus resembling ubiquitination in eukaryotes. Pupylated proteins are recognized and unfolded by a dedicated AAA+ ATPase (Mycobacterium proteasomal AAA+ ATPase; ATPase forming ring-shaped complexes). In Mycobacteria, degradation of pupylated proteins by the proteasome serves as a protection mechanism against several stress conditions. Other bacterial genera capable of pupylation such as Corynebacterium lack a proteasome, and the fate of pupylated proteins is unknown. We discovered that Corynebacterium glutamicum mutants lacking components of the pupylation machinery show a strong growth defect under iron limitation, which was caused by the absence of pupylation and unfolding of the iron storage protein ferritin. Genetic and biochemical data support a model in which the pupylation machinery is responsible for iron release from ferritin independent of degradation. PMID:27078093

  14. The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum

    Directory of Open Access Journals (Sweden)

    Hüser Andrea T

    2006-02-01

    Full Text Available Abstract Background The knowledge about complete bacterial genome sequences opens the way to reconstruct the qualitative topology and global connectivity of transcriptional regulatory networks. Since iron is essential for a variety of cellular processes but also poses problems in biological systems due to its high toxicity, bacteria have evolved complex transcriptional regulatory networks to achieve an effective iron homeostasis. Here, we apply a combination of transcriptomics, bioinformatics, in vitro assays, and comparative genomics to decipher the regulatory network of the iron-dependent transcriptional regulator DtxR of Corynebacterium glutamicum. Results A deletion of the dtxR gene of C. glutamicum ATCC 13032 led to the mutant strain C. glutamicum IB2103 that was able to grow in minimal medium only under low-iron conditions. By performing genome-wide DNA microarray hybridizations, differentially expressed genes involved in iron metabolism of C. glutamicum were detected in the dtxR mutant. Bioinformatics analysis of the genome sequence identified a common 19-bp motif within the upstream region of 31 genes, whose differential expression in C. glutamicum IB2103 was verified by real-time reverse transcription PCR. Binding of a His-tagged DtxR protein to oligonucleotides containing the 19-bp motifs was demonstrated in vitro by DNA band shift assays. At least 64 genes encoding a variety of physiological functions in iron transport and utilization, in central carbohydrate metabolism and in transcriptional regulation are controlled directly by the DtxR protein. A comparison with the bioinformatically predicted networks of C. efficiens, C. diphtheriae and C. jeikeium identified evolutionary conserved elements of the DtxR network. Conclusion This work adds considerably to our currrent understanding of the transcriptional regulatory network of C. glutamicum genes that are controlled by DtxR. The DtxR protein has a major role in controlling the

  15. Oral exposure to polystyrene nanoparticles affects iron absorption

    Science.gov (United States)

    Mahler, Gretchen J.; Esch, Mandy B.; Tako, Elad; Southard, Teresa L.; Archer, Shivaun D.; Glahn, Raymond P.; Shuler, Michael L.

    2012-04-01

    The use of engineered nanoparticles in food and pharmaceuticals is expected to increase, but the impact of chronic oral exposure to nanoparticles on human health remains unknown. Here, we show that chronic and acute oral exposure to polystyrene nanoparticles can influence iron uptake and iron transport in an in vitro model of the intestinal epithelium and an in vivo chicken intestinal loop model. Intestinal cells that are exposed to high doses of nanoparticles showed increased iron transport due to nanoparticle disruption of the cell membrane. Chickens acutely exposed to carboxylated particles (50 nm in diameter) had a lower iron absorption than unexposed or chronically exposed birds. Chronic exposure caused remodelling of the intestinal villi, which increased the surface area available for iron absorption. The agreement between the in vitro and in vivo results suggests that our in vitro intestinal epithelium model is potentially useful for toxicology studies.

  16. Shuffling bacterial metabolomes

    OpenAIRE

    Thomason, Brendan; Read, Timothy D.

    2006-01-01

    Horizontal gene transfer (HGT) has a far more significant role than gene duplication in bacterial evolution. This has recently been illustrated by work demonstrating the importance of HGT in the emergence of bacterial metabolic networks, with horizontally acquired genes being placed in peripheral pathways at the outer branches of the networks.

  17. Vimentin in Bacterial Infections.

    Science.gov (United States)

    Mak, Tim N; Brüggemann, Holger

    2016-01-01

    Despite well-studied bacterial strategies to target actin to subvert the host cell cytoskeleton, thus promoting bacterial survival, replication, and dissemination, relatively little is known about the bacterial interaction with other components of the host cell cytoskeleton, including intermediate filaments (IFs). IFs have not only roles in maintaining the structural integrity of the cell, but they are also involved in many cellular processes including cell adhesion, immune signaling, and autophagy, processes that are important in the context of bacterial infections. Here, we summarize the knowledge about the role of IFs in bacterial infections, focusing on the type III IF protein vimentin. Recent studies have revealed the involvement of vimentin in host cell defenses, acting as ligand for several pattern recognition receptors of the innate immune system. Two main aspects of bacteria-vimentin interactions are presented in this review: the role of vimentin in pathogen-binding on the cell surface and subsequent bacterial invasion and the interaction of cytosolic vimentin and intracellular pathogens with regards to innate immune signaling. Mechanistic insight is presented involving distinct bacterial virulence factors that target vimentin to subvert its function in order to change the host cell fate in the course of a bacterial infection. PMID:27096872

  18. Prevention of bacterial adhesion

    DEFF Research Database (Denmark)

    Klemm, Per; Vejborg, Rebecca Munk; Hancock, Viktoria

    2010-01-01

    Management of bacterial infections is becoming increasingly difficult due to the emergence and increasing prevalence of bacterial pathogens that are resistant to available antibiotics. Conventional antibiotics generally kill bacteria by interfering with vital cellular functions, an approach that ...... become valuable weapons for preventing pathogen contamination and fighting infectious diseases in the future....

  19. Vimentin in Bacterial Infections

    Directory of Open Access Journals (Sweden)

    Tim N. Mak

    2016-04-01

    Full Text Available Despite well-studied bacterial strategies to target actin to subvert the host cell cytoskeleton, thus promoting bacterial survival, replication, and dissemination, relatively little is known about the bacterial interaction with other components of the host cell cytoskeleton, including intermediate filaments (IFs. IFs have not only roles in maintaining the structural integrity of the cell, but they are also involved in many cellular processes including cell adhesion, immune signaling, and autophagy, processes that are important in the context of bacterial infections. Here, we summarize the knowledge about the role of IFs in bacterial infections, focusing on the type III IF protein vimentin. Recent studies have revealed the involvement of vimentin in host cell defenses, acting as ligand for several pattern recognition receptors of the innate immune system. Two main aspects of bacteria-vimentin interactions are presented in this review: the role of vimentin in pathogen-binding on the cell surface and subsequent bacterial invasion and the interaction of cytosolic vimentin and intracellular pathogens with regards to innate immune signaling. Mechanistic insight is presented involving distinct bacterial virulence factors that target vimentin to subvert its function in order to change the host cell fate in the course of a bacterial infection.

  20. Enhanced formation of silver nanoparticles in Ag+-NOM-iron(II, III) systems and antibacterial activity studies.

    Science.gov (United States)

    Adegboyega, Nathaniel F; Sharma, Virender K; Siskova, Karolina M; Vecerova, Renata; Kolar, Milan; Zbořil, Radek; Gardea-Torresdey, Jorge L

    2014-03-18

    This work reports the role of iron redox pair (Fe(3+)/Fe(2+)) in the formation of naturally occurring silver nanoparticles (AgNPs) in the aquatic environment. The results showed that Fe(3+) or Fe(2+) ions in the mixtures of Ag(+) and natural organic matter enhanced the formation of AgNPs. The formation of AgNPs depended on pH and types of organic matter. Increase in pH enhanced the formation of AgNPs, and humic acids as ligands showed higher formation of AgNPs compared to fulvic acids. The observed results were described by considering the potentials of redox pairs of silver and iron species and the possible species involved in reducing silver ions to AgNPs. Dynamic light scattering and transmission electron microscopy measurements of AgNPs revealed mostly bimodal size distribution with decrease in size of AgNPs due to iron species in the reaction mixture. Minimum inhibitory concentration of AgNPs needed to inhibit the growth of various bacterial species suggested the role of surfaces of tested Gram-positive and Gram-negative bacteria. Stability study of AgNPs, formed in Ag(+)-humic acid/fulvic acids-Fe(3+) mixtures over a period of several months showed high stability of the particles with significant increase in surface plasmon resonance peak. The environmental implications of the results in terms of fate, transport, and ecotoxicity of organic-coated AgNPs are briefly presented. PMID:24524189

  1. Pathophysiology in Medicine: Hepcidin and iron regulation in health and disease

    OpenAIRE

    Means, Robert T.

    2013-01-01

    A decade ago hepcidin, an antimicrobial peptide with iron-regulatory properties, was discovered and proposed as playing a significant role in the pathogenesis of the anemia of chronic disease. Subsequent studies have demonstrated that hepcidin is the keystone of the linked systems of iron balance and iron transport in health and in disease. The definition of the role of hepcidin and of its regulation has permitted the mechanisms of disorders of iron homeostasis to be understood at a molecular...

  2. Benchmark analysis of MCNP trademark ENDF/B-VI iron

    International Nuclear Information System (INIS)

    The MCNP ENDF/B-VI iron cross-section data was subjected to four benchmark studies as part of the Hiroshima/Nagasaki dose re-evaluation for the National Academy of Science and the Defense Nuclear Agency. The four benchmark studies were: (1) the iron sphere benchmarks from the Lawrence Livermore Pulsed Spheres; (2) the Oak Ridge National Laboratory Fusion Reactor Shielding Benchmark; (3) a 76-cm diameter iron sphere benchmark done at the University of Illinois; (4) the Oak Ridge National Laboratory Benchmark for Neutron Transport through Iron. MCNP4A was used to model each benchmark and computational results from the ENDF/B-VI iron evaluations were compared to ENDF/B-IV, ENDF/B-V, the MCNP Recommended Data Set (which includes Los Alamos National Laboratory Group T-2 evaluations), and experimental data. The results show that the ENDF/B-VI iron evaluations are as good as, or better than, previous data sets

  3. Ceruloplasmin-ferroportin system of iron traffic in vertebrates

    Institute of Scientific and Technical Information of China (English)

    Giovanni; Musci; Fabio; Polticelli; Maria; Carmela; Bonaccorsi; di; Patti

    2014-01-01

    Safe trafficking of iron across the cell membrane is a delicate process that requires specific protein carriers. While many proteins involved in iron uptake by cells are known, only one cellular iron export protein has been identified in mammals: ferroportin(SLC40A1). Ceruloplasmin is a multicopper enzyme endowed with ferroxidase activity that is found as a soluble isoform in plasma or as a membrane-associated isoform in specific cell types. According to the currently accepted view, ferrous iron transported out of the cell by ferroportin would be safely oxidized by ceruloplasmin to facilitate loading on transferrin. Therefore, the ceruloplasminferroportin system represents the main pathway for cellular iron egress and it is responsible for physiological regulation of cellular iron levels. The most recent findings regarding the structural and functional features of ceruloplasmin and ferroportin and their relationship will be described in this review.

  4. Nitric Oxide Improves Internal Iron Availability in Plants1

    Science.gov (United States)

    Graziano, Magdalena; Beligni, María Verónica; Lamattina, Lorenzo

    2002-01-01

    Iron deficiency impairs chlorophyll biosynthesis and chloroplast development. In leaves, most of the iron must cross several biological membranes to reach the chloroplast. The components involved in the complex internal iron transport are largely unknown. Nitric oxide (NO), a bioactive free radical, can react with transition metals to form metal-nitrosyl complexes. Sodium nitroprusside, an NO donor, completely prevented leaf interveinal chlorosis in maize (Zea mays) plants growing with an iron concentration as low as 10 μm Fe-EDTA in the nutrient solution. S-Nitroso-N-acetylpenicillamine, another NO donor, as well as gaseous NO supply in a translucent chamber were also able to revert the iron deficiency symptoms. A specific NO scavenger, 2-(4-carboxy-phenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide, blocked the effect of the NO donors. The effect of NO treatment on the photosynthetic apparatus of iron-deficient plants was also studied. Electron micrographs of mesophyll cells from iron-deficient maize plants revealed plastids with few photosynthetic lamellae and rudimentary grana. In contrast, in NO-treated maize plants, mesophyll chloroplast appeared completely developed. NO treatment did not increase iron content in plant organs, when expressed in a fresh matter basis, suggesting that root iron uptake was not enhanced. NO scavengers 2-(4-carboxy-phenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide and methylene blue promoted interveinal chlorosis in iron-replete maize plants (growing in 250 μm Fe-EDTA). Even though results support a role for endogenous NO in iron nutrition, experiments did not establish an essential role. NO was also able to revert the chlorotic phenotype of the iron-inefficient maize mutants yellow stripe1 and yellow stripe3, both impaired in the iron uptake mechanisms. All together, these results support a biological action of NO on the availability and/or delivery of metabolically active iron within the plant. PMID:12481068

  5. Neisseria gonorrhoeae modulates iron-limiting innate immune defenses in macrophages.

    Directory of Open Access Journals (Sweden)

    Susu M Zughaier

    Full Text Available Neisseria gonorrhoeae is a strict human pathogen that causes the sexually transmitted infection termed gonorrhea. The gonococcus can survive extracellularly and intracellularly, but in both environments the bacteria must acquire iron from host proteins for survival. However, upon infection the host uses a defensive response by limiting the bioavailability of iron by a number of mechanisms including the enhanced expression of hepcidin, the master iron-regulating hormone, which reduces iron uptake from the gut and retains iron in macrophages. The host also secretes the antibacterial protein NGAL, which sequesters bacterial siderophores and therefore inhibits bacterial growth. To learn whether intracellular gonococci can subvert this defensive response, we examined expression of host genes that encode proteins involved in modulating levels of intracellular iron. We found that N. gonorrhoeae can survive in association (tightly adherent and intracellular with monocytes and macrophages and upregulates a panel of its iron-responsive genes in this environment. We also found that gonococcal infection of human monocytes or murine macrophages resulted in the upregulation of hepcidin, NGAL, and NRAMP1 as well as downregulation of the expression of the gene encoding the short chain 3-hydroxybutyrate dehydrogenase (BDH2; BDH2 catalyzes the production of the mammalian siderophore 2,5-DHBA involved in chelating and detoxifying iron. Based on these findings, we propose that N. gonorrhoeae can subvert the iron-limiting innate immune defenses to facilitate iron acquisition and intracellular survival.

  6. Role of dust alkalinity in acid mobilization of iron

    Directory of Open Access Journals (Sweden)

    A. Ito

    2010-10-01

    Full Text Available Atmospheric processing of mineral aerosols by acid gases (e.g., SO2, HNO3, N2O5, and HCl may play a key role in the transformation of insoluble iron (Fe in the oxidized or ferric (III form to soluble forms (e.g., Fe(II, inorganic soluble species of Fe(III, and organic complexes of iron. On the other hand, mineral dust particles have a potential of neutralizing the acidic species due to the alkaline buffer ability of carbonate minerals (e.g., CaCO3 and MgCO3. Here we demonstrate the impact of dust alkalinity on the acid mobilization of iron in a three-dimensional aerosol chemistry transport model that includes a mineral dissolution scheme. In our model simulations, most of the alkaline dust minerals cannot be entirely consumed by inorganic acids during the transport across the North Pacific Ocean. As a result, the inclusion of alkaline compounds in aqueous chemistry substantially limits the iron dissolution during the long-range transport to the North Pacific Ocean: only a small fraction of iron (<0.2% dissolves from hematite in the coarse-mode dust aerosols with 0.45% soluble iron initially. On the other hand, a significant fraction of iron (1–2% dissolves in the fine-mode dust aerosols due to the acid mobilization of the iron-containing minerals externally mixed with carbonate minerals. Consequently, the model quantitatively reproduces higher iron solubility in smaller particles as suggested by measurements over the Pacific Ocean. It implies that the buffering effect of alkaline content in dust aerosols might help to explain the inverse relationship between aerosol iron solubility and particle size. We also demonstrate that the iron solubility is sensitive to the chemical specification of iron-containing minerals in dust. Compared with the dust sources, soluble iron from combustion sources contributes to a relatively marginal effect for deposition of soluble iron over the North

  7. Characterization and Localization of Iron-Oxidizing Proteins in Acid Mine Drainage Biofilms

    Science.gov (United States)

    Chan, C. S.; Thelen, M. P.; Hwang, M.; Banfield, J. F.

    2005-12-01

    As molecular geomicrobiologists, we are interested in the microbially-produced molecules that effect geochemical transformations, particularly proteins involved in lithotrophic energy generation. We have identified two such proteins produced by Leptospirillum group II microbes, which dominate biofilms floating on acidic waters in the Richmond Mine at Iron Mountain, CA. Leptospirillum generates energy by iron oxidation, producing the ferric iron catalyst responsible for pyrite oxidation, subsequent acid generation and toxic metal release. We have shown that a small (~16 kDa) soluble protein, cytochrome-579, extracted from environmental biofilm samples is capable of iron oxidation in vitro, consistent with prior studies on similar cytochromes from L. ferriphilum and ferrooxidans (Blake et al., 1993; Hart et al., 1991). The abundance of cyt579 and its ability to oxidize iron makes it a key link between microbial metabolism and acid mine drainage. Given the importance of cyt579 in biofilm sustenance as well as acid generation, we want to understand more about its distribution and also the architecture of the biofilm environment in which it functions. Using transmission electron microscopy (TEM) on ultrathin sections, we observe biofilms as thin as 15 microns with densely-packed cells in a matrix of polymers. To localize cyt579 in the biofilm, we purified the protein and developed antibodies for immunolabeling. The antibodies were shown to be highly specific for cyt579 using Western blots of whole biofilm lysate. Fluorescence- and gold-labeled secondary antibodies were used to visualize immunolabeled biofilms by confocal laser scanning microscopy and TEM, respectively. Preliminary results suggest that the cytochrome is on the bacterial cell surface or in the periplasm but not throughout the biofilm, as we had postulated due to the abundance of cytochrome in extracellular fractions of biofilm samples. These localization studies will be helpful in determining the

  8. Bacterial metabolism in biofilm consortia: Consequences for potential ennoblement

    Energy Technology Data Exchange (ETDEWEB)

    Chandrasekaran, P.; Dexter, S.C. [Univ. of Delaware, Lewes, DE (United States). Graduate College of Marine Studies

    1994-12-31

    Platinum metal coupons were used in studying the mechanism of ennoblement in the presence of mature seawater biofilms. Presence of a bacterial consortia, rather than any single organism is determined to be necessary for ennoblement. Millimolar concentrations of iron and manganese were measured in biofilms formed over platinum. EDAX and ICP techniques were used for measuring the chemistry of particles in a biofilm. Utilization of various electron acceptors like oxygen, iron, manganese, etc. are thought to be important for ennoblement to take place over platinum. Heavy metal accumulation is hypothesized to favor the low pH mechanism of ennoblement due to heavy metal hydrolysis. Monoculture biofilms cannot support ennoblement on platinum.

  9. Exploring Microbial Iron Oxidation in Wetland Soils

    Science.gov (United States)

    Wang, J.; Muyzer, G.; Bodelier, P. L. E.; den Oudsten, F.; Laanbroek, H. J.

    2009-04-01

    Iron is one of the most abundant elements on earth and is essential for life. Because of its importance, iron cycling and its interaction with other chemical and microbial processes has been the focus of many studies. Iron-oxidizing bacteria (FeOB) have been detected in a wide variety of environments. Among those is the rhizosphere of wetland plants roots which release oxygen into the soil creating suboxic conditions required by these organisms. It has been reported that in these rhizosphere microbial iron oxidation proceeds up to four orders of magnitude faster than strictly abiotic oxidation. On the roots of these wetland plants iron plaques are formed by microbial iron oxidation which are involved in the sequestering of heavy metals as well organic pollutants, which of great environmental significance.Despite their important role being catalysts of iron-cycling in wetland environments, little is known about the diversity and distribution of iron-oxidizing bacteria in various environments. This study aimed at developing a PCR-DGGE assay enabling the detection of iron oxidizers in wetland habitats. Gradient tubes were used to enrich iron-oxidizing bacteria. From these enrichments, a clone library was established based on the almost complete 16s rRNA gene using the universal bacterial primers 27f and 1492r. This clone library consisted of mainly α- and β-Proteobacteria, among which two major clusters were closely related to Gallionella spp. Specific probes and primers were developed on the basis of this 16S rRNA gene clone library. The newly designed Gallionella-specific 16S rRNA gene primer set 122f/998r was applied to community DNA obtained from three contrasting wetland environments, and the PCR products were used in denaturing gradient gel electrophoresis (DGGE) analysis. A second 16S rRNA gene clone library was constructed using the PCR products from one of our sampling sites amplified with the newly developed primer set 122f/998r. The cloned 16S rRNA gene

  10. Dynamic fracture behavior of nodular cast iron

    International Nuclear Information System (INIS)

    Ferritic nodular cast iron has been found to be a much tougher material than previously believed based on Charpy impact test results. As a result this material is being considered as a substitute for Stainless Steel in nuclear waste transport containers. We have determined Klc and Kld values for nodular cast iron with varying values of silicon and percentage of pearlite in the matrix. Regular V-notch charpy bars and fatigue precracked charpy bars have been tested to determine the initiation and propagation energy and the effect of notch acuity on transition temperature. (author)

  11. PfsR is a key regulator of iron homeostasis in Synechocystis PCC 6803.

    Directory of Open Access Journals (Sweden)

    Dan Cheng

    Full Text Available Iron is an essential cofactor in numerous cellular processes. The iron deficiency in the oceans affects the primary productivity of phytoplankton including cyanobacteria. In this study, we examined the function of PfsR, a TetR family transcriptional regulator, in iron homeostasis of the cyanobacterium Synechocystis PCC 6803. Compared with the wild type, the pfsR deletion mutant displayed stronger tolerance to iron limitation and accumulated significantly more chlorophyll a, carotenoid, and phycocyanin under iron-limiting conditions. The mutant also maintained more photosystem I and photosystem II complexes than the wild type after iron deprivation. In addition, the activities of photosystem I and photosystem II were much higher in pfsR deletion mutant than in wild-type cells under iron-limiting conditions. The transcripts of pfsR were enhanced by iron limitation and inactivation of the gene affected pronouncedly expression of fut genes (encoding a ferric iron transporter, feoB (encoding a ferrous iron transporter, bfr genes (encoding bacterioferritins, ho genes (encoding heme oxygenases, isiA (encoding a chlorophyll-binding protein, and furA (encoding a ferric uptake regulator. The iron quota in pfsR deletion mutant cells was higher than in wild-type cells both before and after exposure to iron limitation. Electrophoretic mobility shift assays showed that PfsR bound to its own promoter and thereby auto-regulated its own expression. These data suggest that PfsR is a critical regulator of iron homeostasis.

  12. Hunger for iron: the alternative siderophore iron scavenging systems in highly virulent Yersinia.

    Directory of Open Access Journals (Sweden)

    Alexander eRakin

    2012-11-01

    Full Text Available Low molecular weight siderophores are used by many living organisms to scavenge scarcely available ferric iron. Presence of at least a single siderophore-based iron acquisition system is usually acknowledged as a virulence-associated trait and a prerequisite to become an efficient and successful pathogen. Currently it is assumed that yersiniabactin (Ybt is the solely functional endogenous siderophore iron uptake system in highly virulent Yersinia (Yersinia pestis, Y. pseudotuberculosis and Y. enterocolitica biotype 1B. Genes responsible for biosynthesis, transport and regulation of the yersiniabactin (ybt production are clustered on a mobile genetic element, the High Pathogenicity Island (HPI that is responsible for broad dissemination of the ybt genes in Enterobacteriaceae. However, the ybt gene cluster is absent from nearly half of Y. pseudotuberculosis O3 isolates and epidemic Y. pseudotuberculosis O1 isolates responsible for the Far East Scarlet-like Fever. Several potential siderophore-mediated iron uptake gene clusters are documented in Yersinia genomes, however neither of them have been proven to be functional. It has been suggested that at least two siderophores alternative to Ybt may operate in the highly virulent Yersinia pestis / Y. pseudotuberculosis group, and are referred to as pseudochelin (Pch and yersiniachelin (Ych. Furthermore, most sporadic Y. pseudotuberculosis O1 strains possess gene clusters encoding all three iron scavenging systems. Thus, the Ybt system appears not to be the sole endogenous siderophore iron uptake system in the highly virulent yersiniae and may be efficiently substituted and / or supplemented by alternative iron scavenging systems.

  13. Colour Metallography of Cast Iron

    Institute of Scientific and Technical Information of China (English)

    Zhou Jiyang; Liu Jincheng

    2010-01-01

    @@ Chapter 3 Spheroidal Graphite Cast Iron(I) Spheroidal Graphite Cast Iron, SG iron in short, refers to the cast iron in which graphite precipitates as spheroidal shape during solidification of liquid iron. The graphite in common commercial cast iron can only be changed from flake to spheroidal shape by spheroidising treatment. Since spheroidal graphite reduces the cutting effect of stress concentration, the metal matrix strength of SG iron can be applied around 70%-90%, thus the mechanical property of SG iron is significantly superior to other cast irons;even the tensile strength of SG iron is higher than that carbon steel.

  14. Specific amplification of iron receptor genes in Xylella fastidiosa strains from different hosts

    Directory of Open Access Journals (Sweden)

    Flávia Teresa Hansen Pacheco

    2006-01-01

    Full Text Available Bacterial production of siderophores may involve specific genes related to nonribosomal peptide and polyketide biosynthesis, which have not been fully identified in the genome of Xylella fastidiosa strain 9a5c. However, a search for siderophore-related genes in strain 9a5c indicated five membrane receptors, including siderophore, ferrichrome-iron and hemin receptors. All these biomolecules are thought to be associated with iron transport and utilization. Eighty isolates obtained from citrus orchards containing trees that developed citrus variegated chlorosis (CVC were screened for siderophore production. The results demonstrated that only 10 of the isolates did not produce siderophores. Additional strains obtained from coffee, almond, mulberry, elm, ragweed, periwinkle and grape also infected by X. fastidiosa were also shown by the chromeazurol bioassay to produce siderophores. In order to correlate siderophore production with the presence of siderophore-related genes, a polymerase chain reaction (PCR was developed using specific primers for the catechol-type ferric enterobactin receptor (pfeA and the hydroxamate-type ferrisiderophore receptor (fiuA genes of strain 9a5c. The PCR results confirmed our hypothesis by demonstrating that amplification products were detected in all strains except for those isolates that did not produce siderophores.

  15. Enhancement of anaerobic hydrogen production by iron and nickel

    Energy Technology Data Exchange (ETDEWEB)

    Karadag, Dogan; Puhakka, Jaakko A. [Department of Chemistry and Bioengineering, Tampere University of Technology, Tampere (Finland)

    2010-08-15

    The effects of iron and nickel on hydrogen (H{sub 2}) production were investigated in a glucose-fed anaerobic Continuous Flow Stirred Tank Reactor (ACSTR). Both iron and nickel improved the reactor performance and H{sub 2} production was enhanced by 71% with the sole iron or nickel supplementation. In all cases, H{sub 2} production yield was increased by lowering both ethanol and total metabolites production and increasing butyrate production. Furthermore, iron and nickel slightly increased biomass production while glucose degradation decreased with the supplementation of nickel. Dynamic changes in bacterial composition as analyzed by 16S rRNA gene-targeted denaturing gradient gel electrophoresis (DGGE) revealed that hydrogen was produced mainly by Clostridium butyricum strains and that nickel addition decreased the microbial diversity. (author)

  16. Colour Metallography of Cast Iron

    Institute of Scientific and Technical Information of China (English)

    Zhou Jiyang; Liu Jincheng

    2010-01-01

    @@ Spheroidal Graphite Cast Iron(Ⅳ) 3.7 Segregation of SG iron The non-uniform distribution of solute elements during solidification results in the micro segregation of SG iron.As for the redistribution of elements in the phases of the solidification structure,there is no intrinsic difference between SG iron and grey iron[132].

  17. Iron regulation by hepcidin

    OpenAIRE

    Zhao, Ningning; Zhang, An-Sheng; Enns, Caroline A

    2013-01-01

    Hepcidin is a key hormone that is involved in the control of iron homeostasis in the body. Physiologically, hepcidin is controlled by iron stores, inflammation, hypoxia, and erythropoiesis. The regulation of hepcidin expression by iron is a complex process that requires the coordination of multiple proteins, including hemojuvelin, bone morphogenetic protein 6 (BMP6), hereditary hemochromatosis protein, transferrin receptor 2, matriptase-2, neogenin, BMP receptors, and transferrin. Misregulati...

  18. Iron deficiency anemia Review

    OpenAIRE

    Yıldız, İnci

    2009-01-01

    Iron deficiency anemia is the most frequent and widespread anemia around the world Its prevalence is increased in infants and adolescent girls The etiologic factors may vary but anemia is essentially related to iron deficient nutrition blood loss and malabsorption Children may have paleness cardiovascular and neurologic impacts of anemia pica epithelial changes as koilonychia glossitis angular stomatitis Treatment is by oral or parenteral supplementation of iron Turk Arch Ped 2009; 44 Suppl: ...

  19. Iron overload and immunity

    Institute of Scientific and Technical Information of China (English)

    Gra(c)a Porto; Maria De Sousa

    2007-01-01

    Progress in the characterization of genes involved in the control of iron homeostasis in humans and in mice has improved the definition of iron overload and of the cells affected by it. The cell involved in iron overload with the greatest effect on immunity is the macrophage.Intriguing evidence has emerged, however, in the last 12 years indicating that parenchymal iron overload is linked to genes classically associated with the immune system. This review offers an update of the genes and proteins relevant to iron metabolism expressed in cells of the innate immune system, and addresses the question of how this system is affected in clinical situations of iron overload. The relationship between iron and the major cells of adaptive immunity, the T lymphocytes,will also be reviewed. Most studies addressing this last question in humans were performed in the clinical model of Hereditary Hemochromatosis. Data will also be reviewed demonstrating how the disruption of molecules essentially involved in adaptive immune responses result in the spontaneous development of iron overload and how they act as modifiers of iron overload.

  20. Recalling the Iron Girls

    Institute of Scientific and Technical Information of China (English)

    1998-01-01

    The phrase "iron girl" is symbolic of an era. Widely used in the 1960s and the early 1970s, it was a term that described women who, in the spirit of sexual equality, found in themselves a physical strength that surpassed their psychologi cal expectations. With their might and power, they proved to society that women could do everything that men could. The title of "iron girl" was their pride.The well-known writer Fan Xiaoqing, was one such iron girl. She says the "iron girls" were nothing less than a quest for perfection.

  1. Metabolic Requirements of Escherichia coli in Intracellular Bacterial Communities during Urinary Tract Infection Pathogenesis

    Science.gov (United States)

    Conover, Matt S.; Hadjifrangiskou, Maria; Palermo, Joseph J.; Hibbing, Michael E.; Dodson, Karen W.

    2016-01-01

    ABSTRACT Uropathogenic Escherichia coli (UPEC) is the primary etiological agent of over 85% of community-acquired urinary tract infections (UTIs). Mouse models of infection have shown that UPEC can invade bladder epithelial cells in a type 1 pilus-dependent mechanism, avoid a TLR4-mediated exocytic process, and escape into the host cell cytoplasm. The internalized UPEC can clonally replicate into biofilm-like intracellular bacterial communities (IBCs) of thousands of bacteria while avoiding many host clearance mechanisms. Importantly, IBCs have been documented in urine from women and children suffering acute UTI. To understand this protected bacterial niche, we elucidated the transcriptional profile of bacteria within IBCs using microarrays. We delineated the upregulation within the IBC of genes involved in iron acquisition, metabolism, and transport. Interestingly, lacZ was highly upregulated, suggesting that bacteria were sensing and/or utilizing a galactoside for metabolism in the IBC. A ΔlacZ strain displayed significantly smaller IBCs than the wild-type strain and was attenuated during competitive infection with a wild-type strain. Similarly, a galK mutant resulted in smaller IBCs and attenuated infection. Further, analysis of the highly upregulated gene yeaR revealed that this gene contributes to oxidative stress resistance and type 1 pilus production. These results suggest that bacteria within the IBC are under oxidative stress and, consistent with previous reports, utilize nonglucose carbon metabolites. Better understanding of the bacterial mechanisms used for IBC development and establishment of infection may give insights into development of novel anti-virulence strategies. PMID:27073089

  2. Iron metabolism and iron supplementation in cancer patients.

    Science.gov (United States)

    Ludwig, Heinz; Evstatiev, Rayko; Kornek, Gabriela; Aapro, Matti; Bauernhofer, Thomas; Buxhofer-Ausch, Veronika; Fridrik, Michael; Geissler, Dietmar; Geissler, Klaus; Gisslinger, Heinz; Koller, Elisabeth; Kopetzky, Gerhard; Lang, Alois; Rumpold, Holger; Steurer, Michael; Kamali, Houman; Link, Hartmut

    2015-12-01

    Iron deficiency and iron deficiency-associated anemia are common complications in cancer patients. Most iron deficient cancer patients present with functional iron deficiency (FID), a status with adequate storage iron, but insufficient iron supply for erythroblasts and other iron dependent tissues. FID is the consequence of the cancer-associated cytokine release, while in absolute iron deficiency iron stores are depleted resulting in similar but often more severe symptoms of insufficient iron supply. Here we present a short review on the epidemiology, pathophysiology, diagnosis, clinical symptoms, and treatment of iron deficiency in cancer patients. Special emphasis is given to intravenous iron supplementation and on the benefits and limitations of different formulations. Based on these considerations and recommendations from current international guidelines we developed recommendations for clinical practice and classified the level of evidence and grade of recommendation according to the principles of evidence-based medicine. PMID:26373748

  3. Bacterial Wound Culture

    Science.gov (United States)

    ... Home Visit Global Sites Search Help? Bacterial Wound Culture Share this page: Was this page helpful? Also known as: Aerobic Wound Culture; Anaerobic Wound Culture Formal name: Culture, wound Related ...

  4. Bacterial Meningitis in Infants

    Directory of Open Access Journals (Sweden)

    J Gordon Millichap

    2004-04-01

    Full Text Available A retrospective study of 80 infantile patients (ages 30-365 days; 47 male, 33 female with culture-proven bacterial meningitis seen over a 16 year period (1986-2001 is reported from Taiwan.

  5. Review on iron and its importance for human health

    Directory of Open Access Journals (Sweden)

    Nazanin Abbaspour

    2014-01-01

    Full Text Available It is well-known that deficiency or over exposure to various elements has noticeable effects on human health. The effect of an element is determined by several characteristics, including absorption, metabolism, and degree of interaction with physiological processes. Iron is an essential element for almost all living organisms as it participates in a wide variety of metabolic processes, including oxygen transport, deoxyribonucleic acid (DNA synthesis, and electron transport. However, as iron can form free radicals, its concentration in body tissues must be tightly regulated because in excessive amounts, it can lead to tissue damage. Disorders of iron metabolism are among the most common diseases of humans and encompass a broad spectrum of diseases with diverse clinical manifestations, ranging from anemia to iron overload, and possibly to neurodegenerative diseases. In this review, we discuss the latest progress in studies of iron metabolism and bioavailability, and our current understanding of human iron requirement and consequences and causes of iron deficiency. Finally, we discuss strategies for prevention of iron deficiency.

  6. Calibrating bacterial evolution

    OpenAIRE

    Ochman, Howard; Elwyn, Susannah; Moran, Nancy A

    1999-01-01

    Attempts to calibrate bacterial evolution have relied on the assumption that rates of molecular sequence divergence in bacteria are similar to those of higher eukaryotes, or to those of the few bacterial taxa for which ancestors can be reliably dated from ecological or geological evidence. Despite similarities in the substitution rates estimated for some lineages, comparisons of the relative rates of evolution at different classes of nucleotide sites indicate no basis for their universal appl...

  7. Molecular control of vertebrate iron homeostasis by iron regulatory proteins

    OpenAIRE

    Wallander, Michelle L.; Leibold, Elizabeth A.; Eisenstein, Richard S.

    2006-01-01

    Both deficiencies and excesses of iron represent major public health problems throughout the world. Understanding the cellular and organismal processes controlling iron homeostasis is critical for identifying iron-related diseases and in advancing the clinical treatments for such disorders of iron metabolism. Iron regulatory proteins (IRPs) 1 and 2 are key regulators of vertebrate iron metabolism. These RNA binding proteins post-transcriptionally control the stability or translation of mRNAs ...

  8. A stable live bacterial vaccine.

    Science.gov (United States)

    Kunda, Nitesh K; Wafula, Denis; Tram, Meilinn; Wu, Terry H; Muttil, Pavan

    2016-06-01

    Formulating vaccines into a dry form enhances its thermal stability. This is critical to prevent administering damaged and ineffective vaccines, and to reduce its final cost. A number of vaccines in the market as well as those being evaluated in the clinical setting are in a dry solid state; yet none of these vaccines have achieved long-term stability at high temperatures. We used spray-drying to formulate a recombinant live attenuated Listeria monocytogenes (Lm; expressing Francisella tularensis immune protective antigen pathogenicity island protein IglC) bacterial vaccine into a thermostable dry powder using various sugars and an amino acid. Lm powder vaccine showed minimal loss in viability when stored for more than a year at ambient room temperature (∼23°C) or for 180days at 40°C. High temperature viability was achieved by maintaining an inert atmosphere in the storage container and removing oxygen free radicals that damage bacterial membranes. Further, in vitro antigenicity was confirmed by infecting a dendritic cell line with cultures derived from spray dried Lm and detection of an intracellularly expressed protective antigen. A combination of stabilizing excipients, a cost effective one-step drying process, and appropriate storage conditions could provide a viable option for producing, storing and transporting heat-sensitive vaccines, especially in regions of the world that require them the most. PMID:27020530

  9. Recent Advances in Iron Metabolism: Relevance for Health, Exercise, and Performance.

    Science.gov (United States)

    Buratti, Paolo; Gammella, Elena; Rybinska, Ilona; Cairo, Gaetano; Recalcati, Stefania

    2015-08-01

    Iron is necessary for physiological processes essential for athletic performance, such as oxygen transport, energy production, and cell division. However, an excess of "free" iron is toxic because it produces reactive hydroxyl radicals that damage biological molecules, thus leading to cell and tissue injury. Therefore, iron homeostasis is strictly regulated; and in recent years, there have been important advancements in our knowledge of the underlying processes. Hepcidin is the central regulator of systemic iron homeostasis and exerts its function by controlling the presence of the iron exporter ferroportin on the cell membrane. Hepcidin binding induces ferroportin degradation, thus leading to cellular iron retention and decreased levels of circulating iron. As iron is required for hemoglobin synthesis, the tight link between erythropoiesis and iron metabolism is particularly relevant to sports physiology. The iron needed for hemoglobin synthesis is ensured by inhibiting hepcidin to increase ferroportin activity and iron availability and hence to make certain that efficient blood oxygen transport occurs for aerobic exercise. However, hepcidin expression is also affected by exercise-associated conditions, such as iron deficiency, anemia or hypoxia, and, particularly, inflammation, which can play a role in the pathogenesis of sports anemia. Here, we review recent advances showing the relevance of iron for physical exercise and athletic performance. Low body iron levels can cause anemia and thus limit the delivery of oxygen to exercising muscle, but tissue iron deficiency may also affect performance by, for example, hampering muscle oxidative metabolism. Accordingly, a hemoglobin-independent effect of iron on exercise capacity has been demonstrated in animal models and humans. Here, we review recent advances showing the relevance of iron for physical exercise and athletic performance. PMID:25494391

  10. Identification and characterisation of an iron-responsive candidate probiotic.

    Directory of Open Access Journals (Sweden)

    Jennifer R Bailey

    Full Text Available BACKGROUND: Iron is an essential cofactor in almost all biological systems. The lactic acid bacteria (LAB, frequently employed as probiotics, are unusual in having little or no requirement for iron. Iron in the human body is sequestered by transferrins and lactoferrin, limiting bacterial growth. An increase in the availability of iron in the intestine by bleeding, surgery, or under stress leads to an increase in the growth and virulence of many pathogens. Under these high iron conditions, LAB are rapidly out-competed; for the levels of probiotic bacteria to be maintained under high iron conditions they must be able to respond by increasing growth rate to compete with the normal flora. Despite this, iron-responsive genera are poorly characterised as probiotics. METHODOLOGY/PRINCIPAL FINDINGS: Here, we show that a panel of probiotics are not able to respond to increased iron availability, and identify an isolate of Streptococcus thermophilus that can increase growth rate in response to increased iron availability. The isolate of S. thermophilus selected was able to reduce epithelial cell death as well as NF-κB signalling and IL-8 production triggered by pathogens. It was capable of crossing an epithelial cell barrier in conjunction with E. coli and downregulating Th1 and Th17 responses in primary human intestinal leukocytes. CONCLUSIONS/SIGNIFICANCE: We propose that an inability to compete with potential pathogens under conditions of high iron availability such as stress and trauma may contribute to the lack of efficacy of many LAB-based probiotics in treating disease. Therefore, we offer an alternative paradigm which considers that probiotics should be able to be competitive during periods of intestinal bleeding, trauma or stress.

  11. Hepcidin in iron overload disorders

    OpenAIRE

    Papanikolaou, George; Tzilianos, Michalis; Christakis, John I.; Bogdanos, Dionisios; Tsimirika, Konstantina; MacFarlane, Julie; Goldberg, Y. Paul; Sakellaropoulos, Nikos; Ganz, Tomas; Nemeth, Elizabeta

    2005-01-01

    Hepcidin is the principal regulator of iron absorption in humans. The peptide inhibits cellular iron efflux by binding to the iron export channel ferroportin and inducing its internalization and degradation. Either hepcidin deficiency or alterations in its target, ferroportin, would be expected to result in dysregulated iron absorption, tissue maldistribution of iron, and iron overload. Indeed, hepcidin deficiency has been reported in hereditary hemochromatosis and attributed to mutations in ...

  12. Iron deficiency anemia's effect on bone formation in zebrafish mutant.

    Science.gov (United States)

    Bo, Lin; Liu, Zhichun; Zhong, Yingbin; Huang, Jian; Chen, Bin; Wang, Han; Xu, Youjia

    2016-07-01

    Iron is one of the essential elements of life. Iron metabolism is related to bone metabolism. Previous studies have confirmed that iron overload is a risk factor for osteoporosis. But the correlation between iron deficiency and bone metabolism remains unclear. Ferroportin 1 is identified as a cellular iron exporter and required for normal iron cycling. In zebrafish, the mutant of ferroportin 1 gene (fpn1), weh(tp85c) exhibited the defective iron transport, leading to developing severe hypochromic anemia. We used weh(tp85c) as a model for investigating iron deficiency and bone metabolism. In this study, we examined the morphology of the developing cartilage and vertebrae of the Weh(tp85) compared to the wild type siblings by staining the larvae with alcian blue for cartilage and alizarin red for the bone. In addition, we evaluated the expression patterns of the marker genes of bone development and cell signaling in bone formation. Our results showed that weh(tp85c) mutant larvae exhibited the defects in bone formation, revealing by decreases in the number of calcified vertebrae along with decreased expression of osteoblast novel genes: alpl, runx2a and col1a1a and BMPs signaling genes in osteoblast differentiation: bmp2a and bmp2b. Our data suggest that iron deficiency anemia affects bone formation, potentially through the BMPs signaling pathway in zebrafish. PMID:27184405

  13. Methanogens rapidly transition from methane production to iron reduction.

    Science.gov (United States)

    Sivan, O; Shusta, S S; Valentine, D L

    2016-03-01

    Methanogenesis, the microbial methane (CH4 ) production, is traditionally thought to anchor the mineralization of organic matter as the ultimate respiratory process in deep sediments, despite the presence of oxidized mineral phases, such as iron oxides. This process is carried out by archaea that have also been shown to be capable of reducing iron in high levels of electron donors such as hydrogen. The current pure culture study demonstrates that methanogenic archaea (Methanosarcina barkeri) rapidly switch from methanogenesis to iron-oxide reduction close to natural conditions, with nitrogen atmosphere, even when faced with substrate limitations. Intensive, biotic iron reduction was observed following the addition of poorly crystalline ferrihydrite and complex organic matter and was accompanied by inhibition of methane production. The reaction rate of this process was of the first order and was dependent only on the initial iron concentrations. Ferrous iron production did not accelerate significantly with the addition of 9,10-anthraquinone-2,6-disulfonate (AQDS) but increased by 11-28% with the addition of phenazine-1-carboxylate (PCA), suggesting the possible role of methanophenazines in the electron transport. The coupling between ferrous iron and methane production has important global implications. The rapid transition from methanogenesis to reduction of iron-oxides close to the natural conditions in sediments may help to explain the globally-distributed phenomena of increasing ferrous concentrations below the traditional iron reduction zone in the deep 'methanogenic' sediment horizon, with implications for metabolic networking in these subsurface ecosystems and in past geological settings. PMID:26762691

  14. Thin Wall Iron Castings

    Energy Technology Data Exchange (ETDEWEB)

    J.F. Cuttino; D.M. Stefanescu; T.S. Piwonka

    2001-10-31

    Results of an investigation made to develop methods of making iron castings having wall thicknesses as small as 2.5 mm in green sand molds are presented. It was found that thin wall ductile and compacted graphite iron castings can be made and have properties consistent with heavier castings. Green sand molding variables that affect casting dimensions were also identified.

  15. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... Susan got counseling on how to improve her health and well-being. She began taking iron supplements and multivitamins to improve her iron levels. Susan also made changes to her diet, such as focusing more on green leafy vegetables, red meats, nuts, dried fruits, and beans. Other ...

  16. Iron-Deficiency Anemia

    Medline Plus

    Full Text Available ... Blood Tests Blood Transfusion Restless Legs Syndrome Send a link to NHLBI to someone by E-MAIL | ... Iron-Deficiency Anemia? Español Iron-deficiency anemia is a common, easily treated condition that occurs if you ...

  17. Bacterial tactic responses.

    Science.gov (United States)

    Armitage, J P

    1999-01-01

    Many, if not most, bacterial species swim. The synthesis and operation of the flagellum, the most complex organelle of a bacterium, takes a significant percentage of cellular energy, particularly in the nutrient limited environments in which many motile species are found. It is obvious that motility accords cells a survival advantage over non-motile mutants under normal, poorly mixed conditions and is an important determinant in the development of many associations between bacteria and other organisms, whether as pathogens or symbionts and in colonization of niches and the development of biofilms. This survival advantage is the result of sensory control of swimming behaviour. Although too small to sense a gradient along the length of the cell, and unable to swim great distances because of buffetting by Brownian motion and the curvature resulting from a rotating flagellum, bacteria can bias their random swimming direction towards a more favourable environment. The favourable environment will vary from species to species and there is now evidence that in many species this can change depending on the current physiological growth state of the cell. In general, bacteria sense changes in a range of nutrients and toxins, compounds altering electron transport, acceptors or donors into the electron transport chain, pH, temperature and even the magnetic field of the Earth. The sensory signals are balanced, and may be balanced with other sensory pathways such as quorum sensing, to identify the optimum current environment. The central sensory pathway in this process is common to most bacteria and most effectors. The environmental change is sensed by a sensory protein. In most species examined this is a transmembrane protein, sensing the external environment, but there is increasing evidence for additional cytoplasmic receptors in many species. All receptors, whether sensing sugars, amino acids or oxygen, share a cytoplasmic signalling domain that controls the activity of a

  18. A mathematical model for the bacterial oxidation of a sulfide ore concentrate

    Energy Technology Data Exchange (ETDEWEB)

    Nagpal, S.; Dahlstrom, D. (Univ. of Utah, Salt Lake City, UT (United States). Dept. of Chemical Engineering); Oolman, T. (Radian Corp., Austin, TX (United States))

    1994-03-05

    The effect of dilution rate and feed solids concentration on the bacterial leaching of a pyrite/arsenopyrite ore concentrate was studied. A mathematical model was developed for the process based on the steady-state data collected over the range of dilution rates (20 to 110 h) and feed solids concentrations (6 to 18% w/v) studied. A modified Monod model with inhibition by arsenic was used to model bacterial ferrous ion oxidation rates. The model assumes that (1) pyrite and arsenopyrite leaching occurs solely by the action of ferric iron produced from the bacterial oxidation of ferrous iron and (2) bacterial growth rates are proportional to ferrous ion oxidation rate. The equilibrium among the various ionic species present in the leach solution that are likely to have a significant effect on the bioleach process were included in the model.

  19. Colour Metallography of Cast Iron

    Institute of Scientific and Technical Information of China (English)

    Zhou Jiyang; Liu Jincheng

    2011-01-01

    White Cast Iron (Ⅰ) White cast iron or ‘white iron' refers to the type of cast iron in which all of the carbon exists as carbide;there is no graphite in the as-cast structure and the fractured surface shows a white colour.White cast iron can be divided in three classes:· Normal white cast iron — this iron contains only C,Si,Mn,P and S,with no other alloying elements.· Low-alloy white cast iron — the total mass fraction of alloying elements is less than 5%.

  20. Iron replacement therapy

    DEFF Research Database (Denmark)

    Nielsen, Ole Haagen; Coskun, Mehmet; Weiss, Günter

    2016-01-01

    PURPOSE OF REVIEW: Approximately, one-third of the world's population suffers from anemia, and at least half of these cases are because of iron deficiency. With the introduction of new intravenous iron preparations over the last decade, uncertainty has arisen when these compounds should be...... administered and under which circumstances oral therapy is still an appropriate and effective treatment. RECENT FINDINGS: Numerous guidelines are available, but none go into detail about therapeutic start and end points or how iron-deficiency anemia should be best treated depending on the underlying cause of...... iron deficiency or in regard to concomitant underlying or additional diseases. SUMMARY: The study points to major issues to be considered in revisions of future guidelines for the true optimal iron replacement therapy, including how to assess the need for treatment, when to start and when to stop...

  1. Microbes: mini iron factories.

    Science.gov (United States)

    Joshi, Kumar Batuk

    2014-12-01

    Microbes have flourished in extreme habitats since beginning of the Earth and have played an important role in geological processes like weathering, mineralization, diagenesis, mineral formation and destruction. Biotic mineralization is one of the most fascinating examples of how microbes have been influencing geological processes. Iron oxidizing and reducing bacteria are capable of precipitating wide varieties of iron oxides (magnetite), carbonates (siderite) and sulphides (greigite) via controlled or induced mineralization processes. Microbes have also been considered to play an important role in the history of evolution of sedimentary rocks on Earth from the formation of banded iron formations during the Archean to modern biotic bog iron and ochre deposits. Here, we discuss the role that microbes have been playing in precipitation of iron and the role and importance of interdisciplinary studies in the field of geology and biology in solving some of the major geological mysteries. PMID:25320452

  2. Bioleaching of marmatite in high concentration of iron

    Institute of Scientific and Technical Information of China (English)

    邱冠周; 吴伯增; 覃文庆; 蓝卓越

    2002-01-01

    Bioleaching of marmatite with a culture of Thiobacillus ferrooxidans and Thiobacillus thiooxidans in high concentration of iron was studied, the results show that the zinc leaching rate of the mixed culture is faster than that of the sole Thiobacillus ferrooxidans, the increasing iron concentration in leaching solution enhances the zinc leaching rate. The SEM analysis indicates that the chemical leaching residues is covered with porous solid layer of elemental sulfur, while elemental sulfur is not found in the bacterial leaching residues. The primary role of bacteria in bioleaching of sphalerite is to oxidize the chemical leaching products of ferrous ion and elemental sulfur, thus the indirect mechanism prevails in the bioleaching of marmatite.

  3. Ferrous iron oxidation by Thiobacillus ferrooxidans: inhibition with benzoic acid, sorbic acid, and sodium lauryl sulfate

    Energy Technology Data Exchange (ETDEWEB)

    Onysko, S.J.; Kleinmann, R.L.P.; Erickson, P.M.

    1984-07-01

    Thiobacillus ferrooxidans promote indirect oxidation of pyrite through the catalysis of the oxidation of ferrous iron to ferric iron, which is an effective oxidant of pyrite. These bacteria also may catalyze direct oxidation of pyrite by oxygen. A number of organic compounds, under laboratory conditions, can apparently inhibit both the oxidation of ferrous iron to ferric iron by T. ferrooxidans and the weathering of pyritic material by mixed cultures of acid mine drainage microorganisms. In this study, benzoic acid, sorbic acid, and sodium lauryl sulfate at low concentrations (5 to 10 mg/liter) each effectively inhibited bacterial oxidation of ferrous iron in batch cultures of Thiobacillus ferrooxidans. The rate of chemical oxidation of ferrous iron in low-pH, sterile batch reactors was not substantially affected at the tested concentrations (5 to 50 mg/liter) of any of the compounds.

  4. Iron economy in Chlamydomonas reinhardtii

    Science.gov (United States)

    Glaesener, Anne G.; Merchant, Sabeeha S.; Blaby-Haas, Crysten E.

    2013-01-01

    While research on iron nutrition in plants has largely focused on iron-uptake pathways, photosynthetic microbes such as the unicellular green alga Chlamydomonas reinhardtii provide excellent experimental systems for understanding iron metabolism at the subcellular level. Several paradigms in iron homeostasis have been established in this alga, including photosystem remodeling in the chloroplast and preferential retention of some pathways and key iron-dependent proteins in response to suboptimal iron supply. This review presents our current understanding of iron homeostasis in Chlamydomonas, with specific attention on characterized responses to changes in iron supply, like iron-deficiency. An overview of frequently used methods for the investigation of iron-responsive gene expression, physiology and metabolism is also provided, including preparation of media, the effect of cell size, cell density and strain choice on quantitative measurements and methods for the determination of metal content and assessing the effect of iron supply on photosynthetic performance. PMID:24032036

  5. Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus. A role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation

    OpenAIRE

    Mendoza-Cózatl, David G.; Butko, Emerald; Springer, Franziska; Torpey, Justin W.; Komives, Elizabeth A.; Kehr, Julia; Schroeder, Julian

    2008-01-01

    Phytochelatins (PCs) are glutathione-derived peptides that function in heavy metal detoxification in plants and certain fungi. Recent research in Arabidopsis has shown that PCs undergo long-distance transport between roots and shoots. However, it remains unknown which tissues or vascular systems, xylem or phloem, mediate PC translocation and whether PC transport contributes to physiologically relevant long-distance transport of cadmium (Cd) between shoots and roots. To address these questions...

  6. From Iron Bowl to Iron Stomach

    Institute of Scientific and Technical Information of China (English)

    MICHAEL; L.; O’NEAL

    2009-01-01

    A few decades ago, "Iron Bowl" referred to not having to go hungry in China if you were employed by the Agovernment. The government gave you a job that secured the filling of one’s rice bowl. This concept and practice did create loyalty, as the times were hard. China has moved far past those times to become the

  7. Holo- And Apo- Structures of Bacterial Periplasmic Heme Binding Proteins

    Energy Technology Data Exchange (ETDEWEB)

    Ho, W.W.; Li, H.; Eakanunkul, S.; Tong, Y.; Wilks, A.; Guo, M.; Poulos, T.L.

    2009-06-01

    An essential component of heme transport in Gram-negative bacterial pathogens is the periplasmic protein that shuttles heme between outer and inner membranes. We have solved the first crystal structures of two such proteins, ShuT from Shigella dysenteriae and PhuT from Pseudomonas aeruginosa. Both share a common architecture typical of Class III periplasmic binding proteins. The heme binds in a narrow cleft between the N- and C-terminal binding domains and is coordinated by a Tyr residue. A comparison of the heme-free (apo) and -bound (holo) structures indicates little change in structure other than minor alterations in the heme pocket and movement of the Tyr heme ligand from an 'in' position where it can coordinate the heme iron to an 'out' orientation where it points away from the heme pocket. The detailed architecture of the heme pocket is quite different in ShuT and PhuT. Although Arg{sup 228} in PhuT H-bonds with a heme propionate, in ShuT a peptide loop partially takes up the space occupied by Arg{sup 228}, and there is no Lys or Arg H-bonding with the heme propionates. A comparison of PhuT/ShuT with the vitamin B{sub 12}-binding protein BtuF and the hydroxamic-type siderophore-binding protein FhuD, the only two other structurally characterized Class III periplasmic binding proteins, demonstrates that PhuT/ShuT more closely resembles BtuF, which reflects the closer similarity in ligands, heme and B{sub 12}, compared with ligands for FhuD, a peptide siderophore.

  8. Metagenomic Study of Iron Homeostasis in Iron Depositing Hot Spring Cyanobacterial Community

    Science.gov (United States)

    Brown, I.; Franklin H.; Tringe, S. G.; Klatt, C. G.; Bryant, D. A.; Sarkisova, S. A.; Guevara, M.

    2010-01-01

    Introduction: It is not clear how an iron-rich thermal hydrosphere could be hospitable to cyanobacteria, since reduced iron appears to stimulate oxidative stress in all domains of life and particularly in oxygenic phototrophs. Therefore, metagenomic study of cyanobacterial community in iron-depositing hot springs may help elucidate how oxygenic prokaryotes can withstand the extremely high concentrations of reactive oxygen species (ROS) produced by interaction between environmental Fe2+ and O2. Method: Anchor proteins from various species of cyanobacteria and some anoxygenic phototrophs were selected on the basis of their hypothetical role in Fe homeostasis and the suppression of oxidative stress and were BLASTed against the metagenomes of iron-depositing Chocolate Pots and freshwater Mushroom hot springs. Results: BLASTing proteins hypothesized to be involved in Fe homeostasis against the microbiomes from the two springs revealed that iron-depositing hot spring has a greater abundance of defensive proteins such as bacterioferritin comigratory protein (Bcp) and DNA-binding Ferritin like protein (Dps) than a fresh-water hot spring. One may speculate that the abundance of Bcp and Dps in an iron-depositing hot spring is connected to the need to suppress oxidative stress in bacteria inhabiting environments with high Fe2+ concnetration. In both springs, Bcp and Dps are concentrated within the cyanobacterial fractions of the microbial community (regardless of abundance). Fe3+ siderophore transport (from the transport system permease protein query) may be less essential to the microbial community of CP because of the high [Fe]. Conclusion: Further research is needed to confirm that these proteins are unique to photoautotrophs such as those living in iron-depositing hot spring.

  9. Major Role for FeoB in Campylobacter jejuni Ferrous Iron Acquisition, Gut Colonization, and Intracellular Survival

    OpenAIRE

    Naikare, Hemant; Palyada, Kiran; Panciera, Roger; Marlow, Denver; Stintzi, Alain

    2006-01-01

    To assess the importance of ferrous iron acquisition in Campylobacter physiology and pathogenesis, we disrupted and characterized the Fe2+ iron transporter, FeoB, in Campylobacter jejuni NCTC 11168, 81-176, and ATCC 43431. The feoB mutant was significantly affected in its ability to transport 55Fe2+. It accumulated half the amount of iron than the wild-type strain during growth in an iron-containing medium. The intracellular iron of the feoB mutant was localized in the periplasmic space versu...

  10. Impact of iron status on cadmium uptake in suckling piglets

    International Nuclear Information System (INIS)

    Low iron status is known to increase the uptake of dietary cadmium in both adolescents and adults and there are indications that cadmium is absorbed from the intestine by the two major iron transporters divalent metal transporter 1 (DMT1) and ferroportin 1 (FPN1). In addition, it has been suggested that duodenal metallothionein (MT) may limit the transport of cadmium across the intestinal epithelium. The present investigation was undertaken to examine whether iron status influences cadmium absorption in newborns by applying a model of suckling piglets and the possible roles of duodenal DMT1, FPN1 and MT. An oral cadmium dose (20 μg/kg body weight) was given daily for 6 consecutive days on postnatal days (PNDs) 10-15 to iron-deficient or iron-supplemented piglets. The cadmium dose was chosen to keep the cadmium level at a realistically low but still detectable level, and without inducing any adverse health effects in the piglets. As indicators of cadmium uptake, cadmium levels in blood and kidneys were measured on PND 16 by inductively coupled plasma-mass spectrometry (ICP-MS). Cadmium levels in blood were statistically significantly correlated with cadmium levels in kidneys. The cadmium uptake was not higher in iron-deficient suckling piglets; rather, we detected a higher cadmium uptake in the iron-supplemented ones. The expression and localisation of DMT1, FPN1 and MT were not affected by iron status and could therefore not explain the findings. Our results suggest that there are developmental differences in the handling of both iron and cadmium in newborns as compared to adults

  11. Contribution of the Shigella flexneri Sit, Iuc, and Feo Iron Acquisition Systems to Iron Acquisition In Vitro and in Cultured Cells

    OpenAIRE

    Runyen-Janecky, L J; Reeves, S.A.; Gonzales, E. G.; Payne, S M

    2003-01-01

    Shigella flexneri possesses multiple iron acquisition systems, including proteins involved in the synthesis and uptake of siderophores and the Feo system for ferrous iron utilization. We identified an additional S. flexneri putative iron transport gene, sitA, in a screen for S. flexneri genes that are induced in the eukaryotic intracellular environment. sitA was present in all Shigella species and in most enteroinvasive Escherichia coli strains but not in any other E. coli isolates tested. Th...

  12. Absorption of iron in the aged; investigation of mucosal-uptake, mucosal-transfer and retention of a physiological dose of inorganic iron

    International Nuclear Information System (INIS)

    Iron (II) and iron (III) uptake by the mucosal cells, the retention in the body, and the mucosal-transport fraction were studied in 40 healthy people over 65 years old, in 30 young adults and in 20 patients with iron-deficiency. The study was performed with 59Fe as a tracer and 51Cr as an inert indicator. The radioactivity was measured with a whole body scanner 24 hours and 24 days after ingestion

  13. Bacterial meningitis in children

    International Nuclear Information System (INIS)

    To demonstrate the epidemiology, clinical manifestations and bacteriological profile of bacterial meningitis in children beyond the neonatal period in our hospital. This was a retrospective descriptive study conducted at Prince Rashid Hospital in Irbid, Jordan. The medical records of 50 children with the diagnosis of bacterial meningitis during 4 years period, were reviewed. The main cause of infection was streptococcus pneumoniae, followed by Haemophilus influenza and Niesseria meningitides. Mortality was higher in infants and meningococcal infection, while complications were more encountered in cases of streptococcus pneumoniae. Cerebrospinal fluid culture was positive in 11 cases and Latex agglutination test in 39. There is a significant reduction of the numbers of bacterial meningitis caused by Haemophilus influenza type B species. (author)

  14. Analyses of shielding benchmark experiments in thick iron

    Energy Technology Data Exchange (ETDEWEB)

    Oka, Y.; Ohashi, S.; Hashikura, H.; An, S. (Tokyo Univ. (Japan). Nuclear Engineering Research Lab.)

    1981-03-01

    The results of the iron related shielding benchmark experiments that have been performed in the world are summarized and analysed by using discrete ordinates transport calculations. Analyses of three one-dimensional experiments show good agreement above 10/sup 5/ eV and disagreement below 10/sup 5/ eV in neutron spectra. Analyses of four two-dimensional experiments reveal overestimation of threshold-type reaction rates up to 40 cm iron thickness and underestimation above 50 cm.

  15. Diagnosis of bacterial vaginosis

    Directory of Open Access Journals (Sweden)

    Đukić Slobodanka

    2013-01-01

    Full Text Available Bacterial vaginosis is a common, complex clinical syndrome characterized by alterations in the normal vaginal flora. When symptomatic, it is associated with a malodorous vaginal discharge and on occasion vaginal burning or itching. Under normal conditions, lactobacilli constitute 95% of the bacteria in the vagina. Bacterial vaginosis is associated with severe reduction or absence of the normal H2O2­producing lactobacilli and overgrowth of anaerobic bacteria and Gardnerella vaginalis, Atopobium vaginae, Mycoplasma hominis and Mobiluncus species. Most types of infectious disease are diagnosed by culture, by isolating an antigen or RNA/DNA from the microbe, or by serodiagnosis to determine the presence of antibodies to the microbe. Therefore, demonstration of the presence of an infectious agent is often a necessary criterion for the diagnosis of the disease. This is not the case for bacterial vaginosis, since the ultimate cause of the disease is not yet known. There are a variety of methods for the diagnosis of bacterial vaginosis but no method can at present be regarded as the best. Diagnosing bacterial vaginosis has long been based on the clinical criteria of Amsel, whereby three of four defined criteria must be satisfied. Nugent’s scoring system has been further developed and includes validation of the categories of observable bacteria structures. Up­to­date molecular tests are introduced, and better understanding of vaginal microbiome, a clear definition for bacterial vaginosis, and short­term and long­term fluctuations in vaginal microflora will help to better define molecular tests within the broader clinical context.

  16. Environmental Aspects of Iron ORE Mining

    OpenAIRE

    B. Chandra Sekhar*; *, Dr. S. Siddi Raju

    2014-01-01

    Iron ore mining activities such as top soil stripping, drilling and blasting extraction of ore, waste rock dumping, loading and unloading of ore, crushing and screening, material transport etc., emit both fugitive and fugitive dusts into the environment. A direct effect of the mining and its activities deteriorate the quality of ambient air, which requires mitigation measures. Blasting causes very high noise and vibration at a very short duration. Surface water pollution occurs d...

  17. A cytosolic iron chaperone that delivers iron to ferritin

    OpenAIRE

    Shi, Haifeng; Bencze, Krisztina Z.; Stemmler, Timothy L.; Philpott, Caroline C.

    2008-01-01

    Ferritins are the main iron storage proteins found in animals, plants, and bacteria. The capacity to store iron in ferritin is essential for life in mammals, but the mechanism by which cytosolic iron is delivered to ferritin is unknown. Human ferritins expressed in yeast contain little iron. Human Poly r(C)-Binding Protein 1 (PCBP1) increased the amount of iron loaded into ferritin when expressed in yeast. PCBP1 bound to ferritin in vivo, and bound iron and facilitated iron loading into ferri...

  18. 21 CFR 310.518 - Drug products containing iron or iron salts.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 5 2010-04-01 2010-04-01 false Drug products containing iron or iron salts. 310... Drug products containing iron or iron salts. Drug products containing elemental iron or iron salts as...) that contains iron or iron salts for use as an iron source shall bear the following statement:...

  19. Interfering with bacterial gossip

    DEFF Research Database (Denmark)

    Bjarnsholt, Thomas; Tolker-Nielsen, Tim; Givskov, Michael

    2011-01-01

    defense. Antibiotics exhibit a rather limited effect on biofilms. Furthermore, antibiotics have an ‘inherent obsolescence’ because they select for development of resistance. Bacterial infections with origin in bacterial biofilms have become a serious threat in developed countries. Pseudomonas aeruginosa......, resistance and QS inhibition as future antimicrobial targets, in particular those that would work to minimize selection pressures for the development of resistant bacteria.......Biofilm resilience poses major challenges to the development of novel antimicrobial agents. Biofilm bacteria can be considered small groups of “Special Forces” capable of infiltrating the host and destroying important components of the cellular defense system with the aim of crippling the host...

  20. Analysis of the global ocean sampling (GOS) project for trends in iron uptake by surface ocean microbes.

    Science.gov (United States)

    Toulza, Eve; Tagliabue, Alessandro; Blain, Stéphane; Piganeau, Gwenael

    2012-01-01

    Microbial metagenomes are DNA samples of the most abundant, and therefore most successful organisms at the sampling time and location for a given cell size range. The study of microbial communities via their DNA content has revolutionized our understanding of microbial ecology and evolution. Iron availability is a critical resource that limits microbial communities' growth in many oceanic areas. Here, we built a database of 2319 sequences, corresponding to 140 gene families of iron metabolism with a large phylogenetic spread, to explore the microbial strategies of iron acquisition in the ocean's bacterial community. We estimate iron metabolism strategies from metagenome gene content and investigate whether their prevalence varies with dissolved iron concentrations obtained from a biogeochemical model. We show significant quantitative and qualitative variations in iron metabolism pathways, with a higher proportion of iron metabolism genes in low iron environments. We found a striking difference between coastal and open ocean sites regarding Fe(2+) versus Fe(3+) uptake gene prevalence. We also show that non-specific siderophore uptake increases in low iron open ocean environments, suggesting bacteria may acquire iron from natural siderophore-like organic complexes. Despite the lack of knowledge of iron uptake mechanisms in most marine microorganisms, our approach provides insights into how the iron metabolic pathways of microbial communities may vary with seawater iron concentrations. PMID:22363520